Citrus Sinensis ID: 012352

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-----
Protein Sequence
MESPNLLVASGSKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKV
Secondary Structure (PSIPRED)
cccccEEEEEccEEEcccccccccEEEEEEccccHHHHHHHHHHHHHHcccEEEEEEEcccccccHHHHHHHHHcccccEEEEEccccccccccccHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHcccccccEEEEEcccccccccHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHccccccccccccccccccccccccHHHHHHHHHccccccccEEEEEEEccccccccHHHHHHHHHHcccccEEEEcccccHHHHHHHHccccccEEEEccccHHHHHHHcccccHHHHHcccccEEEEEccccEEEEEccHHHHHHHHHHHHHcccccccccccccccccEEEEEcccHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHcccccccccccccccccccEEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEccccccHHHHcccccEEEEEEEcccHHHHHHHHHHHHHccccEEEEEEHHcccccHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHccccEEEEEccccccHHHHEcccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEEEcccccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHHccccccEEEEccccccHHHHHccEEcHHHHHHccccEEEEccccccEEccccHHHHHHHHHHHHccccccccccccccccccEEEEEcccHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHcccccccHHHHHHcccccccEEEEEccccccccccccccccc
Coil and Loop (DISEMBL)
mespnllvasgsklvsggmrknptlicvpimgeSVDKMVVDMGKANASGADLVEIRLdglknfnpreniktlikespvptlftyrpiweggqydgdeneRVDVLRLAMELGADYIDVELQVAREFNdsirgkkpekcKVIVSshnyqytpsveDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAkfggfltfgtlengivsapgqptiKDLLDLYnfrqmgpdtkvfgiigkpvghskspilyneafksvgfNGVFVHLLVDDIAKFFQtyssndfagfsctiphkeaavkccDEVDTVAKSIGAVNciirrqsdgklfgyntdyvGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGghalsladlenfnpedgmilanttsigmqpkvdetpipkv
Flexible Loop (DISEMBL)
mespnllvasgsklvsggmrknpTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGlknfnpreniktlikespvptlFTYRpiweggqydgdeNERVDVLRLAMELGADYIDVELQVAREfndsirgkkpekCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKsigavnciirrqsdgklfgYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALaygakakgarVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANttsigmqpkvdetpipkv
Low Complexity Region (SEG)
MESPNLLVASGSKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIgaggagkalaygakakgaRVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKV
Disordered region (IsUnstruct)
*********************NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMIL********************
Disordered Region (DISOPRED)
***********************TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLEN****APGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKV
Disordered Region (DISEMBL)
MESPNLLVASGSKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKV
Disordered Region (DISPRO)
***PNLLVASGSKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGR******VSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETP****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESPNLLVASGSKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	465	2.2.26 [Sep-21-2011]
Q9SQT8	603	Bifunctional 3-dehydroqui	yes	no	0.997	0.769	0.737	0.0
Q74ZZ1	1577	Pentafunctional AROM poly	yes	no	0.815	0.240	0.284	7e-35
C5DN02	1579	Pentafunctional AROM poly	yes	no	0.776	0.228	0.297	1e-34
Q6CJC4	1578	Pentafunctional AROM poly	yes	no	0.763	0.224	0.307	1e-33
C4R4R8	1545	Pentafunctional AROM poly	yes	no	0.851	0.256	0.313	3e-33
Q6FIV4	1579	Pentafunctional AROM poly	yes	no	0.776	0.228	0.312	6e-33
A8QCB2	1611	Pentafunctional AROM poly	N/A	no	0.767	0.221	0.296	6e-33
C8Z543	1588	Pentafunctional AROM poly	N/A	no	0.776	0.227	0.286	1e-31
P08566	1588	Pentafunctional AROM poly	yes	no	0.776	0.227	0.286	1e-31
C5FQ73	1571	Pentafunctional AROM poly	N/A	no	0.8	0.236	0.291	1e-31

>sp|Q9SQT8|DHQSD_ARATH Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=EMB3004 PE=1 SV=1

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/469 (73%), Positives = 400/469 (85%), Gaps = 5/469 (1%)

Query: 1   MESPNLLVASGS---KLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRL 57
           ME  N+ VAS S   ++ S  + KNP+LIC P+M +S+DKMV++  KA+  GADLVEIRL
Sbjct: 68  MEPSNVYVASNSTEMEIGSHDIVKNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRL 127

Query: 58  DGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDV 117
           D LK+FNP E++KT+IK+SP+PTLFTYRP WEGGQY+GDENER DVLRLAMELGADYIDV
Sbjct: 128 DWLKDFNPLEDLKTIIKKSPLPTLFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDV 187

Query: 118 ELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTAL 177
           ELQVA EF  SI GKKP K KVIVSSHNYQ TPSVEDL  LVARIQ +GADIVK ATTA+
Sbjct: 188 ELQVASEFIKSIDGKKPGKFKVIVSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAV 247

Query: 178 DITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTI 237
           DI DVAR+F IT  +QVP IGLVMGERGL+SRILC+KFGG+LTFGTL++  VSAPGQPTI
Sbjct: 248 DIADVARMFHITSKAQVPTIGLVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTI 307

Query: 238 KDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFF 297
           KDLLDLYNFR++GPDTKV+GIIGKPV HSKSPI++N+AFKSV FNGV+VHLLVD++  F 
Sbjct: 308 KDLLDLYNFRRIGPDTKVYGIIGKPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFL 367

Query: 298 QTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGA 357
           Q YSS+DFAGFSCTIPHKEAA++CCDEVD +AKSIGAVN I+RR+SDGKL GYNTD +G+
Sbjct: 368 QAYSSSDFAGFSCTIPHKEAALQCCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGS 427

Query: 358 ISAIEDGLR--GRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYD 415
           ISAIEDGLR  G  +     SS LA K  VVIGAGGAGKALAYGAK KGA+VVIANRTY+
Sbjct: 428 ISAIEDGLRSSGDPSSVPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYE 487

Query: 416 RARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPK 464
           RA ELAE +GG ALSL DL+N++PEDGM+LANTTS+GMQP V+ETPI K
Sbjct: 488 RALELAEAIGGKALSLTDLDNYHPEDGMVLANTTSMGMQPNVEETPISK 536

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 5

>sp|Q74ZZ1|ARO1_ASHGO Pentafunctional AROM polypeptide OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ARO1 PE=3 SV=2

 Score =  149 bits (375), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 119/418 (28%), Positives = 215/418 (51%), Gaps = 39/418 (9%)

Query: 21   KNPTLICVPIMGESVDKMVVDMGKANAS--GADLVEIRLDGLKNFNPRENIKTL----IK 74
            K  T +C+     +   ++ +M +   +  G + VE+R+D L+N++    +K L    + 
Sbjct: 1065 KRSTFVCL-----TFQNLLPEMERIKEAVYGCEAVEVRVDHLENYSQDFVLKQLTALRLA 1119

Query: 75   ESPVPTLFTYRPIWEGGQY-DGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKK 133
               +P +FT R   +GG++ D D +   D+L + ++ G +++D+EL +    +  I  K+
Sbjct: 1120 TDSLPIVFTIRTKKQGGKFLDNDYSTLEDLLTVGLKAGVEFLDLELTLPSPIHQRILNKR 1179

Query: 134  PEKCKVIVSSHNY--QYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQI-TV 190
              K ++I S H++  +++    +  +  A+  A   D +KF  TA    D   + +  + 
Sbjct: 1180 -YKTRIIGSHHDFSGEFSWEHPEWEHRYAQALAMQVDAIKFVATAKGFGDNLSLEEFRSK 1238

Query: 191  HSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLY-NFRQM 249
            H+  P+I + M E G +SR+L       +T   L     +APGQ T++ + +LY +   +
Sbjct: 1239 HTDKPLIAINMRECGKLSRVLNTILTP-ITSDVLPQA--AAPGQLTLRQINELYASIGGL 1295

Query: 250  GPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAG 307
             P  K+F ++G P+GHS+SPIL+N  + S+G    F     D  +I K     S  D  G
Sbjct: 1296 RPK-KMF-VVGSPIGHSRSPILHNTGYNSLGLPYTFDKFETDSAEIVK-KSLLSREDLGG 1352

Query: 308  FSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLR 366
             + TIP K+  ++  DE+   AK IGAVN II ++ DG+  G+NTD++G   S I +G+ 
Sbjct: 1353 IAVTIPLKQDIMQYLDELTDSAKCIGAVNTIIPKK-DGRFIGHNTDWLGIKNSLIANGVP 1411

Query: 367  GRLNVSGGVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTYDRARELAET 423
              +N +G           +++G+GG  +A AY   + + + + + NRT     EL ++
Sbjct: 1412 EHVNTAG-----------LIVGSGGTARAAAYAFHEMQCSTIYMINRTTSNLTELQKS 1458

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C5DN02|ARO1_LACTC Pentafunctional AROM polypeptide OS=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=ARO1 PE=3 SV=1

 Score =  147 bits (372), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/386 (29%), Positives = 195/386 (50%), Gaps = 25/386 (6%)

Query: 48   SGADLVEIRLDGLKNFNPRENIKTL----IKESPVPTLFTYRPIWEGGQY-DGDENERVD 102
            +G   VE+R+D LK+++     K L    +  S +P +FT R   +GGQ+ D D++    
Sbjct: 1088 AGCSAVELRVDQLKSYDLDFVAKQLSILRLASSSLPIIFTIRTKSQGGQFPDDDKSTLGS 1147

Query: 103  VLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNY--QYTPSVEDLSNLVA 160
            +L LA+E+G +++D+EL ++ E   S+   K    K+I S H++  ++  +  +  N   
Sbjct: 1148 LLSLALEVGVEFVDMELTLSSELQYSLVNNK-RNTKIIGSHHDFDAKFDWNDSEWENRYN 1206

Query: 161  RIQASGADIVKFATTALDITDVARVFQITV-HSQVPIIGLVMGERGLISRILCAKFGGFL 219
            +  +   D+VKF  TA D  D  ++ Q  + H+  P+I + M + G +SR+L       +
Sbjct: 1207 QALSLDVDVVKFVGTAKDFEDNLKLEQFRLQHTAKPLIAINMTDVGKMSRVLNTVLTP-V 1265

Query: 220  TFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSV 279
            T   L +   SAPGQ T+  + ++Y     G   K F ++G P+ HS+SP+L+N  +K +
Sbjct: 1266 TSSLLPSA--SAPGQLTLSQINEIYTLLG-GFSAKNFYVVGSPISHSRSPVLHNTGYKIL 1322

Query: 280  GFNGVFVHLLVDDIAKFF-QTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCI 338
            G    F        ++   +  S     G + TIP K   ++  DE+   AK IGAVN +
Sbjct: 1323 GLPHKFEKFETSSASEVKDKLLSKCKLGGLAVTIPLKLDIMEFMDELSESAKLIGAVNTV 1382

Query: 339  IRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAY 398
            I    DGK  G NTD++G  ++          ++ GV   + G    VIGAGG  +A  Y
Sbjct: 1383 IPL-GDGKFKGDNTDWLGIYNSF---------LANGVPENVRGNSGFVIGAGGTSRAAVY 1432

Query: 399  GAKAKG-ARVVIANRTYDRARELAET 423
                 G + + + NRT ++  +L ++
Sbjct: 1433 ALHQLGCSDIHLVNRTVEKPHDLKKS 1458

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) (taxid: 559295)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q6CJC4|ARO1_KLULA Pentafunctional AROM polypeptide OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=ARO1 PE=3 SV=1

 Score =  144 bits (363), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 118/384 (30%), Positives = 204/384 (53%), Gaps = 29/384 (7%)

Query: 49   GADLVEIRLDGLKNFNPRENIK--TLIKES--PVPTLFTYRPIWEGGQYDGDENERVD-V 103
            G + VE+R+D L +F+     K  +L++ +   +P +FT R + +GG++  D+ + ++ +
Sbjct: 1090 GCEAVELRVDHLSSFSSDFVTKQISLLRAATKSLPIVFTVRTVSQGGKFQDDDYDLLESL 1149

Query: 104  LRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNY--QYTPSVEDLSNLVAR 161
            L++A++   +YID+EL +      ++  KK    K+I S H++  ++     +  N   +
Sbjct: 1150 LKVALKNAVEYIDLELTLPNNILYNVLNKK-SNTKIIGSHHDFAAKFPWDDAEWENRYNQ 1208

Query: 162  IQASGADIVKFATTALDITDVARVFQI-TVHSQVPIIGLVMGERGLISRILCAKFGGFLT 220
              +   DIVKF  TA+   D   + +  + H+  P+I + M E G +SR+L       +T
Sbjct: 1209 ALSLDVDIVKFVGTAVSFDDNLALEKFRSTHTLKPLIAINMTETGKLSRVLNNILTP-VT 1267

Query: 221  FGTLENGIVSAPGQPTIKDLLDLYNFRQMG--PDTKVFGIIGKPVGHSKSPILYNEAFKS 278
               L +   +APGQ T+ ++  LY+  Q+G  P  K F +IG P+GHS+SPIL+N  ++ 
Sbjct: 1268 SKLLPSA--AAPGQLTLAEINQLYH--QIGGLPAKKFF-VIGSPIGHSRSPILHNTGYEL 1322

Query: 279  VGFNGVFVHLLVDDIAKF-FQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNC 337
            +G    F     +DI     +  +  D  G + TIP K   +    E+   AK+IGAVN 
Sbjct: 1323 LGLPHHFDKFETEDIEVVKKELLTREDLGGLAVTIPLKLDIIDSMFELSEAAKTIGAVNT 1382

Query: 338  IIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALA 397
            +I    + K  G NTD++G    I++ L     VS GV S+++G   ++IGAGG  +A  
Sbjct: 1383 VIPLGKN-KFRGDNTDWLG----IKNSL-----VSNGVPSSVSGSAGLIIGAGGTSRAAI 1432

Query: 398  YGAKAKGARVV-IANRTYDRAREL 420
            Y  K  G   + + NRT ++ ++L
Sbjct: 1433 YALKQIGCDTIYMLNRTTEKLQKL 1456

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C4R4R8|ARO1_PICPG Pentafunctional AROM polypeptide OS=Komagataella pastoris (strain GS115 / ATCC 20864) GN=ARO1 PE=3 SV=1

 Score =  143 bits (360), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 134/427 (31%), Positives = 212/427 (49%), Gaps = 31/427 (7%)

Query: 47   ASGADLVEIRLDGLKNFNPR---ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVD- 102
             +G D VE+R+D LK  +       I  L  ++ VP LFT R   +GG++  D  E ++ 
Sbjct: 1066 TNGCDAVELRVDLLKQHDSHFISNQIGILRNQTSVPILFTIRTKSQGGRFPDDSYEDIER 1125

Query: 103  VLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLS--NLVA 160
            +L LA++LG +Y+D+EL +     DS+  K+ +  K+I S H++  T    ++   N   
Sbjct: 1126 LLNLAIKLGVEYVDLELSLPESLLDSVASKR-QFTKIIGSHHDFSGTVKWNNVEWENKYL 1184

Query: 161  RIQASGADIVKFATTALDITDVARVFQI-TVHSQVPIIGLVMGERGLISRILCAKFGGFL 219
                   DI+KF  TA  + D   +    ++H+  P IG+ MG  G +SR+    F   L
Sbjct: 1185 LALKLNVDIIKFVGTATSLNDNWELEHFRSLHTDKPFIGINMGPLGKVSRV----FNTIL 1240

Query: 220  TFGTLENGIVSA-PGQPTIKDLLDLYNFRQMGPDT-KVFGIIGKPVGHSKSPILYNEAFK 277
            T  T ++   SA PGQ T+K++ +   F Q G  + K F I+GKP+ HSKSP L+   + 
Sbjct: 1241 TPVTHKDLPSSAAPGQLTLKEINEY--FGQFGGSSRKKFYIVGKPISHSKSPELHKTFYD 1298

Query: 278  SVGFNGVFVHLLVDDIAKFFQ--TYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAV 335
              G +  F     DD AK F      +++  G + TIP K   +K  +E+   AKSIGA+
Sbjct: 1299 EFGLSHTFDKFETDDAAKVFNDLVKGNDELGGCAVTIPLKIDMLKYVNELTDSAKSIGAL 1358

Query: 336  NCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKA 395
            N II    DG+  G NTD++G    I D L        G   A    + +V+G GG  +A
Sbjct: 1359 NTII-PIGDGRFIGDNTDWIG----IRDSLH-----QAGCEIAPESSVGLVVGGGGTSRA 1408

Query: 396  LAYGAKAKG-ARVVIANRTYDRARELAETV-GGHALSLAD-LENFNPEDGMILANTTSIG 452
              Y     G +++ + NRT  +  E+       + + + D L+  + +D +  A +T  G
Sbjct: 1409 AVYALHQMGCSKIYMLNRTPSKLSEIKNHFPSNYNIHIVDSLDAIDEDDKLDAAVSTVPG 1468

Query: 453  MQPKVDE 459
             +P  D+
Sbjct: 1469 DKPLDDQ 1475

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Pichia pastoris (strain GS115 / ATCC 20864) (taxid: 644223)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q6FIV4|ARO1_CANGA Pentafunctional AROM polypeptide OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ARO1 PE=3 SV=1

 Score =  142 bits (358), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 194/393 (49%), Gaps = 32/393 (8%)

Query: 44   KANASGADLVEIRLDGLKNFNP---RENIKTLIKESP-VPTLFTYRPIWEGGQYDGDENE 99
            KA   G D VE+R+D L N +     + I  L   +  +P +FT R   +GG++  ++ E
Sbjct: 1085 KAITYGCDAVEVRVDHLSNMDEDFVSKQISILRASTDGLPIIFTVRTKKQGGKFPDEDYE 1144

Query: 100  RVDVLRL-AMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQ--YTPSVEDLS 156
             +  L + A+++G DYID+EL +       +   K    K+I S H++   Y     +  
Sbjct: 1145 TLQKLLITALKVGVDYIDLELTLPIGIQYKVLNMK-RNTKIIGSHHDFASAYPWDHSEWE 1203

Query: 157  NLVARIQASGADIVKFATTALDITDVARVFQIT-VHSQVPIIGLVMGERGLISRILCAKF 215
            N   +  A   DIVKF   A    D   + +    H+  P+I + MG  G +SR+L    
Sbjct: 1204 NRYNQALAMDVDIVKFVGMAKSFEDNLMLERFRDSHTTKPLIAINMGAHGRVSRVL---- 1259

Query: 216  GGFLTFGTLEN-GIVSAPGQPTIKDLLDLYNFRQMGPDTKV-FGIIGKPVGHSKSPILYN 273
               LT  T E+   V+APGQ T+ ++  +Y   +MG  TK  F ++G P+GHS+SP+L+N
Sbjct: 1260 NTILTPVTSEHLSEVAAPGQLTVAEINRIYT--EMGGITKKDFFVVGSPIGHSRSPVLHN 1317

Query: 274  EAFKSVGFNGVFVHLLV---DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAK 330
              +  +G    F        +++ K      +N   G + TIP K   +K  DE+   AK
Sbjct: 1318 TGYSVLGLPHHFDKFETTSAEEVKKHLLDNKAN-LGGLAVTIPLKLDIIKYMDELTESAK 1376

Query: 331  SIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG 390
             IGAVN +I    + K  G NTD++        G+R  L VS GV  +++G   +V+GAG
Sbjct: 1377 VIGAVNTVI-PLGNSKFKGDNTDWL--------GIRNSL-VSNGVPESVSGLSGLVVGAG 1426

Query: 391  GAGKALAYGAKAKGA-RVVIANRTYDRARELAE 422
            G  +A  +     G  ++ I NRT ++  EL +
Sbjct: 1427 GTSRAAIFALHKLGCQKIFIVNRTTEKLEELVK 1459

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|A8QCB2|ARO1_MALGO Pentafunctional AROM polypeptide OS=Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) GN=MGL_3989 PE=3 SV=1

 Score =  142 bits (357), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 119/402 (29%), Positives = 199/402 (49%), Gaps = 45/402 (11%)

Query: 47   ASGADLVEIRLDGLK-NFNP-----RENIKTLIKESPVPTLFTYRPIWEGGQYDGDENER 100
            ++G D++E+R+D L  +  P     RE +  L + + +P L+T R + +GG+   + NE 
Sbjct: 1109 SAGVDVLELRVDLLHADGQPSIDDVREQVALLRQYTSLPILYTVRSVSQGGRLPDEANEA 1168

Query: 101  VDVL-RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHN-----YQYTPSVED 154
               L RL + +G +Y+D+EL    +  + +   K  + +++ S H+     +   P++  
Sbjct: 1169 YFALTRLGLRMGCEYVDIELTRPSDGIEELAQAK-GQTRIVASFHDTSGTMHWMAPAMRR 1227

Query: 155  LSNLVARIQASGADIVKFATTALDITDV----ARVFQITVHSQVPIIGLVMGERGLISRI 210
            L    A +    A +V FA T  D  D+     RV Q    +  P+I + M   G +SRI
Sbjct: 1228 LYTR-ACVLGDIAKLVGFARTWQDSLDLESFRTRVAQ---EAPFPLIAINMQAAGQLSRI 1283

Query: 211  LCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPI 270
            +       +T   L   + +APGQ +++D+    +   + P    F + G P+ HS+SP+
Sbjct: 1284 VNPLLTP-VTHPALP--VPAAPGQMSVRDIHHARHLLGLLPKRHFF-LFGSPITHSQSPL 1339

Query: 271  LYNEAFKSVGFNGVFVHLLVDDI-AKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVA 329
            ++N AF+ +G   V+     D + A       + DF G S TIPHK + ++  D V   A
Sbjct: 1340 IHNTAFELLGLPHVYARHETDSVDASVEALVRAGDFGGASVTIPHKLSIMQLLDSVSPHA 1399

Query: 330  KSIGAVNCII--RRQSDGK--LFGYNTDYVGAISAI--EDGLRGRLNVSGGVSSALAGKL 383
            + IGAVN I+  R ++ G   L G NTD+   +  +   DG R R   +           
Sbjct: 1400 QVIGAVNTIVPHRDETTGHMALHGENTDWRAIVDLVAKHDGGRTRACTA----------- 1448

Query: 384  FVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETV 424
             +VIGAGG+ +A  Y     GA R+++ NRT+++A  LAE V
Sbjct: 1449 -LVIGAGGSARAALYAMHKLGASRILLYNRTFEKAVNLAEQV 1489

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) (taxid: 425265)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C8Z543|ARO1_YEAS8 Pentafunctional AROM polypeptide OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=ARO1 PE=3 SV=1

 Score =  138 bits (347), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 194/387 (50%), Gaps = 26/387 (6%)

Query: 49   GADLVEIRLDGLKNFNP---RENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERV-DV 103
            G + VE+R+D L N++     + +  L K +  +P +FT R + +GG +  +E + + ++
Sbjct: 1099 GCEAVEVRVDHLANYSADFVSKQLSILRKATDSIPIIFTVRTMKQGGNFPDEEFKTLREL 1158

Query: 104  LRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQ--YTPSVEDLSNLVAR 161
              +A++ G +++D+EL +  +    +  K+    K+I S H++Q  Y+    +  N   +
Sbjct: 1159 YDIALKNGVEFLDLELTLPTDIQYEVINKRG-NTKIIGSHHDFQGLYSWDDAEWENRFNQ 1217

Query: 162  IQASGADIVKFATTALDITDVARVFQIT-VHSQVPIIGLVMGERGLISRILCAKFGGFLT 220
                  D+VKF  TA++  D  R+      H   P+I + M  +G ISR+L       +T
Sbjct: 1218 ALTLDVDVVKFVGTAVNFEDNLRLEHFRDTHKNKPLIAVNMTSKGSISRVLNNVLTP-VT 1276

Query: 221  FGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVG 280
               L N   +APGQ T+  +  +Y     G + K   ++GKP+GHS+SPIL+N  ++ +G
Sbjct: 1277 SDLLPNS--AAPGQLTVAQINKMYT-SMGGIEPKELFVVGKPIGHSRSPILHNTGYEILG 1333

Query: 281  FNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCI 338
                F     +   + K      + +F G + TIP K   ++  DE+   AK IGAVN +
Sbjct: 1334 LPHKFDKFETESAQLVKEKLLDGNKNFGGAAVTIPLKLDIMQYMDELTDAAKVIGAVNTV 1393

Query: 339  IRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAY 398
            I    + K  G NTD++G  +A+         ++ GV   +     +VIGAGG  +A  Y
Sbjct: 1394 IPL-GNKKFKGDNTDWLGIRNAL---------INNGVPEYVGHTAGLVIGAGGTSRAALY 1443

Query: 399  GAKAKGA-RVVIANRTYDRARELAETV 424
               + G  ++ I NRT  + + L E++
Sbjct: 1444 ALHSLGCKKIFIINRTTSKLKPLIESL 1470

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) (taxid: 643680)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|P08566|ARO1_YEAST Pentafunctional AROM polypeptide OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARO1 PE=1 SV=1

 Score =  138 bits (347), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 194/387 (50%), Gaps = 26/387 (6%)

Query: 49   GADLVEIRLDGLKNFNP---RENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERV-DV 103
            G + VE+R+D L N++     + +  L K +  +P +FT R + +GG +  +E + + ++
Sbjct: 1099 GCEAVEVRVDHLANYSADFVSKQLSILRKATDSIPIIFTVRTMKQGGNFPDEEFKTLREL 1158

Query: 104  LRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQ--YTPSVEDLSNLVAR 161
              +A++ G +++D+EL +  +    +  K+    K+I S H++Q  Y+    +  N   +
Sbjct: 1159 YDIALKNGVEFLDLELTLPTDIQYEVINKRG-NTKIIGSHHDFQGLYSWDDAEWENRFNQ 1217

Query: 162  IQASGADIVKFATTALDITDVARVFQIT-VHSQVPIIGLVMGERGLISRILCAKFGGFLT 220
                  D+VKF  TA++  D  R+      H   P+I + M  +G ISR+L       +T
Sbjct: 1218 ALTLDVDVVKFVGTAVNFEDNLRLEHFRDTHKNKPLIAVNMTSKGSISRVLNNVLTP-VT 1276

Query: 221  FGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVG 280
               L N   +APGQ T+  +  +Y     G + K   ++GKP+GHS+SPIL+N  ++ +G
Sbjct: 1277 SDLLPNS--AAPGQLTVAQINKMYT-SMGGIEPKELFVVGKPIGHSRSPILHNTGYEILG 1333

Query: 281  FNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCI 338
                F     +   + K      + +F G + TIP K   ++  DE+   AK IGAVN +
Sbjct: 1334 LPHKFDKFETESAQLVKEKLLDGNKNFGGAAVTIPLKLDIMQYMDELTDAAKVIGAVNTV 1393

Query: 339  IRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAY 398
            I    + K  G NTD++G  +A+         ++ GV   +     +VIGAGG  +A  Y
Sbjct: 1394 IPL-GNKKFKGDNTDWLGIRNAL---------INNGVPEYVGHTAGLVIGAGGTSRAALY 1443

Query: 399  GAKAKGA-RVVIANRTYDRARELAETV 424
               + G  ++ I NRT  + + L E++
Sbjct: 1444 ALHSLGCKKIFIINRTTSKLKPLIESL 1470

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C5FQ73|ARO1_ARTOC Pentafunctional AROM polypeptide OS=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) GN=MCYG_04845 PE=3 SV=1

 Score =  137 bits (346), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 119/408 (29%), Positives = 194/408 (47%), Gaps = 36/408 (8%)

Query: 37   KMVVDMGKANASGADLVEIRLDGLKNFNPR----------ENIKTLIKESPVPTLFTYRP 86
            ++  D+ +A   G+D +E+R+D LK+ +            E +  L   +  P +FT R 
Sbjct: 1064 QLSADILRAATFGSDAIELRVDLLKDPSSTSGVPSVGYVAEQMSFLRSHASQPLIFTIRT 1123

Query: 87   IWEGGQYDGDENER-VDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHN 145
              +GGQ+  D  ++ +++ +LA+ +G++++D+EL    +   ++   K    K+I S H+
Sbjct: 1124 KAQGGQFPDDAVDKALELYKLAIRMGSEFVDLELSFPNDLLHAVTEMK-GFSKIIASHHD 1182

Query: 146  YQYTPSVEDLSNLVARIQA-SGADIVKFATTALDITDVARVFQITVHSQ----VPIIGLV 200
                 S  + S +    +A    DI+K    A    D   + Q    ++    VPII + 
Sbjct: 1183 VNSQLSWSNGSWIQYYNKALQHGDIIKLIGVAKTFEDNMALQQFKSWAEKSYPVPIIAIN 1242

Query: 201  MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGP-DTKVFGII 259
            MG +G +SRIL  +F   ++   L     +APGQ + KD+        MG  D K F + 
Sbjct: 1243 MGNKGRLSRIL-NRFMTPVSHPALP--FKAAPGQVSAKDIRQALTL--MGELDAKKFALF 1297

Query: 260  GKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAV 319
            GKP+  S+SP L+N  F   GF   +  L  D      +   S+DF G S TIP KE  +
Sbjct: 1298 GKPISASRSPALHNALFTQAGFPHDYGLLETDKAENVEKFIRSDDFGGASVTIPLKEQIM 1357

Query: 320  KCCDEVDTVAKSIGAVNCIIRRQSDG---KLFGYNTDYVGAISAIEDGLRGRLNVSGGVS 376
               DE+   AK IGAVN I+     G   +L GYNTD+ G    ++D        +G + 
Sbjct: 1358 GLLDEISPEAKIIGAVNTIVPITVSGRPPRLIGYNTDWQGMARCLKD--------AGAIC 1409

Query: 377  SALAGKLFVVIGAGGAGKALAYGAKAKG-ARVVIANRTYDRARELAET 423
            S   G+  + IG+GG  +A  Y   + G + + +  RT     +LA +
Sbjct: 1410 SN-NGESALTIGSGGTARAAIYSLHSMGYSPIYLVGRTPSNLSKLASS 1456

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) (taxid: 554155)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	465
224107417	538	dehydroquinate dehydratase/ shikimate de	0.965	0.834	0.819	0.0
255551621	539	shikimate dehydrogenase, putative [Ricin	0.963	0.831	0.819	0.0
359477446	522	PREDICTED: bifunctional 3-dehydroquinate	0.965	0.860	0.816	0.0
58047529	508	3-dehydroquinate dehydratase/shikimate 5	0.948	0.868	0.825	0.0
76782194	536	putative 3-dehydroquinate dehydratase/sh	0.984	0.854	0.776	0.0
356495945	527	PREDICTED: bifunctional 3-dehydroquinate	0.989	0.872	0.765	0.0
297736925	495	unnamed protein product [Vitis vinifera]	0.918	0.862	0.824	0.0
449503035	542	PREDICTED: bifunctional 3-dehydroquinate	0.956	0.821	0.773	0.0
388521847	515	unknown [Medicago truncatula]	0.952	0.860	0.765	0.0
449461453	542	PREDICTED: bifunctional 3-dehydroquinate	0.956	0.821	0.769	0.0

>gi|224107417|ref|XP_002314474.1| dehydroquinate dehydratase/ shikimate dehydrogenase [Populus trichocarpa] gi|222863514|gb|EEF00645.1| dehydroquinate dehydratase/ shikimate dehydrogenase [Populus trichocarpa]

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/449 (81%), Positives = 407/449 (90%)

Query: 16  SGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE 75
           SGG+R+NPTLIC PIM +SVDKM + M +A + GADLVEIRLD LK+FNP  +IKTLI  
Sbjct: 23  SGGVRRNPTLICTPIMADSVDKMAILMAEAKSVGADLVEIRLDSLKDFNPNSDIKTLILH 82

Query: 76  SPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPE 135
           SP+PTLFTYRP+WEGGQY+GDE  R+D LRLAMELGADYIDVEL+VA EFN+ +RG KP 
Sbjct: 83  SPLPTLFTYRPMWEGGQYNGDEKPRLDALRLAMELGADYIDVELKVAHEFNELLRGNKPG 142

Query: 136 KCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVP 195
           KCK+IVSSHNY+ TPSVE+L NLVARIQA+GADIVK ATTALDI+DVAR+FQITVHSQVP
Sbjct: 143 KCKLIVSSHNYENTPSVEELGNLVARIQAAGADIVKIATTALDISDVARIFQITVHSQVP 202

Query: 196 IIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKV 255
           IIGLVMGERGLISRILCAKFGG+LTFGTLE+G+VSAPGQPTIKDLLDLYNFR +GPDTKV
Sbjct: 203 IIGLVMGERGLISRILCAKFGGYLTFGTLESGVVSAPGQPTIKDLLDLYNFRLIGPDTKV 262

Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHK 315
           FGIIGKPVGHSKSP+L+NEAFKSVG NGV+VHLLVDDIA+F QTYSS DFAGFSCTIPHK
Sbjct: 263 FGIIGKPVGHSKSPVLFNEAFKSVGINGVYVHLLVDDIARFLQTYSSTDFAGFSCTIPHK 322

Query: 316 EAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGV 375
           E A KCCDEV  VAKSIGAVNCIIRRQ+DGKLFGYNTDYVGAISAIE+GLR   NVS  V
Sbjct: 323 EDAAKCCDEVHPVAKSIGAVNCIIRRQNDGKLFGYNTDYVGAISAIEEGLRASQNVSNTV 382

Query: 376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLE 435
            S LAGKLFVVIGAGGAGKALAYGAK KGARVVIANRTY+RA+ LA+ +GG A++LADLE
Sbjct: 383 GSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKVLADIIGGDAITLADLE 442

Query: 436 NFNPEDGMILANTTSIGMQPKVDETPIPK 464
           NF+PEDGMILANTTSIGMQPKVDETP+ K
Sbjct: 443 NFHPEDGMILANTTSIGMQPKVDETPVSK 471

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551621|ref|XP_002516856.1| shikimate dehydrogenase, putative [Ricinus communis] gi|223543944|gb|EEF45470.1| shikimate dehydrogenase, putative [Ricinus communis]

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/448 (81%), Positives = 405/448 (90%)

Query: 17  GGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES 76
           GG+RKNPTLIC PIM +SVDKM++++ KA  +GADLVEIRLD LK FN  ++IKTLI  S
Sbjct: 25  GGLRKNPTLICAPIMADSVDKMLINLVKAKENGADLVEIRLDSLKTFNASDDIKTLITRS 84

Query: 77  PVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEK 136
           P+PTLFTYRP WEGG+YDGDENER+D LRLAMELGADYIDVEL+VA +FNDSIRG KP K
Sbjct: 85  PLPTLFTYRPKWEGGEYDGDENERLDALRLAMELGADYIDVELKVAHKFNDSIRGNKPAK 144

Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPI 196
           CKVIVSSHNY  TPSVEDL NLVA IQA+GADIVK ATTALDITDVAR+FQITVHSQVPI
Sbjct: 145 CKVIVSSHNYHNTPSVEDLGNLVADIQAAGADIVKIATTALDITDVARIFQITVHSQVPI 204

Query: 197 IGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVF 256
           IG+VMGERGLISRILCAKFGG+LTFGTLE+GIVSAPGQP IKDLLDLYNFRQ+GPDTKV+
Sbjct: 205 IGIVMGERGLISRILCAKFGGYLTFGTLESGIVSAPGQPMIKDLLDLYNFRQIGPDTKVY 264

Query: 257 GIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKE 316
           GIIGKPVGHSKSP+LYNEAFKSVGFNGV+VHLLVDDIA F QT+SS DFAGFSCTIPHKE
Sbjct: 265 GIIGKPVGHSKSPVLYNEAFKSVGFNGVYVHLLVDDIASFLQTFSSTDFAGFSCTIPHKE 324

Query: 317 AAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVS 376
           AAV CCD +D+VA+SIGAVNCIIRRQ DGKLFGYNTDY GAI+AIE+GLR   N+SG   
Sbjct: 325 AAVDCCDGIDSVARSIGAVNCIIRRQRDGKLFGYNTDYDGAITAIEEGLRVSQNISGAAD 384

Query: 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLEN 436
           S LAGKLFVVIGAGGAGKALAYGAK KGA+VVIANRTY+RA+ LA+ VGG A++LADL N
Sbjct: 385 SPLAGKLFVVIGAGGAGKALAYGAKQKGAKVVIANRTYERAKGLADAVGGVAIALADLGN 444

Query: 437 FNPEDGMILANTTSIGMQPKVDETPIPK 464
           F PE GM+LANTTSIGMQPKV+ETPIPK
Sbjct: 445 FRPESGMVLANTTSIGMQPKVEETPIPK 472

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477446|ref|XP_002277395.2| PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Vitis vinifera]

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/452 (81%), Positives = 402/452 (88%), Gaps = 3/452 (0%)

Query: 16  SGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE 75
           SGGM KN TLICVPIMGE+++KMVVDM KA  SGADLVE+RLD LK FNPR++++ LI++
Sbjct: 3   SGGMSKNSTLICVPIMGETIEKMVVDMSKAKTSGADLVEVRLDTLKRFNPRQDLEVLIRK 62

Query: 76  SPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPE 135
            P+PTLFTYRP WEGGQY+GDEN R D LRLAMELGADY+D+EL+VA EF +SI G+KPE
Sbjct: 63  CPLPTLFTYRPKWEGGQYEGDENSRRDALRLAMELGADYVDIELKVAHEFINSIHGRKPE 122

Query: 136 KCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV- 194
           K KVIVSSHNYQ TPSVEDL NLV  IQA+GADIVK ATTAL+ITDVAR+FQITVHSQV 
Sbjct: 123 KFKVIVSSHNYQNTPSVEDLGNLVVSIQATGADIVKIATTALEITDVARIFQITVHSQVS 182

Query: 195 --PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPD 252
             P+IGLVMGERGLISRILC KF G+LTFG+LE GIVSAPGQPTIKDLL+LYNFRQ+GPD
Sbjct: 183 SVPVIGLVMGERGLISRILCPKFSGYLTFGSLEPGIVSAPGQPTIKDLLNLYNFRQLGPD 242

Query: 253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTI 312
           TKVFG+IGKPV HSKSP LYNEAFKSVGFNGV+VHLLVDDIAKFF TYS+ DFAGFSCTI
Sbjct: 243 TKVFGVIGKPVSHSKSPHLYNEAFKSVGFNGVYVHLLVDDIAKFFHTYSAADFAGFSCTI 302

Query: 313 PHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVS 372
           PHKEAA+KCCDEV  VAKSIGAVNCIIRR SDGKLFGYNTDYVGAISAIEDGLR    +S
Sbjct: 303 PHKEAALKCCDEVSPVAKSIGAVNCIIRRPSDGKLFGYNTDYVGAISAIEDGLRDLHKIS 362

Query: 373 GGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
               S LAGKLFVVIGAGGAGKALAYGAK KGARVVIANRTY RARELA+ VGG ALSLA
Sbjct: 363 STSGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYARARELADAVGGDALSLA 422

Query: 433 DLENFNPEDGMILANTTSIGMQPKVDETPIPK 464
           DL NF+PE+GMILANTTSIGMQPKVDETPI K
Sbjct: 423 DLNNFHPENGMILANTTSIGMQPKVDETPISK 454

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|58047529|gb|AAW65140.1| 3-dehydroquinate dehydratase/shikimate 5-dehydrogenase [Juglans regia]

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/441 (82%), Positives = 394/441 (89%)

Query: 24  TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFT 83
           TL+C PIM ESVDKMV++M KA    ADLVEIRLD LK+FNP  ++KT+IK SP+PTLFT
Sbjct: 1   TLVCAPIMAESVDKMVINMNKAKQGDADLVEIRLDSLKSFNPSNDLKTIIKASPLPTLFT 60

Query: 84  YRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSS 143
           YRP WEGGQYDGDE +R+D LRLAME GADYIDVELQVA EFNDSI G+KPE  KVIVSS
Sbjct: 61  YRPKWEGGQYDGDEKKRLDALRLAMEFGADYIDVELQVACEFNDSIYGRKPENSKVIVSS 120

Query: 144 HNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGE 203
           HNYQ TPS EDL NLVARIQA+GADIVK ATTAL+I DVAR+FQITVHSQVPIIG+VMGE
Sbjct: 121 HNYQDTPSAEDLGNLVARIQATGADIVKIATTALEIADVARIFQITVHSQVPIIGIVMGE 180

Query: 204 RGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPV 263
           RG +SRILC KFGGFLTFGT+E+GIVSAPGQPT+KDLL LYN R++GPDTKVFGIIGKPV
Sbjct: 181 RGFMSRILCPKFGGFLTFGTIESGIVSAPGQPTMKDLLHLYNLRRIGPDTKVFGIIGKPV 240

Query: 264 GHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCD 323
            HSKSPILYNEAFKSV FNGV++ LLVDDIA F QTYSS DFAGFSCTIPHKEAA+KCCD
Sbjct: 241 HHSKSPILYNEAFKSVCFNGVYIPLLVDDIANFLQTYSSTDFAGFSCTIPHKEAALKCCD 300

Query: 324 EVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKL 383
           EVD VAKSIGAVNCIIRR +DGKL GYNTDYVGAISAIEDGLRG  N S    S LAGKL
Sbjct: 301 EVDPVAKSIGAVNCIIRRPTDGKLVGYNTDYVGAISAIEDGLRGSHNSSNTADSPLAGKL 360

Query: 384 FVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGM 443
           FVVIGAGGAGKALAYGAK KGARVVIANRTYDRARELA+T+GG ALSLADL+NF+PEDGM
Sbjct: 361 FVVIGAGGAGKALAYGAKEKGARVVIANRTYDRARELADTIGGDALSLADLDNFHPEDGM 420

Query: 444 ILANTTSIGMQPKVDETPIPK 464
           ILAN+TSIGMQPKVDETPIPK
Sbjct: 421 ILANSTSIGMQPKVDETPIPK 441

Source: Juglans regia

Species: Juglans regia

Genus: Juglans

Family: Juglandaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|76782194|gb|ABA54867.1| putative 3-dehydroquinate dehydratase/shikimate dehydrogenase [Fagus sylvatica]

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/475 (77%), Positives = 409/475 (86%), Gaps = 17/475 (3%)

Query: 1   MESPNLLVASGS---KLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRL 57
           M+S N+L+AS S   ++  G +RKNPTL+C PIM ESVDKMV++M KA   GADLVEIRL
Sbjct: 1   MDSTNVLLASSSASLQIGGGEIRKNPTLVCAPIMAESVDKMVINMDKAKQGGADLVEIRL 60

Query: 58  DGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDV 117
           D LK+FNP  ++KTLIKE P+PTLFTYRP WEGGQYDGDE +R+D LRLAME GADYIDV
Sbjct: 61  DSLKSFNPNGDLKTLIKECPLPTLFTYRPKWEGGQYDGDEKKRLDALRLAMEFGADYIDV 120

Query: 118 ELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTAL 177
           ELQVA+EFN+SI GKKPE  KVIVSSHNYQ TPSVEDL NLVARIQA+GADIVKFATTAL
Sbjct: 121 ELQVAQEFNESIYGKKPEMFKVIVSSHNYQNTPSVEDLGNLVARIQATGADIVKFATTAL 180

Query: 178 DITDVARVFQITVHSQ---VPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQ 234
           +ITDVAR+FQI VHSQ   VPII +VMGERG ISRILC KFGGFL+FGT+E+GIVSAPGQ
Sbjct: 181 EITDVARIFQIIVHSQVSSVPIIAIVMGERGFISRILCPKFGGFLSFGTIESGIVSAPGQ 240

Query: 235 PTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIA 294
           P +KDLL LYNFRQ+GPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGV+V      ++
Sbjct: 241 PIMKDLLHLYNFRQIGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVYV------LS 294

Query: 295 KFFQTYSSND-----FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFG 349
            +     S D     FAGFS TIPHKEAA+KCCDEVD VAKSIGAVNCI+RR +DGK+FG
Sbjct: 295 WWMTCKISPDLLILRFAGFSITIPHKEAALKCCDEVDPVAKSIGAVNCIVRRSTDGKIFG 354

Query: 350 YNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVI 409
           YNTDYVGAISAIEDGLRG  N+S    S LAGKLFVVIGAGGAGKALAYGAK KGARVVI
Sbjct: 355 YNTDYVGAISAIEDGLRGSKNISYAADSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVI 414

Query: 410 ANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPK 464
           ANRTY+RA+E+A+TVGG ALSLADLENF+PEDGMILANTTSIGMQPKVDETPIPK
Sbjct: 415 ANRTYERAKEIADTVGGQALSLADLENFHPEDGMILANTTSIGMQPKVDETPIPK 469

Source: Fagus sylvatica

Species: Fagus sylvatica

Genus: Fagus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495945|ref|XP_003516831.1| PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Glycine max]

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/464 (76%), Positives = 396/464 (85%), Gaps = 4/464 (0%)

Query: 1   MESPNLLVASGSKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGL 60
           M+SPN L    S   + G RKN TLICVPIMGESV+KM +D+ KA A GADLVEIRLD L
Sbjct: 1   MDSPNAL----STAPAAGSRKNATLICVPIMGESVEKMEIDVDKAKAGGADLVEIRLDSL 56

Query: 61  KNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQ 120
           K F+P  ++   I+   +P LFTYRP WEGG YDGDEN+R+D LRLAMELGADYID+ELQ
Sbjct: 57  KTFDPYRDLNAFIQHRSLPLLFTYRPKWEGGMYDGDENKRLDALRLAMELGADYIDIELQ 116

Query: 121 VAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDIT 180
           VA EF DSIRGK   K KVIVSSHNYQ TPS+EDL NLVARIQA+GADIVK ATTALDIT
Sbjct: 117 VAHEFYDSIRGKTFNKTKVIVSSHNYQLTPSIEDLGNLVARIQATGADIVKIATTALDIT 176

Query: 181 DVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
           DVAR+FQI VHSQVP IGLVMG+RGLISRIL AKFGG+LTFGTLE+G+VSAPGQPT+KDL
Sbjct: 177 DVARMFQIMVHSQVPFIGLVMGDRGLISRILSAKFGGYLTFGTLESGVVSAPGQPTLKDL 236

Query: 241 LDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTY 300
           L LYN RQ+ PDTKVFGIIGKPVGHSKSPIL+NE FKS+G NGV++ LLVDD+A F +TY
Sbjct: 237 LYLYNLRQLAPDTKVFGIIGKPVGHSKSPILFNEVFKSIGLNGVYLFLLVDDLANFLRTY 296

Query: 301 SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISA 360
           SS DF GFS TIPHKE A+KCCDEVD VAKSIGAVNCI+RR +DGKL GYNTDYVGAI+A
Sbjct: 297 SSTDFVGFSVTIPHKETALKCCDEVDPVAKSIGAVNCIVRRPTDGKLIGYNTDYVGAITA 356

Query: 361 IEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRAREL 420
           IE+GLRG+ N S    S LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYD AR+L
Sbjct: 357 IENGLRGKHNGSSTTISPLAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDHARKL 416

Query: 421 AETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPK 464
           A  +GG AL+LADL+N++PEDGMILANTTSIGMQPKVDETP+ K
Sbjct: 417 AYAIGGDALALADLDNYHPEDGMILANTTSIGMQPKVDETPVSK 460

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736925|emb|CBI26126.3| unnamed protein product [Vitis vinifera]

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/427 (82%), Positives = 382/427 (89%)

Query: 38  MVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDE 97
           MVVDM KA  SGADLVE+RLD LK FNPR++++ LI++ P+PTLFTYRP WEGGQY+GDE
Sbjct: 1   MVVDMSKAKTSGADLVEVRLDTLKRFNPRQDLEVLIRKCPLPTLFTYRPKWEGGQYEGDE 60

Query: 98  NERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSN 157
           N R D LRLAMELGADY+D+EL+VA EF +SI G+KPEK KVIVSSHNYQ TPSVEDL N
Sbjct: 61  NSRRDALRLAMELGADYVDIELKVAHEFINSIHGRKPEKFKVIVSSHNYQNTPSVEDLGN 120

Query: 158 LVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGG 217
           LV  IQA+GADIVK ATTAL+ITDVAR+FQITVHSQVP+IGLVMGERGLISRILC KF G
Sbjct: 121 LVVSIQATGADIVKIATTALEITDVARIFQITVHSQVPVIGLVMGERGLISRILCPKFSG 180

Query: 218 FLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFK 277
           +LTFG+LE GIVSAPGQPTIKDLL+LYNFRQ+GPDTKVFG+IGKPV HSKSP LYNEAFK
Sbjct: 181 YLTFGSLEPGIVSAPGQPTIKDLLNLYNFRQLGPDTKVFGVIGKPVSHSKSPHLYNEAFK 240

Query: 278 SVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNC 337
           SVGFNGV+VHLLVDDIAKFF TYS+ DFAGFSCTIPHKEAA+KCCDEV  VAKSIGAVNC
Sbjct: 241 SVGFNGVYVHLLVDDIAKFFHTYSAADFAGFSCTIPHKEAALKCCDEVSPVAKSIGAVNC 300

Query: 338 IIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALA 397
           IIRR SDGKLFGYNTDYVGAISAIEDGLR    +S    S LAGKLFVVIGAGGAGKALA
Sbjct: 301 IIRRPSDGKLFGYNTDYVGAISAIEDGLRDLHKISSTSGSPLAGKLFVVIGAGGAGKALA 360

Query: 398 YGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKV 457
           YGAK KGARVVIANRTY RARELA+ VGG ALSLADL NF+PE+GMILANTTSIGMQPKV
Sbjct: 361 YGAKEKGARVVIANRTYARARELADAVGGDALSLADLNNFHPENGMILANTTSIGMQPKV 420

Query: 458 DETPIPK 464
           DETPI K
Sbjct: 421 DETPISK 427

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503035|ref|XP_004161812.1| PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Cucumis sativus]

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/446 (77%), Positives = 388/446 (86%), Gaps = 1/446 (0%)

Query: 19  MRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPV 78
           +++N +L+CVPIM +S D M+ D  KA  SGADLVEIRLD LK FN + ++ TL+KE P+
Sbjct: 28  IKRNSSLVCVPIMADSADLMIADARKAKTSGADLVEIRLDSLKIFNQQTDLGTLVKECPL 87

Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCK 138
           PTLFTYRP WEGGQYDGDENER++VLRL MELGADY+DVELQVAREF DSIRGKKPEKCK
Sbjct: 88  PTLFTYRPKWEGGQYDGDENERLEVLRLVMELGADYVDVELQVAREFIDSIRGKKPEKCK 147

Query: 139 VIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIG 198
           VIVSSHNY+ TPS++DL  LVARIQ SGADIVK ATTA DITDV+R+F I VHSQVP+IG
Sbjct: 148 VIVSSHNYEETPSLDDLGKLVARIQESGADIVKIATTARDITDVSRIFHIIVHSQVPLIG 207

Query: 199 LVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGI 258
           LVMGERGLISRILCAKFGG+LTF TLE GIVSAPGQPTI+DLL LYNFRQ+GPDTKV+GI
Sbjct: 208 LVMGERGLISRILCAKFGGYLTFATLEAGIVSAPGQPTIQDLLTLYNFRQIGPDTKVYGI 267

Query: 259 IGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAA 318
           IGKPVGHSKSP+L+NEAFKS+ FNGV+VH LVDDI  F QTYSS DFAGFSCTIPHKEAA
Sbjct: 268 IGKPVGHSKSPMLFNEAFKSIRFNGVYVHYLVDDIVNFLQTYSSLDFAGFSCTIPHKEAA 327

Query: 319 VKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSA 378
            K CDEVD VAKSIGAVNCI+RR  DGK  GYNTDYVGAISAIE+ L+G    S    S 
Sbjct: 328 AKFCDEVDPVAKSIGAVNCIVRRH-DGKFCGYNTDYVGAISAIEEKLQGDYTGSPLSGSP 386

Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFN 438
           L G+LFVVIGAGGAGKALAYGAK KGA+V+IANRTY+RA+ELA+T+GG A++LADL NF+
Sbjct: 387 LFGRLFVVIGAGGAGKALAYGAKEKGAKVMIANRTYERAKELADTIGGDAITLADLNNFH 446

Query: 439 PEDGMILANTTSIGMQPKVDETPIPK 464
           PED MILANTTSIGMQPKV+ETPI K
Sbjct: 447 PEDNMILANTTSIGMQPKVEETPIAK 472

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521847|gb|AFK48985.1| unknown [Medicago truncatula]

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/447 (76%), Positives = 391/447 (87%), Gaps = 4/447 (0%)

Query: 22  NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES-PVPT 80
           N TLICVPIMGE++ KM+ D+ KA  +GADLVEIRLD LK FNP +++ T +++   +P 
Sbjct: 2   NATLICVPIMGETIQKMIADIQKAKLNGADLVEIRLDSLKTFNPSQDLNTFMQQHHSLPF 61

Query: 81  LFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVI 140
           LFTYRP WEGG Y+GDEN+R+D LRLAMEL ADYID+EL+VA +F DSIRGK   K KVI
Sbjct: 62  LFTYRPKWEGGMYEGDENQRLDALRLAMELEADYIDIELKVAHQFYDSIRGKTYNKTKVI 121

Query: 141 VSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV---PII 197
           VSSHNYQ TPSVEDL NLVARIQA+GADIVK ATTA++ITDVAR+F+I VHSQV   P I
Sbjct: 122 VSSHNYQQTPSVEDLGNLVARIQATGADIVKIATTAVEITDVARMFEIMVHSQVRHVPFI 181

Query: 198 GLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFG 257
           GLVMG+RGLISRILCAKFGG+LTFGTLE+G+VSAPGQPT+KDLL LYNFRQ+GPDTKV+G
Sbjct: 182 GLVMGDRGLISRILCAKFGGYLTFGTLESGVVSAPGQPTLKDLLHLYNFRQIGPDTKVYG 241

Query: 258 IIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEA 317
           I+GKPV HSKSPIL+NEAFK++GF+GVFV LLVDD+A F +TYSS DF GFS TIPHKEA
Sbjct: 242 IVGKPVSHSKSPILFNEAFKTIGFDGVFVFLLVDDLANFLRTYSSTDFVGFSVTIPHKEA 301

Query: 318 AVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSS 377
           A+KCCDEVD VAKSIGAVNC++RR +DGKL GYNTDYVGAISAIEDGLRG+   SG   S
Sbjct: 302 ALKCCDEVDPVAKSIGAVNCVVRRPTDGKLIGYNTDYVGAISAIEDGLRGKHIDSGTAVS 361

Query: 378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENF 437
            LAGKLFVVIGAGGAGKALAYGAK KGAR+VIANRTYDRARELA+ +GG AL+L DL+N+
Sbjct: 362 PLAGKLFVVIGAGGAGKALAYGAKEKGARIVIANRTYDRARELADVIGGDALTLNDLDNY 421

Query: 438 NPEDGMILANTTSIGMQPKVDETPIPK 464
           +PEDGMILANTTSIGMQPKVDETPI K
Sbjct: 422 HPEDGMILANTTSIGMQPKVDETPISK 448

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461453|ref|XP_004148456.1| PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Cucumis sativus]

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/446 (76%), Positives = 386/446 (86%), Gaps = 1/446 (0%)

Query: 19  MRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPV 78
           +++N +L+CVPIM +S D M+ D  KA  SGADLVEIRLD LK FN + ++ TL+KE P+
Sbjct: 28  IKRNSSLVCVPIMADSADLMIADARKAKTSGADLVEIRLDSLKIFNQQTDLGTLVKECPL 87

Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCK 138
           PTLFTYRP WEGGQYDGDENER++VLRL MELGADY+DVELQVAREF DSIRGKKPEKCK
Sbjct: 88  PTLFTYRPKWEGGQYDGDENERLEVLRLVMELGADYVDVELQVAREFIDSIRGKKPEKCK 147

Query: 139 VIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIG 198
           VIVSSHNY+ TPS++DL  LVARIQ SGADIVK ATTA DITDV+R+F I VHSQVP+IG
Sbjct: 148 VIVSSHNYEETPSLDDLGKLVARIQESGADIVKIATTARDITDVSRIFHIIVHSQVPLIG 207

Query: 199 LVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGI 258
           LVMGERGLISRILCAKFGG+LTF TLE GIVSAPGQPTI+DLL LYNFRQ+GPDTKV+GI
Sbjct: 208 LVMGERGLISRILCAKFGGYLTFATLEAGIVSAPGQPTIQDLLTLYNFRQIGPDTKVYGI 267

Query: 259 IGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAA 318
           IGKPVGHSKSP+L+NEAFKS+ FNGV+VH LVDDI  F QTYSS DFAGFSCTIPHKEAA
Sbjct: 268 IGKPVGHSKSPMLFNEAFKSIRFNGVYVHYLVDDIVNFLQTYSSLDFAGFSCTIPHKEAA 327

Query: 319 VKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSA 378
            K CDEVD VAK I AVNCI+RR  DGK  GYNTDYVGAISAIE+ L+G    S    S 
Sbjct: 328 AKFCDEVDPVAKVIXAVNCIVRRH-DGKFCGYNTDYVGAISAIEEKLQGDYTGSPLSGSP 386

Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFN 438
           L G+LFVVIGAGGAGKALAYGAK KGA+V+IANRTY+RA+ELA+T+GG A++LADL NF+
Sbjct: 387 LFGRLFVVIGAGGAGKALAYGAKEKGAKVMIANRTYERAKELADTIGGDAITLADLNNFH 446

Query: 439 PEDGMILANTTSIGMQPKVDETPIPK 464
           PED MILANTTSIGMQPKV+ETPI K
Sbjct: 447 PEDNMILANTTSIGMQPKVEETPIAK 472

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	465
TAIR|locus:2081036	603	MEE32 "MATERNAL EFFECT EMBRYO	0.997	0.769	0.701	2.7e-171
SGD|S000002534	1588	ARO1 "Pentafunctional arom pro	0.701	0.205	0.292	1e-28
TIGR_CMR|CBU_2075	233	CBU_2075 "3-dehydroquinate deh	0.462	0.922	0.32	5e-28
TIGR_CMR|BA_4561	308	BA_4561 "shikimate 5-dehydroge	0.421	0.636	0.333	4.3e-26
POMBASE|SPAC1834.02	1573	aro1 "pentafunctional aromatic	0.673	0.198	0.315	1.5e-25
ASPGD|ASPL0000055969	1583	aromA [Emericella nidulans (ta	0.668	0.196	0.303	2.9e-21
CGD|CAL0004346	1551	ARO1 [Candida albicans (taxid:	0.761	0.228	0.276	4.8e-21
TIGR_CMR|DET_0466	222	DET_0466 "3-dehydroquinate deh	0.449	0.941	0.325	1.3e-20
TIGR_CMR|CHY_0623	280	CHY_0623 "shikimate 5-dehydrog	0.421	0.7	0.313	2.8e-20
TIGR_CMR|SPO_3891	277	SPO_3891 "shikimate 5-dehydrog	0.419	0.703	0.339	7.7e-20

TAIR|locus:2081036 MEE32 "MATERNAL EFFECT EMBRYO ARREST 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 1665 (591.2 bits), Expect = 2.7e-171, P = 2.7e-171
 Identities = 329/469 (70%), Positives = 383/469 (81%)

Query:     1 MESPNLLVASGS---KLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRL 57
             ME  N+ VAS S   ++ S  + KNP+LIC P+M +S+DKMV++  KA+  GADLVEIRL
Sbjct:    68 MEPSNVYVASNSTEMEIGSHDIVKNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRL 127

Query:    58 DGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDV 117
             D LK+FNP E++KT+IK+SP+PTLFTYRP WEGGQY+GDENER DVLRLAMELGADYIDV
Sbjct:   128 DWLKDFNPLEDLKTIIKKSPLPTLFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDV 187

Query:   118 ELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTAL 177
             ELQVA EF  SI GKKP K KVIVSSHNYQ TPSVEDL  LVARIQ +GADIVK ATTA+
Sbjct:   188 ELQVASEFIKSIDGKKPGKFKVIVSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAV 247

Query:   178 DITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTI 237
             DI DVAR+F IT  +QVP IGLVMGERGL+SRILC+KFGG+LTFGTL++  VSAPGQPTI
Sbjct:   248 DIADVARMFHITSKAQVPTIGLVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTI 307

Query:   238 KDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFF 297
             KDLLDLYNFR++GPDTKV+GIIGKPV HSKSPI++N+AFKSV FNGV+VHLLVD++  F 
Sbjct:   308 KDLLDLYNFRRIGPDTKVYGIIGKPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFL 367

Query:   298 QTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGA 357
             Q YSS+DFAGFSCTIPHKEAA++CCDEVD +AKSIGAVN I+RR+SDGKL GYNTD +G+
Sbjct:   368 QAYSSSDFAGFSCTIPHKEAALQCCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGS 427

Query:   358 ISAIEDGLRGRLNVSG--GVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYD 415
             ISAIEDGLR   + S     SS LA K  VVI                  +VVIANRTY+
Sbjct:   428 ISAIEDGLRSSGDPSSVPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYE 487

Query:   416 RARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPK 464
             RA ELAE +GG ALSL DL+N++PEDGM+LANTTS+GMQP V+ETPI K
Sbjct:   488 RALELAEAIGGKALSLTDLDNYHPEDGMVLANTTSMGMQPNVEETPISK 536

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA;IDA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA;IDA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019632 "shikimate metabolic process" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

SGD|S000002534 ARO1 "Pentafunctional arom protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 334 (122.6 bits), Expect = 1.0e-28, P = 1.0e-28
 Identities = 101/345 (29%), Positives = 176/345 (51%)

Query:    49 GADLVEIRLDGLKNFNP---RENIKTLIKESP-VPTLFTYRPIWEGGQYDGDENERV-DV 103
             G + VE+R+D L N++     + +  L K +  +P +FT R + +GG +  +E + + ++
Sbjct:  1099 GCEAVEVRVDHLANYSADFVSKQLSILRKATDSIPIIFTVRTMKQGGNFPDEEFKTLREL 1158

Query:   104 LRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLS--NLVAR 161
               +A++ G +++D+EL +  +    +  K+    K+I S H++Q   S +D    N   +
Sbjct:  1159 YDIALKNGVEFLDLELTLPTDIQYEVINKRGNT-KIIGSHHDFQGLYSWDDAEWENRFNQ 1217

Query:   162 IQASGADIVKFATTALDITDVARV--FQITVHSQVPIIGLVMGERGLISRILCAKFGGFL 219
                   D+VKF  TA++  D  R+  F+ T H   P+I + M  +G ISR+L       +
Sbjct:  1218 ALTLDVDVVKFVGTAVNFEDNLRLEHFRDT-HKNKPLIAVNMTSKGSISRVLNNVLTP-V 1275

Query:   220 TFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSV 279
             T   L N   +APGQ T+  +  +Y     G + K   ++GKP+GHS+SPIL+N  ++ +
Sbjct:  1276 TSDLLPNS--AAPGQLTVAQINKMYT-SMGGIEPKELFVVGKPIGHSRSPILHNTGYEIL 1332

Query:   280 GFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNC 337
             G    F     +   + K      + +F G + TIP K   ++  DE+   AK IGAVN 
Sbjct:  1333 GLPHKFDKFETESAQLVKEKLLDGNKNFGGAAVTIPLKLDIMQYMDELTDAAKVIGAVNT 1392

Query:   338 IIRRQSDGKLFGYNTDYVGAISA-IEDGLRGRLNVSGGVSSALAG 381
             +I    + K  G NTD++G  +A I +G+   +  + G+     G
Sbjct:  1393 VIPL-GNKKFKGDNTDWLGIRNALINNGVPEYVGHTAGLVIGAGG 1436

GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=IEA;IDA

GO:0004765 "shikimate kinase activity" evidence=IEA;IDA

GO:0003856 "3-dehydroquinate synthase activity" evidence=IEA;IDA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA;IDA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

GO:0009423 "chorismate biosynthetic process" evidence=IEA;TAS

TIGR_CMR|CBU_2075 CBU_2075 "3-dehydroquinate dehydratase, type I" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 72/225 (32%), Positives = 129/225 (57%)

Query:    22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTL 81
             N   ICV ++G+++++ +  + +A  +  D VE+R+D L+  NP   ++ +   +    +
Sbjct:     3 NTPRICVVVIGKTLEEFLSQL-EAAQTAVDFVELRIDYLEQINPNW-VRIIKNHTHKKAI 60

Query:    82 FTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIV 141
                R   +GG++ G    + ++L+   +LG DY+D++L VA +   SI  KK    K+I+
Sbjct:    61 LCCRARADGGKFLGTPEAQQEILQAGNDLGFDYLDIDLPVANKI--SIHEKK---AKIII 115

Query:   142 SSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQ--VPIIGL 199
             S HN+ +TP + +L+ L+  ++    D+ KFAT +    DV  +F++ ++ +    +I L
Sbjct:   116 SYHNFLHTPPITELNFLLENMRLFNPDVFKFATKSEQYEDVKTLFKLLINKKNNENMIVL 175

Query:   200 VMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLY 244
              MGE+G I R+L    GG+LTF ++ NG +SAPGQ   K + D Y
Sbjct:   176 GMGEQGKIIRLLSPLLGGYLTFSSI-NGAISAPGQIDFKTMQDFY 219

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=ISS

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=ISS

TIGR_CMR|BA_4561 BA_4561 "shikimate 5-dehydrogenase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 296 (109.3 bits), Expect = 4.3e-26, P = 4.3e-26
 Identities = 72/216 (33%), Positives = 121/216 (56%)

Query:   254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSCT 311
             +++G+IG P+GHS SP+++N+AF+ +  +  +   LV +  + +  +   +   +GF+ T
Sbjct:     3 QLYGVIGNPIGHSLSPVMHNDAFEHLKMDAHYHAFLVKEEVLGEAVRGLKALGISGFNVT 62

Query:   312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV 371
              PHK A +   DE+D +AK IGAVN ++ +  DGKL GYNTD +G + A++       ++
Sbjct:    63 TPHKVAIMDYLDEIDPLAKQIGAVNTVVHK--DGKLIGYNTDGIGFVRALQ-------SI 113

Query:   372 SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVV-IANRTYDRAREL--AETVGGHA 428
             S   S  L  K  +++                  + + +ANRT D+A+EL  A T   H+
Sbjct:   114 S---SEPLQEKRILLLGAGGASRAIYFSLADAGVKEIDVANRTVDKAKELIAACTATVHS 170

Query:   429 LSLADLENFNPEDGM--ILANTTSIGMQPKVDETPI 462
             ++L+ LE    E G   I+  TT+IGM P+V+ TP+
Sbjct:   171 VALS-LEKATKEQGNYDIIIQTTTIGMHPRVEHTPL 205

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

POMBASE|SPAC1834.02 aro1 "pentafunctional aromatic polypeptide Aro1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 316 (116.3 bits), Expect = 1.5e-25, P = 1.5e-25
 Identities = 107/339 (31%), Positives = 171/339 (50%)

Query:    49 GADLVEIRLDGLKNFNPRENIKTL--IKE--------SPVPTLFTYRPIWEGGQYDGDEN 98
             G D +E+R+D LK+      I +L  + E        + +P +FT R I +GG +  D+ 
Sbjct:  1077 GCDAIEVRVDYLKDPKSSNGISSLDFVAEQISLLRCSTTLPIIFTIRTISQGGLFPNDKE 1136

Query:    99 ERVDVLRL-AMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSN 157
             E    L L AM  G D++DVEL  + E  + +   K    K+I+S H+   T S      
Sbjct:  1137 EEAKELMLSAMRYGCDFVDVELGWSSETINILYQHKGYT-KLIMSWHDLSGTWSWARPHE 1195

Query:   158 LVARIQ--ASGADIVKFATTALDITDVARV--FQ--ITVHSQVPIIGLVMGERGLISRIL 211
              + +++  +S AD++K    A ++ D   +  F+  IT    +P+I   MG  G +SRIL
Sbjct:  1196 WMQKVELASSYADVIKLVGMANNLNDNLELEEFRTRITNSMDIPLILFNMGRFGQLSRIL 1255

Query:   212 CAKFGGFLTFGTLENGIVSAPGQPTIKDLLDL-YNFRQMGPDTKVFGIIGKPVGHSKSPI 270
               KF   +T   L +   +APGQ T+K L +      ++ P+ K F + GKP+ HS+SPI
Sbjct:  1256 -NKFMTPVTHPLLPSK--AAPGQLTVKQLNEARVLIGEILPE-KFF-LFGKPIKHSRSPI 1310

Query:   271 LYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAK 330
             L++ A++ +G    +     D + +  +  +  DF G + TIP+K + +K  DE+   A+
Sbjct:  1311 LHSTAYELLGLPHTYEAFETDTVDEVQKVLNLPDFGGANVTIPYKLSVMKFMDELSDEAR 1370

Query:   331 SIGAVNCIIRRQSDGKLF--GYNTDYVGAISAIEDGLRG 367
               GAVN II  +   KL   G NTD+ G      + L G
Sbjct:  1371 FFGAVNTIIPIRIGDKLVLRGDNTDWRGIYDTFANALDG 1409

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA

GO:0003856 "3-dehydroquinate synthase activity" evidence=IEA

GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=IEA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA

GO:0004765 "shikimate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA

GO:0009423 "chorismate biosynthetic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

ASPGD|ASPL0000055969 aromA [Emericella nidulans (taxid:162425)]

 Score = 281 (104.0 bits), Expect = 2.9e-21, P = 2.9e-21
 Identities = 104/343 (30%), Positives = 162/343 (47%)

Query:    49 GADLVEIRLDGLK-----NFNPR-----ENIKTLIKESPVPTLFTYRPIWEGGQY-DGDE 97
             G+D VE+R+D LK     N  P      E +  L     +P +FT R   +GG++ D   
Sbjct:  1074 GSDAVELRVDLLKDPASNNDIPSVDYVVEQLSFLRSRVTLPIIFTIRTQSQGGRFPDNAH 1133

Query:    98 NERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSN 157
             +  +++ RLA   G +++D+E+    +   ++   K    K+I S H+ +   S  ++S 
Sbjct:  1134 DAALELYRLAFRSGCEFVDLEIAFPEDMLRAVTEMKGFS-KIIASHHDPKGELSWANMSW 1192

Query:   158 LVARIQA-SGADIVKFATTALDITD--VARVFQ---ITVHSQVPIIGLVMGERGLISRIL 211
             +    +A    DI+K    A +I D    R F+      H  VP+I + MG++G +SRIL
Sbjct:  1193 IKFYNKALEYGDIIKLVGVARNIDDNTALRKFKNWAAEAHD-VPLIAINMGDQGQLSRIL 1251

Query:   212 CAKFGGFLTFGTLEN-GIVSAPGQPTIKDLLDLYNFRQMGP-DTKVFGIIGKPVGHSKSP 269
                  GF+T  +  +    +APGQ +  ++        MG    K F I G P+  S+SP
Sbjct:  1252 ----NGFMTPVSHPSLPFKAAPGQLSATEIRK--GLSLMGEIKPKKFAIFGSPISQSRSP 1305

Query:   270 ILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVA 329
              L+N  F  VG    +  L   +     +   S DF G S TIP K   +   DEV   A
Sbjct:  1306 ALHNTLFAQVGLPHNYTRLETTNAQDVQEFIRSPDFGGASVTIPLKLDIMPLLDEVAAEA 1365

Query:   330 KSIGAVNCIIR----RQSDGKLFGYNTDYVGAISAIED-GLRG 367
             + IGAVN II     + +  +L G NTD+ G I ++   G+ G
Sbjct:  1366 EIIGAVNTIIPVSTGKNTPSRLVGRNTDWQGMILSLRKAGVYG 1408

GO:0070403 "NAD+ binding" evidence=IPI

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IDA;RCA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=RCA;IDA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=RCA;IDA

GO:0004765 "shikimate kinase activity" evidence=RCA;IDA

GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=RCA;IDA

GO:0009423 "chorismate biosynthetic process" evidence=IDA

GO:0003856 "3-dehydroquinate synthase activity" evidence=RCA

GO:0005737 "cytoplasm" evidence=IEA

CGD|CAL0004346 ARO1 [Candida albicans (taxid:5476)]

 Score = 279 (103.3 bits), Expect = 4.8e-21, P = 4.8e-21
 Identities = 105/380 (27%), Positives = 183/380 (48%)

Query:    13 KLVSGGMRKNPTL---ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR--- 66
             KL++G  R    +     V +    ++++V D+ ++   GAD VE+R+D  K+ +     
Sbjct:  1029 KLITGAERPVVPVGRSAAVVLTSPDLNEVVRDL-ESITIGADAVELRVDLFKDTSAEFVA 1087

Query:    67 ENIKTLIKESPVPTLFTYRPIWEGGQYDGDEN--ERVDVLRLAMELGADYIDVELQVARE 124
               I  + K + +P ++T R + +GG++  DEN  E   +L L + LG  Y+D++L    E
Sbjct:  1088 AQIAVIRKHADLPIIYTVRTMSQGGKFP-DENVDELKSLLLLGIRLGVAYVDLQLTAPNE 1146

Query:   125 FNDSIRGKKPEKCKVIVSSH--NYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDV 182
               + I  KK    +VI +    N +   +  +  N   +  +  ADIV+    A  I D 
Sbjct:  1147 LIEEISSKKGFT-RVIGTYQDINGELKWNNVEWKNKYNQGVSMNADIVRLVGKANSIQDN 1205

Query:   183 ARVFQITVHSQV-PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQ-PTIKDL 240
               +      + + P+I   +G +G +S++L     G  TF  + + ++    +  TI +L
Sbjct:  1206 LDLENFKKQNTLKPLIAFNLGSQGKLSQVL----NG--TFTPISHKLLPNDEEFLTIGEL 1259

Query:   241 LDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTY 300
                Y F   G   K F +IG P+ HS+SP L+N  +K++     F      D+   +   
Sbjct:  1260 NQTY-FDIGGFTAKKFWVIGSPIEHSRSPNLHNAGYKALNLPYQFGRFEATDVDVVYDNL 1318

Query:   301 SSN-DFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AI 358
              +  DF G + T+P K   +K   ++   A++IGAVN +I    +G  FG NTD+VG + 
Sbjct:  1319 INKPDFGGLAITMPLKLDIMKFATKLSDAAETIGAVNTLI--PIEGGYFGDNTDWVGISN 1376

Query:   359 SAIEDGLRGRLNVSGGVSSA 378
             S I  G+  + + +G V  A
Sbjct:  1377 SFIRAGVPPKSSSNGLVVGA 1396

GO:0005829 "cytosol" evidence=IEA

GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=IEA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA

GO:0004765 "shikimate kinase activity" evidence=IEA

GO:0003856 "3-dehydroquinate synthase activity" evidence=IEA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA

TIGR_CMR|DET_0466 DET_0466 "3-dehydroquinate dehydratase, type I" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 248 (92.4 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 74/227 (32%), Positives = 107/227 (47%)

Query:    21 KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPT 80
             KNP + CV      + ++        + GA   E+RLD L   + RE    L K    P 
Sbjct:     2 KNPPVCCV------ITRLPEAESLKKSEGAAFYELRLD-LLGESWREAAAMLDK----PF 50

Query:    81 LFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVI 140
             + T R   EGG + G E ER+ +L  A   GA  +D+E           R +   KC  +
Sbjct:    51 MATCRRSAEGGSFSGSEEERIGLLEKAAAAGAFMLDIEYSTPHLGEVLKRLRTQSKC--L 108

Query:   141 VSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVP---II 197
             VS HN+  TPS  DL  LV  +    ADI K  TTA  I D  ++  +    ++P   I+
Sbjct:   109 VSHHNFADTPSAGDLKTLVKDMLNYPADIYKVITTATSINDNIKLLNLI--KEIPDKKIV 166

Query:   198 GLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLY 244
                MG  G++SRILC   G   T+ +L +   SA GQ T+  ++++Y
Sbjct:   167 AFAMGNLGILSRILCPLAGSPFTYASLNDSNQSASGQMTLAQMIEIY 213

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

TIGR_CMR|CHY_0623 CHY_0623 "shikimate 5-dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 245 (91.3 bits), Expect = 2.8e-20, P = 2.8e-20
 Identities = 68/217 (31%), Positives = 111/217 (51%)

Query:   252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFS 309
             +TK+ GIIG P+ H+ SP ++NEAFK++  N +++ L V  + + +      + +F G +
Sbjct:     6 ETKLTGIIGYPLKHTLSPQMHNEAFKALNLNFLYLPLEVAEESLPQAIYGLKAFNFRGIN 65

Query:   310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRL 369
              TIP+KE      DEV T AK+IGAVN I+  +  G+L GYNTD  G + ++++      
Sbjct:    66 VTIPYKEKVFPFLDEVATEAKTIGAVNTIVHDR--GRLIGYNTDAPGFLLSLKEN----- 118

Query:   370 NVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGG--- 426
             +V       + GK  +++                   ++IANRT D+A+ELA+   G   
Sbjct:   119 DVE------VTGKKVLLLGAGGAARAVAYALLTAGAELIIANRTIDKAKELAKDFQGVGK 172

Query:   427 --HALSLADLENFNPEDGMILANTTSIGMQPKVDETP 461
                 L L D +  +     +  NT  +GM P  ++ P
Sbjct:   173 ISEILELGD-KPISLAPYHMAVNTLPLGMHPYENQMP 208

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

TIGR_CMR|SPO_3891 SPO_3891 "shikimate 5-dehydrogenase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 241 (89.9 bits), Expect = 7.7e-20, P = 7.7e-20
 Identities = 72/212 (33%), Positives = 105/212 (49%)

Query:   257 GIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPH 314
             G+IG P+ HSKSP L+    K+ G NG ++ + V   D+A+  +T     F G + TIPH
Sbjct:    10 GVIGHPISHSKSPRLHGHWLKTYGINGHYIPMDVAPQDLAQVVRTLPKAGFVGVNITIPH 69

Query:   315 KEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSG- 373
             KEA +   D++   A  IGAVN +I R+ DG++   NTD  G +  +  G  G    SG 
Sbjct:    70 KEAVMSVADQITDRATLIGAVNTLIFRE-DGRILADNTDGYGFMENLRAGAPGWDPKSGP 128

Query:   374 GVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGHALSLAD 433
              V     G    VI                   V++ NRT  RA +L +  G   +++AD
Sbjct:   129 AVVFGAGGAARAVISALAEAGVP---------EVIVTNRTRVRADKLKDDFG-QRVTVAD 178

Query:   434 -LENFNP-EDGMILANTTSIGMQPKVDETPIP 463
              ++  N  ED  ++ NTTS+GM  K  E  +P
Sbjct:   179 WVQAGNVIEDARLVVNTTSLGMIGK-PELRVP 209

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SQT8	DHQSD_ARATH	1, ., 1, ., 1, ., 2, 5	0.7377	0.9978	0.7694	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	4.2.1.10	0.946
3rd Layer	1.1.1	0.963
3rd Layer	4.2.1	0.963
4th Layer	1.1.1.25	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	DHQD4	dehydroquinate dehydratase/ shikimate dehydrogenase (EC-1.1.1.25) (518 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	DHQS6	SubName- Full=Putative uncharacterized protein; (375 aa)	•	•	•			•	•		0.971
	SK2	shikimate kinase (EC-2.7.1.71) (286 aa)			•			•	•		0.932
	SK3	shikimate kinase (EC-2.7.1.71) (294 aa)			•			•	•		0.931
	SKp	shikimate kinase (EC-2.7.1.71) (223 aa)			•			•			0.927
	SK1	shikimate kinase (EC-2.7.1.71) (286 aa)			•			•	•		0.920
	DHQD5	dehydroquinate dehydratase/ shikimate dehydrogenase (EC-1.1.1.25 4.2.1.10) (504 aa)			•			•		•	0.903
	DHQD3	dehydroquinate dehydratase/ shikimate dehydrogenase (EC-1.1.1.25 4.2.1.10) (518 aa)			•			•		•	0.902
	DHQD1	dehydroquinate dehydratase/ shikimate dehydrogenase (EC-1.1.1.25 4.2.1.10) (518 aa)			•			•		•	0.902
	DHQD2	dehydroquinate dehydratase/ shikimate dehydrogenase (EC-1.1.1.25) (521 aa)			•			•		•	0.901
	EPSPS	3-phosphoshikimate 1-carboxyvinyltransferase (EC-2.5.1.19) (519 aa)	•	•	•				•		0.751

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	465
PLN02520	529	PLN02520, PLN02520, bifunctional 3-dehydroquinate	0.0
pfam01487	222	pfam01487, DHquinase_I, Type I 3-dehydroquinase	3e-83
TIGR01093	228	TIGR01093, aroD, 3-dehydroquinate dehydratase, typ	3e-72
cd00502	225	cd00502, DHQase_I, Type I 3-dehydroquinase, (3-deh	2e-65
COG0169	283	COG0169, AroE, Shikimate 5-dehydrogenase [Amino ac	9e-61
PRK00258	278	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewe	7e-58
COG0710	231	COG0710, AroD, 3-dehydroquinate dehydratase [Amino	2e-52
PRK09310	477	PRK09310, aroDE, bifunctional 3-dehydroquinate deh	2e-46
TIGR00507	270	TIGR00507, aroE, shikimate 5-dehydrogenase	2e-43
PRK02412	253	PRK02412, aroD, 3-dehydroquinate dehydratase; Prov	1e-40
PRK12548	289	PRK12548, PRK12548, shikimate 5-dehydrogenase; Pro	9e-30
pfam08501	83	pfam08501, Shikimate_dh_N, Shikimate dehydrogenase	2e-28
PRK13575	238	PRK13575, PRK13575, 3-dehydroquinate dehydratase;	2e-25
TIGR01809	282	TIGR01809, Shik-DH-AROM, shikimate-5-dehydrogenase	2e-21
PRK12549	284	PRK12549, PRK12549, shikimate 5-dehydrogenase; Rev	2e-19
cd01065	155	cd01065, NAD_bind_Shikimate_DH, NAD(P) binding dom	4e-19
PRK12749	288	PRK12749, PRK12749, quinate/shikimate dehydrogenas	1e-17
pfam01488	133	pfam01488, Shikimate_DH, Shikimate / quinate 5-deh	5e-15
PRK12550	272	PRK12550, PRK12550, shikimate 5-dehydrogenase; Rev	9e-12
PRK00045	423	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed	5e-11
PRK14027	283	PRK14027, PRK14027, quinate/shikimate dehydrogenas	2e-10
cd05213	311	cd05213, NAD_bind_Glutamyl_tRNA_reduct, NADP-bindi	9e-10
COG0373	414	COG0373, HemA, Glutamyl-tRNA reductase [Coenzyme m	5e-09
TIGR01035	417	TIGR01035, hemA, glutamyl-tRNA reductase	2e-07
PRK13576	216	PRK13576, PRK13576, 3-dehydroquinate dehydratase;	1e-06
cd08944	246	cd08944, SDR_c12, classical (c) SDR, subgroup 12	5e-05
PRK07890	258	PRK07890, PRK07890, short chain dehydrogenase; Pro	1e-04
PRK08277	278	PRK08277, PRK08277, D-mannonate oxidoreductase; Pr	2e-04
cd08934	243	cd08934, CAD_SDR_c, clavulanic acid dehydrogenase	2e-04
PRK08642	253	PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein)	3e-04
PRK12823	260	PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1	3e-04
PRK08324	681	PRK08324, PRK08324, short chain dehydrogenase; Val	5e-04
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	6e-04
PRK05872	296	PRK05872, PRK05872, short chain dehydrogenase; Pro	8e-04
PRK07067	257	PRK07067, PRK07067, sorbitol dehydrogenase; Provis	0.001
pfam03807	93	pfam03807, F420_oxidored, NADP oxidoreductase coen	0.001
PRK07231	251	PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein)	0.002
smart01002	149	smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT	0.002
cd05305	359	cd05305, L-AlaDH, Alanine dehydrogenase NAD-bindin	0.002
PRK12384	259	PRK12384, PRK12384, sorbitol-6-phosphate dehydroge	0.003
cd05327	269	cd05327, retinol-DH_like_SDR_c_like, retinol dehyd	0.004
PRK07041	230	PRK07041, PRK07041, short chain dehydrogenase; Pro	0.004
cd00401	402	cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, N	0.004

>gnl|CDD|178135 PLN02520, PLN02520, bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

 Score =  889 bits (2299), Expect = 0.0
 Identities = 373/462 (80%), Positives = 410/462 (88%), Gaps = 1/462 (0%)

Query: 3   SPNLLVASGSKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKN 62
                +AS     SGG+R+NPTLICVPIM +SVDKM+++M KA   GADLVEIRLD LKN
Sbjct: 2   VSTASLASDDLQGSGGVRRNPTLICVPIMADSVDKMLIEMAKAKELGADLVEIRLDFLKN 61

Query: 63  FNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVA 122
           FNPRE++KTLIK+SP+PTL TYRP WEGGQY+GDEN+R D LRLAMELGADY+DVEL+VA
Sbjct: 62  FNPREDLKTLIKQSPLPTLVTYRPKWEGGQYEGDENKRQDALRLAMELGADYVDVELKVA 121

Query: 123 REFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDV 182
            EF +SI GKKPEKCKVIVSSHNY+ TPSVE+L NLVARIQA+GADIVK ATTALDITDV
Sbjct: 122 HEFINSISGKKPEKCKVIVSSHNYENTPSVEELGNLVARIQATGADIVKIATTALDITDV 181

Query: 183 ARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLD 242
           AR+FQITVHSQVP IGLVMGERGLISRILC KFGG+LTFGTLE G VSAPGQPTIKDLLD
Sbjct: 182 ARMFQITVHSQVPTIGLVMGERGLISRILCPKFGGYLTFGTLEAGKVSAPGQPTIKDLLD 241

Query: 243 LYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSS 302
           LYNFRQ+GPDTKV+GIIGKPVGHSKSPIL+NEAFKSVGFNGV+VHLLVDD+AKF QTYSS
Sbjct: 242 LYNFRQIGPDTKVYGIIGKPVGHSKSPILHNEAFKSVGFNGVYVHLLVDDLAKFLQTYSS 301

Query: 303 NDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE 362
            DFAGFSCTIPHKE A+KCCDEVD +AKSIGA+N IIRR SDGKL GYNTDY+GAISAIE
Sbjct: 302 PDFAGFSCTIPHKEDALKCCDEVDPIAKSIGAINTIIRRPSDGKLVGYNTDYIGAISAIE 361

Query: 363 DGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAE 422
           DGLR     S    S LAGKLFVVIGAGGAGKALAYGAK KGARVVIANRTY+RA+ELA+
Sbjct: 362 DGLRA-SGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELAD 420

Query: 423 TVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPK 464
            VGG AL+LADLENF+PE+GMILANTTS+GMQP VDETPI K
Sbjct: 421 AVGGQALTLADLENFHPEEGMILANTTSVGMQPNVDETPISK 462

Length = 529

>gnl|CDD|216526 pfam01487, DHquinase_I, Type I 3-dehydroquinase

 Score =  255 bits (654), Expect = 3e-83
 Identities = 87/225 (38%), Positives = 135/225 (60%), Gaps = 9/225 (4%)

Query: 27  CVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR---ENIKTLIKESPVPTLFT 83
           CVP+ G S+++ + ++ +    GAD VE+RLD L++ +     E +  L +++ +P +FT
Sbjct: 1   CVPVTGPSLEEALAELEEL-EEGADAVELRLDLLEDVDAEDVSEQLSALREKTGLPIIFT 59

Query: 84  YRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSS 143
            R   EGG++DG E E +++L+ A+ LG DYID+EL  A +   ++   K    K+I+S 
Sbjct: 60  VRTKSEGGRFDGSEEEYLELLKEALRLGPDYIDIELSSAPDELLAVIIAKKGGTKIILSY 119

Query: 144 HNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQ---VPIIGLV 200
           H+++ TPS EDL +L   +Q  GADIVK A  A  I DV R+ + T  ++    P+I + 
Sbjct: 120 HDFEGTPSWEDLLSLYEEMQKLGADIVKIAVMANSIEDVLRLLRFTSEAKELDKPLIAIS 179

Query: 201 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
           MGE G ISRIL   FG  LT+ +L     SAPGQ T+++L +   
Sbjct: 180 MGELGRISRILGPVFGSVLTYASLGK--ASAPGQITLEELREALE 222

Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate giving dehydroshikimate. Dehydroquinase functions in the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Type II 3-dehydroquinase catalyzes the trans-dehydration of 3-dehydroshikimate see pfam01220. Length = 222

>gnl|CDD|233268 TIGR01093, aroD, 3-dehydroquinate dehydratase, type I

 Score =  227 bits (581), Expect = 3e-72
 Identities = 84/231 (36%), Positives = 129/231 (55%), Gaps = 14/231 (6%)

Query: 25  LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-----SPVP 79
            I VP+    +++ +    K    GAD+VE+R+D LK+ +   ++  LI++        P
Sbjct: 1   KIFVPLTAPDLEEALATAEKIC-KGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKP 59

Query: 80  TLFTYRPIWEGGQYDGDENERVDVL-RLAMELGADYIDVELQVAREF-NDSIRGKKPEKC 137
            +FT R I EGG++ G+E E ++ L R A   G D++D+EL +  +   + I   K    
Sbjct: 60  LIFTIRTISEGGKFPGNEEEYLEELKRAADSPGPDFVDIELFLPDDAVKELINIAKKGGT 119

Query: 138 KVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQ---- 193
           K+I+S H++Q TPS E++   + +  + GADIVK A  A    DV  + +IT        
Sbjct: 120 KIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIAVMANSKEDVLTLLEITNKVDEHAD 179

Query: 194 VPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLY 244
           VP+I + MG+RG ISR+L A FG  LTFG+L     SAPGQ ++ DL +L 
Sbjct: 180 VPLITMSMGDRGKISRVLGAVFGSVLTFGSLGK--ASAPGQISVDDLRELL 228

This model detects 3-dehydroquinate dehydratase, type I, either as a monofunctional protein or as a domain of a larger, multifunctional protein. It is often found fused to shikimate 5-dehydrogenase (EC 1.1.1.25), and sometimes additional domains. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by the model TIGR01088 [Amino acid biosynthesis, Aromatic amino acid family]. Length = 228

>gnl|CDD|188633 cd00502, DHQase_I, Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase)

 Score =  209 bits (535), Expect = 2e-65
 Identities = 81/231 (35%), Positives = 127/231 (54%), Gaps = 15/231 (6%)

Query: 25  LICVPIMGESVDKMVVDMGKA--NASGADLVEIRLDGLKNFNPR---ENIKTLIKESPVP 79
            ICVP+ G     ++ +         GAD VE+R+D L++ +     E +  L + +P+P
Sbjct: 1   KICVPLTG---PDLLEEALSLLELLLGADAVELRVDLLEDPSIDDVAEQLSLLRELTPLP 57

Query: 80  TLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKV 139
            +FT R   EGG ++G E E +++L  A++LG DY+D+EL  A    + I  +K    K+
Sbjct: 58  IIFTVRTKSEGGNFEGSEEEYLELLEEALKLGPDYVDIELDSAL-LEELINSRKKGNTKI 116

Query: 140 IVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITV----HSQVP 195
           I S H++  TPS E+L + + ++ A GADIVK A  A  I D  R+ + T        +P
Sbjct: 117 IGSYHDFSGTPSDEELVSRLEKMAALGADIVKIAVMANSIEDNLRLLKFTRQVKNLYDIP 176

Query: 196 IIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246
           +I + MGE G +SRIL   FG  LT+ +L     SAPGQ ++++L    + 
Sbjct: 177 LIAINMGELGKLSRILSPVFGSPLTYASLPE--PSAPGQLSVEELKQALSL 225

Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase). Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism. Length = 225

>gnl|CDD|223247 COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

 Score =  199 bits (508), Expect = 9e-61
 Identities = 84/225 (37%), Positives = 129/225 (57%), Gaps = 20/225 (8%)

Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFA 306
           M   TK+FG+IG P+ HS SP ++N AF+++G + V++   V  +D+ +      +  F 
Sbjct: 2   MNGKTKLFGVIGNPISHSLSPRMHNAAFRALGLDYVYLAFEVPPEDLPEAVSGIRALGFR 61

Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR 366
           G + TIP KEAA+   DE+   A+ IGAVN ++R   DGKL GYNTD +G + A+++   
Sbjct: 62  GLNVTIPFKEAALPLLDELSPRARLIGAVNTLVRE-DDGKLRGYNTDGIGFLRALKE--- 117

Query: 367 GRLNVSGGVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTYDRARELAETVG 425
                  G+   + GK  +++GAGGA +A+A+  A+A   R+ + NRT +RA ELA+  G
Sbjct: 118 ------FGLPVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFG 171

Query: 426 -----GHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKV 465
                  A +LADLE     D  +L N T +GM     ++P+P  
Sbjct: 172 ELGAAVEAAALADLEGLEEAD--LLINATPVGMAGPEGDSPVPAE 214

Length = 283

>gnl|CDD|234703 PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed

 Score =  191 bits (489), Expect = 7e-58
 Identities = 75/215 (34%), Positives = 118/215 (54%), Gaps = 16/215 (7%)

Query: 253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSC 310
           T+++ +IG P+ HSKSP+++N AFK +G +GV++ +LV  +D+    + + +    G + 
Sbjct: 5   TRLYAVIGNPIAHSKSPLIHNAAFKQLGLDGVYLAILVPPEDLEDAVKGFFALGGRGANV 64

Query: 311 TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLN 370
           T+P KEAA    DE+   A+ IGAVN ++    DG+L G NTD +G + A+E+ L     
Sbjct: 65  TVPFKEAAFALADELSERARLIGAVNTLVLE--DGRLIGDNTDGIGFVRALEERL----- 117

Query: 371 VSGGVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTYDRARELAETVGGHAL 429
                   L GK  +++GAGGA +A+         A + I NRT +RA ELA+  G    
Sbjct: 118 -----GVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGK 172

Query: 430 SLADLENFNPEDGM-ILANTTSIGMQPKVDETPIP 463
           +  DLE         ++ N TS GM  ++   P+P
Sbjct: 173 AELDLELQEELADFDLIINATSAGMSGELPLPPLP 207

Length = 278

>gnl|CDD|223782 COG0710, AroD, 3-dehydroquinate dehydratase [Amino acid transport and metabolism]

 Score =  176 bits (447), Expect = 2e-52
 Identities = 75/223 (33%), Positives = 125/223 (56%), Gaps = 9/223 (4%)

Query: 24  TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKN-FNPRENIKTLIKESPV-PTL 81
             I VP++G  + ++     K+    AD+VE+R+D L++     E  K L ++ P  P +
Sbjct: 2   PKIIVPVVGLDIAELKEQAEKSKELDADIVELRVDLLESNVEVLEVAKALREKDPDKPLI 61

Query: 82  FTYRPIWEGGQYDGDENERVDVLR-LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVI 140
           FT+R + EGG++ G E E +++L+ LA   G DYID+EL    +    I  K  +K  VI
Sbjct: 62  FTFRTVKEGGEFPGSEEEYIELLKKLAELNGPDYIDIELSSPEDDVKEII-KFAKKHGVI 120

Query: 141 VSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV---PII 197
           VS H+++ TP +E++   + ++++ GADIVK A       DV  + + T   +    P+I
Sbjct: 121 VSYHDFEKTPPLEEIIERLDKMESLGADIVKIAVMPQSKEDVLDLLEATREFKEAEKPVI 180

Query: 198 GLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
            + MG+ G ISR+    FG  +T+ +L+    SAPGQ ++ +L
Sbjct: 181 TISMGKTGKISRVAGPVFGSPITYASLDK--PSAPGQISVDEL 221

Length = 231

>gnl|CDD|137204 PRK09310, aroDE, bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

 Score =  167 bits (424), Expect = 2e-46
 Identities = 118/397 (29%), Positives = 183/397 (46%), Gaps = 28/397 (7%)

Query: 51  DLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMEL 110
           D +E+R+D L + +  E +K LI+ +P+P L T++      Q    +     +  LA +L
Sbjct: 26  DCIELRVDLLLSLSDLE-LKKLIELAPIPIL-TWKKHESCSQAAWIDK----MQSLA-KL 78

Query: 111 GADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIV 170
             +Y+D++    +E    IR   P K K+I+S H    T   ED+  L   + AS AD  
Sbjct: 79  NPNYLDIDKDFPKEALIRIRKLHP-KIKIILSYH----TSEHEDIIQLYNEMLASAADYY 133

Query: 171 KFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVS 230
           K A ++   TD+  +             L MG  G  SRIL         +         
Sbjct: 134 KIAVSSSSSTDLLNIIHQKRSLPENTTVLCMGGMGRPSRILSPLLQNAFNYAAGIGAPPV 193

Query: 231 APGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV 290
           APGQ +++ LL  YN+  +   + ++G+IG PV  S S + +N  F  +  N  ++ L +
Sbjct: 194 APGQLSLEHLL-FYNYANLSAQSPIYGLIGDPVDRSISHLSHNPLFSQLSLNCPYIKLPL 252

Query: 291 D--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLF 348
              ++ KFF T     F G S T+P K A +   D++D   K  G+ N ++ R   GK+ 
Sbjct: 253 TPQELPKFFSTIRDLPFLGLSVTMPLKTAVLDFLDKLDPSVKLCGSCNTLVFRN--GKIE 310

Query: 349 GYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV 408
           GYNTD  G  S ++     + N+       L  +   ++GAGGA KA+A      GA ++
Sbjct: 311 GYNTDGEGLFSLLK-----QKNIP------LNNQHVAIVGAGGAAKAIATTLARAGAELL 359

Query: 409 IANRTYDRARELAETVGGHALSLADLENFNPEDGMIL 445
           I NRT   A  LA    G A  L  L   +  D +I 
Sbjct: 360 IFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIIN 396

Length = 477

>gnl|CDD|161904 TIGR00507, aroE, shikimate 5-dehydrogenase

 Score =  153 bits (389), Expect = 2e-43
 Identities = 81/217 (37%), Positives = 115/217 (52%), Gaps = 22/217 (10%)

Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCT 311
           K++G+IG P+ HSKSP+++N  FK +G  G ++  LV  DD+      + +  F G + T
Sbjct: 1   KLYGVIGNPIAHSKSPLIHNAFFKQLGLEGPYIAFLVPPDDLEDALSGFFALGFKGANVT 60

Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV 371
            P KE A +  DE+D  AK  GAVN ++    DGKL GYNTD +G +S +E  +  R N 
Sbjct: 61  SPFKERAFQFLDEIDGRAKLAGAVNTLVLE--DGKLVGYNTDGIGLVSDLEQLIPLRPN- 117

Query: 372 SGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAE----TVGGH 427
                     +  ++IGAGGA KA+A         V+IANRT  +A ELAE         
Sbjct: 118 ----------QNVLIIGAGGAAKAVALELLKADCNVIIANRTVSKAEELAERFQRYGEIQ 167

Query: 428 ALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPK 464
           A S+ +L         ++ N TS GM   +DE P+P 
Sbjct: 168 AFSMDELP---LHRVDLIINATSAGMSGNIDEPPVPA 201

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain [Amino acid biosynthesis, Aromatic amino acid family]. Length = 270

>gnl|CDD|235036 PRK02412, aroD, 3-dehydroquinate dehydratase; Provisional

 Score =  145 bits (369), Expect = 1e-40
 Identities = 67/229 (29%), Positives = 119/229 (51%), Gaps = 14/229 (6%)

Query: 24  TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-----SPV 78
             I VPIMG+++++++ +    +   AD++E R D L+  +  E++           +  
Sbjct: 16  PKIIVPIMGKTLEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGK 75

Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELGA-DYIDVELQVARE-FNDSIRGKKPEK 136
           P LFT+R   EGG+    + E + +++  ++ G  DYIDVEL   ++   + +       
Sbjct: 76  PLLFTFRTAKEGGEIALSDEEYLALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEHG 135

Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVH----- 191
            KV++S H+++ TP  E++   + ++++ GADIVK A       DV  +   T       
Sbjct: 136 VKVVLSYHDFEKTPPKEEIVERLRKMESLGADIVKIAVMPQSEQDVLTLLNATREMKELY 195

Query: 192 SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
           +  P+I + MG+ G ISR+    FG   TF +L+    SAPGQ +++DL
Sbjct: 196 ADQPLITMSMGKLGRISRLAGEVFGSSWTFASLDK--ASAPGQISVEDL 242

Length = 253

>gnl|CDD|183585 PRK12548, PRK12548, shikimate 5-dehydrogenase; Provisional

 Score =  117 bits (294), Expect = 9e-30
 Identities = 75/225 (33%), Positives = 108/225 (48%), Gaps = 28/225 (12%)

Query: 253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFV--HLLVDDIAKFFQTYSSNDFAGFSC 310
           T + G+IG PVGHS SP +YN +F+  G +  ++   + VD +    +   + +  G + 
Sbjct: 9   TGLLGLIGSPVGHSGSPAMYNYSFQKAGLDYAYLAFDIPVDKVPDAIKAIKTFNMRGANV 68

Query: 311 TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLN 370
           T+P K  A K  DE+   A+ IGAVN I+    DGKL G+ TD +G +  + +       
Sbjct: 69  TMPCKSEAAKYMDELSPAARIIGAVNTIV--NDDGKLTGHITDGLGFVRNLRE------- 119

Query: 371 VSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANRT---YDRARELAETVGG 426
              GV   + GK   VIGAGGA  A+       GA+ + I N     Y+RA + AE +  
Sbjct: 120 --HGVD--VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQ 175

Query: 427 -------HALSLADLENFNPE--DGMILANTTSIGMQPKVDETPI 462
                  +   L D E    E     IL N T +GM+P   ET I
Sbjct: 176 EVPECIVNVYDLNDTEKLKAEIASSDILVNATLVGMKPNDGETNI 220

Length = 289

>gnl|CDD|149523 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase substrate binding domain

 Score =  107 bits (269), Expect = 2e-28
 Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 2/83 (2%)

Query: 258 IIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHK 315
           +IG P+ HS SP+++N AFK++G NGV+V   V  D++ +F +   +  F G + TIPHK
Sbjct: 1   LIGNPISHSLSPLIHNAAFKALGLNGVYVAFEVPPDNLPEFVEGLRALGFRGLNVTIPHK 60

Query: 316 EAAVKCCDEVDTVAKSIGAVNCI 338
           EAA+   DE+   AK IGAVN I
Sbjct: 61  EAAIPLLDELSPEAKRIGAVNTI 83

This domain is the substrate binding domain of shikimate dehydrogenase. Length = 83

>gnl|CDD|184156 PRK13575, PRK13575, 3-dehydroquinate dehydratase; Provisional

 Score =  103 bits (259), Expect = 2e-25
 Identities = 60/228 (26%), Positives = 103/228 (45%), Gaps = 18/228 (7%)

Query: 33  ESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR---ENIKTL-IKESPVPTLFTYRPIW 88
            S+++ ++          D++E+R+D  +N       E I  L + +     L TYR   
Sbjct: 14  LSIEETLIQKINHRIDAIDIIELRIDQWENVTVDQLAEMITKLKVLQDSFKLLVTYRTKL 73

Query: 89  EGGQYDGDENERVDVLR-LAMELGADYIDVELQVAREFN---DSIRGKKPEKCKVIVSSH 144
           +GG      +  +++L  LA   G D ID+E Q   +       I   +    +V++S H
Sbjct: 74  QGGYGQFTNDLYLNLLSDLANINGIDMIDIEWQADIDIEKHQRLITHLQQYNKEVVISHH 133

Query: 145 NYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQI------TVHSQVPIIG 198
           N++ TP +++L  +  ++Q    + VK A    +  DV  + Q       T+  +V  +G
Sbjct: 134 NFESTPPLDELKFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKV--VG 191

Query: 199 LVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246
           + M + GLISR     FGG L++G +  G   APGQ  + DL      
Sbjct: 192 ISMSKLGLISRTAQGVFGGALSYGCI--GEPQAPGQIHVTDLKAQVTL 237

Length = 238

>gnl|CDD|233580 TIGR01809, Shik-DH-AROM, shikimate-5-dehydrogenase, fungal AROM-type

 Score = 93.4 bits (232), Expect = 2e-21
 Identities = 55/172 (31%), Positives = 79/172 (45%), Gaps = 13/172 (7%)

Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSN--DFAGFSCT 311
           K   IIGKP+ HS+SP L+N  ++ +G              +  +  S     F G S T
Sbjct: 6   KKAFIIGKPIAHSRSPHLHNAGYEILGLPDKTYEFETCSAEELKEVLSGFGPQFGGASVT 65

Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV 371
           IP K A ++  DE    A  IG+VN ++R Q +G   G NTD+ G   A+          
Sbjct: 66  IPLKFAILRFADEHTDRASLIGSVNTLLRTQ-NGIWKGDNTDWDGIAGAL---------A 115

Query: 372 SGGVSSALAGKLFVVIGAGGAGKALAYGAKAKG-ARVVIANRTYDRARELAE 422
           + G    LAG   +VIGAGG  +A  Y   + G   + + NR  D+   L +
Sbjct: 116 NIGKFEPLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVD 167

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway [Amino acid biosynthesis, Aromatic amino acid family]. Length = 282

>gnl|CDD|183586 PRK12549, PRK12549, shikimate 5-dehydrogenase; Reviewed

 Score = 88.0 bits (219), Expect = 2e-19
 Identities = 62/225 (27%), Positives = 98/225 (43%), Gaps = 38/225 (16%)

Query: 257 GIIGKPVGHSKSPILYNEAFKSVGFNGVF-------VHLLVDDIAKFFQTYSSNDFAGFS 309
           G+IG  +  S SP ++     + G   V+       + L  D + +         FAG +
Sbjct: 9   GLIGAGIQASLSPAMHEAEGDAQGLRYVYRLIDLDALGLTADALPELLDAAERMGFAGLN 68

Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGL---- 365
            T P K+A +   DE+   A+++GAVN ++ R  DG+  G+NTD+ G   +   GL    
Sbjct: 69  ITHPCKQAVIPHLDELSDDARALGAVNTVVFR--DGRRIGHNTDWSGFAESFRRGLPDAS 126

Query: 366 RGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETV 424
             R+               V +GAGGAG A+A+     G  R+ I +    RA  LA+ +
Sbjct: 127 LERV---------------VQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADEL 171

Query: 425 GGH-----ALSLADLENFNPE-DGMILANTTSIGMQPKVDETPIP 463
                   A + +DL       DG++  + T  GM  K    P+P
Sbjct: 172 NARFPAARATAGSDLAAALAAADGLV--HATPTGM-AKHPGLPLP 213

Length = 284

>gnl|CDD|133443 cd01065, NAD_bind_Shikimate_DH, NAD(P) binding domain of Shikimate dehydrogenase

 Score = 83.9 bits (208), Expect = 4e-19
 Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 16/116 (13%)

Query: 352 TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIA 410
           TD +G + A+E+               L GK  +++GAGGA +A+AY     GA ++VI 
Sbjct: 1   TDGLGFVRALEEAGIE-----------LKGKKVLILGAGGAARAVAYALAELGAAKIVIV 49

Query: 411 NRTYDRARELAETVG--GHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPK 464
           NRT ++A+ LAE  G  G A++  DLE     +  ++ NTT +GM+P  DE P+P 
Sbjct: 50  NRTLEKAKALAERFGELGIAIAYLDLEEL-LAEADLIINTTPVGMKP-GDELPLPP 103

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DHs, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 155

>gnl|CDD|183721 PRK12749, PRK12749, quinate/shikimate dehydrogenase; Reviewed

 Score = 83.1 bits (205), Expect = 1e-17
 Identities = 65/223 (29%), Positives = 107/223 (47%), Gaps = 27/223 (12%)

Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSCT 311
           ++ G++  P+ HS SP + N+A +  G    ++   VD+       +   +    G   +
Sbjct: 8   ELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVS 67

Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV 371
           +P+K+ A +  DE+   AK +GA+N I+    DG L GYNTD  G I AI++        
Sbjct: 68  MPNKQLACEYVDELTPAAKLVGAINTIV--NDDGYLRGYNTDGTGHIRAIKE-------- 117

Query: 372 SGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV-IANRT---YDRARELAETVGGH 427
           SG     + GK  V++GAGGA  A+      +G + + + NR    +D+A   A+ V  +
Sbjct: 118 SG---FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNEN 174

Query: 428 A------LSLADLENFNP--EDGMILANTTSIGMQPKVDETPI 462
                    LAD + F        IL N T +GM+P  +E+ +
Sbjct: 175 TDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLV 217

Length = 288

>gnl|CDD|216527 pfam01488, Shikimate_DH, Shikimate / quinate 5-dehydrogenase

 Score = 71.6 bits (176), Expect = 5e-15
 Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 6/81 (7%)

Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANRTYDRARELAETVGG--HALSLADLE 435
           L GK  ++IGAG   +  A    +KGA+ + IANRT ++A+ELAE       AL L +LE
Sbjct: 10  LKGKKVLLIGAGEMARLAAKHLLSKGAKKITIANRTLEKAKELAEEFPVGGEALPLDELE 69

Query: 436 NFNPE-DGMILANTTSIGMQP 455
               E D  I+ + TS     
Sbjct: 70  ELLAEAD--IVISATSAPTPI 88

This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyzes the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyzes the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate. Length = 133

>gnl|CDD|183587 PRK12550, PRK12550, shikimate 5-dehydrogenase; Reviewed

 Score = 65.0 bits (159), Expect = 9e-12
 Identities = 49/149 (32%), Positives = 66/149 (44%), Gaps = 20/149 (13%)

Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR 366
           G + ++P KEA +   DE+D  A++I +VN I+   +DG L  YNTDY+    AI   L 
Sbjct: 62  GCAVSMPFKEAVIPLVDELDPSAQAIESVNTIV--NTDGHLKAYNTDYI----AIAKLLA 115

Query: 367 GRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKG-ARVVIANRTYDRARELAETVG 425
                S  V   L      + G+GG  KA+A   +  G     I  R     + LAE  G
Sbjct: 116 -----SYQVPPDLV---VALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYG 167

Query: 426 GHALSLADLENFNPEDGMILANTTSIGMQ 454
                  DL     +   IL N T IGM 
Sbjct: 168 YE--WRPDLGGIEAD---ILVNVTPIGMA 191

Length = 272

>gnl|CDD|234592 PRK00045, hemA, glutamyl-tRNA reductase; Reviewed

 Score = 64.0 bits (157), Expect = 5e-11
 Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 14/78 (17%)

Query: 372 SGGVSSA-----LAGKLF--------VVIGAGGAGKALAYGAKAKGAR-VVIANRTYDRA 417
           +G VS A     LA ++F        +VIGAG  G+ +A     KG R + +ANRT +RA
Sbjct: 160 AGAVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERA 219

Query: 418 RELAETVGGHALSLADLE 435
            ELAE  GG A+ L +L 
Sbjct: 220 EELAEEFGGEAIPLDELP 237

Length = 423

>gnl|CDD|172521 PRK14027, PRK14027, quinate/shikimate dehydrogenase; Provisional

 Score = 61.6 bits (149), Expect = 2e-10
 Identities = 59/218 (27%), Positives = 96/218 (44%), Gaps = 30/218 (13%)

Query: 252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVF--VHLLVD-----DIAKFFQTYSSND 304
           D+ + G+IG+ +  S++P ++     + G   V+  +  L       D+           
Sbjct: 3   DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLG 62

Query: 305 FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG 364
           F G + T P+K+A +   DEV   A  +GAVN ++   + G   G+NTD  G    +E+G
Sbjct: 63  FNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVV-IDATGHTTGHNTDVSGFGRGMEEG 121

Query: 365 LRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAE- 422
           L      S            V +GAGG G A+AY     G  ++ +A+    RA+ LA+ 
Sbjct: 122 LPNAKLDS-----------VVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADV 170

Query: 423 ---TVGGHALSLADL----ENFNPEDGMILANTTSIGM 453
               VG  A+   D     +     DG++  N T +GM
Sbjct: 171 INNAVGREAVVGVDARGIEDVIAAADGVV--NATPMGM 206

Length = 283

>gnl|CDD|133452 cd05213, NAD_bind_Glutamyl_tRNA_reduct, NADP-binding domain of glutamyl-tRNA reductase

 Score = 59.6 bits (145), Expect = 9e-10
 Identities = 28/58 (48%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 379 LAGKLFVVIGAGGAG-KALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLE 435
           L GK  +VIGAG  G  A  + A    A + IANRTY+RA ELA+ +GG+A+ L +L 
Sbjct: 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELL 233

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 311

>gnl|CDD|223450 COG0373, HemA, Glutamyl-tRNA reductase [Coenzyme metabolism]

 Score = 57.6 bits (140), Expect = 5e-09
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 379 LAGKLFVVIGAGGAG-KALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENF 437
           L  K  +VIGAG  G     + A+    ++ IANRT +RA ELA+ +G  A++L +L   
Sbjct: 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEA 235

Query: 438 -NPEDGMILA 446
               D +I +
Sbjct: 236 LAEADVVISS 245

Length = 414

>gnl|CDD|233242 TIGR01035, hemA, glutamyl-tRNA reductase

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 29/73 (39%), Positives = 48/73 (65%), Gaps = 1/73 (1%)

Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGHALSLADLENF 437
           L GK  ++IGAG  G+ +A     KG  +++IANRTY+RA +LA+ +GG A+   DLE +
Sbjct: 178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEY 237

Query: 438 NPEDGMILANTTS 450
             E  +++++T +
Sbjct: 238 LAEADIVISSTGA 250

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 417

>gnl|CDD|237433 PRK13576, PRK13576, 3-dehydroquinate dehydratase; Provisional

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 11/133 (8%)

Query: 46  NASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR 105
           N   ADL+E+RLD LK+      I+ L K      + T R   EGG  + D+  ++ +L+
Sbjct: 22  NFLDADLIELRLDYLKDR-EVSVIEFLDKYKD-KLIVTLRDKAEGGINELDDELKISLLK 79

Query: 106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQAS 165
              +    Y DVE    +++N     K       IVS H + Y P+ E++  +V++    
Sbjct: 80  ELYDKQFLY-DVEASFLQKYNVPYDNK-------IVSIHYFDYLPTSEEVKEIVSKFYEK 131

Query: 166 GADIVKFATTALD 178
            A  VK A   L 
Sbjct: 132 -AFSVKIAVLGLK 143

Length = 216

>gnl|CDD|187648 cd08944, SDR_c12, classical (c) SDR, subgroup 12

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
           L GK+ +V GAG G G A A     +GARVV+A+     A+ +   + G AL+L 
Sbjct: 1   LEGKVAIVTGAGAGIGAACAARLAREGARVVVADIDGGAAQAVVAQIAGGALALR 55

These are classical SDRs, with the canonical active site tetrad and glycine-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 246

>gnl|CDD|181159 PRK07890, PRK07890, short chain dehydrogenase; Provisional

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSLA 432
           L GK+ VV G G G G+ LA  A   GA VV+A RT +R  E+A  +   G  AL++ 
Sbjct: 3   LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVP 60

Length = 258

>gnl|CDD|236216 PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 379 LAGKLFVVIGAGGA-GKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSLA 432
           L GK+ V+ G GG  G A+A      GA+V I +R  ++A  +   +   GG AL++ 
Sbjct: 8   LKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVK 65

Length = 278

>gnl|CDD|187639 cd08934, CAD_SDR_c, clavulanic acid dehydrogenase (CAD), classical (c) SDR

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 27/57 (47%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELA---ETVGGHALSL 431
           L GK+ +V GA  G G+A A    A+GA V IA R  DR   LA   E  GG AL L
Sbjct: 1   LQGKVALVTGASSGIGEATARALAAEGAAVAIAARRVDRLEALADELEAEGGKALVL 57

CAD catalyzes the NADP-dependent reduction of clavulanate-9-aldehyde to clavulanic acid, a beta-lactamase inhibitor. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243

>gnl|CDD|181517 PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 382 KLFVVIGAG-GAGKALAYGAKAKGARVVIA-NRTYDRARELAETVGGHALSL-ADLENFN 438
           +  +V G   G G A+A     +GARVV+  +++ D A  LA+ +G  A++L AD+ +  
Sbjct: 6   QTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADELGDRAIALQADVTDRE 65

Query: 439 PEDGMILANTTSIG 452
               M    T   G
Sbjct: 66  QVQAMFATATEHFG 79

Length = 253

>gnl|CDD|183772 PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 6/63 (9%)

Query: 380 AGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT---YDRARELAETVGGHALSL-ADL 434
           AGK+ VV GA  G G+ +A  A A+GARVV+ +R+   ++ A EL    GG AL+L ADL
Sbjct: 7   AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAA-GGEALALTADL 65

Query: 435 ENF 437
           E +
Sbjct: 66  ETY 68

Length = 260

>gnl|CDD|236241 PRK08324, PRK08324, short chain dehydrogenase; Validated

 Score = 42.1 bits (100), Expect = 5e-04
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 379 LAGKLFVVIGAGGA-GKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
           LAGK+ +V GA G  GKA A    A+GA VV+A+   + A   A  +GG   +L 
Sbjct: 420 LAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALG 474

Length = 681

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA 428
            G   +V+GAGG G   A  AKA GARV++ +R+ ++  ELA+ +G   
Sbjct: 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEK-LELAKELGADH 181

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|235633 PRK05872, PRK05872, short chain dehydrogenase; Provisional

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 373 GGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA 428
           G   ++LAGK+ VV GA  G G  LA    A+GA++ + +        LA  +GG  
Sbjct: 1   GPPMTSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDD 57

Length = 296

>gnl|CDD|235925 PRK07067, PRK07067, sorbitol dehydrogenase; Provisional

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 379 LAGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
           L GK+ ++ G A G G+A+A    A+GARVVIA+    RAR  A  +G  A++++
Sbjct: 4   LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVS 58

Length = 257

>gnl|CDD|202773 pfam03807, F420_oxidored, NADP oxidoreductase coenzyme F420-dependent

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 22/41 (53%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 386 VIGAGGAGKALAYGAKAKGARVVIAN-RTYDRARELAETVG 425
           +IGAG  G+ALA G  A G  VVIAN R  ++A  LAE +G
Sbjct: 4   IIGAGNMGEALARGLAAAGHEVVIANSRNPEKAAALAEELG 44

Length = 93

>gnl|CDD|235975 PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 39.8 bits (94), Expect = 0.002
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG--GHALSLA 432
           L GK+ +V GA  G G+ +A    A+GARVV+ +R  + A  +A  +   G A+++A
Sbjct: 3   LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVA 59

Length = 251

>gnl|CDD|214966 smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal domain

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 364 GLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET 423
           G  G L    G       K  VVIGAG  G   A  AK  GA V + +    R R+L   
Sbjct: 6   GGFGML--LTGAGGVPPAK-VVVIGAGVVGLGAAATAKGLGAEVTVLDVRPARLRQLESL 62

Query: 424 VGGHALSLA 432
           +G    +L 
Sbjct: 63  LGARFTTLY 71

Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Length = 149

>gnl|CDD|240630 cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains

 Score = 39.7 bits (94), Expect = 0.002
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 373 GGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH 427
           GGV      K+ V++GAG  G+  A  A   GA V + +   +R R L +  GG 
Sbjct: 161 GGVPGVPPAKV-VILGAGVVGENAARVALGLGAEVTVLDINLERLRYLDDIFGGR 214

Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyruvate to L-alanine via reductive amination. Like formate dehydrogenase and related enzymes, L-AlaDH is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. Ligand binding and active site residues are found in the cleft between the subdomains. L-AlaDH is typically hexameric and is critical in carbon and nitrogen metabolism in micro-organisms. Length = 359

>gnl|CDD|183489 PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 381 GKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV 424
            ++ VVIG G   G  L +G   +G RV +A+   ++A  +A+ +
Sbjct: 2   NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEI 46

Length = 259

>gnl|CDD|212492 cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs

 Score = 38.7 bits (91), Expect = 0.004
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV----GGHALSL--AD 433
           GK+ V+ GA  G GK  A     +GA V+IA R  ++  E A  +    G   + +   D
Sbjct: 1   GKVVVITGANSGIGKETARELAKRGAHVIIACRNEEKGEEAAAEIKKETGNAKVEVIQLD 60

Query: 434 LENFN 438
           L +  
Sbjct: 61  LSSLA 65

Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 269

>gnl|CDD|235914 PRK07041, PRK07041, short chain dehydrogenase; Provisional

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 22/44 (50%), Positives = 27/44 (61%)

Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA 428
           VV G+ G G ALA    A+GARV IA+R+ DR    A  +GG A
Sbjct: 2   VVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGGGA 45

Length = 230

>gnl|CDD|240619 cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, NAD-binding and catalytic domains

 Score = 39.0 bits (92), Expect = 0.004
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVI 409
           +AGK+ VV G G  GK  A  A+  GARV++
Sbjct: 193 IAGKVVVVAGYGWVGKGCAMRARGLGARVIV 223

S-adenosyl-L-homocysteine hydrolase (SAHH, AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homotetramers, with each monomer binding one molecule of NAD+. Length = 402

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	465
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	100.0
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	100.0
PRK02412	253	aroD 3-dehydroquinate dehydratase; Provisional	100.0
COG0710	231	AroD 3-dehydroquinate dehydratase [Amino acid tran	100.0
TIGR01093	228	aroD 3-dehydroquinate dehydratase, type I. Type II	100.0
PF01487	224	DHquinase_I: Type I 3-dehydroquinase; InterPro: IP	100.0
PRK13575	238	3-dehydroquinate dehydratase; Provisional	100.0
cd00502	225	DHQase_I Type I 3-dehydroquinase, (3-dehydroquinat	100.0
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	100.0
PRK13576	216	3-dehydroquinate dehydratase; Provisional	100.0
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	100.0
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	100.0
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	100.0
PRK12548	289	shikimate 5-dehydrogenase; Provisional	100.0
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	100.0
PRK01261	229	aroD 3-dehydroquinate dehydratase; Provisional	100.0
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	100.0
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	100.0
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	100.0
KOG0692	595	consensus Pentafunctional AROM protein [Amino acid	99.95
PF08501	83	Shikimate_dh_N: Shikimate dehydrogenase substrate	99.93
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.82
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	99.43
PRK13940	414	glutamyl-tRNA reductase; Provisional	99.12
PRK08291	330	ectoine utilization protein EutC; Validated	99.1
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	99.07
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	99.06
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	99.02
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.96
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.65
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.65
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.63
PLN00203	519	glutamyl-tRNA reductase	98.58
COG0300	265	DltE Short-chain dehydrogenases of various substra	98.5
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	98.5
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	98.36
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.32
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.28
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	98.15
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	98.14
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.12
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	98.11
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.06
PRK06141	314	ornithine cyclodeaminase; Validated	98.04
PRK07340	304	ornithine cyclodeaminase; Validated	98.0
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.0
PRK08618	325	ornithine cyclodeaminase; Validated	97.97
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.95
KOG1208	314	consensus Dehydrogenases with different specificit	97.93
KOG0725	270	consensus Reductases with broad range of substrate	97.88
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.87
PRK05872	296	short chain dehydrogenase; Provisional	97.86
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	97.86
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	97.85
PRK05854	313	short chain dehydrogenase; Provisional	97.85
PRK08339	263	short chain dehydrogenase; Provisional	97.83
PRK08862	227	short chain dehydrogenase; Provisional	97.78
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	97.78
PRK07523	255	gluconate 5-dehydrogenase; Provisional	97.77
PRK06139	330	short chain dehydrogenase; Provisional	97.74
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	97.73
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	97.73
PRK05876	275	short chain dehydrogenase; Provisional	97.71
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	97.69
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.69
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	97.67
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	97.66
PRK08265	261	short chain dehydrogenase; Provisional	97.66
PRK05867	253	short chain dehydrogenase; Provisional	97.66
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	97.65
PRK07062	265	short chain dehydrogenase; Provisional	97.65
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	97.64
PRK06196	315	oxidoreductase; Provisional	97.64
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.64
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.64
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.63
PRK07063	260	short chain dehydrogenase; Provisional	97.62
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	97.61
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	97.61
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.6
PRK07825	273	short chain dehydrogenase; Provisional	97.59
PRK06720	169	hypothetical protein; Provisional	97.59
PRK05717	255	oxidoreductase; Validated	97.59
PRK05866	293	short chain dehydrogenase; Provisional	97.58
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.57
PRK14982	340	acyl-ACP reductase; Provisional	97.57
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.56
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.56
PRK07060	245	short chain dehydrogenase; Provisional	97.55
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.55
PRK06194	287	hypothetical protein; Provisional	97.55
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	97.54
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.54
PRK08589	272	short chain dehydrogenase; Validated	97.54
PRK06500	249	short chain dehydrogenase; Provisional	97.53
PRK08277	278	D-mannonate oxidoreductase; Provisional	97.52
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	97.52
PRK07109	334	short chain dehydrogenase; Provisional	97.52
PRK06057	255	short chain dehydrogenase; Provisional	97.51
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	97.51
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.5
PRK07478	254	short chain dehydrogenase; Provisional	97.5
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	97.5
PRK06949	258	short chain dehydrogenase; Provisional	97.5
PRK07067	257	sorbitol dehydrogenase; Provisional	97.49
PRK06197	306	short chain dehydrogenase; Provisional	97.49
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.49
PLN02253	280	xanthoxin dehydrogenase	97.49
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	97.49
PRK08085	254	gluconate 5-dehydrogenase; Provisional	97.49
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	97.48
PRK06182	273	short chain dehydrogenase; Validated	97.48
PRK12367	245	short chain dehydrogenase; Provisional	97.47
PRK07453	322	protochlorophyllide oxidoreductase; Validated	97.47
PRK07791	286	short chain dehydrogenase; Provisional	97.44
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	97.44
PLN02780	320	ketoreductase/ oxidoreductase	97.43
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.43
PRK09242	257	tropinone reductase; Provisional	97.42
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	97.41
PRK06180	277	short chain dehydrogenase; Provisional	97.41
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.41
PRK12742	237	oxidoreductase; Provisional	97.39
PRK05993	277	short chain dehydrogenase; Provisional	97.39
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	97.39
PLN03209	576	translocon at the inner envelope of chloroplast su	97.38
PRK07774	250	short chain dehydrogenase; Provisional	97.38
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	97.37
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	97.37
PRK06484	520	short chain dehydrogenase; Validated	97.36
PRK06125	259	short chain dehydrogenase; Provisional	97.36
PRK08251	248	short chain dehydrogenase; Provisional	97.36
PRK08303	305	short chain dehydrogenase; Provisional	97.36
PRK06940	275	short chain dehydrogenase; Provisional	97.36
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.36
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	97.36
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.35
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	97.34
PRK06484	520	short chain dehydrogenase; Validated	97.34
PRK09072	263	short chain dehydrogenase; Provisional	97.33
PRK07890	258	short chain dehydrogenase; Provisional	97.32
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	97.32
PRK07097	265	gluconate 5-dehydrogenase; Provisional	97.31
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	97.31
PRK06138	252	short chain dehydrogenase; Provisional	97.31
PRK07814	263	short chain dehydrogenase; Provisional	97.31
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	97.31
PRK08340	259	glucose-1-dehydrogenase; Provisional	97.3
PRK07831	262	short chain dehydrogenase; Provisional	97.3
PRK07035	252	short chain dehydrogenase; Provisional	97.3
PRK09186	256	flagellin modification protein A; Provisional	97.3
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	97.28
PRK06114	254	short chain dehydrogenase; Provisional	97.28
PRK08643	256	acetoin reductase; Validated	97.28
PRK07024	257	short chain dehydrogenase; Provisional	97.27
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.27
PRK08213	259	gluconate 5-dehydrogenase; Provisional	97.26
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.26
PRK07326	237	short chain dehydrogenase; Provisional	97.24
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.24
PRK07677	252	short chain dehydrogenase; Provisional	97.24
PRK08267	260	short chain dehydrogenase; Provisional	97.23
PRK07454	241	short chain dehydrogenase; Provisional	97.23
PRK06124	256	gluconate 5-dehydrogenase; Provisional	97.22
PRK09291	257	short chain dehydrogenase; Provisional	97.22
PRK06483	236	dihydromonapterin reductase; Provisional	97.22
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.2
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.2
PRK07576	264	short chain dehydrogenase; Provisional	97.19
PRK06398	258	aldose dehydrogenase; Validated	97.18
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	97.18
PRK08628	258	short chain dehydrogenase; Provisional	97.17
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.17
PRK12939	250	short chain dehydrogenase; Provisional	97.17
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	97.17
PRK12829	264	short chain dehydrogenase; Provisional	97.15
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	97.15
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.14
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	97.14
PRK06841	255	short chain dehydrogenase; Provisional	97.14
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.14
PTZ00075	476	Adenosylhomocysteinase; Provisional	97.13
PRK06914	280	short chain dehydrogenase; Provisional	97.13
PRK06172	253	short chain dehydrogenase; Provisional	97.12
PRK10538	248	malonic semialdehyde reductase; Provisional	97.12
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.12
PRK05855	582	short chain dehydrogenase; Validated	97.12
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	97.12
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.12
PRK08263	275	short chain dehydrogenase; Provisional	97.11
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.11
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	97.11
PRK06482	276	short chain dehydrogenase; Provisional	97.1
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.1
PRK05693	274	short chain dehydrogenase; Provisional	97.09
PRK12828	239	short chain dehydrogenase; Provisional	97.09
PRK05875	276	short chain dehydrogenase; Provisional	97.09
PRK07832	272	short chain dehydrogenase; Provisional	97.09
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	97.08
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.08
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	97.08
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.07
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	97.07
PRK05599	246	hypothetical protein; Provisional	97.07
PLN02928	347	oxidoreductase family protein	97.06
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	97.04
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	97.04
PRK06179	270	short chain dehydrogenase; Provisional	97.03
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.03
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.03
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.02
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	97.02
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.02
PRK05650	270	short chain dehydrogenase; Provisional	97.02
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.01
PRK05884	223	short chain dehydrogenase; Provisional	97.01
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.01
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.01
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.0
PRK05479	330	ketol-acid reductoisomerase; Provisional	97.0
PRK08936	261	glucose-1-dehydrogenase; Provisional	96.99
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	96.99
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.99
PRK08324	681	short chain dehydrogenase; Validated	96.99
PRK08278	273	short chain dehydrogenase; Provisional	96.99
PLN02494	477	adenosylhomocysteinase	96.98
PRK07856	252	short chain dehydrogenase; Provisional	96.98
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.97
PRK06046	326	alanine dehydrogenase; Validated	96.97
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	96.96
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.96
PRK07201	657	short chain dehydrogenase; Provisional	96.96
PRK12747	252	short chain dehydrogenase; Provisional	96.95
PRK06523	260	short chain dehydrogenase; Provisional	96.95
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	96.95
PRK07074	257	short chain dehydrogenase; Provisional	96.94
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	96.93
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.92
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.91
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	96.89
PRK13243	333	glyoxylate reductase; Reviewed	96.88
PRK12938	246	acetyacetyl-CoA reductase; Provisional	96.88
PRK06823	315	ornithine cyclodeaminase; Validated	96.87
PRK08264	238	short chain dehydrogenase; Validated	96.87
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	96.86
PRK06407	301	ornithine cyclodeaminase; Provisional	96.86
PRK06181	263	short chain dehydrogenase; Provisional	96.86
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.86
PRK07806	248	short chain dehydrogenase; Provisional	96.85
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.85
PRK07904	253	short chain dehydrogenase; Provisional	96.83
PRK13403	335	ketol-acid reductoisomerase; Provisional	96.83
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.83
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.82
PRK08226	263	short chain dehydrogenase; Provisional	96.82
PRK08017	256	oxidoreductase; Provisional	96.82
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.82
PRK08177	225	short chain dehydrogenase; Provisional	96.82
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.82
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.8
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.79
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.78
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	96.78
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.77
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.76
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.76
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	96.76
PRK06101	240	short chain dehydrogenase; Provisional	96.76
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.76
PRK07775	274	short chain dehydrogenase; Provisional	96.76
TIGR02415	254	23BDH acetoin reductases. One member of this famil	96.74
PRK12746	254	short chain dehydrogenase; Provisional	96.74
PRK06198	260	short chain dehydrogenase; Provisional	96.74
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	96.72
PRK06128	300	oxidoreductase; Provisional	96.72
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	96.71
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.69
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	96.69
PRK09135	249	pteridine reductase; Provisional	96.68
PRK06199	379	ornithine cyclodeaminase; Validated	96.68
PRK07589	346	ornithine cyclodeaminase; Validated	96.66
PRK12937	245	short chain dehydrogenase; Provisional	96.66
COG1028	251	FabG Dehydrogenases with different specificities (	96.66
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	96.66
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.66
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	96.65
PRK08703	239	short chain dehydrogenase; Provisional	96.65
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.64
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.64
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	96.64
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	96.63
PRK12744	257	short chain dehydrogenase; Provisional	96.63
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.62
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.6
PRK07985	294	oxidoreductase; Provisional	96.59
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.59
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	96.58
PRK12743	256	oxidoreductase; Provisional	96.58
PRK09134	258	short chain dehydrogenase; Provisional	96.58
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.58
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	96.57
PRK06701	290	short chain dehydrogenase; Provisional	96.56
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.56
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	96.55
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	96.54
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	96.53
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	96.53
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.52
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.51
PRK07069	251	short chain dehydrogenase; Validated	96.51
PRK12480	330	D-lactate dehydrogenase; Provisional	96.51
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.51
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	96.5
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	96.5
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.5
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.49
PLN00015	308	protochlorophyllide reductase	96.48
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.47
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	96.44
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	96.43
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.42
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.41
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.41
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.4
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	96.4
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	96.39
PRK12935	247	acetoacetyl-CoA reductase; Provisional	96.36
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.35
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	96.34
PRK08655	437	prephenate dehydrogenase; Provisional	96.32
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	96.31
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	96.31
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.3
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.28
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.28
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	96.27
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.27
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.26
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	96.26
PRK07417	279	arogenate dehydrogenase; Reviewed	96.26
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.25
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.24
PLN02896	353	cinnamyl-alcohol dehydrogenase	96.23
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.22
PRK12827	249	short chain dehydrogenase; Provisional	96.22
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	96.22
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	96.21
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	96.21
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	96.21
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	96.2
PRK07041	230	short chain dehydrogenase; Provisional	96.19
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.19
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	96.18
PRK06953	222	short chain dehydrogenase; Provisional	96.18
PRK08219	227	short chain dehydrogenase; Provisional	96.17
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.16
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	96.16
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	96.15
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	96.15
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	96.14
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	96.14
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	96.13
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	96.13
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.12
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	96.11
PRK07574	385	formate dehydrogenase; Provisional	96.1
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	96.09
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	96.08
cd07937	275	DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar	96.07
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.07
PRK06947	248	glucose-1-dehydrogenase; Provisional	96.07
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	96.07
PLN03139	386	formate dehydrogenase; Provisional	96.06
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.05
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	96.05
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	96.04
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	95.98
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.98
PRK07102	243	short chain dehydrogenase; Provisional	95.97
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	95.97
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	95.96
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.96
PRK07577	234	short chain dehydrogenase; Provisional	95.95
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.93
PRK06436	303	glycerate dehydrogenase; Provisional	95.93
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	95.92
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	95.92
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	95.91
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	95.9
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.9
PRK06487	317	glycerate dehydrogenase; Provisional	95.88
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	95.84
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	95.84
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	95.83
PRK06123	248	short chain dehydrogenase; Provisional	95.82
PLN02650	351	dihydroflavonol-4-reductase	95.8
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	95.79
PRK07680	273	late competence protein ComER; Validated	95.78
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	95.77
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.74
PRK08605	332	D-lactate dehydrogenase; Validated	95.74
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	95.74
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	95.73
PLN00198	338	anthocyanidin reductase; Provisional	95.72
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	95.7
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	95.7
PLN02214	342	cinnamoyl-CoA reductase	95.69
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.69
PRK06545	359	prephenate dehydrogenase; Validated	95.68
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	95.67
PRK12330	499	oxaloacetate decarboxylase; Provisional	95.66
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	95.65
PRK12824	245	acetoacetyl-CoA reductase; Provisional	95.64
PLN02686	367	cinnamoyl-CoA reductase	95.61
PRK09496	453	trkA potassium transporter peripheral membrane com	95.61
PLN02256	304	arogenate dehydrogenase	95.59
PLN02688	266	pyrroline-5-carboxylate reductase	95.56
KOG0409	327	consensus Predicted dehydrogenase [General functio	95.55
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	95.53
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	95.5
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	95.49
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	95.47
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	95.46
PRK06932	314	glycerate dehydrogenase; Provisional	95.46
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	95.45
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	95.44
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	95.44
PRK09496	453	trkA potassium transporter peripheral membrane com	95.44
PTZ00082	321	L-lactate dehydrogenase; Provisional	95.44
PRK13304	265	L-aspartate dehydrogenase; Reviewed	95.43
CHL00194	317	ycf39 Ycf39; Provisional	95.42
PLN02653	340	GDP-mannose 4,6-dehydratase	95.4
PLN02306	386	hydroxypyruvate reductase	95.35
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	95.33
PLN02586	360	probable cinnamyl alcohol dehydrogenase	95.3
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.29
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	95.29
PRK06924	251	short chain dehydrogenase; Provisional	95.28
PRK07578	199	short chain dehydrogenase; Provisional	95.28
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	95.28
PRK08328	231	hypothetical protein; Provisional	95.28
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	95.26
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	95.23
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	95.21
PRK12331	448	oxaloacetate decarboxylase; Provisional	95.19
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.13
KOG1199	260	consensus Short-chain alcohol dehydrogenase/3-hydr	95.12
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	95.1
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	95.09
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	95.05
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	95.05
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.04
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	95.02
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	95.0
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	94.99
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	94.98
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	94.98
PLN02712	667	arogenate dehydrogenase	94.96
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.95
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	94.88
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	94.85
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	94.85
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	94.84
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.84
PRK10637	457	cysG siroheme synthase; Provisional	94.82
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	94.8
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	94.76
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	94.72
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	94.72
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	94.72
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	94.72
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	94.7
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	94.7
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.68
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	94.67
PLN02178	375	cinnamyl-alcohol dehydrogenase	94.66
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	94.64
PLN02427	386	UDP-apiose/xylose synthase	94.64
PRK08507	275	prephenate dehydrogenase; Validated	94.64
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	94.61
PTZ00117	319	malate dehydrogenase; Provisional	94.58
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	94.57
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	94.55
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	94.55
PLN02712	667	arogenate dehydrogenase	94.53
PLN02240	352	UDP-glucose 4-epimerase	94.51
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	94.5
PRK14041	467	oxaloacetate decarboxylase; Provisional	94.49
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	94.46
PRK08309	177	short chain dehydrogenase; Provisional	94.43
PLN02514	357	cinnamyl-alcohol dehydrogenase	94.41
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	94.4
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	94.34
PRK09282	592	pyruvate carboxylase subunit B; Validated	94.33
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	94.32
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	94.3
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	94.26
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	94.25
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	94.2
PLN02740	381	Alcohol dehydrogenase-like	94.17

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=100.00  E-value=1.1e-102  Score=833.57  Aligned_cols=454  Identities=82%  Similarity=1.257  Sum_probs=406.5

Q ss_pred             cccccccccCCCCCCcEEEEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCC
Q 012352            9 ASGSKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIW   88 (465)
Q Consensus         9 ~~~~~~~~~~~~~~~~~icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~   88 (465)
                      ||.---|||+++.++|+|||||++++.+|++.+++++...++|+||||+|+|++..+.+++..+++..++|+|||+|+++
T Consensus         8 ~~~~~~~~~~~~~~~~~icv~i~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~~~~~~~~plI~T~R~~~   87 (529)
T PLN02520          8 ASDDLQGSGGVRRNPTLICVPIMADSVDKMLIEMAKAKELGADLVEIRLDFLKNFNPREDLKTLIKQSPLPTLVTYRPKW   87 (529)
T ss_pred             hhhhhhcccccccCCCEEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEEeccccccCCHHHHHHHHhcCCCcEEEEeccHH
Confidence            44555689999999999999999999999999999887789999999999999876666777777777899999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCcEEEEeeccccchhHHHHhcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCC
Q 012352           89 EGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGAD  168 (465)
Q Consensus        89 eGG~~~~~~~~~~~~l~~~~~~~~~~iDiEl~~~~~~~~~l~~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gad  168 (465)
                      |||.++.++++|+++|+.+++.++||||||++..++..+.+...+..++++|+|||||++||+.+|+.+++++|+++|||
T Consensus        88 eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~~vI~S~H~f~~tP~~~el~~~~~~~~~~gaD  167 (529)
T PLN02520         88 EGGQYEGDENKRQDALRLAMELGADYVDVELKVAHEFINSISGKKPEKCKVIVSSHNYENTPSVEELGNLVARIQATGAD  167 (529)
T ss_pred             HCCCCCCCHHHHHHHHHHHHHhCCCEEEEEcCCchhHHHHHHhhhhcCCEEEEEecCCCCCCCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999888776666666668999999999999999999999999999999999


Q ss_pred             EEEEEeecCCHHHHHHHHHHhccCCCCEEEEecCccchhhhhhccccCCccccccccCccCCCCCCCChhhHHhhhcccc
Q 012352          169 IVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQ  248 (465)
Q Consensus       169 ivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApGQ~~~~~l~~~~~~~~  248 (465)
                      |+|||+||++.+|++++++++.+.+.|+|+||||+.|++||+++++|||++||++++++.++||||++++++++++++.+
T Consensus       168 i~Kia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~sRi~~~~~GS~lTy~~~~~~~~sAPGQ~~~~~l~~~~~~~~  247 (529)
T PLN02520        168 IVKIATTALDITDVARMFQITVHSQVPTIGLVMGERGLISRILCPKFGGYLTFGTLEAGKVSAPGQPTIKDLLDLYNFRQ  247 (529)
T ss_pred             EEEEecCCCCHHHHHHHHHHHhhcCCCEEEEecCCCCchheecccccCCceeeeecCcccccCCCCCCHHHHHHHhhhhc
Confidence            99999999999999999998777789999999999999999999999999999999865579999999999999999999


Q ss_pred             cCCCcceeeecCCCccccccHHHHHHHHHHcCCCeeEeccccccHHHHHHHhhcCCCCeeEeccCchHHHhhhccccCHH
Q 012352          249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTV  328 (465)
Q Consensus       249 ~~~~~~~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~~~~  328 (465)
                      +.++|++|+|+|+||+||+||.|||++|+++|+|+.|.++++++++++++.++.++|.|+|||||||+++++++|++++.
T Consensus       248 ~~~~t~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~lD~~~~~  327 (529)
T PLN02520        248 IGPDTKVYGIIGKPVGHSKSPILHNEAFKSVGFNGVYVHLLVDDLAKFLQTYSSPDFAGFSCTIPHKEDALKCCDEVDPI  327 (529)
T ss_pred             ccCCceEEEEEcCCcccccCHHHHHHHHHHCCCCcEEEEeehhhHHHHHHHHhhCCCCEEEECcCCHHHHHHHhccCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCCeEE
Q 012352          329 AKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV  408 (465)
Q Consensus       329 A~~~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~  408 (465)
                      |+.+||||||+++..+|+|+||||||.||+++|++.+... +..+..+.++++|+|+|+|+||+|++++++|++.|++|+
T Consensus       328 A~~iGAVNTvv~~~~~g~l~G~NTD~~G~~~~l~~~~~~~-~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~  406 (529)
T PLN02520        328 AKSIGAINTIIRRPSDGKLVGYNTDYIGAISAIEDGLRAS-GSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVV  406 (529)
T ss_pred             HHHhCCceEEEEeCCCCEEEEEcccHHHHHHHHHhhhccc-ccccccccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE
Confidence            9999999999986227899999999999999998643110 000001245778999999999999999999999999999


Q ss_pred             EEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCCCCCCCCCCCCC
Q 012352          409 IANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIP  463 (465)
Q Consensus       409 i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~gm~~~~~~~p~~  463 (465)
                      ++||+.+++++++++++...+.++++.+.....+|+||||||+||.+..+.+|++
T Consensus       407 i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~~~pl~  461 (529)
T PLN02520        407 IANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNVDETPIS  461 (529)
T ss_pred             EEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCCCCCccc
Confidence            9999999999999988654455555432122357999999999999877777765

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=100.00  E-value=5.2e-90  Score=728.15  Aligned_cols=401  Identities=29%  Similarity=0.438  Sum_probs=360.2

Q ss_pred             EEEEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 012352           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVL  104 (465)
Q Consensus        25 ~icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~~l  104 (465)
                      ||||||++++.+|++++++.+. .++|+||||+|+|++.++.+ ++.+++..+.|++ |+|+++     ++++++|++++
T Consensus         1 ~icv~i~~~~~~e~~~~~~~~~-~~~D~vE~R~D~~~~~~~~~-~~~l~~~~~~pil-T~R~~~-----~~~~~~~~~~l   72 (477)
T PRK09310          1 MLCATISGPSFLEAKQQILRSL-KLVDCIELRVDLLLSLSDLE-LKKLIELAPIPIL-TWKKHE-----SCSQAAWIDKM   72 (477)
T ss_pred             CEEEEecCCCHHHHHHHHHHhc-ccCCEEEEEehhhccCCHHH-HHHHHhcCCCceE-EeccCc-----cCCHHHHHHHH
Confidence            6999999999999999999876 67999999999998776543 7777664456766 999987     45889999999


Q ss_pred             HHHHHhCCcEEEEeeccccchhHHHHhcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHH
Q 012352          105 RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVAR  184 (465)
Q Consensus       105 ~~~~~~~~~~iDiEl~~~~~~~~~l~~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKia~~~~~~~D~~~  184 (465)
                      +.+++.++||||||++.+++..+++... +++++||+|||||+    .+++.+++++|+++||||+|||+||++.+|+++
T Consensus        73 ~~~~~~~~d~vDiEl~~~~~~~~~l~~~-~~~~kvI~S~Hdf~----~~~l~~~~~~~~~~gaDi~Kia~~a~~~~D~l~  147 (477)
T PRK09310         73 QSLAKLNPNYLDIDKDFPKEALIRIRKL-HPKIKIILSYHTSE----HEDIIQLYNEMLASAADYYKIAVSSSSSTDLLN  147 (477)
T ss_pred             HHHHHhCCCEEEEEecCCHHHHHHHHHh-CCCCEEEEEcCCCC----cchHHHHHHHHHHcCCCEEEEeeCCCCHHHHHH
Confidence            9999999999999999988877777543 35999999999994    258999999999999999999999999999999


Q ss_pred             HHHHhccCCCCEEEEecCccchhhhhhccccCCccccccccCccCCCCCCCChhhHHhhhcccccCCCcceeeecCCCcc
Q 012352          185 VFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVG  264 (465)
Q Consensus       185 ll~~~~~~~~p~i~~~MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApGQ~~~~~l~~~~~~~~~~~~~~~~~~iG~pi~  264 (465)
                      +++++...+.|+|+||||+.|++||++++.|||++||+++..+.++||||++++++. .|++.+++.+|++|||+|+||+
T Consensus       148 ll~~~~~~~~p~i~i~MG~~G~~SRil~~~~gS~~Tfa~~~~~~~~APGQi~~~~l~-~~~~~~~~~~t~~~~liG~pi~  226 (477)
T PRK09310        148 IIHQKRSLPENTTVLCMGGMGRPSRILSPLLQNAFNYAAGIGAPPVAPGQLSLEHLL-FYNYANLSAQSPIYGLIGDPVD  226 (477)
T ss_pred             HHHHHhhCCCCEEEEEeCCCchHHhhcchhhcCccccccccCccccCCCCcCHHHHH-hcchhccCCCceEEEEECCCcc
Confidence            999988878899999999999999999999999999999876445799999999998 6788999888999999999999


Q ss_pred             ccccHHHHHHHHHHcCCCeeEeccccc--cHHHHHHHhhcCCCCeeEeccCchHHHhhhccccCHHHHhccceeeEEEec
Q 012352          265 HSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ  342 (465)
Q Consensus       265 hS~SP~~hn~~f~~~gl~~~y~~~~~~--~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~~~~A~~~gavNtv~~~~  342 (465)
                      ||+||.|||++|+++|+|+.|.+++++  ++.++++.++.++|.|+|||||||++|++++|++++.|+.+||||||+++ 
T Consensus       227 hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~~d~~~~~A~~iGAVNTv~~~-  305 (477)
T PRK09310        227 RSISHLSHNPLFSQLSLNCPYIKLPLTPQELPKFFSTIRDLPFLGLSVTMPLKTAVLDFLDKLDPSVKLCGSCNTLVFR-  305 (477)
T ss_pred             cccCHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHhccCCHHHHHhCcceEEEee-
Confidence            999999999999999999999999884  79999999999999999999999999999999999999999999999987 


Q ss_pred             cCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Q 012352          343 SDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAE  422 (465)
Q Consensus       343 ~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~  422 (465)
                       +|+|+||||||.||+.+|++.           +.++.+++++|+|+||+|+++++.|.+.|++|++++|+.++++++++
T Consensus       306 -~g~l~G~NTD~~G~~~~l~~~-----------~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~  373 (477)
T PRK09310        306 -NGKIEGYNTDGEGLFSLLKQK-----------NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALAS  373 (477)
T ss_pred             -CCEEEEEecCHHHHHHHHHhc-----------CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence             899999999999999999753           24567899999999999999999999999999999999999999988


Q ss_pred             HHCCcccchhcccccCCCCeeEEEecCCCCCC
Q 012352          423 TVGGHALSLADLENFNPEDGMILANTTSIGMQ  454 (465)
Q Consensus       423 ~~~~~~~~~~~l~~~~~~~~DilInaT~~gm~  454 (465)
                      .++....+++++.+  +.++|+||||||.||.
T Consensus       374 ~~~~~~~~~~~~~~--l~~~DiVInatP~g~~  403 (477)
T PRK09310        374 RCQGKAFPLESLPE--LHRIDIIINCLPPSVT  403 (477)
T ss_pred             HhccceechhHhcc--cCCCCEEEEcCCCCCc
Confidence            87654445554433  4578999999999983

>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=3.2e-54  Score=420.81  Aligned_cols=235  Identities=29%  Similarity=0.472  Sum_probs=210.8

Q ss_pred             ccccccCCCCCCcEEEEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhH----HHHHHhhC-CCcEEEEecc
Q 012352           12 SKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN----IKTLIKES-PVPTLFTYRP   86 (465)
Q Consensus        12 ~~~~~~~~~~~~~~icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~----l~~l~~~~-~~PiI~T~R~   86 (465)
                      +|+.+-.++.++|+|||||.++|.+|++++++++...++|+||||+|+|++++..+.    +..+++.. ++|+|||+|+
T Consensus         4 ~~~~~~~~~~~~~~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~   83 (253)
T PRK02412          4 VTVKNLVIGEGAPKIIVPIMGKTLEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGKPLLFTFRT   83 (253)
T ss_pred             eEEeceEeCCCCcEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence            367888899999999999999999999999998877899999999999987644332    33344433 6899999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CcEEEEeeccccchhHHHHh-cCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHH
Q 012352           87 IWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQA  164 (465)
Q Consensus        87 ~~eGG~~~~~~~~~~~~l~~~~~~~-~~~iDiEl~~~~~~~~~l~~-~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~  164 (465)
                      ++|||.++.++++|+++++.+++.+ |||||||++.+.+..+++.. .+..++++|+|||+|+.||+.+++.+++++|++
T Consensus        84 ~~eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tP~~~~l~~~~~~~~~  163 (253)
T PRK02412         84 AKEGGEIALSDEEYLALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEHGVKVVLSYHDFEKTPPKEEIVERLRKMES  163 (253)
T ss_pred             hhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHHcCCEEEEeeCCCCCCcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999 99999999988777776653 456899999999999999999999999999999


Q ss_pred             cCCCEEEEEeecCCHHHHHHHHHHhcc-----CCCCEEEEecCccchhhhhhccccCCccccccccCccCCCCCCCChhh
Q 012352          165 SGADIVKFATTALDITDVARVFQITVH-----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKD  239 (465)
Q Consensus       165 ~gadivKia~~~~~~~D~~~ll~~~~~-----~~~p~i~~~MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApGQ~~~~~  239 (465)
                      +||||+|+|+||++.+|++++++++.+     .+.|+|+|+||+.|++||+++++|||++||++++++  +||||+++++
T Consensus       164 ~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG~~G~~SRil~~~~GS~~ty~~~~~~--sAPGQ~~~~e  241 (253)
T PRK02412        164 LGADIVKIAVMPQSEQDVLTLLNATREMKELYADQPLITMSMGKLGRISRLAGEVFGSSWTFASLDKA--SAPGQISVED  241 (253)
T ss_pred             hCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCchHHHcchhhhCCcceecCCCCC--CCCCCCCHHH
Confidence            999999999999999999999998643     368999999999999999999999999999999975  9999999999


Q ss_pred             HHhhhcccc
Q 012352          240 LLDLYNFRQ  248 (465)
Q Consensus       240 l~~~~~~~~  248 (465)
                      |++++++..
T Consensus       242 l~~i~~~l~  250 (253)
T PRK02412        242 LRRILEILH  250 (253)
T ss_pred             HHHHHHHhc
Confidence            999998754

>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.7e-52  Score=395.69  Aligned_cols=222  Identities=32%  Similarity=0.536  Sum_probs=197.9

Q ss_pred             CcEEEEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCC-CchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHH
Q 012352           23 PTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNF-NPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENER  100 (465)
Q Consensus        23 ~~~icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~-~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~  100 (465)
                      .|+||+|+.+.+.+++.+++++.+..++|++|||+|+|+.- +..+....+++. ...|+|||+|+.+|||.|+.++++|
T Consensus         1 ~~~i~~~v~~~~~~~~~e~~~~~~~~~~Di~E~RvD~l~~~~~~~~~~~~~~e~~~~~~~IfT~R~~~EGG~~~~~~~~~   80 (231)
T COG0710           1 MPKIIVPVVGLDIAELKEQAEKSKELDADIVELRVDLLESNVEVLEVAKALREKDPDKPLIFTFRTVKEGGEFPGSEEEY   80 (231)
T ss_pred             CCEEEEEeecCCHHHHHHHHHHhhccCCCEEEEeechhcccchHHHHHHHHHHhccCCceEEEEeehhhcCCCCCCHHHH
Confidence            48999999999999999999999889999999999999921 122344445544 3679999999999999999999999


Q ss_pred             HHHHHHHHHhC-CcEEEEeeccccchhHHHHhcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCH
Q 012352          101 VDVLRLAMELG-ADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDI  179 (465)
Q Consensus       101 ~~~l~~~~~~~-~~~iDiEl~~~~~~~~~l~~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKia~~~~~~  179 (465)
                      +++++.+++.+ ++|||||+....+..+++.... ...++|+|||||++||+++++.+++.+|.++||||+|+|+||++.
T Consensus        81 i~ll~~la~~~~~d~iDiEl~~~~~~~~~~~~~~-~~~~vI~SyH~F~~TP~~~~i~~~l~km~~~~aDivKiAvm~~~~  159 (231)
T COG0710          81 IELLKKLAELNGPDYIDIELSSPEDDVKEIIKFA-KKHGVIVSYHDFEKTPPLEEIIERLDKMESLGADIVKIAVMPQSK  159 (231)
T ss_pred             HHHHHHHHhhcCCCEEEEEccCcchhHHHHHhcc-ccCCEEEEeccCCCCCcHHHHHHHHHHHHhhCCCeEEEEecCCCH
Confidence            99999999976 9999999999987766666432 333399999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcc---CCCCEEEEecCccchhhhhhccccCCccccccccCccCCCCCCCChhhHHhhhccc
Q 012352          180 TDVARVFQITVH---SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFR  247 (465)
Q Consensus       180 ~D~~~ll~~~~~---~~~p~i~~~MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApGQ~~~~~l~~~~~~~  247 (465)
                      +|++++++++..   .+.|+|+||||+.|++||+++++|||++||++++++  +||||++++++++++..+
T Consensus       160 ~DvL~ll~~~~~~~~~~~p~i~i~MG~~G~~SRv~~~~~GS~~tya~~~~~--sAPGQi~v~~l~~~~~~l  228 (231)
T COG0710         160 EDVLDLLEATREFKEAEKPVITISMGKTGKISRVAGPVFGSPITYASLDKP--SAPGQISVDELRKILTLL  228 (231)
T ss_pred             HHHHHHHHHHHhccccCCCEEEEecCCCCchhhhhHhhhCCceeEeecCCC--CCCCCCCHHHHHHHHHHh
Confidence            999999999875   689999999999999999999999999999999975  999999999999988764

>TIGR01093 aroD 3-dehydroquinate dehydratase, type I

Probab=100.00  E-value=9.3e-52  Score=398.24  Aligned_cols=217  Identities=38%  Similarity=0.615  Sum_probs=191.8

Q ss_pred             EEEEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhh-----CCCcEEEEeccCCCCCCCCCCHHH
Q 012352           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-----SPVPTLFTYRPIWEGGQYDGDENE   99 (465)
Q Consensus        25 ~icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~-----~~~PiI~T~R~~~eGG~~~~~~~~   99 (465)
                      +||||+++++.+++..+++++ ..++|+||||+|+|.+..+.+.+..+.+.     .++|+|||+|+++|||.++.++++
T Consensus         1 ~i~v~~~~~~~~~~~~~~~~~-~~~aD~vElRlD~l~~~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~eGG~~~~~~~~   79 (228)
T TIGR01093         1 KIFVPLTAPDLEEALATAEKI-CKGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKPLIFTIRTISEGGKFPGNEEE   79 (228)
T ss_pred             CEEEEccCCCHHHHHHHHHHh-ccCCCEEEEEechhcccCcHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHH
Confidence            599999999999999999987 77999999999999865443222222211     478999999999999999999999


Q ss_pred             HHHHHHHH-HHhCCcEEEEeeccccchhHHHHh-cCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecC
Q 012352          100 RVDVLRLA-MELGADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTAL  177 (465)
Q Consensus       100 ~~~~l~~~-~~~~~~~iDiEl~~~~~~~~~l~~-~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKia~~~~  177 (465)
                      |+++++.+ .+.++||||||++.+.+..+++.. .+.++++||+|||+|++||+.+++.+++++|+++||||+|+|+||+
T Consensus        80 ~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~a~  159 (228)
T TIGR01093        80 YLEELKRAADSPGPDFVDIELFLPDDAVKELINIAKKGGTKIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIAVMAN  159 (228)
T ss_pred             HHHHHHHHHHhCCCCEEEEEccCCHHHHHHHHHHHHHCCCEEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEeccC
Confidence            99999988 566799999999998877776653 4568999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHhccC----CCCEEEEecCccchhhhhhccccCCccccccccCccCCCCCCCChhhHHhhh
Q 012352          178 DITDVARVFQITVHS----QVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLY  244 (465)
Q Consensus       178 ~~~D~~~ll~~~~~~----~~p~i~~~MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApGQ~~~~~l~~~~  244 (465)
                      +.+|+++|+.++.+.    ++|+|+|+||+.|++||+++++|||++||++++++  +||||+++++|++++
T Consensus       160 ~~~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~--sApGQ~~~~~l~~~~  228 (228)
T TIGR01093       160 SKEDVLTLLEITNKVDEHADVPLITMSMGDRGKISRVLGAVFGSVLTFGSLGKA--SAPGQISVDDLRELL  228 (228)
T ss_pred             CHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCChhHhhccccccccceeccCCCC--CCCCCcCHHHHHhhC
Confidence            999999999987543    57999999999999999999999999999999864  999999999999864

Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.

>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4

Probab=100.00  E-value=1.2e-51  Score=396.51  Aligned_cols=217  Identities=39%  Similarity=0.645  Sum_probs=183.9

Q ss_pred             EEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCc---hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 012352           27 CVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNP---RENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDV  103 (465)
Q Consensus        27 cv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~~  103 (465)
                      ||||+++|.++++++++++...++|+||||+|+|.+.+.   .+.++.+++..++|+|||+|+++|||.+..++++|+++
T Consensus         1 cv~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~l   80 (224)
T PF01487_consen    1 CVPLTGSTLEELLAELEEAESSGADAVELRLDYLENDSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEYLEL   80 (224)
T ss_dssp             EEEE--SSHHHHHHHHHHHHHTTTSEEEEEGGGSTTTSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHHHHH
T ss_pred             CEeeCCCCHHHHHHHHHHHHhcCCCEEEEEeccccccChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHHHHH
Confidence            999999999999999999877699999999999996322   34677777778999999999999999999999999999


Q ss_pred             HHHHHHhCCcEEEEeeccccchhHHHHhcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHH
Q 012352          104 LRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVA  183 (465)
Q Consensus       104 l~~~~~~~~~~iDiEl~~~~~~~~~l~~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKia~~~~~~~D~~  183 (465)
                      ++.+++.|++|||||++..++........+.++++||+|||+|+.||+++++.+++++|.++||||+|+|+|+++.+|++
T Consensus        81 l~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~  160 (224)
T PF01487_consen   81 LERAIRLGPDYIDIELDLFPDDLKSRLAARKGGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMANSPEDVL  160 (224)
T ss_dssp             HHHHHHHTSSEEEEEGGCCHHHHHHHHHHHHTTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-SSHHHHH
T ss_pred             HHHHHHcCCCEEEEEcccchhHHHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCHHHHH
Confidence            99999999999999999555443323333468999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccC----CCCEEEEecCccchhhhhhccccCCccccccccCccCCCCCCCChhhHHhhhc
Q 012352          184 RVFQITVHS----QVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN  245 (465)
Q Consensus       184 ~ll~~~~~~----~~p~i~~~MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApGQ~~~~~l~~~~~  245 (465)
                      ++++++.+.    +.|+|+|+||+.|++||+++++|||++||++.+++  +||||+++++|+++|+
T Consensus       161 ~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~~t~~~~~~~--sApGQl~~~~l~~~~~  224 (224)
T PF01487_consen  161 RLLRFTKEFREEPDIPVIAISMGELGRISRILNPIFGSVLTFASAGEA--SAPGQLTLEELREILH  224 (224)
T ss_dssp             HHHHHHHHHHHHTSSEEEEEEETGGGHHHHHCHHHHTBSEEEEBSSS---SSTT-EBHHHHHHHHH
T ss_pred             HHHHHHHHHhhccCCcEEEEEcCCCchhHHHHHhhhcCCcccCCCCCC--CCCCCCcHHHHHHHhC
Confidence            999987653    68999999999999999999999999999977754  9999999999999875

2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....

>PRK13575 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=4.7e-50  Score=386.85  Aligned_cols=220  Identities=24%  Similarity=0.403  Sum_probs=183.8

Q ss_pred             CcEEEEeeccCC-HHHH-HHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHh-----hCCCcEEEEeccCCCCCCCCC
Q 012352           23 PTLICVPIMGES-VDKM-VVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK-----ESPVPTLFTYRPIWEGGQYDG   95 (465)
Q Consensus        23 ~~~icv~l~~~t-~~e~-~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~-----~~~~PiI~T~R~~~eGG~~~~   95 (465)
                      .+.|++++.... +++. .++++.. ..++|+||||+|+|++.+.. .+..+++     ..+.|+|||+|+++|||.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vElRlD~l~~~~~~-~~~~~i~~l~~~~~~~p~I~T~Rt~~EGG~~~~   80 (238)
T PRK13575          3 HVEVAATIAPQLSIEETLIQKINHR-IDAIDIIELRIDQWENVTVD-QLAEMITKLKVLQDSFKLLVTYRTKLQGGYGQF   80 (238)
T ss_pred             ceeEeeeeccccccchhHHHHHHhc-CCCCCEEEEEeccccCCCHH-HHHHHHHHHHhhcCCCCEEEEeCChhhCCCCCC
Confidence            456677776664 5665 4444443 46799999999999875432 3443332     146899999999999999999


Q ss_pred             CHHHHHHHHHHHHHhC-CcEEEEeecc--ccchhHHHH-hcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEE
Q 012352           96 DENERVDVLRLAMELG-ADYIDVELQV--AREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVK  171 (465)
Q Consensus        96 ~~~~~~~~l~~~~~~~-~~~iDiEl~~--~~~~~~~l~-~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivK  171 (465)
                      ++++|.++++.++..+ +||||||++.  ..+..+++. ..+..+++||+|||||++||+.+++.+++++|+++||||+|
T Consensus        81 ~~~~~~~ll~~~~~~~~~d~vDiE~~~~~~~~~~~~l~~~~~~~~~~vI~S~H~F~~TP~~~~l~~~~~~m~~~gaDi~K  160 (238)
T PRK13575         81 TNDLYLNLLSDLANINGIDMIDIEWQADIDIEKHQRLITHLQQYNKEVVISHHNFESTPPLDELKFIFFKMQKFNPEYVK  160 (238)
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEEcccCCChHHHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence            9999999998888765 8999999986  333344443 34567899999999999999999999999999999999999


Q ss_pred             EEeecCCHHHHHHHHHHhcc----CCCCEEEEecCccchhhhhhccccCCccccccccCccCCCCCCCChhhHHhhhcc
Q 012352          172 FATTALDITDVARVFQITVH----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (465)
Q Consensus       172 ia~~~~~~~D~~~ll~~~~~----~~~p~i~~~MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApGQ~~~~~l~~~~~~  246 (465)
                      ||+||++.+|+++|++++.+    .+.|+|+||||+.|++||+++++|||++||++++++  +||||+++++|++++++
T Consensus       161 iAv~~~~~~Dvl~Ll~~~~~~~~~~~~p~i~i~MG~~G~iSRi~~~~~GS~~Tya~l~~~--sAPGQi~v~~l~~i~~~  237 (238)
T PRK13575        161 LAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALSYGCIGEP--QAPGQIHVTDLKAQVTL  237 (238)
T ss_pred             EEecCCCHHHHHHHHHHHHHHHhccCCCEEEEeCCCCCchhhcchhhhCCceEecCCCCC--CCCCCCCHHHHHHHHHh
Confidence            99999999999999998654    367999999999999999999999999999999975  99999999999998864

>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase

Probab=100.00  E-value=9.9e-50  Score=383.55  Aligned_cols=216  Identities=37%  Similarity=0.607  Sum_probs=191.6

Q ss_pred             EEEEeeccC-CHHHHHHHHHhhhhcCCCEEEEEecCCCCCC---chhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHH
Q 012352           25 LICVPIMGE-SVDKMVVDMGKANASGADLVEIRLDGLKNFN---PRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENER  100 (465)
Q Consensus        25 ~icv~l~~~-t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~---~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~  100 (465)
                      +||+||.++ +.++..++++...  ++|+||||+|+|.+..   ..++++.+++..+.|+|||+|+++|||.+..++++|
T Consensus         1 ~i~~~i~~~~~~~e~~~~~~~~~--~aD~vElR~D~~~~~~~~~~~~~~~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~   78 (225)
T cd00502           1 KICVPLTGPDLLEEALSLLELLL--GADAVELRVDLLEDPSIDDVAEQLSLLRELTPLPIIFTVRTKSEGGNFEGSEEEY   78 (225)
T ss_pred             CEEEEecCCCCHHHHHHHHHHhc--CCCEEEEEEeeccccchHHHHHHHHHHHHhCCCCEEEEEcccccCCCcCCCHHHH
Confidence            589999999 9999998777643  8999999999998642   234566777666799999999999999999999999


Q ss_pred             HHHHHHHHHhCCcEEEEeeccccchhHHHHhcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHH
Q 012352          101 VDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDIT  180 (465)
Q Consensus       101 ~~~l~~~~~~~~~~iDiEl~~~~~~~~~l~~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKia~~~~~~~  180 (465)
                      +++++.+++.+++|||||++. +...+.+...+.++++||+|||+|++||+.+++.+++++|.++||||+|+|+||++.+
T Consensus        79 ~~ll~~~~~~~~d~vDiEl~~-~~~~~~~~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKla~~~~~~~  157 (225)
T cd00502          79 LELLEEALKLGPDYVDIELDS-ALLEELINSRKKGNTKIIGSYHDFSGTPSDEELVSRLEKMAALGADIVKIAVMANSIE  157 (225)
T ss_pred             HHHHHHHHHHCCCEEEEEecc-hHHHHHHHHHHhCCCEEEEEeccCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCHH
Confidence            999999999999999999987 3333323333468999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccC----CCCEEEEecCccchhhhhhccccCCccccccccCccCCCCCCCChhhHHhhhc
Q 012352          181 DVARVFQITVHS----QVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN  245 (465)
Q Consensus       181 D~~~ll~~~~~~----~~p~i~~~MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApGQ~~~~~l~~~~~  245 (465)
                      |++++++++...    +.|+|+|+||+.|++||++++.|||++||++++++  +||||+++++|+++++
T Consensus       158 D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~--sApGQ~~~~~l~~~~~  224 (225)
T cd00502         158 DNLRLLKFTRQVKNLYDIPLIAINMGELGKLSRILSPVFGSPLTYASLPEP--SAPGQLSVEELKQALS  224 (225)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEcCCCCchhhccccccCCcccccCCCCC--CCCCCcCHHHHHHHHh
Confidence            999999987654    46999999999999999999999999999999874  9999999999998876

) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=3.9e-49  Score=387.57  Aligned_cols=203  Identities=40%  Similarity=0.670  Sum_probs=177.6

Q ss_pred             cCCCcceeeecCCCccccccHHHHHHHHHHcCCCeeEeccccc--cHHHHHHHhhcCCCCeeEeccCchHHHhhhccccC
Q 012352          249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD  326 (465)
Q Consensus       249 ~~~~~~~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~~  326 (465)
                      ++..|++|++||+||+||+||.|||.+|+++|+|+.|.+++++  +++++++.++.+++.|+|||||||+++++++|+++
T Consensus         2 ~~~~t~~~~viG~Pi~HS~SP~~Hn~~~~~lGl~~~Y~a~~v~~~~l~~~v~~~~~~g~~G~NVTiP~Ke~~~~~lD~l~   81 (283)
T COG0169           2 MNGKTKLFGVIGNPISHSLSPRMHNAAFRALGLDYVYLAFEVPPEDLPEAVSGIRALGFRGLNVTIPFKEAALPLLDELS   81 (283)
T ss_pred             CCCCceEEEEEcCCcccCcCHHHHHHHHHHcCCCceEEEeecCHHHHHHHHHHHHhcCCCeeEECCccHHHHHHHHhcCC
Confidence            4567899999999999999999999999999999999999995  99999999999999999999999999999999999


Q ss_pred             HHHHhccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCC-
Q 012352          327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-  405 (465)
Q Consensus       327 ~~A~~~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~-  405 (465)
                      +.|+.+||||||+++. +|+|+||||||.||.++|++...         ..+..+++++|+||||++||++++|++.|+ 
T Consensus        82 ~~A~~iGAVNTl~~~~-~g~l~G~NTD~~G~~~~L~~~~~---------~~~~~~~~vlilGAGGAarAv~~aL~~~g~~  151 (283)
T COG0169          82 PRARLIGAVNTLVRED-DGKLRGYNTDGIGFLRALKEFGL---------PVDVTGKRVLILGAGGAARAVAFALAEAGAK  151 (283)
T ss_pred             HHHHHhCCceEEEEcc-CCEEEEEcCCHHHHHHHHHhcCC---------CcccCCCEEEEECCcHHHHHHHHHHHHcCCC
Confidence            9999999999999982 49999999999999999987421         145568999999999999999999999997 


Q ss_pred             eEEEEECCHHHHHHHHHHHCCcc-----cchhcccccCCCCeeEEEecCCCCCCCCCCCCCCC
Q 012352          406 RVVIANRTYDRARELAETVGGHA-----LSLADLENFNPEDGMILANTTSIGMQPKVDETPIP  463 (465)
Q Consensus       406 ~v~i~~R~~~~a~~la~~~~~~~-----~~~~~l~~~~~~~~DilInaT~~gm~~~~~~~p~~  463 (465)
                      +|+|+|||.+++++|++.++...     ..+.++..  ..++|+||||||+||.+..+.+|++
T Consensus       152 ~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~--~~~~dliINaTp~Gm~~~~~~~~~~  212 (283)
T COG0169         152 RITVVNRTRERAEELADLFGELGAAVEAAALADLEG--LEEADLLINATPVGMAGPEGDSPVP  212 (283)
T ss_pred             EEEEEeCCHHHHHHHHHHhhhccccccccccccccc--ccccCEEEECCCCCCCCCCCCCCCc
Confidence            89999999999999999987421     12222322  1158999999999999875444544

>PRK13576 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=3.4e-49  Score=374.13  Aligned_cols=204  Identities=23%  Similarity=0.296  Sum_probs=175.2

Q ss_pred             CCcEEEEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHH
Q 012352           22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERV  101 (465)
Q Consensus        22 ~~~~icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~  101 (465)
                      ++|+||+||++++.++++++.+.   .++|+||||+|+|++....  +..+++....|+|||+|+++|||.+++++++|+
T Consensus         1 ~~p~i~vpi~~~~~e~i~~~~~~---~~aD~vE~RlD~l~~~~~~--~~~~l~~~~~plI~T~R~~~EGG~~~~~~~~r~   75 (216)
T PRK13576          1 MRPLIVASLPIKKIEDLKLIGNF---LDADLIELRLDYLKDREVS--VIEFLDKYKDKLIVTLRDKAEGGINELDDELKI   75 (216)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhc---CCCCEEEEEeccccccchh--HHHHHHhcCCCEEEEeCChHHCCCCcCCHHHHH
Confidence            47999999999999999998654   5899999999999876443  333444456799999999999999999999999


Q ss_pred             HHHHHHHHhCCcEEEEeeccccchhHHHHhcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCH-H
Q 012352          102 DVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDI-T  180 (465)
Q Consensus       102 ~~l~~~~~~~~~~iDiEl~~~~~~~~~l~~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKia~~~~~~-~  180 (465)
                      ++++.+++.+. ++|||+....+..       ..+.++|+|||||++||+.++|.+++++|++ ||||+|+|+||++. .
T Consensus        76 ~ll~~~~~~~~-~vDiE~~~a~~~~-------~~~~~vI~S~HdF~~TP~~~eL~~~l~~m~~-gaDI~KiA~mp~~~~~  146 (216)
T PRK13576         76 SLLKELYDKQF-LYDVEASFLQKYN-------VPYDNKIVSIHYFDYLPTSEEVKEIVSKFYE-KAFSVKIAVLGLKGYK  146 (216)
T ss_pred             HHHHHHHHhCC-eEEEEcchhhhcC-------CCCCeEEEEECCCCCCcCHHHHHHHHHHHHh-cCCEEEEEeCCCCchH
Confidence            99999999875 7799998543321       1246799999999999999999999999987 99999999999985 7


Q ss_pred             HHH-HHHHHhccCCCCEEEEecCccchhhhhhccccCCccccccccCccCCCCCCCChhhHHhhhccc
Q 012352          181 DVA-RVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFR  247 (465)
Q Consensus       181 D~~-~ll~~~~~~~~p~i~~~MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApGQ~~~~~l~~~~~~~  247 (465)
                      |++ +|+.   ..  .+++|+||+.| +||+++++|||++||++++++  +||||+++++|++++++.
T Consensus       147 d~l~~Ll~---~~--~~i~~~MG~~G-iSRi~~~~fGS~lTy~~~~~~--sAPGQi~v~~l~~i~~~l  206 (216)
T PRK13576        147 EVLLPLLE---YE--NVTVMPMSVNP-LERIAFSLLGSKLIYSYAIEP--TAQGQLHYKKVKQILNYL  206 (216)
T ss_pred             hHHHHHhc---cc--CccEEEcCCcc-HHHHHHHHhCCeeEEEecCCC--CCCCCccHHHHHHHHHHH
Confidence            775 5554   22  45889999999 999999999999999999975  999999999999999975

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=100.00  E-value=2.1e-48  Score=385.13  Aligned_cols=198  Identities=27%  Similarity=0.413  Sum_probs=171.5

Q ss_pred             CcceeeecCCCccccccHHHHHHHHHHcCCCeeEecccc-------ccHHHHHHHhhcCCCCeeEeccCchHHHhhhccc
Q 012352          252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV-------DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDE  324 (465)
Q Consensus       252 ~~~~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~-------~~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~  324 (465)
                      ++++||+||+||+||+||.|||++|+++|+|+.|.++++       ++++++++.++.++|.|+|||||||++|++++|+
T Consensus         3 ~~~~~gliG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~~~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~lD~   82 (283)
T PRK14027          3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDE   82 (283)
T ss_pred             CceEEEEECCCccccCCHHHHHHHHHHcCCCeEEEEEecccccCCHHHHHHHHHHHHhcCCCEEEECccCHHHHHHHhhh
Confidence            578999999999999999999999999999999999986       3799999999999999999999999999999999


Q ss_pred             cCHHHHhccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCC
Q 012352          325 VDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKG  404 (465)
Q Consensus       325 ~~~~A~~~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G  404 (465)
                      +++.|+.+||||||+++. +|+|+||||||.||+++|++..           .+.++|+++|+|+||+|||++++|+++|
T Consensus        83 l~~~A~~iGAVNTv~~~~-~g~l~G~NTD~~Gf~~~L~~~~-----------~~~~~k~vlilGaGGaarAi~~aL~~~g  150 (283)
T PRK14027         83 VSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEGL-----------PNAKLDSVVQVGAGGVGNAVAYALVTHG  150 (283)
T ss_pred             CCHHHHHhCCceEEEECC-CCcEEEEcCCHHHHHHHHHhcC-----------cCcCCCeEEEECCcHHHHHHHHHHHHCC
Confidence            999999999999999852 8999999999999999997532           2456899999999999999999999999


Q ss_pred             C-eEEEEECCHHHHHHHHHHHCCc----c---cchhcccccCCCCeeEEEecCCCCCCCCCCCCCCC
Q 012352          405 A-RVVIANRTYDRARELAETVGGH----A---LSLADLENFNPEDGMILANTTSIGMQPKVDETPIP  463 (465)
Q Consensus       405 ~-~v~i~~R~~~~a~~la~~~~~~----~---~~~~~l~~~~~~~~DilInaT~~gm~~~~~~~p~~  463 (465)
                      + +|+|+||+.+++++|++++...    .   .++.++.+ ....+|+||||||+||.+. ++.|++
T Consensus       151 ~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~-~~~~~divINaTp~Gm~~~-~~~~~~  215 (283)
T PRK14027        151 VQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIED-VIAAADGVVNATPMGMPAH-PGTAFD  215 (283)
T ss_pred             CCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHH-HHhhcCEEEEcCCCCCCCC-CCCCCC
Confidence            8 8999999999999999887421    1   11111222 2346899999999999865 445654

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=100.00  E-value=4.8e-48  Score=383.73  Aligned_cols=200  Identities=31%  Similarity=0.524  Sum_probs=174.1

Q ss_pred             cCCCcceeeecCCCccccccHHHHHHHHHHcCCCeeEeccccc--cHHHHHHHhhcCCCCeeEeccCchHHHhhhccccC
Q 012352          249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD  326 (465)
Q Consensus       249 ~~~~~~~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~~  326 (465)
                      ++.+|++|++||+||+||+||.|||++|+++|+|+.|.+++++  +|+++++.++..+|.|+|||||||++|++++|+++
T Consensus         3 ~~~~t~~~gliG~Pi~hSlSP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~~~~~~D~l~   82 (288)
T PRK12749          3 VTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELT   82 (288)
T ss_pred             cCCCceEEEEECCCcccccCHHHHHHHHHHcCCCeEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhccCC
Confidence            3456889999999999999999999999999999999999984  79999999998899999999999999999999999


Q ss_pred             HHHHhccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCC-
Q 012352          327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-  405 (465)
Q Consensus       327 ~~A~~~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~-  405 (465)
                      +.|+.+||||||+++  +|+|+||||||.||+++|++.           +.++++|+++|+|+||+|||++++|+.+|+ 
T Consensus        83 ~~A~~iGAVNTv~~~--~g~l~G~NTD~~Gf~~~l~~~-----------~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~  149 (288)
T PRK12749         83 PAAKLVGAINTIVND--DGYLRGYNTDGTGHIRAIKES-----------GFDIKGKTMVLLGAGGASTAIGAQGAIEGLK  149 (288)
T ss_pred             HHHHHhCceeEEEcc--CCEEEEEecCHHHHHHHHHhc-----------CCCcCCCEEEEECCcHHHHHHHHHHHHCCCC
Confidence            999999999999876  899999999999999999753           245678999999999999999999999998 


Q ss_pred             eEEEEECC---HHHHHHHHHHHCCc------ccchhc---ccccCCCCeeEEEecCCCCCCCCCCCCCC
Q 012352          406 RVVIANRT---YDRARELAETVGGH------ALSLAD---LENFNPEDGMILANTTSIGMQPKVDETPI  462 (465)
Q Consensus       406 ~v~i~~R~---~~~a~~la~~~~~~------~~~~~~---l~~~~~~~~DilInaT~~gm~~~~~~~p~  462 (465)
                      +|+|+||+   .+++++++++++..      ..++++   +.+ ...++|+||||||+||.|..+..|+
T Consensus       150 ~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~-~~~~aDivINaTp~Gm~~~~~~~~~  217 (288)
T PRK12749        150 EIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAE-ALASADILTNGTKVGMKPLENESLV  217 (288)
T ss_pred             EEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhh-hcccCCEEEECCCCCCCCCCCCCCC
Confidence            99999999   46999999988532      122221   112 3457899999999999986555443

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=100.00  E-value=6.8e-48  Score=382.51  Aligned_cols=199  Identities=29%  Similarity=0.425  Sum_probs=174.4

Q ss_pred             CCCcceeeecCCCccccccHHHHHHHHHHcCCCeeEecccc-------ccHHHHHHHhhcCCCCeeEeccCchHHHhhhc
Q 012352          250 GPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV-------DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCC  322 (465)
Q Consensus       250 ~~~~~~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~-------~~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~  322 (465)
                      +..+++|+|||+||+||+||.|||++|+++|+|+.|.++++       +++.++++.++.++|.|+|||||||++|++++
T Consensus         2 ~~~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~~   81 (284)
T PRK12549          2 SRPSFLAGLIGAGIQASLSPAMHEAEGDAQGLRYVYRLIDLDALGLTADALPELLDAAERMGFAGLNITHPCKQAVIPHL   81 (284)
T ss_pred             CccceEEEEECCCcccccCHHHHHHHHHHcCCCeEEEEEeeccccCCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHh
Confidence            44678999999999999999999999999999999999986       37899999999999999999999999999999


Q ss_pred             cccCHHHHhccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHH
Q 012352          323 DEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKA  402 (465)
Q Consensus       323 d~~~~~A~~~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~  402 (465)
                      |++++.|+.+||||||+++  +|+|+||||||.||+++|++..           ..+.+|+|+|+|+||+|++++++|..
T Consensus        82 D~~~~~A~~iGAvNTv~~~--~g~l~G~NTD~~G~~~~l~~~~-----------~~~~~k~vlIlGaGGaaraia~aL~~  148 (284)
T PRK12549         82 DELSDDARALGAVNTVVFR--DGRRIGHNTDWSGFAESFRRGL-----------PDASLERVVQLGAGGAGAAVAHALLT  148 (284)
T ss_pred             ccCCHHHHHhCCceEEEec--CCEEEEEcCCHHHHHHHHHhhc-----------cCccCCEEEEECCcHHHHHHHHHHHH
Confidence            9999999999999999886  8999999999999999997632           24567999999999999999999999


Q ss_pred             CCC-eEEEEECCHHHHHHHHHHHCCc-----ccchhcccccCCCCeeEEEecCCCCCCCCCCCCCCC
Q 012352          403 KGA-RVVIANRTYDRARELAETVGGH-----ALSLADLENFNPEDGMILANTTSIGMQPKVDETPIP  463 (465)
Q Consensus       403 ~G~-~v~i~~R~~~~a~~la~~~~~~-----~~~~~~l~~~~~~~~DilInaT~~gm~~~~~~~p~~  463 (465)
                      .|+ +|+|+||+.++++++++++...     ...++++.+ .+.++|+||||||+||.+. +..|++
T Consensus       149 ~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~-~~~~aDiVInaTp~Gm~~~-~~~~~~  213 (284)
T PRK12549        149 LGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAA-ALAAADGLVHATPTGMAKH-PGLPLP  213 (284)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHh-hhCCCCEEEECCcCCCCCC-CCCCCC
Confidence            998 8999999999999999887421     122333333 3567899999999999875 345654

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=100.00  E-value=3.2e-47  Score=379.04  Aligned_cols=201  Identities=34%  Similarity=0.543  Sum_probs=176.0

Q ss_pred             ccCCCcceeeecCCCccccccHHHHHHHHHHcCCCeeEeccccc--cHHHHHHHhhcCCCCeeEeccCchHHHhhhcccc
Q 012352          248 QMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEV  325 (465)
Q Consensus       248 ~~~~~~~~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~  325 (465)
                      .++..|++|+|||+||+||+||.|||++|+++|+|+.|.+++++  ++.++++.++.++|.|+|||||||++|++++|++
T Consensus         4 ~~~~~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~ld~~   83 (289)
T PRK12548          4 RISGTTGLLGLIGSPVGHSGSPAMYNYSFQKAGLDYAYLAFDIPVDKVPDAIKAIKTFNMRGANVTMPCKSEAAKYMDEL   83 (289)
T ss_pred             ccCCceeEEEEEcCCcccccCHHHHHHHHHHcCCCEEEEEEecCHHHHHHHHHHHHHCCCCEEEECccCHHHHHHHhhcC
Confidence            35667889999999999999999999999999999999999984  7999999999899999999999999999999999


Q ss_pred             CHHHHhccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCC
Q 012352          326 DTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA  405 (465)
Q Consensus       326 ~~~A~~~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~  405 (465)
                      ++.|+.+||||||+++  +|+|+||||||.||+.+|++..           ..+++|+++|+|+||+|++++++|+..|+
T Consensus        84 ~~~A~~iGavNTi~~~--~g~l~G~NTD~~G~~~~l~~~~-----------~~~~~k~vlI~GAGGagrAia~~La~~G~  150 (289)
T PRK12548         84 SPAARIIGAVNTIVND--DGKLTGHITDGLGFVRNLREHG-----------VDVKGKKLTVIGAGGAATAIQVQCALDGA  150 (289)
T ss_pred             CHHHHHhCceeEEEeE--CCEEEEEecCHHHHHHHHHhcC-----------CCcCCCEEEEECCcHHHHHHHHHHHHCCC
Confidence            9999999999999887  8999999999999999997632           34678999999999999999999999999


Q ss_pred             -eEEEEECCH---HHHHHHHHHHCCc-----c--cchhc---ccccCCCCeeEEEecCCCCCCCCCCCCCC
Q 012352          406 -RVVIANRTY---DRARELAETVGGH-----A--LSLAD---LENFNPEDGMILANTTSIGMQPKVDETPI  462 (465)
Q Consensus       406 -~v~i~~R~~---~~a~~la~~~~~~-----~--~~~~~---l~~~~~~~~DilInaT~~gm~~~~~~~p~  462 (465)
                       +|+|+||+.   ++++++++++...     .  .++++   +.+ .+..+|+||||||+||.|..+.+|+
T Consensus       151 ~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~-~~~~~DilINaTp~Gm~~~~~~~~~  220 (289)
T PRK12548        151 KEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKA-EIASSDILVNATLVGMKPNDGETNI  220 (289)
T ss_pred             CEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHh-hhccCCEEEEeCCCCCCCCCCCCCC
Confidence             699999997   7899988877421     1  23332   222 3456799999999999987777777

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=100.00  E-value=1.2e-46  Score=373.04  Aligned_cols=201  Identities=37%  Similarity=0.627  Sum_probs=176.6

Q ss_pred             CCCcceeeecCCCccccccHHHHHHHHHHcCCCeeEecccc--ccHHHHHHHhhcCCCCeeEeccCchHHHhhhccccCH
Q 012352          250 GPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDT  327 (465)
Q Consensus       250 ~~~~~~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~~~  327 (465)
                      +.+|++|+|||+||+||+||.|||++|+++|+|+.|.++++  +++.++++.++.++|.|+|||||||++|++++|++++
T Consensus         2 ~~~~~~~~viG~pi~hS~SP~~hn~~~~~~gl~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~   81 (278)
T PRK00258          2 TGKTRLYAVIGNPIAHSKSPLIHNAAFKQLGLDGVYLAILVPPEDLEDAVKGFFALGGRGANVTVPFKEAAFALADELSE   81 (278)
T ss_pred             CCceeEEEEECCchhcccCHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHHhCCCCEEEECcCCHHHHHHHhhcCCH
Confidence            46789999999999999999999999999999999999999  5899999999988999999999999999999999999


Q ss_pred             HHHhccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCC-e
Q 012352          328 VAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-R  406 (465)
Q Consensus       328 ~A~~~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~  406 (465)
                      .|+.+||||||+++  +|+|+||||||.||++++++..          +.++.+|+|+|+|+||+|++++++|+.+|+ +
T Consensus        82 ~A~~igavNtv~~~--~g~l~G~NTD~~G~~~~l~~~~----------~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~  149 (278)
T PRK00258         82 RARLIGAVNTLVLE--DGRLIGDNTDGIGFVRALEERL----------GVDLKGKRILILGAGGAARAVILPLLDLGVAE  149 (278)
T ss_pred             HHHHhCCceEEEee--CCEEEEEcccHHHHHHHHHhcc----------CCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCE
Confidence            99999999999976  8999999999999999997532          145778999999999999999999999996 9


Q ss_pred             EEEEECCHHHHHHHHHHHCCcc-cch-hcccccCCCCeeEEEecCCCCCCCCCCCCCCC
Q 012352          407 VVIANRTYDRARELAETVGGHA-LSL-ADLENFNPEDGMILANTTSIGMQPKVDETPIP  463 (465)
Q Consensus       407 v~i~~R~~~~a~~la~~~~~~~-~~~-~~l~~~~~~~~DilInaT~~gm~~~~~~~p~~  463 (465)
                      |+|+||+.+++++++++++... +.+ .+..+ .+.++|+||||||.||.+..+.+|++
T Consensus       150 V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~-~~~~~DivInaTp~g~~~~~~~~~~~  207 (278)
T PRK00258        150 ITIVNRTVERAEELAKLFGALGKAELDLELQE-ELADFDLIINATSAGMSGELPLPPLP  207 (278)
T ss_pred             EEEEeCCHHHHHHHHHHhhhccceeecccchh-ccccCCEEEECCcCCCCCCCCCCCCC
Confidence            9999999999999998886321 222 12223 45679999999999998765555654

>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=2.2e-46  Score=358.21  Aligned_cols=215  Identities=20%  Similarity=0.291  Sum_probs=180.9

Q ss_pred             cccccc--cccCCCCCCcEEEEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCch--hHHHHHHhhCCCcEEEEe
Q 012352            9 ASGSKL--VSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR--ENIKTLIKESPVPTLFTY   84 (465)
Q Consensus         9 ~~~~~~--~~~~~~~~~~~icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~--~~l~~l~~~~~~PiI~T~   84 (465)
                      -||-|+  .+-+++..+|+|||||+++|.+|++++++.+...++|+||||+|+|.+.+..  ..+...++..+.|+|||+
T Consensus         4 ~~~~~~~v~~~~~g~~~p~Icvpi~~~~~ee~~~~~~~~~~~~aDivE~RlD~l~~~~~~~~~~~~~~l~~~~~p~I~T~   83 (229)
T PRK01261          4 YSGDKISIGKFVIGNMQPIVVESIFFKDIKEMKERFKTKVLSDKNLYEIRFDLFHDHSIESEPEIISALNEMDIDYIFTY   83 (229)
T ss_pred             ccCCeEEEeCeEeCCCCcEEEEEeCCCCHHHHHHHHHHhhcCCCCEEEEEeeccCCCChHHHHHHHHHHhhcCCCEEEEE
Confidence            356554  6889999999999999999999999999988778999999999999875442  222233344589999999


Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEeeccccchhHHHHhcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHH
Q 012352           85 RPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQA  164 (465)
Q Consensus        85 R~~~eGG~~~~~~~~~~~~l~~~~~~~~~~iDiEl~~~~~~~~~l~~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~  164 (465)
                      |+.        ++   .++++.+++.++||||||++...++    . .+..++++|+|||    ||+.++|.+++++|.+
T Consensus        84 R~~--------~~---~~~l~~a~~~~~d~vDIEl~~~~~~----~-~~~~~~kvIvS~H----tp~~eeL~~~l~~m~~  143 (229)
T PRK01261         84 RGV--------DA---RKYYETAIDKMPPAVDLDINLIGKL----E-FRPRNTMLMVSYH----TNNSDNMPAILDIMNE  143 (229)
T ss_pred             cCC--------CH---HHHHHHHHhhCCCEEEEEcccchhh----h-hhcCCCeEEEEeC----CCCHHHHHHHHHHHHH
Confidence            942        21   3678888887799999999873332    1 2357999999999    7889999999999999


Q ss_pred             cCCCEEEEEeecCCHHHHHHHHHH----hccCCCCEEEEecCccchhhhhhccccCCccccccccCccCCCCCCCChhhH
Q 012352          165 SGADIVKFATTALDITDVARVFQI----TVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL  240 (465)
Q Consensus       165 ~gadivKia~~~~~~~D~~~ll~~----~~~~~~p~i~~~MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApGQ~~~~~l  240 (465)
                      +||||+|+|+||++.+|+++++..    ..+.+.|+|+||||+  ++||+++++|||++||++++++  +||||+++++|
T Consensus       144 ~gaDI~KiAvmp~~~~Dvl~~l~~~~~~~~~~~~p~i~isMG~--~iSRi~~~~fGS~lTyas~~~~--sAPGQi~v~~l  219 (229)
T PRK01261        144 KNPDYVKVACNYNDNKKFVDDLQYILMKKDEKYKPIVFIPMGR--EFLRIFSGYYVSDIVYARYDNE--TAPGQPKRDYY  219 (229)
T ss_pred             hCCCEEEEEeCCCChHHHHHHHHHHHHHHhcCCCCEEEEECCc--HHHHHHHHHHCCceEEeeCCCC--CCCCCCCHHHH
Confidence            999999999999999998877753    234578999999999  9999999999999999999975  99999999999


Q ss_pred             Hhhhccc
Q 012352          241 LDLYNFR  247 (465)
Q Consensus       241 ~~~~~~~  247 (465)
                      +++++..
T Consensus       220 ~~~~~~~  226 (229)
T PRK01261        220 ESAFIKY  226 (229)
T ss_pred             HHHHHHh
Confidence            9999864

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=100.00  E-value=2.1e-45  Score=361.56  Aligned_cols=194  Identities=27%  Similarity=0.419  Sum_probs=168.7

Q ss_pred             ccCCCcce-eeecCCCccccccHHHHHHHHHHcCCCeeEeccccccHHHHHHHhhcCCCCeeEeccCchHHHhhhccccC
Q 012352          248 QMGPDTKV-FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD  326 (465)
Q Consensus       248 ~~~~~~~~-~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~~  326 (465)
                      +++++|++ |+|||+|  ||+||.|||++|+++|+|+.|.+++.++++++++.++.++|.|+|||||||++|++++|+++
T Consensus         4 ~~~~~~~~~~gliG~P--~~~Sp~ihn~~f~~~gl~~~Y~~~~~~~l~~~~~~l~~~~~~G~nVT~P~K~~~~~~lD~l~   81 (272)
T PRK12550          4 MINKDTQLCISLAARP--SNFGTRFHNYLYEALGLNFLYKAFTTTDLTAAIGGVRALGIRGCAVSMPFKEAVIPLVDELD   81 (272)
T ss_pred             cCCCCceEEEEEEccc--hhcCHHHHHHHHHHcCCCcEEEecCHhHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhcCC
Confidence            45677885 9999999  77789999999999999999999998899999999999999999999999999999999999


Q ss_pred             HHHHhccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCC-
Q 012352          327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-  405 (465)
Q Consensus       327 ~~A~~~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~-  405 (465)
                      +.|+.+||||||+++  +|+|+||||||.||+++|++. .          .. .+++++|+|+||+|||++++|+++|+ 
T Consensus        82 ~~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~-~----------~~-~~~~vlilGaGGaarAi~~aL~~~g~~  147 (272)
T PRK12550         82 PSAQAIESVNTIVNT--DGHLKAYNTDYIAIAKLLASY-Q----------VP-PDLVVALRGSGGMAKAVAAALRDAGFT  147 (272)
T ss_pred             HHHHHhCCeeEEEee--CCEEEEEecCHHHHHHHHHhc-C----------CC-CCCeEEEECCcHHHHHHHHHHHHCCCC
Confidence            999999999999887  899999999999999999763 1          22 25789999999999999999999998 


Q ss_pred             eEEEEECCHHHHHHHHHHHCCcccchh-cccccCCCCeeEEEecCCCCCCCCC--CCCCCC
Q 012352          406 RVVIANRTYDRARELAETVGGHALSLA-DLENFNPEDGMILANTTSIGMQPKV--DETPIP  463 (465)
Q Consensus       406 ~v~i~~R~~~~a~~la~~~~~~~~~~~-~l~~~~~~~~DilInaT~~gm~~~~--~~~p~~  463 (465)
                      +|+|+||+.++++++++.++.   ++. ++   ....+|+||||||+||.+..  +.+|++
T Consensus       148 ~i~i~nR~~~~a~~la~~~~~---~~~~~~---~~~~~dlvINaTp~Gm~~~~~~~~~pi~  202 (272)
T PRK12550        148 DGTIVARNEKTGKALAELYGY---EWRPDL---GGIEADILVNVTPIGMAGGPEADKLAFP  202 (272)
T ss_pred             EEEEEeCCHHHHHHHHHHhCC---cchhhc---ccccCCEEEECCccccCCCCccccCCCC
Confidence            899999999999999988742   221 11   12458999999999998654  234554

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=100.00  E-value=3.5e-45  Score=363.02  Aligned_cols=192  Identities=29%  Similarity=0.391  Sum_probs=165.8

Q ss_pred             CcceeeecCCCccccccHHHHHHHHHHcCCCeeEeccccc---cHHHHHHHhhcCCCCeeEeccCchHHHhhhccccCHH
Q 012352          252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD---DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTV  328 (465)
Q Consensus       252 ~~~~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~---~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~~~~  328 (465)
                      .+++|++||+||+||+||.|||++|+++|+|+.|.++++.   ++.++++.+ ..+|.|+|||||||+++++++|++++.
T Consensus         4 ~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~~~~l~~~~~~~-~~~~~G~nVT~P~K~~~~~~~d~~~~~   82 (282)
T TIGR01809         4 GPKKAFIIGKPIAHSRSPHLHNAGYEILGLPDKTYEFETCSAEELKEVLSGF-GPQFGGASVTIPLKFAILRFADEHTDR   82 (282)
T ss_pred             CCeEEEEEcCCchhccCHHHHHHHHHHcCCCcEEEeeecCCHHHHHHHHHhc-CCCCcEEEECCCCHHHHHHHhhcCCHH
Confidence            3678999999999999999999999999999999999873   688888877 459999999999999999999999999


Q ss_pred             HHhccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCC-eE
Q 012352          329 AKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RV  407 (465)
Q Consensus       329 A~~~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v  407 (465)
                      |+.+||||||+++. +|+|+||||||.||+.+|++...         ..++++|+|+|+|+||+||+++++|.++|+ +|
T Consensus        83 A~~iGAVNTv~~~~-~g~l~G~NTD~~G~~~~l~~~~~---------~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~i  152 (282)
T TIGR01809        83 ASLIGSVNTLLRTQ-NGIWKGDNTDWDGIAGALANIGK---------FEPLAGFRGLVIGAGGTSRAAVYALASLGVTDI  152 (282)
T ss_pred             HHHhCceeEEEEcC-CCcEEEecCCHHHHHHHHHhhCC---------ccccCCceEEEEcCcHHHHHHHHHHHHcCCCeE
Confidence            99999999999853 88999999999999999976310         014678999999999999999999999998 89


Q ss_pred             EEEECCHHHHHHHHHHHCCc--ccch---hcccccCCCCeeEEEecCCCCCCC
Q 012352          408 VIANRTYDRARELAETVGGH--ALSL---ADLENFNPEDGMILANTTSIGMQP  455 (465)
Q Consensus       408 ~i~~R~~~~a~~la~~~~~~--~~~~---~~l~~~~~~~~DilInaT~~gm~~  455 (465)
                      +|+||+.+++++++++++..  ...+   +++.. .+.++|+||||||+||..
T Consensus       153 ~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~-~~~~~DiVInaTp~g~~~  204 (282)
T TIGR01809       153 TVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLA-IEKAAEVLVSTVPADVPA  204 (282)
T ss_pred             EEEeCCHHHHHHHHHHhhhcCcceeccchhhhhh-cccCCCEEEECCCCCCCC
Confidence            99999999999999988532  1112   23323 346799999999999953

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=100.00  E-value=3.1e-44  Score=354.55  Aligned_cols=193  Identities=39%  Similarity=0.625  Sum_probs=169.9

Q ss_pred             ceeeecCCCccccccHHHHHHHHHHcCCCeeEeccccc--cHHHHHHHhhcCCCCeeEeccCchHHHhhhccccCHHHHh
Q 012352          254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKS  331 (465)
Q Consensus       254 ~~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~~~~A~~  331 (465)
                      ++|||+|+||+||+||.|||++|+++|+|+.|.+++++  +++++++.++.++|.|+|||||||+++++++|++++.|+.
T Consensus         1 ~~~~viG~pi~hS~SP~~hn~~~~~~g~~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~~A~~   80 (270)
T TIGR00507         1 KLYGVIGNPIAHSKSPLIHNAFFKQLGLEGPYIAFLVPPDDLEDALSGFFALGFKGANVTSPFKEEAFQFLDEIDERAKL   80 (270)
T ss_pred             CEEEEECCccccccCHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhhCCHHHHH
Confidence            47999999999999999999999999999999999984  7999999999899999999999999999999999999999


Q ss_pred             ccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEE
Q 012352          332 IGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIAN  411 (465)
Q Consensus       332 ~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~  411 (465)
                      +||||||+++  +|+|+||||||.||+++|++..           ...++|+++|+|+||+|++++++|++.|++|++++
T Consensus        81 ~gavNti~~~--~g~l~g~NTD~~G~~~~l~~~~-----------~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~  147 (270)
T TIGR00507        81 AGAVNTLKLE--DGKLVGYNTDGIGLVSDLERLI-----------PLRPNQRVLIIGAGGAARAVALPLLKADCNVIIAN  147 (270)
T ss_pred             hCCceEEEee--CCEEEEEcCCHHHHHHHHHhcC-----------CCccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEe
Confidence            9999999977  8999999999999999997621           23567899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHCCc----ccchhcccccCCCCeeEEEecCCCCCCCCCCCCCC
Q 012352          412 RTYDRARELAETVGGH----ALSLADLENFNPEDGMILANTTSIGMQPKVDETPI  462 (465)
Q Consensus       412 R~~~~a~~la~~~~~~----~~~~~~l~~~~~~~~DilInaT~~gm~~~~~~~p~  462 (465)
                      |+.+++++++++++..    ..++++.   ...++|+||||||.||.+..++.|+
T Consensus       148 R~~~~~~~la~~~~~~~~~~~~~~~~~---~~~~~DivInatp~gm~~~~~~~~~  199 (270)
T TIGR00507       148 RTVSKAEELAERFQRYGEIQAFSMDEL---PLHRVDLIINATSAGMSGNIDEPPV  199 (270)
T ss_pred             CCHHHHHHHHHHHhhcCceEEechhhh---cccCccEEEECCCCCCCCCCCCCCC
Confidence            9999999999887531    1122221   2346899999999999876655565

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]

Probab=99.95  E-value=3.5e-31  Score=267.25  Aligned_cols=399  Identities=17%  Similarity=0.078  Sum_probs=316.8

Q ss_pred             cccCCCCCCcEEEEeeccCCHHHHHHHHH----hhhhcCCCEEEEEecCCCCCC-chhHHHHHHhhCCCcEEEEeccCCC
Q 012352           15 VSGGMRKNPTLICVPIMGESVDKMVVDMG----KANASGADLVEIRLDGLKNFN-PRENIKTLIKESPVPTLFTYRPIWE   89 (465)
Q Consensus        15 ~~~~~~~~~~~icv~l~~~t~~e~~~~~~----~~~~~~~D~vElRlD~l~~~~-~~~~l~~l~~~~~~PiI~T~R~~~e   89 (465)
                      .+-+++++.-.+|    .+++.+++..+.    +..+.+++++|.|.|.+..++ +.+.....+....+|.|++.|.+||
T Consensus        86 ~~~taeKas~iV~----~pdir~i~~~i~~pgSKs~snralllaa~~eg~~~~~n~L~sddt~~m~sal~~L~~~~~~we  161 (595)
T KOG0692|consen   86 SVSTAEKASEIVL----QPDIREISGLIKLPGSKSLSNRALLLAALSEGTTVVDNLLNSDDTNYMLSALKTLGLNVETWE  161 (595)
T ss_pred             cchhhhhcchhhc----ChhHHHhhceeeCCCCchhhhhHHHHHHHhccceeccccccccchhhhhhhHHHhccccceec
Confidence            3456667777777    444444443222    223456777777777666554 2222333334467899999999999


Q ss_pred             CCC---CCCCHHHHHHHHHHHHHhCCcEEEEeeccccchhHHHHhcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcC
Q 012352           90 GGQ---YDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASG  166 (465)
Q Consensus        90 GG~---~~~~~~~~~~~l~~~~~~~~~~iDiEl~~~~~~~~~l~~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~g  166 (465)
                      +|.   .++...++-..++..++++.+|+|.|++..-++...+-+...+.-.||.+.|..+.+|    +-.....+++.|
T Consensus       162 ~~~~~vveG~gg~~~~~~~~~~eLylgnagta~r~lt~~aa~v~~k~~~k~~Vl~g~hrmq~rP----i~~LV~~l~q~G  237 (595)
T KOG0692|consen  162 ENNRAVVEGCGGEFSIDSKSDIELYLGNAGTAMRPLTEFAAAVTAKGGNKSYVLDGVHRMQERP----IGDLVVGLKQLG  237 (595)
T ss_pred             CCCEEEEEcCCCeeeechhhhhhhccCccchhhhhHHHHHHHhhcCCCCceEEEecCcccccCC----chHHHHHHHhcC
Confidence            998   6777666655677778889999999999877777666555445558999999999999    555567777889


Q ss_pred             CCEEEEEeecCCHHHHHHHHHHhccCCCCEEEEecCccchhhhhhccccCCccccccccCccCCCCCCCChhhHHhhh--
Q 012352          167 ADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLY--  244 (465)
Q Consensus       167 adivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApGQ~~~~~l~~~~--  244 (465)
                      |||.|++.+...+-|+. ....++..++|+++.-||+.+..+|+++|.++.++||..++..+-|+|+|.....|.+.|  
T Consensus       238 adI~~~~~t~~~p~dv~-~~~~~~gg~v~l~g~Vssqy~~~~lm~ap~a~g~vt~~~vdgk~iS~pyv~mt~~lme~fgv  316 (595)
T KOG0692|consen  238 ADIECTLGTNCPPVDVN-ANGGLPGGKVKLSGSVSSQYLTALLMCAPLALGDVTIEIVDGKLISVPYVEMTLKLMERFGV  316 (595)
T ss_pred             CceEEeccCCCCceeee-ccCCCcCceeeeeeeehhhHHHHHHHhhhhcCCceEEEeecCccccccchhHHHHHHHHhCc
Confidence            99999999999999997 555666678999999999999999999999999999999996678999999999999999  


Q ss_pred             cccccCCCcceeeecCCCccccccHHHHHHHHHHcCCCeeEeccccccHHHHHHHhhcCCCCeeE-eccCchHHHhhhcc
Q 012352          245 NFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS-CTIPHKEAAVKCCD  323 (465)
Q Consensus       245 ~~~~~~~~~~~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~~l~~~~~~l~~~~~~G~~-vT~P~K~~v~~~~d  323 (465)
                      ++....+.++.|++.|.|..|+.+|.+||.+|.+--.++.|....++..-+++..-...++.||+ |+.|+|..+...++
T Consensus       317 n~~~s~~~~~~y~i~g~~y~~p~~~~ve~dAssa~yfla~aa~tg~~~tV~~~g~~Slqgda~Fa~vl~pmgc~v~qt~~  396 (595)
T KOG0692|consen  317 NVEHSTSWDRFYVIGGQKYKSPGNAYVEGDASSASYFLAGAAITGETVTVEGCGTTSLQGDAKFAEVLEPMGCKVSQTEN  396 (595)
T ss_pred             CeEecCCCcceEeccCcccCCCCCceeecccccccccceeeeEecceeeeccccceecccccchHhhhccccceeeeecc
Confidence            78888999999999999999999999999999999999888877766555555555567899999 99999999999999


Q ss_pred             ccCHHHHhccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCC---cccccCCcEEEEEccchhHHHHHHHH
Q 012352          324 EVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGG---VSSALAGKLFVVIGAGGAGKALAYGA  400 (465)
Q Consensus       324 ~~~~~A~~~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~---~~~~l~~k~vlV~GaGg~g~ai~~~L  400 (465)
                      +.+..+.-.||+|+..++.-|+...++|+|..+.+.+++..++..++ |..   .......+...|+|.++.+++..+..
T Consensus       397 svtv~gp~~ga~~~~~lr~iD~m~~m~d~~~t~svvA~~~~~~s~gd-ptti~~~as~rvket~r~ia~~~el~klg~~~  475 (595)
T KOG0692|consen  397 SVTVTGPPRGAFGMRHLRAIDVMNKMPDVAMTLSVVALFAGLRSSGD-PTTIRDVASWRVKETERMIAICTELRKLGATV  475 (595)
T ss_pred             cccccCCCCCcccceehhhhcccccccchhHhHhHHHHhhcccCCCC-CcccccccchhHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999998755788999999999999998876543221 110   01112335677889999999999888


Q ss_pred             HHCCCeEEEEECCHHHHHHHHHHH
Q 012352          401 KAKGARVVIANRTYDRARELAETV  424 (465)
Q Consensus       401 ~~~G~~v~i~~R~~~~a~~la~~~  424 (465)
                      .+.+..++|.+|+ +|.-++++..
T Consensus       476 ~E~~dg~~v~~~~-~k~lk~ae~~  498 (595)
T KOG0692|consen  476 EEGSDGYCVITPP-EKKLKLAEID  498 (595)
T ss_pred             cccCceEEEeCCc-hHhccchhhc
Confidence            8888889999999 7777777654

>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []

Probab=99.93  E-value=1.3e-26  Score=188.40  Aligned_cols=81  Identities=41%  Similarity=0.806  Sum_probs=75.1

Q ss_pred             ecCCCccccccHHHHHHHHHHcCCCeeEeccccc--cHHHHHHHhhcCCCCeeEeccCchHHHhhhccccCHHHHhccce
Q 012352          258 IIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAV  335 (465)
Q Consensus       258 ~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~~~~A~~~gav  335 (465)
                      |+|+|++||+||.|||++|+++|+|+.|.+++++  +++++++.++..+|.|+|||||||+++++++|++++.|+.+|||
T Consensus         1 viG~pi~hS~SP~~hn~~f~~~g~~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~~VT~P~K~~~~~~~D~~~~~A~~igAv   80 (83)
T PF08501_consen    1 VIGNPISHSLSPLIHNAAFEALGLDAVYIPFEVEPEDLEDFLDALRAPNFRGLNVTMPHKEAAIPYLDELSPSAKAIGAV   80 (83)
T ss_dssp             EEESSSTT-SHHHHHHHHHHHTTSSEEEEEEETSTTCHHHHHHHHHHTTESEEEE-TTSTTHHGGGSSEE-HHHHHHTS-
T ss_pred             CcCCCcccccCHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHhcCCCCeeeecchHHHHHHHHhccCCHHHHHhCCc
Confidence            6899999999999999999999999999999996  99999999999999999999999999999999999999999999


Q ss_pred             eeE
Q 012352          336 NCI  338 (465)
Q Consensus       336 Ntv  338 (465)
                      |||
T Consensus        81 Ntv   83 (83)
T PF08501_consen   81 NTV   83 (83)
T ss_dssp             SEE
T ss_pred             ccC
Confidence            997

Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.82  E-value=9.8e-20  Score=180.24  Aligned_cols=160  Identities=23%  Similarity=0.361  Sum_probs=131.7

Q ss_pred             eeecCCCccccccHHHHHHHHHHcCCCeeEecc--cc--ccHHHHHHHhhcC-CCCeeEeccCchHHHhh--hccccCHH
Q 012352          256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHL--LV--DDIAKFFQTYSSN-DFAGFSCTIPHKEAAVK--CCDEVDTV  328 (465)
Q Consensus       256 ~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~--~~--~~l~~~~~~l~~~-~~~G~~vT~P~K~~v~~--~~d~~~~~  328 (465)
                      .-++|+.-+.-.--.+|+++|+++|+++.|.++  ++  +++.+.++.++.. ++.|++||+|||+.+.+  ++|.+ +.
T Consensus        38 ~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I-~~  116 (283)
T PRK14192         38 TILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAI-SL  116 (283)
T ss_pred             EEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhcc-CH
Confidence            445564433333447999999999999999999  55  3788888888644 89999999999999999  99999 88


Q ss_pred             HHhccceeeEEEeccCCe------EEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccch-hHHHHHHHHH
Q 012352          329 AKSIGAVNCIIRRQSDGK------LFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAK  401 (465)
Q Consensus       329 A~~~gavNtv~~~~~~g~------l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg-~g~ai~~~L~  401 (465)
                      ++.++++||+ +   .|+      ++|+||| .|+++.|+..           +.+++||+|+|+|+|| +|++++..|.
T Consensus       117 aKDVdg~n~~-n---~G~l~~~~~~~~p~T~-~gii~~L~~~-----------~i~l~Gk~vvViG~gg~vGkpia~~L~  180 (283)
T PRK14192        117 AKDVDGVTCL-G---FGRMAMGEAAYGSATP-AGIMRLLKAY-----------NIELAGKHAVVVGRSAILGKPMAMMLL  180 (283)
T ss_pred             HHhcCCCCcc-c---cCccccCCCcccCCcH-HHHHHHHHHc-----------CCCCCCCEEEEECCcHHHHHHHHHHHH
Confidence            9999999999 3   466      8999999 9999999863           2578999999999999 9999999999


Q ss_pred             HCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCC
Q 012352          402 AKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       402 ~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~  450 (465)
                      +.|+.|++++|.   ++.+++.               ..++|+||||||
T Consensus       181 ~~gatVtv~~~~---t~~L~~~---------------~~~aDIvI~AtG  211 (283)
T PRK14192        181 NANATVTICHSR---TQNLPEL---------------VKQADIIVGAVG  211 (283)
T ss_pred             hCCCEEEEEeCC---chhHHHH---------------hccCCEEEEccC
Confidence            999999999984   3444432               235688888874

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=99.43  E-value=2.4e-13  Score=120.62  Aligned_cols=78  Identities=46%  Similarity=0.635  Sum_probs=67.1

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCc---ccchhcccccCCCCeeEEEecCCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGH---ALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~---~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      .++++++++|+|+||+|++++++|...|+ +|+|+||+.++++++++.++..   ..+++++.+ .+.++|+||||||++
T Consensus         8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~-~~~~~DivI~aT~~~   86 (135)
T PF01488_consen    8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEE-ALQEADIVINATPSG   86 (135)
T ss_dssp             STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCH-HHHTESEEEE-SSTT
T ss_pred             CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHH-HHhhCCeEEEecCCC
Confidence            46889999999999999999999999999 7999999999999999999533   456777664 456899999999999


Q ss_pred             CCC
Q 012352          453 MQP  455 (465)
Q Consensus       453 m~~  455 (465)
                      |++
T Consensus        87 ~~~   89 (135)
T PF01488_consen   87 MPI   89 (135)
T ss_dssp             STS
T ss_pred             Ccc
Confidence            973

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=99.12  E-value=5.4e-11  Score=124.12  Aligned_cols=130  Identities=18%  Similarity=0.219  Sum_probs=98.0

Q ss_pred             cCchHHHhhhccccCHHHHhccceeeEEEec-----cCCeEEEEecc------HHHHH--HHHHhhhccCCCCCCCcccc
Q 012352          312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ-----SDGKLFGYNTD------YVGAI--SAIEDGLRGRLNVSGGVSSA  378 (465)
Q Consensus       312 ~P~K~~v~~~~d~~~~~A~~~gavNtv~~~~-----~~g~l~G~NTD------~~G~~--~~l~~~~~~~~~~~~~~~~~  378 (465)
                      +-...+|+.|+++....|+..|+++.++.+.     ..||-+-..|.      -.+.+  ...++.           ..+
T Consensus       110 VlGE~QIlgQVK~A~~~A~~~g~~g~~L~~lf~~A~~~aKrVrteT~I~~~~vSv~~~Av~la~~~-----------~~~  178 (414)
T PRK13940        110 VLGEPQILGQVKDSYTLSKKNHAIGKELDRVFQKVFATAKRVRSETRIGHCPVSVAFSAITLAKRQ-----------LDN  178 (414)
T ss_pred             hcCcHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHH-----------hcC
Confidence            4467899999999999999999999887552     11222111221      12211  112222           235


Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHC-CcccchhcccccCCCCeeEEEecCCCCC
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVG-GHALSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~-~~~~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      +.+++++|+|+||+|++++.+|...|+ +|+|+||+.+++++++++++ ....+++++.+ .+.++|+|||||+...
T Consensus       179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~-~l~~aDiVI~aT~a~~  254 (414)
T PRK13940        179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQ-LIKKADIIIAAVNVLE  254 (414)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHH-HhccCCEEEECcCCCC
Confidence            789999999999999999999999998 89999999999999999997 45567777765 5778999999998764

>PRK08291 ectoine utilization protein EutC; Validated

Probab=99.10  E-value=1.6e-10  Score=117.54  Aligned_cols=107  Identities=21%  Similarity=0.212  Sum_probs=84.3

Q ss_pred             HhccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHH-CCC-eE
Q 012352          330 KSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKA-KGA-RV  407 (465)
Q Consensus       330 ~~~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~-~G~-~v  407 (465)
                      ...|++|+++.+  ++.|.|+|||+.|++.+..  +.           ....++++|+|+|+.|++.+.++.. .++ +|
T Consensus        96 ~~tG~~~ai~~d--~~~lt~~rT~a~~~~a~~~--la-----------~~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V  160 (330)
T PRK08291         96 ARTGLVEALLLD--NGYLTDVRTAAAGAVAARH--LA-----------REDASRAAVIGAGEQARLQLEALTLVRPIREV  160 (330)
T ss_pred             CCCCceEEEEcC--CchHHHHHHHHHHHHHHHH--hC-----------CCCCCEEEEECCCHHHHHHHHHHHhcCCCCEE
Confidence            356999999765  7889999999999999864  21           1235789999999999999999985 566 89


Q ss_pred             EEEECCHHHHHHHHHHHCC----cccchhcccccCCCCeeEEEecCCCC
Q 012352          408 VIANRTYDRARELAETVGG----HALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       408 ~i~~R~~~~a~~la~~~~~----~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      +|++|+.++++++++++..    ....++++.+ .+.++|+||+|||..
T Consensus       161 ~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~-al~~aDiVi~aT~s~  208 (330)
T PRK08291        161 RVWARDAAKAEAYAADLRAELGIPVTVARDVHE-AVAGADIIVTTTPSE  208 (330)
T ss_pred             EEEcCCHHHHHHHHHHHhhccCceEEEeCCHHH-HHccCCEEEEeeCCC
Confidence            9999999999999987742    1122344444 456789999999976

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=99.07  E-value=2.5e-10  Score=116.01  Aligned_cols=106  Identities=19%  Similarity=0.216  Sum_probs=84.0

Q ss_pred             hccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHH-HCCC-eEE
Q 012352          331 SIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAK-AKGA-RVV  408 (465)
Q Consensus       331 ~~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~-~~G~-~v~  408 (465)
                      ..|++|+++.+  ++.++|+|||+.|++.+..  +.           ....++++|+|+|++|+..+.+|. ..+. +|+
T Consensus        94 ~tG~~~ai~~d--~~~lT~~RTaa~~~laa~~--la-----------~~~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~  158 (326)
T TIGR02992        94 RTGLLQALLLD--NGYLTDVRTAAAGAVAARH--LA-----------REDSSVVAIFGAGMQARLQLEALTLVRDIRSAR  158 (326)
T ss_pred             CCCCceEEEcC--CchHHHHHHHHHHHHHHHH--hC-----------CCCCcEEEEECCCHHHHHHHHHHHHhCCccEEE
Confidence            45999999766  7889999999999998863  21           113578999999999999999997 4777 899


Q ss_pred             EEECCHHHHHHHHHHHCC----cccchhcccccCCCCeeEEEecCCCC
Q 012352          409 IANRTYDRARELAETVGG----HALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       409 i~~R~~~~a~~la~~~~~----~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      |+||+.++++++++++..    ....++++.+ .+.++|+||+|||..
T Consensus       159 V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~-av~~aDiVvtaT~s~  205 (326)
T TIGR02992       159 IWARDSAKAEALALQLSSLLGIDVTAATDPRA-AMSGADIIVTTTPSE  205 (326)
T ss_pred             EECCCHHHHHHHHHHHHhhcCceEEEeCCHHH-HhccCCEEEEecCCC
Confidence            999999999999988742    2223344444 456899999999875

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=99.06  E-value=7e-10  Score=114.43  Aligned_cols=128  Identities=27%  Similarity=0.371  Sum_probs=102.4

Q ss_pred             chHHHhhhccccCHHHHhccceeeEEEec-----cCCeE------EEEeccHHHHHHH-H-HhhhccCCCCCCCcccccC
Q 012352          314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQ-----SDGKL------FGYNTDYVGAISA-I-EDGLRGRLNVSGGVSSALA  380 (465)
Q Consensus       314 ~K~~v~~~~d~~~~~A~~~gavNtv~~~~-----~~g~l------~G~NTD~~G~~~~-l-~~~~~~~~~~~~~~~~~l~  380 (465)
                      ...+|++|++.....|++-|.+.+++.+.     .-|+-      +|.|-=..+.++. + ++.           ..+++
T Consensus       109 GE~QILGQVK~Ay~~a~~~g~~g~~L~~lFqkAi~~gKrvRseT~I~~~~VSi~saAv~lA~~~-----------~~~L~  177 (414)
T COG0373         109 GETQILGQVKDAYAKAQENGTLGKVLNRLFQKAISVGKRVRSETGIGKGAVSISSAAVELAKRI-----------FGSLK  177 (414)
T ss_pred             CcHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhcccCCCCCccchHHHHHHHHHHH-----------hcccc
Confidence            57899999999999999999999987552     12332      3333333333332 2 222           24588


Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      ++++||+|+|.||..++.+|.+.|+ +|+|+|||.++|++|+++++..+..++++.. .+.++|+||.+|+...
T Consensus       178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~-~l~~~DvVissTsa~~  250 (414)
T COG0373         178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLE-ALAEADVVISSTSAPH  250 (414)
T ss_pred             cCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHH-hhhhCCEEEEecCCCc
Confidence            9999999999999999999999998 9999999999999999999988888888877 6789999999998764

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=99.02  E-value=1.7e-09  Score=97.32  Aligned_cols=91  Identities=40%  Similarity=0.657  Sum_probs=73.4

Q ss_pred             ccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHCCcc--
Q 012352          352 TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKG-ARVVIANRTYDRARELAETVGGHA--  428 (465)
Q Consensus       352 TD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G-~~v~i~~R~~~~a~~la~~~~~~~--  428 (465)
                      ||+.||.+++++.           +.++++++++|+|+|++|++++..|.+.| .+|++++|+.+++++++++++...  
T Consensus         1 td~~g~~~a~~~~-----------~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~   69 (155)
T cd01065           1 TDGLGFVRALEEA-----------GIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIA   69 (155)
T ss_pred             CCHHHHHHHHHhh-----------CCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccc
Confidence            8999999999863           13467899999999999999999999997 589999999999999988876421  


Q ss_pred             cchhcccccCCCCeeEEEecCCCCCC
Q 012352          429 LSLADLENFNPEDGMILANTTSIGMQ  454 (465)
Q Consensus       429 ~~~~~l~~~~~~~~DilInaT~~gm~  454 (465)
                      ....+..+ ...++|+||+|||.++.
T Consensus        70 ~~~~~~~~-~~~~~Dvvi~~~~~~~~   94 (155)
T cd01065          70 IAYLDLEE-LLAEADLIINTTPVGMK   94 (155)
T ss_pred             eeecchhh-ccccCCEEEeCcCCCCC
Confidence            12233333 35679999999999875

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.96  E-value=2.8e-10  Score=119.59  Aligned_cols=133  Identities=29%  Similarity=0.405  Sum_probs=101.3

Q ss_pred             ccCchHHHhhhccccCHHHHhccceeeEEEec-----cCCeEEEEeccHHHHH-----HHHHhhhccCCCCCCCcccccC
Q 012352          311 TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ-----SDGKLFGYNTDYVGAI-----SAIEDGLRGRLNVSGGVSSALA  380 (465)
Q Consensus       311 T~P~K~~v~~~~d~~~~~A~~~gavNtv~~~~-----~~g~l~G~NTD~~G~~-----~~l~~~~~~~~~~~~~~~~~l~  380 (465)
                      -+-.+.+|++|++..++.|+..|++|+++.+.     ..++.++++|+..+.-     .+++....        ...++.
T Consensus       110 ~V~GE~qIlgQvk~a~~~a~~~g~~g~~l~~lf~~a~~~~k~v~~~t~i~~~~~Sv~~~Av~~a~~--------~~~~~~  181 (423)
T PRK00045        110 MVLGEPQILGQVKDAYALAQEAGTVGTILNRLFQKAFSVAKRVRTETGIGAGAVSVASAAVELAKQ--------IFGDLS  181 (423)
T ss_pred             hhcCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhHhhhcCCCCCCcCHHHHHHHHHHH--------hhCCcc
Confidence            34468899999999999999999999988320     1456777788854411     12222110        012467


Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      +++++|+|+|++|+.++..|...|+ +|++++|+.++++++++.++....+++++.+ .+.++|+||+|||..
T Consensus       182 ~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~-~l~~aDvVI~aT~s~  253 (423)
T PRK00045        182 GKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPE-ALAEADIVISSTGAP  253 (423)
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHH-HhccCCEEEECCCCC
Confidence            8999999999999999999999998 8999999999999999998765555555554 456799999999865

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.65  E-value=3.8e-08  Score=99.43  Aligned_cols=133  Identities=29%  Similarity=0.387  Sum_probs=94.5

Q ss_pred             ccCchHHHhhhccccCHHHHhccceeeEEEec-----cCCe------EEEEeccHHHHHHHHHhhhccCCCCCCCccccc
Q 012352          311 TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ-----SDGK------LFGYNTDYVGAISAIEDGLRGRLNVSGGVSSAL  379 (465)
Q Consensus       311 T~P~K~~v~~~~d~~~~~A~~~gavNtv~~~~-----~~g~------l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l  379 (465)
                      -+-...+|+.|+++....|+..|.++.++.+.     .-++      -.+.+-=..+.. +++....        ...++
T Consensus       106 ~v~GE~qIlgQvk~A~~~a~~~g~~~~~L~~lf~~a~~~~k~vr~et~i~~~~~sv~~~-Av~~a~~--------~~~~l  176 (311)
T cd05213         106 MVVGETQILGQVKNAYKLAKEAGTSGKLLNRLFQKAIKVGKRVRTETGISRGAVSISSA-AVELAEK--------IFGNL  176 (311)
T ss_pred             hhcCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHH-HHHHHHH--------HhCCc
Confidence            44568899999999999999999999887652     0011      111111112221 1221110        01236


Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      .+++++|+|+|.+|+.++..|...|+ +|++++|+++++++++++++....+++++.+ .+.++|+||.|||...
T Consensus       177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~-~l~~aDvVi~at~~~~  250 (311)
T cd05213         177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLE-LLNEADVVISATGAPH  250 (311)
T ss_pred             cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHH-HHhcCCEEEECCCCCc
Confidence            78999999999999999999998887 8999999999999999999875556655554 4567899999998754

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.65  E-value=8e-08  Score=90.23  Aligned_cols=98  Identities=27%  Similarity=0.358  Sum_probs=72.8

Q ss_pred             EEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-
Q 012352          349 GYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-  426 (465)
Q Consensus       349 G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-  426 (465)
                      |-||-....+..+++.+...       +.++++++++|+|+ |++|++++..|.+.|++|++++|+.++++++++.+.. 
T Consensus         3 G~~~ta~aav~~~~~~l~~~-------~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~   75 (194)
T cd01078           3 GSNTTAAAAVAAAGKALELM-------GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRAR   75 (194)
T ss_pred             CcHHHHHHHHHHHHHHHHHh-------CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhh
Confidence            44566666666666555321       24678899999996 9999999999999999999999999999999887641 


Q ss_pred             ---cc--cch---hcccccCCCCeeEEEecCCCCCC
Q 012352          427 ---HA--LSL---ADLENFNPEDGMILANTTSIGMQ  454 (465)
Q Consensus       427 ---~~--~~~---~~l~~~~~~~~DilInaT~~gm~  454 (465)
                         ..  .++   +++.+ .+.++|+||+|||.|+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~-~~~~~diVi~at~~g~~  110 (194)
T cd01078          76 FGEGVGAVETSDDAARAA-AIKGADVVFAAGAAGVE  110 (194)
T ss_pred             cCCcEEEeeCCCHHHHHH-HHhcCCEEEECCCCCce
Confidence               11  112   22223 35678999999999984

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.63  E-value=8.5e-08  Score=92.48  Aligned_cols=89  Identities=21%  Similarity=0.275  Sum_probs=64.2

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCC---eEEEEECC----HHHH-------HH
Q 012352          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA---RVVIANRT----YDRA-------RE  419 (465)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~---~v~i~~R~----~~~a-------~~  419 (465)
                      ..|+..+++..           +.++++++++|+|+|++|+++++.|...|+   +|+++||+    .+++       +.
T Consensus         9 lAG~~~al~~~-----------g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~   77 (226)
T cd05311           9 LAGLLNALKLV-----------GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNE   77 (226)
T ss_pred             HHHHHHHHHHh-----------CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHH
Confidence            35677777652           246889999999999999999999999997   59999999    5554       44


Q ss_pred             HHHHHCCcccchhcccccCCCCeeEEEecCCCCCCC
Q 012352          420 LAETVGGHALSLADLENFNPEDGMILANTTSIGMQP  455 (465)
Q Consensus       420 la~~~~~~~~~~~~l~~~~~~~~DilInaT~~gm~~  455 (465)
                      +++.++....+. ++.+ .+.++|+|||+||.||.+
T Consensus        78 la~~~~~~~~~~-~l~~-~l~~~dvlIgaT~~G~~~  111 (226)
T cd05311          78 IAKETNPEKTGG-TLKE-ALKGADVFIGVSRPGVVK  111 (226)
T ss_pred             HHHHhccCcccC-CHHH-HHhcCCEEEeCCCCCCCC
Confidence            555553211111 2322 345689999999988864

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PLN00203 glutamyl-tRNA reductase

Probab=98.58  E-value=8.4e-08  Score=102.82  Aligned_cols=131  Identities=22%  Similarity=0.241  Sum_probs=93.4

Q ss_pred             CchHHHhhhccccCHHHHhccceeeEEEec-----cCCeEEEEecc------HHH--HHHHHHhhhccCCCCCCCccccc
Q 012352          313 PHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ-----SDGKLFGYNTD------YVG--AISAIEDGLRGRLNVSGGVSSAL  379 (465)
Q Consensus       313 P~K~~v~~~~d~~~~~A~~~gavNtv~~~~-----~~g~l~G~NTD------~~G--~~~~l~~~~~~~~~~~~~~~~~l  379 (465)
                      -...+|+.|+++....|+..|.++.++.+.     ..|+-+-..|.      -.+  .+...++.++         ..++
T Consensus       194 lGE~QIlgQVK~A~~~A~~~g~~g~~L~~LF~~Ai~~~KrVRteT~I~~~~vSv~s~Av~la~~~~~---------~~~l  264 (519)
T PLN00203        194 LGEGQILAQVKQVVKVGQGVDGFGRNLSGLFKHAITAGKRVRTETNIASGAVSVSSAAVELALMKLP---------ESSH  264 (519)
T ss_pred             hCChHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHHHHHHhcC---------CCCC
Confidence            357799999999999999999999887552     11222211222      111  1111222221         1237


Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCc---ccchhcccccCCCCeeEEEecCCCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGH---ALSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~---~~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      .+++++|+|+|++|++++..|...|+ +|+|+||+.++++.++++++..   ..+++++.+ .+.++|+||+|||.+.
T Consensus       265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~-al~~aDVVIsAT~s~~  341 (519)
T PLN00203        265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLA-CAAEADVVFTSTSSET  341 (519)
T ss_pred             CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHH-HHhcCCEEEEccCCCC
Confidence            78999999999999999999999998 8999999999999999988532   234555544 4568999999998774

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=98.50  E-value=3.5e-07  Score=89.68  Aligned_cols=84  Identities=23%  Similarity=0.330  Sum_probs=65.5

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--------cchhcc----------cccCC
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--------LSLADL----------ENFNP  439 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--------~~~~~l----------~~~~~  439 (465)
                      ..+++++|+||. |+|++++..|++.|++|+++.|+.+++.++++++....        +|+.+.          .+ ..
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~-~~   82 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKE-RG   82 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHh-cC
Confidence            467899999995 99999999999999999999999999999999986421        233221          11 23


Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCC
Q 012352          440 EDGMILANTTSIGMQPKVDETPIP  463 (465)
Q Consensus       440 ~~~DilInaT~~gm~~~~~~~p~~  463 (465)
                      ..+|++||++|.|.+....+.+++
T Consensus        83 ~~IdvLVNNAG~g~~g~f~~~~~~  106 (265)
T COG0300          83 GPIDVLVNNAGFGTFGPFLELSLD  106 (265)
T ss_pred             CcccEEEECCCcCCccchhhCChH
Confidence            479999999999987644444543

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=98.50  E-value=8.3e-07  Score=88.64  Aligned_cols=95  Identities=27%  Similarity=0.310  Sum_probs=70.2

Q ss_pred             EEEEeccHHH--HHH-HHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Q 012352          347 LFGYNTDYVG--AIS-AIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET  423 (465)
Q Consensus       347 l~G~NTD~~G--~~~-~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~  423 (465)
                      ...+|+...+  .+. +++..           ..++.+++++|+|.|++|++++..|..+|++|++++|+.++.+.+. +
T Consensus       125 va~~n~~~~Ae~ai~~al~~~-----------~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-~  192 (287)
T TIGR02853       125 VAIYNSIPTAEGAIMMAIEHT-----------DFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARIT-E  192 (287)
T ss_pred             eEEEccHhHHHHHHHHHHHhc-----------CCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-H
Confidence            5668887544  332 33321           2578899999999999999999999999999999999988765543 3


Q ss_pred             HCCcccchhcccccCCCCeeEEEecCCCCCC
Q 012352          424 VGGHALSLADLENFNPEDGMILANTTSIGMQ  454 (465)
Q Consensus       424 ~~~~~~~~~~l~~~~~~~~DilInaT~~gm~  454 (465)
                      .+...+.++++.+ .+.++|+|||++|.++.
T Consensus       193 ~g~~~~~~~~l~~-~l~~aDiVint~P~~ii  222 (287)
T TIGR02853       193 MGLIPFPLNKLEE-KVAEIDIVINTIPALVL  222 (287)
T ss_pred             CCCeeecHHHHHH-HhccCCEEEECCChHHh
Confidence            3433445555555 45789999999998763

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=98.36  E-value=1.1e-06  Score=84.27  Aligned_cols=75  Identities=35%  Similarity=0.516  Sum_probs=61.3

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-c--c--cchhc----------ccccCCCCe
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-H--A--LSLAD----------LENFNPEDG  442 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-~--~--~~~~~----------l~~~~~~~~  442 (465)
                      +++|.++|+||+ |+|.++++.|++.|++|+++.|..++.++|+++++. .  .  .|+.+          +.+ ..++.
T Consensus         4 ~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~-~~g~i   82 (246)
T COG4221           4 LKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPE-EFGRI   82 (246)
T ss_pred             CCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHH-hhCcc
Confidence            457899999996 999999999999999999999999999999999983 2  1  23322          122 46789


Q ss_pred             eEEEecCCCCCC
Q 012352          443 MILANTTSIGMQ  454 (465)
Q Consensus       443 DilInaT~~gm~  454 (465)
                      |+|||++|+...
T Consensus        83 DiLvNNAGl~~g   94 (246)
T COG4221          83 DILVNNAGLALG   94 (246)
T ss_pred             cEEEecCCCCcC
Confidence            999999987653

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.32  E-value=1.3e-06  Score=87.57  Aligned_cols=75  Identities=25%  Similarity=0.296  Sum_probs=60.0

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      .++.+++++|+|+|++|++++..|+.+|++|++++|++++. +.++.++...+.++++.+ .+.++|+||||+|..+
T Consensus       148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~-~~~~~~G~~~~~~~~l~~-~l~~aDiVI~t~p~~~  222 (296)
T PRK08306        148 ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHL-ARITEMGLSPFHLSELAE-EVGKIDIIFNTIPALV  222 (296)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHcCCeeecHHHHHH-HhCCCCEEEECCChhh
Confidence            45678999999999999999999999999999999998764 344556655455555555 4568999999998764

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.28  E-value=1.5e-06  Score=91.31  Aligned_cols=127  Identities=29%  Similarity=0.418  Sum_probs=87.9

Q ss_pred             chHHHhhhccccCHHHHhccceeeEEEec-----cCCe-EE---EEeccH--HHHHH--HHHhhhccCCCCCCCcccccC
Q 012352          314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQ-----SDGK-LF---GYNTDY--VGAIS--AIEDGLRGRLNVSGGVSSALA  380 (465)
Q Consensus       314 ~K~~v~~~~d~~~~~A~~~gavNtv~~~~-----~~g~-l~---G~NTD~--~G~~~--~l~~~~~~~~~~~~~~~~~l~  380 (465)
                      ...+|+.+++.....|+..|.++..+.+.     .-++ +.   +-+.+.  .+...  ..++.+           ..+.
T Consensus       111 GE~qI~gQvk~a~~~a~~~~~~g~~l~~lf~~a~~~~k~vr~~t~i~~~~vSv~~~Av~la~~~~-----------~~l~  179 (417)
T TIGR01035       111 GETQILGQVKNAYKVAQEEKTVGKVLERLFQKAFSVGKRVRTETDISAGAVSISSAAVELAERIF-----------GSLK  179 (417)
T ss_pred             CChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhcCCCCCCcCHHHHHHHHHHHHh-----------CCcc
Confidence            44567888888888888888887654321     0011 11   111111  11111  112211           2467


Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      +++++|+|+|.+|+.++..|...|+ +|++++|+.+++++++++++...++++++.+ .+.++|+||+||+..
T Consensus       180 ~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~-~l~~aDvVi~aT~s~  251 (417)
T TIGR01035       180 GKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEE-YLAEADIVISSTGAP  251 (417)
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHH-HHhhCCEEEECCCCC
Confidence            8999999999999999999999996 9999999999999999988765555666555 456799999999765

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=98.15  E-value=3.1e-06  Score=85.82  Aligned_cols=121  Identities=12%  Similarity=0.046  Sum_probs=78.8

Q ss_pred             eccCchHHHhhhccccCHHHHhccceeeEEEec-----cCCeE------EEEeccHHHHHH-HHHhhhccCCCCCCCccc
Q 012352          310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ-----SDGKL------FGYNTDYVGAIS-AIEDGLRGRLNVSGGVSS  377 (465)
Q Consensus       310 vT~P~K~~v~~~~d~~~~~A~~~gavNtv~~~~-----~~g~l------~G~NTD~~G~~~-~l~~~~~~~~~~~~~~~~  377 (465)
                      --+-...+|+.|+++....|+..|+++.++.+.     ..||-      +|.+-=-.+.+. .+.+.+           .
T Consensus       102 SmVlGE~QIlGQVK~Ay~~A~~~g~~g~~L~~lf~~A~~~aKrVRteT~I~~~~vSv~s~av~~~~~~-----------~  170 (338)
T PRK00676        102 SLILGETEIQGQVKRAYLKAARERKLPFALHFLFQKALKEGKVFRSKGGAPYAEVTIESVVQQELRRR-----------Q  170 (338)
T ss_pred             hhhcCcHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHHHh-----------C
Confidence            334467899999999999999999988876442     11222      222211222221 111212           3


Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCC
Q 012352          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       378 ~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~  450 (465)
                      ++.+|+|||+|+|.+|+.++.+|.+.|+ +|+|+||+... ..    ++..  ..+.+ + ...++|+||.||+
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~-~~----~~~~--~~~~~-~-~~~~~DvVIs~t~  235 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT-LP----YRTV--VREEL-S-FQDPYDVIFFGSS  235 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc-cc----hhhh--hhhhh-h-cccCCCEEEEcCC
Confidence            5889999999999999999999999997 89999999743 11    1110  00111 2 2357899999864

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.14  E-value=4.9e-06  Score=82.00  Aligned_cols=77  Identities=21%  Similarity=0.393  Sum_probs=61.8

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC--cc----cch---hcc-------cccCC
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG--HA----LSL---ADL-------ENFNP  439 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~--~~----~~~---~~l-------~~~~~  439 (465)
                      .+.+|+.|||+|+| |.||+++..++++|+++.+|+.+.+...+.++++..  .+    +++   +++       .+ ..
T Consensus        34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~-e~  112 (300)
T KOG1201|consen   34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKK-EV  112 (300)
T ss_pred             hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHH-hc
Confidence            56789999999998 999999999999999999999999888888777752  21    232   222       23 56


Q ss_pred             CCeeEEEecCCCCCC
Q 012352          440 EDGMILANTTSIGMQ  454 (465)
Q Consensus       440 ~~~DilInaT~~gm~  454 (465)
                      +..|+|||++++-..
T Consensus       113 G~V~ILVNNAGI~~~  127 (300)
T KOG1201|consen  113 GDVDILVNNAGIVTG  127 (300)
T ss_pred             CCceEEEeccccccC
Confidence            789999999998754

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.12  E-value=2.6e-05  Score=77.48  Aligned_cols=128  Identities=20%  Similarity=0.310  Sum_probs=83.2

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHH--hhhccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v--~~~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      .+.++++|++.....++-    +++.+.++.+ .++.+.|+.|..|.-..+  ...++.+++ .+.+...+..-    -|
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p-~KDVDGl~~~n----~g  128 (286)
T PRK14175         54 KKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINP-EKDVDGFHPIN----IG  128 (286)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc-ccCcccCCccc----hH
Confidence            567899999987666654    2566666666 577899999999964322  112222222 12222222220    11


Q ss_pred             eEE-EE----eccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEEECCHHH
Q 012352          346 KLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRTYDR  416 (465)
Q Consensus       346 ~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg-~g~ai~~~L~~~G~~v~i~~R~~~~  416 (465)
                      +++ |.    -.--.|++..|+..           +.+++||+|+|+|.|+ +|+.++..|.+.|+.|++++|....
T Consensus       129 ~l~~~~~~~~PcTp~ai~~ll~~~-----------~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~  194 (286)
T PRK14175        129 KLYIDEQTFVPCTPLGIMEILKHA-----------DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKD  194 (286)
T ss_pred             hHhcCCCCCCCCcHHHHHHHHHHc-----------CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchh
Confidence            221 11    11245666666653           2578999999999998 9999999999999999999886543

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.11  E-value=4.9e-06  Score=82.29  Aligned_cols=82  Identities=29%  Similarity=0.439  Sum_probs=61.4

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC----Cc-c----cchhcc---cc------c
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG----GH-A----LSLADL---EN------F  437 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~----~~-~----~~~~~l---~~------~  437 (465)
                      ..+.+|.|+|+||. |+|+++|+.|+..|++++++.|..++.+.+++++.    .. .    .|+.+.   ..      .
T Consensus         8 e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~   87 (282)
T KOG1205|consen    8 ERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIR   87 (282)
T ss_pred             HHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHH
Confidence            45789999999996 99999999999999999999888888888766553    12 1    232221   11      1


Q ss_pred             CCCCeeEEEecCCCCCCCCCC
Q 012352          438 NPEDGMILANTTSIGMQPKVD  458 (465)
Q Consensus       438 ~~~~~DilInaT~~gm~~~~~  458 (465)
                      .+++.|+|||++|++.....+
T Consensus        88 ~fg~vDvLVNNAG~~~~~~~~  108 (282)
T KOG1205|consen   88 HFGRVDVLVNNAGISLVGFLE  108 (282)
T ss_pred             hcCCCCEEEecCccccccccc
Confidence            578999999999998743333

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.06  E-value=2.5e-05  Score=73.89  Aligned_cols=91  Identities=22%  Similarity=0.291  Sum_probs=67.1

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhc
Q 012352          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLAD  433 (465)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~  433 (465)
                      +.|...+++..+...-     .+.++++|+++|+|.|.+|+.+++.|.+.|++|+++++++++.+.+.+.++...++.++
T Consensus         6 g~Gv~~~~~~~~~~~~-----~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~   80 (200)
T cd01075           6 AYGVFLGMKAAAEHLL-----GTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEE   80 (200)
T ss_pred             HHHHHHHHHHHHHHhc-----CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchh
Confidence            4566555554432110     03578999999999999999999999999999999999999999988877654444433


Q ss_pred             ccccCCCCeeEEEecCCCC
Q 012352          434 LENFNPEDGMILANTTSIG  452 (465)
Q Consensus       434 l~~~~~~~~DilInaT~~g  452 (465)
                      +..   .++|++|.|+.-+
T Consensus        81 l~~---~~~Dv~vp~A~~~   96 (200)
T cd01075          81 IYS---VDADVFAPCALGG   96 (200)
T ss_pred             hcc---ccCCEEEeccccc
Confidence            322   3689999887644

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK06141 ornithine cyclodeaminase; Validated

Probab=98.04  E-value=9.8e-06  Score=82.03  Aligned_cols=72  Identities=22%  Similarity=0.270  Sum_probs=56.5

Q ss_pred             CCcEEEEEccchhHHHHHHHHHH-CCC-eEEEEECCHHHHHHHHHHHCC---cccchhcccccCCCCeeEEEecCCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYDRARELAETVGG---HALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~-~G~-~v~i~~R~~~~a~~la~~~~~---~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ..++++|+|+|++|+.++.++.. .+. +|+|+||++++++++++++..   .....++..+ .+.++|+||++|+..
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~-av~~aDIVi~aT~s~  200 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEA-AVRQADIISCATLST  200 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHH-HHhcCCEEEEeeCCC
Confidence            46899999999999999987765 565 899999999999999998742   1222233333 456799999999966

>PRK07340 ornithine cyclodeaminase; Validated

Probab=98.00  E-value=2.1e-05  Score=79.19  Aligned_cols=74  Identities=20%  Similarity=0.142  Sum_probs=58.4

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHH-CCC-eEEEEECCHHHHHHHHHHHCCcc--cchhcccccCCCCeeEEEecCCCCC
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYDRARELAETVGGHA--LSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~-~G~-~v~i~~R~~~~a~~la~~~~~~~--~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      ...++++|+|+|+.|+..+.++.. .+. +|+|++|++++++++++++....  +..+++.+ .+.++|+||+|||...
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~-av~~aDiVitaT~s~~  200 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEA-IPEAVDLVVTATTSRT  200 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHH-HhhcCCEEEEccCCCC
Confidence            356899999999999999999975 676 89999999999999999885321  11233444 4568999999999764

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.00  E-value=1.5e-05  Score=73.36  Aligned_cols=58  Identities=26%  Similarity=0.304  Sum_probs=45.6

Q ss_pred             cccCCcEEEEEccchh-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          377 SALAGKLFVVIGAGGA-GKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~-g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      .++.+|+|+|+|+|++ |+.++..|.+.|++|++++|+.+...+                  .+.++|+||+||+..
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~------------------~l~~aDiVIsat~~~   98 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKE------------------HTKQADIVIVAVGKP   98 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHH------------------HHhhCCEEEEcCCCC
Confidence            4689999999999996 888999999999999999998643322                  234567777777653

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.97  E-value=1.4e-05  Score=81.20  Aligned_cols=73  Identities=21%  Similarity=0.350  Sum_probs=57.0

Q ss_pred             CCcEEEEEccchhHHHHHHHHH-HCCC-eEEEEECCHHHHHHHHHHHCC----cccchhcccccCCCCeeEEEecCCCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAK-AKGA-RVVIANRTYDRARELAETVGG----HALSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~-~~G~-~v~i~~R~~~~a~~la~~~~~----~~~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      ..++++|+|+|++|+..+.++. ..++ +|+|++|++++++++++++..    ....+++..+ .+.++|+||+|||.+.
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~aDiVi~aT~s~~  204 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADE-AIEEADIIVTVTNAKT  204 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHH-HHhcCCEEEEccCCCC
Confidence            4689999999999999988875 4577 899999999999999987642    2223344444 4567999999999773

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.95  E-value=3.2e-05  Score=70.27  Aligned_cols=70  Identities=36%  Similarity=0.413  Sum_probs=46.8

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      ..+.+|+++|+|-|..|+.+|++|..+|++|+|+.+++-++-+..-+ +....++   ++ .+..+|++|.+|+-
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~d-Gf~v~~~---~~-a~~~adi~vtaTG~   88 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMD-GFEVMTL---EE-ALRDADIFVTATGN   88 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHT-T-EEE-H---HH-HTTT-SEEEE-SSS
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhc-CcEecCH---HH-HHhhCCEEEECCCC
Confidence            56889999999999999999999999999999999999876554321 2222233   33 34578999999975

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.93  E-value=2.8e-05  Score=78.58  Aligned_cols=80  Identities=31%  Similarity=0.412  Sum_probs=62.6

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc---------ccchhccc---c----c--
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH---------ALSLADLE---N----F--  437 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~---------~~~~~~l~---~----~--  437 (465)
                      .++.++.++|+|+ +|+|+++++.|+.+|++|++..|+.+++++.++++...         ..|+.++.   .    +  
T Consensus        31 ~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~  110 (314)
T KOG1208|consen   31 IDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKK  110 (314)
T ss_pred             ccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence            4567899999999 59999999999999999999999999999998888531         12332221   1    1  


Q ss_pred             CCCCeeEEEecCCCCCCCC
Q 012352          438 NPEDGMILANTTSIGMQPK  456 (465)
Q Consensus       438 ~~~~~DilInaT~~gm~~~  456 (465)
                      .....|++||++|+...+.
T Consensus       111 ~~~~ldvLInNAGV~~~~~  129 (314)
T KOG1208|consen  111 KEGPLDVLINNAGVMAPPF  129 (314)
T ss_pred             cCCCccEEEeCcccccCCc
Confidence            3567899999999987654

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=97.88  E-value=4.8e-05  Score=75.37  Aligned_cols=77  Identities=35%  Similarity=0.437  Sum_probs=60.1

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC------cc----cchh---cc--------
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG------HA----LSLA---DL--------  434 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~------~~----~~~~---~l--------  434 (465)
                      ..+.+|.++|+|++ |+|+++|..|+++|++|+|++|+.++.++.+.++..      +.    .++.   +.        
T Consensus         4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~   83 (270)
T KOG0725|consen    4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAV   83 (270)
T ss_pred             ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHH
Confidence            45789999999997 999999999999999999999999998888776531      11    1221   11        


Q ss_pred             cccCCCCeeEEEecCCCCCC
Q 012352          435 ENFNPEDGMILANTTSIGMQ  454 (465)
Q Consensus       435 ~~~~~~~~DilInaT~~gm~  454 (465)
                      .+ ..++.|++||+++....
T Consensus        84 ~~-~~GkidiLvnnag~~~~  102 (270)
T KOG0725|consen   84 EK-FFGKIDILVNNAGALGL  102 (270)
T ss_pred             HH-hCCCCCEEEEcCCcCCC
Confidence            11 25789999999988764

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.87  E-value=3e-05  Score=80.21  Aligned_cols=72  Identities=26%  Similarity=0.345  Sum_probs=57.7

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhcccccCCCCeeEEEecCCC
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      +.+++|+|+|+|.+|+.++..+..+|++|++++|++++.+.+...++...    .+.+++.+ .+.++|+||||+++
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~-~l~~aDvVI~a~~~  240 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIED-AVKRADLLIGAVLI  240 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHH-HHccCCEEEEcccc
Confidence            45678999999999999999999999999999999999888887776421    12233444 45679999999865

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK05872 short chain dehydrogenase; Provisional

Probab=97.86  E-value=6e-05  Score=75.28  Aligned_cols=77  Identities=27%  Similarity=0.411  Sum_probs=59.5

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc--c----cchhc---cccc------CCC
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH--A----LSLAD---LENF------NPE  440 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~--~----~~~~~---l~~~------~~~  440 (465)
                      .++++|+++|+|+ ||+|++++..|++.|++|++++|+.+++++++++++..  .    .|+.+   +.+.      ..+
T Consensus         5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   84 (296)
T PRK05872          5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFG   84 (296)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4577899999998 59999999999999999999999999999998887521  1    22221   1110      246


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+|||+++...
T Consensus        85 ~id~vI~nAG~~~   97 (296)
T PRK05872         85 GIDVVVANAGIAS   97 (296)
T ss_pred             CCCEEEECCCcCC
Confidence            7899999998754

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=97.86  E-value=3.3e-05  Score=71.62  Aligned_cols=74  Identities=30%  Similarity=0.408  Sum_probs=59.6

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC--cc----cch----------hcccccCCCC
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG--HA----LSL----------ADLENFNPED  441 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~--~~----~~~----------~~l~~~~~~~  441 (465)
                      +..|.++|.|+| |+|||++..|+..|++|.+++++.+.|++.+..+++  .+    .|+          ++... .++.
T Consensus        12 ~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k-~~g~   90 (256)
T KOG1200|consen   12 LMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEK-SLGT   90 (256)
T ss_pred             HhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHH-hcCC
Confidence            456889999998 999999999999999999999999999999999875  22    122          11122 4678


Q ss_pred             eeEEEecCCCCC
Q 012352          442 GMILANTTSIGM  453 (465)
Q Consensus       442 ~DilInaT~~gm  453 (465)
                      .+++|||+++--
T Consensus        91 psvlVncAGItr  102 (256)
T KOG1200|consen   91 PSVLVNCAGITR  102 (256)
T ss_pred             CcEEEEcCcccc
Confidence            999999999863

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=97.85  E-value=3.9e-05  Score=71.79  Aligned_cols=76  Identities=24%  Similarity=0.311  Sum_probs=58.0

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC---cccchhccc------cc---CCCCeeEE
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG---HALSLADLE------NF---NPEDGMIL  445 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~---~~~~~~~l~------~~---~~~~~Dil  445 (465)
                      +.|.++||+|+| |+|++.+..|.++|-+|+|++|++++.++..+....   .+.|+.|..      ++   .....++|
T Consensus         3 ~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNvl   82 (245)
T COG3967           3 TTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYPNLNVL   82 (245)
T ss_pred             ccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCCchhee
Confidence            457899999887 999999999999999999999999998887665542   223332211      11   34578999


Q ss_pred             EecCCCCCC
Q 012352          446 ANTTSIGMQ  454 (465)
Q Consensus       446 InaT~~gm~  454 (465)
                      ||++|+.-.
T Consensus        83 iNNAGIqr~   91 (245)
T COG3967          83 INNAGIQRN   91 (245)
T ss_pred             eecccccch
Confidence            999998743

>PRK05854 short chain dehydrogenase; Provisional

Probab=97.85  E-value=6.8e-05  Score=75.63  Aligned_cols=78  Identities=26%  Similarity=0.352  Sum_probs=58.1

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC----C-cc----cchhc---cccc------
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG----G-HA----LSLAD---LENF------  437 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~----~-~~----~~~~~---l~~~------  437 (465)
                      .++++|+++|+|++ |+|++++..|++.|++|+++.|+.++++++.+++.    . ..    .|+.+   +.++      
T Consensus        10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~   89 (313)
T PRK05854         10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRA   89 (313)
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHH
Confidence            45789999999985 99999999999999999999999998888776652    1 11    13222   1110      


Q ss_pred             CCCCeeEEEecCCCCCC
Q 012352          438 NPEDGMILANTTSIGMQ  454 (465)
Q Consensus       438 ~~~~~DilInaT~~gm~  454 (465)
                      ..+..|+|||+++....
T Consensus        90 ~~~~iD~li~nAG~~~~  106 (313)
T PRK05854         90 EGRPIHLLINNAGVMTP  106 (313)
T ss_pred             hCCCccEEEECCccccC
Confidence            34578999999987643

>PRK08339 short chain dehydrogenase; Provisional

Probab=97.83  E-value=8.3e-05  Score=72.89  Aligned_cols=76  Identities=24%  Similarity=0.252  Sum_probs=56.7

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC----Ccc----cchhc---cccc-----CCC
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG----GHA----LSLAD---LENF-----NPE  440 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~----~~~----~~~~~---l~~~-----~~~  440 (465)
                      ++++|+++|+|++ |+|++++..|+++|++|++++|+.++++++++++.    ...    .|+.+   +..+     ..+
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g   84 (263)
T PRK08339          5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIG   84 (263)
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence            4678999999985 99999999999999999999999999888877652    111    12211   1110     235


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|++||+++...
T Consensus        85 ~iD~lv~nag~~~   97 (263)
T PRK08339         85 EPDIFFFSTGGPK   97 (263)
T ss_pred             CCcEEEECCCCCC
Confidence            6899999998643

>PRK08862 short chain dehydrogenase; Provisional

Probab=97.78  E-value=8e-05  Score=71.63  Aligned_cols=74  Identities=12%  Similarity=0.245  Sum_probs=55.5

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH---CCcc----cch---hccccc------CCC-
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHA----LSL---ADLENF------NPE-  440 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~---~~~~----~~~---~~l~~~------~~~-  440 (465)
                      +++|.++|+|++ |+|++++..|++.|++|++++|+.++.+++.+++   +...    .+.   +++.++      ..+ 
T Consensus         3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (227)
T PRK08862          3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNR   82 (227)
T ss_pred             CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            568999999997 9999999999999999999999999988887665   2221    121   111110      345 


Q ss_pred             CeeEEEecCCCC
Q 012352          441 DGMILANTTSIG  452 (465)
Q Consensus       441 ~~DilInaT~~g  452 (465)
                      ..|++||+++..
T Consensus        83 ~iD~li~nag~~   94 (227)
T PRK08862         83 APDVLVNNWTSS   94 (227)
T ss_pred             CCCEEEECCccC
Confidence            799999999743

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.78  E-value=3.5e-05  Score=70.23  Aligned_cols=77  Identities=23%  Similarity=0.297  Sum_probs=61.0

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCccc-------chhccccc--CCCCeeEEEe
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL-------SLADLENF--NPEDGMILAN  447 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~-------~~~~l~~~--~~~~~DilIn  447 (465)
                      .+.|+.++++|+| |+|++++..|+..|++|+-+.|+++...+|.++......       .|+.+.+.  .....|.+||
T Consensus         4 ~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~v~pidgLVN   83 (245)
T KOG1207|consen    4 SLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKETPSLIIPIVGDLSAWEALFKLLVPVFPIDGLVN   83 (245)
T ss_pred             cccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhCCcceeeeEecccHHHHHHHhhcccCchhhhhc
Confidence            4678999999999 999999999999999999999999999999987654322       23333221  2346899999


Q ss_pred             cCCCCCC
Q 012352          448 TTSIGMQ  454 (465)
Q Consensus       448 aT~~gm~  454 (465)
                      ++++...
T Consensus        84 NAgvA~~   90 (245)
T KOG1207|consen   84 NAGVATN   90 (245)
T ss_pred             cchhhhc
Confidence            9988653

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=97.77  E-value=9.3e-05  Score=71.74  Aligned_cols=76  Identities=30%  Similarity=0.421  Sum_probs=57.2

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC---cc----cchhc---c-------cccC
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG---HA----LSLAD---L-------ENFN  438 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~---~~----~~~~~---l-------~~~~  438 (465)
                      .++++|+++|+|+ |++|++++..|++.|++|++.+|+.++.+++.+.+..   ..    .++.+   +       .+ .
T Consensus         6 ~~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~   84 (255)
T PRK07523          6 FDLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEA-E   84 (255)
T ss_pred             cCCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHH-h
Confidence            3477899999998 6999999999999999999999999888877766532   11    12211   1       11 3


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|+|||+++...
T Consensus        85 ~~~~d~li~~ag~~~   99 (255)
T PRK07523         85 IGPIDILVNNAGMQF   99 (255)
T ss_pred             cCCCCEEEECCCCCC
Confidence            456899999988754

>PRK06139 short chain dehydrogenase; Provisional

Probab=97.74  E-value=9.4e-05  Score=75.37  Aligned_cols=77  Identities=26%  Similarity=0.390  Sum_probs=58.2

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---cccc------CCC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---LENF------NPE  440 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l~~~------~~~  440 (465)
                      .+.+|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++.   ...    .|+.+   +.+.      ..+
T Consensus         4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   83 (330)
T PRK06139          4 PLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGG   83 (330)
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            356899999999 599999999999999999999999999988877652   221    12211   1110      236


Q ss_pred             CeeEEEecCCCCCC
Q 012352          441 DGMILANTTSIGMQ  454 (465)
Q Consensus       441 ~~DilInaT~~gm~  454 (465)
                      ..|++||+++.+..
T Consensus        84 ~iD~lVnnAG~~~~   97 (330)
T PRK06139         84 RIDVWVNNVGVGAV   97 (330)
T ss_pred             CCCEEEECCCcCCC
Confidence            78999999987654

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.73  E-value=8.6e-05  Score=73.26  Aligned_cols=73  Identities=18%  Similarity=0.262  Sum_probs=52.3

Q ss_pred             cCCcEEEEEccc---hhHHHHHHHHHHCCCeEEEEECCHHHH---HHHHHHHCCc-c--cchhc---c-------cccCC
Q 012352          379 LAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYDRA---RELAETVGGH-A--LSLAD---L-------ENFNP  439 (465)
Q Consensus       379 l~~k~vlV~GaG---g~g~ai~~~L~~~G~~v~i~~R~~~~a---~~la~~~~~~-~--~~~~~---l-------~~~~~  439 (465)
                      +++|.+||+|++   |+|++++.+|++.|++|+++.|+.+..   +++.++++.. .  .|+.+   +       .+ ..
T Consensus         5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~-~~   83 (271)
T PRK06505          5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEK-KW   83 (271)
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHH-Hh
Confidence            678999999997   899999999999999999999986433   3344443321 1  22211   1       11 34


Q ss_pred             CCeeEEEecCCCC
Q 012352          440 EDGMILANTTSIG  452 (465)
Q Consensus       440 ~~~DilInaT~~g  452 (465)
                      +..|++||++++.
T Consensus        84 g~iD~lVnnAG~~   96 (271)
T PRK06505         84 GKLDFVVHAIGFS   96 (271)
T ss_pred             CCCCEEEECCccC
Confidence            6799999999875

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=97.73  E-value=0.0001  Score=71.83  Aligned_cols=73  Identities=25%  Similarity=0.353  Sum_probs=56.9

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchh---cc-------cccCCCCee
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLA---DL-------ENFNPEDGM  443 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~---~l-------~~~~~~~~D  443 (465)
                      +++|+++|+|+ ||+|++++..|++.|++|++++|+.++++++.++++...    .++.   ++       .+ ..+..|
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~g~id   82 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVD-AFGKLD   82 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHH-hcCCCC
Confidence            56899999998 599999999999999999999999999988887765321    1221   11       11 346789


Q ss_pred             EEEecCCCC
Q 012352          444 ILANTTSIG  452 (465)
Q Consensus       444 ilInaT~~g  452 (465)
                      +|||+++..
T Consensus        83 ~li~~ag~~   91 (263)
T PRK06200         83 CFVGNAGIW   91 (263)
T ss_pred             EEEECCCCc
Confidence            999999875

>PRK05876 short chain dehydrogenase; Provisional

Probab=97.71  E-value=0.00013  Score=72.18  Aligned_cols=75  Identities=17%  Similarity=0.209  Sum_probs=56.9

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC---cc----cchhc---c-------cccCCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG---HA----LSLAD---L-------ENFNPE  440 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~---~~----~~~~~---l-------~~~~~~  440 (465)
                      +++|+++|+|+ ||+|++++..|++.|++|++++|+.++++++.+++..   ..    .|+.+   +       .+ ..+
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~-~~g   82 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFR-LLG   82 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH-HcC
Confidence            56899999998 5999999999999999999999999888887776632   11    22211   1       11 345


Q ss_pred             CeeEEEecCCCCCC
Q 012352          441 DGMILANTTSIGMQ  454 (465)
Q Consensus       441 ~~DilInaT~~gm~  454 (465)
                      ..|+|||+++.+..
T Consensus        83 ~id~li~nAg~~~~   96 (275)
T PRK05876         83 HVDVVFSNAGIVVG   96 (275)
T ss_pred             CCCEEEECCCcCCC
Confidence            78999999987643

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.69  E-value=0.00014  Score=71.44  Aligned_cols=73  Identities=18%  Similarity=0.261  Sum_probs=50.3

Q ss_pred             cCCcEEEEEccc---hhHHHHHHHHHHCCCeEEEEECCH---HHHHHHHHHHCCc-c--cchhc---c-------cccCC
Q 012352          379 LAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTY---DRARELAETVGGH-A--LSLAD---L-------ENFNP  439 (465)
Q Consensus       379 l~~k~vlV~GaG---g~g~ai~~~L~~~G~~v~i~~R~~---~~a~~la~~~~~~-~--~~~~~---l-------~~~~~  439 (465)
                      +++|.++|+|++   |+|++++..|++.|++|+++.|+.   +.++++....+.. .  .|+.+   +       .+ ..
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~-~~   82 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGK-VW   82 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHh-hc
Confidence            568999999985   899999999999999999999873   2233333322211 1  12211   1       12 34


Q ss_pred             CCeeEEEecCCCC
Q 012352          440 EDGMILANTTSIG  452 (465)
Q Consensus       440 ~~~DilInaT~~g  452 (465)
                      +..|++||+++++
T Consensus        83 g~iD~linnAg~~   95 (262)
T PRK07984         83 PKFDGFVHSIGFA   95 (262)
T ss_pred             CCCCEEEECCccC
Confidence            6789999999875

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.69  E-value=6.7e-05  Score=77.46  Aligned_cols=70  Identities=31%  Similarity=0.431  Sum_probs=55.0

Q ss_pred             cEEEEEccchhHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHCCc--c--cchh---cccccCCCCeeEEEecCCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKG-ARVVIANRTYDRARELAETVGGH--A--LSLA---DLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G-~~v~i~~R~~~~a~~la~~~~~~--~--~~~~---~l~~~~~~~~DilInaT~~g  452 (465)
                      +++||+|+|++|+.++..|++.| .+|++++|+.++++++.+....+  +  ++..   .+.+ .+.+.|+|||+.|-.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~-li~~~d~VIn~~p~~   79 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVA-LIKDFDLVINAAPPF   79 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHH-HHhcCCEEEEeCCch
Confidence            57999999999999999999999 59999999999999987765322  1  2332   2333 456779999999854

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=97.67  E-value=0.00023  Score=57.88  Aligned_cols=52  Identities=33%  Similarity=0.533  Sum_probs=41.6

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEEC
Q 012352          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANR  412 (465)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R  412 (465)
                      +.|.+..++...+.       .+.++.+++++|+|+|++|+.++..|.+.|. +|++++|
T Consensus         3 ~~~~~~~l~~~~~~-------~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191           3 AAGAVALLKAAGKV-------TNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             hHHHHHHHHHHHHH-------hCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            56677777765431       1245788999999999999999999999865 9999999

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.66  E-value=0.00014  Score=71.88  Aligned_cols=73  Identities=14%  Similarity=0.280  Sum_probs=53.2

Q ss_pred             cCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEECCH---HHHHHHHHHHCCc-c--cchhc---c-------cccCC
Q 012352          379 LAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTY---DRARELAETVGGH-A--LSLAD---L-------ENFNP  439 (465)
Q Consensus       379 l~~k~vlV~Ga---Gg~g~ai~~~L~~~G~~v~i~~R~~---~~a~~la~~~~~~-~--~~~~~---l-------~~~~~  439 (465)
                      +++|.++|+|+   +|+|++++..|++.|++|+++.|+.   ++.+++.++++.. .  .|+.+   +       .+ ..
T Consensus         3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~-~~   81 (274)
T PRK08415          3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKK-DL   81 (274)
T ss_pred             cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHH-Hc
Confidence            46899999998   4999999999999999999999985   3455555555432 1  22221   1       11 34


Q ss_pred             CCeeEEEecCCCC
Q 012352          440 EDGMILANTTSIG  452 (465)
Q Consensus       440 ~~~DilInaT~~g  452 (465)
                      +..|++||++++.
T Consensus        82 g~iDilVnnAG~~   94 (274)
T PRK08415         82 GKIDFIVHSVAFA   94 (274)
T ss_pred             CCCCEEEECCccC
Confidence            6789999999875

>PRK08265 short chain dehydrogenase; Provisional

Probab=97.66  E-value=0.00013  Score=71.23  Aligned_cols=74  Identities=32%  Similarity=0.364  Sum_probs=56.9

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---cccc------CCCCeeE
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---LENF------NPEDGMI  444 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~Di  444 (465)
                      +++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.++++...    .|+.+   +.+.      ..+..|+
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~   83 (261)
T PRK08265          4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDI   83 (261)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            56899999998 699999999999999999999999998888888775321    22211   1110      2457899


Q ss_pred             EEecCCCC
Q 012352          445 LANTTSIG  452 (465)
Q Consensus       445 lInaT~~g  452 (465)
                      |||+++..
T Consensus        84 lv~~ag~~   91 (261)
T PRK08265         84 LVNLACTY   91 (261)
T ss_pred             EEECCCCC
Confidence            99998764

>PRK05867 short chain dehydrogenase; Provisional

Probab=97.66  E-value=0.00013  Score=70.60  Aligned_cols=75  Identities=29%  Similarity=0.387  Sum_probs=57.3

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchh---cc-------cccCC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLA---DL-------ENFNP  439 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~---~l-------~~~~~  439 (465)
                      .+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++.   ...    .++.   ++       .+ ..
T Consensus         6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~   84 (253)
T PRK05867          6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTA-EL   84 (253)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH-Hh
Confidence            467899999998 599999999999999999999999999888887763   111    1221   11       11 24


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +..|+|||+++...
T Consensus        85 g~id~lv~~ag~~~   98 (253)
T PRK05867         85 GGIDIAVCNAGIIT   98 (253)
T ss_pred             CCCCEEEECCCCCC
Confidence            67899999998653

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=97.65  E-value=0.00013  Score=71.18  Aligned_cols=73  Identities=23%  Similarity=0.277  Sum_probs=55.5

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---c-------cccCCCCee
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---L-------ENFNPEDGM  443 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l-------~~~~~~~~D  443 (465)
                      +++|+++|+|+ ||+|++++..|++.|++|++++|+.++++++.+..+...    .++.+   +       .+ ..+..|
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~g~id   81 (262)
T TIGR03325         3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVA-AFGKID   81 (262)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHH-HhCCCC
Confidence            56899999998 599999999999999999999999998888876554321    12211   1       11 246789


Q ss_pred             EEEecCCCC
Q 012352          444 ILANTTSIG  452 (465)
Q Consensus       444 ilInaT~~g  452 (465)
                      +|||+++..
T Consensus        82 ~li~~Ag~~   90 (262)
T TIGR03325        82 CLIPNAGIW   90 (262)
T ss_pred             EEEECCCCC
Confidence            999999864

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK07062 short chain dehydrogenase; Provisional

Probab=97.65  E-value=0.00018  Score=70.17  Aligned_cols=75  Identities=27%  Similarity=0.318  Sum_probs=56.3

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC----C-cc----cchhc---c-------ccc
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG----G-HA----LSLAD---L-------ENF  437 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~----~-~~----~~~~~---l-------~~~  437 (465)
                      ++++|+++|+|++ |+|++++..|++.|++|++++|+.++.+++.+++.    . ..    .|+.+   +       .+ 
T Consensus         5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~-   83 (265)
T PRK07062          5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEA-   83 (265)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHH-
Confidence            4678999999995 99999999999999999999999988877766542    1 11    12211   1       11 


Q ss_pred             CCCCeeEEEecCCCCC
Q 012352          438 NPEDGMILANTTSIGM  453 (465)
Q Consensus       438 ~~~~~DilInaT~~gm  453 (465)
                      ..+..|+|||+++...
T Consensus        84 ~~g~id~li~~Ag~~~   99 (265)
T PRK07062         84 RFGGVDMLVNNAGQGR   99 (265)
T ss_pred             hcCCCCEEEECCCCCC
Confidence            3467899999998753

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.64  E-value=0.00017  Score=70.39  Aligned_cols=75  Identities=21%  Similarity=0.204  Sum_probs=53.8

Q ss_pred             cccCCcEEEEEccc---hhHHHHHHHHHHCCCeEEEEECCHHH---HHHHHHHHCCc-c--cch---hcc-------ccc
Q 012352          377 SALAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYDR---ARELAETVGGH-A--LSL---ADL-------ENF  437 (465)
Q Consensus       377 ~~l~~k~vlV~GaG---g~g~ai~~~L~~~G~~v~i~~R~~~~---a~~la~~~~~~-~--~~~---~~l-------~~~  437 (465)
                      .++++|.++|+|++   |+|++++..|++.|++|++++|+.+.   .++++++++.. .  .|+   +++       .+ 
T Consensus         6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~-   84 (258)
T PRK07533          6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAE-   84 (258)
T ss_pred             cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHH-
Confidence            45789999999975   89999999999999999999998543   45555555421 1  122   111       11 


Q ss_pred             CCCCeeEEEecCCCC
Q 012352          438 NPEDGMILANTTSIG  452 (465)
Q Consensus       438 ~~~~~DilInaT~~g  452 (465)
                      ..+..|++||+++..
T Consensus        85 ~~g~ld~lv~nAg~~   99 (258)
T PRK07533         85 EWGRLDFLLHSIAFA   99 (258)
T ss_pred             HcCCCCEEEEcCccC
Confidence            346789999999764

>PRK06196 oxidoreductase; Provisional

Probab=97.64  E-value=0.0002  Score=72.06  Aligned_cols=76  Identities=32%  Similarity=0.434  Sum_probs=57.1

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-cc--cchhc---cccc------CCCCeeE
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-HA--LSLAD---LENF------NPEDGMI  444 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-~~--~~~~~---l~~~------~~~~~Di  444 (465)
                      ++++|+++|+|+ ||+|++++..|++.|++|++++|+.++++++.+++.. ..  .++.+   +.++      ..+..|+
T Consensus        23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~  102 (315)
T PRK06196         23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRIDI  102 (315)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCCE
Confidence            467899999999 5999999999999999999999999988887766532 11  22221   1110      2457899


Q ss_pred             EEecCCCCC
Q 012352          445 LANTTSIGM  453 (465)
Q Consensus       445 lInaT~~gm  453 (465)
                      |||+++...
T Consensus       103 li~nAg~~~  111 (315)
T PRK06196        103 LINNAGVMA  111 (315)
T ss_pred             EEECCCCCC
Confidence            999998753

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.64  E-value=0.00046  Score=69.04  Aligned_cols=135  Identities=18%  Similarity=0.219  Sum_probs=86.4

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHH--hhhccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v--~~~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      .+.++++|++.....+.-    +++.+.++.+ .++.+.|+.|.+|.-..+  ...++.+++ -+.+...+..-    -|
T Consensus        55 ~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p-~KDVDGl~~~N----~g  129 (301)
T PRK14194         55 ILRAEEAGIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINP-LKDVDGFHSEN----VG  129 (301)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCc-hhccCccChhh----hh
Confidence            567899999987666643    2577777777 577899999999964211  111111111 11222222210    01


Q ss_pred             eE-EEE----eccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHH
Q 012352          346 KL-FGY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARE  419 (465)
Q Consensus       346 ~l-~G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~  419 (465)
                      ++ .|.    -.--.|++.-|+..           +.++.||+|.|+|.| -+|+.++..|.+.|+.|++++|+....++
T Consensus       130 ~l~~~~~~~~PcTp~aii~lL~~~-----------~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e  198 (301)
T PRK14194        130 GLSQGRDVLTPCTPSGCLRLLEDT-----------CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKA  198 (301)
T ss_pred             HHhcCCCCCCCCcHHHHHHHHHHh-----------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHH
Confidence            12 111    11246677766653           267899999999997 79999999999999999999887665555


Q ss_pred             HHHH
Q 012352          420 LAET  423 (465)
Q Consensus       420 la~~  423 (465)
                      ++++
T Consensus       199 ~~~~  202 (301)
T PRK14194        199 LCRQ  202 (301)
T ss_pred             HHhc
Confidence            5543

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.64  E-value=0.00058  Score=67.80  Aligned_cols=133  Identities=18%  Similarity=0.246  Sum_probs=83.7

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHH--hhhccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v--~~~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      .+.++++|++.....++.    +++.+.++.+ .+++..|+.|..|.-..+  ...++.+++ .+.+...+..-    -|
T Consensus        55 ~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p-~KDVDGl~~~n----~g  129 (285)
T PRK10792         55 RKACEEVGFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHP-DKDVDGFHPYN----VG  129 (285)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc-ccccCccChhh----Hh
Confidence            667999999987666643    3577777777 467899999999964321  111211111 11111111110    01


Q ss_pred             eE-EE----EeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEEECCHHHHHH
Q 012352          346 KL-FG----YNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRTYDRARE  419 (465)
Q Consensus       346 ~l-~G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg-~g~ai~~~L~~~G~~v~i~~R~~~~a~~  419 (465)
                      ++ .|    .-.--.|++..|+..           +.++.||+|+|+|-|. .|+-++..|.+.|+.|+++.+.....++
T Consensus       130 ~l~~~~~~~~PcTp~av~~ll~~~-----------~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~~  198 (285)
T PRK10792        130 RLAQRIPLLRPCTPRGIMTLLERY-----------GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLRH  198 (285)
T ss_pred             HHhCCCCCCCCCCHHHHHHHHHHc-----------CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHHH
Confidence            11 11    112246677766653           2578999999999997 9999999999999999999876544444


Q ss_pred             HH
Q 012352          420 LA  421 (465)
Q Consensus       420 la  421 (465)
                      ..
T Consensus       199 ~~  200 (285)
T PRK10792        199 HV  200 (285)
T ss_pred             HH
Confidence            33

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.63  E-value=0.00014  Score=68.95  Aligned_cols=76  Identities=20%  Similarity=0.265  Sum_probs=53.4

Q ss_pred             CcccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHH-HHHHHHHHHCCcccchh--cccccCCCCeeEEEecCC
Q 012352          374 GVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYD-RARELAETVGGHALSLA--DLENFNPEDGMILANTTS  450 (465)
Q Consensus       374 ~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~-~a~~la~~~~~~~~~~~--~l~~~~~~~~DilInaT~  450 (465)
                      |.+.++++|+|+|+|+|.+|...+..|.+.|++|+|++++.. ...++++. +  .+.+.  ......+.++|+||.||+
T Consensus         3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~-~--~i~~~~~~~~~~~l~~adlViaaT~   79 (202)
T PRK06718          3 PLMIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEE-G--KIRWKQKEFEPSDIVDAFLVIAATN   79 (202)
T ss_pred             ceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhC-C--CEEEEecCCChhhcCCceEEEEcCC
Confidence            445788999999999999999999999999999999998753 33445443 1  11221  111113567888888886


Q ss_pred             CC
Q 012352          451 IG  452 (465)
Q Consensus       451 ~g  452 (465)
                      -.
T Consensus        80 d~   81 (202)
T PRK06718         80 DP   81 (202)
T ss_pred             CH
Confidence            43

>PRK07063 short chain dehydrogenase; Provisional

Probab=97.62  E-value=0.00019  Score=69.71  Aligned_cols=76  Identities=28%  Similarity=0.333  Sum_probs=57.1

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-----cc----cchhc---cccc------C
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-----HA----LSLAD---LENF------N  438 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-----~~----~~~~~---l~~~------~  438 (465)
                      .+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++++++..     ..    .++.+   +.+.      .
T Consensus         4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   83 (260)
T PRK07063          4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA   83 (260)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            367899999998 5999999999999999999999999998888777632     11    12211   1110      2


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|+|||+++...
T Consensus        84 ~g~id~li~~ag~~~   98 (260)
T PRK07063         84 FGPLDVLVNNAGINV   98 (260)
T ss_pred             hCCCcEEEECCCcCC
Confidence            457899999998753

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.61  E-value=0.00015  Score=70.64  Aligned_cols=73  Identities=18%  Similarity=0.216  Sum_probs=52.0

Q ss_pred             ccCCcEEEEEccc---hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-c--c--cchh---cc-------cccCC
Q 012352          378 ALAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-H--A--LSLA---DL-------ENFNP  439 (465)
Q Consensus       378 ~l~~k~vlV~GaG---g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-~--~--~~~~---~l-------~~~~~  439 (465)
                      .+++|+++|+|++   |+|++++.+|++.|++|+++.|+. +.++..+++.. .  .  .|+.   ++       .+ ..
T Consensus         4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~-~~   81 (252)
T PRK06079          4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQKLVDEEDLLVECDVASDESIERAFATIKE-RV   81 (252)
T ss_pred             ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHH-Hh
Confidence            3678999999985   999999999999999999999984 44444444422 1  1  2221   11       11 34


Q ss_pred             CCeeEEEecCCCC
Q 012352          440 EDGMILANTTSIG  452 (465)
Q Consensus       440 ~~~DilInaT~~g  452 (465)
                      ++.|++||+++..
T Consensus        82 g~iD~lv~nAg~~   94 (252)
T PRK06079         82 GKIDGIVHAIAYA   94 (252)
T ss_pred             CCCCEEEEccccc
Confidence            6799999999865

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.61  E-value=0.00017  Score=71.19  Aligned_cols=75  Identities=19%  Similarity=0.273  Sum_probs=54.3

Q ss_pred             cccCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEECCH---HHHHHHHHHHCCc-c--cchh---cc-------ccc
Q 012352          377 SALAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTY---DRARELAETVGGH-A--LSLA---DL-------ENF  437 (465)
Q Consensus       377 ~~l~~k~vlV~Ga---Gg~g~ai~~~L~~~G~~v~i~~R~~---~~a~~la~~~~~~-~--~~~~---~l-------~~~  437 (465)
                      .-+++|.++|+|+   +|+|++++..|++.|++|++..|+.   +++++++++++.. .  .|+.   ++       .+ 
T Consensus         6 ~~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~-   84 (272)
T PRK08159          6 GLMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEK-   84 (272)
T ss_pred             ccccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHH-
Confidence            3467899999998   5999999999999999999988873   4556666665531 1  2221   11       12 


Q ss_pred             CCCCeeEEEecCCCC
Q 012352          438 NPEDGMILANTTSIG  452 (465)
Q Consensus       438 ~~~~~DilInaT~~g  452 (465)
                      ..+..|++||++++.
T Consensus        85 ~~g~iD~lv~nAG~~   99 (272)
T PRK08159         85 KWGKLDFVVHAIGFS   99 (272)
T ss_pred             hcCCCcEEEECCccc
Confidence            346799999999875

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.60  E-value=0.00064  Score=67.51  Aligned_cols=132  Identities=21%  Similarity=0.306  Sum_probs=83.7

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHH--hhhccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v--~~~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      .+.++++|++.....+..    +++.+.++.+ .++++.|+.|.+|.-..+  ...++.+++ .+.+...+..-    -|
T Consensus        60 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p-~KDVDGl~~~N----~g  134 (287)
T PRK14176         60 HKACERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDP-AKDADGFHPYN----MG  134 (287)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCc-cccccccChhh----hh
Confidence            567999999987666654    2577777777 577899999999965322  111222221 11111111110    01


Q ss_pred             eEE-EE----eccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEEECCHHHHHH
Q 012352          346 KLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRTYDRARE  419 (465)
Q Consensus       346 ~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg-~g~ai~~~L~~~G~~v~i~~R~~~~a~~  419 (465)
                      +++ |.    -.--.|++..|+..           +.++.||+|+|+|-|. .|+-++..|.+.|+.|+++.......++
T Consensus       135 ~l~~g~~~~~PcTp~av~~ll~~~-----------~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~~  203 (287)
T PRK14176        135 KLMIGDEGLVPCTPHGVIRALEEY-----------GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKK  203 (287)
T ss_pred             hHhcCCCCCCCCcHHHHHHHHHHc-----------CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHHH
Confidence            111 11    11246677767653           2678999999999997 9999999999999999999865444333


Q ss_pred             H
Q 012352          420 L  420 (465)
Q Consensus       420 l  420 (465)
                      .
T Consensus       204 ~  204 (287)
T PRK14176        204 Y  204 (287)
T ss_pred             H
Confidence            3

>PRK07825 short chain dehydrogenase; Provisional

Probab=97.59  E-value=0.00032  Score=68.75  Aligned_cols=74  Identities=31%  Similarity=0.371  Sum_probs=56.8

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC-Ccc--cchhc----------ccccCCCCeeE
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG-GHA--LSLAD----------LENFNPEDGMI  444 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~-~~~--~~~~~----------l~~~~~~~~Di  444 (465)
                      +++++++|+|+ ||+|++++..|++.|++|+++.|+.++.+++.+.++ ...  .|+.+          +.+ ..+..|+
T Consensus         3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~id~   81 (273)
T PRK07825          3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEA-DLGPIDV   81 (273)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHH-HcCCCCE
Confidence            46789999998 599999999999999999999999999888877665 211  23221          111 2357899


Q ss_pred             EEecCCCCC
Q 012352          445 LANTTSIGM  453 (465)
Q Consensus       445 lInaT~~gm  453 (465)
                      +||+++...
T Consensus        82 li~~ag~~~   90 (273)
T PRK07825         82 LVNNAGVMP   90 (273)
T ss_pred             EEECCCcCC
Confidence            999998764

>PRK06720 hypothetical protein; Provisional

Probab=97.59  E-value=0.00027  Score=65.11  Aligned_cols=77  Identities=25%  Similarity=0.387  Sum_probs=56.4

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH---CCcc----cch---hcccc------cCC
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHA----LSL---ADLEN------FNP  439 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~---~~~~----~~~---~~l~~------~~~  439 (465)
                      ..+++|.++|+|++ |+|++++..|.+.|++|++++|+.+.++..++++   +...    .++   +++.+      ...
T Consensus        12 ~~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~   91 (169)
T PRK06720         12 MKLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAF   91 (169)
T ss_pred             cccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            34678999999996 8999999999999999999999988877766655   2211    122   11111      034


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      ++.|++||++++..
T Consensus        92 G~iDilVnnAG~~~  105 (169)
T PRK06720         92 SRIDMLFQNAGLYK  105 (169)
T ss_pred             CCCCEEEECCCcCC
Confidence            67999999988654

>PRK05717 oxidoreductase; Validated

Probab=97.59  E-value=0.00021  Score=69.28  Aligned_cols=76  Identities=26%  Similarity=0.364  Sum_probs=57.2

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---c----ccc--CCCCe
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---L----ENF--NPEDG  442 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l----~~~--~~~~~  442 (465)
                      ..+++|+++|+|+ |++|++++..|.+.|++|++++|+.++..++.+.++...    .++.+   +    .+.  ..+..
T Consensus         6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   85 (255)
T PRK05717          6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRL   85 (255)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            5678999999998 699999999999999999999999888888777665321    22211   1    110  23568


Q ss_pred             eEEEecCCCC
Q 012352          443 MILANTTSIG  452 (465)
Q Consensus       443 DilInaT~~g  452 (465)
                      |+|||+++..
T Consensus        86 d~li~~ag~~   95 (255)
T PRK05717         86 DALVCNAAIA   95 (255)
T ss_pred             CEEEECCCcc
Confidence            9999999865

>PRK05866 short chain dehydrogenase; Provisional

Probab=97.58  E-value=0.00015  Score=72.46  Aligned_cols=78  Identities=29%  Similarity=0.394  Sum_probs=58.4

Q ss_pred             ccccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Cc--c--cchhc---cccc------C
Q 012352          376 SSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GH--A--LSLAD---LENF------N  438 (465)
Q Consensus       376 ~~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~--~--~~~~~---l~~~------~  438 (465)
                      ...+++|+++|+|+ ||+|++++..|++.|++|++++|+.++++++.+++.   ..  .  .|+.+   +.+.      .
T Consensus        35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~  114 (293)
T PRK05866         35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKR  114 (293)
T ss_pred             CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            34577899999998 699999999999999999999999999888877652   11  1  12211   1110      2


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|+|||+++.+.
T Consensus       115 ~g~id~li~~AG~~~  129 (293)
T PRK05866        115 IGGVDILINNAGRSI  129 (293)
T ss_pred             cCCCCEEEECCCCCC
Confidence            457899999998764

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.57  E-value=9.2e-05  Score=61.04  Aligned_cols=66  Identities=30%  Similarity=0.408  Sum_probs=50.5

Q ss_pred             EEEEEccchhHHHHHHHHHHCC---CeEEEE-ECCHHHHHHHHHHHCCccc--chhcccccCCCCeeEEEecCCCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKG---ARVVIA-NRTYDRARELAETVGGHAL--SLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G---~~v~i~-~R~~~~a~~la~~~~~~~~--~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ++.|+|+|.+|.+++..|.+.|   .+|+++ +|+++++++++++++....  +..++    ..++|+||.|.+-.
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~----~~~advvilav~p~   72 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEA----AQEADVVILAVKPQ   72 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHH----HHHTSEEEE-S-GG
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHh----hccCCEEEEEECHH
Confidence            4778899999999999999999   689966 9999999999999875432  22222    23579999988654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.57  E-value=0.00016  Score=73.61  Aligned_cols=73  Identities=29%  Similarity=0.420  Sum_probs=58.7

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHH-CCC-eEEEEECCHHHHHHHHHHHC-CcccchhcccccCCCCeeEEEecCCCC
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKA-KGA-RVVIANRTYDRARELAETVG-GHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~-~G~-~v~i~~R~~~~a~~la~~~~-~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      .++++|+|+|+|| |.+|+.++..|.. .|+ ++++++|+.+++..+++++. ....+   +.+ .+.++|+||.+|+..
T Consensus       151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~---l~~-~l~~aDiVv~~ts~~  226 (340)
T PRK14982        151 IDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILS---LEE-ALPEADIVVWVASMP  226 (340)
T ss_pred             cCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHh---HHH-HHccCCEEEECCcCC
Confidence            4688999999999 6899999999975 466 99999999999999998875 22223   333 456789999999875


Q ss_pred             C
Q 012352          453 M  453 (465)
Q Consensus       453 m  453 (465)
                      .
T Consensus       227 ~  227 (340)
T PRK14982        227 K  227 (340)
T ss_pred             c
Confidence            4

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.56  E-value=0.00046  Score=69.03  Aligned_cols=127  Identities=22%  Similarity=0.299  Sum_probs=79.1

Q ss_pred             HHHHHHcCCCeeEeccc--c--ccHHHHHHHh-hcCCCCeeEeccCchHHH--hhhccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLL--V--DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~--~--~~l~~~~~~l-~~~~~~G~~vT~P~K~~v--~~~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      -+.++++|++..-..++  +  +++.+.++.+ .++++.|+.|..|+-..+  ...++.+++ .+.+...+.+-    -|
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p-~KDVDGl~~~n----~g  128 (296)
T PRK14188         54 GKQTKEAGMASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDP-EKDVDGLHVVN----AG  128 (296)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCc-ccccccCChhh----HH
Confidence            56789999997644443  2  3577777777 577899999999964221  111211111 11111111110    01


Q ss_pred             eEE-E----EeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEc-cchhHHHHHHHHHHCCCeEEEE-ECCHH
Q 012352          346 KLF-G----YNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIG-AGGAGKALAYGAKAKGARVVIA-NRTYD  415 (465)
Q Consensus       346 ~l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~G-aGg~g~ai~~~L~~~G~~v~i~-~R~~~  415 (465)
                      ++. |    .-.--.|++.-|+..           +.+++||+|+|+| +|-+|+.++..|.+.|+.|++| +|+..
T Consensus       129 ~l~~~~~~~~PcTp~ai~~ll~~~-----------~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~  194 (296)
T PRK14188        129 RLATGETALVPCTPLGCMMLLRRV-----------HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRD  194 (296)
T ss_pred             HHhCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCC
Confidence            111 1    011146666666653           2578999999999 6789999999999999999999 58753

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.56  E-value=0.00048  Score=68.46  Aligned_cols=129  Identities=19%  Similarity=0.256  Sum_probs=81.8

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHHh--hhccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAV--KCCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v~--~~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      -+.++++|++.....++-    +++.+.++.+ .++++.|+.|..|.-..+-  ..++.+++ .+.+...+..-    -|
T Consensus        54 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p-~KDVDGl~~~n----~g  128 (285)
T PRK14189         54 VKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAP-EKDVDGFHVAN----AG  128 (285)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCc-ccCcccCChhh----hh
Confidence            567999999987666653    3577777777 5678999999999742211  11212211 11122222110    11


Q ss_pred             eEE-EE----eccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchh-HHHHHHHHHHCCCeEEEEECCHHHH
Q 012352          346 KLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGA-GKALAYGAKAKGARVVIANRTYDRA  417 (465)
Q Consensus       346 ~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~-g~ai~~~L~~~G~~v~i~~R~~~~a  417 (465)
                      +++ |.    -.--.|++.-|+..           +.++.||+|+|+|.|++ |+-++..|.++|+.|+++.+.....
T Consensus       129 ~l~~~~~~~~PcTp~aii~lL~~~-----------~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l  195 (285)
T PRK14189        129 ALMTGQPLFRPCTPYGVMKMLESI-----------GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDL  195 (285)
T ss_pred             HhhCCCCCCcCCCHHHHHHHHHHc-----------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCH
Confidence            121 11    11246666666653           36789999999999987 9999999999999999997654333

>PRK07060 short chain dehydrogenase; Provisional

Probab=97.55  E-value=0.00033  Score=67.14  Aligned_cols=77  Identities=31%  Similarity=0.365  Sum_probs=58.3

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchhc---cccc--CCCCeeEEEec
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLAD---LENF--NPEDGMILANT  448 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~~---l~~~--~~~~~DilIna  448 (465)
                      .++++++++|+|+ |++|+.++..|++.|++|++++|+.++.+++.+..+...  .++.+   +.+.  .....|+|||+
T Consensus         5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~   84 (245)
T PRK07060          5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNC   84 (245)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEEC
Confidence            4567899999998 699999999999999999999999999888887765432  22222   1110  23468999999


Q ss_pred             CCCCC
Q 012352          449 TSIGM  453 (465)
Q Consensus       449 T~~gm  453 (465)
                      ++...
T Consensus        85 ag~~~   89 (245)
T PRK07060         85 AGIAS   89 (245)
T ss_pred             CCCCC
Confidence            98754

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.55  E-value=0.0002  Score=72.25  Aligned_cols=72  Identities=24%  Similarity=0.377  Sum_probs=54.9

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCCcc--------cchhcccccCCCCeeEEEecCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGHA--------LSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~~~--------~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      ++|.|+|+|++|+++++.|+..|.  +|++++|++++++.++.++....        +...+. + .+.++|+||+|++.
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~-~l~~aDIVIitag~   78 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-S-DCKDADIVVITAGA   78 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-H-HhCCCCEEEEccCC
Confidence            479999999999999999999994  89999999999998888763210        111111 2 34679999999987


Q ss_pred             CCCC
Q 012352          452 GMQP  455 (465)
Q Consensus       452 gm~~  455 (465)
                      ...|
T Consensus        79 ~~~~   82 (306)
T cd05291          79 PQKP   82 (306)
T ss_pred             CCCC
Confidence            6443

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK06194 hypothetical protein; Provisional

Probab=97.55  E-value=0.00029  Score=69.49  Aligned_cols=75  Identities=25%  Similarity=0.355  Sum_probs=55.4

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchh---ccccc------CCCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLA---DLENF------NPED  441 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~---~l~~~------~~~~  441 (465)
                      +++|++||+|+ ||+|++++..|.+.|++|++++|+.++.+++.+++.   ...    .++.   ++.+.      ..+.
T Consensus         4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~   83 (287)
T PRK06194          4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGA   83 (287)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            56789999998 699999999999999999999999888877776653   111    1221   12110      2356


Q ss_pred             eeEEEecCCCCC
Q 012352          442 GMILANTTSIGM  453 (465)
Q Consensus       442 ~DilInaT~~gm  453 (465)
                      .|+|||+++...
T Consensus        84 id~vi~~Ag~~~   95 (287)
T PRK06194         84 VHLLFNNAGVGA   95 (287)
T ss_pred             CCEEEECCCCCC
Confidence            899999998754

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=97.54  E-value=0.00031  Score=73.68  Aligned_cols=70  Identities=30%  Similarity=0.348  Sum_probs=53.2

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      ..+.+++|+|+|.|.+|+.++..|...|++|+++++++.++...+. .+....+++   + .+.++|++|++|+.
T Consensus       208 ~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~-~G~~v~~l~---e-al~~aDVVI~aTG~  277 (425)
T PRK05476        208 VLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM-DGFRVMTME---E-AAELGDIFVTATGN  277 (425)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh-cCCEecCHH---H-HHhCCCEEEECCCC
Confidence            3468999999999999999999999999999999999988655433 243333333   2 23467888888853

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.54  E-value=0.0003  Score=68.36  Aligned_cols=76  Identities=25%  Similarity=0.346  Sum_probs=51.7

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHH-HHHHHHHHHCCcc----cchh---ccccc------CCCCe
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYD-RARELAETVGGHA----LSLA---DLENF------NPEDG  442 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~-~a~~la~~~~~~~----~~~~---~l~~~------~~~~~  442 (465)
                      ++++|+++|+|++ |+|++++..|++.|++|++++|+.. +..+..+..+.+.    .|+.   ++..+      ..+..
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   84 (251)
T PRK12481          5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHI   84 (251)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence            4678999999985 9999999999999999999998643 2233333333221    1221   11110      34678


Q ss_pred             eEEEecCCCCC
Q 012352          443 MILANTTSIGM  453 (465)
Q Consensus       443 DilInaT~~gm  453 (465)
                      |++||+++...
T Consensus        85 D~lv~~ag~~~   95 (251)
T PRK12481         85 DILINNAGIIR   95 (251)
T ss_pred             CEEEECCCcCC
Confidence            99999998754

>PRK08589 short chain dehydrogenase; Validated

Probab=97.54  E-value=0.00028  Score=69.42  Aligned_cols=72  Identities=25%  Similarity=0.396  Sum_probs=54.1

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---c-------cccCCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---L-------ENFNPE  440 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l-------~~~~~~  440 (465)
                      +++|++||+|+ ||+|++++..|++.|++|++++|+ ++.+++++++.   ...    .|+.+   +       .+ ..+
T Consensus         4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-~~g   81 (272)
T PRK08589          4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKE-QFG   81 (272)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHH-HcC
Confidence            56899999999 599999999999999999999999 77777766652   111    12211   1       11 346


Q ss_pred             CeeEEEecCCCC
Q 012352          441 DGMILANTTSIG  452 (465)
Q Consensus       441 ~~DilInaT~~g  452 (465)
                      ..|+|||+++..
T Consensus        82 ~id~li~~Ag~~   93 (272)
T PRK08589         82 RVDVLFNNAGVD   93 (272)
T ss_pred             CcCEEEECCCCC
Confidence            789999999875

>PRK06500 short chain dehydrogenase; Provisional

Probab=97.53  E-value=0.00032  Score=67.42  Aligned_cols=74  Identities=22%  Similarity=0.203  Sum_probs=56.5

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchh---cc-------cccCCCCee
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLA---DL-------ENFNPEDGM  443 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~---~l-------~~~~~~~~D  443 (465)
                      +.+|+++|+|+ |++|++++..|.+.|++|++++|+.++.+++.++++...    .++.   ++       .+ ..+..|
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~id   82 (249)
T PRK06500          4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAE-AFGRLD   82 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHH-HhCCCC
Confidence            46789999998 699999999999999999999999888888877776432    1221   11       11 245789


Q ss_pred             EEEecCCCCC
Q 012352          444 ILANTTSIGM  453 (465)
Q Consensus       444 ilInaT~~gm  453 (465)
                      +|||+++...
T Consensus        83 ~vi~~ag~~~   92 (249)
T PRK06500         83 AVFINAGVAK   92 (249)
T ss_pred             EEEECCCCCC
Confidence            9999997653

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=97.52  E-value=0.00034  Score=68.80  Aligned_cols=77  Identities=29%  Similarity=0.360  Sum_probs=57.8

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchh---ccccc------CC
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLA---DLENF------NP  439 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~---~l~~~------~~  439 (465)
                      .++++|+++|+|+ ||+|++++..|++.|++|++++|+.++++++.+++.   ...    .++.   ++...      ..
T Consensus         6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (278)
T PRK08277          6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDF   85 (278)
T ss_pred             eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            4577899999998 599999999999999999999999988888877653   111    1221   11110      24


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +..|+|||+++...
T Consensus        86 g~id~li~~ag~~~   99 (278)
T PRK08277         86 GPCDILINGAGGNH   99 (278)
T ss_pred             CCCCEEEECCCCCC
Confidence            67899999998654

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=97.52  E-value=0.00023  Score=70.72  Aligned_cols=73  Identities=30%  Similarity=0.408  Sum_probs=55.6

Q ss_pred             CcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc--------ccch-------hcccc-cCCCCee
Q 012352          381 GKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH--------ALSL-------ADLEN-FNPEDGM  443 (465)
Q Consensus       381 ~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~--------~~~~-------~~l~~-~~~~~~D  443 (465)
                      ++=++|+|++ |+||+-+..|+++|.+|++++||++|.+++++++..+        .+|+       +.+.+ ...-.+-
T Consensus        49 g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~Vg  128 (312)
T KOG1014|consen   49 GSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDVG  128 (312)
T ss_pred             CCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCceE
Confidence            4679999997 9999999999999999999999999999999888532        1233       22222 1123466


Q ss_pred             EEEecCCCCC
Q 012352          444 ILANTTSIGM  453 (465)
Q Consensus       444 ilInaT~~gm  453 (465)
                      +|||+.+...
T Consensus       129 ILVNNvG~~~  138 (312)
T KOG1014|consen  129 ILVNNVGMSY  138 (312)
T ss_pred             EEEecccccC
Confidence            8999977664

>PRK07109 short chain dehydrogenase; Provisional

Probab=97.52  E-value=0.00031  Score=71.61  Aligned_cols=76  Identities=24%  Similarity=0.344  Sum_probs=57.1

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchh---ccccc------CCC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLA---DLENF------NPE  440 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~---~l~~~------~~~  440 (465)
                      .+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++.   ...    .|+.   ++.+.      ..+
T Consensus         5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g   84 (334)
T PRK07109          5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELG   84 (334)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence            466899999998 599999999999999999999999998888776652   221    1221   11110      346


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|++||+++...
T Consensus        85 ~iD~lInnAg~~~   97 (334)
T PRK07109         85 PIDTWVNNAMVTV   97 (334)
T ss_pred             CCCEEEECCCcCC
Confidence            7899999998764

>PRK06057 short chain dehydrogenase; Provisional

Probab=97.51  E-value=0.00031  Score=68.16  Aligned_cols=74  Identities=30%  Similarity=0.410  Sum_probs=55.9

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchhc---cccc------CCCCeeEEE
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLAD---LENF------NPEDGMILA  446 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~~---l~~~------~~~~~DilI  446 (465)
                      +++|+++|+|+ ||+|++++..|+++|++|+++.|+..+.+++.++++...  .++.+   +...      ..++.|+||
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi   84 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDIAF   84 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            67899999999 699999999999999999999999988887777664322  12211   1110      235689999


Q ss_pred             ecCCCC
Q 012352          447 NTTSIG  452 (465)
Q Consensus       447 naT~~g  452 (465)
                      |+++..
T Consensus        85 ~~ag~~   90 (255)
T PRK06057         85 NNAGIS   90 (255)
T ss_pred             ECCCcC
Confidence            998764

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.51  E-value=0.00026  Score=69.23  Aligned_cols=74  Identities=22%  Similarity=0.304  Sum_probs=53.9

Q ss_pred             ccCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEECC---HHHHHHHHHHHC-Ccc----cchhc---c-------cc
Q 012352          378 ALAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRT---YDRARELAETVG-GHA----LSLAD---L-------EN  436 (465)
Q Consensus       378 ~l~~k~vlV~Ga---Gg~g~ai~~~L~~~G~~v~i~~R~---~~~a~~la~~~~-~~~----~~~~~---l-------~~  436 (465)
                      ++++|.++|+|+   +|+|+++++.|++.|++|++++|+   .++.+++++++. ...    .|+.+   +       .+
T Consensus         4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~   83 (257)
T PRK08594          4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKE   83 (257)
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHH
Confidence            467899999997   599999999999999999998764   456677777663 221    22211   1       12


Q ss_pred             cCCCCeeEEEecCCCC
Q 012352          437 FNPEDGMILANTTSIG  452 (465)
Q Consensus       437 ~~~~~~DilInaT~~g  452 (465)
                       ..+..|++||+++..
T Consensus        84 -~~g~ld~lv~nag~~   98 (257)
T PRK08594         84 -EVGVIHGVAHCIAFA   98 (257)
T ss_pred             -hCCCccEEEECcccC
Confidence             347799999999764

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.50  E-value=0.00026  Score=68.02  Aligned_cols=74  Identities=34%  Similarity=0.469  Sum_probs=55.0

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC--Cc--c--cchh---ccccc------CCCCe
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG--GH--A--LSLA---DLENF------NPEDG  442 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~--~~--~--~~~~---~l~~~------~~~~~  442 (465)
                      +++++++|+|+ |++|++++..|.+.|++|+++.|+.++.+++.+.+.  ..  .  .++.   ++...      ..+..
T Consensus         3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   82 (251)
T PRK07231          3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSV   82 (251)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            56789999998 699999999999999999999999998888777654  11  1  1221   11110      23568


Q ss_pred             eEEEecCCCC
Q 012352          443 MILANTTSIG  452 (465)
Q Consensus       443 DilInaT~~g  452 (465)
                      |+||++++..
T Consensus        83 d~vi~~ag~~   92 (251)
T PRK07231         83 DILVNNAGTT   92 (251)
T ss_pred             CEEEECCCCC
Confidence            9999999764

>PRK07478 short chain dehydrogenase; Provisional

Probab=97.50  E-value=0.00029  Score=68.21  Aligned_cols=74  Identities=27%  Similarity=0.303  Sum_probs=56.0

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---c-------cccCC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---L-------ENFNP  439 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l-------~~~~~  439 (465)
                      .+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++.   ...    .++.+   +       .+ ..
T Consensus         3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~   81 (254)
T PRK07478          3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVE-RF   81 (254)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH-hc
Confidence            356899999998 599999999999999999999999999888877663   111    12211   1       11 24


Q ss_pred             CCeeEEEecCCCC
Q 012352          440 EDGMILANTTSIG  452 (465)
Q Consensus       440 ~~~DilInaT~~g  452 (465)
                      +..|+|||+++..
T Consensus        82 ~~id~li~~ag~~   94 (254)
T PRK07478         82 GGLDIAFNNAGTL   94 (254)
T ss_pred             CCCCEEEECCCCC
Confidence            5789999999864

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.50  E-value=0.00024  Score=69.30  Aligned_cols=74  Identities=19%  Similarity=0.221  Sum_probs=54.2

Q ss_pred             cCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEECCH--HHHHHHHHHHCCc--c--cchh---cc-------cccCC
Q 012352          379 LAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTY--DRARELAETVGGH--A--LSLA---DL-------ENFNP  439 (465)
Q Consensus       379 l~~k~vlV~Ga---Gg~g~ai~~~L~~~G~~v~i~~R~~--~~a~~la~~~~~~--~--~~~~---~l-------~~~~~  439 (465)
                      +++|+++|+|+   +|+|++++..|++.|++|++++|+.  +..++++++++..  .  .|+.   ++       .+ ..
T Consensus         5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~-~~   83 (256)
T PRK07889          5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVRE-HV   83 (256)
T ss_pred             ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHH-Hc
Confidence            56899999996   5999999999999999999998763  5566777666432  1  2221   11       11 34


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +..|++||++++..
T Consensus        84 g~iD~li~nAG~~~   97 (256)
T PRK07889         84 DGLDGVVHSIGFAP   97 (256)
T ss_pred             CCCcEEEEcccccc
Confidence            67999999998763

>PRK06949 short chain dehydrogenase; Provisional

Probab=97.50  E-value=0.0004  Score=67.17  Aligned_cols=77  Identities=30%  Similarity=0.453  Sum_probs=57.4

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Cc--c--cchh---ccccc------CC
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GH--A--LSLA---DLENF------NP  439 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~--~--~~~~---~l~~~------~~  439 (465)
                      .++++|+++|+|+ |++|++++..|++.|++|+++.|+.++.+++.+++.   ..  .  .++.   ++.+.      ..
T Consensus         5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (258)
T PRK06949          5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEA   84 (258)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            4577899999998 699999999999999999999999999888877652   11  1  1221   11110      23


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +..|+|||+++...
T Consensus        85 ~~~d~li~~ag~~~   98 (258)
T PRK06949         85 GTIDILVNNSGVST   98 (258)
T ss_pred             CCCCEEEECCCCCC
Confidence            56899999998754

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=97.49  E-value=0.00042  Score=67.24  Aligned_cols=73  Identities=37%  Similarity=0.405  Sum_probs=56.4

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchh---cc-------cccCCCCee
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLA---DL-------ENFNPEDGM  443 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~---~l-------~~~~~~~~D  443 (465)
                      +.+|+++|+|+ |++|++++..|++.|++|++++|+.++.+++.++++...    .++.   ++       .+ ..+..|
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~id   82 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVE-RFGGID   82 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHH-HcCCCC
Confidence            56789999998 699999999999999999999999999888887765321    1221   11       11 245789


Q ss_pred             EEEecCCCC
Q 012352          444 ILANTTSIG  452 (465)
Q Consensus       444 ilInaT~~g  452 (465)
                      ++||+++..
T Consensus        83 ~li~~ag~~   91 (257)
T PRK07067         83 ILFNNAALF   91 (257)
T ss_pred             EEEECCCcC
Confidence            999998865

>PRK06197 short chain dehydrogenase; Provisional

Probab=97.49  E-value=0.00027  Score=70.73  Aligned_cols=77  Identities=29%  Similarity=0.374  Sum_probs=56.0

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC-----Cc--c--cchhc---ccc----c--
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG-----GH--A--LSLAD---LEN----F--  437 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~-----~~--~--~~~~~---l~~----~--  437 (465)
                      .++++|+++|+|+ ||+|++++..|++.|++|+++.|+.+++++..+++.     ..  .  .++.+   +..    .  
T Consensus        12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~   91 (306)
T PRK06197         12 PDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRA   91 (306)
T ss_pred             ccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence            3567899999998 699999999999999999999999988776655442     11  1  12221   111    0  


Q ss_pred             CCCCeeEEEecCCCCC
Q 012352          438 NPEDGMILANTTSIGM  453 (465)
Q Consensus       438 ~~~~~DilInaT~~gm  453 (465)
                      ..+..|+|||+++...
T Consensus        92 ~~~~iD~li~nAg~~~  107 (306)
T PRK06197         92 AYPRIDLLINNAGVMY  107 (306)
T ss_pred             hCCCCCEEEECCcccc
Confidence            2457899999998753

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.49  E-value=0.00024  Score=65.84  Aligned_cols=72  Identities=25%  Similarity=0.302  Sum_probs=49.2

Q ss_pred             ccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       376 ~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      +..+.++++.|+|.|.+|++++..|..+|++|+.++|+....... ...+.   .+.++++ .+.++|+|+++.|..
T Consensus        31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~-~~~~~---~~~~l~e-ll~~aDiv~~~~plt  102 (178)
T PF02826_consen   31 GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGA-DEFGV---EYVSLDE-LLAQADIVSLHLPLT  102 (178)
T ss_dssp             BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHH-HHTTE---EESSHHH-HHHH-SEEEE-SSSS
T ss_pred             ccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhc-ccccc---eeeehhh-hcchhhhhhhhhccc
Confidence            467899999999999999999999999999999999998765422 12221   2222333 234577888877753

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PLN02253 xanthoxin dehydrogenase

Probab=97.49  E-value=0.00033  Score=68.91  Aligned_cols=75  Identities=21%  Similarity=0.337  Sum_probs=56.3

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC--c--c--cchhc---cccc------CCCC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG--H--A--LSLAD---LENF------NPED  441 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~--~--~--~~~~~---l~~~------~~~~  441 (465)
                      .+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.++++.  .  .  .|+.+   +.+.      ..++
T Consensus        15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~   94 (280)
T PLN02253         15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGT   94 (280)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            467899999998 5999999999999999999999998888888777642  1  1  12211   1110      2357


Q ss_pred             eeEEEecCCCC
Q 012352          442 GMILANTTSIG  452 (465)
Q Consensus       442 ~DilInaT~~g  452 (465)
                      .|+|||+++..
T Consensus        95 id~li~~Ag~~  105 (280)
T PLN02253         95 LDIMVNNAGLT  105 (280)
T ss_pred             CCEEEECCCcC
Confidence            89999999764

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.49  E-value=0.00033  Score=68.52  Aligned_cols=74  Identities=23%  Similarity=0.256  Sum_probs=51.6

Q ss_pred             ccCCcEEEEEccc---hhHHHHHHHHHHCCCeEEEEECCHH---HHHHHHHHHCCcc---cchhc---c-------cccC
Q 012352          378 ALAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYD---RARELAETVGGHA---LSLAD---L-------ENFN  438 (465)
Q Consensus       378 ~l~~k~vlV~GaG---g~g~ai~~~L~~~G~~v~i~~R~~~---~a~~la~~~~~~~---~~~~~---l-------~~~~  438 (465)
                      .+++|.++|+|++   |+|++++..|++.|++|++..|+..   .++++.++++...   .|+.+   +       .+ .
T Consensus         5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~-~   83 (260)
T PRK06603          5 LLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKE-K   83 (260)
T ss_pred             ccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHH-H
Confidence            3678999999995   7999999999999999999988842   3344444433211   22211   1       11 3


Q ss_pred             CCCeeEEEecCCCC
Q 012352          439 PEDGMILANTTSIG  452 (465)
Q Consensus       439 ~~~~DilInaT~~g  452 (465)
                      .+..|++||+++..
T Consensus        84 ~g~iDilVnnag~~   97 (260)
T PRK06603         84 WGSFDFLLHGMAFA   97 (260)
T ss_pred             cCCccEEEEccccC
Confidence            56799999998764

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=97.49  E-value=0.00041  Score=67.15  Aligned_cols=76  Identities=28%  Similarity=0.357  Sum_probs=56.7

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC---cc----cchhc---cccc------CC
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG---HA----LSLAD---LENF------NP  439 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~---~~----~~~~~---l~~~------~~  439 (465)
                      ..+++|++||+|+ ||+|++++..|++.|++|++++|+.++.+++.+++..   ..    .++.+   +.+.      ..
T Consensus         5 ~~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (254)
T PRK08085          5 FSLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDI   84 (254)
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            3467899999998 5999999999999999999999999988888776631   11    12211   1110      24


Q ss_pred             CCeeEEEecCCCC
Q 012352          440 EDGMILANTTSIG  452 (465)
Q Consensus       440 ~~~DilInaT~~g  452 (465)
                      +..|+|||+++..
T Consensus        85 ~~id~vi~~ag~~   97 (254)
T PRK08085         85 GPIDVLINNAGIQ   97 (254)
T ss_pred             CCCCEEEECCCcC
Confidence            5689999999864

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.48  E-value=0.00022  Score=69.85  Aligned_cols=74  Identities=15%  Similarity=0.251  Sum_probs=50.8

Q ss_pred             cCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEECCH---HHHHHHHHHHCCc-c--cch---hcc-------cccCC
Q 012352          379 LAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTY---DRARELAETVGGH-A--LSL---ADL-------ENFNP  439 (465)
Q Consensus       379 l~~k~vlV~Ga---Gg~g~ai~~~L~~~G~~v~i~~R~~---~~a~~la~~~~~~-~--~~~---~~l-------~~~~~  439 (465)
                      +++|.++|+|+   +|+|++++..|++.|++|++..|+.   +.++++.++++.. .  .|+   +++       .+ ..
T Consensus         4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~-~~   82 (261)
T PRK08690          4 LQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGK-HW   82 (261)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHH-Hh
Confidence            56899999994   4999999999999999999987653   3334444333321 1  122   111       11 34


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +..|++||+++++.
T Consensus        83 g~iD~lVnnAG~~~   96 (261)
T PRK08690         83 DGLDGLVHSIGFAP   96 (261)
T ss_pred             CCCcEEEECCccCC
Confidence            67999999998763

>PRK06182 short chain dehydrogenase; Validated

Probab=97.48  E-value=0.00021  Score=70.17  Aligned_cols=74  Identities=32%  Similarity=0.390  Sum_probs=53.5

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchhc---cccc------CCCCeeEEEe
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLAD---LENF------NPEDGMILAN  447 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~~---l~~~------~~~~~DilIn  447 (465)
                      ++|+++|+|+ ||+|++++..|.+.|++|+++.|+.++.+++... +...  .|+.+   +...      ..++.|+|||
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~   80 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASL-GVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVN   80 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhC-CCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            3689999998 6999999999999999999999999887776532 2221  12211   1110      2357899999


Q ss_pred             cCCCCCC
Q 012352          448 TTSIGMQ  454 (465)
Q Consensus       448 aT~~gm~  454 (465)
                      +++.+..
T Consensus        81 ~ag~~~~   87 (273)
T PRK06182         81 NAGYGSY   87 (273)
T ss_pred             CCCcCCC
Confidence            9987643

>PRK12367 short chain dehydrogenase; Provisional

Probab=97.47  E-value=0.00025  Score=69.09  Aligned_cols=75  Identities=25%  Similarity=0.264  Sum_probs=51.3

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cch---hcccccCCCCeeEEEecCC
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSL---ADLENFNPEDGMILANTTS  450 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~---~~l~~~~~~~~DilInaT~  450 (465)
                      ..+++|+++|+|+ ||+|++++..|++.|++|++++|+...............  .++   +++.+ ..++.|++||+++
T Consensus        10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~iDilVnnAG   88 (245)
T PRK12367         10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDK-QLASLDVLILNHG   88 (245)
T ss_pred             HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHH-hcCCCCEEEECCc
Confidence            4577899999998 599999999999999999999998632211111111111  122   22333 4567999999998


Q ss_pred             CC
Q 012352          451 IG  452 (465)
Q Consensus       451 ~g  452 (465)
                      .+
T Consensus        89 ~~   90 (245)
T PRK12367         89 IN   90 (245)
T ss_pred             cC
Confidence            75

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=97.47  E-value=0.00038  Score=70.27  Aligned_cols=74  Identities=23%  Similarity=0.284  Sum_probs=55.6

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC---c--c--cchhc---cccc------CCCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG---H--A--LSLAD---LENF------NPED  441 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~---~--~--~~~~~---l~~~------~~~~  441 (465)
                      ..+|+++|+|+ ||+|++++..|++.|++|++++|+.++++++.+++..   .  .  .++.+   +.++      ....
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~   83 (322)
T PRK07453          4 DAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKP   83 (322)
T ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence            45789999998 6999999999999999999999999999888877631   1  1  12221   1110      2246


Q ss_pred             eeEEEecCCCC
Q 012352          442 GMILANTTSIG  452 (465)
Q Consensus       442 ~DilInaT~~g  452 (465)
                      .|+|||++++.
T Consensus        84 iD~li~nAg~~   94 (322)
T PRK07453         84 LDALVCNAAVY   94 (322)
T ss_pred             ccEEEECCccc
Confidence            89999999864

>PRK07791 short chain dehydrogenase; Provisional

Probab=97.44  E-value=0.00045  Score=68.66  Aligned_cols=74  Identities=31%  Similarity=0.419  Sum_probs=54.5

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCH---------HHHHHHHHHHC---Ccc----cchh---cc----
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTY---------DRARELAETVG---GHA----LSLA---DL----  434 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~---------~~a~~la~~~~---~~~----~~~~---~l----  434 (465)
                      +++|+++|+|++ |+|++++..|++.|++|++++|+.         ++.+++++++.   ...    .|+.   ++    
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~   83 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV   83 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence            568999999985 999999999999999999998875         66777776663   111    1221   11    


Q ss_pred             ---cccCCCCeeEEEecCCCCC
Q 012352          435 ---ENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       435 ---~~~~~~~~DilInaT~~gm  453 (465)
                         .+ ..+..|+|||++++..
T Consensus        84 ~~~~~-~~g~id~lv~nAG~~~  104 (286)
T PRK07791         84 DAAVE-TFGGLDVLVNNAGILR  104 (286)
T ss_pred             HHHHH-hcCCCCEEEECCCCCC
Confidence               11 3467899999998753

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=97.44  E-value=0.00023  Score=71.71  Aligned_cols=45  Identities=24%  Similarity=0.298  Sum_probs=38.5

Q ss_pred             cccCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Q 012352          377 SALAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTYDRARELAE  422 (465)
Q Consensus       377 ~~l~~k~vlV~Ga---Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~  422 (465)
                      .++++|.+||+|+   .|+|++++..|++.|++|++ .|+.++.+++++
T Consensus         5 ~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~   52 (303)
T PLN02730          5 IDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFET   52 (303)
T ss_pred             cCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHH
Confidence            5588999999999   69999999999999999988 777666666553

>PLN02780 ketoreductase/ oxidoreductase

Probab=97.43  E-value=0.00023  Score=72.14  Aligned_cols=45  Identities=27%  Similarity=0.564  Sum_probs=41.4

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV  424 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~  424 (465)
                      .|+.++|+|+ ||+|++++..|++.|++|++++|++++.+++++++
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l   97 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSI   97 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Confidence            5799999998 59999999999999999999999999999887765

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.43  E-value=0.00032  Score=63.81  Aligned_cols=74  Identities=23%  Similarity=0.269  Sum_probs=51.0

Q ss_pred             CcccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCC
Q 012352          374 GVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       374 ~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~  450 (465)
                      |...++++|+|+|+|+|.+|..-+..|.+.|++|+|++.+  ..+++.+ ++......+.+.+..+.++|+||.+|.
T Consensus         6 P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~-l~~i~~~~~~~~~~dl~~a~lViaaT~   79 (157)
T PRK06719          6 PLMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKE-LPYITWKQKTFSNDDIKDAHLIYAATN   79 (157)
T ss_pred             ceEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHh-ccCcEEEecccChhcCCCceEEEECCC
Confidence            4567899999999999999999999999999999999643  3344433 321111111222213567888888875

>PRK09242 tropinone reductase; Provisional

Probab=97.42  E-value=0.00044  Score=67.08  Aligned_cols=76  Identities=25%  Similarity=0.318  Sum_probs=57.6

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC-----Ccc----cchhc----------ccc
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG-----GHA----LSLAD----------LEN  436 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~-----~~~----~~~~~----------l~~  436 (465)
                      +.+++|+++|+|+ ||+|++++..|.+.|++|++++|+.++.+++.+++.     ...    .++.+          +.+
T Consensus         5 ~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   84 (257)
T PRK09242          5 WRLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVED   84 (257)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            4577899999998 599999999999999999999999998888876652     111    12211          112


Q ss_pred             cCCCCeeEEEecCCCCC
Q 012352          437 FNPEDGMILANTTSIGM  453 (465)
Q Consensus       437 ~~~~~~DilInaT~~gm  453 (465)
                       ..+..|+|||+++...
T Consensus        85 -~~g~id~li~~ag~~~  100 (257)
T PRK09242         85 -HWDGLHILVNNAGGNI  100 (257)
T ss_pred             -HcCCCCEEEECCCCCC
Confidence             3467899999998753

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.41  E-value=0.00035  Score=68.41  Aligned_cols=73  Identities=22%  Similarity=0.281  Sum_probs=51.9

Q ss_pred             cCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEEC---CHHHHHHHHHHHCCc-c--cchh---cc-------cccCC
Q 012352          379 LAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANR---TYDRARELAETVGGH-A--LSLA---DL-------ENFNP  439 (465)
Q Consensus       379 l~~k~vlV~Ga---Gg~g~ai~~~L~~~G~~v~i~~R---~~~~a~~la~~~~~~-~--~~~~---~l-------~~~~~  439 (465)
                      +++|+++|+|+   +|+|++++..|++.|++|++..|   +.++.+++.++++.. .  .|+.   ++       .+ ..
T Consensus         4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~-~~   82 (260)
T PRK06997          4 LAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQ-HW   82 (260)
T ss_pred             cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHH-Hh
Confidence            56899999994   59999999999999999998864   355666666655421 1  2221   11       11 34


Q ss_pred             CCeeEEEecCCCC
Q 012352          440 EDGMILANTTSIG  452 (465)
Q Consensus       440 ~~~DilInaT~~g  452 (465)
                      +..|++||+++..
T Consensus        83 g~iD~lvnnAG~~   95 (260)
T PRK06997         83 DGLDGLVHSIGFA   95 (260)
T ss_pred             CCCcEEEEccccC
Confidence            6799999999875

>PRK06180 short chain dehydrogenase; Provisional

Probab=97.41  E-value=0.00053  Score=67.53  Aligned_cols=73  Identities=27%  Similarity=0.340  Sum_probs=54.1

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---cccc------CCCCeeEEE
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---LENF------NPEDGMILA  446 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~DilI  446 (465)
                      +|+++|+|+ ||+|++++..|++.|++|+++.|+.++.+.+.+..+...    .++.+   +.+.      ..+..|+||
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~vv   83 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDVLV   83 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence            578999998 699999999999999999999999998887766543321    12211   1110      235689999


Q ss_pred             ecCCCCC
Q 012352          447 NTTSIGM  453 (465)
Q Consensus       447 naT~~gm  453 (465)
                      |+++...
T Consensus        84 ~~ag~~~   90 (277)
T PRK06180         84 NNAGYGH   90 (277)
T ss_pred             ECCCccC
Confidence            9998754

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.41  E-value=0.00025  Score=67.18  Aligned_cols=71  Identities=21%  Similarity=0.299  Sum_probs=52.2

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECC-------------------HHHHHHHHHHHCC--ccc-------
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT-------------------YDRARELAETVGG--HAL-------  429 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~-------------------~~~a~~la~~~~~--~~~-------  429 (465)
                      +.+++|+|+|+||+|..++..|+..|+ ++++++++                   ..|++.+++++..  ..+       
T Consensus        19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~   98 (202)
T TIGR02356        19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE   98 (202)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence            567899999999999999999999998 99999987                   3566666666531  011       


Q ss_pred             --chhcccccCCCCeeEEEecCC
Q 012352          430 --SLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       430 --~~~~l~~~~~~~~DilInaT~  450 (465)
                        +.+++.+ .+.++|+||+|+.
T Consensus        99 ~i~~~~~~~-~~~~~D~Vi~~~d  120 (202)
T TIGR02356        99 RVTAENLEL-LINNVDLVLDCTD  120 (202)
T ss_pred             cCCHHHHHH-HHhCCCEEEECCC
Confidence              1112222 3567899999974

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK12742 oxidoreductase; Provisional

Probab=97.39  E-value=0.0007  Score=64.60  Aligned_cols=75  Identities=28%  Similarity=0.366  Sum_probs=53.8

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEEC-CHHHHHHHHHHHCCcc--cchhc---cccc--CCCCeeEEEecC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYDRARELAETVGGHA--LSLAD---LENF--NPEDGMILANTT  449 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R-~~~~a~~la~~~~~~~--~~~~~---l~~~--~~~~~DilInaT  449 (465)
                      +++|+++|+|+ ||+|++++..|++.|++|++..| +.++.+++.++++...  .++.+   +.+.  ..+..|+|||++
T Consensus         4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~a   83 (237)
T PRK12742          4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVVNA   83 (237)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEECC
Confidence            56899999998 69999999999999998877754 6777777777665332  22211   1110  235689999999


Q ss_pred             CCCC
Q 012352          450 SIGM  453 (465)
Q Consensus       450 ~~gm  453 (465)
                      +...
T Consensus        84 g~~~   87 (237)
T PRK12742         84 GIAV   87 (237)
T ss_pred             CCCC
Confidence            8653

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.39  E-value=0.00053  Score=67.61  Aligned_cols=73  Identities=22%  Similarity=0.283  Sum_probs=53.3

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchhc---cc-------ccCCCCeeEEEe
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLAD---LE-------NFNPEDGMILAN  447 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~~---l~-------~~~~~~~DilIn  447 (465)
                      +|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+. +...  .|+.+   +.       +...+..|+|||
T Consensus         4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~-~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li~   82 (277)
T PRK05993          4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAE-GLEAFQLDYAEPESIAALVAQVLELSGGRLDALFN   82 (277)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC-CceEEEccCCCHHHHHHHHHHHHHHcCCCccEEEE
Confidence            578999998 6999999999999999999999999888777542 2211  22211   11       101246899999


Q ss_pred             cCCCCCC
Q 012352          448 TTSIGMQ  454 (465)
Q Consensus       448 aT~~gm~  454 (465)
                      +++.+..
T Consensus        83 ~Ag~~~~   89 (277)
T PRK05993         83 NGAYGQP   89 (277)
T ss_pred             CCCcCCC
Confidence            9987754

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=97.39  E-value=0.00038  Score=67.99  Aligned_cols=73  Identities=23%  Similarity=0.236  Sum_probs=48.9

Q ss_pred             cCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEECC------HHHHHHHHHHHCC-cc--cchhc---c-------cc
Q 012352          379 LAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRT------YDRARELAETVGG-HA--LSLAD---L-------EN  436 (465)
Q Consensus       379 l~~k~vlV~Ga---Gg~g~ai~~~L~~~G~~v~i~~R~------~~~a~~la~~~~~-~~--~~~~~---l-------~~  436 (465)
                      +++|.++|+|+   +|+|+++++.|++.|++|++..|+      .+.++++.+.... ..  .|+.+   +       .+
T Consensus         4 l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~   83 (258)
T PRK07370          4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQ   83 (258)
T ss_pred             cCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHH
Confidence            56899999997   499999999999999999888653      2333334333221 11  22211   1       11


Q ss_pred             cCCCCeeEEEecCCCC
Q 012352          437 FNPEDGMILANTTSIG  452 (465)
Q Consensus       437 ~~~~~~DilInaT~~g  452 (465)
                       ..+..|++||+++..
T Consensus        84 -~~g~iD~lv~nag~~   98 (258)
T PRK07370         84 -KWGKLDILVHCLAFA   98 (258)
T ss_pred             -HcCCCCEEEEccccc
Confidence             346799999999865

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.38  E-value=0.00034  Score=75.71  Aligned_cols=73  Identities=21%  Similarity=0.210  Sum_probs=55.4

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC--------------cc--cchh---cccccC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG--------------HA--LSLA---DLENFN  438 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~--------------~~--~~~~---~l~~~~  438 (465)
                      .++|.++|+|+ |++|++++..|++.|++|+++.|+.++++.+.+.+..              ..  .++.   ++.+ .
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~-a  156 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP-A  156 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH-H
Confidence            45789999998 7999999999999999999999999998877654311              11  1222   2223 4


Q ss_pred             CCCeeEEEecCCCC
Q 012352          439 PEDGMILANTTSIG  452 (465)
Q Consensus       439 ~~~~DilInaT~~g  452 (465)
                      ++++|+|||+++..
T Consensus       157 LggiDiVVn~AG~~  170 (576)
T PLN03209        157 LGNASVVICCIGAS  170 (576)
T ss_pred             hcCCCEEEEccccc
Confidence            67899999998765

>PRK07774 short chain dehydrogenase; Provisional

Probab=97.38  E-value=0.00055  Score=65.89  Aligned_cols=74  Identities=30%  Similarity=0.380  Sum_probs=54.5

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Cc--c--cchhc---ccc----c--CCCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GH--A--LSLAD---LEN----F--NPED  441 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~--~--~~~~~---l~~----~--~~~~  441 (465)
                      +++|+++|+|+ |++|++++..|.+.|++|++++|+.++.+.+.+++.   ..  .  .++.+   +.+    .  ..+.
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (250)
T PRK07774          4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGG   83 (250)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            56899999998 799999999999999999999999887777766552   11  1  12211   110    0  2356


Q ss_pred             eeEEEecCCCC
Q 012352          442 GMILANTTSIG  452 (465)
Q Consensus       442 ~DilInaT~~g  452 (465)
                      .|+|||+++..
T Consensus        84 id~vi~~ag~~   94 (250)
T PRK07774         84 IDYLVNNAAIY   94 (250)
T ss_pred             CCEEEECCCCc
Confidence            89999999875

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=97.37  E-value=0.00046  Score=67.27  Aligned_cols=74  Identities=22%  Similarity=0.398  Sum_probs=52.9

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEE-CCHHHHHHHHHHHC----Cc--c--cchhc---c-------cc
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIAN-RTYDRARELAETVG----GH--A--LSLAD---L-------EN  436 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~-R~~~~a~~la~~~~----~~--~--~~~~~---l-------~~  436 (465)
                      ..+++|+++|+|++ |+|++++..|++.|++|+++. |+.++++++++++.    ..  .  .|+.+   +       .+
T Consensus         4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   83 (260)
T PRK08416          4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDE   83 (260)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            35778999999995 999999999999999988875 56777776665542    11  1  12211   1       11


Q ss_pred             cCCCCeeEEEecCCC
Q 012352          437 FNPEDGMILANTTSI  451 (465)
Q Consensus       437 ~~~~~~DilInaT~~  451 (465)
                       ..+..|+|||+++.
T Consensus        84 -~~g~id~lv~nAg~   97 (260)
T PRK08416         84 -DFDRVDFFISNAII   97 (260)
T ss_pred             -hcCCccEEEECccc
Confidence             34678999999875

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=97.37  E-value=0.00083  Score=64.25  Aligned_cols=76  Identities=29%  Similarity=0.427  Sum_probs=56.7

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchh---ccccc------CCCCee
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLA---DLENF------NPEDGM  443 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~---~l~~~------~~~~~D  443 (465)
                      ++++++++|+|+ |++|++++..|.+.|+.|++..|+.++.+++.+.++...    .++.   ++.+.      ..+..|
T Consensus         3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   82 (245)
T PRK12936          3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVD   82 (245)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            356789999997 699999999999999999999999999888877664321    1221   11110      245789


Q ss_pred             EEEecCCCCC
Q 012352          444 ILANTTSIGM  453 (465)
Q Consensus       444 ilInaT~~gm  453 (465)
                      +|||+++...
T Consensus        83 ~vi~~ag~~~   92 (245)
T PRK12936         83 ILVNNAGITK   92 (245)
T ss_pred             EEEECCCCCC
Confidence            9999998753

>PRK06484 short chain dehydrogenase; Validated

Probab=97.36  E-value=0.00048  Score=74.11  Aligned_cols=75  Identities=27%  Similarity=0.403  Sum_probs=57.9

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchh---ccccc------CCCCee
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLA---DLENF------NPEDGM  443 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~---~l~~~------~~~~~D  443 (465)
                      ...+|.++|+|++ |+|++++..|++.|++|++++|+.++.+++.++++...    .++.   ++.++      ..+..|
T Consensus       266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id  345 (520)
T PRK06484        266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLD  345 (520)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            3568999999985 99999999999999999999999999999888776432    2221   11110      346789


Q ss_pred             EEEecCCCC
Q 012352          444 ILANTTSIG  452 (465)
Q Consensus       444 ilInaT~~g  452 (465)
                      +|||+++..
T Consensus       346 ~li~nAg~~  354 (520)
T PRK06484        346 VLVNNAGIA  354 (520)
T ss_pred             EEEECCCCc
Confidence            999999864

>PRK06125 short chain dehydrogenase; Provisional

Probab=97.36  E-value=0.00075  Score=65.58  Aligned_cols=75  Identities=31%  Similarity=0.357  Sum_probs=55.9

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC----Ccc----cchhc---cccc--CCCCee
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG----GHA----LSLAD---LENF--NPEDGM  443 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~----~~~----~~~~~---l~~~--~~~~~D  443 (465)
                      .+++|+++|+|+ ||+|++++..|++.|++|++++|+.++++++.+++.    ...    .++.+   +.+.  ..+..|
T Consensus         4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   83 (259)
T PRK06125          4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDID   83 (259)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence            357899999999 599999999999999999999999998888766553    111    12221   1110  346789


Q ss_pred             EEEecCCCC
Q 012352          444 ILANTTSIG  452 (465)
Q Consensus       444 ilInaT~~g  452 (465)
                      ++||+++..
T Consensus        84 ~lv~~ag~~   92 (259)
T PRK06125         84 ILVNNAGAI   92 (259)
T ss_pred             EEEECCCCC
Confidence            999998764

>PRK08251 short chain dehydrogenase; Provisional

Probab=97.36  E-value=0.00059  Score=65.66  Aligned_cols=73  Identities=23%  Similarity=0.321  Sum_probs=54.2

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-----cc----cchhc---c-------cccCCC
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-----HA----LSLAD---L-------ENFNPE  440 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-----~~----~~~~~---l-------~~~~~~  440 (465)
                      +|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+.+..     ..    .|+.+   +       .+ ..+
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~   80 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRD-ELG   80 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHH-HcC
Confidence            578999987 6999999999999999999999999988877665421     11    12211   1       11 345


Q ss_pred             CeeEEEecCCCCCC
Q 012352          441 DGMILANTTSIGMQ  454 (465)
Q Consensus       441 ~~DilInaT~~gm~  454 (465)
                      ..|++||+++++..
T Consensus        81 ~id~vi~~ag~~~~   94 (248)
T PRK08251         81 GLDRVIVNAGIGKG   94 (248)
T ss_pred             CCCEEEECCCcCCC
Confidence            78999999987643

>PRK08303 short chain dehydrogenase; Provisional

Probab=97.36  E-value=0.00046  Score=69.49  Aligned_cols=73  Identities=33%  Similarity=0.453  Sum_probs=52.2

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCH----------HHHHHHHHHH---CCcc----cch---hcc--
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTY----------DRARELAETV---GGHA----LSL---ADL--  434 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~----------~~a~~la~~~---~~~~----~~~---~~l--  434 (465)
                      .+++|.++|+|++ |+|++++.+|++.|++|++++|+.          ++.+++++++   +...    .|+   +++  
T Consensus         5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~   84 (305)
T PRK08303          5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRA   84 (305)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence            4678999999995 999999999999999999999973          4555555544   2211    122   111  


Q ss_pred             -----cccCCCCeeEEEecC-CC
Q 012352          435 -----ENFNPEDGMILANTT-SI  451 (465)
Q Consensus       435 -----~~~~~~~~DilInaT-~~  451 (465)
                           .+ ..+..|++||++ +.
T Consensus        85 ~~~~~~~-~~g~iDilVnnA~g~  106 (305)
T PRK08303         85 LVERIDR-EQGRLDILVNDIWGG  106 (305)
T ss_pred             HHHHHHH-HcCCccEEEECCccc
Confidence                 11 346789999998 64

>PRK06940 short chain dehydrogenase; Provisional

Probab=97.36  E-value=0.00061  Score=67.28  Aligned_cols=71  Identities=24%  Similarity=0.365  Sum_probs=52.1

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---cccc-----CCCCeeEE
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---LENF-----NPEDGMIL  445 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l~~~-----~~~~~Dil  445 (465)
                      +|.++|+|+||+|++++..|. .|++|++++|+.++.+++.+++.   ...    .|+.+   +...     ..+..|+|
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l   80 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTGL   80 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence            478999999999999999996 79999999999988887776653   111    12211   1110     23578999


Q ss_pred             EecCCCC
Q 012352          446 ANTTSIG  452 (465)
Q Consensus       446 InaT~~g  452 (465)
                      ||++++.
T Consensus        81 i~nAG~~   87 (275)
T PRK06940         81 VHTAGVS   87 (275)
T ss_pred             EECCCcC
Confidence            9999865

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.36  E-value=0.0027  Score=63.13  Aligned_cols=131  Identities=19%  Similarity=0.252  Sum_probs=82.3

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHH--hhhccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v--~~~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      .+.++++|++.....+.-    +++.+.++.+ .++.+.|+.|.+|.-..+  ...++.+++ .+.+...+..-    -|
T Consensus        53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p-~KDVDGl~~~n----~g  127 (285)
T PRK14191         53 IKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDP-NKDVDGFHPLN----IG  127 (285)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCc-cccccccChhh----HH
Confidence            667999999987666653    2577777777 577899999999964211  111222222 11222222110    01


Q ss_pred             eE-EEE----eccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHH
Q 012352          346 KL-FGY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARE  419 (465)
Q Consensus       346 ~l-~G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~  419 (465)
                      ++ .|.    -.--.|++.-|+..           +.++.||+|+|+|.| -.|+-++..|.+.|+.|+++........+
T Consensus       128 ~l~~g~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~  196 (285)
T PRK14191        128 KLCSQLDGFVPATPMGVMRLLKHY-----------HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSF  196 (285)
T ss_pred             HHhcCCCCCCCCcHHHHHHHHHHh-----------CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHH
Confidence            11 111    12245666666653           257899999999999 79999999999999999999654444333

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.36  E-value=0.00041  Score=65.35  Aligned_cols=74  Identities=23%  Similarity=0.248  Sum_probs=58.5

Q ss_pred             CCcEEEEEcc--chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cch---h-------cccccCCCCeeEE
Q 012352          380 AGKLFVVIGA--GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSL---A-------DLENFNPEDGMIL  445 (465)
Q Consensus       380 ~~k~vlV~Ga--Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~---~-------~l~~~~~~~~Dil  445 (465)
                      +.|.|+|+|+  ||+|.+++..+++.|+.|+-+.|..++..+|+.+++-..  .|+   +       ++..+..+..|++
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~L   85 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDLL   85 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEEE
Confidence            3588999998  799999999999999999999999999999998887432  122   1       1222245789999


Q ss_pred             EecCCCCC
Q 012352          446 ANTTSIGM  453 (465)
Q Consensus       446 InaT~~gm  453 (465)
                      +|++|..-
T Consensus        86 ~NNAG~~C   93 (289)
T KOG1209|consen   86 YNNAGQSC   93 (289)
T ss_pred             EcCCCCCc
Confidence            99998764

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.35  E-value=0.00078  Score=70.50  Aligned_cols=70  Identities=30%  Similarity=0.388  Sum_probs=55.0

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      ..+.|++|+|+|+|.+|+.++..+...|++|+++++++.++. .+..++...+..+   + .+..+|++|.||+.
T Consensus       198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~-~A~~~G~~~~~~~---e-~v~~aDVVI~atG~  267 (413)
T cd00401         198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICAL-QAAMEGYEVMTME---E-AVKEGDIFVTTTGN  267 (413)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHH-HHHhcCCEEccHH---H-HHcCCCEEEECCCC
Confidence            457899999999999999999999999999999999998865 4555665433332   2 23467999999864

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=97.34  E-value=0.00035  Score=73.13  Aligned_cols=75  Identities=27%  Similarity=0.271  Sum_probs=53.5

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC--cc--cchh---cccccCCCCeeEEEecC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG--HA--LSLA---DLENFNPEDGMILANTT  449 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~--~~--~~~~---~l~~~~~~~~DilInaT  449 (465)
                      .+++|+++|+|+ ||+|++++..|.+.|++|++++|+.++.++.......  ..  .++.   ++.+ .+++.|++||++
T Consensus       175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~-~l~~IDiLInnA  253 (406)
T PRK07424        175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAE-LLEKVDILIINH  253 (406)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHH-HhCCCCEEEECC
Confidence            467899999998 6999999999999999999999988766443322111  11  1222   2223 356799999999


Q ss_pred             CCCC
Q 012352          450 SIGM  453 (465)
Q Consensus       450 ~~gm  453 (465)
                      +.+.
T Consensus       254 Gi~~  257 (406)
T PRK07424        254 GINV  257 (406)
T ss_pred             CcCC
Confidence            8754

>PRK06484 short chain dehydrogenase; Validated

Probab=97.34  E-value=0.00048  Score=74.17  Aligned_cols=71  Identities=28%  Similarity=0.485  Sum_probs=56.2

Q ss_pred             CCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---c-------cccCCCCeeE
Q 012352          380 AGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---L-------ENFNPEDGMI  444 (465)
Q Consensus       380 ~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l-------~~~~~~~~Di  444 (465)
                      ++|+++|+|++ |+|++++..|+++|++|++++|+.++.+++.++++...    .|+.+   +       .+ ..+..|+
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~g~iD~   82 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHR-EFGRIDV   82 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHH-HhCCCCE
Confidence            57899999985 99999999999999999999999999998888875432    22211   1       11 3467899


Q ss_pred             EEecCCC
Q 012352          445 LANTTSI  451 (465)
Q Consensus       445 lInaT~~  451 (465)
                      |||+++.
T Consensus        83 li~nag~   89 (520)
T PRK06484         83 LVNNAGV   89 (520)
T ss_pred             EEECCCc
Confidence            9999876

>PRK09072 short chain dehydrogenase; Provisional

Probab=97.33  E-value=0.0008  Score=65.55  Aligned_cols=75  Identities=28%  Similarity=0.368  Sum_probs=55.1

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC--c--c--cchhc---cccc-----CCCCee
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG--H--A--LSLAD---LENF-----NPEDGM  443 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~--~--~--~~~~~---l~~~-----~~~~~D  443 (465)
                      +++++++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++..  .  .  .|+.+   +.+.     ..+..|
T Consensus         3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id   82 (263)
T PRK09072          3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGIN   82 (263)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCC
Confidence            46789999997 6999999999999999999999999988888776521  1  1  12211   1110     135689


Q ss_pred             EEEecCCCCC
Q 012352          444 ILANTTSIGM  453 (465)
Q Consensus       444 ilInaT~~gm  453 (465)
                      +||++++...
T Consensus        83 ~lv~~ag~~~   92 (263)
T PRK09072         83 VLINNAGVNH   92 (263)
T ss_pred             EEEECCCCCC
Confidence            9999987653

>PRK07890 short chain dehydrogenase; Provisional

Probab=97.32  E-value=0.0006  Score=65.96  Aligned_cols=72  Identities=33%  Similarity=0.383  Sum_probs=54.5

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchh---cc-------cccCCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLA---DL-------ENFNPE  440 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~---~l-------~~~~~~  440 (465)
                      +.+|+++|+|+ ||+|++++..|+++|++|++++|+.++.+++.+++.   ...    .++.   ++       .+ ..+
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~g   81 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALE-RFG   81 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHH-HcC
Confidence            45789999998 599999999999999999999999998888877663   111    1221   11       11 246


Q ss_pred             CeeEEEecCCC
Q 012352          441 DGMILANTTSI  451 (465)
Q Consensus       441 ~~DilInaT~~  451 (465)
                      ..|+|||+++.
T Consensus        82 ~~d~vi~~ag~   92 (258)
T PRK07890         82 RVDALVNNAFR   92 (258)
T ss_pred             CccEEEECCcc
Confidence            78999999865

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=97.32  E-value=0.00088  Score=64.44  Aligned_cols=74  Identities=30%  Similarity=0.392  Sum_probs=50.7

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHH-HHHHHHHHHCCcc----cchh---ccc-------ccCCCCe
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYD-RARELAETVGGHA----LSLA---DLE-------NFNPEDG  442 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~-~a~~la~~~~~~~----~~~~---~l~-------~~~~~~~  442 (465)
                      +++|+++|+|+ ||+|++++..|.+.|++|++++|+.. +..+...+.+...    .++.   ++.       + ..+..
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~~   81 (248)
T TIGR01832         3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVE-EFGHI   81 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH-HcCCC
Confidence            67899999998 59999999999999999999999753 2222222333221    1221   111       1 23578


Q ss_pred             eEEEecCCCCC
Q 012352          443 MILANTTSIGM  453 (465)
Q Consensus       443 DilInaT~~gm  453 (465)
                      |+|||+++...
T Consensus        82 d~li~~ag~~~   92 (248)
T TIGR01832        82 DILVNNAGIIR   92 (248)
T ss_pred             CEEEECCCCCC
Confidence            99999998754

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=97.31  E-value=0.0011  Score=64.73  Aligned_cols=75  Identities=25%  Similarity=0.259  Sum_probs=56.7

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---c-------cccC
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---L-------ENFN  438 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l-------~~~~  438 (465)
                      .++.+|+++|+|++ ++|++++..|++.|++|++.+|+.++.+++.+.+.   ...    .++.+   +       .+ .
T Consensus         6 ~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-~   84 (265)
T PRK07097          6 FSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEK-E   84 (265)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH-h
Confidence            45778999999995 99999999999999999999999988887776652   111    12211   1       11 3


Q ss_pred             CCCeeEEEecCCCC
Q 012352          439 PEDGMILANTTSIG  452 (465)
Q Consensus       439 ~~~~DilInaT~~g  452 (465)
                      .+..|+||++++..
T Consensus        85 ~~~id~li~~ag~~   98 (265)
T PRK07097         85 VGVIDILVNNAGII   98 (265)
T ss_pred             CCCCCEEEECCCCC
Confidence            45689999999875

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=97.31  E-value=0.00037  Score=62.70  Aligned_cols=71  Identities=28%  Similarity=0.372  Sum_probs=52.9

Q ss_pred             cEEEEEccc-hhHHHHHHHHHHCCC-eEEEEECC--HHHHHHHHHHHC---Ccc----cchh---cc-------cccCCC
Q 012352          382 KLFVVIGAG-GAGKALAYGAKAKGA-RVVIANRT--YDRARELAETVG---GHA----LSLA---DL-------ENFNPE  440 (465)
Q Consensus       382 k~vlV~GaG-g~g~ai~~~L~~~G~-~v~i~~R~--~~~a~~la~~~~---~~~----~~~~---~l-------~~~~~~  440 (465)
                      |+++|+|++ |+|++++.+|.+.|. +|+++.|+  .++.+++.+++.   ...    .|+.   ++       .+ ..+
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~   79 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIK-RFG   79 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHH-HHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence            689999985 999999999999987 89999999  788888877664   211    1211   11       11 245


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|++||+++..-
T Consensus        80 ~ld~li~~ag~~~   92 (167)
T PF00106_consen   80 PLDILINNAGIFS   92 (167)
T ss_dssp             SESEEEEECSCTT
T ss_pred             ccccccccccccc
Confidence            7999999998764

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK06138 short chain dehydrogenase; Provisional

Probab=97.31  E-value=0.00085  Score=64.56  Aligned_cols=74  Identities=34%  Similarity=0.481  Sum_probs=55.0

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC--Ccc----cchh---ccccc------CCCCe
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG--GHA----LSLA---DLENF------NPEDG  442 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~--~~~----~~~~---~l~~~------~~~~~  442 (465)
                      +++|+++|+|+ |++|++++..|.+.|++|+++.|+.++.++..+.+.  ...    .++.   ++.+.      ..+..
T Consensus         3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i   82 (252)
T PRK06138          3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRL   82 (252)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            56899999998 599999999999999999999999988887776652  111    1221   11110      23578


Q ss_pred             eEEEecCCCC
Q 012352          443 MILANTTSIG  452 (465)
Q Consensus       443 DilInaT~~g  452 (465)
                      |+|||+++..
T Consensus        83 d~vi~~ag~~   92 (252)
T PRK06138         83 DVLVNNAGFG   92 (252)
T ss_pred             CEEEECCCCC
Confidence            9999999864

>PRK07814 short chain dehydrogenase; Provisional

Probab=97.31  E-value=0.00088  Score=65.41  Aligned_cols=75  Identities=33%  Similarity=0.363  Sum_probs=56.4

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Cc--c--cchhc---c-------cccCC
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GH--A--LSLAD---L-------ENFNP  439 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~--~--~~~~~---l-------~~~~~  439 (465)
                      ++++++++|+|++ |+|++++..|.++|++|+++.|+.++.+++.+.+.   ..  .  .++.+   +       .+ ..
T Consensus         7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~   85 (263)
T PRK07814          7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVE-AF   85 (263)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH-Hc
Confidence            4678999999985 89999999999999999999999988888776652   11  1  12211   1       11 24


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      ++.|+|||+++...
T Consensus        86 ~~id~vi~~Ag~~~   99 (263)
T PRK07814         86 GRLDIVVNNVGGTM   99 (263)
T ss_pred             CCCCEEEECCCCCC
Confidence            57899999998654

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.31  E-value=0.0008  Score=65.15  Aligned_cols=76  Identities=30%  Similarity=0.393  Sum_probs=56.3

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC---cc----cchhc---cccc------CCC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG---HA----LSLAD---LENF------NPE  440 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~---~~----~~~~~---l~~~------~~~  440 (465)
                      .+++|++||+|+ |++|++++..|++.|++|++++|++++.+++.+++..   ..    .++.+   +.+.      ..+
T Consensus         4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   83 (262)
T PRK13394          4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFG   83 (262)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            356899999999 6999999999999999999999999888887776531   11    12221   1110      235


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+||++++...
T Consensus        84 ~~d~vi~~ag~~~   96 (262)
T PRK13394         84 SVDILVSNAGIQI   96 (262)
T ss_pred             CCCEEEECCccCC
Confidence            6899999998754

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=97.30  E-value=0.00067  Score=65.99  Aligned_cols=70  Identities=26%  Similarity=0.236  Sum_probs=52.2

Q ss_pred             EEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC--c--c--cchh---ccccc------CCCCeeEEE
Q 012352          383 LFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG--H--A--LSLA---DLENF------NPEDGMILA  446 (465)
Q Consensus       383 ~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~--~--~--~~~~---~l~~~------~~~~~DilI  446 (465)
                      +++|+|++ |+|++++..|++.|++|++++|++++.+++.+++..  .  .  .|+.   ++.++      ..+..|+||
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~li   81 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDALV   81 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            68999985 999999999999999999999999988887776631  1  1  1221   11110      346789999


Q ss_pred             ecCCCC
Q 012352          447 NTTSIG  452 (465)
Q Consensus       447 naT~~g  452 (465)
                      |+++..
T Consensus        82 ~naG~~   87 (259)
T PRK08340         82 WNAGNV   87 (259)
T ss_pred             ECCCCC
Confidence            999864

>PRK07831 short chain dehydrogenase; Provisional

Probab=97.30  E-value=0.00082  Score=65.43  Aligned_cols=75  Identities=33%  Similarity=0.453  Sum_probs=54.4

Q ss_pred             ccCCcEEEEEcc-c-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH----CC-cc----cchhc---cccc------
Q 012352          378 ALAGKLFVVIGA-G-GAGKALAYGAKAKGARVVIANRTYDRARELAETV----GG-HA----LSLAD---LENF------  437 (465)
Q Consensus       378 ~l~~k~vlV~Ga-G-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~----~~-~~----~~~~~---l~~~------  437 (465)
                      .+++|+++|+|+ | |+|++++..|++.|++|++.+|+.++.++..+++    +. ..    .|+.+   +...      
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   93 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVE   93 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            356899999997 6 8999999999999999999999988877765544    21 11    12211   1110      


Q ss_pred             CCCCeeEEEecCCCC
Q 012352          438 NPEDGMILANTTSIG  452 (465)
Q Consensus       438 ~~~~~DilInaT~~g  452 (465)
                      ..+..|+|||+++..
T Consensus        94 ~~g~id~li~~ag~~  108 (262)
T PRK07831         94 RLGRLDVLVNNAGLG  108 (262)
T ss_pred             HcCCCCEEEECCCCC
Confidence            235789999999864

>PRK07035 short chain dehydrogenase; Provisional

Probab=97.30  E-value=0.00069  Score=65.42  Aligned_cols=76  Identities=28%  Similarity=0.448  Sum_probs=56.2

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Cc--c--cchh---cccc----c--CC
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GH--A--LSLA---DLEN----F--NP  439 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~--~--~~~~---~l~~----~--~~  439 (465)
                      .++++|+++|+|++ |+|++++..|.+.|++|++++|+.++.+++.+++.   ..  .  .++.   ++..    .  ..
T Consensus         4 ~~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (252)
T PRK07035          4 FDLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERH   83 (252)
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45778999999985 99999999999999999999999988888877652   11  1  1221   1111    0  24


Q ss_pred             CCeeEEEecCCCC
Q 012352          440 EDGMILANTTSIG  452 (465)
Q Consensus       440 ~~~DilInaT~~g  452 (465)
                      +..|+|||+++..
T Consensus        84 ~~id~li~~ag~~   96 (252)
T PRK07035         84 GRLDILVNNAAAN   96 (252)
T ss_pred             CCCCEEEECCCcC
Confidence            5689999998753

>PRK09186 flagellin modification protein A; Provisional

Probab=97.30  E-value=0.00064  Score=65.65  Aligned_cols=46  Identities=33%  Similarity=0.444  Sum_probs=41.1

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV  424 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~  424 (465)
                      +++|+++|+|+ ||+|++++..|.+.|++|++++|+.++++++++++
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l   48 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESL   48 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHH
Confidence            35789999998 59999999999999999999999999988877665

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=97.28  E-value=0.00084  Score=67.71  Aligned_cols=72  Identities=24%  Similarity=0.317  Sum_probs=54.5

Q ss_pred             CcEEEEEccc-hhHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHCC---c--c--cchhc---ccc----c--CCCCe
Q 012352          381 GKLFVVIGAG-GAGKALAYGAKAKG-ARVVIANRTYDRARELAETVGG---H--A--LSLAD---LEN----F--NPEDG  442 (465)
Q Consensus       381 ~k~vlV~GaG-g~g~ai~~~L~~~G-~~v~i~~R~~~~a~~la~~~~~---~--~--~~~~~---l~~----~--~~~~~  442 (465)
                      +|+++|+|++ |+|++++..|++.| ++|+++.|+.+++++++++++.   .  .  .|+.+   +.+    .  ..+..
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   82 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRPL   82 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            6799999995 99999999999999 8999999999998888877642   1  1  12211   111    0  24578


Q ss_pred             eEEEecCCCC
Q 012352          443 MILANTTSIG  452 (465)
Q Consensus       443 DilInaT~~g  452 (465)
                      |++||++++.
T Consensus        83 D~lI~nAG~~   92 (314)
T TIGR01289        83 DALVCNAAVY   92 (314)
T ss_pred             CEEEECCCcc
Confidence            9999999864

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK06114 short chain dehydrogenase; Provisional

Probab=97.28  E-value=0.0011  Score=64.39  Aligned_cols=75  Identities=31%  Similarity=0.408  Sum_probs=53.5

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHH-HHHHHHHHHC---Ccc----cchh---cc-------ccc
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYD-RARELAETVG---GHA----LSLA---DL-------ENF  437 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~-~a~~la~~~~---~~~----~~~~---~l-------~~~  437 (465)
                      .++++|+++|+|++ |+|++++..|++.|++|++++|+.+ ..+++.+++.   ...    .++.   ++       .+ 
T Consensus         4 ~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~-   82 (254)
T PRK06114          4 FDLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEA-   82 (254)
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH-
Confidence            35778999999985 9999999999999999999998753 4455555542   111    1221   11       11 


Q ss_pred             CCCCeeEEEecCCCC
Q 012352          438 NPEDGMILANTTSIG  452 (465)
Q Consensus       438 ~~~~~DilInaT~~g  452 (465)
                      ..+..|+|||+++..
T Consensus        83 ~~g~id~li~~ag~~   97 (254)
T PRK06114         83 ELGALTLAVNAAGIA   97 (254)
T ss_pred             HcCCCCEEEECCCCC
Confidence            346789999999875

>PRK08643 acetoin reductase; Validated

Probab=97.28  E-value=0.00091  Score=64.73  Aligned_cols=71  Identities=24%  Similarity=0.335  Sum_probs=53.3

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC---cc----cchhc---c-------cccCCCCe
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG---HA----LSLAD---L-------ENFNPEDG  442 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~---~~----~~~~~---l-------~~~~~~~~  442 (465)
                      +|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++..++..   ..    .++.+   +       .+ ..++.
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-~~~~i   80 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVD-TFGDL   80 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH-HcCCC
Confidence            578999988 5999999999999999999999999888887766531   11    12211   1       11 24578


Q ss_pred             eEEEecCCCC
Q 012352          443 MILANTTSIG  452 (465)
Q Consensus       443 DilInaT~~g  452 (465)
                      |+|||+++..
T Consensus        81 d~vi~~ag~~   90 (256)
T PRK08643         81 NVVVNNAGVA   90 (256)
T ss_pred             CEEEECCCCC
Confidence            9999999764

>PRK07024 short chain dehydrogenase; Provisional

Probab=97.27  E-value=0.00057  Score=66.41  Aligned_cols=73  Identities=22%  Similarity=0.285  Sum_probs=53.7

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC--c--c--cchhc---ccc----c--CCCCeeE
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG--H--A--LSLAD---LEN----F--NPEDGMI  444 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~--~--~--~~~~~---l~~----~--~~~~~Di  444 (465)
                      +++++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++..  .  .  .|+.+   +.+    .  ..+..|+
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~   81 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDV   81 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence            368999987 6999999999999999999999999998887776532  1  1  12211   111    0  2356899


Q ss_pred             EEecCCCCC
Q 012352          445 LANTTSIGM  453 (465)
Q Consensus       445 lInaT~~gm  453 (465)
                      |||+++...
T Consensus        82 lv~~ag~~~   90 (257)
T PRK07024         82 VIANAGISV   90 (257)
T ss_pred             EEECCCcCC
Confidence            999998653

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.27  E-value=0.0039  Score=61.81  Aligned_cols=133  Identities=18%  Similarity=0.257  Sum_probs=84.3

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHHh--hhccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAV--KCCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v~--~~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      .+..+++|++.....++-    +++.+.++.+ .++.+.|+.|..|.-..+-  ..++.+++ .+.+...+..-    -|
T Consensus        48 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p-~KDVDGl~~~n----~g  122 (279)
T PRK14178         48 HRACERVGIGSVGIELPGDATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILP-EKDVDGFHPLN----LG  122 (279)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCc-ccCcccCChhh----HH
Confidence            567899999987666654    2577777777 5779999999999643211  11111111 11111111110    01


Q ss_pred             eEE-EE----eccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHH
Q 012352          346 KLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARE  419 (465)
Q Consensus       346 ~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~  419 (465)
                      +++ |.    -.--.|++.-|+..           +.+++||+|+|+|-| -.|+.++..|...|+.|+++.++....++
T Consensus       123 ~l~~~~~~~~PcTp~av~~ll~~~-----------~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~  191 (279)
T PRK14178        123 RLVSGLPGFAPCTPNGIMTLLHEY-----------KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKA  191 (279)
T ss_pred             HHhCCCCCCCCCCHHHHHHHHHHc-----------CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHH
Confidence            111 10    11245666666652           267899999999999 79999999999999999999887655444


Q ss_pred             HH
Q 012352          420 LA  421 (465)
Q Consensus       420 la  421 (465)
                      ..
T Consensus       192 ~~  193 (279)
T PRK14178        192 EL  193 (279)
T ss_pred             HH
Confidence            33

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=97.26  E-value=0.00097  Score=64.74  Aligned_cols=77  Identities=29%  Similarity=0.299  Sum_probs=56.0

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Cc--c--cchhc---ccc----c--CC
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GH--A--LSLAD---LEN----F--NP  439 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~--~--~~~~~---l~~----~--~~  439 (465)
                      ..+++|+++|+|+ |++|++++..|.+.|++|+++.|+.++.+.+.+.+.   ..  .  .++.+   +..    .  ..
T Consensus         8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~   87 (259)
T PRK08213          8 FDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERF   87 (259)
T ss_pred             hCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            3467899999997 699999999999999999999999988877766553   11  1  12221   110    0  23


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +..|+||++++...
T Consensus        88 ~~id~vi~~ag~~~  101 (259)
T PRK08213         88 GHVDILVNNAGATW  101 (259)
T ss_pred             CCCCEEEECCCCCC
Confidence            56899999998643

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.26  E-value=0.001  Score=63.65  Aligned_cols=75  Identities=27%  Similarity=0.359  Sum_probs=54.9

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC---cc----cchh---ccccc------CCCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG---HA----LSLA---DLENF------NPED  441 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~---~~----~~~~---~l~~~------~~~~  441 (465)
                      +++++++|+|+ |++|++++..|++.|++|++++|+.++.+++.+++..   ..    .++.   ++.+.      ..+.
T Consensus         5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (239)
T PRK07666          5 LQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGS   84 (239)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            56789999998 5999999999999999999999999888777665531   11    1221   11110      2357


Q ss_pred             eeEEEecCCCCC
Q 012352          442 GMILANTTSIGM  453 (465)
Q Consensus       442 ~DilInaT~~gm  453 (465)
                      .|+|||+++...
T Consensus        85 id~vi~~ag~~~   96 (239)
T PRK07666         85 IDILINNAGISK   96 (239)
T ss_pred             ccEEEEcCcccc
Confidence            899999998764

>PRK07326 short chain dehydrogenase; Provisional

Probab=97.24  E-value=0.00086  Score=63.97  Aligned_cols=75  Identities=24%  Similarity=0.337  Sum_probs=55.4

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC----cc--cchhc---ccc----c--CCCCe
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG----HA--LSLAD---LEN----F--NPEDG  442 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~----~~--~~~~~---l~~----~--~~~~~  442 (465)
                      +.+++++|+|+ |++|++++..|.+.|++|++++|++++.+++.+.+..    ..  .++.+   +.+    .  ..+.+
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   83 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGL   83 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            45789999998 6899999999999999999999999988888777642    11  12211   111    0  23578


Q ss_pred             eEEEecCCCCC
Q 012352          443 MILANTTSIGM  453 (465)
Q Consensus       443 DilInaT~~gm  453 (465)
                      |+|||+++.+.
T Consensus        84 d~vi~~ag~~~   94 (237)
T PRK07326         84 DVLIANAGVGH   94 (237)
T ss_pred             CEEEECCCCCC
Confidence            99999987654

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.24  E-value=0.001  Score=64.68  Aligned_cols=76  Identities=24%  Similarity=0.312  Sum_probs=53.0

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH---CCcc----cchhc---cccc------CC
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHA----LSLAD---LENF------NP  439 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~---~~~~----~~~~~---l~~~------~~  439 (465)
                      ..+++|++||+|++ |+|++++..|++.|++|+++.|+ ++.+++.+.+   +...    .++.+   +..+      ..
T Consensus        11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~   89 (258)
T PRK06935         11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEF   89 (258)
T ss_pred             ccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45788999999995 99999999999999999999998 5555554443   2211    12211   1110      24


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +..|++||+++...
T Consensus        90 g~id~li~~ag~~~  103 (258)
T PRK06935         90 GKIDILVNNAGTIR  103 (258)
T ss_pred             CCCCEEEECCCCCC
Confidence            57899999998653

>PRK07677 short chain dehydrogenase; Provisional

Probab=97.24  E-value=0.00096  Score=64.56  Aligned_cols=72  Identities=26%  Similarity=0.390  Sum_probs=52.8

Q ss_pred             CcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Cc--c--cchh---cccc----c--CCCCee
Q 012352          381 GKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GH--A--LSLA---DLEN----F--NPEDGM  443 (465)
Q Consensus       381 ~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~--~--~~~~---~l~~----~--~~~~~D  443 (465)
                      +|+++|+|++ |+|++++..|++.|++|++++|+.++++++.+++.   ..  .  .|+.   ++.+    .  ..+..|
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRID   80 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence            4789999985 89999999999999999999999988888776653   11  1  1221   1111    0  245789


Q ss_pred             EEEecCCCC
Q 012352          444 ILANTTSIG  452 (465)
Q Consensus       444 ilInaT~~g  452 (465)
                      +|||+++..
T Consensus        81 ~lI~~ag~~   89 (252)
T PRK07677         81 ALINNAAGN   89 (252)
T ss_pred             EEEECCCCC
Confidence            999998754

>PRK08267 short chain dehydrogenase; Provisional

Probab=97.23  E-value=0.0013  Score=63.90  Aligned_cols=72  Identities=28%  Similarity=0.295  Sum_probs=54.2

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-c--c--cchhc---ccc----c--C-CCCeeEE
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-H--A--LSLAD---LEN----F--N-PEDGMIL  445 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-~--~--~~~~~---l~~----~--~-~~~~Dil  445 (465)
                      |+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+.++. .  .  .|+.+   +.+    .  . .+..|+|
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~v   81 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDVL   81 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEE
Confidence            67999998 5999999999999999999999999999888877642 1  1  22221   111    0  1 4568999


Q ss_pred             EecCCCCC
Q 012352          446 ANTTSIGM  453 (465)
Q Consensus       446 InaT~~gm  453 (465)
                      ||+++...
T Consensus        82 i~~ag~~~   89 (260)
T PRK08267         82 FNNAGILR   89 (260)
T ss_pred             EECCCCCC
Confidence            99998754

>PRK07454 short chain dehydrogenase; Provisional

Probab=97.23  E-value=0.0012  Score=63.36  Aligned_cols=74  Identities=22%  Similarity=0.234  Sum_probs=54.1

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchh---ccccc------CCCCe
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLA---DLENF------NPEDG  442 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~---~l~~~------~~~~~  442 (465)
                      ++|+++|+|+ |++|++++..|.+.|++|++++|+.++.+.+.+.+.   ...    .++.   ++...      ..+..
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGCP   84 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            3578999997 699999999999999999999999988887766542   111    1221   11110      23568


Q ss_pred             eEEEecCCCCC
Q 012352          443 MILANTTSIGM  453 (465)
Q Consensus       443 DilInaT~~gm  453 (465)
                      |+|||+++...
T Consensus        85 d~lv~~ag~~~   95 (241)
T PRK07454         85 DVLINNAGMAY   95 (241)
T ss_pred             CEEEECCCccC
Confidence            99999998754

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=97.22  E-value=0.0012  Score=63.83  Aligned_cols=75  Identities=25%  Similarity=0.372  Sum_probs=56.3

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Cc--c--cchhc---c-------cccC
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GH--A--LSLAD---L-------ENFN  438 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~--~--~~~~~---l-------~~~~  438 (465)
                      ..+++|+++|+|++ ++|++++..|++.|++|++++|+.++.+++.+++.   ..  .  .++.+   +       .. .
T Consensus         7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-~   85 (256)
T PRK06124          7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDA-E   85 (256)
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH-h
Confidence            45789999999984 99999999999999999999999988887776552   11  1  12211   1       11 2


Q ss_pred             CCCeeEEEecCCCC
Q 012352          439 PEDGMILANTTSIG  452 (465)
Q Consensus       439 ~~~~DilInaT~~g  452 (465)
                      .+..|+||++++..
T Consensus        86 ~~~id~vi~~ag~~   99 (256)
T PRK06124         86 HGRLDILVNNVGAR   99 (256)
T ss_pred             cCCCCEEEECCCCC
Confidence            45789999998764

>PRK09291 short chain dehydrogenase; Provisional

Probab=97.22  E-value=0.0012  Score=63.67  Aligned_cols=73  Identities=25%  Similarity=0.304  Sum_probs=52.5

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Cc--c--cchhc---ccccCCCCeeEEEecC
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GH--A--LSLAD---LENFNPEDGMILANTT  449 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~--~--~~~~~---l~~~~~~~~DilInaT  449 (465)
                      +|++||+|+ ||+|++++..|++.|++|++..|+.+++.++.+...   ..  .  .++.+   +........|+|||++
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~a   81 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNNA   81 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEECC
Confidence            468999998 599999999999999999999999888777765432   11  1  13322   2221123789999999


Q ss_pred             CCCC
Q 012352          450 SIGM  453 (465)
Q Consensus       450 ~~gm  453 (465)
                      +...
T Consensus        82 g~~~   85 (257)
T PRK09291         82 GIGE   85 (257)
T ss_pred             CcCC
Confidence            8653

>PRK06483 dihydromonapterin reductase; Provisional

Probab=97.22  E-value=0.0013  Score=62.94  Aligned_cols=71  Identities=20%  Similarity=0.234  Sum_probs=49.6

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchh---cc-------cccCCCCeeEEEe
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLA---DL-------ENFNPEDGMILAN  447 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~---~l-------~~~~~~~~DilIn  447 (465)
                      +|+++|+|+ ||+|++++..|++.|++|++.+|+.+...+.....+...  .|+.   ++       .+ ..+..|++||
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~id~lv~   80 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQ-HTDGLRAIIH   80 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHh-hCCCccEEEE
Confidence            478999998 599999999999999999999998765433333333221  1221   11       11 3456899999


Q ss_pred             cCCCC
Q 012352          448 TTSIG  452 (465)
Q Consensus       448 aT~~g  452 (465)
                      +++..
T Consensus        81 ~ag~~   85 (236)
T PRK06483         81 NASDW   85 (236)
T ss_pred             CCccc
Confidence            99864

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.20  E-value=0.0026  Score=63.14  Aligned_cols=132  Identities=14%  Similarity=0.198  Sum_probs=83.4

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHHh--hhccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAV--KCCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v~--~~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      -+.++++|++.....++.    +++.+.++.+ .++...|+.|.+|+-..+-  ..++.+++ .+.+...+..-    -|
T Consensus        53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p-~KDVDGl~~~n----~g  127 (282)
T PRK14180         53 EKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKP-EKDVDGFHPTN----VG  127 (282)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCc-cccccccChhh----HH
Confidence            567999999987665554    3577777777 5778999999999753221  12222222 11122222110    01


Q ss_pred             eE-EEE-----eccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHH
Q 012352          346 KL-FGY-----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRAR  418 (465)
Q Consensus       346 ~l-~G~-----NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~  418 (465)
                      ++ .|.     -.--.|++.-|+..           +.+++||+|+|+|-+ =.|+-++..|.+.|+.|+++.+.....+
T Consensus       128 ~l~~g~~~~~~PcTp~aii~lL~~y-----------~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~dl~  196 (282)
T PRK14180        128 RLQLRDKKCLESCTPKGIMTMLREY-----------GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLK  196 (282)
T ss_pred             HHhcCCCCCcCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCCCHH
Confidence            12 221     11246666666653           257899999999998 5999999999999999999976444343


Q ss_pred             HH
Q 012352          419 EL  420 (465)
Q Consensus       419 ~l  420 (465)
                      +.
T Consensus       197 ~~  198 (282)
T PRK14180        197 SH  198 (282)
T ss_pred             HH
Confidence            33

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.20  E-value=0.0021  Score=63.95  Aligned_cols=124  Identities=22%  Similarity=0.336  Sum_probs=78.0

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHH--hhhccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v--~~~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      .+.++++|++.....++-    +++.+.++.+ .++.+.|+.|..|.-..+  ...++.+++ .+.+...+..-    -|
T Consensus        54 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p-~KDVDGl~~~N----~g  128 (284)
T PRK14179         54 ERSALAAGFKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDP-KKDVDGFHPMN----TG  128 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCc-cccccccCHhh----HH
Confidence            578999999987766653    3566777777 577899999999964221  111111111 11111111110    01


Q ss_pred             eEE-E----EeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEEC
Q 012352          346 KLF-G----YNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR  412 (465)
Q Consensus       346 ~l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R  412 (465)
                      +++ |    .-.--.|++.-|+..           +.++.||+++|+|. |-+|+-++..|.+.|+.|++|..
T Consensus       129 ~l~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s  190 (284)
T PRK14179        129 HLWSGRPVMIPCTPAGIMEMFREY-----------NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHS  190 (284)
T ss_pred             HHhCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECC
Confidence            111 0    011245666666653           36789999999999 57999999999999999999943

>PRK07576 short chain dehydrogenase; Provisional

Probab=97.19  E-value=0.0016  Score=63.70  Aligned_cols=76  Identities=20%  Similarity=0.258  Sum_probs=54.9

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Cc--c--cchh---ccccc------CCC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GH--A--LSLA---DLENF------NPE  440 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~--~--~~~~---~l~~~------~~~  440 (465)
                      .+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++.   ..  .  .|+.   ++...      ..+
T Consensus         6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~   85 (264)
T PRK07576          6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFG   85 (264)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            467899999999 599999999999999999999999888777655542   11  1  1221   11110      235


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|++||+++...
T Consensus        86 ~iD~vi~~ag~~~   98 (264)
T PRK07576         86 PIDVLVSGAAGNF   98 (264)
T ss_pred             CCCEEEECCCCCC
Confidence            6899999987543

>PRK06398 aldose dehydrogenase; Validated

Probab=97.18  E-value=0.00055  Score=66.78  Aligned_cols=71  Identities=23%  Similarity=0.257  Sum_probs=49.8

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccch---hcc-------cccCCCCeeEEE
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL---ADL-------ENFNPEDGMILA  446 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~---~~l-------~~~~~~~~DilI  446 (465)
                      ++++|+++|+|+ ||+|++++..|++.|++|++++|+..+...    +.....|+   +++       .+ ..+..|+||
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~~~----~~~~~~D~~~~~~i~~~~~~~~~-~~~~id~li   77 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSYND----VDYFKVDVSNKEQVIKGIDYVIS-KYGRIDILV   77 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccccCc----eEEEEccCCCHHHHHHHHHHHHH-HcCCCCEEE
Confidence            467899999998 599999999999999999999998654321    10001122   111       11 346789999


Q ss_pred             ecCCCCC
Q 012352          447 NTTSIGM  453 (465)
Q Consensus       447 naT~~gm  453 (465)
                      |+++...
T Consensus        78 ~~Ag~~~   84 (258)
T PRK06398         78 NNAGIES   84 (258)
T ss_pred             ECCCCCC
Confidence            9998753

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=97.18  E-value=0.0012  Score=73.71  Aligned_cols=77  Identities=26%  Similarity=0.386  Sum_probs=57.1

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC----C-cc----cchh---ccccc------
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG----G-HA----LSLA---DLENF------  437 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~----~-~~----~~~~---~l~~~------  437 (465)
                      ..+.+|++||+|+ ||+|++++..|.+.|++|++++|+.++++.+.+++.    . ..    .++.   ++.+.      
T Consensus       410 ~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~  489 (676)
T TIGR02632       410 KTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVAL  489 (676)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            4577899999998 599999999999999999999999988887766553    1 11    1221   11110      


Q ss_pred             CCCCeeEEEecCCCCC
Q 012352          438 NPEDGMILANTTSIGM  453 (465)
Q Consensus       438 ~~~~~DilInaT~~gm  453 (465)
                      ..++.|+|||+++...
T Consensus       490 ~~g~iDilV~nAG~~~  505 (676)
T TIGR02632       490 AYGGVDIVVNNAGIAT  505 (676)
T ss_pred             hcCCCcEEEECCCCCC
Confidence            3457899999998754

>PRK08628 short chain dehydrogenase; Provisional

Probab=97.17  E-value=0.0012  Score=63.95  Aligned_cols=74  Identities=26%  Similarity=0.287  Sum_probs=53.2

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH---CCc--c--cchhc---c-------cccC
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGH--A--LSLAD---L-------ENFN  438 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~---~~~--~--~~~~~---l-------~~~~  438 (465)
                      .++++|+++|+|+ ||+|++++..|++.|++|+++.|+.++. ++.+++   +..  .  .++.+   +       .+ .
T Consensus         3 ~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~   80 (258)
T PRK08628          3 LNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVA-K   80 (258)
T ss_pred             CCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH-h
Confidence            4578899999998 5999999999999999999999988776 444443   211  1  12211   1       11 2


Q ss_pred             CCCeeEEEecCCCC
Q 012352          439 PEDGMILANTTSIG  452 (465)
Q Consensus       439 ~~~~DilInaT~~g  452 (465)
                      .+..|+|||+++..
T Consensus        81 ~~~id~vi~~ag~~   94 (258)
T PRK08628         81 FGRIDGLVNNAGVN   94 (258)
T ss_pred             cCCCCEEEECCccc
Confidence            35789999999864

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.17  E-value=0.0015  Score=65.70  Aligned_cols=77  Identities=27%  Similarity=0.363  Sum_probs=54.4

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECC-HHHHHHHHHHHC---Ccc----cchh---ccccc-----CC
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT-YDRARELAETVG---GHA----LSLA---DLENF-----NP  439 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~-~~~a~~la~~~~---~~~----~~~~---~l~~~-----~~  439 (465)
                      ..+++|+++|+|++ |+|++++..|++.|++|++.+|+ .++++++++++.   ...    .++.   ++.+.     ..
T Consensus         8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~   87 (306)
T PRK07792          8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGL   87 (306)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            56889999999985 99999999999999999998874 456666666552   221    1221   11110     13


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +..|+|||+++...
T Consensus        88 g~iD~li~nAG~~~  101 (306)
T PRK07792         88 GGLDIVVNNAGITR  101 (306)
T ss_pred             CCCCEEEECCCCCC
Confidence            57899999998753

>PRK12939 short chain dehydrogenase; Provisional

Probab=97.17  E-value=0.0016  Score=62.45  Aligned_cols=76  Identities=37%  Similarity=0.411  Sum_probs=55.7

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---cccc------CCC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---LENF------NPE  440 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l~~~------~~~  440 (465)
                      .+++|+++|+|+ |++|++++..|.+.|++|++++|++++.+.+.+++.   ...    .++.+   +...      ..+
T Consensus         4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   83 (250)
T PRK12939          4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALG   83 (250)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            356899999998 699999999999999999999999998887776652   111    12211   1110      235


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+|||+++...
T Consensus        84 ~id~vi~~ag~~~   96 (250)
T PRK12939         84 GLDGLVNNAGITN   96 (250)
T ss_pred             CCCEEEECCCCCC
Confidence            7899999998653

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.17  E-value=0.0017  Score=62.52  Aligned_cols=74  Identities=32%  Similarity=0.449  Sum_probs=54.9

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Cc--c--cchhc---c-------cccCCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GH--A--LSLAD---L-------ENFNPE  440 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~--~--~~~~~---l-------~~~~~~  440 (465)
                      +++|+++|+|+ |++|++++..|.+.|++|++++|+.++.+++.+++.   ..  .  .++.+   +       .+ ..+
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-~~~   80 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVE-TFG   80 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH-HcC
Confidence            35789999997 699999999999999999999999998888776652   11  1  12211   1       11 235


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+||++++...
T Consensus        81 ~~d~vi~~a~~~~   93 (258)
T PRK12429         81 GVDILVNNAGIQH   93 (258)
T ss_pred             CCCEEEECCCCCC
Confidence            6899999998654

>PRK12829 short chain dehydrogenase; Provisional

Probab=97.15  E-value=0.0014  Score=63.43  Aligned_cols=74  Identities=27%  Similarity=0.337  Sum_probs=55.9

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc---c--cchhc---c-------cccCCCC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH---A--LSLAD---L-------ENFNPED  441 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~---~--~~~~~---l-------~~~~~~~  441 (465)
                      .+++++++|+|+ |++|+.++..|.+.|++|+++.|+.+..+++.+.+...   .  .++.+   +       .+ ...+
T Consensus         8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~   86 (264)
T PRK12829          8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVE-RFGG   86 (264)
T ss_pred             ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHH-HhCC
Confidence            367899999998 59999999999999999999999988888877765422   1  12211   1       11 2357


Q ss_pred             eeEEEecCCCC
Q 012352          442 GMILANTTSIG  452 (465)
Q Consensus       442 ~DilInaT~~g  452 (465)
                      .|+||++++..
T Consensus        87 ~d~vi~~ag~~   97 (264)
T PRK12829         87 LDVLVNNAGIA   97 (264)
T ss_pred             CCEEEECCCCC
Confidence            89999998765

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.15  E-value=0.0011  Score=66.67  Aligned_cols=37  Identities=27%  Similarity=0.482  Sum_probs=32.6

Q ss_pred             cccCCcEEEEEccc---hhHHHHHHHHHHCCCeEEEEECC
Q 012352          377 SALAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       377 ~~l~~k~vlV~GaG---g~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      ..+++|.++|+|+|   |+|++++..|+++|++|++..|.
T Consensus         4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~   43 (299)
T PRK06300          4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWV   43 (299)
T ss_pred             cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEecc
Confidence            35789999999995   99999999999999999996643

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.14  E-value=0.00079  Score=61.42  Aligned_cols=42  Identities=31%  Similarity=0.427  Sum_probs=37.2

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET  423 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~  423 (465)
                      +++-++|.|.+|+.++..|.+.|++|+++||++++++++.+.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~   43 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA   43 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh
Confidence            478999999999999999999999999999999999988765

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.14  E-value=0.00056  Score=71.01  Aligned_cols=71  Identities=20%  Similarity=0.274  Sum_probs=52.1

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECC-------------------HHHHHHHHHHHC---Cc--ccchh-
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT-------------------YDRARELAETVG---GH--ALSLA-  432 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~-------------------~~~a~~la~~~~---~~--~~~~~-  432 (465)
                      +.+++|+|+|+||+|..++..|+..|+ ++++++++                   ..|++.+++.+.   ..  ...+. 
T Consensus       133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~  212 (376)
T PRK08762        133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE  212 (376)
T ss_pred             HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence            456899999999999999999999999 99999998                   567777776663   11  11111 


Q ss_pred             -----cccccCCCCeeEEEecCC
Q 012352          433 -----DLENFNPEDGMILANTTS  450 (465)
Q Consensus       433 -----~l~~~~~~~~DilInaT~  450 (465)
                           .+.+ .+.++|+||+||-
T Consensus       213 ~~~~~~~~~-~~~~~D~Vv~~~d  234 (376)
T PRK08762        213 RVTSDNVEA-LLQDVDVVVDGAD  234 (376)
T ss_pred             cCChHHHHH-HHhCCCEEEECCC
Confidence                 1112 2457899999974

>PRK06841 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.0018  Score=62.58  Aligned_cols=76  Identities=34%  Similarity=0.430  Sum_probs=53.0

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-c--c--cchh---ccccc------CCCC
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-H--A--LSLA---DLENF------NPED  441 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-~--~--~~~~---~l~~~------~~~~  441 (465)
                      .++++|+++|+|+ |++|++++..|++.|++|++++|+.+.. ++...+.. .  .  .++.   ++..+      ....
T Consensus        11 ~~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~-~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   89 (255)
T PRK06841         11 FDLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVA-EVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGR   89 (255)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            3577899999998 6999999999999999999999997653 33333321 1  1  1221   11110      2356


Q ss_pred             eeEEEecCCCCC
Q 012352          442 GMILANTTSIGM  453 (465)
Q Consensus       442 ~DilInaT~~gm  453 (465)
                      .|+||++++...
T Consensus        90 ~d~vi~~ag~~~  101 (255)
T PRK06841         90 IDILVNSAGVAL  101 (255)
T ss_pred             CCEEEECCCCCC
Confidence            899999998764

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.14  E-value=0.0013  Score=69.75  Aligned_cols=73  Identities=29%  Similarity=0.314  Sum_probs=51.6

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH-HHHHHHHHHHC---CcccchhcccccCCCCeeEEEecCCCC
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY-DRARELAETVG---GHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~-~~a~~la~~~~---~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      +++|+|+|+|+|++|.+++..|++.|++|++++++. +..++..+++.   ......+...+ ..+++|+||+++++.
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~d~vv~~~g~~   79 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEE-FLEGVDLVVVSPGVP   79 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchh-HhhcCCEEEECCCCC
Confidence            568999999999999999999999999999999975 44444444432   22111111112 235689999998765

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=97.13  E-value=0.0012  Score=70.02  Aligned_cols=69  Identities=33%  Similarity=0.376  Sum_probs=52.7

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~  450 (465)
                      ..+.||+++|+|.|.+|++++..|..+|++|+++++++.++..... .+....+++++    +..+|+||.+|+
T Consensus       250 ~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~-~G~~~~~leel----l~~ADIVI~atG  318 (476)
T PTZ00075        250 VMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM-EGYQVVTLEDV----VETADIFVTATG  318 (476)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh-cCceeccHHHH----HhcCCEEEECCC
Confidence            5689999999999999999999999999999999999877644332 34333333332    346788888875

>PRK06914 short chain dehydrogenase; Provisional

Probab=97.13  E-value=0.002  Score=63.22  Aligned_cols=74  Identities=20%  Similarity=0.245  Sum_probs=53.1

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC-----Ccc----cchhc---c---ccc--CCCC
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG-----GHA----LSLAD---L---ENF--NPED  441 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~-----~~~----~~~~~---l---~~~--~~~~  441 (465)
                      .+|+++|+|+ |++|++++..|++.|++|+++.|+.++.+++.+...     ...    .++.+   +   .+.  ..+.
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~   81 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR   81 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence            3678999998 699999999999999999999999988877765432     111    12211   1   110  2457


Q ss_pred             eeEEEecCCCCC
Q 012352          442 GMILANTTSIGM  453 (465)
Q Consensus       442 ~DilInaT~~gm  453 (465)
                      .|+||++++...
T Consensus        82 id~vv~~ag~~~   93 (280)
T PRK06914         82 IDLLVNNAGYAN   93 (280)
T ss_pred             eeEEEECCcccc
Confidence            899999987643

>PRK06172 short chain dehydrogenase; Provisional

Probab=97.12  E-value=0.0013  Score=63.59  Aligned_cols=74  Identities=26%  Similarity=0.341  Sum_probs=54.6

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---c-------cccCC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---L-------ENFNP  439 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l-------~~~~~  439 (465)
                      .+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+.+.   ...    .++.+   +       .+ ..
T Consensus         4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~-~~   82 (253)
T PRK06172          4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIA-AY   82 (253)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH-Hh
Confidence            367899999998 599999999999999999999999988777665542   111    12211   1       11 23


Q ss_pred             CCeeEEEecCCCC
Q 012352          440 EDGMILANTTSIG  452 (465)
Q Consensus       440 ~~~DilInaT~~g  452 (465)
                      +..|+|||+++..
T Consensus        83 g~id~li~~ag~~   95 (253)
T PRK06172         83 GRLDYAFNNAGIE   95 (253)
T ss_pred             CCCCEEEECCCCC
Confidence            5689999998764

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=97.12  E-value=0.0015  Score=63.13  Aligned_cols=71  Identities=23%  Similarity=0.449  Sum_probs=53.1

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchh---cccc----c--CCCCeeEEEec
Q 012352          383 LFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLA---DLEN----F--NPEDGMILANT  448 (465)
Q Consensus       383 ~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~---~l~~----~--~~~~~DilIna  448 (465)
                      +++|+|+ ||+|++++..|.+.|++|++++|+.++++.+.+.++...    .++.   ++.+    .  ..++.|+|||+
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~   81 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNN   81 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            6899997 699999999999999999999999999888877665321    1221   1111    0  23578999999


Q ss_pred             CCCCC
Q 012352          449 TSIGM  453 (465)
Q Consensus       449 T~~gm  453 (465)
                      ++...
T Consensus        82 ag~~~   86 (248)
T PRK10538         82 AGLAL   86 (248)
T ss_pred             CCccC
Confidence            98753

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.12  E-value=0.0012  Score=62.85  Aligned_cols=76  Identities=21%  Similarity=0.219  Sum_probs=52.0

Q ss_pred             CcccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHH-HHHHHHHHHCCccc--chhcccccCCCCeeEEEecCC
Q 012352          374 GVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYD-RARELAETVGGHAL--SLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       374 ~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~-~a~~la~~~~~~~~--~~~~l~~~~~~~~DilInaT~  450 (465)
                      |.+.++++|+|+|+|+|.+|..-+..|.+.|++|+|++.+.. ..+++++.-...++  .+.  .. .+.++|+||-||+
T Consensus         2 P~~l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~--~~-dl~~~~lVi~at~   78 (205)
T TIGR01470         2 PVFANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFD--AD-ILEGAFLVIAATD   78 (205)
T ss_pred             CeEEEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCC--HH-HhCCcEEEEECCC
Confidence            345678999999999999999999999999999999988654 34455443211111  111  11 2345778887776


Q ss_pred             CC
Q 012352          451 IG  452 (465)
Q Consensus       451 ~g  452 (465)
                      -.
T Consensus        79 d~   80 (205)
T TIGR01470        79 DE   80 (205)
T ss_pred             CH
Confidence            53

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK05855 short chain dehydrogenase; Validated

Probab=97.12  E-value=0.0014  Score=71.03  Aligned_cols=76  Identities=32%  Similarity=0.440  Sum_probs=57.4

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Cc--c--cchhc---c-------cccCC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GH--A--LSLAD---L-------ENFNP  439 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~--~--~~~~~---l-------~~~~~  439 (465)
                      .+.+++++|+|+ ||+|++++..|++.|++|++++|+.++.+++++.+.   ..  .  .|+.+   +       .+ ..
T Consensus       312 ~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~-~~  390 (582)
T PRK05855        312 PFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRA-EH  390 (582)
T ss_pred             cCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH-hc
Confidence            456789999998 699999999999999999999999999888877652   11  1  22221   1       11 34


Q ss_pred             CCeeEEEecCCCCCC
Q 012352          440 EDGMILANTTSIGMQ  454 (465)
Q Consensus       440 ~~~DilInaT~~gm~  454 (465)
                      +..|+|||++++...
T Consensus       391 g~id~lv~~Ag~~~~  405 (582)
T PRK05855        391 GVPDIVVNNAGIGMA  405 (582)
T ss_pred             CCCcEEEECCccCCC
Confidence            568999999988653

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=97.12  E-value=0.0013  Score=63.42  Aligned_cols=74  Identities=20%  Similarity=0.315  Sum_probs=55.2

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC----c--c--cchh-----c-------ccc
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG----H--A--LSLA-----D-------LEN  436 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~----~--~--~~~~-----~-------l~~  436 (465)
                      .+++|+++|+|+ |++|.+++..|++.|++|++++|+.++++++.+++..    .  .  .++.     +       +.+
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE   88 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence            467899999988 5899999999999999999999999888887766531    1  1  1221     1       111


Q ss_pred             cCCCCeeEEEecCCCC
Q 012352          437 FNPEDGMILANTTSIG  452 (465)
Q Consensus       437 ~~~~~~DilInaT~~g  452 (465)
                       ..+..|+||++++..
T Consensus        89 -~~~~id~vi~~Ag~~  103 (247)
T PRK08945         89 -QFGRLDGVLHNAGLL  103 (247)
T ss_pred             -HhCCCCEEEECCccc
Confidence             245789999998763

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.12  E-value=0.0048  Score=61.15  Aligned_cols=133  Identities=23%  Similarity=0.296  Sum_probs=82.6

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHHh--hhccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAV--KCCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v~--~~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      .+.++++|++.....++-    +++.+.++.+ .+.++.|+.|.+|.-..+-  ..++.+++ .+.+...+..-    -|
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p-~KDVDGl~~~n----~g  128 (278)
T PRK14172         54 EKVANSLGIDFKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDA-NKDIDCLTFIS----VG  128 (278)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCc-ccccCccCHhh----HH
Confidence            578999999987776653    3566777777 4778999999999742211  11111111 11111111110    01


Q ss_pred             eEE-EE----eccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHH
Q 012352          346 KLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARE  419 (465)
Q Consensus       346 ~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~  419 (465)
                      +++ |.    -.--.|++.-|+..           +.++.||+|+|+|-+ =.|+-++..|.+.|+.|+++.+.....++
T Consensus       129 ~l~~g~~~~~PcTp~av~~lL~~~-----------~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~~l~~  197 (278)
T PRK14172        129 KFYKGEKCFLPCTPNSVITLIKSL-----------NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKNLKE  197 (278)
T ss_pred             HHhCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHH
Confidence            111 11    11245666666653           257899999999998 58999999999999999999754444444


Q ss_pred             HH
Q 012352          420 LA  421 (465)
Q Consensus       420 la  421 (465)
                      +.
T Consensus       198 ~~  199 (278)
T PRK14172        198 VC  199 (278)
T ss_pred             HH
Confidence            43

>PRK08263 short chain dehydrogenase; Provisional

Probab=97.11  E-value=0.0021  Score=63.20  Aligned_cols=73  Identities=27%  Similarity=0.373  Sum_probs=54.0

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchh---cccc----c--CCCCeeEEE
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLA---DLEN----F--NPEDGMILA  446 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~---~l~~----~--~~~~~DilI  446 (465)
                      +|+++|+|+ |++|++++..|.+.|++|+++.|+.++...+.+.++...    .++.   ++.+    .  ..+..|+||
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi   82 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIVV   82 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            578999998 699999999999999999999999988887776654321    1221   1111    0  245789999


Q ss_pred             ecCCCCC
Q 012352          447 NTTSIGM  453 (465)
Q Consensus       447 naT~~gm  453 (465)
                      |+++...
T Consensus        83 ~~ag~~~   89 (275)
T PRK08263         83 NNAGYGL   89 (275)
T ss_pred             ECCCCcc
Confidence            9998753

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.11  E-value=0.00063  Score=70.69  Aligned_cols=68  Identities=28%  Similarity=0.375  Sum_probs=48.2

Q ss_pred             EEEEccchhHHHHHHHHHHCC-C-eEEEEECCHHHHHHHHHHHCC-c--c--cch---hcccccCCCCeeEEEecCCCC
Q 012352          384 FVVIGAGGAGKALAYGAKAKG-A-RVVIANRTYDRARELAETVGG-H--A--LSL---ADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       384 vlV~GaGg~g~ai~~~L~~~G-~-~v~i~~R~~~~a~~la~~~~~-~--~--~~~---~~l~~~~~~~~DilInaT~~g  452 (465)
                      |+|+|+|.+|++++..|++.+ . +|++++|+.++++++++.+.. .  .  ++.   +++.+ .+.+.|+||||+|-.
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-~~~~~dvVin~~gp~   78 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAE-LLRGCDVVINCAGPF   78 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHH-HHTTSSEEEE-SSGG
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHH-HHhcCCEEEECCccc
Confidence            689999999999999999887 4 899999999999999887432 1  1  232   22444 356789999998743

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=97.11  E-value=0.0017  Score=62.91  Aligned_cols=75  Identities=31%  Similarity=0.451  Sum_probs=56.1

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchh---cc-------cccC
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLA---DL-------ENFN  438 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~---~l-------~~~~  438 (465)
                      ..+++|+++|+|++ |+|++++..|.+.|++|++++|+.++.+.+++++.   ...    .|+.   ++       .+ .
T Consensus         7 ~~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~-~   85 (255)
T PRK06113          7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALS-K   85 (255)
T ss_pred             cCcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH-H
Confidence            45678999999984 99999999999999999999999988887776552   111    2221   11       11 2


Q ss_pred             CCCeeEEEecCCCC
Q 012352          439 PEDGMILANTTSIG  452 (465)
Q Consensus       439 ~~~~DilInaT~~g  452 (465)
                      .+..|+|||+++..
T Consensus        86 ~~~~d~li~~ag~~   99 (255)
T PRK06113         86 LGKVDILVNNAGGG   99 (255)
T ss_pred             cCCCCEEEECCCCC
Confidence            45789999999864

>PRK06482 short chain dehydrogenase; Provisional

Probab=97.10  E-value=0.0019  Score=63.35  Aligned_cols=72  Identities=22%  Similarity=0.366  Sum_probs=53.4

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---cccc------CCCCeeEEEe
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---LENF------NPEDGMILAN  447 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~DilIn  447 (465)
                      |++||+|+ |++|++++..|.+.|++|+++.|+.++.+.+.+..+...    .++.+   +.+.      ..+..|+|||
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   82 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVVS   82 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            68999997 699999999999999999999999988887766554221    22221   1110      2356899999


Q ss_pred             cCCCCC
Q 012352          448 TTSIGM  453 (465)
Q Consensus       448 aT~~gm  453 (465)
                      +++...
T Consensus        83 ~ag~~~   88 (276)
T PRK06482         83 NAGYGL   88 (276)
T ss_pred             CCCCCC
Confidence            998764

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.10  E-value=0.0047  Score=61.36  Aligned_cols=132  Identities=18%  Similarity=0.254  Sum_probs=82.8

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHH--hhhccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v--~~~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      .+.++++|++.....+.-    +++.+.++.+ .++++.|+.|.+|+...+  ...++.+++ .+.+...+..-    -|
T Consensus        55 ~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p-~KDVDGl~~~n----~g  129 (284)
T PRK14177         55 VKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIAL-EKDVDGVTTLS----FG  129 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCc-ccccccCChhh----HH
Confidence            668999999987666543    3567777777 467999999999975321  111111111 11111111110    01


Q ss_pred             eE-EEE----eccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHH
Q 012352          346 KL-FGY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARE  419 (465)
Q Consensus       346 ~l-~G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~  419 (465)
                      ++ .|.    -.--.|++.-|+..           +.++.||+|+|+|-+ =.|+-++..|.+.|+.|+++.......++
T Consensus       130 ~l~~g~~~~~PcTp~avi~ll~~y-----------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~l~~  198 (284)
T PRK14177        130 KLSMGVETYLPCTPYGMVLLLKEY-----------GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLPS  198 (284)
T ss_pred             HHHcCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHH
Confidence            11 111    11246677766653           267899999999998 59999999999999999999754443443


Q ss_pred             H
Q 012352          420 L  420 (465)
Q Consensus       420 l  420 (465)
                      .
T Consensus       199 ~  199 (284)
T PRK14177        199 I  199 (284)
T ss_pred             H
Confidence            3

>PRK05693 short chain dehydrogenase; Provisional

Probab=97.09  E-value=0.0014  Score=64.24  Aligned_cols=71  Identities=28%  Similarity=0.373  Sum_probs=51.0

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchh---cccc----c--CCCCeeEEEecC
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLA---DLEN----F--NPEDGMILANTT  449 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~---~l~~----~--~~~~~DilInaT  449 (465)
                      |+++|+|+ ||+|++++..|++.|++|++++|+.++.+.+.+. +...  .++.   ++.+    .  ..+..|+|||++
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a   80 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAA-GFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNA   80 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHC-CCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            68999998 5999999999999999999999998887766432 2211  1221   1111    0  235789999999


Q ss_pred             CCCC
Q 012352          450 SIGM  453 (465)
Q Consensus       450 ~~gm  453 (465)
                      +.+.
T Consensus        81 g~~~   84 (274)
T PRK05693         81 GYGA   84 (274)
T ss_pred             CCCC
Confidence            8653

>PRK12828 short chain dehydrogenase; Provisional

Probab=97.09  E-value=0.0015  Score=61.95  Aligned_cols=74  Identities=26%  Similarity=0.269  Sum_probs=53.3

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC---cc--cch---hccccc------CCCCee
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG---HA--LSL---ADLENF------NPEDGM  443 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~---~~--~~~---~~l~~~------~~~~~D  443 (465)
                      +++|++||+|+ |++|++++..|.+.|++|++++|+.++..+..+++..   ..  .++   +++...      ..+..|
T Consensus         5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   84 (239)
T PRK12828          5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLD   84 (239)
T ss_pred             CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcC
Confidence            56899999998 6999999999999999999999998876665554431   11  122   111110      235789


Q ss_pred             EEEecCCCC
Q 012352          444 ILANTTSIG  452 (465)
Q Consensus       444 ilInaT~~g  452 (465)
                      +||++++..
T Consensus        85 ~vi~~ag~~   93 (239)
T PRK12828         85 ALVNIAGAF   93 (239)
T ss_pred             EEEECCccc
Confidence            999998764

>PRK05875 short chain dehydrogenase; Provisional

Probab=97.09  E-value=0.0013  Score=64.51  Aligned_cols=75  Identities=24%  Similarity=0.329  Sum_probs=54.8

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC-----Ccc----cchhc---cccc------C
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG-----GHA----LSLAD---LENF------N  438 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~-----~~~----~~~~~---l~~~------~  438 (465)
                      .+++|+++|+|+ |++|++++..|.+.|++|++++|+.++.+.+.+++.     ...    .++.+   +...      .
T Consensus         4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   83 (276)
T PRK05875          4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAW   83 (276)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            367899999998 699999999999999999999999888777766542     111    12211   1110      2


Q ss_pred             CCCeeEEEecCCCC
Q 012352          439 PEDGMILANTTSIG  452 (465)
Q Consensus       439 ~~~~DilInaT~~g  452 (465)
                      .+..|+|||+++..
T Consensus        84 ~~~~d~li~~ag~~   97 (276)
T PRK05875         84 HGRLHGVVHCAGGS   97 (276)
T ss_pred             cCCCCEEEECCCcc
Confidence            35689999999754

>PRK07832 short chain dehydrogenase; Provisional

Probab=97.09  E-value=0.002  Score=63.13  Aligned_cols=71  Identities=25%  Similarity=0.375  Sum_probs=52.1

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc-----cchhc----------ccccCCCCe
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA-----LSLAD----------LENFNPEDG  442 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~-----~~~~~----------l~~~~~~~~  442 (465)
                      |+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++.   ...     .|+.+          +.+ ..+..
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~i   79 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHA-AHGSM   79 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHH-hcCCC
Confidence            46899988 599999999999999999999999988777766542   111     22211          111 24568


Q ss_pred             eEEEecCCCCC
Q 012352          443 MILANTTSIGM  453 (465)
Q Consensus       443 DilInaT~~gm  453 (465)
                      |+|||+++.+.
T Consensus        80 d~lv~~ag~~~   90 (272)
T PRK07832         80 DVVMNIAGISA   90 (272)
T ss_pred             CEEEECCCCCC
Confidence            99999998653

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.08  E-value=0.0019  Score=62.13  Aligned_cols=73  Identities=25%  Similarity=0.394  Sum_probs=52.1

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEE-EECCHHHHHHHHHHHC---Cc--c--cchh---cc-------cccCCC
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVI-ANRTYDRARELAETVG---GH--A--LSLA---DL-------ENFNPE  440 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i-~~R~~~~a~~la~~~~---~~--~--~~~~---~l-------~~~~~~  440 (465)
                      .+++++|+|+ |++|++++..|.+.|++|++ ..|+.++.+++.+++.   ..  .  .++.   ++       .+ ..+
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~   81 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDE-EFG   81 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH-HcC
Confidence            4689999998 59999999999999998766 5888888877766652   21  1  1221   11       11 235


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+|||+++.+.
T Consensus        82 ~id~vi~~ag~~~   94 (250)
T PRK08063         82 RLDVFVNNAASGV   94 (250)
T ss_pred             CCCEEEECCCCCC
Confidence            6899999997653

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.08  E-value=0.0051  Score=61.01  Aligned_cols=132  Identities=19%  Similarity=0.243  Sum_probs=82.3

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHH--hhhccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v--~~~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      .+.++++|++..-..++-    +++.+.++.+ .+++..|+.|..|....+  ...++.+++ -+.+...+.+-    -|
T Consensus        53 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p-~KDVDGl~~~n----~g  127 (281)
T PRK14183         53 AKACDRVGIYSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDP-KKDVDGFHPYN----VG  127 (281)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCc-hhcccccChhh----hh
Confidence            567899999976555432    3577777777 577899999999975222  112222222 12222222210    11


Q ss_pred             eE-EEE----eccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHH
Q 012352          346 KL-FGY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARE  419 (465)
Q Consensus       346 ~l-~G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~  419 (465)
                      ++ .|.    -.--.|++.-|++.           +.+++||+|+|+|-| -.|+-++..|.+.|+.|+++.......++
T Consensus       128 ~l~~g~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~~  196 (281)
T PRK14183        128 RLVTGLDGFVPCTPLGVMELLEEY-----------EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLKA  196 (281)
T ss_pred             HHhcCCCCCCCCcHHHHHHHHHHc-----------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHHH
Confidence            22 111    11145666666653           267899999999998 79999999999999999999754443333


Q ss_pred             H
Q 012352          420 L  420 (465)
Q Consensus       420 l  420 (465)
                      +
T Consensus       197 ~  197 (281)
T PRK14183        197 H  197 (281)
T ss_pred             H
Confidence            3

>TIGR00936 ahcY adenosylhomocysteinase

Probab=97.08  E-value=0.0015  Score=68.21  Aligned_cols=70  Identities=33%  Similarity=0.401  Sum_probs=52.4

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      ..+.+++|+|+|.|.+|+.++..+...|++|+++++++.++.... ..+....+.++    .+..+|++|.+|+.
T Consensus       191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-~~G~~v~~lee----al~~aDVVItaTG~  260 (406)
T TIGR00936       191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-MDGFRVMTMEE----AAKIGDIFITATGN  260 (406)
T ss_pred             CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-hcCCEeCCHHH----HHhcCCEEEECCCC
Confidence            347899999999999999999999999999999999998764433 23333333322    23467888888763

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.07  E-value=0.0017  Score=62.34  Aligned_cols=74  Identities=24%  Similarity=0.337  Sum_probs=54.1

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchh---cccc----c--CCCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLA---DLEN----F--NPED  441 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~---~l~~----~--~~~~  441 (465)
                      +++++++|+|+ ||+|++++..|.+.|++|++++|+.++.+.+.+++.   ...    .++.   ++.+    .  ..+.
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQ   82 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            46789999998 799999999999999999999999988877766552   111    1221   1110    0  2356


Q ss_pred             eeEEEecCCCC
Q 012352          442 GMILANTTSIG  452 (465)
Q Consensus       442 ~DilInaT~~g  452 (465)
                      .|.|||+++..
T Consensus        83 id~vi~~ag~~   93 (253)
T PRK08217         83 LNGLINNAGIL   93 (253)
T ss_pred             CCEEEECCCcc
Confidence            89999999864

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=97.07  E-value=0.0014  Score=59.51  Aligned_cols=68  Identities=26%  Similarity=0.342  Sum_probs=48.7

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCC
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~  450 (465)
                      +++|++.|+|.|.-|++-+..|.+.|.+|+|..|...+..+.|++-|....++.+.    ..++|+|+..+|
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eA----v~~aDvV~~L~P   69 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEA----VKKADVVMLLLP   69 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHH----HHC-SEEEE-S-
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHH----HhhCCEEEEeCC
Confidence            46899999999999999999999999999999999888888888766554444332    234677776665

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK05599 hypothetical protein; Provisional

Probab=97.07  E-value=0.0016  Score=63.17  Aligned_cols=69  Identities=17%  Similarity=0.173  Sum_probs=51.4

Q ss_pred             cEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Cc---c--cchhc---c-------cccCCCCe
Q 012352          382 KLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GH---A--LSLAD---L-------ENFNPEDG  442 (465)
Q Consensus       382 k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~---~--~~~~~---l-------~~~~~~~~  442 (465)
                      +.++|+|++ |+|++++..|+ .|++|++++|+.++++++++++.   ..   .  .|+.+   +       .+ ..+..
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~-~~g~i   78 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQE-LAGEI   78 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHH-hcCCC
Confidence            368999996 99999999998 59999999999999998887763   11   1  12211   1       11 34678


Q ss_pred             eEEEecCCCC
Q 012352          443 MILANTTSIG  452 (465)
Q Consensus       443 DilInaT~~g  452 (465)
                      |++||+++..
T Consensus        79 d~lv~nag~~   88 (246)
T PRK05599         79 SLAVVAFGIL   88 (246)
T ss_pred             CEEEEecCcC
Confidence            9999998764

>PLN02928 oxidoreductase family protein

Probab=97.06  E-value=0.00073  Score=69.41  Aligned_cols=75  Identities=17%  Similarity=0.267  Sum_probs=50.3

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHH--------HHHCCcccchhcccccCCCCeeEEEec
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELA--------ETVGGHALSLADLENFNPEDGMILANT  448 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la--------~~~~~~~~~~~~l~~~~~~~~DilIna  448 (465)
                      ..+.+|++.|+|.|.+|+.++..|..+|++|+.++|+..+.....        ..+......+.++.+ .+.++|+|+++
T Consensus       155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e-ll~~aDiVvl~  233 (347)
T PLN02928        155 DTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYE-FAGEADIVVLC  233 (347)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHH-HHhhCCEEEEC
Confidence            357899999999999999999999999999999999743221110        000000012233444 34567888888


Q ss_pred             CCCC
Q 012352          449 TSIG  452 (465)
Q Consensus       449 T~~g  452 (465)
                      +|..
T Consensus       234 lPlt  237 (347)
T PLN02928        234 CTLT  237 (347)
T ss_pred             CCCC
Confidence            8754

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=97.04  E-value=0.0022  Score=62.20  Aligned_cols=73  Identities=25%  Similarity=0.358  Sum_probs=53.2

Q ss_pred             CcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC-----Ccc----cchhc---c-------cccCCC
Q 012352          381 GKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG-----GHA----LSLAD---L-------ENFNPE  440 (465)
Q Consensus       381 ~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~-----~~~----~~~~~---l-------~~~~~~  440 (465)
                      +|+++|+|++ ++|++++..|++.|++|++++|+..+.+++++++.     ...    .++.+   +       .+ ..+
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~-~~~   80 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDE-IFG   80 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHH-HcC
Confidence            5789999984 99999999999999999999999888877766542     111    12211   1       11 235


Q ss_pred             CeeEEEecCCCCCC
Q 012352          441 DGMILANTTSIGMQ  454 (465)
Q Consensus       441 ~~DilInaT~~gm~  454 (465)
                      ..|++||+++....
T Consensus        81 ~id~vv~~ag~~~~   94 (259)
T PRK12384         81 RVDLLVYNAGIAKA   94 (259)
T ss_pred             CCCEEEECCCcCCC
Confidence            78999999976543

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=97.04  E-value=0.0011  Score=63.23  Aligned_cols=76  Identities=26%  Similarity=0.309  Sum_probs=51.8

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC----cc--c--chh---ccc----c--cCC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG----HA--L--SLA---DLE----N--FNP  439 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~----~~--~--~~~---~l~----~--~~~  439 (465)
                      ++.||+|+++|+ ||+|++++.+|.+.|+.+.++.-+.++.+..++--..    ++  +  ++.   ++.    +  ..+
T Consensus         2 ~~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~f   81 (261)
T KOG4169|consen    2 DLTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATF   81 (261)
T ss_pred             cccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHHh
Confidence            456899999965 8999999999999999666665556666666543221    11  1  111   111    1  157


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +..|++||.+++..
T Consensus        82 g~iDIlINgAGi~~   95 (261)
T KOG4169|consen   82 GTIDILINGAGILD   95 (261)
T ss_pred             CceEEEEccccccc
Confidence            88999999998864

>PRK06179 short chain dehydrogenase; Provisional

Probab=97.03  E-value=0.00072  Score=66.06  Aligned_cols=69  Identities=28%  Similarity=0.366  Sum_probs=49.3

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchh---cc-------cccCCCCeeEEEe
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLA---DL-------ENFNPEDGMILAN  447 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~---~l-------~~~~~~~~DilIn  447 (465)
                      +++++|+|+ ||+|++++..|++.|++|++.+|+.++.+...   +...  .|+.   ++       .+ ..+..|+|||
T Consensus         4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~---~~~~~~~D~~d~~~~~~~~~~~~~-~~g~~d~li~   79 (270)
T PRK06179          4 SKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPIP---GVELLELDVTDDASVQAAVDEVIA-RAGRIDVLVN   79 (270)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccccC---CCeeEEeecCCHHHHHHHHHHHHH-hCCCCCEEEE
Confidence            578999998 69999999999999999999999977654321   1111  1221   11       11 3457899999


Q ss_pred             cCCCCC
Q 012352          448 TTSIGM  453 (465)
Q Consensus       448 aT~~gm  453 (465)
                      +++.+.
T Consensus        80 ~ag~~~   85 (270)
T PRK06179         80 NAGVGL   85 (270)
T ss_pred             CCCCCC
Confidence            998754

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.03  E-value=0.003  Score=62.72  Aligned_cols=133  Identities=20%  Similarity=0.288  Sum_probs=83.3

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHHhh--hccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVK--CCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v~~--~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      .+..+++|++.....++-    +++.+.++.+ .++.+.|+.|.+|....+-.  .++.+++ .+.+...+.+-    -|
T Consensus        52 ~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p-~KDVDGl~~~N----~g  126 (282)
T PRK14166         52 AKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIIS-SKDVDGFHPIN----VG  126 (282)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc-ccCcccCChhh----hH
Confidence            567899999987666553    3566666766 46789999999997532211  2222222 12222222220    11


Q ss_pred             eE-EEE-----eccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHH
Q 012352          346 KL-FGY-----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRAR  418 (465)
Q Consensus       346 ~l-~G~-----NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~  418 (465)
                      ++ .|.     -.--.|++.-|+..           +.++.||+|+|+|-+ =.|+-++..|.+.|+.|+++.+.....+
T Consensus       127 ~l~~g~~~~~~PcTp~avi~lL~~y-----------~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T~nl~  195 (282)
T PRK14166        127 YLNLGLESGFLPCTPLGVMKLLKAY-----------EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLS  195 (282)
T ss_pred             HHhcCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHH
Confidence            22 121     11245666666653           257899999999998 5899999999999999999976544444


Q ss_pred             HHH
Q 012352          419 ELA  421 (465)
Q Consensus       419 ~la  421 (465)
                      +..
T Consensus       196 ~~~  198 (282)
T PRK14166        196 LYT  198 (282)
T ss_pred             HHH
Confidence            433

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.03  E-value=0.0055  Score=61.18  Aligned_cols=133  Identities=17%  Similarity=0.216  Sum_probs=82.4

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHHh--hhccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAV--KCCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v~--~~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      .+.++++|++.....++.    +++.+.++.+ .++...|+.|..|.-..+-  ..++.+++ .+.+...+..-    -|
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I~p-~KDVDGl~~~n----~g  128 (294)
T PRK14187         54 QRKAEMLGLRSETILLPSTISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDP-EKDVDGFHNEN----VG  128 (294)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc-ccCcccCChhh----HH
Confidence            667999999987666653    2566667777 5778999999999752211  11111111 11111111110    11


Q ss_pred             eEE-EE------eccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHH
Q 012352          346 KLF-GY------NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRA  417 (465)
Q Consensus       346 ~l~-G~------NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a  417 (465)
                      +++ |.      -.--.|++.-|+..           +.++.||+|+|+|-+ =.|+-++..|.+.|+.|+++.......
T Consensus       129 ~l~~g~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T~~l  197 (294)
T PRK14187        129 RLFTGQKKNCLIPCTPKGCLYLIKTI-----------TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSATRDL  197 (294)
T ss_pred             HHhCCCCCCCccCcCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCCCCH
Confidence            221 11      11245666666653           267899999999998 599999999999999999997654444


Q ss_pred             HHHH
Q 012352          418 RELA  421 (465)
Q Consensus       418 ~~la  421 (465)
                      ++..
T Consensus       198 ~~~~  201 (294)
T PRK14187        198 ADYC  201 (294)
T ss_pred             HHHH
Confidence            4443

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.02  E-value=0.0011  Score=67.77  Aligned_cols=37  Identities=32%  Similarity=0.529  Sum_probs=34.0

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCH
Q 012352          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY  414 (465)
Q Consensus       378 ~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~  414 (465)
                      .+++++|+|+|+||.|..++..|+..|+ ++++++++.
T Consensus        21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            3667899999999999999999999998 999999974

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=97.02  E-value=0.0022  Score=61.58  Aligned_cols=73  Identities=22%  Similarity=0.325  Sum_probs=53.2

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchh---ccccc------CCCCe
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLA---DLENF------NPEDG  442 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~---~l~~~------~~~~~  442 (465)
                      ++|++||+|+ |++|++++..|.+.|++|++++|+.++.+++.+.+.   ...    .++.   ++.+.      ...+.
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~   81 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGPV   81 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999998 599999999999999999999999988887766542   111    1221   11110      23568


Q ss_pred             eEEEecCCCC
Q 012352          443 MILANTTSIG  452 (465)
Q Consensus       443 DilInaT~~g  452 (465)
                      |++||+++..
T Consensus        82 d~vi~~ag~~   91 (250)
T TIGR03206        82 DVLVNNAGWD   91 (250)
T ss_pred             CEEEECCCCC
Confidence            9999999763

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=97.02  E-value=0.0016  Score=62.13  Aligned_cols=75  Identities=33%  Similarity=0.449  Sum_probs=53.8

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Cc--c--cchhc---cccc------CCCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GH--A--LSLAD---LENF------NPED  441 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~--~--~~~~~---l~~~------~~~~  441 (465)
                      +.+++++|+|+ |++|+.++..|.+.|++|++++|++++.+.+.+.+.   ..  .  .++.+   +...      ....
T Consensus         3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (246)
T PRK05653          3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGA   82 (246)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            45689999998 699999999999999999999999988777666543   11  1  12211   1110      2356


Q ss_pred             eeEEEecCCCCC
Q 012352          442 GMILANTTSIGM  453 (465)
Q Consensus       442 ~DilInaT~~gm  453 (465)
                      .|.||++++...
T Consensus        83 id~vi~~ag~~~   94 (246)
T PRK05653         83 LDILVNNAGITR   94 (246)
T ss_pred             CCEEEECCCcCC
Confidence            799999987643

>PRK05650 short chain dehydrogenase; Provisional

Probab=97.02  E-value=0.0022  Score=62.83  Aligned_cols=73  Identities=19%  Similarity=0.300  Sum_probs=53.1

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---cccc------CCCCeeE
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---LENF------NPEDGMI  444 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l~~~------~~~~~Di  444 (465)
                      ++++|+|+ ||+|++++..|.+.|++|+++.|+.++++++.+++.   ...    .++.+   +.+.      ..+..|+
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~   80 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDV   80 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            46899988 699999999999999999999999998887766552   111    12211   1110      2357899


Q ss_pred             EEecCCCCCC
Q 012352          445 LANTTSIGMQ  454 (465)
Q Consensus       445 lInaT~~gm~  454 (465)
                      |||+++....
T Consensus        81 lI~~ag~~~~   90 (270)
T PRK05650         81 IVNNAGVASG   90 (270)
T ss_pred             EEECCCCCCC
Confidence            9999987643

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.01  E-value=0.0057  Score=60.85  Aligned_cols=133  Identities=16%  Similarity=0.263  Sum_probs=83.2

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHHh--hhccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAV--KCCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v~--~~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      .+.++++|++.....++-    +++.+.++.+ .++++.|+.|.+|.-..+-  ..++.+++ .+.+...+..-    -|
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p-~KDVDGl~~~n----~g  128 (284)
T PRK14190         54 KKAAEKVGIYSELYEFPADITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISP-EKDVDGFHPIN----VG  128 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCc-cccccccCHhh----HH
Confidence            667999999987666654    2577777777 5678999999999753211  11222222 11222222210    01


Q ss_pred             eEE-EE----eccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHH
Q 012352          346 KLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARE  419 (465)
Q Consensus       346 ~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~  419 (465)
                      +++ |.    -.--.|++.-|+..           +.+++||+|+|+|-+ =.|+-++..|.+.|+.|+++.......++
T Consensus       129 ~l~~~~~~~~PcTp~av~~lL~~~-----------~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~l~~  197 (284)
T PRK14190        129 RMMLGQDTFLPCTPHGILELLKEY-----------NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLAE  197 (284)
T ss_pred             HHhcCCCCCCCCCHHHHHHHHHHc-----------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchhHHH
Confidence            111 10    11245666666653           367899999999998 59999999999999999999665444444


Q ss_pred             HH
Q 012352          420 LA  421 (465)
Q Consensus       420 la  421 (465)
                      ..
T Consensus       198 ~~  199 (284)
T PRK14190        198 LT  199 (284)
T ss_pred             HH
Confidence            33

>PRK05884 short chain dehydrogenase; Provisional

Probab=97.01  E-value=0.002  Score=61.47  Aligned_cols=70  Identities=20%  Similarity=0.264  Sum_probs=51.8

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCccc--chh---ccccc---CCCCeeEEEecCCCC
Q 012352          383 LFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL--SLA---DLENF---NPEDGMILANTTSIG  452 (465)
Q Consensus       383 ~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~--~~~---~l~~~---~~~~~DilInaT~~g  452 (465)
                      +++|+|+ ||+|++++..|.+.|++|++++|+.++.++++++++...+  ++.   ++.+.   .....|++||+++.+
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ag~~   80 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNVPAPS   80 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCcEEEECCCcc
Confidence            5899988 6999999999999999999999999998888777643322  221   12110   112579999998754

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.01  E-value=0.0044  Score=61.45  Aligned_cols=125  Identities=21%  Similarity=0.288  Sum_probs=81.9

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHHhhhccccCHHHHhccceeeEEEeccC---
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSD---  344 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v~~~~d~~~~~A~~~gavNtv~~~~~~---  344 (465)
                      .+.++++|++.....++-    +++.+.++.+ .++.+.|+.|..|....+    |+    -+...+++.-.=-  |   
T Consensus        52 ~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i----~~----~~i~~~I~p~KDV--DGl~  121 (282)
T PRK14182         52 RKDCEEVGITSVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPKHV----DE----RAVLDAISPAKDA--DGFH  121 (282)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCC----CH----HHHHhccCcccCc--CCCC
Confidence            567999999987666643    3577777777 577899999999975321    11    1222222222100  1   


Q ss_pred             ----CeEE-EE-----eccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECC
Q 012352          345 ----GKLF-GY-----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       345 ----g~l~-G~-----NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                          |+++ |.     -.--.|++.-|+..           +.+++||+|+|+|-+ =.|+-++..|.+.|+.|+++...
T Consensus       122 ~~n~g~l~~g~~~~~~PcTp~avi~ll~~~-----------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~  190 (282)
T PRK14182        122 PFNVGALSIGIAGVPRPCTPAGVMRMLDEA-----------RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSR  190 (282)
T ss_pred             HhHHHHHhCCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC
Confidence                1111 11     11246677767653           267899999999998 59999999999999999999765


Q ss_pred             HHHHH
Q 012352          414 YDRAR  418 (465)
Q Consensus       414 ~~~a~  418 (465)
                      ....+
T Consensus       191 T~nl~  195 (282)
T PRK14182        191 TADLA  195 (282)
T ss_pred             CCCHH
Confidence            44333

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.01  E-value=0.0041  Score=61.92  Aligned_cols=132  Identities=19%  Similarity=0.287  Sum_probs=82.6

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHH--hhhccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v--~~~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      .+.++++|++.....++-    +++.+.++.+ .+..+.|+.|.+|.-..+  ...++.+++ .+.+...+.+-    -|
T Consensus        51 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p-~KDVDGl~~~N----~g  125 (287)
T PRK14173         51 DRQAKALGLRSQVEVLPESTSQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDP-LKDVDGFHPLN----VG  125 (287)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc-cccccccChhh----hH
Confidence            567899999987776653    3577777777 467899999999964321  111222221 12222222210    01


Q ss_pred             eEE-EE----eccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHH
Q 012352          346 KLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARE  419 (465)
Q Consensus       346 ~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~  419 (465)
                      +++ |.    -.--.|++.-|+..           +.++.||+|+|+|.+ =.|+-++..|.+.|+.|+++.+.....++
T Consensus       126 ~l~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T~~l~~  194 (287)
T PRK14173        126 RLWMGGEALEPCTPAGVVRLLKHY-----------GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQDLPA  194 (287)
T ss_pred             HHhcCCCCCCCCCHHHHHHHHHHc-----------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCCCCHHH
Confidence            121 11    11245666666652           367899999999998 59999999999999999999655444333


Q ss_pred             H
Q 012352          420 L  420 (465)
Q Consensus       420 l  420 (465)
                      .
T Consensus       195 ~  195 (287)
T PRK14173        195 V  195 (287)
T ss_pred             H
Confidence            3

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.00  E-value=0.0014  Score=55.14  Aligned_cols=65  Identities=22%  Similarity=0.328  Sum_probs=44.3

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccch--hcccccCCCCeeEEEecCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL--ADLENFNPEDGMILANTTS  450 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~--~~l~~~~~~~~DilInaT~  450 (465)
                      .++++|+|||+|+|.+|..-+..|.+.|++|+|++.+.+..+      +  .+.|  ....+ .+.++|+||.||+
T Consensus         3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~------~--~i~~~~~~~~~-~l~~~~lV~~at~   69 (103)
T PF13241_consen    3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE------G--LIQLIRREFEE-DLDGADLVFAATD   69 (103)
T ss_dssp             E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH------T--SCEEEESS-GG-GCTTESEEEE-SS
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh------h--HHHHHhhhHHH-HHhhheEEEecCC
Confidence            567899999999999999999999999999999999861111      1  1111  11222 3566888888875

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=97.00  E-value=0.0017  Score=65.93  Aligned_cols=70  Identities=26%  Similarity=0.323  Sum_probs=51.3

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~  450 (465)
                      ..+++|++.|+|.|.+|++++..|...|.+|++.+|+..+..+.+...+....+..   + ...++|+|+.++|
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~---e-aa~~ADVVvLaVP   82 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVA---E-AAKWADVIMILLP   82 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHH---H-HHhcCCEEEEcCC
Confidence            34778999999999999999999999999999999987777777666554322222   1 2234566666665

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=96.99  E-value=0.0025  Score=61.99  Aligned_cols=75  Identities=28%  Similarity=0.389  Sum_probs=52.5

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECC-HHHHHHHHHHHC---Ccc----cchhc---c-------cccC
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT-YDRARELAETVG---GHA----LSLAD---L-------ENFN  438 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~-~~~a~~la~~~~---~~~----~~~~~---l-------~~~~  438 (465)
                      ++++|+++|+|++ |+|++++..|+++|++|++..|+ .+..+.+.+++.   ...    .++.+   +       .+ .
T Consensus         4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~-~   82 (261)
T PRK08936          4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVK-E   82 (261)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHH-H
Confidence            4778999999985 99999999999999998888874 455555555542   111    12221   1       11 2


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|+|||+++...
T Consensus        83 ~g~id~lv~~ag~~~   97 (261)
T PRK08936         83 FGTLDVMINNAGIEN   97 (261)
T ss_pred             cCCCCEEEECCCCCC
Confidence            457899999998653

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=96.99  E-value=0.0023  Score=62.04  Aligned_cols=74  Identities=34%  Similarity=0.414  Sum_probs=51.7

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---cccc------CCC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---LENF------NPE  440 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l~~~------~~~  440 (465)
                      .+++|+++|+|+ ||+|++++..|++.|++|++++|+.. ..++.+++.   ...    .++.+   +.+.      ..+
T Consensus         5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (260)
T PRK12823          5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFG   83 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            467899999998 59999999999999999999999853 445555442   111    12211   1110      245


Q ss_pred             CeeEEEecCCCC
Q 012352          441 DGMILANTTSIG  452 (465)
Q Consensus       441 ~~DilInaT~~g  452 (465)
                      ..|+|||+++..
T Consensus        84 ~id~lv~nAg~~   95 (260)
T PRK12823         84 RIDVLINNVGGT   95 (260)
T ss_pred             CCeEEEECCccc
Confidence            789999998754

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.99  E-value=0.0012  Score=59.94  Aligned_cols=69  Identities=32%  Similarity=0.348  Sum_probs=50.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-ccc----------chhcccccCCCCeeEEEecCCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-HAL----------SLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-~~~----------~~~~l~~~~~~~~DilInaT~~  451 (465)
                      +|.|+|+|..|.+++..|+..|.+|++|.|+++..+.+.+.-.. ...          -..++.+ .+.++|+||-++|.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~-a~~~ad~IiiavPs   79 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEE-ALEDADIIIIAVPS   79 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHH-HHTT-SEEEE-S-G
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHH-HhCcccEEEecccH
Confidence            58999999999999999999999999999999988888765431 110          0123333 35678999999886


Q ss_pred             C
Q 012352          452 G  452 (465)
Q Consensus       452 g  452 (465)
                      .
T Consensus        80 ~   80 (157)
T PF01210_consen   80 Q   80 (157)
T ss_dssp             G
T ss_pred             H
Confidence            4

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK08324 short chain dehydrogenase; Validated

Probab=96.99  E-value=0.0026  Score=71.10  Aligned_cols=76  Identities=36%  Similarity=0.464  Sum_probs=57.4

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC--cc----cchhc---cccc------CCCC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG--HA----LSLAD---LENF------NPED  441 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~--~~----~~~~~---l~~~------~~~~  441 (465)
                      .+.+|+++|+|+ ||+|++++..|.+.|++|++++|+.++.+.+++.++.  ..    .++.+   +.+.      ..++
T Consensus       419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~  498 (681)
T PRK08324        419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGG  498 (681)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            457899999996 7999999999999999999999999998888777653  11    12211   1110      2457


Q ss_pred             eeEEEecCCCCC
Q 012352          442 GMILANTTSIGM  453 (465)
Q Consensus       442 ~DilInaT~~gm  453 (465)
                      .|+|||+++...
T Consensus       499 iDvvI~~AG~~~  510 (681)
T PRK08324        499 VDIVVSNAGIAI  510 (681)
T ss_pred             CCEEEECCCCCC
Confidence            899999998754

>PRK08278 short chain dehydrogenase; Provisional

Probab=96.99  E-value=0.0021  Score=63.21  Aligned_cols=75  Identities=31%  Similarity=0.341  Sum_probs=51.3

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHH-------HHHHHHHHC---Ccc----cchh---ccccc---
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDR-------ARELAETVG---GHA----LSLA---DLENF---  437 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~-------a~~la~~~~---~~~----~~~~---~l~~~---  437 (465)
                      +++|+++|+|+ ||+|++++..|++.|++|+++.|+.++       .+++++++.   ...    .++.   ++...   
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~   83 (273)
T PRK08278          4 LSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAK   83 (273)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence            56899999998 599999999999999999999998653       333444332   111    1221   11110   


Q ss_pred             ---CCCCeeEEEecCCCCC
Q 012352          438 ---NPEDGMILANTTSIGM  453 (465)
Q Consensus       438 ---~~~~~DilInaT~~gm  453 (465)
                         ..+..|+|||+++...
T Consensus        84 ~~~~~g~id~li~~ag~~~  102 (273)
T PRK08278         84 AVERFGGIDICVNNASAIN  102 (273)
T ss_pred             HHHHhCCCCEEEECCCCcC
Confidence               2357899999998654

>PLN02494 adenosylhomocysteinase

Probab=96.98  E-value=0.0018  Score=68.38  Aligned_cols=69  Identities=33%  Similarity=0.381  Sum_probs=50.6

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~  450 (465)
                      ..+.||+++|+|.|.+|+.++..+...|++|+++++++.++... ...+....++++    .+..+|++|.+|+
T Consensus       250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA-~~~G~~vv~leE----al~~ADVVI~tTG  318 (477)
T PLN02494        250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQA-LMEGYQVLTLED----VVSEADIFVTTTG  318 (477)
T ss_pred             CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHH-HhcCCeeccHHH----HHhhCCEEEECCC
Confidence            45789999999999999999999999999999999998765432 222322223322    2345688888776

>PRK07856 short chain dehydrogenase; Provisional

Probab=96.98  E-value=0.0013  Score=63.68  Aligned_cols=70  Identities=23%  Similarity=0.314  Sum_probs=49.2

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc--c--cchh---ccccc------CCCCee
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH--A--LSLA---DLENF------NPEDGM  443 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~--~--~~~~---~l~~~------~~~~~D  443 (465)
                      .+++|+++|+|+ ||+|++++..|++.|++|+++.|+.++.     ..+..  .  .++.   ++.+.      ..+..|
T Consensus         3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~~-----~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   77 (252)
T PRK07856          3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPET-----VDGRPAEFHAADVRDPDQVAALVDAIVERHGRLD   77 (252)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhhh-----hcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            467899999998 5999999999999999999999987651     11111  1  1221   11110      235689


Q ss_pred             EEEecCCCC
Q 012352          444 ILANTTSIG  452 (465)
Q Consensus       444 ilInaT~~g  452 (465)
                      +|||+++..
T Consensus        78 ~vi~~ag~~   86 (252)
T PRK07856         78 VLVNNAGGS   86 (252)
T ss_pred             EEEECCCCC
Confidence            999999864

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.97  E-value=0.0068  Score=60.35  Aligned_cols=132  Identities=20%  Similarity=0.315  Sum_probs=81.8

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHH--hhhccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v--~~~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      -+.++++|++.....++.    +++.+.++.+ .++++.|+.|.+|.-..+  ...++.+++ -+.+...+..    .-|
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p-~KDVDGl~~~----N~g  128 (288)
T PRK14171         54 IKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSP-SKDIDGFHPL----NVG  128 (288)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCc-ccccccCCcc----chh
Confidence            567999999987666653    2566666666 467899999999965321  111222221 1112222211    012


Q ss_pred             eEE-EE-----eccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHH
Q 012352          346 KLF-GY-----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRAR  418 (465)
Q Consensus       346 ~l~-G~-----NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~  418 (465)
                      ++. |.     -.--.|++.-|+..           +.++.||+|+|+|-+ =.|+-++..|.+.|+.|+++.......+
T Consensus       129 ~l~~g~~~~~~PcTp~av~~lL~~y-----------~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T~~L~  197 (288)
T PRK14171        129 YLHSGISQGFIPCTALGCLAVIKKY-----------EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTHNLS  197 (288)
T ss_pred             hhhcCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHH
Confidence            221 11     11245666666653           257899999999998 5899999999999999999975433333


Q ss_pred             HH
Q 012352          419 EL  420 (465)
Q Consensus       419 ~l  420 (465)
                      +.
T Consensus       198 ~~  199 (288)
T PRK14171        198 SI  199 (288)
T ss_pred             HH
Confidence            33

>PRK06046 alanine dehydrogenase; Validated

Probab=96.97  E-value=0.0015  Score=66.57  Aligned_cols=70  Identities=23%  Similarity=0.266  Sum_probs=53.6

Q ss_pred             CcEEEEEccchhHHHHHHHHHH-CCC-eEEEEECCHHHHHHHHHHHCCc----ccchhcccccCCCCeeEEEecCCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYDRARELAETVGGH----ALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~-~G~-~v~i~~R~~~~a~~la~~~~~~----~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      .+++.|+|+|+.|+..+.++.. .++ +|+|++|+.++++++++++...    ....+++.+ .+. +|+|++|||..
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~-aDiVv~aTps~  204 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEE-ACD-CDILVTTTPSR  204 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHH-Hhh-CCEEEEecCCC
Confidence            4789999999999999998874 466 8999999999999999887421    111233333 234 89999999964

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=96.96  E-value=0.0022  Score=61.46  Aligned_cols=74  Identities=32%  Similarity=0.390  Sum_probs=53.2

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC---cc----cchhc---cccc------CCCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG---HA----LSLAD---LENF------NPED  441 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~---~~----~~~~~---l~~~------~~~~  441 (465)
                      +.+|+++|+|+ |++|++++..|.+.|++|+++.|+.++...+.+.+..   ..    .++.+   +.+.      ..+.
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGR   83 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            46789999997 6999999999999999999999998877766655431   11    12211   1110      2346


Q ss_pred             eeEEEecCCCC
Q 012352          442 GMILANTTSIG  452 (465)
Q Consensus       442 ~DilInaT~~g  452 (465)
                      +|+||++++..
T Consensus        84 ~d~vi~~ag~~   94 (251)
T PRK12826         84 LDILVANAGIF   94 (251)
T ss_pred             CCEEEECCCCC
Confidence            89999998654

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.96  E-value=0.0062  Score=60.50  Aligned_cols=133  Identities=17%  Similarity=0.247  Sum_probs=82.8

Q ss_pred             HHHHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHHh--hhccccCHHHHhccceeeEEEecc
Q 012352          271 LYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAV--KCCDEVDTVAKSIGAVNCIIRRQS  343 (465)
Q Consensus       271 ~hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v~--~~~d~~~~~A~~~gavNtv~~~~~  343 (465)
                      .-.+.++++|++.....++-    +++.+.++.+ .++.+.|+.|..|.-..+-  ..++.+++ .+.+...+..-    
T Consensus        50 ~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p-~KDVDGl~~~N----  124 (282)
T PRK14169         50 NKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDP-DKDVDGFSPVS----  124 (282)
T ss_pred             HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCc-ccCcccCChhh----
Confidence            33678999999987666654    2566777777 5778999999999653221  12222222 12222222210    


Q ss_pred             CCeEE-E----EeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHH
Q 012352          344 DGKLF-G----YNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRA  417 (465)
Q Consensus       344 ~g~l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a  417 (465)
                      -|+++ |    .-.--.|++.-|+..           +.++.||+|+|+|-+ =.|+-++..|.+.|+.|+++.......
T Consensus       125 ~g~l~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T~~l  193 (282)
T PRK14169        125 VGRLWANEPTVVASTPYGIMALLDAY-----------DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTRNL  193 (282)
T ss_pred             hHHHhcCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCCCCH
Confidence            01111 1    011245666666653           267899999999998 589999999999999999995433333


Q ss_pred             HH
Q 012352          418 RE  419 (465)
Q Consensus       418 ~~  419 (465)
                      ++
T Consensus       194 ~~  195 (282)
T PRK14169        194 KQ  195 (282)
T ss_pred             HH
Confidence            33

>PRK07201 short chain dehydrogenase; Provisional

Probab=96.96  E-value=0.0024  Score=70.79  Aligned_cols=76  Identities=26%  Similarity=0.396  Sum_probs=57.4

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchh---ccccc------CCC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLA---DLENF------NPE  440 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~---~l~~~------~~~  440 (465)
                      .+++|+++|+|+ ||+|++++..|++.|++|++++|+.++++++.+++.   ...    .++.   ++.+.      ..+
T Consensus       368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g  447 (657)
T PRK07201        368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEHG  447 (657)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            577899999998 599999999999999999999999999888877652   211    1221   11110      345


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|++||+++.+.
T Consensus       448 ~id~li~~Ag~~~  460 (657)
T PRK07201        448 HVDYLVNNAGRSI  460 (657)
T ss_pred             CCCEEEECCCCCC
Confidence            7899999998764

>PRK12747 short chain dehydrogenase; Provisional

Probab=96.95  E-value=0.0021  Score=62.08  Aligned_cols=45  Identities=33%  Similarity=0.444  Sum_probs=37.3

Q ss_pred             CCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEE-CCHHHHHHHHHHH
Q 012352          380 AGKLFVVIGAG-GAGKALAYGAKAKGARVVIAN-RTYDRARELAETV  424 (465)
Q Consensus       380 ~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~-R~~~~a~~la~~~  424 (465)
                      ++|+++|+|++ |+|++++..|++.|++|++.. |+.++.+++..++
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~   49 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEI   49 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHH
Confidence            47899999985 999999999999999998874 6677777666554

>PRK06523 short chain dehydrogenase; Provisional

Probab=96.95  E-value=0.0011  Score=64.41  Aligned_cols=73  Identities=30%  Similarity=0.246  Sum_probs=50.0

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchh---c-------ccccCCCCeeEE
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA---D-------LENFNPEDGMIL  445 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~---~-------l~~~~~~~~Dil  445 (465)
                      ..+++|+++|+|+ ||+|++++..|++.|++|+++.|+.+..  ....+.....++.   +       +.+ ..+..|+|
T Consensus         5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~id~v   81 (260)
T PRK06523          5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD--LPEGVEFVAADLTTAEGCAAVARAVLE-RLGGVDIL   81 (260)
T ss_pred             cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh--cCCceeEEecCCCCHHHHHHHHHHHHH-HcCCCCEE
Confidence            3577899999998 5999999999999999999999986542  1111100011221   1       112 34678999


Q ss_pred             EecCCCC
Q 012352          446 ANTTSIG  452 (465)
Q Consensus       446 InaT~~g  452 (465)
                      ||+++..
T Consensus        82 i~~ag~~   88 (260)
T PRK06523         82 VHVLGGS   88 (260)
T ss_pred             EECCccc
Confidence            9998854

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=96.95  E-value=0.0019  Score=65.49  Aligned_cols=73  Identities=14%  Similarity=0.171  Sum_probs=52.3

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHCC-c--c--cchh---cccccCCCCeeEEEe
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKG--ARVVIANRTYDRARELAETVGG-H--A--LSLA---DLENFNPEDGMILAN  447 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G--~~v~i~~R~~~~a~~la~~~~~-~--~--~~~~---~l~~~~~~~~DilIn  447 (465)
                      +++|++||+|+ |++|++++..|.+.|  .+|++++|+..+...+.+.+.. .  .  .++.   ++.+ .+.++|+|||
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~-~~~~iD~Vih   80 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTR-ALRGVDYVVH   80 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHH-HHhcCCEEEE
Confidence            35789999998 789999999999886  5899999987776666555532 1  1  1222   2323 3456899999


Q ss_pred             cCCCC
Q 012352          448 TTSIG  452 (465)
Q Consensus       448 aT~~g  452 (465)
                      +++..
T Consensus        81 ~Ag~~   85 (324)
T TIGR03589        81 AAALK   85 (324)
T ss_pred             CcccC
Confidence            98764

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK07074 short chain dehydrogenase; Provisional

Probab=96.94  E-value=0.0037  Score=60.52  Aligned_cols=72  Identities=26%  Similarity=0.334  Sum_probs=53.7

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-c--c--cchhc---ccc----c--CCCCeeEE
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-H--A--LSLAD---LEN----F--NPEDGMIL  445 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-~--~--~~~~~---l~~----~--~~~~~Dil  445 (465)
                      +|+++|+|+ |++|++++..|++.|++|++++|+.++++.+.+.+.. .  .  .++.+   +..    .  ..+..|++
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v   81 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDVL   81 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            478999998 5999999999999999999999999998888876632 1  1  22211   111    0  23468999


Q ss_pred             EecCCCC
Q 012352          446 ANTTSIG  452 (465)
Q Consensus       446 InaT~~g  452 (465)
                      |++++..
T Consensus        82 i~~ag~~   88 (257)
T PRK07074         82 VANAGAA   88 (257)
T ss_pred             EECCCCC
Confidence            9999764

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=96.93  E-value=0.0058  Score=61.13  Aligned_cols=134  Identities=17%  Similarity=0.214  Sum_probs=82.6

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHHh--hhccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAV--KCCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v~--~~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      .+.++++|++..-..++-    +++.+.++.+ .++++.|+.|.+|.-..+-  ..++.+++ .+.+...+..-    -|
T Consensus        61 ~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p-~KDVDGl~~~n----~g  135 (299)
T PLN02516         61 RKACAEVGIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISL-EKDVDGFHPLN----IG  135 (299)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCc-ccccCccCHhh----Hh
Confidence            567899999976555532    3577777777 5789999999999642211  11111111 11111111110    12


Q ss_pred             eEE-E--E----eccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHH
Q 012352          346 KLF-G--Y----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRA  417 (465)
Q Consensus       346 ~l~-G--~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a  417 (465)
                      ++. |  .    -.--.|++.-|+..           +.++.||+|+|+|-+ =.|+-++..|.+.|+.|+++.......
T Consensus       136 ~l~~~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T~nl  204 (299)
T PLN02516        136 KLAMKGREPLFLPCTPKGCLELLSRS-----------GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTPDP  204 (299)
T ss_pred             hHhcCCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCH
Confidence            222 1  0    11245666666652           367899999999998 589999999999999999996654444


Q ss_pred             HHHHH
Q 012352          418 RELAE  422 (465)
Q Consensus       418 ~~la~  422 (465)
                      ++...
T Consensus       205 ~~~~~  209 (299)
T PLN02516        205 ESIVR  209 (299)
T ss_pred             HHHHh
Confidence            44443

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.92  E-value=0.0057  Score=60.74  Aligned_cols=132  Identities=22%  Similarity=0.317  Sum_probs=82.0

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHH--hhhccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v--~~~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      .+..+++|++.....+.-    +++.+.++.+ .++.+.|+.|..|.-..+  ...++.+++ .+.+...+.+-    -|
T Consensus        53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p-~KDVDGl~p~N----~g  127 (284)
T PRK14170         53 QKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISY-DKDVDGFHPVN----VG  127 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCc-ccCcccCChhh----hh
Confidence            567899999987666554    2566677777 577899999999964321  111222222 12222222210    01


Q ss_pred             eEE-EE----eccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHH
Q 012352          346 KLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARE  419 (465)
Q Consensus       346 ~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~  419 (465)
                      +++ |.    -.--.|++.-|+..           +.++.||+|+|+|-| =.|+-++..|.+.|+.|+++.......++
T Consensus       128 ~l~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T~~l~~  196 (284)
T PRK14170        128 NLFIGKDSFVPCTPAGIIELIKST-----------GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQ  196 (284)
T ss_pred             HHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHH
Confidence            111 11    11146666666653           367899999999998 58999999999999999998654443343


Q ss_pred             H
Q 012352          420 L  420 (465)
Q Consensus       420 l  420 (465)
                      .
T Consensus       197 ~  197 (284)
T PRK14170        197 V  197 (284)
T ss_pred             H
Confidence            3

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.91  E-value=0.0059  Score=61.07  Aligned_cols=133  Identities=22%  Similarity=0.278  Sum_probs=82.9

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHH--hhhccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v--~~~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      .+.++++|++..-..++.    +++.+.++.+ .++.+.|+.|..|.-..+  ...++.+++ -+.+...+..-    -|
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p-~KDVDGl~~~n----~g  128 (297)
T PRK14186         54 EKACARVGIASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDP-DKDADGLHPLN----LG  128 (297)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc-ccCcccCChhh----HH
Confidence            567899999986555532    3677777777 577899999999974322  112222221 11122222110    01


Q ss_pred             eE-EEE----eccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHH
Q 012352          346 KL-FGY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARE  419 (465)
Q Consensus       346 ~l-~G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~  419 (465)
                      ++ .|.    -.--.|++.-|+..           +.++.||+|+|+|-+ =.|+-++..|.+.|+.|+++.......++
T Consensus       129 ~l~~~~~~~~PcTp~aii~lL~~~-----------~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~~l~~  197 (297)
T PRK14186        129 RLVKGEPGLRSCTPAGVMRLLRSQ-----------QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQDLAS  197 (297)
T ss_pred             HHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHH
Confidence            11 111    12256677766653           267899999999998 58999999999999999999654444444


Q ss_pred             HH
Q 012352          420 LA  421 (465)
Q Consensus       420 la  421 (465)
                      ..
T Consensus       198 ~~  199 (297)
T PRK14186        198 IT  199 (297)
T ss_pred             HH
Confidence            43

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=96.89  E-value=0.0015  Score=66.12  Aligned_cols=72  Identities=19%  Similarity=0.228  Sum_probs=48.0

Q ss_pred             CcEEEEEccchhHHHHHHHHHH-CCC-eEEEEECCHHHHHHHHHHHCC---cccchhcccccCCCCeeEEEecCCCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYDRARELAETVGG---HALSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~-~G~-~v~i~~R~~~~a~~la~~~~~---~~~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      .+++.|+|+|.-|+.-+.++.. ++. +|.|++|++++++++++++..   .....++.++ .+.++|+||.||+...
T Consensus       128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~-av~~aDii~taT~s~~  204 (313)
T PF02423_consen  128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEE-AVRGADIIVTATPSTT  204 (313)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHH-HHTTSSEEEE----SS
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhh-hcccCCEEEEccCCCC
Confidence            4689999999999998888765 567 999999999999999998865   1122234444 4678999999999875

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.88  E-value=0.002  Score=65.79  Aligned_cols=70  Identities=24%  Similarity=0.307  Sum_probs=49.7

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ..+.+|++.|+|.|.+|+.++..|...|++|++++|+.....  ...++....   ++.+ .+.++|+|+.++|..
T Consensus       146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~--~~~~~~~~~---~l~e-ll~~aDiV~l~lP~t  215 (333)
T PRK13243        146 YDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA--EKELGAEYR---PLEE-LLRESDFVSLHVPLT  215 (333)
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh--HHHcCCEec---CHHH-HHhhCCEEEEeCCCC
Confidence            467899999999999999999999999999999999865432  222332212   2222 234567777777653

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=96.88  E-value=0.0033  Score=60.33  Aligned_cols=73  Identities=19%  Similarity=0.238  Sum_probs=49.2

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEE-ECCHHHHHHHHHHH---CCcc----cchh---ccccc------CCCC
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIA-NRTYDRARELAETV---GGHA----LSLA---DLENF------NPED  441 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~-~R~~~~a~~la~~~---~~~~----~~~~---~l~~~------~~~~  441 (465)
                      ++|.++|+|+ ||+|++++..|++.|++|++. .|+..+.++..+++   +...    .++.   ++.+.      ..+.
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVGE   81 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            4789999998 699999999999999987774 55666555555443   2111    2221   11110      2457


Q ss_pred             eeEEEecCCCC
Q 012352          442 GMILANTTSIG  452 (465)
Q Consensus       442 ~DilInaT~~g  452 (465)
                      .|+|||+++..
T Consensus        82 id~li~~ag~~   92 (246)
T PRK12938         82 IDVLVNNAGIT   92 (246)
T ss_pred             CCEEEECCCCC
Confidence            89999999764

>PRK06823 ornithine cyclodeaminase; Validated

Probab=96.87  E-value=0.0028  Score=64.20  Aligned_cols=71  Identities=11%  Similarity=0.072  Sum_probs=54.7

Q ss_pred             CcEEEEEccchhHHHHHHHHHHC-CC-eEEEEECCHHHHHHHHHHHCC---cccchhcccccCCCCeeEEEecCCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYDRARELAETVGG---HALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~-G~-~v~i~~R~~~~a~~la~~~~~---~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      .+++.|+|+|..|+.-+.++... .. +|+|+||++++++++++.+..   .....++..+ ...++|+|+.||+..
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~-av~~ADIV~taT~s~  203 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAE-VAHAANLIVTTTPSR  203 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHH-HhcCCCEEEEecCCC
Confidence            57899999999999988887654 45 899999999999999887642   1112233444 467899999999865

>PRK08264 short chain dehydrogenase; Validated

Probab=96.87  E-value=0.0018  Score=61.79  Aligned_cols=70  Identities=30%  Similarity=0.448  Sum_probs=50.4

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCc--c--cchh---ccccc--CCCCeeEEEe
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGH--A--LSLA---DLENF--NPEDGMILAN  447 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~--~--~~~~---~l~~~--~~~~~DilIn  447 (465)
                      +.+++++|+|+ |++|++++..|.+.|+ +|+++.|+.++.++    .+..  .  .++.   ++.+.  .....|+||+
T Consensus         4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~   79 (238)
T PRK08264          4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD----LGPRVVPLQLDVTDPASVAAAAEAASDVTILVN   79 (238)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh----cCCceEEEEecCCCHHHHHHHHHhcCCCCEEEE
Confidence            46789999997 7999999999999999 99999999887654    2211  1  1221   11110  2346899999


Q ss_pred             cCCCC
Q 012352          448 TTSIG  452 (465)
Q Consensus       448 aT~~g  452 (465)
                      +++..
T Consensus        80 ~ag~~   84 (238)
T PRK08264         80 NAGIF   84 (238)
T ss_pred             CCCcC
Confidence            99873

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=96.86  E-value=0.0041  Score=60.32  Aligned_cols=76  Identities=24%  Similarity=0.306  Sum_probs=50.0

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHH--HHHHHHHHHCCcc----cchh---ccccc------CCC
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYD--RARELAETVGGHA----LSLA---DLENF------NPE  440 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~--~a~~la~~~~~~~----~~~~---~l~~~------~~~  440 (465)
                      .++++|+++|+|+ ||+|++++..|++.|++|++++|+..  ..+++. ..+...    .++.   ++.++      ..+
T Consensus         6 ~~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   84 (253)
T PRK08993          6 FSLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEPTETIEQVT-ALGRRFLSLTADLRKIDGIPALLERAVAEFG   84 (253)
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcchHHHHHHHH-hcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            3577899999998 49999999999999999988887532  122222 223211    1221   11110      345


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|++||+++...
T Consensus        85 ~~D~li~~Ag~~~   97 (253)
T PRK08993         85 HIDILVNNAGLIR   97 (253)
T ss_pred             CCCEEEECCCCCC
Confidence            7899999998653

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=96.86  E-value=0.0026  Score=64.11  Aligned_cols=72  Identities=21%  Similarity=0.307  Sum_probs=55.9

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHC-CC-eEEEEECCHHHHHHHHHHHCCc----ccchhcccccCCCCeeEEEecCCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYDRARELAETVGGH----ALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~-G~-~v~i~~R~~~~a~~la~~~~~~----~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ..+++.|+|+|.-|+.-+.++... .. +|.||+|++++++++++++...    ....++..+ ...++|+|+.+|+..
T Consensus       116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~e-av~~aDIV~taT~s~  193 (301)
T PRK06407        116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEA-ALRDADTITSITNSD  193 (301)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHH-HHhcCCEEEEecCCC
Confidence            358999999999999888887754 56 8999999999999999887532    112233444 467899999999865

>PRK06181 short chain dehydrogenase; Provisional

Probab=96.86  E-value=0.0036  Score=60.78  Aligned_cols=73  Identities=34%  Similarity=0.444  Sum_probs=52.9

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---ccc----c--CCCCeeE
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---LEN----F--NPEDGMI  444 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l~~----~--~~~~~Di  444 (465)
                      ++++|+|+ |++|++++..|.+.|++|++++|+.++.+++.+.+.   ...    .++.+   +..    .  ..+..|+
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~   81 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGIDI   81 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            67999998 699999999999999999999999988887766553   111    12211   111    0  2356899


Q ss_pred             EEecCCCCCC
Q 012352          445 LANTTSIGMQ  454 (465)
Q Consensus       445 lInaT~~gm~  454 (465)
                      |||+++....
T Consensus        82 vi~~ag~~~~   91 (263)
T PRK06181         82 LVNNAGITMW   91 (263)
T ss_pred             EEECCCcccc
Confidence            9999976543

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.86  E-value=0.002  Score=61.50  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=33.3

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECC
Q 012352          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (465)
Q Consensus       378 ~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~  413 (465)
                      .+++++|+|+|+||+|..++..|+..|. ++++++.+
T Consensus        25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            3667899999999999999999999999 89999987

>PRK07806 short chain dehydrogenase; Provisional

Probab=96.85  E-value=0.0032  Score=60.51  Aligned_cols=75  Identities=29%  Similarity=0.310  Sum_probs=51.4

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCH-HHHHHHHHHHC---Ccc----cchh---cccc------cCCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY-DRARELAETVG---GHA----LSLA---DLEN------FNPE  440 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~-~~a~~la~~~~---~~~----~~~~---~l~~------~~~~  440 (465)
                      +++|+++|+|+ ||+|++++..|.+.|++|+++.|+. ++.+.+.+++.   ...    .++.   ++..      ...+
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFG   83 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            56789999998 6999999999999999999999975 34555555442   111    1221   1111      0235


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+||++++...
T Consensus        84 ~~d~vi~~ag~~~   96 (248)
T PRK07806         84 GLDALVLNASGGM   96 (248)
T ss_pred             CCcEEEECCCCCC
Confidence            6899999987653

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.85  E-value=0.0064  Score=60.50  Aligned_cols=135  Identities=19%  Similarity=0.243  Sum_probs=84.6

Q ss_pred             HHHHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHHh--hhccccCHHHHhccceeeEEEecc
Q 012352          271 LYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAV--KCCDEVDTVAKSIGAVNCIIRRQS  343 (465)
Q Consensus       271 ~hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v~--~~~d~~~~~A~~~gavNtv~~~~~  343 (465)
                      .-.+.++++|++.....++-    +++.+.++.+ .++.+.|+.|..|.-..+-  ..++.+++ -+.+...+..-    
T Consensus        46 ~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p-~KDVDGl~p~n----  120 (287)
T PRK14181         46 MKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISP-DKDVDGLHPVN----  120 (287)
T ss_pred             HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCc-ccCcccCChhh----
Confidence            33678999999987666653    2677777777 5779999999999643221  12222222 12222222210    


Q ss_pred             CCeEE-EE-----eccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHHC----CCeEEEEEC
Q 012352          344 DGKLF-GY-----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAK----GARVVIANR  412 (465)
Q Consensus       344 ~g~l~-G~-----NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~~----G~~v~i~~R  412 (465)
                      -|+++ |.     -.--.|++..|+..           +.++.||+|+|+|-+ =.|+-++..|.+.    ++.|+++.+
T Consensus       121 ~g~l~~g~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs  189 (287)
T PRK14181        121 MGKLLLGETDGFIPCTPAGIIELLKYY-----------EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHS  189 (287)
T ss_pred             HHHHhcCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCC
Confidence            11221 21     11245666666653           267899999999998 5899999999988    789999975


Q ss_pred             CHHHHHHHH
Q 012352          413 TYDRARELA  421 (465)
Q Consensus       413 ~~~~a~~la  421 (465)
                      .....++..
T Consensus       190 ~T~~l~~~~  198 (287)
T PRK14181        190 QSENLTEIL  198 (287)
T ss_pred             CCCCHHHHH
Confidence            444444433

>PRK07904 short chain dehydrogenase; Provisional

Probab=96.83  E-value=0.0033  Score=61.29  Aligned_cols=73  Identities=15%  Similarity=0.121  Sum_probs=51.2

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCC-CeEEEEECCHHH-HHHHHHHHC---C-c--c--cchhc---c----ccc-CCC
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKG-ARVVIANRTYDR-ARELAETVG---G-H--A--LSLAD---L----ENF-NPE  440 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G-~~v~i~~R~~~~-a~~la~~~~---~-~--~--~~~~~---l----~~~-~~~  440 (465)
                      .+++++|+|+ ||+|++++..|++.| ++|+++.|+.++ .+++.+++.   . .  .  .++.+   +    .+. ..+
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~g   86 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAGG   86 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhcC
Confidence            3678999998 599999999999986 799999999876 676666552   1 1  1  12211   1    110 125


Q ss_pred             CeeEEEecCCCC
Q 012352          441 DGMILANTTSIG  452 (465)
Q Consensus       441 ~~DilInaT~~g  452 (465)
                      +.|++||+++..
T Consensus        87 ~id~li~~ag~~   98 (253)
T PRK07904         87 DVDVAIVAFGLL   98 (253)
T ss_pred             CCCEEEEeeecC
Confidence            799999988764

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=96.83  E-value=0.0029  Score=63.90  Aligned_cols=70  Identities=26%  Similarity=0.345  Sum_probs=52.4

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      ..+++|++.|+|-|.+|++++..|...|++|++++|. .+..+.+...+....++   .+ ...++|+|+...|.
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~-~~s~~~A~~~G~~v~sl---~E-aak~ADVV~llLPd   81 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRP-GKSFEVAKADGFEVMSV---SE-AVRTAQVVQMLLPD   81 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECc-chhhHHHHHcCCEECCH---HH-HHhcCCEEEEeCCC
Confidence            3478999999999999999999999999999999986 44445555544433333   33 34567888888874

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.83  E-value=0.0035  Score=60.72  Aligned_cols=73  Identities=26%  Similarity=0.392  Sum_probs=49.6

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECC-HHHHHHHHHHHCCcc--cchh---cc-------cccCCCCee
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT-YDRARELAETVGGHA--LSLA---DL-------ENFNPEDGM  443 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~-~~~a~~la~~~~~~~--~~~~---~l-------~~~~~~~~D  443 (465)
                      .+++|+++|+|+ ||+|++++..|++.|++|++..|+ .+.++++.+. +...  .++.   ++       .+ ..++.|
T Consensus         4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~-~~~~~~~Dl~~~~~~~~~~~~~~~-~~~~id   81 (255)
T PRK06463          4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELREK-GVFTIKCDVGNRDQVKKSKEVVEK-EFGRVD   81 (255)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhC-CCeEEEecCCCHHHHHHHHHHHHH-HcCCCC
Confidence            356899999998 599999999999999998887554 4444444432 2111  1221   11       11 245789


Q ss_pred             EEEecCCCC
Q 012352          444 ILANTTSIG  452 (465)
Q Consensus       444 ilInaT~~g  452 (465)
                      +|||+++..
T Consensus        82 ~li~~ag~~   90 (255)
T PRK06463         82 VLVNNAGIM   90 (255)
T ss_pred             EEEECCCcC
Confidence            999999875

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.82  E-value=0.01  Score=59.16  Aligned_cols=133  Identities=18%  Similarity=0.299  Sum_probs=81.2

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHH--hhhccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v--~~~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      .+.++++|++.....++-    +++.+.++.+ .++.+.|+.|..|.-..+  ...++.+++ .+.+...+.+    .-|
T Consensus        53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p-~KDVDGl~~~----N~g  127 (293)
T PRK14185         53 VKACEECGFKSSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDY-RKDVDGFHPI----NVG  127 (293)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCc-ccCcCCCCHh----hHH
Confidence            568999999987655543    2566667777 577899999999975221  111211111 1111111111    001


Q ss_pred             eEE-EE----eccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHHC----CCeEEEEECCHH
Q 012352          346 KLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAK----GARVVIANRTYD  415 (465)
Q Consensus       346 ~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~~----G~~v~i~~R~~~  415 (465)
                      +++ |.    -.--.|++.-|+..           +.++.||+|+|+|-+ =.|+-++..|.+.    ++.|+++.....
T Consensus       128 ~l~~~~~~~~PcTp~av~~lL~~~-----------~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~  196 (293)
T PRK14185        128 RMSIGLPCFVSATPNGILELLKRY-----------HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRSK  196 (293)
T ss_pred             HHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCCC
Confidence            221 11    11246666666653           257899999999998 5999999999988    579999965444


Q ss_pred             HHHHHH
Q 012352          416 RARELA  421 (465)
Q Consensus       416 ~a~~la  421 (465)
                      ...+..
T Consensus       197 nl~~~~  202 (293)
T PRK14185        197 NLKKEC  202 (293)
T ss_pred             CHHHHH
Confidence            444443

>PRK08226 short chain dehydrogenase; Provisional

Probab=96.82  E-value=0.005  Score=59.76  Aligned_cols=73  Identities=22%  Similarity=0.353  Sum_probs=50.7

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH---CCcc----cchh---cc-------cccCCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHA----LSLA---DL-------ENFNPE  440 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~---~~~~----~~~~---~l-------~~~~~~  440 (465)
                      +.+|+++|+|+ ||+|++++..|.+.|++|++++|+.+. .+..+++   +...    .++.   ++       .+ ..+
T Consensus         4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~-~~~   81 (263)
T PRK08226          4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISPEI-EKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKE-KEG   81 (263)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHH-HHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHH-HcC
Confidence            56799999997 599999999999999999999998753 3333333   2111    1221   11       11 345


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+||++++...
T Consensus        82 ~id~vi~~ag~~~   94 (263)
T PRK08226         82 RIDILVNNAGVCR   94 (263)
T ss_pred             CCCEEEECCCcCC
Confidence            7899999998643

>PRK08017 oxidoreductase; Provisional

Probab=96.82  E-value=0.0046  Score=59.64  Aligned_cols=72  Identities=28%  Similarity=0.367  Sum_probs=51.2

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchhc---cc----cc---CCCCeeEEEec
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLAD---LE----NF---NPEDGMILANT  448 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~~---l~----~~---~~~~~DilIna  448 (465)
                      |+++|+|+ |++|++++..|++.|++|+++.|+.++.+.+.+ .+...  .++.+   +.    ..   ..+..|.+||+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ii~~   81 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNS-LGFTGILLDLDDPESVERAADEVIALTDNRLYGLFNN   81 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHh-CCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence            68999999 899999999999999999999999988766543 23221  12211   11    10   12467999999


Q ss_pred             CCCCCC
Q 012352          449 TSIGMQ  454 (465)
Q Consensus       449 T~~gm~  454 (465)
                      ++.+..
T Consensus        82 ag~~~~   87 (256)
T PRK08017         82 AGFGVY   87 (256)
T ss_pred             CCCCCc
Confidence            987653

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.82  E-value=0.0039  Score=59.55  Aligned_cols=74  Identities=38%  Similarity=0.506  Sum_probs=53.8

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEE-ECCHHHHHHHHHHHCC---cc----cchhc---cccc------CCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIA-NRTYDRARELAETVGG---HA----LSLAD---LENF------NPE  440 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~-~R~~~~a~~la~~~~~---~~----~~~~~---l~~~------~~~  440 (465)
                      +.+|+++|+|+ |++|+.++..|++.|++|+++ +|+.++.+.+.+.+..   ..    .++.+   +...      ..+
T Consensus         3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (247)
T PRK05565          3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFG   82 (247)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            55789999998 799999999999999999888 9998888777665431   11    12221   1110      234


Q ss_pred             CeeEEEecCCCC
Q 012352          441 DGMILANTTSIG  452 (465)
Q Consensus       441 ~~DilInaT~~g  452 (465)
                      ..|+||++++..
T Consensus        83 ~id~vi~~ag~~   94 (247)
T PRK05565         83 KIDILVNNAGIS   94 (247)
T ss_pred             CCCEEEECCCcC
Confidence            689999998865

>PRK08177 short chain dehydrogenase; Provisional

Probab=96.82  E-value=0.0036  Score=59.48  Aligned_cols=72  Identities=24%  Similarity=0.285  Sum_probs=49.7

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchhc---cc---c-cCCCCeeEEEecCCC
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLAD---LE---N-FNPEDGMILANTTSI  451 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~~---l~---~-~~~~~~DilInaT~~  451 (465)
                      |+++|+|+ ||+|++++..|++.|++|++++|++++.+++.+.-+...  .++.+   +.   + ..-.+.|+||++++.
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag~   81 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAGI   81 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCcc
Confidence            57999997 699999999999999999999999877665533211111  22221   11   1 111368999999987


Q ss_pred             CC
Q 012352          452 GM  453 (465)
Q Consensus       452 gm  453 (465)
                      ..
T Consensus        82 ~~   83 (225)
T PRK08177         82 SG   83 (225)
T ss_pred             cC
Confidence            53

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.82  E-value=0.0037  Score=67.16  Aligned_cols=48  Identities=31%  Similarity=0.304  Sum_probs=41.6

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH  427 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~  427 (465)
                      ..+.+|+|+|+|.+|..++..++..|++|+++++++++.+ .++++|..
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle-~aeslGA~  210 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAE-QVESMGAE  210 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHcCCe
Confidence            3478999999999999999999999999999999998855 55667765

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.80  E-value=0.011  Score=58.69  Aligned_cols=131  Identities=17%  Similarity=0.265  Sum_probs=81.1

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHH--hhhccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v--~~~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      .+.++++|++.....++-    +++.+.++.+ .++.+.|+.|.+|.-..+  ...++.+++ .+.+...+..-    -|
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p-~KDVDGl~~~n----~g  128 (284)
T PRK14193         54 HRDCAEVGITSIRRDLPADATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDP-AKDADGLHPTN----LG  128 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCc-ccCccCCChhh----hh
Confidence            567899999987666553    3566667777 567899999999974211  111111111 11122222210    01


Q ss_pred             eEE-E----EeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHH--CCCeEEEEECCHHHH
Q 012352          346 KLF-G----YNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKA--KGARVVIANRTYDRA  417 (465)
Q Consensus       346 ~l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~--~G~~v~i~~R~~~~a  417 (465)
                      +++ |    .-.--.|++.-|+..           +.++.||+|+|+|.+ -.|+-++..|.+  .++.|+++.+.....
T Consensus       129 ~l~~~~~~~~PcTp~av~~ll~~~-----------~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T~~l  197 (284)
T PRK14193        129 RLVLNEPAPLPCTPRGIVHLLRRY-----------DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGTRDL  197 (284)
T ss_pred             HHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCCCCH
Confidence            121 1    112246666666653           267899999999998 589999999988  688999997654433


Q ss_pred             HH
Q 012352          418 RE  419 (465)
Q Consensus       418 ~~  419 (465)
                      ++
T Consensus       198 ~~  199 (284)
T PRK14193        198 AA  199 (284)
T ss_pred             HH
Confidence            33

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.79  E-value=0.0037  Score=60.11  Aligned_cols=74  Identities=24%  Similarity=0.384  Sum_probs=51.8

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEE-ECCHHHHHHHHHHHCCcc----cchh---ccccc------CCCC-e
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIA-NRTYDRARELAETVGGHA----LSLA---DLENF------NPED-G  442 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~-~R~~~~a~~la~~~~~~~----~~~~---~l~~~------~~~~-~  442 (465)
                      +++|+++|+|+ ||+|++++..|.+.|++|++. .|+.++.+.+.++++...    .|+.   ++.++      ..+. .
T Consensus         3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~i   82 (253)
T PRK08642          3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADELGDRAIALQADVTDREQVQAMFATATEHFGKPI   82 (253)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCC
Confidence            45789999997 599999999999999988775 567777777777665321    1221   11110      2234 8


Q ss_pred             eEEEecCCCC
Q 012352          443 MILANTTSIG  452 (465)
Q Consensus       443 DilInaT~~g  452 (465)
                      |++||+++..
T Consensus        83 d~li~~ag~~   92 (253)
T PRK08642         83 TTVVNNALAD   92 (253)
T ss_pred             eEEEECCCcc
Confidence            9999999753

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.78  E-value=0.008  Score=60.12  Aligned_cols=132  Identities=18%  Similarity=0.238  Sum_probs=83.2

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHH--hhhccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v--~~~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      .+.++++|++.....++-    +++.+.++.+ .++.+.|+.|.+|.-..+  ...++.+++ -+.+...+..-    -|
T Consensus        53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p-~KDVDGl~~~n----~g  127 (297)
T PRK14167         53 QRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDP-AKDVDGFHPEN----VG  127 (297)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCc-ccCcccCChhh----hH
Confidence            668999999987766654    2577777777 577899999999965321  112222222 12222222220    11


Q ss_pred             eEE-EEe----ccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHHC----CCeEEEEECCHH
Q 012352          346 KLF-GYN----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAK----GARVVIANRTYD  415 (465)
Q Consensus       346 ~l~-G~N----TD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~~----G~~v~i~~R~~~  415 (465)
                      +++ |.+    .--.|++.-|+..           +.++.||+|+|+|-+ =.|+-++..|.+.    ++.|+++.....
T Consensus       128 ~l~~g~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~  196 (297)
T PRK14167        128 RLVAGDARFKPCTPHGIQKLLAAA-----------GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRTD  196 (297)
T ss_pred             HHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCCC
Confidence            221 111    2246667766653           257899999999998 5899999999887    789999965444


Q ss_pred             HHHHH
Q 012352          416 RAREL  420 (465)
Q Consensus       416 ~a~~l  420 (465)
                      ..++.
T Consensus       197 ~l~~~  201 (297)
T PRK14167        197 DLAAK  201 (297)
T ss_pred             CHHHH
Confidence            33333

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=96.78  E-value=0.0093  Score=60.91  Aligned_cols=133  Identities=22%  Similarity=0.271  Sum_probs=81.6

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHH--hhhccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v--~~~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      .+..+++|++..-..+.-    +++.+.++.+ .++.+.|+.|..|.-..+  ...++.+++ -+.+...+..-    -|
T Consensus       125 ~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P-~KDVDGl~p~N----~G  199 (364)
T PLN02616        125 KKACDSVGINSFEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQLPLPSHMDEQNILNAVSI-EKDVDGFHPLN----IG  199 (364)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCc-ccCcccCChhh----hH
Confidence            567999999976444433    2566777777 567899999999975321  111111111 11111111110    01


Q ss_pred             eEE-EE------eccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHH
Q 012352          346 KLF-GY------NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRA  417 (465)
Q Consensus       346 ~l~-G~------NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a  417 (465)
                      ++. |.      -.--.|++.-|+..           +.+++||+|+|+|-+ =.|+-++..|.+.|+.|+++.......
T Consensus       200 ~L~~g~~~~~f~PCTp~avielL~~y-----------~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T~nl  268 (364)
T PLN02616        200 RLAMRGREPLFVPCTPKGCIELLHRY-----------NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNP  268 (364)
T ss_pred             HHhcCCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCCCCH
Confidence            221 10      11246677767653           267899999999998 599999999999999999996544444


Q ss_pred             HHHH
Q 012352          418 RELA  421 (465)
Q Consensus       418 ~~la  421 (465)
                      ++..
T Consensus       269 ~~~~  272 (364)
T PLN02616        269 EEIT  272 (364)
T ss_pred             HHHH
Confidence            4443

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.77  E-value=0.0034  Score=67.19  Aligned_cols=74  Identities=20%  Similarity=0.248  Sum_probs=52.5

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       378 ~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      .+.+|+|+|+|.||+|++++..|.+.|++|++++|+.....++.++++.....-..-.+ .+.++|+||-+.++.
T Consensus        12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~-~~~~~d~vV~Spgi~   85 (473)
T PRK00141         12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASD-QLDSFSLVVTSPGWR   85 (473)
T ss_pred             cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchh-HhcCCCEEEeCCCCC
Confidence            46688999999999999999999999999999999877655554554432211101111 234678888876665

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.76  E-value=0.0021  Score=66.24  Aligned_cols=36  Identities=28%  Similarity=0.377  Sum_probs=33.2

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCH
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY  414 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~  414 (465)
                      +++++|+|+|+||.|..++..|+..|+ ++++++.+.
T Consensus        26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            567899999999999999999999999 999998764

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.76  E-value=0.0037  Score=62.96  Aligned_cols=70  Identities=17%  Similarity=0.194  Sum_probs=50.6

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      .+++.|+|+|.+|.+++..|.+.|.  +|++++|++++.+.+. ..+.......+..+ .+.++|+||.|+|..
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-~~g~~~~~~~~~~~-~~~~aDvViiavp~~   77 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR-ELGLGDRVTTSAAE-AVKGADLVILCVPVG   77 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-hCCCCceecCCHHH-HhcCCCEEEECCCHH
Confidence            3689999999999999999999985  8999999988766543 33321111112222 345789999999875

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=96.76  E-value=0.0035  Score=62.99  Aligned_cols=41  Identities=20%  Similarity=0.295  Sum_probs=37.7

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET  423 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~  423 (465)
                      ++.|+|.|.+|.+++..|.+.|.+|+++||++++.+.+.+.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~   42 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKED   42 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc
Confidence            58899999999999999999999999999999998888753

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK06101 short chain dehydrogenase; Provisional

Probab=96.76  E-value=0.0069  Score=58.20  Aligned_cols=42  Identities=29%  Similarity=0.409  Sum_probs=37.9

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAET  423 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~  423 (465)
                      ++++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+.
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~   44 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ   44 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh
Confidence            57999987 6999999999999999999999999988887664

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.76  E-value=0.0025  Score=65.25  Aligned_cols=37  Identities=38%  Similarity=0.518  Sum_probs=33.7

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCH
Q 012352          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY  414 (465)
Q Consensus       378 ~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~  414 (465)
                      .+.+++|+|+|+||+|..++..|+..|. +|++++++.
T Consensus        21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            3567899999999999999999999999 999999873

>PRK07775 short chain dehydrogenase; Provisional

Probab=96.76  E-value=0.0062  Score=59.87  Aligned_cols=75  Identities=25%  Similarity=0.368  Sum_probs=54.0

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---cccc------CCCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---LENF------NPED  441 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l~~~------~~~~  441 (465)
                      .+.|+++|+|+ |++|++++..|.+.|++|+++.|+.++.+++.+++.   ...    .++.+   +..+      ..+.
T Consensus         8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   87 (274)
T PRK07775          8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGE   87 (274)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            45689999998 699999999999999999999999888777665542   211    12211   1110      2456


Q ss_pred             eeEEEecCCCCC
Q 012352          442 GMILANTTSIGM  453 (465)
Q Consensus       442 ~DilInaT~~gm  453 (465)
                      .|+||++++...
T Consensus        88 id~vi~~Ag~~~   99 (274)
T PRK07775         88 IEVLVSGAGDTY   99 (274)
T ss_pred             CCEEEECCCcCC
Confidence            899999998654

>TIGR02415 23BDH acetoin reductases

Probab=96.74  E-value=0.0053  Score=59.13  Aligned_cols=71  Identities=24%  Similarity=0.332  Sum_probs=51.7

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC---cc----cchhc---ccc----c--CCCCeeE
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG---HA----LSLAD---LEN----F--NPEDGMI  444 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~---~~----~~~~~---l~~----~--~~~~~Di  444 (465)
                      |+++|+|+ |++|++++..|.+.|++|+++.|+.++.+++.+++..   ..    .++.+   +.+    .  ..+..|+
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~   80 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDV   80 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            57999997 6999999999999999999999998888777665531   11    12211   111    0  2456899


Q ss_pred             EEecCCCC
Q 012352          445 LANTTSIG  452 (465)
Q Consensus       445 lInaT~~g  452 (465)
                      |||+++..
T Consensus        81 vi~~ag~~   88 (254)
T TIGR02415        81 MVNNAGVA   88 (254)
T ss_pred             EEECCCcC
Confidence            99999764

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK12746 short chain dehydrogenase; Provisional

Probab=96.74  E-value=0.0038  Score=60.26  Aligned_cols=46  Identities=37%  Similarity=0.508  Sum_probs=38.7

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEE-ECCHHHHHHHHHHH
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIA-NRTYDRARELAETV  424 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~-~R~~~~a~~la~~~  424 (465)
                      +++++++|+|+ |++|++++..|.+.|++|.+. .|+.++.+++.+.+
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~   51 (254)
T PRK12746          4 LDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREI   51 (254)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence            56789999998 699999999999999988774 79888877776655

>PRK06198 short chain dehydrogenase; Provisional

Probab=96.74  E-value=0.0034  Score=60.79  Aligned_cols=76  Identities=26%  Similarity=0.340  Sum_probs=54.3

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHC---Ccc----cchh---ccccc------CC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGAR-VVIANRTYDRARELAETVG---GHA----LSLA---DLENF------NP  439 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~-v~i~~R~~~~a~~la~~~~---~~~----~~~~---~l~~~------~~  439 (465)
                      .+++|+++|+|+ |++|+.++..|.+.|++ |++++|+.++...+.+.+.   ...    .++.   ++.+.      ..
T Consensus         3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (260)
T PRK06198          3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAF   82 (260)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            356899999998 59999999999999997 9999999887776665542   111    1221   11110      23


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +.+|+|||+++...
T Consensus        83 g~id~li~~ag~~~   96 (260)
T PRK06198         83 GRLDALVNAAGLTD   96 (260)
T ss_pred             CCCCEEEECCCcCC
Confidence            56899999998653

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=96.72  E-value=0.0055  Score=59.92  Aligned_cols=71  Identities=27%  Similarity=0.258  Sum_probs=50.2

Q ss_pred             cEEEEEccc-hhHHHHHHHHHHCCCeEEEEE-CCHHHHHHHHHHHCC----cc----cchhccc-------c------cC
Q 012352          382 KLFVVIGAG-GAGKALAYGAKAKGARVVIAN-RTYDRARELAETVGG----HA----LSLADLE-------N------FN  438 (465)
Q Consensus       382 k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~-R~~~~a~~la~~~~~----~~----~~~~~l~-------~------~~  438 (465)
                      +.++|+|++ |+|++++..|.+.|++|++.. |+.+++++++++++.    ..    .++.+..       +      ..
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~~   81 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFRA   81 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHHc
Confidence            478999985 999999999999999998875 567777777766631    11    1222211       0      02


Q ss_pred             CCCeeEEEecCCCC
Q 012352          439 PEDGMILANTTSIG  452 (465)
Q Consensus       439 ~~~~DilInaT~~g  452 (465)
                      .+..|+|||+++..
T Consensus        82 ~g~iD~lv~nAG~~   95 (267)
T TIGR02685        82 FGRCDVLVNNASAF   95 (267)
T ss_pred             cCCceEEEECCccC
Confidence            45789999999864

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PRK06128 oxidoreductase; Provisional

Probab=96.72  E-value=0.0043  Score=61.95  Aligned_cols=75  Identities=25%  Similarity=0.300  Sum_probs=51.2

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCH--HHHHHHHHHH---CCcc----cchhc---c-------ccc
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY--DRARELAETV---GGHA----LSLAD---L-------ENF  437 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~--~~a~~la~~~---~~~~----~~~~~---l-------~~~  437 (465)
                      .+++|++||+|+ ||+|++++..|++.|++|++..|+.  ...+++.+.+   +...    .++.+   +       .+ 
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~-  130 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVK-  130 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHH-
Confidence            367899999998 5999999999999999998887653  2344444443   2211    12211   1       11 


Q ss_pred             CCCCeeEEEecCCCCC
Q 012352          438 NPEDGMILANTTSIGM  453 (465)
Q Consensus       438 ~~~~~DilInaT~~gm  453 (465)
                      ..+..|+|||+++...
T Consensus       131 ~~g~iD~lV~nAg~~~  146 (300)
T PRK06128        131 ELGGLDILVNIAGKQT  146 (300)
T ss_pred             HhCCCCEEEECCcccC
Confidence            3457899999998653

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.71  E-value=0.0036  Score=60.64  Aligned_cols=69  Identities=14%  Similarity=0.214  Sum_probs=51.0

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCC---C-eEEEEEC-CHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKG---A-RVVIANR-TYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G---~-~v~i~~R-~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ..++.|+|+|.+|++++..|.+.|   . ++++++| +++++++++++++....  .+..+ .+.++|+||.++|..
T Consensus         4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~DiViiavp~~   77 (245)
T PRK07634          4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTT--TDWKQ-HVTSVDTIVLAMPPS   77 (245)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEe--CChHH-HHhcCCEEEEecCHH
Confidence            468999999999999999998876   3 3788888 57888888887764321  22222 234678999998865

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.69  E-value=0.0078  Score=53.69  Aligned_cols=73  Identities=22%  Similarity=0.292  Sum_probs=54.6

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCCc------ccch-hcccccCCCCeeEEEecCCCC
Q 012352          383 LFVVIGA-GGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGH------ALSL-ADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       383 ~vlV~Ga-Gg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~~------~~~~-~~l~~~~~~~~DilInaT~~g  452 (465)
                      +|.|+|+ |.+|.++++.|...+.  ++.++++++++++..+.++...      .... ....+ .+.++|+||.+++..
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~-~~~~aDivvitag~~   80 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYE-ALKDADIVVITAGVP   80 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGG-GGTTESEEEETTSTS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccccc-ccccccEEEEecccc
Confidence            6899999 9999999999999886  7999999999888877666421      0000 11222 457899999999876


Q ss_pred             CCCC
Q 012352          453 MQPK  456 (465)
Q Consensus       453 m~~~  456 (465)
                      ..|.
T Consensus        81 ~~~g   84 (141)
T PF00056_consen   81 RKPG   84 (141)
T ss_dssp             SSTT
T ss_pred             cccc
Confidence            5443

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=96.69  E-value=0.004  Score=63.37  Aligned_cols=71  Identities=20%  Similarity=0.137  Sum_probs=53.3

Q ss_pred             CcEEEEEccchhHHHHHHHHHHC-CC-eEEEEECCHHHHHHHHHHHCC---cccchhcccccCCCCeeEEEecCCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYDRARELAETVGG---HALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~-G~-~v~i~~R~~~~a~~la~~~~~---~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      .+++.|+|+|..|+.-+.++... .. +|+|++|+.++++.+++++..   .....++..+ ...++|+||.|||..
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~e-av~~aDiVitaT~s~  203 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPRE-AVEGCDILVTTTPSR  203 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHH-HhccCCEEEEecCCC
Confidence            57899999999999987777553 34 899999999999999887642   1112233334 456899999999765

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK09135 pteridine reductase; Provisional

Probab=96.68  E-value=0.007  Score=57.86  Aligned_cols=75  Identities=27%  Similarity=0.244  Sum_probs=50.9

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECC-HHHHHHHHHHHC----Cc----ccchhc---cccc------CC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT-YDRARELAETVG----GH----ALSLAD---LENF------NP  439 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~-~~~a~~la~~~~----~~----~~~~~~---l~~~------~~  439 (465)
                      ..+++++|+|+ |++|+.++..|.+.|++|+++.|+ .++.+.+.+.+.    ..    ..++.+   +...      ..
T Consensus         4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   83 (249)
T PRK09135          4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAF   83 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35689999998 599999999999999999999885 555555554432    11    112221   1110      23


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +..|+||++++...
T Consensus        84 ~~~d~vi~~ag~~~   97 (249)
T PRK09135         84 GRLDALVNNASSFY   97 (249)
T ss_pred             CCCCEEEECCCCCC
Confidence            56899999988653

>PRK06199 ornithine cyclodeaminase; Validated

Probab=96.68  E-value=0.003  Score=65.60  Aligned_cols=71  Identities=20%  Similarity=0.187  Sum_probs=55.2

Q ss_pred             CcEEEEEccchhHHHHHHHHHH-C-CC-eEEEEECCHHHHHHHHHHHCCc------ccchhcccccCCCCeeEEEecCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKA-K-GA-RVVIANRTYDRARELAETVGGH------ALSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~-~-G~-~v~i~~R~~~~a~~la~~~~~~------~~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      .+++.|+|+|..|+.-+.++.. + .. +|+||+|++++++++++++...      ....++..+ .+.++|+||.||+.
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~e-av~~ADIVvtaT~s  233 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEE-VVRGSDIVTYCNSG  233 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHH-HHcCCCEEEEccCC
Confidence            4789999999999999999876 4 36 8999999999999999887532      111233444 46789999999975


Q ss_pred             C
Q 012352          452 G  452 (465)
Q Consensus       452 g  452 (465)
                      .
T Consensus       234 ~  234 (379)
T PRK06199        234 E  234 (379)
T ss_pred             C
Confidence            4

>PRK07589 ornithine cyclodeaminase; Validated

Probab=96.66  E-value=0.0035  Score=64.30  Aligned_cols=70  Identities=19%  Similarity=0.260  Sum_probs=53.8

Q ss_pred             CcEEEEEccchhHHHHHHHHHH-CCC-eEEEEECCHHHHHHHHHHHCCc---ccchhcccccCCCCeeEEEecCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYDRARELAETVGGH---ALSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~-~G~-~v~i~~R~~~~a~~la~~~~~~---~~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      .+++.|+|+|.-|+.-+.++.. +.. +|+||+|++++++++++++...   ....+++.+ ...++|+|+.||+.
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~-av~~ADIIvtaT~S  203 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAE-AVEGADIITTVTAD  203 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHH-HHhcCCEEEEecCC
Confidence            4789999999999988877654 456 8999999999999999888532   111233444 46789999999974

>PRK12937 short chain dehydrogenase; Provisional

Probab=96.66  E-value=0.0072  Score=57.78  Aligned_cols=74  Identities=28%  Similarity=0.361  Sum_probs=50.0

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEEC-CHHHHHHHHHHHC---Cc--c--cchhc---cccc------CCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYDRARELAETVG---GH--A--LSLAD---LENF------NPE  440 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R-~~~~a~~la~~~~---~~--~--~~~~~---l~~~------~~~  440 (465)
                      +++|+++|+|+ |++|++++..|.++|++++++.| +..+.+++.+++.   ..  .  .++.+   +.+.      ..+
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFG   82 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            56789999998 69999999999999998877765 4445555555442   11  1  12211   1110      245


Q ss_pred             CeeEEEecCCCC
Q 012352          441 DGMILANTTSIG  452 (465)
Q Consensus       441 ~~DilInaT~~g  452 (465)
                      +.|+|||+++..
T Consensus        83 ~id~vi~~ag~~   94 (245)
T PRK12937         83 RIDVLVNNAGVM   94 (245)
T ss_pred             CCCEEEECCCCC
Confidence            789999999864

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=96.66  E-value=0.005  Score=59.30  Aligned_cols=74  Identities=38%  Similarity=0.531  Sum_probs=51.5

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHH--HHHHHHHHC----Ccc----cchhc----c-------cc
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDR--ARELAETVG----GHA----LSLAD----L-------EN  436 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~--a~~la~~~~----~~~----~~~~~----l-------~~  436 (465)
                      +.+|.++|+|++ |+|++++..|++.|++++++.|+.+.  .+.+.+...    ...    .|+.+    +       .+
T Consensus         3 ~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~~~   82 (251)
T COG1028           3 LSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAAEE   82 (251)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHHHH
Confidence            467899999997 99999999999999998888777553  344443333    111    23222    1       11


Q ss_pred             cCCCCeeEEEecCCCCC
Q 012352          437 FNPEDGMILANTTSIGM  453 (465)
Q Consensus       437 ~~~~~~DilInaT~~gm  453 (465)
                       ..+..|++||+++.+.
T Consensus        83 -~~g~id~lvnnAg~~~   98 (251)
T COG1028          83 -EFGRIDILVNNAGIAG   98 (251)
T ss_pred             -HcCCCCEEEECCCCCC
Confidence             3567999999999875

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=96.66  E-value=0.015  Score=57.33  Aligned_cols=141  Identities=18%  Similarity=0.260  Sum_probs=90.2

Q ss_pred             eecCCCccccccHHHHHHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCch-----HHHhhhccccC
Q 012352          257 GIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHK-----EAAVKCCDEVD  326 (465)
Q Consensus       257 ~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K-----~~v~~~~d~~~  326 (465)
                      -++|+--+....=..-.+..+++|+...+..+..    +++.+.+..+ .++.+.|.-|..|.=     +.++..++   
T Consensus        36 ilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~---  112 (283)
T COG0190          36 ILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAID---  112 (283)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcC---
Confidence            3455543332333455788999999987666642    3677777777 688999999999943     22222221   


Q ss_pred             HHHHhccceeeEEEeccCCeEE-E----EeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHH
Q 012352          327 TVAKSIGAVNCIIRRQSDGKLF-G----YNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGA  400 (465)
Q Consensus       327 ~~A~~~gavNtv~~~~~~g~l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L  400 (465)
                      + -+.+..-+..    .-|++. +    .-.--.|++..|++.           +.++.||+|+|+|.| =.||-++..|
T Consensus       113 p-~KDVDG~hp~----N~g~L~~~~~~~~PCTp~gi~~ll~~~-----------~i~l~Gk~~vVVGrS~iVGkPla~lL  176 (283)
T COG0190         113 P-EKDVDGFHPY----NLGKLAQGEPGFLPCTPAGIMTLLEEY-----------GIDLRGKNVVVVGRSNIVGKPLALLL  176 (283)
T ss_pred             c-CCCccccChh----HhcchhcCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcCcHHHHHHH
Confidence            1 0111111111    012332 2    012257888888774           267899999999999 5899999999


Q ss_pred             HHCCCeEEEEECCHHH
Q 012352          401 KAKGARVVIANRTYDR  416 (465)
Q Consensus       401 ~~~G~~v~i~~R~~~~  416 (465)
                      ...++.|+++.+....
T Consensus       177 ~~~naTVtvcHs~T~~  192 (283)
T COG0190         177 LNANATVTVCHSRTKD  192 (283)
T ss_pred             HhCCCEEEEEcCCCCC
Confidence            9999999999765433

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.66  E-value=0.015  Score=57.89  Aligned_cols=128  Identities=20%  Similarity=0.265  Sum_probs=83.2

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHHhhhccccCHHHHhccceeeEEEeccCCeE
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKL  347 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v~~~~d~~~~~A~~~gavNtv~~~~~~g~l  347 (465)
                      .+.++++|++.....++.    +++.+.++.+ .++.+.|+.|..|.-..    +|+    -+...+++.-. +. || +
T Consensus        53 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~----id~----~~i~~~I~p~K-DV-DG-l  121 (286)
T PRK14184         53 ERACEDAGIVSEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPKG----LDS----QRCLELIDPAK-DV-DG-F  121 (286)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCcCceEEEecCCCCC----CCH----HHHHhccCccc-Cc-cc-C
Confidence            567999999987666653    3577777777 57789999999996432    211    11222222221 10 11 1


Q ss_pred             EEEe-------------ccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHH----CCCeEEE
Q 012352          348 FGYN-------------TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKA----KGARVVI  409 (465)
Q Consensus       348 ~G~N-------------TD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~----~G~~v~i  409 (465)
                      +-+|             .--.|++.-|+..           +.++.||+|+|+|-+ =.|+-++..|.+    .++.|++
T Consensus       122 ~~~N~g~l~~~~~~~~PcTp~av~~lL~~~-----------~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~  190 (286)
T PRK14184        122 HPENMGRLALGLPGFRPCTPAGVMTLLERY-----------GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTV  190 (286)
T ss_pred             CHhhHHHHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEE
Confidence            1111             1245666666653           267899999999998 599999999998    7899999


Q ss_pred             EECCHHHHHHHHH
Q 012352          410 ANRTYDRARELAE  422 (465)
Q Consensus       410 ~~R~~~~a~~la~  422 (465)
                      +..+....++...
T Consensus       191 ~hs~t~~l~~~~~  203 (286)
T PRK14184        191 CHSRTPDLAEECR  203 (286)
T ss_pred             EeCCchhHHHHHH
Confidence            9876555444433

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.65  E-value=0.0049  Score=59.91  Aligned_cols=35  Identities=29%  Similarity=0.412  Sum_probs=30.8

Q ss_pred             ccCCcEEEEEccc---hhHHHHHHHHHHCCCeEEEEEC
Q 012352          378 ALAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANR  412 (465)
Q Consensus       378 ~l~~k~vlV~GaG---g~g~ai~~~L~~~G~~v~i~~R  412 (465)
                      .+++|+++|+|++   |+|++++..|++.|++|++.+|
T Consensus         3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~   40 (256)
T PRK12859          3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYW   40 (256)
T ss_pred             CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEec
Confidence            3678999999994   8999999999999999888754

>PRK08703 short chain dehydrogenase; Provisional

Probab=96.65  E-value=0.0047  Score=59.16  Aligned_cols=47  Identities=28%  Similarity=0.473  Sum_probs=42.0

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV  424 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~  424 (465)
                      ++++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++
T Consensus         3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l   50 (239)
T PRK08703          3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAI   50 (239)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHH
Confidence            367899999998 59999999999999999999999999888877765

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.64  E-value=0.0037  Score=57.83  Aligned_cols=32  Identities=22%  Similarity=0.313  Sum_probs=29.9

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC-eEEEEECCH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY  414 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~  414 (465)
                      +|+|+|+||+|..++..|+..|+ ++++++.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            48999999999999999999999 899999875

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.64  E-value=0.0036  Score=62.44  Aligned_cols=41  Identities=22%  Similarity=0.411  Sum_probs=37.6

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAE  422 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~  422 (465)
                      ++|.|+|+|-+|++++..|++.|++|++++|++++.+.+.+
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~   42 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQ   42 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence            57999999999999999999999999999999998887654

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=96.64  E-value=0.011  Score=60.06  Aligned_cols=132  Identities=17%  Similarity=0.223  Sum_probs=81.0

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHHh--hhccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAV--KCCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v~--~~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      .+.++++|++..-..++-    +++.+.++.+ .++.+.|+.|..|.-..+-  ..++.+++ -+.+...+.+-    -|
T Consensus       108 ~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p-~KDVDGl~p~N----~G  182 (345)
T PLN02897        108 IKACEETGIKSLLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRL-EKDVDGFHPLN----VG  182 (345)
T ss_pred             HHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc-ccCccCCCHHH----HH
Confidence            567899999976555543    2577777777 5778999999999742211  11111111 01111111110    01


Q ss_pred             eE-EEE------eccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHH
Q 012352          346 KL-FGY------NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRA  417 (465)
Q Consensus       346 ~l-~G~------NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a  417 (465)
                      ++ .|.      -.--.|++.-|++.           +.+++||+|+|+|-+ =.|+-++..|.+.|+.|+++.......
T Consensus       183 ~L~~~~~~~~~~PCTp~avi~LL~~~-----------~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T~nl  251 (345)
T PLN02897        183 NLAMRGREPLFVSCTPKGCVELLIRS-----------GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDP  251 (345)
T ss_pred             HHhcCCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCCCCH
Confidence            22 111      11245666666653           367899999999998 589999999999999999996543333


Q ss_pred             HHH
Q 012352          418 REL  420 (465)
Q Consensus       418 ~~l  420 (465)
                      ++.
T Consensus       252 ~~~  254 (345)
T PLN02897        252 EQI  254 (345)
T ss_pred             HHH
Confidence            333

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=96.63  E-value=0.0081  Score=57.74  Aligned_cols=71  Identities=30%  Similarity=0.328  Sum_probs=52.6

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc----------ccccCCCCe
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD----------LENFNPEDG  442 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~----------l~~~~~~~~  442 (465)
                      +|++||+|+ |++|++++..|.++|++|+++.|+.++.+.+.+++.   ...    .++.+          +.+ .....
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~~   79 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAA-EFGGL   79 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH-hcCCC
Confidence            368999997 699999999999999999999999988888776652   111    12221          111 24568


Q ss_pred             eEEEecCCCC
Q 012352          443 MILANTTSIG  452 (465)
Q Consensus       443 DilInaT~~g  452 (465)
                      |+||++++..
T Consensus        80 d~vi~~a~~~   89 (255)
T TIGR01963        80 DILVNNAGIQ   89 (255)
T ss_pred             CEEEECCCCC
Confidence            9999998754

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK12744 short chain dehydrogenase; Provisional

Probab=96.63  E-value=0.008  Score=58.28  Aligned_cols=76  Identities=26%  Similarity=0.330  Sum_probs=49.8

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEEC----CHHHHHHHHHHH---CCcc----cchh---ccccc-----
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR----TYDRARELAETV---GGHA----LSLA---DLENF-----  437 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R----~~~~a~~la~~~---~~~~----~~~~---~l~~~-----  437 (465)
                      .+++|+++|+|+ ||+|++++..|++.|++|+++.|    +.+..+++.+++   +...    .|+.   ++.+.     
T Consensus         5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~   84 (257)
T PRK12744          5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAK   84 (257)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHH
Confidence            466899999998 59999999999999998655543    344555555444   2111    2222   11110     


Q ss_pred             -CCCCeeEEEecCCCCC
Q 012352          438 -NPEDGMILANTTSIGM  453 (465)
Q Consensus       438 -~~~~~DilInaT~~gm  453 (465)
                       ..+..|+|||+++...
T Consensus        85 ~~~~~id~li~~ag~~~  101 (257)
T PRK12744         85 AAFGRPDIAINTVGKVL  101 (257)
T ss_pred             HhhCCCCEEEECCcccC
Confidence             2457899999998743

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.62  E-value=0.0053  Score=59.21  Aligned_cols=71  Identities=27%  Similarity=0.413  Sum_probs=55.9

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHH-HHHHHCCccc-----chhcccccCCCCeeEEEecCCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARE-LAETVGGHAL-----SLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~-la~~~~~~~~-----~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ++++|+|+|-.|+.+|..|.+.|.+|+++.+++++.++ +++++...++     +.+.+.+..+.++|.+|-+|+-.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d   77 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND   77 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence            46899999999999999999999999999999999888 4445554332     22334444567899999998864

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.60  E-value=0.0073  Score=63.96  Aligned_cols=74  Identities=31%  Similarity=0.378  Sum_probs=53.7

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECC--HHHHHHHHHHHCCccc--chhc---c-------cccCCCCe
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT--YDRARELAETVGGHAL--SLAD---L-------ENFNPEDG  442 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~--~~~a~~la~~~~~~~~--~~~~---l-------~~~~~~~~  442 (465)
                      .+++++++|+|+ ||+|++++..|++.|++|++++|.  .++.+++.++++...+  |+.+   +       .+ ..+..
T Consensus       207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~-~~g~i  285 (450)
T PRK08261        207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAE-RHGGL  285 (450)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHH-hCCCC
Confidence            356899999998 799999999999999999999884  4556666666653322  2211   1       11 23468


Q ss_pred             eEEEecCCCC
Q 012352          443 MILANTTSIG  452 (465)
Q Consensus       443 DilInaT~~g  452 (465)
                      |+|||+++..
T Consensus       286 d~vi~~AG~~  295 (450)
T PRK08261        286 DIVVHNAGIT  295 (450)
T ss_pred             CEEEECCCcC
Confidence            9999999865

>PRK07985 oxidoreductase; Provisional

Probab=96.59  E-value=0.0049  Score=61.49  Aligned_cols=74  Identities=24%  Similarity=0.286  Sum_probs=51.0

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECC--HHHHHHHHHHH---CCcc----cchhc---c-------ccc
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT--YDRARELAETV---GGHA----LSLAD---L-------ENF  437 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~--~~~a~~la~~~---~~~~----~~~~~---l-------~~~  437 (465)
                      .+++|+++|+|+ ||+|++++..|++.|++|++..|+  .++.+++.+.+   +...    .++.+   +       .+ 
T Consensus        46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-  124 (294)
T PRK07985         46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHK-  124 (294)
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHH-
Confidence            367899999998 599999999999999999988764  34455554433   2211    12211   1       11 


Q ss_pred             CCCCeeEEEecCCCC
Q 012352          438 NPEDGMILANTTSIG  452 (465)
Q Consensus       438 ~~~~~DilInaT~~g  452 (465)
                      ..+..|++||+++.+
T Consensus       125 ~~g~id~lv~~Ag~~  139 (294)
T PRK07985        125 ALGGLDIMALVAGKQ  139 (294)
T ss_pred             HhCCCCEEEECCCCC
Confidence            346789999998764

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.59  E-value=0.0072  Score=57.64  Aligned_cols=76  Identities=18%  Similarity=0.245  Sum_probs=51.4

Q ss_pred             CcccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH-HHHHHHHHHHCCcccchhcccccCCCCeeEEEecCC
Q 012352          374 GVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY-DRARELAETVGGHALSLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       374 ~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~-~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~  450 (465)
                      |...++++|+|||+|+|..|..=+..|.+.|++|+|++.+. +....+.++-...++. +......+..++++|-||+
T Consensus         5 Pl~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~~~~~lviaAt~   81 (210)
T COG1648           5 PLFLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDLDDAFLVIAATD   81 (210)
T ss_pred             ceEEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhhhcCceEEEEeCC
Confidence            45678999999999999999999999999999999999877 4455555443321211 1111102233667776665

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=96.58  E-value=0.0039  Score=62.73  Aligned_cols=72  Identities=19%  Similarity=0.163  Sum_probs=49.4

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC--C---c--c--cchhc---ccccCCCCeeEEE
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG--G---H--A--LSLAD---LENFNPEDGMILA  446 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~--~---~--~--~~~~~---l~~~~~~~~DilI  446 (465)
                      .+|++||+|+ |++|++++..|.+.|++|+++.|+.++.........  .   .  .  .++.+   +.+ .+.+.|+||
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~d~vi   82 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFEL-AIDGCETVF   82 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHH-HHcCCCEEE
Confidence            3689999997 789999999999999999999888765544332221  0   1  1  12222   222 244689999


Q ss_pred             ecCCCC
Q 012352          447 NTTSIG  452 (465)
Q Consensus       447 naT~~g  452 (465)
                      |+++..
T Consensus        83 h~A~~~   88 (325)
T PLN02989         83 HTASPV   88 (325)
T ss_pred             EeCCCC
Confidence            999754

>PRK12743 oxidoreductase; Provisional

Probab=96.58  E-value=0.0078  Score=58.38  Aligned_cols=72  Identities=29%  Similarity=0.294  Sum_probs=50.7

Q ss_pred             CcEEEEEccc-hhHHHHHHHHHHCCCeEEEEE-CCHHHHHHHHHHH---CCcc----cchhc----------ccccCCCC
Q 012352          381 GKLFVVIGAG-GAGKALAYGAKAKGARVVIAN-RTYDRARELAETV---GGHA----LSLAD----------LENFNPED  441 (465)
Q Consensus       381 ~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~-R~~~~a~~la~~~---~~~~----~~~~~----------l~~~~~~~  441 (465)
                      +|+++|+|++ |+|++++..|++.|++|+++. |+.++++.+.+++   +...    .++.+          +.+ ..+.
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-~~~~   80 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQ-RLGR   80 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH-HcCC
Confidence            5789999984 999999999999999988875 5667776666554   2211    22221          111 2457


Q ss_pred             eeEEEecCCCCC
Q 012352          442 GMILANTTSIGM  453 (465)
Q Consensus       442 ~DilInaT~~gm  453 (465)
                      .|+||++++...
T Consensus        81 id~li~~ag~~~   92 (256)
T PRK12743         81 IDVLVNNAGAMT   92 (256)
T ss_pred             CCEEEECCCCCC
Confidence            899999988754

>PRK09134 short chain dehydrogenase; Provisional

Probab=96.58  E-value=0.0095  Score=57.77  Aligned_cols=75  Identities=29%  Similarity=0.356  Sum_probs=51.2

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEEC-CHHHHHHHHHHH---CCcc----cchhc---cccc------CC
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR-TYDRARELAETV---GGHA----LSLAD---LENF------NP  439 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R-~~~~a~~la~~~---~~~~----~~~~~---l~~~------~~  439 (465)
                      ...+|+++|+|++ |+|++++..|.+.|++|+++.| +.++.+++.+++   +...    .|+.+   +.+.      ..
T Consensus         6 ~~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~   85 (258)
T PRK09134          6 MAAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAAL   85 (258)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4567899999995 9999999999999998877654 566666666554   2211    12211   1110      23


Q ss_pred             CCeeEEEecCCCC
Q 012352          440 EDGMILANTTSIG  452 (465)
Q Consensus       440 ~~~DilInaT~~g  452 (465)
                      +..|+|||+++..
T Consensus        86 ~~iD~vi~~ag~~   98 (258)
T PRK09134         86 GPITLLVNNASLF   98 (258)
T ss_pred             CCCCEEEECCcCC
Confidence            5689999999764

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.58  E-value=0.0037  Score=64.77  Aligned_cols=35  Identities=26%  Similarity=0.428  Sum_probs=32.5

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECC
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~  413 (465)
                      +.+++|+|+|+||+|..++..|+..|+ ++++++.+
T Consensus        39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            567899999999999999999999998 99999876

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.57  E-value=0.0063  Score=58.97  Aligned_cols=35  Identities=31%  Similarity=0.445  Sum_probs=31.9

Q ss_pred             cCCcEEEEEccc---hhHHHHHHHHHHCCCeEEEEECC
Q 012352          379 LAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       379 l~~k~vlV~GaG---g~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      +++|+++|+|++   |+|++++..|++.|++|+++.|+
T Consensus         3 l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~   40 (256)
T PRK12748          3 LMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWS   40 (256)
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence            567899999994   79999999999999999999887

>PRK06701 short chain dehydrogenase; Provisional

Probab=96.56  E-value=0.0065  Score=60.49  Aligned_cols=77  Identities=22%  Similarity=0.233  Sum_probs=52.5

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHH-HHHHHHHHHC---Ccc----cchh---ccccc------C
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYD-RARELAETVG---GHA----LSLA---DLENF------N  438 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~-~a~~la~~~~---~~~----~~~~---~l~~~------~  438 (465)
                      ..+++|+++|+|+ ||+|++++..|++.|++|++++|+.. ..+.+.+.+.   ...    .|+.   ++.+.      .
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~  121 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRE  121 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4577899999998 59999999999999999999998753 3444444432   111    1221   11110      2


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|+|||+++...
T Consensus       122 ~~~iD~lI~~Ag~~~  136 (290)
T PRK06701        122 LGRLDILVNNAAFQY  136 (290)
T ss_pred             cCCCCEEEECCcccC
Confidence            356899999998653

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.56  E-value=0.0048  Score=62.72  Aligned_cols=42  Identities=38%  Similarity=0.372  Sum_probs=38.3

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET  423 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~  423 (465)
                      .++.|+|+|.+|.+++..|++.|.+|++++|++++.+.+.+.
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~   46 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAE   46 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh
Confidence            379999999999999999999999999999999988887753

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=96.55  E-value=0.0063  Score=57.61  Aligned_cols=36  Identities=19%  Similarity=0.404  Sum_probs=33.4

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECC
Q 012352          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (465)
Q Consensus       378 ~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~  413 (465)
                      .+..++|+|+|+||+|..++..|+..|+ ++++++++
T Consensus        18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            3677899999999999999999999999 89999987

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=96.54  E-value=0.0017  Score=63.25  Aligned_cols=73  Identities=23%  Similarity=0.210  Sum_probs=50.1

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchh---cc-------cccCCCCeeEE
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA---DL-------ENFNPEDGMIL  445 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~---~l-------~~~~~~~~Dil  445 (465)
                      ..+++|+++|+|+ ||+|++++..|++.|++|++.+|+.++...-  .......++.   ++       .+ ..+..|+|
T Consensus         5 ~~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~-~~g~id~l   81 (266)
T PRK06171          5 LNLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQHE--NYQFVPTDVSSAEEVNHTVAEIIE-KFGRIDGL   81 (266)
T ss_pred             ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccccC--ceEEEEccCCCHHHHHHHHHHHHH-HcCCCCEE
Confidence            3567899999997 5999999999999999999999987654211  0000011221   11       11 34678999


Q ss_pred             EecCCCC
Q 012352          446 ANTTSIG  452 (465)
Q Consensus       446 InaT~~g  452 (465)
                      ||+++..
T Consensus        82 i~~Ag~~   88 (266)
T PRK06171         82 VNNAGIN   88 (266)
T ss_pred             EECCccc
Confidence            9999864

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=96.53  E-value=0.0064  Score=65.26  Aligned_cols=47  Identities=28%  Similarity=0.278  Sum_probs=39.9

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH  427 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~  427 (465)
                      .+.+|+|+|+|.+|.+++..+..+|++|++++++.++.+ .++.++..
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle-~a~~lGa~  209 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKE-QVQSMGAE  209 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHcCCe
Confidence            457999999999999999999999999999999998754 45556654

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=96.53  E-value=0.05  Score=51.77  Aligned_cols=119  Identities=19%  Similarity=0.229  Sum_probs=75.9

Q ss_pred             EEEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 012352           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (465)
Q Consensus        26 icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~~l~  105 (465)
                      +...+...+.+++...++.+...|+.++|+|++--   +..+.++.+.+..+.++++=.     |   .....++   .+
T Consensus        12 ~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~---~~~~~i~~l~~~~~~~~~iGa-----G---TV~~~~~---~~   77 (206)
T PRK09140         12 LIAILRGITPDEALAHVGALIEAGFRAIEIPLNSP---DPFDSIAALVKALGDRALIGA-----G---TVLSPEQ---VD   77 (206)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCc---cHHHHHHHHHHHcCCCcEEeE-----E---ecCCHHH---HH
Confidence            44458899999999999999999999999997533   234567777666655544321     1   1122233   34


Q ss_pred             HHHHhCCcEEEEeeccccchhHHHHhcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 012352          106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (465)
Q Consensus       106 ~~~~~~~~~iDiEl~~~~~~~~~l~~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKi  172 (465)
                      .+.+.|++++=.= ..+.++.+.   .+..+..++.+.|    ||  +|    +.++.++|+|++|+
T Consensus        78 ~a~~aGA~fivsp-~~~~~v~~~---~~~~~~~~~~G~~----t~--~E----~~~A~~~Gad~vk~  130 (206)
T PRK09140         78 RLADAGGRLIVTP-NTDPEVIRR---AVALGMVVMPGVA----TP--TE----AFAALRAGAQALKL  130 (206)
T ss_pred             HHHHcCCCEEECC-CCCHHHHHH---HHHCCCcEEcccC----CH--HH----HHHHHHcCCCEEEE
Confidence            6777888885331 122222222   2346778888877    33  23    45566799999997

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.52  E-value=0.0048  Score=65.29  Aligned_cols=73  Identities=18%  Similarity=0.130  Sum_probs=48.6

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH---CCcccchhcccccCCC-CeeEEEecCCCC
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSLADLENFNPE-DGMILANTTSIG  452 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~---~~~~~~~~~l~~~~~~-~~DilInaT~~g  452 (465)
                      +++|+++|+|.|++|++++..|++.|++|++++++........+++   +.....-....+ ... .+|+||++.++.
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~~~~~d~vV~s~gi~   79 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLE-LLDEDFDLMVKNPGIP   79 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHH-HhcCcCCEEEECCCCC
Confidence            4679999999999999999999999999999998754333333333   222110000111 112 389999988765

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.51  E-value=0.0066  Score=60.53  Aligned_cols=41  Identities=27%  Similarity=0.331  Sum_probs=36.3

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAE  422 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~  422 (465)
                      ++|.|+|+|-+|.+++..|+..|.+|+++++++++.+...+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~   44 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKE   44 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Confidence            57999999999999999999999999999999887665543

>PRK07069 short chain dehydrogenase; Validated

Probab=96.51  E-value=0.0068  Score=58.19  Aligned_cols=69  Identities=23%  Similarity=0.379  Sum_probs=49.7

Q ss_pred             EEEEcc-chhHHHHHHHHHHCCCeEEEEECC-HHHHHHHHHHHCC----c-c----cchhc---c-------cccCCCCe
Q 012352          384 FVVIGA-GGAGKALAYGAKAKGARVVIANRT-YDRARELAETVGG----H-A----LSLAD---L-------ENFNPEDG  442 (465)
Q Consensus       384 vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~-~~~a~~la~~~~~----~-~----~~~~~---l-------~~~~~~~~  442 (465)
                      ++|+|+ ||+|++++..|.+.|++|+++.|+ .++.+++.+++..    . .    .++.+   +       .+ ..+..
T Consensus         2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~i   80 (251)
T PRK07069          2 AFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAAD-AMGGL   80 (251)
T ss_pred             EEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHH-HcCCc
Confidence            789987 699999999999999999999998 7777777665531    1 0    12211   1       11 24568


Q ss_pred             eEEEecCCCCC
Q 012352          443 MILANTTSIGM  453 (465)
Q Consensus       443 DilInaT~~gm  453 (465)
                      |+|||+++...
T Consensus        81 d~vi~~ag~~~   91 (251)
T PRK07069         81 SVLVNNAGVGS   91 (251)
T ss_pred             cEEEECCCcCC
Confidence            99999987653

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=96.51  E-value=0.0051  Score=62.76  Aligned_cols=41  Identities=20%  Similarity=0.218  Sum_probs=37.1

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHH
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRA  417 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a  417 (465)
                      ..+.++++.|+|.|.+|++++..|...|++|+.++|+++..
T Consensus       142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~  182 (330)
T PRK12480        142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKD  182 (330)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHh
Confidence            45789999999999999999999999999999999987653

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.51  E-value=0.0077  Score=61.24  Aligned_cols=69  Identities=33%  Similarity=0.461  Sum_probs=52.9

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc-cchh---cccccCCCCeeEEEecCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA-LSLA---DLENFNPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~-~~~~---~l~~~~~~~~DilInaT~  450 (465)
                      .+++|+|+|+||.|..++..++..|++|+.++|+++| .+++.+++... +...   .... ..+.+|++|++++
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K-~e~a~~lGAd~~i~~~~~~~~~~-~~~~~d~ii~tv~  238 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEK-LELAKKLGADHVINSSDSDALEA-VKEIADAIIDTVG  238 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHH-HHHHHHhCCcEEEEcCCchhhHH-hHhhCcEEEECCC
Confidence            3789999999999999999999999999999999988 45677787543 3322   1111 1123899999988

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=96.50  E-value=0.0049  Score=64.46  Aligned_cols=87  Identities=21%  Similarity=0.265  Sum_probs=56.9

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEcc-----------------chhHHHHHHHHHHCCCeEEEEECCHHH
Q 012352          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGA-----------------GGAGKALAYGAKAKGARVVIANRTYDR  416 (465)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~Ga-----------------Gg~g~ai~~~L~~~G~~v~i~~R~~~~  416 (465)
                      ..-++..+++.+..         .++++|+++|+|+                 |.+|++++.+|..+|++|+++.++.. 
T Consensus       170 ~~~I~~~~~~~~~~---------~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~-  239 (399)
T PRK05579        170 PEEIVAAAERALSP---------KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVN-  239 (399)
T ss_pred             HHHHHHHHHHHhhh---------cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcc-
Confidence            44455555554421         3578999999987                 45999999999999999999988752 


Q ss_pred             HHHHHHHHCCcccchh---c----ccccCCCCeeEEEecCCCCCC
Q 012352          417 ARELAETVGGHALSLA---D----LENFNPEDGMILANTTSIGMQ  454 (465)
Q Consensus       417 a~~la~~~~~~~~~~~---~----l~~~~~~~~DilInaT~~gm~  454 (465)
                      .+.   ..+...+++.   +    +.+ ..+.+|++||+++++-+
T Consensus       240 ~~~---~~~~~~~dv~~~~~~~~~v~~-~~~~~DilI~~Aav~d~  280 (399)
T PRK05579        240 LPT---PAGVKRIDVESAQEMLDAVLA-ALPQADIFIMAAAVADY  280 (399)
T ss_pred             ccC---CCCcEEEccCCHHHHHHHHHH-hcCCCCEEEEccccccc
Confidence            110   0011112222   1    122 35679999999988754

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=96.50  E-value=0.0044  Score=61.67  Aligned_cols=44  Identities=32%  Similarity=0.425  Sum_probs=40.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG  426 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~  426 (465)
                      +|-+||.|.||..++..|.+.|+.++++||+++++.+++...+.
T Consensus         2 kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga   45 (286)
T COG2084           2 KIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGA   45 (286)
T ss_pred             eEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCC
Confidence            68899999999999999999999999999999998777766654

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.50  E-value=0.0049  Score=71.21  Aligned_cols=73  Identities=16%  Similarity=0.184  Sum_probs=56.5

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCC-Ce-------------EEEEECCHHHHHHHHHHH-CCcc--cch---hcccccCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKG-AR-------------VVIANRTYDRARELAETV-GGHA--LSL---ADLENFNP  439 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G-~~-------------v~i~~R~~~~a~~la~~~-~~~~--~~~---~~l~~~~~  439 (465)
                      ..|+|+|+|+|.+|+.++..|++.. ++             |+|++++.++++++++.+ +...  +++   +++.+ .+
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~-~v  646 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLK-YV  646 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHH-hh
Confidence            4679999999999999999998754 24             999999999999999887 3222  222   33433 34


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      .++|+||+++|..+
T Consensus       647 ~~~DaVIsalP~~~  660 (1042)
T PLN02819        647 SQVDVVISLLPASC  660 (1042)
T ss_pred             cCCCEEEECCCchh
Confidence            67999999999764

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.49  E-value=0.025  Score=56.60  Aligned_cols=135  Identities=19%  Similarity=0.240  Sum_probs=84.0

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHHhh--hccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVK--CCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v~~--~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      .+.++++|++.....++.    +++.+.++.+ .++.+.|+.|..|.-..+-.  .++.+++ -+.+...+..-    -|
T Consensus        53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p-~KDVDGl~~~n----~g  127 (295)
T PRK14174         53 AKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDP-AKDVDGFHPEN----LG  127 (295)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCc-cccccccChhh----HH
Confidence            667999999987776664    2577777777 57789999999997521110  1111111 11111111110    12


Q ss_pred             eEE-EE--e----ccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHH----CCCeEEEEECC
Q 012352          346 KLF-GY--N----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKA----KGARVVIANRT  413 (465)
Q Consensus       346 ~l~-G~--N----TD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~----~G~~v~i~~R~  413 (465)
                      +++ |+  +    .--.|++.-|+..           +.++.||+|+|+|-+ =.|+-++..|.+    .|+.|+++..+
T Consensus       128 ~l~~~~~~~~~~PcTp~ail~ll~~y-----------~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~  196 (295)
T PRK14174        128 RLVMGHLDKCFVSCTPYGILELLGRY-----------NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSA  196 (295)
T ss_pred             HHhcCCCCCCcCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCC
Confidence            221 21  1    2245666656542           257899999999998 589999888887    67899999887


Q ss_pred             HHHHHHHHHH
Q 012352          414 YDRARELAET  423 (465)
Q Consensus       414 ~~~a~~la~~  423 (465)
                      ....++...+
T Consensus       197 t~~l~~~~~~  206 (295)
T PRK14174        197 TKDIPSYTRQ  206 (295)
T ss_pred             chhHHHHHHh
Confidence            7665555443

>PLN00015 protochlorophyllide reductase

Probab=96.48  E-value=0.0066  Score=60.98  Aligned_cols=68  Identities=28%  Similarity=0.368  Sum_probs=50.1

Q ss_pred             EEEcc-chhHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHCC---cc----cchhc---ccc----c--CCCCeeEEE
Q 012352          385 VVIGA-GGAGKALAYGAKAKG-ARVVIANRTYDRARELAETVGG---HA----LSLAD---LEN----F--NPEDGMILA  446 (465)
Q Consensus       385 lV~Ga-Gg~g~ai~~~L~~~G-~~v~i~~R~~~~a~~la~~~~~---~~----~~~~~---l~~----~--~~~~~DilI  446 (465)
                      +|+|+ +|+|++++..|++.| ++|+++.|+.+++++++++++.   ..    .|+.+   +.+    .  ..+..|+||
T Consensus         1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~lI   80 (308)
T PLN00015          1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLV   80 (308)
T ss_pred             CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence            57887 599999999999999 8999999999998888877642   11    12211   111    0  235689999


Q ss_pred             ecCCCC
Q 012352          447 NTTSIG  452 (465)
Q Consensus       447 naT~~g  452 (465)
                      |++++.
T Consensus        81 nnAG~~   86 (308)
T PLN00015         81 CNAAVY   86 (308)
T ss_pred             ECCCcC
Confidence            999874

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.47  E-value=0.0026  Score=60.58  Aligned_cols=71  Identities=28%  Similarity=0.224  Sum_probs=48.2

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccch----hcccccCCCCeeEEEecCCCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL----ADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~----~~l~~~~~~~~DilInaT~~g  452 (465)
                      +++|+++|+|+ |++|++++..|++.|++|++++|+....  ...++.....++    +++.+ ..+..|+|||+++..
T Consensus         3 l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~--~~~~~~~~~~D~~~~~~~~~~-~~~~id~lv~~ag~~   78 (235)
T PRK06550          3 FMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPD--LSGNFHFLQLDLSDDLEPLFD-WVPSVDILCNTAGIL   78 (235)
T ss_pred             CCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccc--cCCcEEEEECChHHHHHHHHH-hhCCCCEEEECCCCC
Confidence            56789999998 5999999999999999999999985431  111110001222    22222 346789999998753

>cd08230 glucose_DH Glucose dehydrogenase

Probab=96.44  E-value=0.01  Score=60.64  Aligned_cols=70  Identities=20%  Similarity=0.284  Sum_probs=51.8

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEEC---CHHHHHHHHHHHCCcccchhc--c--cccCCCCeeEEEecCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANR---TYDRARELAETVGGHALSLAD--L--ENFNPEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R---~~~~a~~la~~~~~~~~~~~~--l--~~~~~~~~DilInaT~~  451 (465)
                      .+++|+|+|+|++|..++..++..|++|++++|   ++++. +++++++...+...+  +  .. ....+|++|++++.
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~-~~~~~~Ga~~v~~~~~~~~~~~-~~~~~d~vid~~g~  248 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKA-DIVEELGATYVNSSKTPVAEVK-LVGEFDLIIEATGV  248 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHH-HHHHHcCCEEecCCccchhhhh-hcCCCCEEEECcCC
Confidence            478999999999999999999999999999998   45554 467778765433211  1  01 22468999999974

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=96.43  E-value=0.01  Score=56.62  Aligned_cols=70  Identities=23%  Similarity=0.281  Sum_probs=48.8

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEEC-CHHHHHHHHHHHC---Cc--c--cchhc---c-------cccCCCCe
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYDRARELAETVG---GH--A--LSLAD---L-------ENFNPEDG  442 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R-~~~~a~~la~~~~---~~--~--~~~~~---l-------~~~~~~~~  442 (465)
                      |.+||+|+ |++|+.++..|++.|++|+++.| +.++.+++.+++.   ..  .  .++.+   +       .+ ..+..
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~i   79 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEA-ELGPI   79 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHH-HcCCC
Confidence            57899997 69999999999999998888877 7766666554432   11  1  12211   1       11 24568


Q ss_pred             eEEEecCCCC
Q 012352          443 MILANTTSIG  452 (465)
Q Consensus       443 DilInaT~~g  452 (465)
                      |+|||+++..
T Consensus        80 d~vi~~ag~~   89 (242)
T TIGR01829        80 DVLVNNAGIT   89 (242)
T ss_pred             cEEEECCCCC
Confidence            9999998865

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.42  E-value=0.0055  Score=59.88  Aligned_cols=36  Identities=25%  Similarity=0.352  Sum_probs=32.4

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECC
Q 012352          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (465)
Q Consensus       378 ~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~  413 (465)
                      .+++++|+|+|+||.|..++..|+..|+ ++++++.+
T Consensus        29 ~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         29 KLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             HhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            3567899999999999999999999998 99999754

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.41  E-value=0.014  Score=55.61  Aligned_cols=74  Identities=35%  Similarity=0.495  Sum_probs=50.1

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHH-HHHHHHHHHC---Ccc--c--chhc---c-------cccCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYD-RARELAETVG---GHA--L--SLAD---L-------ENFNP  439 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~-~a~~la~~~~---~~~--~--~~~~---l-------~~~~~  439 (465)
                      +++|+++|+|+ |++|++++..|.+.|++|++..|+.. +.+.+.+.+.   ...  +  ++.+   +       .+ ..
T Consensus         3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-~~   81 (248)
T PRK05557          3 LEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKA-EF   81 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH-Hc
Confidence            45789999998 69999999999999999988877654 3444544442   111  1  2211   1       11 23


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      ...|.||++++...
T Consensus        82 ~~id~vi~~ag~~~   95 (248)
T PRK05557         82 GGVDILVNNAGITR   95 (248)
T ss_pred             CCCCEEEECCCcCC
Confidence            46899999998654

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.41  E-value=0.0066  Score=60.63  Aligned_cols=40  Identities=30%  Similarity=0.331  Sum_probs=36.6

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELA  421 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la  421 (465)
                      ++|.|+|+|.+|.+++..|+..|.+|++++|++++.+.+.
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~   44 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGL   44 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence            6799999999999999999999999999999998877644

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.40  E-value=0.0052  Score=59.26  Aligned_cols=34  Identities=29%  Similarity=0.446  Sum_probs=30.9

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEEC
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANR  412 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R  412 (465)
                      +.+++|+|+|+||+|..++..|+..|+ ++++++.
T Consensus        19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~   53 (228)
T cd00757          19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDD   53 (228)
T ss_pred             HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            567899999999999999999999999 9998853

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=96.40  E-value=0.0045  Score=61.78  Aligned_cols=40  Identities=20%  Similarity=0.221  Sum_probs=36.2

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAE  422 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~  422 (465)
                      +|.|+|.|-+|.+++..|++.|.+|++++|++++.+.+.+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~   40 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLA   40 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH
Confidence            3789999999999999999999999999999998877654

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=96.39  E-value=0.0079  Score=60.35  Aligned_cols=41  Identities=17%  Similarity=0.293  Sum_probs=37.8

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET  423 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~  423 (465)
                      ++.|+|.|-+|.+++..|.+.|.+|+++||++++.+++.+.
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~   43 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDK   43 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHc
Confidence            68999999999999999999999999999999998887653

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=96.36  E-value=0.012  Score=56.38  Aligned_cols=75  Identities=31%  Similarity=0.459  Sum_probs=51.2

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEE-ECCHHHHHHHHHHHCC---cc----cchh---ccccc------CCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIA-NRTYDRARELAETVGG---HA----LSLA---DLENF------NPE  440 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~-~R~~~~a~~la~~~~~---~~----~~~~---~l~~~------~~~  440 (465)
                      +++|+++|+|+ |++|++++..|++.|++|++. .|++++.+++.+++..   ..    .++.   .+.+.      ..+
T Consensus         4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (247)
T PRK12935          4 LNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFG   83 (247)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            56899999997 599999999999999987765 4566776666655421   11    1221   11110      235


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+||++++...
T Consensus        84 ~id~vi~~ag~~~   96 (247)
T PRK12935         84 KVDILVNNAGITR   96 (247)
T ss_pred             CCCEEEECCCCCC
Confidence            6899999998753

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.35  E-value=0.0034  Score=63.55  Aligned_cols=40  Identities=18%  Similarity=0.135  Sum_probs=35.9

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHH
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDR  416 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~  416 (465)
                      ..+.+|++.|+|.|.+|+.++..|..+|++|+.++|+.++
T Consensus       132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~  171 (312)
T PRK15469        132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKS  171 (312)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence            3577899999999999999999999999999999987643

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=96.34  E-value=0.0073  Score=60.86  Aligned_cols=41  Identities=32%  Similarity=0.401  Sum_probs=37.8

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET  423 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~  423 (465)
                      ++.|+|+|.+|.+++..|++.|.+|++++|++++.+++.+.
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~   43 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINAD   43 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc
Confidence            68999999999999999999999999999999988887764

>PRK08655 prephenate dehydrogenase; Provisional

Probab=96.32  E-value=0.0088  Score=63.39  Aligned_cols=66  Identities=29%  Similarity=0.404  Sum_probs=47.7

Q ss_pred             EEEEEc-cchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCC
Q 012352          383 LFVVIG-AGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       383 ~vlV~G-aGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      ++.|+| .|++|.+++..|.+.|.+|++++|+++++.+++.+++....  .+..+ ...++|+||-|+|.
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~--~~~~e-~~~~aDvVIlavp~   68 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYA--NDNID-AAKDADIVIISVPI   68 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeec--cCHHH-HhccCCEEEEecCH
Confidence            588997 69999999999999999999999999888777777653211  11111 22345666666664

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=96.31  E-value=0.027  Score=54.44  Aligned_cols=90  Identities=21%  Similarity=0.210  Sum_probs=62.0

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCCeEE-EEEC----------CHHHHHHHHH
Q 012352          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV-IANR----------TYDRARELAE  422 (465)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~-i~~R----------~~~~a~~la~  422 (465)
                      +.|...+++..+...       +.++.+++++|.|.|.+|+.++..|.+.|++|+ |.+.          +.+...++.+
T Consensus        11 g~Gv~~~~~~~~~~~-------~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~   83 (227)
T cd01076          11 GRGVAYATREALKKL-------GIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKK   83 (227)
T ss_pred             hHHHHHHHHHHHHhc-------CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHH
Confidence            567777766544321       246889999999999999999999999999877 7777          7777766665


Q ss_pred             HHCC-------cccchhcccccCCCCeeEEEecCCCCC
Q 012352          423 TVGG-------HALSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       423 ~~~~-------~~~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      +.+.       ..++.+++-   ..++|++|-|+.-+.
T Consensus        84 ~~g~l~~~~~~~~~~~~~i~---~~~~Dvlip~a~~~~  118 (227)
T cd01076          84 EHGSVLGFPGAERITNEELL---ELDCDILIPAALENQ  118 (227)
T ss_pred             hcCCcccCCCceecCCccce---eecccEEEecCccCc
Confidence            5442       111112221   136899999986543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=96.31  E-value=0.0054  Score=59.57  Aligned_cols=75  Identities=23%  Similarity=0.227  Sum_probs=53.0

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH-CCcc--cchhc----ccccCC-CCeeEEEe
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV-GGHA--LSLAD----LENFNP-EDGMILAN  447 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~-~~~~--~~~~~----l~~~~~-~~~DilIn  447 (465)
                      ...+.++++|+|+ |++|+.++..|.+.|++|+.+.|+.+++.++.... +...  .++.+    +.+ .+ .++|+||+
T Consensus        13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~-~~~~~~d~vi~   91 (251)
T PLN00141         13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVE-AIGDDSDAVIC   91 (251)
T ss_pred             ccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHH-HhhcCCCEEEE
Confidence            3456789999997 79999999999999999999999988766543221 1111  13322    222 34 46899999


Q ss_pred             cCCCC
Q 012352          448 TTSIG  452 (465)
Q Consensus       448 aT~~g  452 (465)
                      +++..
T Consensus        92 ~~g~~   96 (251)
T PLN00141         92 ATGFR   96 (251)
T ss_pred             CCCCC
Confidence            98764

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.30  E-value=0.016  Score=55.54  Aligned_cols=74  Identities=27%  Similarity=0.430  Sum_probs=48.2

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEEC-CHHHHHHHHHHH---CCc--c--cchh----------cccccCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYDRARELAETV---GGH--A--LSLA----------DLENFNP  439 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R-~~~~a~~la~~~---~~~--~--~~~~----------~l~~~~~  439 (465)
                      +++++++|+|+ |++|++++..|++.|+++++..| +.+...+....+   +..  .  .++.          ++.+ ..
T Consensus         4 ~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~   82 (252)
T PRK06077          4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATID-RY   82 (252)
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHH-Hc
Confidence            56789999998 58999999999999998877664 344444333322   211  1  1221          1111 24


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      ...|.||++++.+.
T Consensus        83 ~~~d~vi~~ag~~~   96 (252)
T PRK06077         83 GVADILVNNAGLGL   96 (252)
T ss_pred             CCCCEEEECCCCCC
Confidence            57899999998754

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.28  E-value=0.015  Score=59.07  Aligned_cols=71  Identities=21%  Similarity=0.275  Sum_probs=52.4

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCcc-cchhc--cccc--CCCCeeEEEecCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGHA-LSLAD--LENF--NPEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~~-~~~~~--l~~~--~~~~~DilInaT~~  451 (465)
                      .+++|+|+|+|++|.+++..++..|+ +|+++++++++.+ ++.+++... ++..+  +.+.  ..+.+|++|++++.
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~-~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~  245 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLS-LAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH  245 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHH-HHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC
Confidence            47899999999999999999999999 7999999988854 666787532 33211  1110  12358999999875

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.28  E-value=0.011  Score=59.96  Aligned_cols=75  Identities=19%  Similarity=0.267  Sum_probs=55.9

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCCcc-----cchh-cccccCCCCeeEEEecCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGHA-----LSLA-DLENFNPEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~~~-----~~~~-~l~~~~~~~~DilInaT~~  451 (465)
                      .+++|.|+|+|.+|.++++.|+..|.  ++.+++++.++++..+.++....     ..+. .-.+ .+.++|+||.+++.
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~-~~~~adivIitag~   83 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYS-DCKDADLVVITAGA   83 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHH-HhCCCCEEEEecCC
Confidence            46799999999999999999999996  79999999988887776664210     1110 1112 35789999999988


Q ss_pred             CCCC
Q 012352          452 GMQP  455 (465)
Q Consensus       452 gm~~  455 (465)
                      .-.|
T Consensus        84 ~~k~   87 (315)
T PRK00066         84 PQKP   87 (315)
T ss_pred             CCCC
Confidence            5544

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=96.27  E-value=0.0075  Score=61.34  Aligned_cols=41  Identities=32%  Similarity=0.460  Sum_probs=37.0

Q ss_pred             cccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHH
Q 012352          375 VSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYD  415 (465)
Q Consensus       375 ~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~  415 (465)
                      .+.++.||++-|+|.|.+|+++++.++..|++|..++|.+.
T Consensus       140 ~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~  180 (324)
T COG1052         140 LGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN  180 (324)
T ss_pred             cccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC
Confidence            34578999999999999999999999988999999999864

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.27  E-value=0.025  Score=56.60  Aligned_cols=131  Identities=18%  Similarity=0.287  Sum_probs=80.6

Q ss_pred             HHHHHHcCCCeeEeccc--c--ccHHHHHHHh-hcCCCCeeEeccCchHHH--hhhccccCHHHHhccceeeEEEeccCC
Q 012352          273 NEAFKSVGFNGVFVHLL--V--DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG  345 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~--~--~~l~~~~~~l-~~~~~~G~~vT~P~K~~v--~~~~d~~~~~A~~~gavNtv~~~~~~g  345 (465)
                      .+.++++|++.....++  +  +++.+.++.+ .++.+.|+.|.+|.-..+  -..++.+++ .+.+...+..-    -|
T Consensus        55 ~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p-~KDVDGl~~~n----~g  129 (297)
T PRK14168         55 IKTAHRLGFHEIQDNQSVDITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDP-DKDVDGFHPVN----VG  129 (297)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc-cccccccChhh----HH
Confidence            66789999997655443  2  3577777777 577899999999963211  111222221 12222222210    01


Q ss_pred             eE-EEE------eccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHHC----CCeEEEEECC
Q 012352          346 KL-FGY------NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAK----GARVVIANRT  413 (465)
Q Consensus       346 ~l-~G~------NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~~----G~~v~i~~R~  413 (465)
                      ++ .|.      -.--.|++.-|+..           +.++.||+|+|+|-+ =.|+-++..|.+.    ++.|+++.+.
T Consensus       130 ~l~~~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~  198 (297)
T PRK14168        130 RLMIGGDEVKFLPCTPAGIQEMLVRS-----------GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR  198 (297)
T ss_pred             HHhcCCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC
Confidence            11 111      11246666666653           367899999999998 5999999999988    6899999654


Q ss_pred             HHHHHH
Q 012352          414 YDRARE  419 (465)
Q Consensus       414 ~~~a~~  419 (465)
                      ....++
T Consensus       199 T~~l~~  204 (297)
T PRK14168        199 SKNLAR  204 (297)
T ss_pred             CcCHHH
Confidence            333333

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.26  E-value=0.01  Score=59.70  Aligned_cols=41  Identities=24%  Similarity=0.297  Sum_probs=37.4

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAE  422 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~  422 (465)
                      ++|.|+|+|-+|.+++..|+..|++|++++++.++.+.+.+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~   45 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARG   45 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence            57999999999999999999999999999999988877655

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=96.26  E-value=0.011  Score=56.57  Aligned_cols=70  Identities=23%  Similarity=0.351  Sum_probs=49.7

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEE-EECCHHHHHHHHHHHC---Cc--c--cchhc---c-------cccCCCCe
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVI-ANRTYDRARELAETVG---GH--A--LSLAD---L-------ENFNPEDG  442 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i-~~R~~~~a~~la~~~~---~~--~--~~~~~---l-------~~~~~~~~  442 (465)
                      |+++|+|+ |++|++++..|.++|++|++ +.|+.++.+++..++.   ..  .  .++.+   +       .+ ..+..
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~-~~~~i   80 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQ-HDEPL   80 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHH-hCCCC
Confidence            57999998 69999999999999998876 5788887777665542   11  1  12211   1       11 24678


Q ss_pred             eEEEecCCCC
Q 012352          443 MILANTTSIG  452 (465)
Q Consensus       443 DilInaT~~g  452 (465)
                      |+|||+++..
T Consensus        81 d~vi~~ag~~   90 (247)
T PRK09730         81 AALVNNAGIL   90 (247)
T ss_pred             CEEEECCCCC
Confidence            9999999864

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=96.26  E-value=0.012  Score=58.52  Aligned_cols=67  Identities=21%  Similarity=0.213  Sum_probs=47.3

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      +|.|+|.|-+|.+++.+|.+.|.+|++++|++++.+.+.+. +.......+. + ...++|+||-|+|..
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~-g~~~~~~~~~-~-~~~~aDlVilavp~~   68 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIER-GLVDEASTDL-S-LLKDCDLVILALPIG   68 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC-CCcccccCCH-h-HhcCCCEEEEcCCHH
Confidence            58899999999999999999999999999998887766442 2100000111 1 234678888887743

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.25  E-value=0.0032  Score=57.69  Aligned_cols=65  Identities=23%  Similarity=0.266  Sum_probs=48.4

Q ss_pred             EEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchhc---ccccCCCCeeEEEecCCCC
Q 012352          384 FVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLAD---LENFNPEDGMILANTTSIG  452 (465)
Q Consensus       384 vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~~---l~~~~~~~~DilInaT~~g  452 (465)
                      |+|+|+ |.+|+.++..|.+.|++|+++.|++++.++   ..+...  .++.+   +.+ .+.++|.||++.+..
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~-al~~~d~vi~~~~~~   71 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKA-ALKGADAVIHAAGPP   71 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHH-HHTTSSEEEECCHST
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---ccccccceeeehhhhhhhh-hhhhcchhhhhhhhh
Confidence            689997 899999999999999999999999998777   111122  23322   333 456789999988643

...

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.24  E-value=0.01  Score=60.26  Aligned_cols=40  Identities=30%  Similarity=0.323  Sum_probs=35.9

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELA  421 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la  421 (465)
                      ++|.|+|+|-||+.++..++..|++|++++++++..+.+.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~   47 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALR   47 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Confidence            6899999999999999999999999999999988765543

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=96.23  E-value=0.013  Score=59.95  Aligned_cols=73  Identities=16%  Similarity=0.071  Sum_probs=52.9

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC--c--c--cchh---cccccCCCCeeEEEec
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG--H--A--LSLA---DLENFNPEDGMILANT  448 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~--~--~--~~~~---~l~~~~~~~~DilIna  448 (465)
                      -+++++||+|+ |.+|+.++..|.+.|++|+++.|+.++.+.+...+..  .  .  .++.   ++.+ .+.++|.||++
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-~~~~~d~Vih~   86 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDE-AVKGCDGVFHV   86 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHH-HHcCCCEEEEC
Confidence            45789999997 7899999999999999999999998877766555421  1  1  1222   1222 24568999999


Q ss_pred             CCCC
Q 012352          449 TSIG  452 (465)
Q Consensus       449 T~~g  452 (465)
                      ++..
T Consensus        87 A~~~   90 (353)
T PLN02896         87 AASM   90 (353)
T ss_pred             Cccc
Confidence            8754

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.22  E-value=0.012  Score=58.15  Aligned_cols=36  Identities=22%  Similarity=0.357  Sum_probs=32.7

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECC
Q 012352          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (465)
Q Consensus       378 ~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~  413 (465)
                      .+.+++|+|+|.||+|..++..|+..|+ ++++++.+
T Consensus        27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            3678899999999999999999999998 99998865

>PRK12827 short chain dehydrogenase; Provisional

Probab=96.22  E-value=0.013  Score=55.91  Aligned_cols=75  Identities=27%  Similarity=0.384  Sum_probs=50.4

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEEC----CHHHHHHHHHHHC---Ccc----cchhc---cccc------
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR----TYDRARELAETVG---GHA----LSLAD---LENF------  437 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R----~~~~a~~la~~~~---~~~----~~~~~---l~~~------  437 (465)
                      +++++++|+|+ |++|++++..|.+.|++|+++.|    +.++.+++.+++.   ...    .++.+   +...      
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   83 (249)
T PRK12827          4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVE   83 (249)
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            56789999998 69999999999999999888654    4555566655542   111    12211   1110      


Q ss_pred             CCCCeeEEEecCCCCC
Q 012352          438 NPEDGMILANTTSIGM  453 (465)
Q Consensus       438 ~~~~~DilInaT~~gm  453 (465)
                      .....|.||++++...
T Consensus        84 ~~~~~d~vi~~ag~~~   99 (249)
T PRK12827         84 EFGRLDILVNNAGIAT   99 (249)
T ss_pred             HhCCCCEEEECCCCCC
Confidence            2356899999997653

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=96.22  E-value=0.0079  Score=57.86  Aligned_cols=38  Identities=32%  Similarity=0.457  Sum_probs=34.2

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCH
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      ..+++|+++|+|+ |++|++++..|.+.|++|++++|+.
T Consensus         4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~   42 (252)
T PRK08220          4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF   42 (252)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch
Confidence            3467899999998 5899999999999999999999986

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=96.21  E-value=0.0081  Score=61.29  Aligned_cols=73  Identities=19%  Similarity=0.091  Sum_probs=49.0

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC--Cc--c--cchh---ccccc-CCCCeeEEEec
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG--GH--A--LSLA---DLENF-NPEDGMILANT  448 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~--~~--~--~~~~---~l~~~-~~~~~DilIna  448 (465)
                      ++|++||+|+ |++|++++..|.+.|++|++++|+........+.++  ..  .  .++.   ++.+. ...++|+|||+
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih~   82 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFHL   82 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEEC
Confidence            5789999997 789999999999999999999998765444333222  11  1  1221   22221 11246999999


Q ss_pred             CCCC
Q 012352          449 TSIG  452 (465)
Q Consensus       449 T~~g  452 (465)
                      ++..
T Consensus        83 A~~~   86 (349)
T TIGR02622        83 AAQP   86 (349)
T ss_pred             Cccc
Confidence            9754

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.21  E-value=0.0092  Score=59.23  Aligned_cols=66  Identities=17%  Similarity=0.221  Sum_probs=48.2

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC----eEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGA----RVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~----~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~  450 (465)
                      +++.+||+|-+|.+++..|.+.|.    +|++++|+.++++.+.++++....  .+..+ ...++|+||-|.+
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~--~~~~e-~~~~aDiIiLavk   72 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITIT--TNNNE-VANSADILILSIK   72 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEe--CCcHH-HHhhCCEEEEEeC
Confidence            479999999999999999998873    699999999999888876653221  11111 1234577776665

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=96.21  E-value=0.01  Score=60.41  Aligned_cols=71  Identities=18%  Similarity=0.212  Sum_probs=56.4

Q ss_pred             CcEEEEEccchhHHHHHHHHHHC-CC-eEEEEECCHHHHHHHHHHHCCc----ccchhcccccCCCCeeEEEecCCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYDRARELAETVGGH----ALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~-G~-~v~i~~R~~~~a~~la~~~~~~----~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      -+.+.|||+|..|+.-+.++... ++ +|.|++|+++.+++++..+...    +...++..+ .+.++|+||.||+.-
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~-av~~aDiIvt~T~s~  206 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEE-AVEGADIVVTATPST  206 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHH-HhhcCCEEEEecCCC
Confidence            46899999999999999998764 66 8999999999999999877532    223344444 567899999999864

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=96.20  E-value=0.0099  Score=56.28  Aligned_cols=44  Identities=27%  Similarity=0.425  Sum_probs=36.2

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHH-HHHHHHHHHC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYD-RARELAETVG  425 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~-~a~~la~~~~  425 (465)
                      +++.|+|+|.+|.+++..|+..|++|+|.+|+.+ +.+.+++.++
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~   46 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALG   46 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhc
Confidence            5789999999999999999999999999966554 5555566554

>PRK07041 short chain dehydrogenase; Provisional

Probab=96.19  E-value=0.016  Score=54.92  Aligned_cols=69  Identities=32%  Similarity=0.415  Sum_probs=50.0

Q ss_pred             EEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC--Cc--c--cchh---ccccc--CCCCeeEEEecCCCC
Q 012352          385 VVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG--GH--A--LSLA---DLENF--NPEDGMILANTTSIG  452 (465)
Q Consensus       385 lV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~--~~--~--~~~~---~l~~~--~~~~~DilInaT~~g  452 (465)
                      +|+|+ ||+|++++..|++.|++|+++.|+.++++.+.+.++  ..  .  .++.   ++.+.  ..+.+|++||+++..
T Consensus         1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag~~   80 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVITAADT   80 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEECCCCC
Confidence            47877 599999999999999999999999988888776662  21  1  1221   11110  245689999999875


Q ss_pred             C
Q 012352          453 M  453 (465)
Q Consensus       453 m  453 (465)
                      .
T Consensus        81 ~   81 (230)
T PRK07041         81 P   81 (230)
T ss_pred             C
Confidence            4

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.19  E-value=0.01  Score=56.84  Aligned_cols=41  Identities=32%  Similarity=0.575  Sum_probs=37.1

Q ss_pred             EEEEEc-cchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Q 012352          383 LFVVIG-AGGAGKALAYGAKAKGARVVIANRTYDRARELAET  423 (465)
Q Consensus       383 ~vlV~G-aGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~  423 (465)
                      ++.|+| +|.+|.+++..|.+.|.+|++++|++++++.+++.
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~   43 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAK   43 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHH
Confidence            588997 79999999999999999999999999998887764

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.18  E-value=0.015  Score=56.02  Aligned_cols=72  Identities=19%  Similarity=0.227  Sum_probs=48.9

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCH-HHHHHHHHHHC---Cc--c--cchhc----------ccccCCCC
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY-DRARELAETVG---GH--A--LSLAD----------LENFNPED  441 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~-~~a~~la~~~~---~~--~--~~~~~----------l~~~~~~~  441 (465)
                      +|+++|+|+ |++|++++..|++.|++|++++|+. +..++..+.+.   ..  .  .++.+          +.+ ..+.
T Consensus         2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~   80 (256)
T PRK12745          2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQA-AWGR   80 (256)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH-hcCC
Confidence            368999988 6999999999999999999998864 44444444432   11  1  12211          111 2357


Q ss_pred             eeEEEecCCCCC
Q 012352          442 GMILANTTSIGM  453 (465)
Q Consensus       442 ~DilInaT~~gm  453 (465)
                      .|+||++++...
T Consensus        81 id~vi~~ag~~~   92 (256)
T PRK12745         81 IDCLVNNAGVGV   92 (256)
T ss_pred             CCEEEECCccCC
Confidence            899999997653

>PRK06953 short chain dehydrogenase; Provisional

Probab=96.18  E-value=0.012  Score=55.80  Aligned_cols=70  Identities=23%  Similarity=0.327  Sum_probs=49.5

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchh---cccc----cCCCCeeEEEecCCC
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLA---DLEN----FNPEDGMILANTTSI  451 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~---~l~~----~~~~~~DilInaT~~  451 (465)
                      |+++|+|+ |++|++++..|.+.|++|+++.|+.++.+++... +...  .++.   ++.+    ......|++|++++.
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag~   80 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQAL-GAEALALDVADPASVAGLAWKLDGEALDAAVYVAGV   80 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHHhc-cceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCCc
Confidence            57899987 6999999999999999999999998887776542 2221  2221   1111    111358999999876


Q ss_pred             C
Q 012352          452 G  452 (465)
Q Consensus       452 g  452 (465)
                      .
T Consensus        81 ~   81 (222)
T PRK06953         81 Y   81 (222)
T ss_pred             c
Confidence            4

>PRK08219 short chain dehydrogenase; Provisional

Probab=96.17  E-value=0.019  Score=54.15  Aligned_cols=71  Identities=20%  Similarity=0.305  Sum_probs=50.7

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-cc--cchh---ccccc--CCCCeeEEEecCCC
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-HA--LSLA---DLENF--NPEDGMILANTTSI  451 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-~~--~~~~---~l~~~--~~~~~DilInaT~~  451 (465)
                      .|+++|+|+ |++|++++..|.+. ++|++++|+.++.+++.+.... ..  .++.   ++.+.  ...+.|+||++++.
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~   81 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHNAGV   81 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEECCCc
Confidence            468999998 68999999999998 9999999998887777654422 11  2222   22211  22368999999876


Q ss_pred             C
Q 012352          452 G  452 (465)
Q Consensus       452 g  452 (465)
                      .
T Consensus        82 ~   82 (227)
T PRK08219         82 A   82 (227)
T ss_pred             C
Confidence            4

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.16  E-value=0.0095  Score=57.70  Aligned_cols=35  Identities=23%  Similarity=0.374  Sum_probs=32.1

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECC
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~  413 (465)
                      +++++|+|+|.||+|..++..|+..|+ ++++++.+
T Consensus         9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D   44 (231)
T cd00755           9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD   44 (231)
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            567899999999999999999999999 99999864

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=96.16  E-value=0.0096  Score=59.87  Aligned_cols=72  Identities=21%  Similarity=0.167  Sum_probs=48.9

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC-----C--cc--cchhc---ccccCCCCeeEEE
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG-----G--HA--LSLAD---LENFNPEDGMILA  446 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~-----~--~~--~~~~~---l~~~~~~~~DilI  446 (465)
                      .+|+++|+|+ |.+|+.++..|.+.|++|++..|+..+.+.+.....     .  ..  .++.+   +.+ .+.++|+||
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-~~~~~d~vi   82 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQ-AIEGCDAVF   82 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHH-HHhCCCEEE
Confidence            4789999997 789999999999999999988888765444332211     1  11  12211   222 245689999


Q ss_pred             ecCCCC
Q 012352          447 NTTSIG  452 (465)
Q Consensus       447 naT~~g  452 (465)
                      ++++..
T Consensus        83 h~A~~~   88 (322)
T PLN02986         83 HTASPV   88 (322)
T ss_pred             EeCCCc
Confidence            998753

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.15  E-value=0.014  Score=58.35  Aligned_cols=39  Identities=23%  Similarity=0.319  Sum_probs=35.9

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRAREL  420 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~l  420 (465)
                      ++|.|+|+|-+|.+++..|+..|++|+++++++++.+..
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~   42 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNA   42 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHH
Confidence            689999999999999999999999999999999887654

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.15  E-value=0.012  Score=57.90  Aligned_cols=44  Identities=27%  Similarity=0.446  Sum_probs=39.1

Q ss_pred             cEEEEEccchhHHHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKG---ARVVIANRTYDRARELAETVG  425 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G---~~v~i~~R~~~~a~~la~~~~  425 (465)
                      .++.|+|+|.+|.+++..|.+.|   .+|++++|++++++.+.+.++
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g   49 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYG   49 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcC
Confidence            36899999999999999999988   589999999999888887665

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.14  E-value=0.013  Score=58.95  Aligned_cols=40  Identities=30%  Similarity=0.325  Sum_probs=36.8

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAE  422 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~  422 (465)
                      +|.|+|.|-+|.+++..|.+.|.+|+++||++++.+.+.+
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~   41 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAE   41 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Confidence            5889999999999999999999999999999999888754

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=96.14  E-value=0.014  Score=59.12  Aligned_cols=68  Identities=22%  Similarity=0.275  Sum_probs=45.3

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH-HHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCC
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY-DRARELAETVGGHALSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~-~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      +++|++.|+|.|.+|.+++..|.+.|.+|+++.|.. ++.+.+. +.+....+   ..+ ...++|+||.++|-
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-~~Gv~~~s---~~e-a~~~ADiVvLaVpp   69 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-EDGFKVGT---VEE-AIPQADLIMNLLPD   69 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-HCCCEECC---HHH-HHhcCCEEEEeCCc
Confidence            357899999999999999999999999887766553 3333333 33432222   112 23456777777763

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.13  E-value=0.014  Score=58.91  Aligned_cols=39  Identities=26%  Similarity=0.217  Sum_probs=35.2

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRAREL  420 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~l  420 (465)
                      ++|.|+|+|-+|.+++..|++.|++|++++|+++..+..
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~   41 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAA   41 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHH
Confidence            469999999999999999999999999999998876654

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.13  E-value=0.013  Score=58.90  Aligned_cols=40  Identities=20%  Similarity=0.228  Sum_probs=36.5

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAE  422 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~  422 (465)
                      ++.++|.|.+|.+++..|.+.|.+|+++||++++++.+.+
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~   41 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGK   41 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence            5789999999999999999999999999999999887753

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.12  E-value=0.014  Score=62.65  Aligned_cols=73  Identities=23%  Similarity=0.279  Sum_probs=51.6

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCCC
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      +.+++|+|+|.|++|++++..|...|++|+++++.+.+.+.+ ++.+.....-....+ .+..+|+||.+.++..
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l-~~~g~~~~~~~~~~~-~l~~~D~VV~SpGi~~   82 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPH-AERGVATVSTSDAVQ-QIADYALVVTSPGFRP   82 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-HhCCCEEEcCcchHh-HhhcCCEEEECCCCCC
Confidence            357899999999999999999999999999999876655443 333432211111111 2346799999988764

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=96.11  E-value=0.0077  Score=64.49  Aligned_cols=83  Identities=20%  Similarity=0.277  Sum_probs=60.1

Q ss_pred             ccCCcEEEEEccch-hHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCc-----c----cchhc---ccccCCC--C
Q 012352          378 ALAGKLFVVIGAGG-AGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGH-----A----LSLAD---LENFNPE--D  441 (465)
Q Consensus       378 ~l~~k~vlV~GaGg-~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~-----~----~~~~~---l~~~~~~--~  441 (465)
                      .++||+|+|+|+|| +|+.+|..+++.+. ++.+++|++-+...+..++...     .    .++.|   +.. .+.  +
T Consensus       247 ~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~-~~~~~k  325 (588)
T COG1086         247 MLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVER-AMEGHK  325 (588)
T ss_pred             HcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHH-HHhcCC
Confidence            46899999999975 99999999999998 9999999999988887777542     0    12222   222 223  4


Q ss_pred             eeEEEecCCCCCCCCCCCCC
Q 012352          442 GMILANTTSIGMQPKVDETP  461 (465)
Q Consensus       442 ~DilInaT~~gm~~~~~~~p  461 (465)
                      .|+|++|+..=.-|.....|
T Consensus       326 vd~VfHAAA~KHVPl~E~nP  345 (588)
T COG1086         326 VDIVFHAAALKHVPLVEYNP  345 (588)
T ss_pred             CceEEEhhhhccCcchhcCH
Confidence            89999998765444333334

>PRK07574 formate dehydrogenase; Provisional

Probab=96.10  E-value=0.0082  Score=62.46  Aligned_cols=38  Identities=24%  Similarity=0.296  Sum_probs=35.6

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      ..+.+|++.|+|.|.+|+.++..|+..|++|+.++|+.
T Consensus       188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~  225 (385)
T PRK07574        188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHR  225 (385)
T ss_pred             eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC
Confidence            45889999999999999999999999999999999986

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=96.09  E-value=0.01  Score=59.21  Aligned_cols=41  Identities=22%  Similarity=0.272  Sum_probs=36.9

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAE  422 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~  422 (465)
                      .++.|+|.|.+|.+++..|++.|.+|++++|++++.+.+.+
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~   43 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIA   43 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH
Confidence            36899999999999999999999999999999998877653

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=96.08  E-value=0.63  Score=51.17  Aligned_cols=210  Identities=14%  Similarity=0.136  Sum_probs=139.6

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEE----ecC---CCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 012352           34 SVDKMVVDMGKANASGADLVEIR----LDG---LKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (465)
Q Consensus        34 t~~e~~~~~~~~~~~~~D~vElR----lD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~~l~  105 (465)
                      +.++.+.-++.+...|.+.+|.-    .|.   |-.-++.+.++.+++.. +.++..-+|..+-=|...-.++-..+.++
T Consensus        19 ~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~   98 (582)
T TIGR01108        19 RTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVK   98 (582)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHH
Confidence            44555555555566799999994    452   22335666787776543 56777778977776765556666677888


Q ss_pred             HHHHhCCcEEEEeeccc--cchhHHHHhcCCCCcEEEEEe-ccCCCCC--CHHHHHHHHHHHHHcCCCEEEEEeec--CC
Q 012352          106 LAMELGADYIDVELQVA--REFNDSIRGKKPEKCKVIVSS-HNYQYTP--SVEDLSNLVARIQASGADIVKFATTA--LD  178 (465)
Q Consensus       106 ~~~~~~~~~iDiEl~~~--~~~~~~l~~~~~~~~~iI~S~-H~f~~tp--s~~el~~~~~~~~~~gadivKia~~~--~~  178 (465)
                      .+.+.|++.+-|=....  +.....+..++..+..+.++. +.+  +|  +.+.+.+..+++.+.|||.+=|+=|.  -+
T Consensus        99 ~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~--~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~  176 (582)
T TIGR01108        99 KAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTT--SPVHTLETYLDLAEELLEMGVDSICIKDMAGILT  176 (582)
T ss_pred             HHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEecc--CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcC
Confidence            99999999887754332  222223333344455565542 233  55  67889999999999999998888665  57


Q ss_pred             HHHHHHHHHHhcc-CCCCEEE--EecCccchhhhhhccccCCccccccccCccCCCCCCCChhhHHhhhcc
Q 012352          179 ITDVARVFQITVH-SQVPIIG--LVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (465)
Q Consensus       179 ~~D~~~ll~~~~~-~~~p~i~--~~MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApGQ~~~~~l~~~~~~  246 (465)
                      |.++.++.+.+.. .+.|+-.  .+.-.++..+-+..-.-|....=+++.. .....||+++.++-..++.
T Consensus       177 P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAveaGa~~vd~ai~G-lG~~tGn~~le~vv~~L~~  246 (582)
T TIGR01108       177 PKAAYELVSALKKRFGLPVHLHSHATTGMAEMALLKAIEAGADGIDTAISS-MSGGTSHPPTETMVAALRG  246 (582)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCEEEecccc-ccccccChhHHHHHHHHHh
Confidence            8999999887654 3556543  4555556666666666777666566654 3457899999998877663

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain

Probab=96.07  E-value=1.4  Score=43.70  Aligned_cols=212  Identities=14%  Similarity=0.090  Sum_probs=130.9

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCC-------CCCCchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 012352           34 SVDKMVVDMGKANASGADLVEIRLDGL-------KNFNPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (465)
Q Consensus        34 t~~e~~~~~~~~~~~~~D~vElRlD~l-------~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~~l~  105 (465)
                      +.++.+.-+..+.+.|+|.+|.=--.-       ...++.+.++.+.+. .+.++..-+|..+.-|..+.+.+-..+.++
T Consensus        19 ~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~   98 (275)
T cd07937          19 RTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVE   98 (275)
T ss_pred             cHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHH
Confidence            344444445555677999999874321       122445566666543 356788778876666654445555667788


Q ss_pred             HHHHhCCcEEEEeecccc--chhHHHHhcCCCCcEEEEEecc-CCCCCCHHHHHHHHHHHHHcCCCEEEEEeec--CCHH
Q 012352          106 LAMELGADYIDVELQVAR--EFNDSIRGKKPEKCKVIVSSHN-YQYTPSVEDLSNLVARIQASGADIVKFATTA--LDIT  180 (465)
Q Consensus       106 ~~~~~~~~~iDiEl~~~~--~~~~~l~~~~~~~~~iI~S~H~-f~~tps~~el~~~~~~~~~~gadivKia~~~--~~~~  180 (465)
                      .+.+.|+++|-|-....+  ...+.+..++..+..+...... +....+.+.+.+..+++.+.|+|.+-++=+.  -+|+
T Consensus        99 ~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~  178 (275)
T cd07937          99 KAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPY  178 (275)
T ss_pred             HHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHH
Confidence            889999999888544322  1222233344456677665543 2223356789999999999999999888444  4689


Q ss_pred             HHHHHHHHhccC-CCCEEEEecCcc--chhhhhhccccCCccccccccCccCCCCCCCChhhHHhhhcc
Q 012352          181 DVARVFQITVHS-QVPIIGLVMGER--GLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (465)
Q Consensus       181 D~~~ll~~~~~~-~~p~i~~~MG~~--G~~sRi~~~~~Gs~~tf~~~~~~~~sApGQ~~~~~l~~~~~~  246 (465)
                      ++.++++.+.+. +.|+-..+=-..  +...=+..-..|..+.=+++.. ..--.|+.+++++...++.
T Consensus       179 ~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~G-lG~~aGN~~~E~l~~~L~~  246 (275)
T cd07937         179 AAYELVKALKKEVGLPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISP-LSGGTSQPSTESMVAALRG  246 (275)
T ss_pred             HHHHHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHhCCCEEEEeccc-ccCCcCChhHHHHHHHHHc
Confidence            999998886642 455555442222  3333333434565555455543 2234899999887766653

This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.07  E-value=0.015  Score=54.03  Aligned_cols=41  Identities=24%  Similarity=0.319  Sum_probs=34.3

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET  423 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~  423 (465)
                      +|.|+|+|-+|++++..++..|++|++++++++..+...+.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~   41 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKR   41 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhH
Confidence            58899999999999999999999999999999887665443

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=96.07  E-value=0.015  Score=55.84  Aligned_cols=71  Identities=34%  Similarity=0.347  Sum_probs=49.7

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEE-ECCHHHHHHHHHHHC---Ccc----cchh---cc-------cccCCCCe
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIA-NRTYDRARELAETVG---GHA----LSLA---DL-------ENFNPEDG  442 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~-~R~~~~a~~la~~~~---~~~----~~~~---~l-------~~~~~~~~  442 (465)
                      |+++|+|+ ||+|++++..|++.|++|+++ .|+.++++++.+++.   ...    .++.   ++       .+ ..+..
T Consensus         3 k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-~~~~i   81 (248)
T PRK06947          3 KVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQS-AFGRL   81 (248)
T ss_pred             cEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHH-hcCCC
Confidence            68999998 499999999999999987765 577777777665542   111    1221   11       11 23578


Q ss_pred             eEEEecCCCCC
Q 012352          443 MILANTTSIGM  453 (465)
Q Consensus       443 DilInaT~~gm  453 (465)
                      |+||++++...
T Consensus        82 d~li~~ag~~~   92 (248)
T PRK06947         82 DALVNNAGIVA   92 (248)
T ss_pred             CEEEECCccCC
Confidence            99999998753

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.07  E-value=0.026  Score=50.39  Aligned_cols=39  Identities=26%  Similarity=0.263  Sum_probs=34.8

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHH
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYD  415 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~  415 (465)
                      .+++||+++|+|-+ -.|+.++..|.+.|+.|++++++..
T Consensus        24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~   63 (140)
T cd05212          24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTI   63 (140)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCc
Confidence            67899999999998 7999999999999999999987543

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PLN03139 formate dehydrogenase; Provisional

Probab=96.06  E-value=0.0082  Score=62.46  Aligned_cols=39  Identities=26%  Similarity=0.301  Sum_probs=35.8

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHH
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYD  415 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~  415 (465)
                      ..+.+|++.|+|.|.+|+.++..|...|++|..++|+..
T Consensus       195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~  233 (386)
T PLN03139        195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKM  233 (386)
T ss_pred             cCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            468899999999999999999999999999999999753

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.05  E-value=0.02  Score=61.29  Aligned_cols=74  Identities=28%  Similarity=0.297  Sum_probs=49.4

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH-HHHHHHHHHH---CCcccchhcccccCCCCeeEEEecCCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY-DRARELAETV---GGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~-~~a~~la~~~---~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ..+.+++|+|+|+|++|.+++..|++.|++|+++++.. +....+.+.+   +.....-... . ....+|+||-++++.
T Consensus        12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~-~-~~~~~D~Vv~s~Gi~   89 (480)
T PRK01438         12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGP-T-LPEDTDLVVTSPGWR   89 (480)
T ss_pred             cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc-c-ccCCCCEEEECCCcC
Confidence            45678999999999999999999999999999998543 3444444433   2211100011 1 123589999887664

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=96.05  E-value=0.0048  Score=54.11  Aligned_cols=45  Identities=33%  Similarity=0.421  Sum_probs=36.0

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEE-EEECCHHHHHHHHHHHCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVV-IANRTYDRARELAETVGG  426 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~-i~~R~~~~a~~la~~~~~  426 (465)
                      -++-|||+|..|.+++.+|.+.|++|. +++|+.+.++.++..++.
T Consensus        11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~   56 (127)
T PF10727_consen   11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGA   56 (127)
T ss_dssp             -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccccc
Confidence            479999999999999999999999765 568999888888877754

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=96.04  E-value=0.016  Score=62.20  Aligned_cols=42  Identities=26%  Similarity=0.314  Sum_probs=39.1

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET  423 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~  423 (465)
                      .++-+||.|-||+.++..|.+.|++|+|+||++++++.+.+.
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~   48 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER   48 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHh
Confidence            368999999999999999999999999999999999998764

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=95.98  E-value=0.0092  Score=60.38  Aligned_cols=38  Identities=37%  Similarity=0.454  Sum_probs=35.0

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      ..+.||++.|+|.|.+|++++..++.+|++|..++|+.
T Consensus       141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~  178 (311)
T PRK08410        141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSG  178 (311)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCc
Confidence            35789999999999999999999999999999999964

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.98  E-value=0.019  Score=54.69  Aligned_cols=46  Identities=37%  Similarity=0.583  Sum_probs=40.7

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV  424 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~  424 (465)
                      +++|+++|+|+ |++|.+++..|.+.|++|+++.|+.++.+.+.+.+
T Consensus         3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~   49 (238)
T PRK05786          3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTL   49 (238)
T ss_pred             cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            46789999998 58999999999999999999999999888776554

>PRK07102 short chain dehydrogenase; Provisional

Probab=95.97  E-value=0.017  Score=55.32  Aligned_cols=71  Identities=28%  Similarity=0.323  Sum_probs=50.5

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC----Cc--c--cchhc---cccc---CCCCeeEEE
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG----GH--A--LSLAD---LENF---NPEDGMILA  446 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~----~~--~--~~~~~---l~~~---~~~~~DilI  446 (465)
                      |+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+.+.    ..  .  .++.+   +.+.   .....|++|
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~vv   81 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIVL   81 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEEE
Confidence            68999997 699999999999999999999999988877766542    11  1  12211   1110   122469999


Q ss_pred             ecCCCC
Q 012352          447 NTTSIG  452 (465)
Q Consensus       447 naT~~g  452 (465)
                      ++++..
T Consensus        82 ~~ag~~   87 (243)
T PRK07102         82 IAVGTL   87 (243)
T ss_pred             ECCcCC
Confidence            998753

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=95.97  E-value=0.0076  Score=61.29  Aligned_cols=120  Identities=21%  Similarity=0.253  Sum_probs=70.0

Q ss_pred             cHHHHHHHhhcCCCCeeEeccCchHHHhhhccccCHHHHhccceeeEEEec--cCCeEE-----EEeccH-----HHHHH
Q 012352          292 DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ--SDGKLF-----GYNTDY-----VGAIS  359 (465)
Q Consensus       292 ~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~~~~A~~~gavNtv~~~~--~~g~l~-----G~NTD~-----~G~~~  359 (465)
                      +..+..+.+++.++... ...|...+++..+..+--.+....-+|.|-...  ..| +.     |.|+..     .|++-
T Consensus        35 ~~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~Gvd~id~~~~~~~g-i~V~nap~~na~~vAE~~~~~~L  112 (324)
T COG0111          35 DEEELLEALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRG-ILVVNAPGGNAISVAELVLALLL  112 (324)
T ss_pred             chHHHHhhcccCcEEEE-ecCCCCHHHHhhCCCceEEEEccccccccCHHHHhhcC-CEEEeCCCcchHHHHHHHHHHHH
Confidence            33445566667776666 666777777776654444444333444442110  011 22     344442     23333


Q ss_pred             HHHhhhc------cCCCCCC--CcccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          360 AIEDGLR------GRLNVSG--GVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       360 ~l~~~~~------~~~~~~~--~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      ++.+.+.      +.+.|..  -.+..+.||++-|+|.|.+|+.++..+..+|.+|..+++.
T Consensus       113 ~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~  174 (324)
T COG0111         113 ALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPY  174 (324)
T ss_pred             HHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCC
Confidence            3222110      0011111  1245788999999999999999999999999999999993

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=95.96  E-value=0.02  Score=59.32  Aligned_cols=103  Identities=17%  Similarity=0.086  Sum_probs=62.1

Q ss_pred             EEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHH--HHHHHHHCCCeEEEEECCHH--------
Q 012352          347 LFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKA--LAYGAKAKGARVVIANRTYD--------  415 (465)
Q Consensus       347 l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~a--i~~~L~~~G~~v~i~~R~~~--------  415 (465)
                      .+-.|+--.|..+..++.+.-...   .....-.+|++||+|++ |+|.|  ++.+| ..|++++++.+..+        
T Consensus        10 ~i~~~~hp~gc~~~v~~qi~~~~~---~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~t   85 (398)
T PRK13656         10 FICTTAHPVGCEANVKEQIEYVKA---QGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGT   85 (398)
T ss_pred             eeECCCCCHHHHHHHHHHHHHHHh---cCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccc
Confidence            555667778877776554320000   00112346899999996 89998  89999 99998877774321        


Q ss_pred             -------HHHHHHHHHCCcc----cch----------hcccccCCCCeeEEEecCCCCCC
Q 012352          416 -------RARELAETVGGHA----LSL----------ADLENFNPEDGMILANTTSIGMQ  454 (465)
Q Consensus       416 -------~a~~la~~~~~~~----~~~----------~~l~~~~~~~~DilInaT~~gm~  454 (465)
                             ..++++++.+...    .+.          +.+.+ ..++.|+|||+.+.+..
T Consensus        86 agwy~~~a~~~~a~~~G~~a~~i~~DVss~E~v~~lie~I~e-~~G~IDiLVnSaA~~~r  144 (398)
T PRK13656         86 AGWYNSAAFDKFAKAAGLYAKSINGDAFSDEIKQKVIELIKQ-DLGQVDLVVYSLASPRR  144 (398)
T ss_pred             cccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH-hcCCCCEEEECCccCCC
Confidence                   1233444444321    122          11222 45789999999988743

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.96  E-value=0.024  Score=48.07  Aligned_cols=66  Identities=29%  Similarity=0.311  Sum_probs=48.5

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc-----cchhcccccCCCCeeEEEecCC
Q 012352          384 FVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA-----LSLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       384 vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~-----~~~~~l~~~~~~~~DilInaT~  450 (465)
                      ++|+|.|..|+.++..|.+.+.+|+++.+++++.+.+.++. ...     .+.+.+.+..+.+++.+|-+|+
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~   71 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-VEVIYGDATDPEVLERAGIEKADAVVILTD   71 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-SEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-cccccccchhhhHHhhcCccccCEEEEccC
Confidence            68999999999999999996669999999999988887654 221     1222233334567888888775

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK07577 short chain dehydrogenase; Provisional

Probab=95.95  E-value=0.0045  Score=58.83  Aligned_cols=37  Identities=27%  Similarity=0.329  Sum_probs=33.1

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHH
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDR  416 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~  416 (465)
                      .+|+++|+|+ |++|++++..|++.|++|+++.|+.++
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~   39 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAID   39 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            3688999998 599999999999999999999998764

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.93  E-value=0.027  Score=53.49  Aligned_cols=75  Identities=36%  Similarity=0.413  Sum_probs=48.5

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEEC-CHHHHHHHHHHHC---Cc--c--cchhc---cccc------CCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYDRARELAETVG---GH--A--LSLAD---LENF------NPE  440 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R-~~~~a~~la~~~~---~~--~--~~~~~---l~~~------~~~  440 (465)
                      +..|++||+|+ |++|++++..|.+.|++|++..| +.+..+.+.+.+.   ..  .  .++.+   +.+.      ...
T Consensus         4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~   83 (249)
T PRK12825          4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERFG   83 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHcC
Confidence            34689999998 69999999999999998776544 4545455544432   11  1  12211   1110      235


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      +.|++||+++...
T Consensus        84 ~id~vi~~ag~~~   96 (249)
T PRK12825         84 RIDILVNNAGIFE   96 (249)
T ss_pred             CCCEEEECCccCC
Confidence            6899999998543

>PRK06436 glycerate dehydrogenase; Provisional

Probab=95.93  E-value=0.01  Score=59.87  Aligned_cols=38  Identities=34%  Similarity=0.496  Sum_probs=35.0

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      ..+.+|++.|+|.|.+|++++..|+.+|++|+.++|+.
T Consensus       118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~  155 (303)
T PRK06436        118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSY  155 (303)
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            45789999999999999999999999999999999974

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.92  E-value=0.015  Score=57.68  Aligned_cols=45  Identities=24%  Similarity=0.404  Sum_probs=38.1

Q ss_pred             cEEEEEccchhHHHHHHHHHHCC----CeEEEEECCH-HHHHHHHHHHCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKG----ARVVIANRTY-DRARELAETVGG  426 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G----~~v~i~~R~~-~~a~~la~~~~~  426 (465)
                      .++.+||+|.+|.+++..|.+.|    .+|++++|+. ++++.+++.++.
T Consensus         4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~   53 (279)
T PRK07679          4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGV   53 (279)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCc
Confidence            47999999999999999999987    5899999976 467888776653

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=95.92  E-value=0.017  Score=62.23  Aligned_cols=40  Identities=20%  Similarity=0.181  Sum_probs=36.5

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELA  421 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la  421 (465)
                      ++|.|||+|-+|.+++..|+..|++|++++|++++.+.+.
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~   44 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIG   44 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Confidence            4799999999999999999999999999999999877653

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=95.91  E-value=0.016  Score=57.08  Aligned_cols=46  Identities=28%  Similarity=0.446  Sum_probs=41.8

Q ss_pred             cEEEEEccchhHHHHHHHHHHCC----CeEEEEECCHHHHHHHHHHHCCc
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKG----ARVVIANRTYDRARELAETVGGH  427 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G----~~v~i~~R~~~~a~~la~~~~~~  427 (465)
                      .++.++|+|.||.+++..|.+.|    .+|++++|+.++.+.++++++..
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~   51 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVV   51 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCc
Confidence            46899999999999999999999    38999999999999999999754

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=95.90  E-value=0.014  Score=58.34  Aligned_cols=70  Identities=20%  Similarity=0.206  Sum_probs=46.9

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH---C--Cc--cc--chhc---ccccCCCCeeEEEe
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV---G--GH--AL--SLAD---LENFNPEDGMILAN  447 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~---~--~~--~~--~~~~---l~~~~~~~~DilIn  447 (465)
                      +|++||+|+ |.+|+.++..|.+.|++|+++.|+..+........   +  ..  .+  ++.+   +.. .+.++|+||+
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-~~~~~d~Vih   82 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDS-VVDGCEGVFH   82 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHH-HHcCCCEEEE
Confidence            689999996 89999999999999999999888765433222111   1  01  11  2211   222 2456899999


Q ss_pred             cCCC
Q 012352          448 TTSI  451 (465)
Q Consensus       448 aT~~  451 (465)
                      +++.
T Consensus        83 ~A~~   86 (322)
T PLN02662         83 TASP   86 (322)
T ss_pred             eCCc
Confidence            9865

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.90  E-value=0.023  Score=56.66  Aligned_cols=67  Identities=16%  Similarity=0.186  Sum_probs=48.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc------c---chhcccccCCCCeeEEEecCCCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA------L---SLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~------~---~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ++.|+|+|.+|..++..|++.|.+|+++.|+.++.+.+.+. +...      .   ...+..+  ...+|+||-|++..
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~--~~~~d~vila~k~~   77 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNEN-GLRLEDGEITVPVLAADDPAE--LGPQDLVILAVKAY   77 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHc-CCcccCCceeecccCCCChhH--cCCCCEEEEecccc
Confidence            58999999999999999999999999999988877776542 2110      0   0111211  25688888888743

>PRK06487 glycerate dehydrogenase; Provisional

Probab=95.88  E-value=0.0091  Score=60.60  Aligned_cols=37  Identities=38%  Similarity=0.476  Sum_probs=34.4

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      ..+.+|++.|+|.|.+|++++..+..+|++|..++|.
T Consensus       144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~  180 (317)
T PRK06487        144 VELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLP  180 (317)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCC
Confidence            3578999999999999999999999999999999986

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=95.84  E-value=0.022  Score=57.83  Aligned_cols=69  Identities=32%  Similarity=0.456  Sum_probs=53.0

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-cccchhcccccCCCCeeEEEecCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-HALSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-~~~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      .-+.||.|+|.|-|-.||.++..+...|++|.|+.-++-+|-+.+  ..+ .+.++++.    ....|++|.||+-
T Consensus       205 ~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~--MdGf~V~~m~~A----a~~gDifiT~TGn  274 (420)
T COG0499         205 VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAA--MDGFRVMTMEEA----AKTGDIFVTATGN  274 (420)
T ss_pred             eeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHh--hcCcEEEEhHHh----hhcCCEEEEccCC
Confidence            457899999999999999999999999999999999988775543  222 33344333    3356888888874

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=95.84  E-value=0.17  Score=47.30  Aligned_cols=118  Identities=21%  Similarity=0.273  Sum_probs=68.7

Q ss_pred             EEEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 012352           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (465)
Q Consensus        26 icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~~l~  105 (465)
                      ++..+...+.+++...++.+...|++++|+|...-.   ..+.++.+.+..+. +.+.      +|..  ...++   +.
T Consensus         6 ~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~---~~~~i~~l~~~~~~-~~iG------ag~v--~~~~~---~~   70 (190)
T cd00452           6 LVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPG---ALEAIRALRKEFPE-ALIG------AGTV--LTPEQ---AD   70 (190)
T ss_pred             EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChh---HHHHHHHHHHHCCC-CEEE------EEeC--CCHHH---HH
Confidence            445588999999999999999999999999976322   23355555554431 2222      1221  21222   34


Q ss_pred             HHHHhCCcEEEEeeccccchhHHHHhcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 012352          106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (465)
Q Consensus       106 ~~~~~~~~~iDiEl~~~~~~~~~l~~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKi  172 (465)
                      .++..|++++=.- ....++.+.   .+..+.++|.-..      +.+|    ..++.+.|||++|+
T Consensus        71 ~a~~~Ga~~i~~p-~~~~~~~~~---~~~~~~~~i~gv~------t~~e----~~~A~~~Gad~i~~  123 (190)
T cd00452          71 AAIAAGAQFIVSP-GLDPEVVKA---ANRAGIPLLPGVA------TPTE----IMQALELGADIVKL  123 (190)
T ss_pred             HHHHcCCCEEEcC-CCCHHHHHH---HHHcCCcEECCcC------CHHH----HHHHHHCCCCEEEE
Confidence            5667788887321 112222222   2234566666433      2233    44455789999998

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=95.83  E-value=0.0094  Score=57.33  Aligned_cols=63  Identities=27%  Similarity=0.421  Sum_probs=45.9

Q ss_pred             chhHHHHHHHHHHCCCeEEEEECCHHH----HHHHHHHHCCccc--ch---hcc-------cccCC-CCeeEEEecCCCC
Q 012352          390 GGAGKALAYGAKAKGARVVIANRTYDR----ARELAETVGGHAL--SL---ADL-------ENFNP-EDGMILANTTSIG  452 (465)
Q Consensus       390 Gg~g~ai~~~L~~~G~~v~i~~R~~~~----a~~la~~~~~~~~--~~---~~l-------~~~~~-~~~DilInaT~~g  452 (465)
                      +|+|++++.+|++.|++|++.+|+.++    .+++.++++...+  ++   +++       .+ .. +..|++||+++..
T Consensus         6 ~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~-~~~g~iD~lV~~a~~~   84 (241)
T PF13561_consen    6 SGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVE-RFGGRIDILVNNAGIS   84 (241)
T ss_dssp             SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHH-HHCSSESEEEEEEESC
T ss_pred             CChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHh-hcCCCeEEEEeccccc
Confidence            599999999999999999999999998    4455555554322  22   111       12 34 7899999998765


Q ss_pred             C
Q 012352          453 M  453 (465)
Q Consensus       453 m  453 (465)
                      .
T Consensus        85 ~   85 (241)
T PF13561_consen   85 P   85 (241)
T ss_dssp             T
T ss_pred             c
Confidence            4

...

>PRK06123 short chain dehydrogenase; Provisional

Probab=95.82  E-value=0.023  Score=54.49  Aligned_cols=72  Identities=28%  Similarity=0.358  Sum_probs=48.7

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEE-CCHHHHHHHHHHHC---Ccc----cchhc---cccc------CCCCe
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIAN-RTYDRARELAETVG---GHA----LSLAD---LENF------NPEDG  442 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~-R~~~~a~~la~~~~---~~~----~~~~~---l~~~------~~~~~  442 (465)
                      +|.+||+|+ |++|++++..|++.|++|++.. |++++.+++.+.+.   ...    .++.+   +.+.      ..+..
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   81 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGRL   81 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence            468999998 5899999999999999877775 56666666655442   211    12211   1110      23578


Q ss_pred             eEEEecCCCC
Q 012352          443 MILANTTSIG  452 (465)
Q Consensus       443 DilInaT~~g  452 (465)
                      |+|||+++..
T Consensus        82 d~li~~ag~~   91 (248)
T PRK06123         82 DALVNNAGIL   91 (248)
T ss_pred             CEEEECCCCC
Confidence            9999999764

>PLN02650 dihydroflavonol-4-reductase

Probab=95.80  E-value=0.015  Score=59.41  Aligned_cols=71  Identities=17%  Similarity=0.162  Sum_probs=49.8

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC--C---c--c--cchhc---ccccCCCCeeEEE
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG--G---H--A--LSLAD---LENFNPEDGMILA  446 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~--~---~--~--~~~~~---l~~~~~~~~DilI  446 (465)
                      ++|++||+|+ |.+|+.++..|.+.|.+|+++.|+.++...+.....  .   .  .  .++.+   +.+ .+.++|.||
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~-~~~~~d~Vi   82 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDD-AIRGCTGVF   82 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHH-HHhCCCEEE
Confidence            4679999998 789999999999999999999998766655543321  1   1  1  12221   222 345689999


Q ss_pred             ecCCC
Q 012352          447 NTTSI  451 (465)
Q Consensus       447 naT~~  451 (465)
                      ++++.
T Consensus        83 H~A~~   87 (351)
T PLN02650         83 HVATP   87 (351)
T ss_pred             EeCCC
Confidence            99864

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=95.79  E-value=0.024  Score=56.27  Aligned_cols=69  Identities=19%  Similarity=0.256  Sum_probs=53.4

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHC--CCeEE-EEECCHHHHHHHHHHHCC-cc-cchhcccccCCCCeeEEEecCCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAK--GARVV-IANRTYDRARELAETVGG-HA-LSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~--G~~v~-i~~R~~~~a~~la~~~~~-~~-~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      +..++-|+|.|.+|+..+..|...  ++++. +++|+++++++++++++. .. .+++++    +...|+||.|||..
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eel----l~~~D~Vvi~tp~~   78 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQL----ATHADIVVEAAPAS   78 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHH----hcCCCEEEECCCcH
Confidence            346899999999999999999863  66654 889999999999988863 22 244444    23579999999865

>PRK07680 late competence protein ComER; Validated

Probab=95.78  E-value=0.016  Score=57.34  Aligned_cols=42  Identities=31%  Similarity=0.381  Sum_probs=37.5

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC----eEEEEECCHHHHHHHHHHH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGA----RVVIANRTYDRARELAETV  424 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~----~v~i~~R~~~~a~~la~~~  424 (465)
                      ++.|+|+|.+|.+++..|.+.|.    +|++++|++++++.+++++
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~   47 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERY   47 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHc
Confidence            48899999999999999998883    7999999999998888765

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=95.77  E-value=0.017  Score=57.74  Aligned_cols=68  Identities=21%  Similarity=0.322  Sum_probs=44.6

Q ss_pred             EEEEccc-hhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHC----Cccc---------chhc---ccccCCC--Cee
Q 012352          384 FVVIGAG-GAGKALAYGAKAKGA-RVVIANRTYDRARELAETVG----GHAL---------SLAD---LENFNPE--DGM  443 (465)
Q Consensus       384 vlV~GaG-g~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~----~~~~---------~~~~---l~~~~~~--~~D  443 (465)
                      |||+|+| -+|+.++..|.+.+. +|++++|++.+...+..++.    ...+         ++.+   +.. .+.  +.|
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~-~~~~~~pd   79 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNR-IFEEYKPD   79 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHH-HTT--T-S
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHH-HHhhcCCC
Confidence            6899996 599999999999997 89999999999999888872    1101         2211   222 223  789


Q ss_pred             EEEecCCCC
Q 012352          444 ILANTTSIG  452 (465)
Q Consensus       444 ilInaT~~g  452 (465)
                      +|++|+..=
T Consensus        80 iVfHaAA~K   88 (293)
T PF02719_consen   80 IVFHAAALK   88 (293)
T ss_dssp             EEEE-----
T ss_pred             EEEEChhcC
Confidence            999998764

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.74  E-value=0.012  Score=59.28  Aligned_cols=35  Identities=37%  Similarity=0.437  Sum_probs=32.2

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHH
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYD  415 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~  415 (465)
                      +.++.|+|+|.+|.+++..|.+.|.+|++++|+..
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~   38 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG   38 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            46899999999999999999999999999999753

>PRK08605 D-lactate dehydrogenase; Validated

Probab=95.74  E-value=0.011  Score=60.30  Aligned_cols=40  Identities=28%  Similarity=0.263  Sum_probs=34.9

Q ss_pred             cccCCcEEEEEccchhHHHHHHHH-HHCCCeEEEEECCHHH
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGA-KAKGARVVIANRTYDR  416 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L-~~~G~~v~i~~R~~~~  416 (465)
                      ..+.++++.|+|.|.+|++++..| ...|++|+.++|+..+
T Consensus       142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~  182 (332)
T PRK08605        142 RSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNA  182 (332)
T ss_pred             ceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccH
Confidence            468899999999999999999999 5578899999988654

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=95.74  E-value=0.02  Score=58.27  Aligned_cols=38  Identities=24%  Similarity=0.304  Sum_probs=34.2

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHH-HCCCeEEEEECCH
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAK-AKGARVVIANRTY  414 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~-~~G~~v~i~~R~~  414 (465)
                      ..+.||++.|+|.|.+|++++..+. .+|++|..++|..
T Consensus       141 ~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~  179 (323)
T PRK15409        141 TDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRH  179 (323)
T ss_pred             CCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCC
Confidence            4578999999999999999999997 8899999998864

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.73  E-value=0.016  Score=56.78  Aligned_cols=64  Identities=17%  Similarity=0.187  Sum_probs=47.3

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHC-Cccc-chhcccccCCCCeeEEEecCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGA---RVVIANRTYDRARELAETVG-GHAL-SLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~---~v~i~~R~~~~a~~la~~~~-~~~~-~~~~l~~~~~~~~DilInaT~  450 (465)
                      ++.|+|+|.+|++++..|.+.|.   .+.+++|+.++++++++.++ .... +..++    ..++|+||-|++
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~----~~~aDvVilav~   70 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAV----VDRSDVVFLAVR   70 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHH----HHhCCEEEEEeC
Confidence            58899999999999999998884   47899999999999988764 2221 22211    234677777766

>PLN00198 anthocyanidin reductase; Provisional

Probab=95.72  E-value=0.017  Score=58.60  Aligned_cols=73  Identities=19%  Similarity=0.141  Sum_probs=48.5

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHH--HHC----Ccc--cchhc---ccccCCCCeeEE
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAE--TVG----GHA--LSLAD---LENFNPEDGMIL  445 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~--~~~----~~~--~~~~~---l~~~~~~~~Dil  445 (465)
                      +.++++++|+|+ |.+|+.++..|.+.|++|+++.|+......+..  .+.    ...  .++.+   +.+ .+.++|+|
T Consensus         6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~~~~~d~v   84 (338)
T PLN00198          6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEA-PIAGCDLV   84 (338)
T ss_pred             CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHH-HHhcCCEE
Confidence            355789999996 689999999999999999888887644333221  111    111  12222   222 34578999


Q ss_pred             EecCCC
Q 012352          446 ANTTSI  451 (465)
Q Consensus       446 InaT~~  451 (465)
                      ||+++.
T Consensus        85 ih~A~~   90 (338)
T PLN00198         85 FHVATP   90 (338)
T ss_pred             EEeCCC
Confidence            999874

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=95.70  E-value=0.04  Score=50.27  Aligned_cols=55  Identities=33%  Similarity=0.371  Sum_probs=39.0

Q ss_pred             HHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHH
Q 012352          355 VGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRAREL  420 (465)
Q Consensus       355 ~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~l  420 (465)
                      .|++..|+..           +.+++||+|+|+|.+ -.|+-++..|.+.|+.|+++.......++.
T Consensus        21 ~aii~lL~~~-----------~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~   76 (160)
T PF02882_consen   21 LAIIELLEYY-----------GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEI   76 (160)
T ss_dssp             HHHHHHHHHT-----------T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHH
T ss_pred             HHHHHHHHhc-----------CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccce
Confidence            5666666652           257899999999998 599999999999999999998765444333

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=95.70  E-value=0.018  Score=59.74  Aligned_cols=38  Identities=18%  Similarity=0.394  Sum_probs=35.2

Q ss_pred             ccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       376 ~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      +..+.+|++.|+|.|.+|+.++..|..+|++|..+++.
T Consensus       111 g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~  148 (378)
T PRK15438        111 GFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPP  148 (378)
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCc
Confidence            36789999999999999999999999999999999874

>PLN02214 cinnamoyl-CoA reductase

Probab=95.69  E-value=0.021  Score=58.30  Aligned_cols=73  Identities=22%  Similarity=0.120  Sum_probs=49.0

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHH-HHHHC---Cc--c--cchhc---ccccCCCCeeEEE
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRAREL-AETVG---GH--A--LSLAD---LENFNPEDGMILA  446 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~l-a~~~~---~~--~--~~~~~---l~~~~~~~~DilI  446 (465)
                      +++++++|+|+ |.+|+.++..|.+.|++|+.+.|+.++.... ...+.   ..  .  .++.+   +.+ .+.++|+||
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~~~~~d~Vi   86 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKA-AIDGCDGVF   86 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHH-HHhcCCEEE
Confidence            56789999998 7999999999999999999999986643221 11221   11  1  12222   222 345689999


Q ss_pred             ecCCCC
Q 012352          447 NTTSIG  452 (465)
Q Consensus       447 naT~~g  452 (465)
                      ++++..
T Consensus        87 h~A~~~   92 (342)
T PLN02214         87 HTASPV   92 (342)
T ss_pred             EecCCC
Confidence            998653

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.69  E-value=0.03  Score=53.88  Aligned_cols=41  Identities=22%  Similarity=0.183  Sum_probs=35.7

Q ss_pred             CcccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          374 GVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       374 ~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      |.+..+++++|||+|+|.+|..=+..|.+.|++|+|++-+.
T Consensus        18 pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i   58 (223)
T PRK05562         18 FISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKF   58 (223)
T ss_pred             eeEEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            45667889999999999999888889999999999998764

>PRK06545 prephenate dehydrogenase; Validated

Probab=95.68  E-value=0.021  Score=58.87  Aligned_cols=69  Identities=23%  Similarity=0.347  Sum_probs=46.7

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccc--hhcccccCCCCeeEEEecCCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALS--LADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~--~~~l~~~~~~~~DilInaT~~g  452 (465)
                      +++.|+|.|-+|.+++.+|.+.|.++.+++++..+... ....+....+  ..++.+ ...++|+||-|+|..
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~-~~a~~~~~~~~~~~~~~~-~~~~aDlVilavP~~   71 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQL-ARALGFGVIDELAADLQR-AAAEADLIVLAVPVD   71 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHH-HHHhcCCCCcccccCHHH-HhcCCCEEEEeCCHH
Confidence            46899999999999999999999988889888765333 2222221111  112222 345678888888764

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=95.67  E-value=0.21  Score=48.20  Aligned_cols=156  Identities=17%  Similarity=0.110  Sum_probs=85.2

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 012352           34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGAD  113 (465)
Q Consensus        34 t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~~l~~~~~~~~~  113 (465)
                      +.++..+-++++.+.|+|.+=+..-+++..      .... ....|++..++...-=|.-..+.+......+.+++.|++
T Consensus        19 ~~~d~~~~~~~~~~~g~~av~v~~~~~~~~------~~~~-~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~Ga~   91 (235)
T cd00958          19 GLEDPEETVKLAAEGGADAVALTKGIARAY------GREY-AGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRLGAD   91 (235)
T ss_pred             cccCHHHHHHHHHhcCCCEEEeChHHHHhc------cccc-CCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHCCCC
Confidence            344444445555566888887653332211      0111 124577766663211111022335555567889999999


Q ss_pred             EEEEeeccccc-------hhHHHHh-cCCCCcEEEEEeccCCC----CCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHH
Q 012352          114 YIDVELQVARE-------FNDSIRG-KKPEKCKVIVSSHNYQY----TPSVEDLSNLVARIQASGADIVKFATTALDITD  181 (465)
Q Consensus       114 ~iDiEl~~~~~-------~~~~l~~-~~~~~~~iI~S~H~f~~----tps~~el~~~~~~~~~~gadivKia~~~~~~~D  181 (465)
                      .+|+.++....       ...++.. .+..+.++|+--|....    .-+.+++.+..+.+.+.|||++|+-. +.   |
T Consensus        92 ~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~-~~---~  167 (235)
T cd00958          92 AVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKY-TG---D  167 (235)
T ss_pred             EEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecC-CC---C
Confidence            99998865421       2223332 24568899996553110    01234555557778889999999942 23   3


Q ss_pred             HHHHHHHhccCCCCEEEEe
Q 012352          182 VARVFQITVHSQVPIIGLV  200 (465)
Q Consensus       182 ~~~ll~~~~~~~~p~i~~~  200 (465)
                      ...+-++.+..+.|+++++
T Consensus       168 ~~~~~~i~~~~~~pvv~~G  186 (235)
T cd00958         168 AESFKEVVEGCPVPVVIAG  186 (235)
T ss_pred             HHHHHHHHhcCCCCEEEeC
Confidence            3333444444567875553

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>PRK12330 oxaloacetate decarboxylase; Provisional

Probab=95.66  E-value=1.8  Score=46.67  Aligned_cols=231  Identities=15%  Similarity=0.114  Sum_probs=150.8

Q ss_pred             ccccccCCCCCCcE-EEEeeccCCHHHHHHHHHhhhhcCCCEEEEE----ecC---CCCCCchhHHHHHHhhC-CCcEEE
Q 012352           12 SKLVSGGMRKNPTL-ICVPIMGESVDKMVVDMGKANASGADLVEIR----LDG---LKNFNPRENIKTLIKES-PVPTLF   82 (465)
Q Consensus        12 ~~~~~~~~~~~~~~-icv~l~~~t~~e~~~~~~~~~~~~~D~vElR----lD~---l~~~~~~~~l~~l~~~~-~~PiI~   82 (465)
                      .+|..-++++.+-. +++.+   +.++++.-++.+-+.|.+.+|.=    .|-   |..-++.+.|+.+++.. +.|+-.
T Consensus         5 i~i~DTTLRDG~QSl~atr~---~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqm   81 (499)
T PRK12330          5 IGVTELALRDAHQSLMATRM---AMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQM   81 (499)
T ss_pred             cEEEECCccchhhcccCccC---CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEE
Confidence            45666677776655 33444   55566665666556799999996    562   22336677888887654 567777


Q ss_pred             EeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEeecccc--chhHHHHhcCCC--CcEEEEEeccCCCCCCHHHHHHH
Q 012352           83 TYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAR--EFNDSIRGKKPE--KCKVIVSSHNYQYTPSVEDLSNL  158 (465)
Q Consensus        83 T~R~~~eGG~~~~~~~~~~~~l~~~~~~~~~~iDiEl~~~~--~~~~~l~~~~~~--~~~iI~S~H~f~~tps~~el~~~  158 (465)
                      -+|..+==|..+..++-....++.+.+.|+|.+-|=....+  .....+...+..  ....-++|-.. .--+.+.+.+.
T Consensus        82 L~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~s-p~~t~e~~~~~  160 (499)
T PRK12330         82 LLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVS-PIHTVEGFVEQ  160 (499)
T ss_pred             EEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecC-CCCCHHHHHHH
Confidence            79977777776777777778899999999999887433221  111112222222  23234444211 11146679999


Q ss_pred             HHHHHHcCCCEEEEEeec--CCHHHHHHHHHHhccC---CCCEEEEe--cCccchhhhhhccccCCccccccccCccCCC
Q 012352          159 VARIQASGADIVKFATTA--LDITDVARVFQITVHS---QVPIIGLV--MGERGLISRILCAKFGGFLTFGTLENGIVSA  231 (465)
Q Consensus       159 ~~~~~~~gadivKia~~~--~~~~D~~~ll~~~~~~---~~p~i~~~--MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sA  231 (465)
                      .+++.+.|||.+=|+=|+  -+|.++.++...+...   +.|+-..+  .-.++..+=+..-.-|....=+++.. .+-+
T Consensus       161 a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDtai~G-lg~~  239 (499)
T PRK12330        161 AKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAISS-MSLG  239 (499)
T ss_pred             HHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEeeccc-cccc
Confidence            999999999999888666  5789999999887643   46766544  33344555555666676666566664 3567


Q ss_pred             CCCCChhhHHhhhccc
Q 012352          232 PGQPTIKDLLDLYNFR  247 (465)
Q Consensus       232 pGQ~~~~~l~~~~~~~  247 (465)
                      +||++.+++-..++-.
T Consensus       240 aGn~atE~vv~~L~~~  255 (499)
T PRK12330        240 PGHNPTESLVEMLEGT  255 (499)
T ss_pred             ccchhHHHHHHHHHhc
Confidence            8999999988877743

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=95.65  E-value=0.023  Score=56.55  Aligned_cols=72  Identities=19%  Similarity=0.136  Sum_probs=50.4

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHCCcccchhcc-cccCCCCeeEEEecCCCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAE-TVGGHALSLADL-ENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~-~~~~~~~~~~~l-~~~~~~~~DilInaT~~gm  453 (465)
                      .++|+|+|.|.+|++++..|.+.|..+.|++++...+..... +++.......+. .. ...++|+||-|+|+..
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~-~~~~aD~VivavPi~~   76 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAE-AAAEADLVIVAVPIEA   76 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhh-hcccCCEEEEeccHHH
Confidence            368999999999999999999999999888888766544433 343211000111 12 3456899999999863

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=95.64  E-value=0.057  Score=51.47  Aligned_cols=70  Identities=30%  Similarity=0.365  Sum_probs=47.6

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHH-HHHHHHHHHC---Cc--c--cchhc---c-------cccCCCCe
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYD-RARELAETVG---GH--A--LSLAD---L-------ENFNPEDG  442 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~-~a~~la~~~~---~~--~--~~~~~---l-------~~~~~~~~  442 (465)
                      |+++|+|+ |++|++++..|.+.|++|++..|+.. .++++...+.   ..  .  .++.+   +       .+ ..+..
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~-~~~~i   81 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEE-EEGPV   81 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHH-HcCCC
Confidence            68999987 59999999999999999999999843 3444444332   11  1  12211   1       11 24568


Q ss_pred             eEEEecCCCC
Q 012352          443 MILANTTSIG  452 (465)
Q Consensus       443 DilInaT~~g  452 (465)
                      |++||+++..
T Consensus        82 d~vi~~ag~~   91 (245)
T PRK12824         82 DILVNNAGIT   91 (245)
T ss_pred             CEEEECCCCC
Confidence            9999999865

>PLN02686 cinnamoyl-CoA reductase

Probab=95.61  E-value=0.024  Score=58.54  Aligned_cols=45  Identities=24%  Similarity=0.230  Sum_probs=38.6

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHH
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELA  421 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la  421 (465)
                      ...++|+|||+|+ |.+|++++..|.+.|++|+++.|+.++.+.+.
T Consensus        49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l~   94 (367)
T PLN02686         49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLR   94 (367)
T ss_pred             cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            3467899999998 79999999999999999999899887766653

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.61  E-value=0.034  Score=58.79  Aligned_cols=69  Identities=23%  Similarity=0.339  Sum_probs=52.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCccc-----chhcccccCCCCeeEEEecCCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL-----SLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~-----~~~~l~~~~~~~~DilInaT~~  451 (465)
                      +++|+|+|.+|+.++..|.+.|.+|++++|++++.+.+.+..+...+     +...+.+..+.++|.+|.+++-
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~   75 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS   75 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence            68999999999999999999999999999999998888764432221     1122333235678888888764

>PLN02256 arogenate dehydrogenase

Probab=95.59  E-value=0.03  Score=56.45  Aligned_cols=69  Identities=23%  Similarity=0.256  Sum_probs=47.8

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ++.++.|+|.|.+|.+++..|.+.|.+|++++|+..  .+.+..++...  +.+..+....++|+||-|+|..
T Consensus        35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~--~~~a~~~gv~~--~~~~~e~~~~~aDvVilavp~~  103 (304)
T PLN02256         35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY--SDIAAELGVSF--FRDPDDFCEEHPDVVLLCTSIL  103 (304)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH--HHHHHHcCCee--eCCHHHHhhCCCCEEEEecCHH
Confidence            467899999999999999999999999999999864  34455554321  2222221112468888888754

>PLN02688 pyrroline-5-carboxylate reductase

Probab=95.56  E-value=0.022  Score=55.86  Aligned_cols=40  Identities=30%  Similarity=0.372  Sum_probs=35.4

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC----eEEEE-ECCHHHHHHHHH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGA----RVVIA-NRTYDRARELAE  422 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~----~v~i~-~R~~~~a~~la~  422 (465)
                      ++.++|.|.+|.+++..|.+.|+    +|+++ +|++++++.+.+
T Consensus         2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~   46 (266)
T PLN02688          2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS   46 (266)
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH
Confidence            47899999999999999999987    89999 999998877653

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=95.55  E-value=0.046  Score=54.31  Aligned_cols=44  Identities=27%  Similarity=0.431  Sum_probs=40.7

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET  423 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~  423 (465)
                      ..+++=.||-|-+|.+++..|...|++|+||||+.++.+.+.+.
T Consensus        34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~   77 (327)
T KOG0409|consen   34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEA   77 (327)
T ss_pred             ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHh
Confidence            46789999999999999999999999999999999999988764

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=95.53  E-value=0.026  Score=48.03  Aligned_cols=68  Identities=24%  Similarity=0.229  Sum_probs=52.4

Q ss_pred             EEEEEccchhHHHHHHHHHHCC--Ce-EEEEECCHHHHHHHHHHHCCcc-cchhcccccCCCCeeEEEecCCCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKG--AR-VVIANRTYDRARELAETVGGHA-LSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G--~~-v~i~~R~~~~a~~la~~~~~~~-~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ++.|+|+|.+|+.-...+.+..  .+ +.++++++++++.++++++... .+++++-+  ..+.|+++-+||..
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~D~V~I~tp~~   73 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLA--DEDVDAVIIATPPS   73 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHH--HTTESEEEEESSGG
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHH--hhcCCEEEEecCCc
Confidence            5899999999999988888773  45 4589999999999999887653 24444432  13689999999875

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=95.50  E-value=0.033  Score=59.50  Aligned_cols=40  Identities=30%  Similarity=0.374  Sum_probs=37.7

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Q 012352          384 FVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET  423 (465)
Q Consensus       384 vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~  423 (465)
                      +-|+|.|-||.+++..|++.|++|+++||++++.+++.+.
T Consensus         2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~   41 (467)
T TIGR00873         2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAE   41 (467)
T ss_pred             EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhh
Confidence            6789999999999999999999999999999999998876

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.49  E-value=0.085  Score=50.61  Aligned_cols=93  Identities=17%  Similarity=0.175  Sum_probs=58.1

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCH----------HHHHHHHH
Q 012352          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY----------DRARELAE  422 (465)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~----------~~a~~la~  422 (465)
                      +.|...+++..+...       +.++++++++|.|.|..|+.++..|.+.|+ .|.|.+.+.          +..+...+
T Consensus         3 g~Gv~~~~~~~~~~~-------~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~   75 (217)
T cd05211           3 GYGVVVAMKAAMKHL-------GDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVA   75 (217)
T ss_pred             hhHHHHHHHHHHHHc-------CCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHh
Confidence            466666665544321       256889999999999999999999999998 677777766          44433332


Q ss_pred             HHCCcccch-hcc--cccCCCCeeEEEecCCCCC
Q 012352          423 TVGGHALSL-ADL--ENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       423 ~~~~~~~~~-~~l--~~~~~~~~DilInaT~~gm  453 (465)
                      ..+....+- +.+  .++...++|++|=|+.-+.
T Consensus        76 ~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~~~~  109 (217)
T cd05211          76 LGGSARVKVQDYFPGEAILGLDVDIFAPCALGNV  109 (217)
T ss_pred             hCCccccCcccccCcccceeccccEEeeccccCc
Confidence            221111110 111  1111136899999887553

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.47  E-value=0.028  Score=61.04  Aligned_cols=70  Identities=26%  Similarity=0.296  Sum_probs=48.0

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ..+.+|++.|+|.|.+|+.++..|..+|++|+.++|+....  .+..++....+   +.+ .+.++|+|+.+.|..
T Consensus       136 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~--~~~~~g~~~~~---l~e-ll~~aDiV~l~lP~t  205 (526)
T PRK13581        136 VELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPE--RAAQLGVELVS---LDE-LLARADFITLHTPLT  205 (526)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChh--HHHhcCCEEEc---HHH-HHhhCCEEEEccCCC
Confidence            45789999999999999999999999999999999854321  11222322222   222 234567777776654

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=95.46  E-value=0.43  Score=47.71  Aligned_cols=84  Identities=26%  Similarity=0.370  Sum_probs=57.9

Q ss_pred             EEEEeeccCCHHHHHHHHHhhhhcCCCEEEEEec----------CCCCCCc-hhHHHHHHhhCCCcEEEEeccCCCCCCC
Q 012352           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLD----------GLKNFNP-RENIKTLIKESPVPTLFTYRPIWEGGQY   93 (465)
Q Consensus        25 ~icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD----------~l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~   93 (465)
                      .+.+.|.+.+.++...-++.+...|+|.||+=+-          +..+.+. .+.++.+++..+.|+.+-++..      
T Consensus        91 p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~------  164 (296)
T cd04740          91 PVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPN------  164 (296)
T ss_pred             cEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCC------
Confidence            3668999999999999888887889999999543          2221110 1234445444588998887631      


Q ss_pred             CCCHHHHHHHHHHHHHhCCcEEEE
Q 012352           94 DGDENERVDVLRLAMELGADYIDV  117 (465)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~iDi  117 (465)
                         .++-.++.+.+.+.|+|+|++
T Consensus       165 ---~~~~~~~a~~~~~~G~d~i~~  185 (296)
T cd04740         165 ---VTDIVEIARAAEEAGADGLTL  185 (296)
T ss_pred             ---chhHHHHHHHHHHcCCCEEEE
Confidence               224556777788889999887

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PRK06932 glycerate dehydrogenase; Provisional

Probab=95.46  E-value=0.023  Score=57.60  Aligned_cols=38  Identities=26%  Similarity=0.357  Sum_probs=34.6

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      ..+.||++.|+|.|.+|++++..++.+|++|+.++|..
T Consensus       143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~  180 (314)
T PRK06932        143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKG  180 (314)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCc
Confidence            35789999999999999999999999999999998863

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.45  E-value=0.035  Score=55.71  Aligned_cols=73  Identities=29%  Similarity=0.363  Sum_probs=54.6

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCcccc-------hhcc----ccc-CCCCeeEEE
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGHALS-------LADL----ENF-NPEDGMILA  446 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~~~~-------~~~l----~~~-~~~~~DilI  446 (465)
                      .+.+|||+|||.+|..+...++..|+ +|++++-.+.|. ++|+++|...+.       .+++    ... .-..+|+.|
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rl-e~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~  247 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRL-ELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTF  247 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHH-HHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEE
Confidence            46799999999999999999999999 999999988874 566779865321       1121    110 113489999


Q ss_pred             ecCCCCC
Q 012352          447 NTTSIGM  453 (465)
Q Consensus       447 naT~~gm  453 (465)
                      +|+++.+
T Consensus       248 dCsG~~~  254 (354)
T KOG0024|consen  248 DCSGAEV  254 (354)
T ss_pred             EccCchH
Confidence            9998764

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=95.44  E-value=0.023  Score=59.00  Aligned_cols=38  Identities=26%  Similarity=0.406  Sum_probs=35.1

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      ..+.+|++.|+|.|.+|+.++..|..+|++|.++++..
T Consensus       112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~  149 (381)
T PRK00257        112 VDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPR  149 (381)
T ss_pred             CCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcc
Confidence            57889999999999999999999999999999998753

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=95.44  E-value=0.023  Score=57.74  Aligned_cols=46  Identities=30%  Similarity=0.348  Sum_probs=38.7

Q ss_pred             ccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHH
Q 012352          376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELA  421 (465)
Q Consensus       376 ~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la  421 (465)
                      +..+.+|+|.|+|.|.+|+++++.|..+|+.+.-.+|+..+.+...
T Consensus       157 g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~  202 (336)
T KOG0069|consen  157 GYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAY  202 (336)
T ss_pred             cccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHH
Confidence            4567899999999999999999999999977888888776655443

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.44  E-value=0.054  Score=57.24  Aligned_cols=73  Identities=25%  Similarity=0.231  Sum_probs=55.8

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-cc-----cchhcccccCCCCeeEEEecCCC
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-HA-----LSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-~~-----~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      ...++++|+|.|..|+.++..|.+.|.+|+++++++++.+.+.+++.. ..     .+.+.+.+..+.++|.+|.+++-
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~  307 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTND  307 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence            456899999999999999999999999999999999998888776522 11     12222333346678999888763

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=95.44  E-value=0.041  Score=55.99  Aligned_cols=74  Identities=18%  Similarity=0.268  Sum_probs=51.7

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHC------C-c-ccc-hhcccccCCCCeeEEEecC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVG------G-H-ALS-LADLENFNPEDGMILANTT  449 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~------~-~-~~~-~~~l~~~~~~~~DilInaT  449 (465)
                      +.+++.|+|+|.+|.++++.++..|. +|+++++++++++.-+-++.      . . .+. ..+. + .+.++|+||+++
T Consensus         5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~-~l~~aDiVI~ta   82 (321)
T PTZ00082          5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-E-DIAGSDVVIVTA   82 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-H-HhCCCCEEEECC
Confidence            45789999999999999999999996 99999999886543221111      0 1 011 1222 2 357899999999


Q ss_pred             CCCCCC
Q 012352          450 SIGMQP  455 (465)
Q Consensus       450 ~~gm~~  455 (465)
                      +.+-.+
T Consensus        83 g~~~~~   88 (321)
T PTZ00082         83 GLTKRP   88 (321)
T ss_pred             CCCCCC
Confidence            886544

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=95.43  E-value=0.034  Score=54.93  Aligned_cols=67  Identities=18%  Similarity=0.296  Sum_probs=50.5

Q ss_pred             EEEEEccchhHHHHHHHHHHCC--Ce-EEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKG--AR-VVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G--~~-v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ++.|+|.|.+|+.++..+.+.+  ++ +.+++|+.++++.+++.++...  +.++++ .+.++|+||.|||..
T Consensus         3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~--~~~~~e-ll~~~DvVvi~a~~~   72 (265)
T PRK13304          3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKA--CLSIDE-LVEDVDLVVECASVN   72 (265)
T ss_pred             EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCee--ECCHHH-HhcCCCEEEEcCChH
Confidence            6899999999999999998764  54 7789999999999988765432  223333 125689999998754

>CHL00194 ycf39 Ycf39; Provisional

Probab=95.42  E-value=0.024  Score=57.05  Aligned_cols=67  Identities=24%  Similarity=0.310  Sum_probs=48.1

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCccc--chh---cccccCCCCeeEEEecCCC
Q 012352          383 LFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL--SLA---DLENFNPEDGMILANTTSI  451 (465)
Q Consensus       383 ~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~--~~~---~l~~~~~~~~DilInaT~~  451 (465)
                      +++|+|+ |-+|+.++.+|.+.|++|+++.|+.+++..+.. .+...+  ++.   .+.+ .+.++|.||++++.
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~-~~v~~v~~Dl~d~~~l~~-al~g~d~Vi~~~~~   74 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKE-WGAELVYGDLSLPETLPP-SFKGVTAIIDASTS   74 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhh-cCCEEEECCCCCHHHHHH-HHCCCCEEEECCCC
Confidence            6899997 789999999999999999999999876654432 222221  222   2333 45678999998753

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=95.40  E-value=0.0094  Score=60.47  Aligned_cols=38  Identities=24%  Similarity=0.162  Sum_probs=33.4

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHH
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYD  415 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~  415 (465)
                      ++++|+|||+|+ |++|++++..|.+.|++|+++.|+..
T Consensus         3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~   41 (340)
T PLN02653          3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSS   41 (340)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccc
Confidence            456899999997 78999999999999999999988653

>PLN02306 hydroxypyruvate reductase

Probab=95.35  E-value=0.027  Score=58.74  Aligned_cols=39  Identities=26%  Similarity=0.228  Sum_probs=34.8

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHH-HCCCeEEEEECCHH
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAK-AKGARVVIANRTYD  415 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~-~~G~~v~i~~R~~~  415 (465)
                      ..+.+|++.|+|.|.+|++++..|. .+|++|..++|+..
T Consensus       161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~  200 (386)
T PLN02306        161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQS  200 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCc
Confidence            4578999999999999999999985 88999999998753

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=95.33  E-value=0.95  Score=42.29  Aligned_cols=130  Identities=17%  Similarity=0.131  Sum_probs=78.9

Q ss_pred             cEEEEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHHHH
Q 012352           24 TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENERVD  102 (465)
Q Consensus        24 ~~icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~  102 (465)
                      +.||+.|-..+.++..+-++.+... +|++|+-..+..... .+.++.+++. .+.|++...-.. +.+       .  .
T Consensus         1 ~~~~~a~d~~~~~~~~~~~~~l~~~-i~~ieig~~~~~~~g-~~~i~~i~~~~~~~~i~~~~~v~-~~~-------~--~   68 (202)
T cd04726           1 PLLQVALDLLDLEEALELAKKVPDG-VDIIEAGTPLIKSEG-MEAVRALREAFPDKIIVADLKTA-DAG-------A--L   68 (202)
T ss_pred             CceEEEEcCCCHHHHHHHHHHhhhc-CCEEEcCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEEec-ccc-------H--H
Confidence            5789999999999999988887665 999999666554322 2467777665 478887754322 111       1  2


Q ss_pred             HHHHHHHhCCcEEEEeeccccchhHHHH-hcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 012352          103 VLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (465)
Q Consensus       103 ~l~~~~~~~~~~iDiEl~~~~~~~~~l~-~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKi  172 (465)
                      .++.+.+.|++++=+-.....+..+++. ..+..+.++++..+... |  ..+..   + +...|+|++|+
T Consensus        69 ~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~-t--~~e~~---~-~~~~~~d~v~~  132 (202)
T cd04726          69 EAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVE-D--PEKRA---K-LLKLGVDIVIL  132 (202)
T ss_pred             HHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCC-C--HHHHH---H-HHHCCCCEEEE
Confidence            3466778899988764433221112222 22335777776544321 2  22332   2 55568898888

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=95.30  E-value=0.045  Score=56.25  Aligned_cols=71  Identities=23%  Similarity=0.297  Sum_probs=52.2

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc-cch---hcccccCCCCeeEEEecCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA-LSL---ADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~-~~~---~~l~~~~~~~~DilInaT~~  451 (465)
                      .+++|+|.|+|++|.+++..++..|++|+++.++.++...++++++... ++.   +++.+ ..+.+|++|++++.
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~-~~~~~D~vid~~g~  257 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKA-AIGTMDYIIDTVSA  257 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHh-hcCCCCEEEECCCC
Confidence            4789999999999999999999999998888777776667777777532 221   12222 22358999999874

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.29  E-value=0.053  Score=54.75  Aligned_cols=71  Identities=18%  Similarity=0.283  Sum_probs=51.6

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCCc-cc------chhcccccCCCCeeEEEecCCCCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGH-AL------SLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~~-~~------~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      ++.|+|+|.+|.++++.|+..|.  +|++++|+.++++..+..+... ..      ...+. + .+.++|++|.|++...
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~-~l~~aDiViita~~~~   79 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-A-DCKGADVVVITAGANQ   79 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-H-HhCCCCEEEEccCCCC
Confidence            58999999999999999999994  8999999998887544444311 00      00111 2 3567999999999875


Q ss_pred             CC
Q 012352          454 QP  455 (465)
Q Consensus       454 ~~  455 (465)
                      .+
T Consensus        80 ~~   81 (308)
T cd05292          80 KP   81 (308)
T ss_pred             CC
Confidence            43

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd00945 Aldolase_Class_I Class I aldolases

Probab=95.29  E-value=1.9  Score=39.59  Aligned_cols=152  Identities=16%  Similarity=0.131  Sum_probs=91.5

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhC---CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHh
Q 012352           34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES---PVPTLFTYRPIWEGGQYDGDENERVDVLRLAMEL  110 (465)
Q Consensus        34 t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~---~~PiI~T~R~~~eGG~~~~~~~~~~~~l~~~~~~  110 (465)
                      +.+.+.+.++.+...|+|.+++--         +.++.+.+..   +.|+++.+-....  .  ...++-.+..+.+.+.
T Consensus        11 d~~~~~~~~~~~~~~gv~gi~~~g---------~~i~~~~~~~~~~~~~v~~~v~~~~~--~--~~~~~~~~~a~~a~~~   77 (201)
T cd00945          11 TLEDIAKLCDEAIEYGFAAVCVNP---------GYVRLAADALAGSDVPVIVVVGFPTG--L--TTTEVKVAEVEEAIDL   77 (201)
T ss_pred             CHHHHHHHHHHHHHhCCcEEEECH---------HHHHHHHHHhCCCCCeEEEEecCCCC--C--CcHHHHHHHHHHHHHc
Confidence            677777777777788999999875         2344443332   4788876543211  1  2246677888999999


Q ss_pred             CCcEEEEeeccc-------c---chhHHHHhcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecC---
Q 012352          111 GADYIDVELQVA-------R---EFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTAL---  177 (465)
Q Consensus       111 ~~~~iDiEl~~~-------~---~~~~~l~~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKia~~~~---  177 (465)
                      |+|.+.+-....       +   ++.+.+...-..+..+++- +....+.+.+++.+..+.+...|+|.+|......   
T Consensus        78 Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy-~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~  156 (201)
T cd00945          78 GADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVI-LETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGG  156 (201)
T ss_pred             CCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEE-EECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCC
Confidence            999999865432       1   2333443221135555553 3323333556777777777789999999876422   


Q ss_pred             -CHHHHHHHHHHhccCCCCEEEEe
Q 012352          178 -DITDVARVFQITVHSQVPIIGLV  200 (465)
Q Consensus       178 -~~~D~~~ll~~~~~~~~p~i~~~  200 (465)
                       +.+.+..+.+... .+.|+++.+
T Consensus       157 ~~~~~~~~i~~~~~-~~~~v~~~g  179 (201)
T cd00945         157 ATVEDVKLMKEAVG-GRVGVKAAG  179 (201)
T ss_pred             CCHHHHHHHHHhcc-cCCcEEEEC
Confidence             5666655554432 134555543

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>PRK06924 short chain dehydrogenase; Provisional

Probab=95.28  E-value=0.031  Score=53.77  Aligned_cols=43  Identities=30%  Similarity=0.463  Sum_probs=35.8

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCH-HHHHHHHHHH
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY-DRARELAETV  424 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~-~~a~~la~~~  424 (465)
                      |+++|+|+ ||+|++++..|++.|++|++++|+. ++.+++.+..
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~   46 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLAEQY   46 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHHhcc
Confidence            57999997 6999999999999999999999987 5555555444

>PRK07578 short chain dehydrogenase; Provisional

Probab=95.28  E-value=0.028  Score=52.26  Aligned_cols=62  Identities=19%  Similarity=0.196  Sum_probs=42.3

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccc---hhcccccCCCCeeEEEecCCCCC
Q 012352          383 LFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALS---LADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       383 ~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~---~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      +++|+|+ ||+|++++..|++. ++|++++|+.+.       +.....+   ++++-+ ..++.|+|||+++.+.
T Consensus         2 ~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~~-------~~~D~~~~~~~~~~~~-~~~~id~lv~~ag~~~   67 (199)
T PRK07578          2 KILVIGASGTIGRAVVAELSKR-HEVITAGRSSGD-------VQVDITDPASIRALFE-KVGKVDAVVSAAGKVH   67 (199)
T ss_pred             eEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCCc-------eEecCCChHHHHHHHH-hcCCCCEEEECCCCCC
Confidence            6899998 59999999999988 999999997541       1000001   111112 3457899999998653

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=95.28  E-value=0.047  Score=58.39  Aligned_cols=41  Identities=27%  Similarity=0.495  Sum_probs=38.3

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET  423 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~  423 (465)
                      ++.|+|.|-+|.+++..|++.|++|+++||++++.+++.+.
T Consensus         3 ~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~   43 (470)
T PTZ00142          3 DIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKK   43 (470)
T ss_pred             EEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh
Confidence            58899999999999999999999999999999999888764

>PRK08328 hypothetical protein; Provisional

Probab=95.28  E-value=0.017  Score=55.92  Aligned_cols=36  Identities=31%  Similarity=0.554  Sum_probs=32.5

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCH
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY  414 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~  414 (465)
                      +.+++|+|+|+||.|..++..|+..|+ ++++++.+.
T Consensus        25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            567899999999999999999999999 999998553

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=95.26  E-value=0.59  Score=45.01  Aligned_cols=138  Identities=18%  Similarity=0.201  Sum_probs=86.1

Q ss_pred             EEeec--cCCHHHHHHHHHhhhhcCCCEE--EEEecCCCCCCchhHHHHHH---hhCCCcEEEEeccCCCCCCCC--CCH
Q 012352           27 CVPIM--GESVDKMVVDMGKANASGADLV--EIRLDGLKNFNPRENIKTLI---KESPVPTLFTYRPIWEGGQYD--GDE   97 (465)
Q Consensus        27 cv~l~--~~t~~e~~~~~~~~~~~~~D~v--ElRlD~l~~~~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~--~~~   97 (465)
                      |+++.  ..+.+....+++++...|+|.+  .+|...+......+.++.++   +...+|+|+....  +|....  .+.
T Consensus        65 ~~~i~~p~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~--~g~~~~~~~~~  142 (235)
T cd00958          65 STSLSPKDDNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYP--RGPAVKNEKDP  142 (235)
T ss_pred             CCCCCCCCCCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEec--cCCcccCccCH
Confidence            44454  4677778888888889999988  77766443211122344443   3468999987654  233221  233


Q ss_pred             HHHHHHHHHHHHhCCcEEEEeeccccchhHHHHhcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEE
Q 012352           98 NERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIV  170 (465)
Q Consensus        98 ~~~~~~l~~~~~~~~~~iDiEl~~~~~~~~~l~~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadiv  170 (465)
                      ++..+..+.+.+.|+|||=+-.....+.++++...  -..+++++=..  ...+.++..+.++++.+.|++-+
T Consensus       143 ~~i~~~~~~a~~~GaD~Ik~~~~~~~~~~~~i~~~--~~~pvv~~GG~--~~~~~~~~l~~~~~~~~~Ga~gv  211 (235)
T cd00958         143 DLIAYAARIGAELGADIVKTKYTGDAESFKEVVEG--CPVPVVIAGGP--KKDSEEEFLKMVYDAMEAGAAGV  211 (235)
T ss_pred             HHHHHHHHHHHHHCCCEEEecCCCCHHHHHHHHhc--CCCCEEEeCCC--CCCCHHHHHHHHHHHHHcCCcEE
Confidence            33333466788899999999654434455555532  34567776321  23466778899999999999855

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=95.23  E-value=0.022  Score=56.84  Aligned_cols=37  Identities=24%  Similarity=0.270  Sum_probs=34.0

Q ss_pred             EEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Q 012352          386 VIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAE  422 (465)
Q Consensus       386 V~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~  422 (465)
                      ++|.|-+|.+++..|.+.|.+|++|+|++++.+.+.+
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~   37 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVA   37 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Confidence            5799999999999999999999999999999888764

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=95.21  E-value=0.063  Score=52.99  Aligned_cols=71  Identities=31%  Similarity=0.324  Sum_probs=51.0

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHCCcc-cchhc----cccc-CCCCeeEEEecCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANRTYDRARELAETVGGHA-LSLAD----LENF-NPEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~-v~i~~R~~~~a~~la~~~~~~~-~~~~~----l~~~-~~~~~DilInaT~~  451 (465)
                      .+++|+|+|+|++|..++..++..|++ |+++++++++. +++++++... ++..+    +.+. ....+|++|++++.
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~-~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~  197 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRR-ELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGA  197 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCC
Confidence            578999999999999999999999994 88888888775 5677777532 22211    1111 12358999999863

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK12331 oxaloacetate decarboxylase; Provisional

Probab=95.19  E-value=4.9  Score=42.84  Aligned_cols=231  Identities=13%  Similarity=0.155  Sum_probs=147.1

Q ss_pred             ccccccCCCCCCcEE-EEeeccCCHHHHHHHHHhhhhcCCCEEEEE----ecC---CCCCCchhHHHHHHhhC-CCcEEE
Q 012352           12 SKLVSGGMRKNPTLI-CVPIMGESVDKMVVDMGKANASGADLVEIR----LDG---LKNFNPRENIKTLIKES-PVPTLF   82 (465)
Q Consensus        12 ~~~~~~~~~~~~~~i-cv~l~~~t~~e~~~~~~~~~~~~~D~vElR----lD~---l~~~~~~~~l~~l~~~~-~~PiI~   82 (465)
                      .+|..-++++..-.. .+.+.-   ++.+.-++.+...|.+.+|.-    .|.   |-..++.+.++.+++.. +.++..
T Consensus         4 V~I~DtTlRDG~Qs~~~~~~~t---~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~   80 (448)
T PRK12331          4 IKITETVLRDGQQSLIATRMTT---EEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQM   80 (448)
T ss_pred             cEEEECCCCccccCcCCcccCH---HHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEE
Confidence            355566677666554 444444   444444445556699999994    442   22335666787776553 455555


Q ss_pred             EeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEeecccc--chhHHHHhcCCCCcEE--EEEeccCCCCCCHHHHHHH
Q 012352           83 TYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAR--EFNDSIRGKKPEKCKV--IVSSHNYQYTPSVEDLSNL  158 (465)
Q Consensus        83 T~R~~~eGG~~~~~~~~~~~~l~~~~~~~~~~iDiEl~~~~--~~~~~l~~~~~~~~~i--I~S~H~f~~tps~~el~~~  158 (465)
                      -+|..+--|..+..++-..+.++.+++.|++.|-|=....+  ...+.+..++..+..+  -+||-+ ..--+.+.+.+.
T Consensus        81 l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~-~p~~~~~~~~~~  159 (448)
T PRK12331         81 LLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTT-SPVHTIDYFVKL  159 (448)
T ss_pred             EeccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeec-CCCCCHHHHHHH
Confidence            58877777776667777778889999999999888654322  1112222233334443  345443 211256778999


Q ss_pred             HHHHHHcCCCEEEEEeec--CCHHHHHHHHHHhcc-CCCCEEEEe--cCccchhhhhhccccCCccccccccCccCCCCC
Q 012352          159 VARIQASGADIVKFATTA--LDITDVARVFQITVH-SQVPIIGLV--MGERGLISRILCAKFGGFLTFGTLENGIVSAPG  233 (465)
Q Consensus       159 ~~~~~~~gadivKia~~~--~~~~D~~~ll~~~~~-~~~p~i~~~--MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApG  233 (465)
                      .+++.+.|+|.+=|+=|.  -+|.++.++...+.. .+.|+-..+  .-.+|..+=+..-..|....=+++.. .+...|
T Consensus       160 a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~g-lg~gaG  238 (448)
T PRK12331        160 AKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISP-FAGGTS  238 (448)
T ss_pred             HHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcCCCEEEeeccc-cCCCcC
Confidence            999999999998888665  478999999888654 356665433  44455566666666676666566653 234478


Q ss_pred             CCChhhHHhhhccc
Q 012352          234 QPTIKDLLDLYNFR  247 (465)
Q Consensus       234 Q~~~~~l~~~~~~~  247 (465)
                      |++.+++-..++-.
T Consensus       239 N~~tE~lv~~L~~~  252 (448)
T PRK12331        239 QPATESMVAALQDL  252 (448)
T ss_pred             CHhHHHHHHHHHhc
Confidence            99999988777643

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.13  E-value=0.05  Score=54.36  Aligned_cols=39  Identities=26%  Similarity=0.281  Sum_probs=36.0

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRAREL  420 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~l  420 (465)
                      ++|.|+|+|-+|+.++..|+..|++|++++++++..+..
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~   44 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAG   44 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence            479999999999999999999999999999999987763

>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.12  E-value=0.04  Score=50.52  Aligned_cols=75  Identities=24%  Similarity=0.346  Sum_probs=57.9

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCccc----ch---hccc------ccCCCCeeE
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL----SL---ADLE------NFNPEDGMI  444 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~----~~---~~l~------~~~~~~~Di  444 (465)
                      .++-.++|+|. .|.|++.+..|+..|+.+.+.+--..+..+.+++++.+.+    ++   +++.      ....+..|.
T Consensus         7 ~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakelg~~~vf~padvtsekdv~aala~ak~kfgrld~   86 (260)
T KOG1199|consen    7 TKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKELGGKVVFTPADVTSEKDVRAALAKAKAKFGRLDA   86 (260)
T ss_pred             hcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHhCCceEEeccccCcHHHHHHHHHHHHhhccceee
Confidence            45667788854 6999999999999999999999988999999999987531    21   1211      114678999


Q ss_pred             EEecCCCCC
Q 012352          445 LANTTSIGM  453 (465)
Q Consensus       445 lInaT~~gm  453 (465)
                      +|||+++..
T Consensus        87 ~vncagia~   95 (260)
T KOG1199|consen   87 LVNCAGIAY   95 (260)
T ss_pred             eeeccceee
Confidence            999998764

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.10  E-value=0.044  Score=54.78  Aligned_cols=73  Identities=19%  Similarity=0.197  Sum_probs=55.5

Q ss_pred             cEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc--c----------cchhcccc------cCCCCe
Q 012352          382 KLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH--A----------LSLADLEN------FNPEDG  442 (465)
Q Consensus       382 k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~--~----------~~~~~l~~------~~~~~~  442 (465)
                      ++++|+|.. |+|++++..++.+|++|+++.|+.++..+++.+++..  .          .+++.++.      ......
T Consensus        34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~~  113 (331)
T KOG1210|consen   34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGPI  113 (331)
T ss_pred             ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCCc
Confidence            689999775 9999999999999999999999999999998887631  1          12222211      023568


Q ss_pred             eEEEecCCCCCC
Q 012352          443 MILANTTSIGMQ  454 (465)
Q Consensus       443 DilInaT~~gm~  454 (465)
                      |.+|||++....
T Consensus       114 d~l~~cAG~~v~  125 (331)
T KOG1210|consen  114 DNLFCCAGVAVP  125 (331)
T ss_pred             ceEEEecCcccc
Confidence            999999987643

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=95.09  E-value=0.074  Score=54.67  Aligned_cols=70  Identities=23%  Similarity=0.273  Sum_probs=49.7

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCcccch--h-c----cccc-CCCCeeEEEecCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGHALSL--A-D----LENF-NPEDGMILANTTSI  451 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~~~~~--~-~----l~~~-~~~~~DilInaT~~  451 (465)
                      .+|+|+|+|.+|..++..+...|+ +|++++++++|.+...+..+...+..  + +    ..+. ....+|++|.|++.
T Consensus       170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~  248 (350)
T COG1063         170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGS  248 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCC
Confidence            389999999999999988999998 89999999999655444355432211  1 1    1111 12369999999984

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=95.05  E-value=0.043  Score=59.60  Aligned_cols=71  Identities=30%  Similarity=0.343  Sum_probs=47.8

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ..+.+|++.|+|.|.+|++++..|..+|++|+.++|....  +.+.+++....  +++.+ .+.++|+|+.+.|..
T Consensus       134 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~--~~~~~~g~~~~--~~l~e-ll~~aDvV~l~lPlt  204 (525)
T TIGR01327       134 TELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP--ERAEQLGVELV--DDLDE-LLARADFITVHTPLT  204 (525)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh--hHHHhcCCEEc--CCHHH-HHhhCCEEEEccCCC
Confidence            4578999999999999999999999999999999985321  11223332211  12222 234567777766643

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=95.05  E-value=0.046  Score=54.98  Aligned_cols=69  Identities=25%  Similarity=0.347  Sum_probs=51.9

Q ss_pred             EEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCCcc-------cc-hhcccccCCCCeeEEEecCCCCC
Q 012352          384 FVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGHA-------LS-LADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       384 vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~~~-------~~-~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      +.|+|+|++|.++++.|+..|.  ++++++++.++++..+.++....       +. ..+ .+ .+.++|++|.+++..-
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~-~l~~aDiVIitag~p~   78 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YA-DAADADIVVITAGAPR   78 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HH-HhCCCCEEEEcCCCCC
Confidence            4699999999999999999994  79999999999888877664211       10 011 12 4567999999998754


Q ss_pred             C
Q 012352          454 Q  454 (465)
Q Consensus       454 ~  454 (465)
                      .
T Consensus        79 ~   79 (300)
T cd00300          79 K   79 (300)
T ss_pred             C
Confidence            3

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.04  E-value=0.046  Score=55.45  Aligned_cols=41  Identities=22%  Similarity=0.303  Sum_probs=37.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET  423 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~  423 (465)
                      ++.|+|+|.+|.+++..|++.|.+|++++|+++..+.+.+.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~   42 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTK   42 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc
Confidence            48899999999999999999999999999999888777653

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=95.02  E-value=0.061  Score=54.46  Aligned_cols=71  Identities=20%  Similarity=0.256  Sum_probs=52.2

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCCcc-------cch-hcccccCCCCeeEEEecCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGHA-------LSL-ADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~~~-------~~~-~~l~~~~~~~~DilInaT~~  451 (465)
                      .+|.|+|+|.+|.++++.|+..|.  ++.+++++.++++..+.++....       +.. .+. + .+.++|+||.+++.
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy-~-~~~~adivvitaG~   81 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDY-S-VTANSKVVIVTAGA   81 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCH-H-HhCCCCEEEECCCC
Confidence            489999999999999999998885  79999998888777666553210       110 111 2 35679999999887


Q ss_pred             CCC
Q 012352          452 GMQ  454 (465)
Q Consensus       452 gm~  454 (465)
                      .-.
T Consensus        82 ~~k   84 (312)
T cd05293          82 RQN   84 (312)
T ss_pred             CCC
Confidence            543

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=95.00  E-value=0.08  Score=53.92  Aligned_cols=67  Identities=12%  Similarity=0.089  Sum_probs=46.9

Q ss_pred             CCcEEEEEccchhHHHHHHHHHH-CCC-eEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~-~G~-~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~  450 (465)
                      .+.+|+|+|+|++|..++..++. .|. +|++++++++|.+.+ ++.+.. ...+++.+ . ..+|++|++++
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a-~~~~~~-~~~~~~~~-~-~g~d~viD~~G  231 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLF-SFADET-YLIDDIPE-D-LAVDHAFECVG  231 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHH-hhcCce-eehhhhhh-c-cCCcEEEECCC
Confidence            36799999999999998887775 565 899999998886554 333321 11222222 1 24899999998

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=94.99  E-value=0.56  Score=44.11  Aligned_cols=130  Identities=19%  Similarity=0.157  Sum_probs=83.4

Q ss_pred             EEEEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHH
Q 012352           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDV  103 (465)
Q Consensus        25 ~icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~~  103 (465)
                      ++||.+-..+.++.+.-++.+ ..+.|++|+-.-++.... .+.++.+++.. +.++++..... +-|       .+  .
T Consensus         1 ~l~~alD~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~-d~~-------~~--~   68 (206)
T TIGR03128         1 KLQLALDLLDIEEALELAEKV-ADYVDIIEIGTPLIKNEG-IEAVKEMKEAFPDRKVLADLKTM-DAG-------EY--E   68 (206)
T ss_pred             CeEEEecCCCHHHHHHHHHHc-ccCeeEEEeCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEeec-cch-------HH--H
Confidence            478999999999999988877 778999999644444332 24677776654 45677665432 111       11  3


Q ss_pred             HHHHHHhCCcEEEEeeccccchhHHHH-hcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 012352          104 LRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (465)
Q Consensus       104 l~~~~~~~~~~iDiEl~~~~~~~~~l~-~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKi  172 (465)
                      .+.+.+.|+|+|=+-.........++. ..+..+.++++..++..      +..+....+.++|+|++|+
T Consensus        69 ~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~------t~~~~~~~~~~~g~d~v~~  132 (206)
T TIGR03128        69 AEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVK------DKVKRAKELKELGADYIGV  132 (206)
T ss_pred             HHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCC------ChHHHHHHHHHcCCCEEEE
Confidence            566778899998765554322222222 22346889998766531      2344455567789999988

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=94.98  E-value=0.16  Score=47.63  Aligned_cols=118  Identities=21%  Similarity=0.215  Sum_probs=65.7

Q ss_pred             EEEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 012352           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (465)
Q Consensus        26 icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~~l~  105 (465)
                      ++..+...+.++....++.+...|+.++|+|..-...   .+.++.+++..  |.+ ..    .+|.. ... ++   ++
T Consensus        14 ~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~---~e~~~~~~~~~--~~~-~~----g~gtv-l~~-d~---~~   78 (187)
T PRK07455         14 AIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQP---AELISQLREKL--PEC-II----GTGTI-LTL-ED---LE   78 (187)
T ss_pred             EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCH---HHHHHHHHHhC--CCc-EE----eEEEE-EcH-HH---HH
Confidence            4445889999999999999999999999999765432   23344443322  321 01    11221 122 34   34


Q ss_pred             HHHHhCCcEEEEeeccccchhHHHHhcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 012352          106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (465)
Q Consensus       106 ~~~~~~~~~iDiEl~~~~~~~~~l~~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKi  172 (465)
                      .|++.|++++=+-- ...++.+ ....  .+...|.-.|    ||+  |    +.++.+.|+|++|+
T Consensus        79 ~A~~~gAdgv~~p~-~~~~~~~-~~~~--~~~~~i~G~~----t~~--e----~~~A~~~Gadyv~~  131 (187)
T PRK07455         79 EAIAAGAQFCFTPH-VDPELIE-AAVA--QDIPIIPGAL----TPT--E----IVTAWQAGASCVKV  131 (187)
T ss_pred             HHHHcCCCEEECCC-CCHHHHH-HHHH--cCCCEEcCcC----CHH--H----HHHHHHCCCCEEEE
Confidence            56778899872211 1111221 1111  1223333355    332  3    45555689999998

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=94.98  E-value=0.054  Score=52.51  Aligned_cols=43  Identities=28%  Similarity=0.518  Sum_probs=37.8

Q ss_pred             EEEEEccc-hhHHHHHHHHHH----CCCeEEEEECCHHHHHHHHHHHC
Q 012352          383 LFVVIGAG-GAGKALAYGAKA----KGARVVIANRTYDRARELAETVG  425 (465)
Q Consensus       383 ~vlV~GaG-g~g~ai~~~L~~----~G~~v~i~~R~~~~a~~la~~~~  425 (465)
                      .++|+|++ |+|++++..|++    .|++|++++|+.++++++++++.
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~   49 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIG   49 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHH
Confidence            58899985 999999999987    78999999999999988887763

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>PLN02712 arogenate dehydrogenase

Probab=94.96  E-value=0.07  Score=59.55  Aligned_cols=71  Identities=23%  Similarity=0.208  Sum_probs=48.3

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCccc-chhcccccCCCCeeEEEecCCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL-SLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~-~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ..+.++++.|||.|.+|++++.+|.+.|.+|++++|+...  +.+.+++.... +.+++.   ...+|+||-|+|..
T Consensus       365 ~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~--~~a~~~Gv~~~~~~~el~---~~~aDvVILavP~~  436 (667)
T PLN02712        365 NDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS--DEAQKLGVSYFSDADDLC---EEHPEVILLCTSIL  436 (667)
T ss_pred             CCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH--HHHHHcCCeEeCCHHHHH---hcCCCEEEECCChH
Confidence            4467789999999999999999999999999999998643  22334443211 122211   12357777777654

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.95  E-value=0.058  Score=57.45  Aligned_cols=72  Identities=18%  Similarity=0.198  Sum_probs=47.4

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHH-----HHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRA-----RELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a-----~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      +.+|+|+|+|.|+.|++++..|.+.|++|++++++....     ..+ +..+.....-....+ .+.++|+||.+.++.
T Consensus        12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l-~~~gi~~~~~~~~~~-~~~~~dlVV~Spgi~   88 (458)
T PRK01710         12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNEL-KELGVKLVLGENYLD-KLDGFDVIFKTPSMR   88 (458)
T ss_pred             hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHH-HhCCCEEEeCCCChH-HhccCCEEEECCCCC
Confidence            457899999999999999999999999999999764211     122 122222111111112 245689999986554

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=94.88  E-value=3.9  Score=39.73  Aligned_cols=200  Identities=15%  Similarity=0.147  Sum_probs=125.1

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCC----C-CCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHH
Q 012352           34 SVDKMVVDMGKANASGADLVEIRLDGLK----N-FNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLRLA  107 (465)
Q Consensus        34 t~~e~~~~~~~~~~~~~D~vElRlD~l~----~-~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~~l~~~  107 (465)
                      +.++.++-++.+.+.|+|.||+=.=--.    - .++.+.++.+.+.. +.++.+-.|..             .+.++.+
T Consensus        17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~-------------~~~i~~a   83 (265)
T cd03174          17 STEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNR-------------EKGIERA   83 (265)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCc-------------hhhHHHH
Confidence            5666677677777789999997432111    0 12334566665544 45665556641             3356677


Q ss_pred             HHhCCcEEEEeeccc----------------cchhHHHHhcCCCCcEEEEEe-ccCCCCCCHHHHHHHHHHHHHcCCCEE
Q 012352          108 MELGADYIDVELQVA----------------REFNDSIRGKKPEKCKVIVSS-HNYQYTPSVEDLSNLVARIQASGADIV  170 (465)
Q Consensus       108 ~~~~~~~iDiEl~~~----------------~~~~~~l~~~~~~~~~iI~S~-H~f~~tps~~el~~~~~~~~~~gadiv  170 (465)
                      .+.|++.|-+=+...                +...+.+...+..+..+.++. ..+.+.-+.+++.+.++++.++|+|.+
T Consensus        84 ~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i  163 (265)
T cd03174          84 LEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEI  163 (265)
T ss_pred             HhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEE
Confidence            788888888866544                112223333455688888888 445421256789999999999999998


Q ss_pred             EEEeec--CCHHHHHHHHHHhccC-C-CCEEEEecCcc--chhhhhhccccCCccccccccCccCCCCCCCChhhHHhhh
Q 012352          171 KFATTA--LDITDVARVFQITVHS-Q-VPIIGLVMGER--GLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLY  244 (465)
Q Consensus       171 Kia~~~--~~~~D~~~ll~~~~~~-~-~p~i~~~MG~~--G~~sRi~~~~~Gs~~tf~~~~~~~~sApGQ~~~~~l~~~~  244 (465)
                      -++=+.  -+|+++.++++.+... + .|+-..+=-..  |...=+..-..|..+.=+++.+ ..-..|+.+++++...+
T Consensus       164 ~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G-~G~~~Gn~~~e~~~~~l  242 (265)
T cd03174         164 SLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNG-LGERAGNAATEDLVAAL  242 (265)
T ss_pred             EechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEecccc-ccccccCccHHHHHHHH
Confidence            887433  5789999998886543 2 55555443333  3344444445565555556654 23568999999887766


Q ss_pred             ccc
Q 012352          245 NFR  247 (465)
Q Consensus       245 ~~~  247 (465)
                      +..
T Consensus       243 ~~~  245 (265)
T cd03174         243 EGL  245 (265)
T ss_pred             Hhc
Confidence            643

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=94.85  E-value=1.8  Score=40.95  Aligned_cols=145  Identities=17%  Similarity=0.126  Sum_probs=88.0

Q ss_pred             cCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 012352           32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG  111 (465)
Q Consensus        32 ~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~~l~~~~~~~  111 (465)
                      ..+.+++.+-++++.+.++|.+=+.--+++      ..+..+.. ....+-|.-....|.   .+.+.+..-.+.|++.|
T Consensus        13 ~~t~~~i~~~~~~a~~~~~~av~v~p~~v~------~~~~~l~~-~~~~v~~~~~fp~g~---~~~~~k~~eve~A~~~G   82 (203)
T cd00959          13 DATEEDIRKLCDEAKEYGFAAVCVNPCFVP------LAREALKG-SGVKVCTVIGFPLGA---TTTEVKVAEAREAIADG   82 (203)
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEcHHHHH------HHHHHcCC-CCcEEEEEEecCCCC---CcHHHHHHHHHHHHHcC
Confidence            447888888787777777888776522221      12222222 223444454445544   24466666688999999


Q ss_pred             CcEEEEeeccc-------cchhHHHH---hc-CCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEE--ee--c
Q 012352          112 ADYIDVELQVA-------REFNDSIR---GK-KPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA--TT--A  176 (465)
Q Consensus       112 ~~~iDiEl~~~-------~~~~~~l~---~~-~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKia--~~--~  176 (465)
                      +|-||+=++..       +...+++.   .. +.-..|+|+-....    +.+++....+-+.++|||++|.-  ..  .
T Consensus        83 Adevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l----~~~~i~~a~ria~e~GaD~IKTsTG~~~~~  158 (203)
T cd00959          83 ADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLL----TDEEIIKACEIAIEAGADFIKTSTGFGPGG  158 (203)
T ss_pred             CCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC----CHHHHHHHHHHHHHhCCCEEEcCCCCCCCC
Confidence            99999976653       11233333   22 21224444433222    35678888888999999999997  33  3


Q ss_pred             CCHHHHHHHHHHhc
Q 012352          177 LDITDVARVFQITV  190 (465)
Q Consensus       177 ~~~~D~~~ll~~~~  190 (465)
                      .+++|+..+.+...
T Consensus       159 at~~~v~~~~~~~~  172 (203)
T cd00959         159 ATVEDVKLMKEAVG  172 (203)
T ss_pred             CCHHHHHHHHHHhC
Confidence            57788877777655

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=94.85  E-value=0.053  Score=56.56  Aligned_cols=40  Identities=25%  Similarity=0.263  Sum_probs=34.9

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHH
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRA  417 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a  417 (465)
                      ..++++++|+|+ |.+|+.++..|.+.|++|+++.|+..+.
T Consensus        57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~   97 (390)
T PLN02657         57 EPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGI   97 (390)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhc
Confidence            356789999998 7899999999999999999999987653

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=94.84  E-value=0.044  Score=55.98  Aligned_cols=74  Identities=16%  Similarity=0.149  Sum_probs=48.5

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHH-HH---HHHCC----c--c--cchh---cccccCCCCe
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARE-LA---ETVGG----H--A--LSLA---DLENFNPEDG  442 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~-la---~~~~~----~--~--~~~~---~l~~~~~~~~  442 (465)
                      +++++|+|+|+ |-+|+.++..|.+.|.+|+.++|....... +.   ...+.    .  .  .++.   ++.. .+.++
T Consensus        13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~-~~~~~   91 (348)
T PRK15181         13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQK-ACKNV   91 (348)
T ss_pred             ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHH-HhhCC
Confidence            56789999997 789999999999999999999885432221 11   11110    0  1  1222   2222 34568


Q ss_pred             eEEEecCCCCC
Q 012352          443 MILANTTSIGM  453 (465)
Q Consensus       443 DilInaT~~gm  453 (465)
                      |+||+++..+.
T Consensus        92 d~ViHlAa~~~  102 (348)
T PRK15181         92 DYVLHQAALGS  102 (348)
T ss_pred             CEEEECccccC
Confidence            99999997653

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.84  E-value=0.036  Score=48.72  Aligned_cols=33  Identities=27%  Similarity=0.577  Sum_probs=29.7

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC-eEEEEECC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~  413 (465)
                      +++|+|+|+|++|..++..|+..|+ ++++++.+
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            4789999999999999999999999 99999853

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK10637 cysG siroheme synthase; Provisional

Probab=94.82  E-value=0.06  Score=57.44  Aligned_cols=41  Identities=17%  Similarity=0.272  Sum_probs=36.2

Q ss_pred             CcccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          374 GVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       374 ~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      |.+.++++|+|||+|+|.+|..=+..|.+.|++|+|++.+.
T Consensus         5 P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~   45 (457)
T PRK10637          5 PIFCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAF   45 (457)
T ss_pred             ceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            45678999999999999999888889999999999998764

>cd08293 PTGR2 Prostaglandin reductase

Probab=94.80  E-value=0.1  Score=52.76  Aligned_cols=70  Identities=23%  Similarity=0.302  Sum_probs=51.8

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCcc-cchh------cccccCCCCeeEEEecCC
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGHA-LSLA------DLENFNPEDGMILANTTS  450 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~~-~~~~------~l~~~~~~~~DilInaT~  450 (465)
                      +.+|+|.|+ |++|.+++..++..|+ +|+++.+++++.+.+.++++... ++..      .+.+.....+|+++++++
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g  233 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVG  233 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCC
Confidence            379999998 8999999998899999 89999999998877777677532 2211      111111246899999876

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=94.76  E-value=0.13  Score=52.24  Aligned_cols=69  Identities=28%  Similarity=0.251  Sum_probs=49.3

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc-cchhcccccCCCCeeEEEecCCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA-LSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~-~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      .+.+|+|.|+|++|.+++..++..|++|+++.+++++ .+++++++... ++..+..   ...+|+++.+++.+
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~-~~~a~~~Ga~~vi~~~~~~---~~~~d~~i~~~~~~  234 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAA-RRLALALGAASAGGAYDTP---PEPLDAAILFAPAG  234 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHH-HHHHHHhCCceeccccccC---cccceEEEECCCcH
Confidence            3789999999999999888888899999999999888 56778887643 2221111   12467667666543

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=94.72  E-value=0.041  Score=55.87  Aligned_cols=33  Identities=30%  Similarity=0.227  Sum_probs=30.1

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCH
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      |++||+|+ |.+|+.++..|.+.|++|++++|..
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~   34 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRS   34 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCC
Confidence            58999998 7899999999999999999999875

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=94.72  E-value=0.069  Score=60.30  Aligned_cols=68  Identities=21%  Similarity=0.256  Sum_probs=46.6

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      +++.|+|+|.+|.+++..|.+.|.  +|++++|++++.+.+. +++.......+..+ .+.++|+||-|+|.
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~-~~g~~~~~~~~~~~-~~~~aDvVilavp~   73 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV-SLGVIDRGEEDLAE-AVSGADVIVLAVPV   73 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH-HCCCCCcccCCHHH-HhcCCCEEEECCCH
Confidence            679999999999999999999983  8999999988866543 33321001112222 23456777777764

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=94.72  E-value=0.066  Score=52.67  Aligned_cols=71  Identities=24%  Similarity=0.383  Sum_probs=51.8

Q ss_pred             EEEEcc-chhHHHHHHHHHHCC----CeEEEEECCHHHHHHHHHHHCCc---c--cc---hhcccccCCCCeeEEEecCC
Q 012352          384 FVVIGA-GGAGKALAYGAKAKG----ARVVIANRTYDRARELAETVGGH---A--LS---LADLENFNPEDGMILANTTS  450 (465)
Q Consensus       384 vlV~Ga-Gg~g~ai~~~L~~~G----~~v~i~~R~~~~a~~la~~~~~~---~--~~---~~~l~~~~~~~~DilInaT~  450 (465)
                      +.|+|+ |.+|..+++.|+..|    .+|+++++++++++..+.++...   .  ..   .+++.+ .+.++|+||.+++
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~-~~~~aDiVv~t~~   79 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYE-AFKDADVVIITAG   79 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHH-HhCCCCEEEECCC
Confidence            469999 789999999999888    48999999988887766655311   0  01   122233 4678999999998


Q ss_pred             CCCCC
Q 012352          451 IGMQP  455 (465)
Q Consensus       451 ~gm~~  455 (465)
                      .+-.+
T Consensus        80 ~~~~~   84 (263)
T cd00650          80 VGRKP   84 (263)
T ss_pred             CCCCc
Confidence            86554

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=94.72  E-value=0.041  Score=53.60  Aligned_cols=36  Identities=22%  Similarity=0.333  Sum_probs=32.5

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCH
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY  414 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~  414 (465)
                      +++++|+|+|+||+|..++..|+..|+ ++++++++.
T Consensus        22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            567899999999999999999999998 999988653

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=94.70  E-value=0.026  Score=55.37  Aligned_cols=68  Identities=18%  Similarity=0.168  Sum_probs=45.8

Q ss_pred             EEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCCC
Q 012352          384 FVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       384 vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      |||+|+ |.+|+.++..|.+.|++|+.++|+..+...+... ......-..+.+ .+.+.|+||++++..+
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~D~Vvh~a~~~~   69 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWE-GYKPWAPLAESE-ALEGADAVINLAGEPI   69 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccce-eeecccccchhh-hcCCCCEEEECCCCCc
Confidence            589987 7899999999999999999999987764332110 000000011222 4567899999998644

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=94.70  E-value=0.075  Score=50.81  Aligned_cols=45  Identities=27%  Similarity=0.389  Sum_probs=37.8

Q ss_pred             EEEEEccchhHHHHHHHHHHC--CC-eEEEEECCHHHHHHHHHHHCCc
Q 012352          383 LFVVIGAGGAGKALAYGAKAK--GA-RVVIANRTYDRARELAETVGGH  427 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~--G~-~v~i~~R~~~~a~~la~~~~~~  427 (465)
                      ++.++|.|.+|..++..+.+-  ++ -+.+++|+.++++++.+.++..
T Consensus         2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~   49 (255)
T COG1712           2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRR   49 (255)
T ss_pred             eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCC
Confidence            578999999999999888643  35 6889999999999998887653

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.68  E-value=0.058  Score=53.56  Aligned_cols=38  Identities=26%  Similarity=0.330  Sum_probs=34.9

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARE  419 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~  419 (465)
                      +++.|+|+|-+|.+++..|+..|++|+++++++++.+.
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~   41 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDR   41 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHH
Confidence            57999999999999999999999999999999988753

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=94.67  E-value=0.046  Score=57.46  Aligned_cols=38  Identities=26%  Similarity=0.334  Sum_probs=35.4

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      ..+.||++.|+|.|.+|+.++..+..+|++|+.++|+.
T Consensus       147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~  184 (409)
T PRK11790        147 FEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIED  184 (409)
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            46889999999999999999999999999999999864

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=94.66  E-value=0.099  Score=54.17  Aligned_cols=71  Identities=27%  Similarity=0.376  Sum_probs=51.8

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc-cchh---cccccCCCCeeEEEecCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA-LSLA---DLENFNPEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~-~~~~---~l~~~~~~~~DilInaT~~  451 (465)
                      .+++++|.|+|++|.+++..++..|++|+++.++.++-.+++++++... ++..   .+.+ ....+|++|++++.
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~-~~~~~D~vid~~G~  252 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKE-AVGTMDFIIDTVSA  252 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHH-hhCCCcEEEECCCc
Confidence            4789999999999999999999999998888887666556667777532 2221   2222 22358999999864

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=94.64  E-value=0.063  Score=53.58  Aligned_cols=39  Identities=31%  Similarity=0.404  Sum_probs=34.8

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAE  422 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~  422 (465)
                      +++|+|+|.+|..++..|++.|.+|+++.| .++.+++.+
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~   40 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRE   40 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHh
Confidence            589999999999999999999999999999 777776654

>PLN02427 UDP-apiose/xylose synthase

Probab=94.64  E-value=0.058  Score=55.86  Aligned_cols=75  Identities=19%  Similarity=0.178  Sum_probs=50.6

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHHH----C--Ccc--cchh---cccccCCCCee
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKG-ARVVIANRTYDRARELAETV----G--GHA--LSLA---DLENFNPEDGM  443 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G-~~v~i~~R~~~~a~~la~~~----~--~~~--~~~~---~l~~~~~~~~D  443 (465)
                      ..++.++|||+|+ |-+|+.++..|.+.| .+|+.++|+.++...+....    .  ...  .++.   .+.+ .+.++|
T Consensus        10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~-~~~~~d   88 (386)
T PLN02427         10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEG-LIKMAD   88 (386)
T ss_pred             CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHH-HhhcCC
Confidence            3455678999997 789999999999985 79999999877665543221    0  011  1221   2223 345689


Q ss_pred             EEEecCCCC
Q 012352          444 ILANTTSIG  452 (465)
Q Consensus       444 ilInaT~~g  452 (465)
                      +|||+++..
T Consensus        89 ~ViHlAa~~   97 (386)
T PLN02427         89 LTINLAAIC   97 (386)
T ss_pred             EEEEccccc
Confidence            999999753

>PRK08507 prephenate dehydrogenase; Validated

Probab=94.64  E-value=0.074  Score=52.63  Aligned_cols=66  Identities=17%  Similarity=0.193  Sum_probs=46.7

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ++.|+|.|.+|.+++..|.+.|.  +|++++|++++.+.+. +.+... ...+..+  ..++|+||-|+|..
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~-~~g~~~-~~~~~~~--~~~aD~Vilavp~~   69 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL-ELGLVD-EIVSFEE--LKKCDVIFLAIPVD   69 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH-HCCCCc-ccCCHHH--HhcCCEEEEeCcHH
Confidence            58899999999999999999885  7999999998877654 333210 0111222  12378888888764

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=94.61  E-value=0.073  Score=47.34  Aligned_cols=38  Identities=29%  Similarity=0.469  Sum_probs=34.0

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Q 012352          384 FVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAE  422 (465)
Q Consensus       384 vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~  422 (465)
                      ++|+|+|++|.-.++.|++.|.+|+++.|.. +++.+.+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~   38 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKE   38 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhh
Confidence            6899999999999999999999999999998 7777543

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PTZ00117 malate dehydrogenase; Provisional

Probab=94.58  E-value=0.094  Score=53.25  Aligned_cols=73  Identities=18%  Similarity=0.192  Sum_probs=50.9

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHC--Cc------ccc-hhcccccCCCCeeEEEecC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKG-ARVVIANRTYDRARELAETVG--GH------ALS-LADLENFNPEDGMILANTT  449 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G-~~v~i~~R~~~~a~~la~~~~--~~------~~~-~~~l~~~~~~~~DilInaT  449 (465)
                      +.+++.|+|+|.+|..+++.++..| .++.++++++++++..+-++.  ..      .+. ..+. + .+.++|+||.+.
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~-~-~l~~ADiVVita   81 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNY-E-DIKDSDVVVITA   81 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCH-H-HhCCCCEEEECC
Confidence            4578999999999999999999989 499999998876554332221  10      011 1122 2 356899999999


Q ss_pred             CCCCC
Q 012352          450 SIGMQ  454 (465)
Q Consensus       450 ~~gm~  454 (465)
                      +.+-.
T Consensus        82 g~~~~   86 (319)
T PTZ00117         82 GVQRK   86 (319)
T ss_pred             CCCCC
Confidence            77544

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=94.57  E-value=0.05  Score=54.34  Aligned_cols=71  Identities=27%  Similarity=0.352  Sum_probs=56.7

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCccc----chhcccccCCCCeeEEEecCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL----SLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~----~~~~l~~~~~~~~DilInaT~~  451 (465)
                      ..-+|.|+|.|-+|-..++-...+|++|+|.+++.+|.+.+-+.++.+..    ....+.+ ...++|+||++.=+
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee-~v~~aDlvIgaVLI  241 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEE-AVKKADLVIGAVLI  241 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHH-HhhhccEEEEEEEe
Confidence            34579999999888888888889999999999999999999998886532    2234444 56788999988633

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=94.55  E-value=0.1  Score=53.63  Aligned_cols=71  Identities=24%  Similarity=0.355  Sum_probs=51.4

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCc-ccchh------cccccCCCCeeEEEecCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGH-ALSLA------DLENFNPEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~-~~~~~------~l~~~~~~~~DilInaT~~  451 (465)
                      .+++|+|.|+|++|..++..++..|+ +|+++.+++++.+ ++++++.. .++..      ++.+...+.+|++|++++.
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~-~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~  269 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLA-LARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGS  269 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHH-HHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCC
Confidence            36799999999999999999999999 7999999988855 55777753 22221      1221112358999999864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.55  E-value=0.15  Score=50.89  Aligned_cols=69  Identities=19%  Similarity=0.208  Sum_probs=50.6

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc-cchhcccccCCCCeeEEEecCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA-LSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~-~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      .+.+++|.|+|++|.+++..++..|++|+++.++.++.+.+. .++... ..+.+..  ....+|+++++++.
T Consensus       155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~-~~g~~~~~~~~~~~--~~~~~d~vid~~g~  224 (319)
T cd08242         155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALAR-RLGVETVLPDEAES--EGGGFDVVVEATGS  224 (319)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH-HcCCcEEeCccccc--cCCCCCEEEECCCC
Confidence            467899999999999999999999999999998888766554 476432 2222211  22458999998754

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>PLN02712 arogenate dehydrogenase

Probab=94.53  E-value=0.097  Score=58.44  Aligned_cols=69  Identities=22%  Similarity=0.218  Sum_probs=46.4

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ..+++.|+|.|.+|++++..|.+.|.+|++++|+..+  ..+.+++...  ..+..+....++|+||-|+|..
T Consensus        51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~--~~A~~~Gv~~--~~d~~e~~~~~aDvViLavP~~  119 (667)
T PLN02712         51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS--LAARSLGVSF--FLDPHDLCERHPDVILLCTSII  119 (667)
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHcCCEE--eCCHHHHhhcCCCEEEEcCCHH
Confidence            3468999999999999999999999999999998544  3355555321  1111110112367777777643

>PLN02240 UDP-glucose 4-epimerase

Probab=94.51  E-value=0.069  Score=54.17  Aligned_cols=35  Identities=26%  Similarity=0.401  Sum_probs=31.3

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      +.+|+++|+|+ |++|+.++..|.+.|++|++++|.
T Consensus         3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~   38 (352)
T PLN02240          3 LMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNL   38 (352)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            56789999987 789999999999999999999764

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=94.50  E-value=0.05  Score=57.15  Aligned_cols=40  Identities=25%  Similarity=0.249  Sum_probs=36.9

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAE  422 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~  422 (465)
                      +|.|+|.|-+|..++..|++.|++|++++|++++.+.+.+
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~   41 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNK   41 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhc
Confidence            5889999999999999999999999999999999887764

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK14041 oxaloacetate decarboxylase; Provisional

Probab=94.49  E-value=5.6  Score=42.61  Aligned_cols=228  Identities=14%  Similarity=0.136  Sum_probs=140.2

Q ss_pred             cccccCCCCCCcEE-EEeeccCCHHHHHHHHHhhhhcCCCEEEE----EecC---CCCCCchhHHHHHHhhC-CCcEEEE
Q 012352           13 KLVSGGMRKNPTLI-CVPIMGESVDKMVVDMGKANASGADLVEI----RLDG---LKNFNPRENIKTLIKES-PVPTLFT   83 (465)
Q Consensus        13 ~~~~~~~~~~~~~i-cv~l~~~t~~e~~~~~~~~~~~~~D~vEl----RlD~---l~~~~~~~~l~~l~~~~-~~PiI~T   83 (465)
                      +|..-++++..-.. .+.+   +.++.+.-++.+.+.|.+.+|.    ..|.   |-+.++.+.++.+++.. +.++-.-
T Consensus         4 ~I~DtTlRDG~Qs~~~~~~---~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l   80 (467)
T PRK14041          4 MFVDTTLRDGHQSLIATRM---RTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQML   80 (467)
T ss_pred             EEEECCCCccccCcCCccC---CHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEE
Confidence            44555566655443 3333   4455555555555679999999    3332   12224566777776543 4556555


Q ss_pred             eccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEeecccc--chhHHHHhcCCCCcEEEEEecc-CCCCC--CHHHHHHH
Q 012352           84 YRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAR--EFNDSIRGKKPEKCKVIVSSHN-YQYTP--SVEDLSNL  158 (465)
Q Consensus        84 ~R~~~eGG~~~~~~~~~~~~l~~~~~~~~~~iDiEl~~~~--~~~~~l~~~~~~~~~iI~S~H~-f~~tp--s~~el~~~  158 (465)
                      +|..+--|.....++-...+++.+++.|++.+-|=....+  ...+.+..++..+..+...... |  .|  +.+.+.+.
T Consensus        81 ~r~~N~~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~--~p~~t~e~~~~~  158 (467)
T PRK14041         81 LRGQNLVGYRHYADDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTV--SPVHTLEYYLEF  158 (467)
T ss_pred             eccccccCcccccchhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEecc--CCCCCHHHHHHH
Confidence            7876666653444444556788899999998887544332  1222222233345555533332 3  24  56779999


Q ss_pred             HHHHHHcCCCEEEEEeec--CCHHHHHHHHHHhcc-CCCCEEEE--ecCccchhhhhhccccCCccccccccCccCCCCC
Q 012352          159 VARIQASGADIVKFATTA--LDITDVARVFQITVH-SQVPIIGL--VMGERGLISRILCAKFGGFLTFGTLENGIVSAPG  233 (465)
Q Consensus       159 ~~~~~~~gadivKia~~~--~~~~D~~~ll~~~~~-~~~p~i~~--~MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApG  233 (465)
                      .+++.+.|||.+=|+=|.  -+|.++.++...++. .+.|+-..  +.-.+|..+=+..-..|....=+++.. .+...|
T Consensus       159 a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~~-~g~gag  237 (467)
T PRK14041        159 ARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAGADMFDTAISP-FSMGTS  237 (467)
T ss_pred             HHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhCCCEEEeeccc-cCCCCC
Confidence            999999999998888665  578999999887654 35666543  344445555666666676655556553 233457


Q ss_pred             CCChhhHHhhhcc
Q 012352          234 QPTIKDLLDLYNF  246 (465)
Q Consensus       234 Q~~~~~l~~~~~~  246 (465)
                      |++.+++-..++-
T Consensus       238 N~atE~lv~~L~~  250 (467)
T PRK14041        238 QPPFESMYYAFRE  250 (467)
T ss_pred             ChhHHHHHHHHHh
Confidence            9999998877764

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=94.46  E-value=0.076  Score=53.74  Aligned_cols=73  Identities=19%  Similarity=0.119  Sum_probs=52.5

Q ss_pred             CCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHH--HHHHHCC-c----c--cchhc---ccccCCCCeeEEE
Q 012352          380 AGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARE--LAETVGG-H----A--LSLAD---LENFNPEDGMILA  446 (465)
Q Consensus       380 ~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~--la~~~~~-~----~--~~~~~---l~~~~~~~~DilI  446 (465)
                      .+++|+|+||+ -+|..++..|.++|+.|.-.-|++++-+.  ...++.+ .    .  .|+.+   +.. .+.+.|.|+
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~-ai~gcdgVf   83 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDK-AIDGCDGVF   83 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHH-HHhCCCEEE
Confidence            46899999996 59999999999999999999999887444  3444432 1    1  12222   233 467899999


Q ss_pred             ecCCCCC
Q 012352          447 NTTSIGM  453 (465)
Q Consensus       447 naT~~gm  453 (465)
                      ++++--.
T Consensus        84 H~Asp~~   90 (327)
T KOG1502|consen   84 HTASPVD   90 (327)
T ss_pred             EeCccCC
Confidence            9886543

>PRK08309 short chain dehydrogenase; Provisional

Probab=94.43  E-value=0.11  Score=48.06  Aligned_cols=42  Identities=21%  Similarity=0.199  Sum_probs=37.4

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETV  424 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~  424 (465)
                      +++|+|+.|++.+++..|.+.|++|.+..|+.++++.+...+
T Consensus         2 ~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l   43 (177)
T PRK08309          2 HALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVKRES   43 (177)
T ss_pred             EEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHh
Confidence            589999888989999999999999999999999888877655

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=94.41  E-value=0.15  Score=52.34  Aligned_cols=71  Identities=23%  Similarity=0.313  Sum_probs=52.6

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc-cch---hcccccCCCCeeEEEecCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA-LSL---ADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~-~~~---~~l~~~~~~~~DilInaT~~  451 (465)
                      .+.+++|.|+|++|.+++..++..|++++++.++.++...+.++++... +..   +.+.+ ....+|++|++++.
T Consensus       180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~-~~~~~D~vid~~g~  254 (357)
T PLN02514        180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQE-AADSLDYIIDTVPV  254 (357)
T ss_pred             CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHH-hcCCCcEEEECCCc
Confidence            4678999999999999999999999998888888888777777777532 211   11222 12358999999874

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.40  E-value=0.14  Score=49.16  Aligned_cols=71  Identities=25%  Similarity=0.406  Sum_probs=50.3

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchhc------ccccCCCCeeEEEecCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLAD------LENFNPEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~~------l~~~~~~~~DilInaT~~  451 (465)
                      .+++++|+|+|++|++++..+...|.+|+++.+++++.+.+ ..++.. .++..+      +.....+.+|++|++++.
T Consensus       134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~  211 (271)
T cd05188         134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELA-KELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGG  211 (271)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH-HHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCC
Confidence            46799999999999999999999999999999998776655 445432 122111      100023468999999875

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=94.34  E-value=0.13  Score=52.00  Aligned_cols=71  Identities=20%  Similarity=0.311  Sum_probs=51.6

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHCCcc-cchh-----ccccc-CCCCeeEEEecCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANRTYDRARELAETVGGHA-LSLA-----DLENF-NPEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~-v~i~~R~~~~a~~la~~~~~~~-~~~~-----~l~~~-~~~~~DilInaT~~  451 (465)
                      .+.+++|+|+|++|.+++..++..|++ |+++++++++.+ ++.+++... ++..     .+.+. ....+|++|++++.
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~-~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~  241 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLE-LAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGN  241 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH-HHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCC
Confidence            378999999999999999999999996 999999988854 456777532 2221     12111 12368999999864

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=94.33  E-value=4.4  Score=44.74  Aligned_cols=228  Identities=15%  Similarity=0.155  Sum_probs=143.6

Q ss_pred             cccccCCCCCCcEEEEeeccCCHHHHHHHHHhhhhcCCCEEEEE----ecC---CCCCCchhHHHHHHhhC-CCcEEEEe
Q 012352           13 KLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIR----LDG---LKNFNPRENIKTLIKES-PVPTLFTY   84 (465)
Q Consensus        13 ~~~~~~~~~~~~~icv~l~~~t~~e~~~~~~~~~~~~~D~vElR----lD~---l~~~~~~~~l~~l~~~~-~~PiI~T~   84 (465)
                      +|..-++++..-...  -+.=+.++.+.-+..+...|.+.+|.-    .|.   |-.-++.+.++.+++.. +.++-.-+
T Consensus         5 ~i~DtTlRDG~Qs~~--atr~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~   82 (592)
T PRK09282          5 KITDTTLRDAHQSLL--ATRMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLL   82 (592)
T ss_pred             EEEECCCCccccccC--CccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEe
Confidence            455556666654442  122344455555555556799999995    552   22235667787776553 56777778


Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEeeccc--cchhHHHHhcCCCCcEEE--EEeccCCCCC--CHHHHHHH
Q 012352           85 RPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVA--REFNDSIRGKKPEKCKVI--VSSHNYQYTP--SVEDLSNL  158 (465)
Q Consensus        85 R~~~eGG~~~~~~~~~~~~l~~~~~~~~~~iDiEl~~~--~~~~~~l~~~~~~~~~iI--~S~H~f~~tp--s~~el~~~  158 (465)
                      |..+-=|..+-.++-..+.++.+.+.|++.+=|=....  +...+.+..++..+..+-  +||- +  .|  +.+.+.+.
T Consensus        83 Rg~N~~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t-~--~p~~t~~~~~~~  159 (592)
T PRK09282         83 RGQNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYT-T--SPVHTIEKYVEL  159 (592)
T ss_pred             ccccccccccccchhhHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEec-c--CCCCCHHHHHHH
Confidence            87666666556666777788999999999877754332  222222332333444444  3332 2  34  56789999


Q ss_pred             HHHHHHcCCCEEEEEeec--CCHHHHHHHHHHhcc-CCCCEEE--EecCccchhhhhhccccCCccccccccCccCCCCC
Q 012352          159 VARIQASGADIVKFATTA--LDITDVARVFQITVH-SQVPIIG--LVMGERGLISRILCAKFGGFLTFGTLENGIVSAPG  233 (465)
Q Consensus       159 ~~~~~~~gadivKia~~~--~~~~D~~~ll~~~~~-~~~p~i~--~~MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApG  233 (465)
                      .+++.+.|+|.+=|+=|.  -+|.++.++.+.+.. .+.|+-.  .+...++..+=+..-..|..+.=+++.. ...-.|
T Consensus       160 a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ai~g-~g~~ag  238 (592)
T PRK09282        160 AKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTAISP-LAFGTS  238 (592)
T ss_pred             HHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHHHHHHhCCCEEEeeccc-cCCCcC
Confidence            999999999998888665  468999998887654 3555443  4455556666666666676655555553 223357


Q ss_pred             CCChhhHHhhhcc
Q 012352          234 QPTIKDLLDLYNF  246 (465)
Q Consensus       234 Q~~~~~l~~~~~~  246 (465)
                      |+++.++...++.
T Consensus       239 n~~~e~vv~~L~~  251 (592)
T PRK09282        239 QPPTESMVAALKG  251 (592)
T ss_pred             CHhHHHHHHHHHh
Confidence            9998888776664

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=94.32  E-value=0.12  Score=51.79  Aligned_cols=66  Identities=17%  Similarity=0.130  Sum_probs=45.2

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~-v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      .+++++|+|+|++|..++..++..|++ |.+++++.++.+.. ..+  ..++..+  . ....+|++|+|++.
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a-~~~--~~i~~~~--~-~~~g~Dvvid~~G~  210 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGA-TGY--EVLDPEK--D-PRRDYRAIYDASGD  210 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhh-hhc--cccChhh--c-cCCCCCEEEECCCC
Confidence            356899999999999999988899995 77778877775432 222  1122111  1 12357999999875

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=94.30  E-value=0.1  Score=52.08  Aligned_cols=38  Identities=29%  Similarity=0.296  Sum_probs=35.1

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARE  419 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~  419 (465)
                      ++|.|+|+|-+|.+++..|+..|++|+++++++++.+.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~   42 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSR   42 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence            67999999999999999999999999999999988653

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=94.26  E-value=0.095  Score=56.58  Aligned_cols=40  Identities=25%  Similarity=0.304  Sum_probs=36.6

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHH
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRAREL  420 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~l  420 (465)
                      -++|.|+|+|-||+.|+..|+..|++|++++|++++++..
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~   44 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARA   44 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHH
Confidence            3679999999999999999999999999999999988754

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=94.25  E-value=0.024  Score=56.59  Aligned_cols=67  Identities=21%  Similarity=0.167  Sum_probs=45.9

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchh---cccccCCCCeeEEEecCCC
Q 012352          383 LFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLA---DLENFNPEDGMILANTTSI  451 (465)
Q Consensus       383 ~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~---~l~~~~~~~~DilInaT~~  451 (465)
                      +++|+|+ |.+|+.++..|.+.|++|++++|+.++...+.. .+...  .++.   ++.+ .+..+|+||++++.
T Consensus         2 ~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~D~~~~~~l~~-~~~~~d~vi~~a~~   74 (328)
T TIGR03466         2 KVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEG-LDVEIVEGDLRDPASLRK-AVAGCRALFHVAAD   74 (328)
T ss_pred             eEEEECCccchhHHHHHHHHHCCCEEEEEEecCcccccccc-CCceEEEeeCCCHHHHHH-HHhCCCEEEEecee
Confidence            6899987 789999999999999999999998766443321 11111  1222   2333 34567999998753

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=94.20  E-value=0.056  Score=56.16  Aligned_cols=34  Identities=24%  Similarity=0.302  Sum_probs=31.2

Q ss_pred             CcEEEEEc-cchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          381 GKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       381 ~k~vlV~G-aGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      .+++.|+| .|.+|.+++.+|.+.|..|++++|+.
T Consensus        98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            47899998 89999999999999999999999864

>PLN02740 Alcohol dehydrogenase-like

Probab=94.17  E-value=0.13  Score=53.22  Aligned_cols=71  Identities=18%  Similarity=0.279  Sum_probs=51.4

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCc-ccchh--------cccccCCCCeeEEEecC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGH-ALSLA--------DLENFNPEDGMILANTT  449 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~-~~~~~--------~l~~~~~~~~DilInaT  449 (465)
                      .+++|+|+|+|++|.+++..++..|+ +|+++.+++++.+. +++++.. .++..        .+.+...+.+|++|+++
T Consensus       198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~-a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~  276 (381)
T PLN02740        198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEK-GKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECA  276 (381)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHH-HHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECC
Confidence            47899999999999999999999999 79999999888554 4667643 22211        11111112689999998


Q ss_pred             CC
Q 012352          450 SI  451 (465)
Q Consensus       450 ~~  451 (465)
                      +.
T Consensus       277 G~  278 (381)
T PLN02740        277 GN  278 (381)
T ss_pred             CC
Confidence            85

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	465
2gpt_A	523	Crystal Structure Of Arabidopsis Dehydroquinate Deh		0.0
2o7q_A	523	Crystal Structure Of The A. Thaliana Dhq-Dehydroshi		0.0
1nvt_A	287	Crystal Structure Of Shikimate Dehydrogenase (Aroe		2e-23
2egg_A	297	Crystal Structure Of Shikimate 5-Dehydrogenase (Aro		6e-23
3js3_A	258	Crystal Structure Of Type I 3-Dehydroquinate Dehydr		5e-22
3l2i_A	276	1.85 Angstrom Crystal Structure Of The 3-Dehydroqui		4e-19
3m7w_A	255	Crystal Structure Of Type I 3-Dehydroquinate Dehydr		4e-19
3don_A	277	Crystal Structure Of Shikimate Dehydrogenase From S		7e-19
4guf_A	276	1.5 Angstrom Crystal Structure Of The Salmonella En		2e-18
3nnt_A	276	Crystal Structure Of K170m Mutant Of Type I 3-Dehyd		2e-18
3o1n_A	276	1.03 Angstrom Crystal Structure Of Q236a Mutant Typ		2e-18
1qfe_A	252	The Structure Of Type I 3-Dehydroquinate Dehydratas		3e-18
2hk7_A	269	Crystal Structure Of Shikimate Dehydrogenase From A		1e-17
2hk9_A	275	Crystal Structure Of Shikimate Dehydrogenase From A		1e-17
1wxd_A	263	Crystal Structure Of Shikimate 5-dehydrogenase (aro		6e-15
2ox1_A	196	Archaeal Dehydroquinase Length = 196		1e-14
2yr1_A	257	Crystal Structure Of 3-Dehydroquinate Dehydratase F		4e-14
1nyt_A	271	Shikimate Dehydrogenase Aroe Complexed With Nadp+ L		3e-13
3u62_A	253	Crystal Structure Of Shikimate Dehydrogenase From T		5e-13
1sfl_A	238	1.9a Crystal Structure Of Staphylococcus Aureus Typ		1e-12
3toz_A	315	2.2 Angstrom Crystal Structure Of Shikimate 5-Dehyd		2e-12
1sfj_A	238	2.4a Crystal Structure Of Staphylococcus Aureus Typ		3e-12
2egz_A	219	Crystal Structure Of The 3-Dehydroquinate Dehydrata		2e-11
4fq8_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		3e-11
4fr5_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		3e-11
4fpx_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		3e-11
4foo_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		3e-11
4fos_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		3e-11
3phg_A	269	Crystal Structure Of The Shikimate 5-Dehydrogenase		3e-11
4fsh_A	271	Crystal Structure Of Shikimate Dehydrogenase (aroe)		3e-11
3fbt_A	282	Crystal Structure Of A Chorismate MutaseSHIKIMATE 5		1e-10
3t4e_A	312	1.95 Angstrom Crystal Structure Of Shikimate 5-Dehy		2e-10
3l9c_A	259	The Crystal Structure Of Smu.777 From Streptococcus		2e-10
1npd_A	288	X-Ray Structure Of Shikimate Dehydrogenase Complexe		8e-09
1vi2_A	300	Crystal Structure Of Shikimate-5-Dehydrogenase With		9e-09
1p74_A	272	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		4e-08
3tum_B	269	2.15 Angstrom Resolution Crystal Structure Of A Shi		5e-08
3o8q_A	281	1.45 Angstrom Resolution Crystal Structure Of Shiki		4e-07
3pgj_A	302	2.49 Angstrom Resolution Crystal Structure Of Shiki		4e-07
3o8q_B	275	1.45 Angstrom Resolution Crystal Structure Of Shiki		6e-07
2ocz_A	231	The Structure Of A Putative 3-dehydroquinate Dehydr		7e-07
3pwz_A	272	Crystal Structure Of An Ael1 Enzyme From Pseudomona		3e-06
3jyo_A	283	Quinate Dehydrogenase From Corynebacterium Glutamic		2e-05
2nlo_A	302	Crystal Structure Of The Quinate Dehydrogenase From		2e-05
1npy_A	271	Structure Of Shikimate 5-Dehydrogenase-Like Protein		5e-05

>pdb|2GPT|A Chain A, Crystal Structure Of Arabidopsis Dehydroquinate Dehydratase- Shikimate Dehydrogenase In Complex With Tartrate And Shikimate Length = 523

Iteration: 1
 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/446 (71%), Positives = 371/446 (83%), Gaps = 2/446 (0%)
Query: 21  KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPT 80
           KNP+LIC P+M +S+DKMV++  KA+  GADLVEIRLD LK+FNP E++KT+IK+SP+PT
Sbjct: 2   KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61
Query: 81  LFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVI 140
           LFTYRP WEGGQY+GDENER DVLRLAMELGADYIDVELQVA EF  SI GKKP K KVI
Sbjct: 62  LFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVI 121
Query: 141 VSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLV 200
           VSSHNYQ TPSVEDL  LVARIQ +GADIVK ATTA+DI DVAR+F IT  +QVP IGLV
Sbjct: 122 VSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLV 181
Query: 201 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIG 260
           MGERGL+SRILC+KFGG+LTFGTL++  VSAPGQPTIKDLLDLYNFR++GPDTKV+GIIG
Sbjct: 182 MGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIG 241
Query: 261 KPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVK 320
           KPV HSKSPI++N+AFKSV FNGV+VHLLVD++  F Q YSS+DFAGFSCTIPHKEAA++
Sbjct: 242 KPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQ 301
Query: 321 CCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR--GRLNVSGGVSSA 378
           CCDEVD +AKSIGAVN I+RR+SDGKL GYNTD +G+ISAIEDGLR  G  +     SS 
Sbjct: 302 CCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSP 361
Query: 379 LAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGHALSLADLENFN 438
           LA K  VVI                  +VVIANRTY+RA ELAE +GG ALSL DL+N++
Sbjct: 362 LASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYH 421
Query: 439 PEDGMILANTTSIGMQPKVDETPIPK 464
           PEDGM+LANTTS+GMQP V+ETPI K
Sbjct: 422 PEDGMVLANTTSMGMQPNVEETPISK 447

>pdb|2O7Q|A Chain A, Crystal Structure Of The A. Thaliana Dhq-Dehydroshikimate-Sdh- Shikimate-Nadp(H) Length = 523

Iteration: 1
 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/446 (71%), Positives = 370/446 (82%), Gaps = 2/446 (0%)
Query: 21  KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPT 80
           KNP+LIC P+M +S+DKMV++  KA+  GADLVEIRLD LK+FNP E++KT+IK+SP+PT
Sbjct: 2   KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61
Query: 81  LFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVI 140
           LFTYRP WEGGQY+GDENER DVLRLAMELGADYIDVELQVA EF  SI GKKP K KVI
Sbjct: 62  LFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVI 121
Query: 141 VSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLV 200
           VSSHNYQ TPSVEDL  LVARIQ +GADIVK ATTA+DI DVAR+F IT  +QVP IGLV
Sbjct: 122 VSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLV 181
Query: 201 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIG 260
           MGERGL+SRILC+KFGG+LTFGTL++  VSAPGQPTIKDLLDLYNFR++GPDTKV+GIIG
Sbjct: 182 MGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIG 241
Query: 261 KPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVK 320
           KPV HSKSPI++N+AFKSV FNGV+VHLLVD++  F Q YSS+DFAGFSCTIPHKEAA++
Sbjct: 242 KPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQ 301
Query: 321 CCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR--GRLNVSGGVSSA 378
            CDEVD +AKSIGAVN I+RR+SDGKL GYNTD +G+ISAIEDGLR  G  +     SS 
Sbjct: 302 XCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDXIGSISAIEDGLRSSGDPSSVPSSSSP 361
Query: 379 LAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGHALSLADLENFN 438
           LA K  VVI                  +VVIANRTY+RA ELAE +GG ALSL DL+N++
Sbjct: 362 LASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYH 421
Query: 439 PEDGMILANTTSIGMQPKVDETPIPK 464
           PEDGM+LANTTS+GMQP V+ETPI K
Sbjct: 422 PEDGMVLANTTSMGMQPNVEETPISK 447

>pdb|1NVT|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe Or Mj1084) In Complex With Nadp+ Length = 287

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 111/222 (50%), Gaps = 26/222 (11%)
Query: 253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFV--HLLVDDIAKFFQTYSSNDFAGFSC 310
           TKV G+IG PV HS SPI++N AFK  G N V+V   +L +++        +    GF+ 
Sbjct: 11  TKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIVGFNV 70
Query: 311 TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLN 370
           TIPHK   +K  DE+D  A+ IGAVN I  +  DGK  GYNTD +GA  A+E+ + GR+ 
Sbjct: 71  TIPHKIEIMKYLDEIDKDAQLIGAVNTI--KIEDGKAIGYNTDGIGARMALEEEI-GRVK 127
Query: 371 VSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVG----- 425
                         +VI                   ++IANRT ++A  LA+ +      
Sbjct: 128 DKN-----------IVIYGAGGAARAVAFELAKDNNIIIANRTVEKAEALAKEIAEKLNK 176
Query: 426 --GHALSLADLENFNPEDGM-ILANTTSIGMQPKVDETPIPK 464
             G  +  + L+     DG+ I+ N T IGM P +D  PI K
Sbjct: 177 KFGEEVKFSGLD--VDLDGVDIIINATPIGMYPNIDVEPIVK 216

>pdb|2EGG|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From Geobacillus Kaustophilus Length = 297

Iteration: 1
 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 113/224 (50%), Gaps = 19/224 (8%)
Query: 245 NFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSS 302
           N    G   KV+G+IG PV HS SP+++N+AF  +G    +    V+   +        +
Sbjct: 15  NLYFQGHMEKVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRA 74
Query: 303 NDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE 362
              AG + TIPHK A +   DEVD  A+ IGAVN II   +DG+L GYNTD +G + A+E
Sbjct: 75  LGIAGVNVTIPHKLAVIPFLDEVDEHARRIGAVNTII--NNDGRLVGYNTDGLGYVQALE 132
Query: 363 DGLRGRLNVSGGVSSALAGK-LFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRAREL- 420
           +     +N++      L GK + V+                   R+ +ANRT ++A  L 
Sbjct: 133 E----EMNIT------LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLV 182
Query: 421 --AETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPI 462
              +       SLA+ E    E  +I+ NTTS+GM P+V+  P+
Sbjct: 183 REGDERRSAYFSLAEAETRLAEYDIII-NTTSVGMHPRVEVQPL 225

>pdb|3JS3|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase (Arod) From Clostridium Difficile With Covalent Reaction Intermediate Length = 258

Iteration: 1
 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 122/233 (52%), Gaps = 14/233 (6%)
Query: 26  ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-----SPVPT 80
           ICVPI+G++   ++ +  +   +  D++E R+D  +N    + +K ++ E       +P 
Sbjct: 22  ICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDIPL 81
Query: 81  LFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDSIRGKKPEK-CK 138
           LFT+R + EGG+     +    + +     G  D IDVEL +  E  D +     +K  K
Sbjct: 82  LFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVK 141
Query: 139 VIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQIT-----VHSQ 193
           VI+S+H++  TP  E++ + + R+Q  GAD+ K A    +  DV  + + T     +++ 
Sbjct: 142 VIISNHDFNKTPKKEEIVSRLCRMQELGADLPKIAVMPQNEKDVLVLLEATNEMFKIYAD 201
Query: 194 VPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246
            PII + M   G+ISR+    FG  LTFG  ++  VSAPGQ + K+L  + N 
Sbjct: 202 RPIITMSMSGMGVISRLCGEIFGSALTFGAAKS--VSAPGQISFKELNSVLNL 252

>pdb|3L2I|A Chain A, 1.85 Angstrom Crystal Structure Of The 3-Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Lt2. Length = 276

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 113/229 (49%), Gaps = 18/229 (7%)
Query: 26  ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN-------IKTLIKESPV 78
           I V +MG+++  +  +      +  D++E R+D   N    E+       I+ +I + P+
Sbjct: 42  IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAR-EFNDSIRGKKPEK 136
             LFT+R   EGG+      + +D+ R A++ G  D ID+EL     E   ++       
Sbjct: 102 --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV-- 194
             VI+S+H++  TP+ E++   + ++Q  GADI K A       DV  +   TV  Q   
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 219
Query: 195 ---PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
              PII + M + G+ISR+    FG   TFG ++    SAPGQ ++ DL
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGQISVADL 266

>pdb|3M7W|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Lt2 In Covalent Complex With Dehydroquinate Length = 255

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 113/229 (49%), Gaps = 18/229 (7%)
Query: 26  ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN-------IKTLIKESPV 78
           I V +MG+++  +  +      +  D++E R+D   N    E+       I+ +I + P+
Sbjct: 21  IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 80
Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAR-EFNDSIRGKKPEK 136
             LFT+R   EGG+      + +D+ R A++ G  D ID+EL     E   ++       
Sbjct: 81  --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 138
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV-- 194
             VI+S+H++  TP+ E++   + ++Q  GADI K A       DV  +   TV  Q   
Sbjct: 139 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 198
Query: 195 ---PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
              PII + M + G+ISR+    FG   TFG ++    SAPGQ ++ DL
Sbjct: 199 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGQISVADL 245

>pdb|3DON|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Staphylococcus Epidermidis Length = 277

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 103/213 (48%), Gaps = 33/213 (15%)
Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVF--VHLLVDDIAKFFQTYSSNDFAGFSCTIP 313
           F +IG P+ HS SP++++  F+S+     +  +++ V+      +  S     GF+ TIP
Sbjct: 3   FAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIP 62
Query: 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTD---YVGAISAIEDGLRGRLN 370
           HKE  +   D+++  AKS+GAVN ++ +  DGK  GYNTD   YV  +  I +G+     
Sbjct: 63  HKERIIPYLDDINEQAKSVGAVNTVLVK--DGKWIGYNTDGIGYVNGLKQIYEGIEDAYI 120
Query: 371 V---SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGH 427
           +   +GG S  +A +L+ ++                   + +ANRT  R    +  +   
Sbjct: 121 LILGAGGASKGIANELYKIVRPT----------------LTVANRTMSRFNNWSLNINKI 164
Query: 428 ALSLAD--LENFNPEDGMILANTTSIGMQPKVD 458
            LS A+  L+ F+     I+ NTT  GM    D
Sbjct: 165 NLSHAESHLDEFD-----IIINTTPAGMNGNTD 192

>pdb|4GUF|A Chain A, 1.5 Angstrom Crystal Structure Of The Salmonella Enterica 3- Dehydroquinate Dehydratase (arod) E86a Mutant Length = 276

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 112/229 (48%), Gaps = 18/229 (7%)
Query: 26  ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN-------IKTLIKESPV 78
           I V +MG+++  +  +      +  D++E R+D   N    E+       I+ +I + P+
Sbjct: 42  IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAR-EFNDSIRGKKPEK 136
             LFT+R    GG+      + +D+ R A++ G  D ID+EL     E   ++       
Sbjct: 102 --LFTFRSAKAGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV-- 194
             VI+S+H++  TP+ E++   + ++Q  GADI K A       DV  +   TV  Q   
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 219
Query: 195 ---PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
              PII + M + G+ISR+    FG   TFG ++    SAPGQ ++ DL
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGQISVADL 266

>pdb|3NNT|A Chain A, Crystal Structure Of K170m Mutant Of Type I 3-Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Lt2 In Non-Covalent Complex With Dehydroquinate. Length = 276

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 112/229 (48%), Gaps = 18/229 (7%)
Query: 26  ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN-------IKTLIKESPV 78
           I V +MG+++  +  +      +  D++E R+D   N    E+       I+ +I + P+
Sbjct: 42  IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAR-EFNDSIRGKKPEK 136
             LFT+R   EGG+      + +D+ R A++ G  D ID+EL     E   ++       
Sbjct: 102 --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV-- 194
             VI+S+H++  TP+ E++   + ++Q  GADI   A       DV  +   TV  Q   
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPMIAVMPQTKADVLTLLTATVEMQERY 219
Query: 195 ---PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
              PII + M + G+ISR+    FG   TFG ++    SAPGQ ++ DL
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGQISVADL 266

>pdb|3O1N|A Chain A, 1.03 Angstrom Crystal Structure Of Q236a Mutant Type I Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Length = 276

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 112/229 (48%), Gaps = 18/229 (7%)
Query: 26  ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN-------IKTLIKESPV 78
           I V +MG+++  +  +      +  D++E R+D   N    E+       I+ +I + P+
Sbjct: 42  IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAR-EFNDSIRGKKPEK 136
             LFT+R   EGG+      + +D+ R A++ G  D ID+EL     E   ++       
Sbjct: 102 --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV-- 194
             VI+S+H++  TP+ E++   + ++Q  GADI K A       DV  +   TV  Q   
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 219
Query: 195 ---PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
              PII + M + G+ISR+    FG   TFG ++    SAPG  ++ DL
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGAISVADL 266

>pdb|1QFE|A Chain A, The Structure Of Type I 3-Dehydroquinate Dehydratase From Salmonella Typhi Length = 252

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 118/239 (49%), Gaps = 18/239 (7%)
Query: 14  LVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKT-- 71
           ++  GM K    I V +MG  ++ +  +      +  D++E R+D   +    +++ T  
Sbjct: 10  IIGEGMPK----IIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAA 65
Query: 72  -LIKES--PVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVA-REFN 126
            +I+++   +P LFT+R   EGG+        + + R A++ G  D ID+EL     +  
Sbjct: 66  RVIRDAMPDIPLLFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVK 125
Query: 127 DSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVF 186
            ++         V++S+H++  TPS E++ + + ++QA GADI K A       DV  + 
Sbjct: 126 ATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQALGADIPKIAVMPQSKHDVLTLL 185
Query: 187 QITVHSQV-----PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
             T+  Q      P+I + M + G+ISR+    FG   TFG ++    SAPGQ  + DL
Sbjct: 186 TATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQA--SAPGQIAVNDL 242

>pdb|2HK7|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex Aeolicus In Complex With Mercury At 2.5 Angstrom Resolution Length = 269

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 107/219 (48%), Gaps = 29/219 (13%)
Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFA 306
           +   T+++G+IG PV HS SP+  N   +  G N V++   +  +++ K F+ + +    
Sbjct: 2   INAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVK 61
Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR 366
           G + T+P KE  +   D V+  AK IGAVN +  +  +GK +GYNTD++G + +++    
Sbjct: 62  GINVTVPFKEEIIPLLDYVEDTAKEIGAVNTV--KFENGKAYGYNTDWIGFLKSLK---- 115
Query: 367 GRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGG 426
                   +   +  K  +V+                  +V + NRT ++A +LA+    
Sbjct: 116 -------SLIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPL 168
Query: 427 HALSLADLENFNPEDGM----ILANTTSIGMQPKVDETP 461
             ++       +PE+ +    ++ NTTS+G++   DE P
Sbjct: 169 EVVN-------SPEEVIDKVQVIVNTTSVGLK---DEDP 197

>pdb|2HK9|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex Aeolicus In Complex With Shikimate And Nadp+ At 2.2 Angstrom Resolution Length = 275

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 107/219 (48%), Gaps = 29/219 (13%)
Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFA 306
           +   T+++G+IG PV HS SP+  N   +  G N V++   +  +++ K F+ + +    
Sbjct: 8   INAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVK 67
Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR 366
           G + T+P KE  +   D V+  AK IGAVN +  +  +GK +GYNTD++G + +++    
Sbjct: 68  GINVTVPFKEEIIPLLDYVEDTAKEIGAVNTV--KFENGKAYGYNTDWIGFLKSLK---- 121
Query: 367 GRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGG 426
                   +   +  K  +V+                  +V + NRT ++A +LA+    
Sbjct: 122 -------SLIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPL 174
Query: 427 HALSLADLENFNPEDGM----ILANTTSIGMQPKVDETP 461
             ++       +PE+ +    ++ NTTS+G++   DE P
Sbjct: 175 EVVN-------SPEEVIDKVQVIVNTTSVGLK---DEDP 203

>pdb|1WXD|A Chain A, Crystal Structure Of Shikimate 5-dehydrogenase (aroe) From Thermus Thermophilus Hb8 Length = 263

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 97/214 (45%), Gaps = 31/214 (14%)
Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVF------VHLLVDDIAKFFQTYSSNDFAGFS 309
           F ++G PV HS SP ++  A +S+G  G +      +  L   + +         F G +
Sbjct: 4   FAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEV-----RRAFRGVN 58
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRL 369
            T+P KEAA+   D V   A+ IGAVN ++  Q +G+LFG+NTD  G + A++       
Sbjct: 59  LTLPLKEAALAHLDWVSPEAQRIGAVNTVL--QVEGRLFGFNTDAPGFLEALK------- 109
Query: 370 NVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGHAL 429
             +GG+   L G   +V+                   V + NRT  RA  LAE  G  A+
Sbjct: 110 --AGGIP--LKGPA-LVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLRAV 164
Query: 430 SLADLENFNPEDGMILANTTSIGMQPKVDETPIP 463
            L         +  +L N T +G++     +P+P
Sbjct: 165 PLE-----KAREARLLVNATRVGLE-DPSASPLP 192

>pdb|2OX1|A Chain A, Archaeal Dehydroquinase Length = 196

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 29/197 (14%)
Query: 47  ASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRL 106
           A  AD+VE+R+D       R + + ++         T R + +GG+++GDE ER++ ++ 
Sbjct: 16  AEKADVVELRIDLFDFSGARVDKEKIL---------TCRRVSDGGKFEGDERERIEKMKR 66
Query: 107 AME-LGADYIDVELQV---AREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARI 162
           A + L  DY+D+E  +   A +FN          C++I S HN+  TP   D S L   +
Sbjct: 67  AFDSLNPDYVDLESDLPDSAFDFN----------CRIIESYHNFIRTP---DYSELKGIV 113
Query: 163 QASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFG 222
           +    D+VK AT      DV  + +I  +    ++  +MGER   +R+L A  G    + 
Sbjct: 114 EGRRGDLVKIATMGKSKRDVETIVRILTNYD-DVVAFLMGERFSFTRVLAAYLGSPFIYC 172
Query: 223 TLENGIVSAPGQPTIKD 239
            +  G   APGQ ++ D
Sbjct: 173 YV--GSPKAPGQISLDD 187

>pdb|2YR1|A Chain A, Crystal Structure Of 3-Dehydroquinate Dehydratase From Geobacillus Kaustophilus Hta426 Length = 257

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 102/234 (43%), Gaps = 13/234 (5%)
Query: 26  ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK-----ESPVPT 80
           IC P++GE   K++ +  +      DL+E R D  +  + +E +             +P 
Sbjct: 22  ICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRAIDDQERVLATANGLRNIAGEIPI 81
Query: 81  LFTYRPIWEGGQ-YDGDENERVDVLRLAMELGA-DYIDVELQVAREFNDSIRGKKPEKCK 138
           LFT R   EGGQ    +E E   ++      GA D +D EL       D  R  +     
Sbjct: 82  LFTIRSEREGGQPIPLNEAEVRRLIEAICRSGAIDLVDYELAYGERIADVRRMTEECSVW 141
Query: 139 VIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQ----V 194
           ++VS H +  TP  E L   + + +  GADI K A       DV  + Q T  ++    +
Sbjct: 142 LVVSRHYFDGTPRKETLLADMRQAERYGADIAKVAVMPKSPEDVLVLLQATEEARRELAI 201
Query: 195 PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQ 248
           P+I + MG  G I+R+    FG  +TF        SAPGQ  I D+  + +  Q
Sbjct: 202 PLITMAMGGLGAITRLAGWLFGSAVTFAVGNQS--SAPGQIPIDDVRTVLSILQ 253

>pdb|1NYT|A Chain A, Shikimate Dehydrogenase Aroe Complexed With Nadp+ Length = 271

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 97/220 (44%), Gaps = 33/220 (15%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLL--VDDIAKFFQTYSSNDFAGFSCT 311
           + + + G P+ HSKSP ++ +  + +     +  +L  ++D       + S    G + T
Sbjct: 2   ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVT 61
Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE------DGL 365
           +P KE A    DE+   A   GAVN ++R + DG+L G NTD VG +S +E       GL
Sbjct: 62  VPFKEEAFARADELTERAALAGAVNTLMRLE-DGRLLGDNTDGVGLLSDLERLSFIRPGL 120
Query: 366 RGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVG 425
           R  L  +GG S  +   L  +                    V I NRT  RA ELA+   
Sbjct: 121 RILLIGAGGASRGVLLPLLSL-----------------DCAVTITNRTVSRAEELAKLFA 163
Query: 426 G----HALSLADLENFNPEDGMILANTTSIGMQPKVDETP 461
                 ALS+ +LE    +   ++ N TS G+   +   P
Sbjct: 164 HTGSIQALSMDELEGHEFD---LIINATSSGISGDIPAIP 200

>pdb|3U62|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Thermotoga Maritima Length = 253

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 96/213 (45%), Gaps = 36/213 (16%)
Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVF------VHLLVDDIAKFFQTYSSNDFAGFS 309
           F IIG PV HS SP LYNE FK  G N  +            +I +  + Y      GF+
Sbjct: 3   FCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRILEEYD-----GFN 57
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRL 369
            TIPHKE  ++  +  +  A+ I AVNC+ R    GK  GYNTD+VG + ++E       
Sbjct: 58  ATIPHKERVMRYVEPSED-AQRIKAVNCVFR----GK--GYNTDWVGVVKSLEGVEVKEP 110
Query: 370 NVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGHAL 429
            V  G   A    ++ ++                   + + NRT +RA+ L   V     
Sbjct: 111 VVVVGAGGAARAVIYALLQMGVKD-------------IWVVNRTIERAKALDFPV--KIF 155
Query: 430 SLADLENFNPEDGMILANTTSIGMQPKVDETPI 462
           SL  L+    +    L NTTS+GM  K +E P+
Sbjct: 156 SLDQLDEV-VKKAKSLFNTTSVGM--KGEELPV 185

>pdb|1SFL|A Chain A, 1.9a Crystal Structure Of Staphylococcus Aureus Type I 3- Dehydroquinase, Apo Form Length = 238

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 16/220 (7%)
Query: 34  SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK----ESPVPTLFTYRPIWE 89
           S+++ ++          D++E+R+D  +N    +  + + K    +     L TYR   +
Sbjct: 15  SIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQ 74
Query: 90  GG--QYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIR---GKKPEKCKVIVSSH 144
           GG  Q+  D    + +  LA   G D ID+E Q   +     R     +    +VI+S H
Sbjct: 75  GGYGQFTNDSYLNL-ISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHH 133
Query: 145 NYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQ-ITVHSQV---PIIGLV 200
           N++ TP +++L  +  ++Q    + VK A    +  DV  + Q ++  S      ++G+ 
Sbjct: 134 NFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGIS 193
Query: 201 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
           M + GLISR     FGG LT+G +  G   APGQ  + DL
Sbjct: 194 MSKLGLISRTAQGVFGGALTYGCI--GEPQAPGQIDVTDL 231

>pdb|3TOZ|A Chain A, 2.2 Angstrom Crystal Structure Of Shikimate 5-Dehydrogenase From Listeria Monocytogenes In Complex With Nad. Length = 315

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 102/230 (44%), Gaps = 37/230 (16%)
Query: 253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSC 310
           T++ G+I  P+ HS SP ++NEAF  +G + V++   V D  +    Q + + +  G++ 
Sbjct: 37  TELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNV 96
Query: 311 TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIED------G 364
           ++P+K    K  D++   A+ +GAVN ++    DG L G+ TD  G + A+++      G
Sbjct: 97  SMPNKTNIHKYLDKLSPAAELVGAVNTVV--NDDGVLTGHITDGTGYMRALKEAGHDIIG 154
Query: 365 LRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRT---YDRARELA 421
            +  +  +GG ++A+                           + I NR    Y  A +  
Sbjct: 155 KKMTICGAGGAATAIC----------------IQAALDGVKEISIFNRKDDFYANAEKTV 198
Query: 422 ETVG------GHALSLADLENFNPE--DGMILANTTSIGMQPKVDETPIP 463
           E +            + D E    E  + +I  N T +GM+P   ET +P
Sbjct: 199 EKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLP 248

>pdb|1SFJ|A Chain A, 2.4a Crystal Structure Of Staphylococcus Aureus Type I 3- Dehydroquinase, With 3-Dehydroquinate Bound Length = 238

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 97/203 (47%), Gaps = 16/203 (7%)
Query: 51  DLVEIRLDGLKNFNPRENIKTLIK----ESPVPTLFTYRPIWEGG--QYDGDENERVDVL 104
           D++E+R+D  +N    +  + + K    +     L TYR   +GG  Q+  D    + + 
Sbjct: 32  DVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNL-IS 90
Query: 105 RLAMELGADYIDVELQVAREFNDSIR---GKKPEKCKVIVSSHNYQYTPSVEDLSNLVAR 161
            LA   G D ID+E Q   +     R     +    +VI+S HN++ TP +++L  +  +
Sbjct: 91  DLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQFIFFK 150
Query: 162 IQASGADIVKFATTALDITDVARVFQ-ITVHSQV---PIIGLVMGERGLISRILCAKFGG 217
           +Q    + VK A    +  DV  + Q ++  S      ++G+ M + GLISR     FGG
Sbjct: 151 MQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGG 210
Query: 218 FLTFGTLENGIVSAPGQPTIKDL 240
            LT+G +  G   APGQ  + DL
Sbjct: 211 ALTYGCI--GEPQAPGQIDVTDL 231

>pdb|2EGZ|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase From Aquifex Aeolicus Vf5 Length = 219

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 107/225 (47%), Gaps = 20/225 (8%)
Query: 25  LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKN--FNPRENIKTLIKESPVPTLF 82
           LI VP+   +  +   ++ KA   GAD+VE+R+D   +   N  +     +    + T+ 
Sbjct: 2   LIAVPLDDTNFSE---NLKKAKEKGADIVELRVDQFSDTSLNYVKEKLEEVHSQGLKTIL 58
Query: 83  TYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQ----VAREFNDSIRGKKPEKCK 138
           T R   EGG+   +  E  + L       +DY D+EL     + + +N +    K    K
Sbjct: 59  TIRSPEEGGREVKNREELFEELSPL----SDYTDIELSSRGLLVKLYNITKEAGK----K 110
Query: 139 VIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIG 198
           +I+S HN++ TP    +  ++      G  I K A  A    DVAR+  I+   +   I 
Sbjct: 111 LIISYHNFELTPPNWIIREVLREGYRYGG-IPKIAVKANSYEDVARLLCISRQVEGEKIL 169
Query: 199 LVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDL 243
           + MG+ G ISR+    FG  +T+ +LE     APGQ  ++++++L
Sbjct: 170 ISMGDYGKISRLAGYVFGSVITYCSLEKAF--APGQIPLEEMVEL 212

>pdb|4FQ8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210a Mutant From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 8/136 (5%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 309
           K FG+ G P+ HSKSP+++N  F    K + F G +  +L+   +     +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 368
            T+P KE A + CD++  +A   GAVN ++    +  L GYNTD +G  +S  +   +  
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 369 LNV-SGGVSSALAGKL 383
           L + +GG + ALA +L
Sbjct: 122 LILGAGGSAKALACEL 137

>pdb|4FR5|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210s Mutant From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 8/136 (5%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 309
           K FG+ G P+ HSKSP+++N  F    K + F G +  +L+   +     +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 368
            T+P KE A + CD++  +A   GAVN ++    +  L GYNTD +G  +S  +   +  
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 369 LNV-SGGVSSALAGKL 383
           L + +GG + ALA +L
Sbjct: 122 LILGAGGSAKALACEL 137

>pdb|4FPX|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237n Mutant From Helicobacter Pylori Length = 271

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 8/136 (5%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 309
           K FG+ G P+ HSKSP+++N  F    K + F G +  +L+   +     +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 368
            T+P KE A + CD++  +A   GAVN ++    +  L GYNTD +G  +S  +   +  
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 369 LNV-SGGVSSALAGKL 383
           L + +GG + ALA +L
Sbjct: 122 LILGAGGSAKALACEL 137

>pdb|4FOO|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237k Mutant From Helicobacter Pylori Length = 271

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 8/136 (5%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 309
           K FG+ G P+ HSKSP+++N  F    K + F G +  +L+   +     +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 368
            T+P KE A + CD++  +A   GAVN ++    +  L GYNTD +G  +S  +   +  
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 369 LNV-SGGVSSALAGKL 383
           L + +GG + ALA +L
Sbjct: 122 LILGAGGSAKALACEL 137

>pdb|4FOS|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237a Mutant From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 8/136 (5%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 309
           K FG+ G P+ HSKSP+++N  F    K + F G +  +L+   +     +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 368
            T+P KE A + CD++  +A   GAVN ++    +  L GYNTD +G  +S  +   +  
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 369 LNV-SGGVSSALAGKL 383
           L + +GG + ALA +L
Sbjct: 122 LILGAGGSAKALACEL 137

>pdb|3PHG|A Chain A, Crystal Structure Of The Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori Length = 269

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 8/136 (5%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 309
           K FG+ G P+ HSKSP+++N  F    K + F G +  +L+   +     +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 368
            T+P KE A + CD++  +A   GAVN ++    +  L GYNTD +G  +S  +   +  
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 369 LNV-SGGVSSALAGKL 383
           L + +GG + ALA +L
Sbjct: 122 LILGAGGSAKALACEL 137

>pdb|4FSH|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (aroe) Clinical Variant V2356 From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 18/138 (13%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDF---- 305
           K FG+ G P+ HSKSP+++N  F    K +GF G +  +L+       +++  N+F    
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKKLGFLGHYRPILLP-----LESHIKNEFLHLG 58
Query: 306 -AGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIED 363
            +G + T+P KE A + CD++  +A    ++N ++    +  L GYNTD +G  +S    
Sbjct: 59  LSGANVTLPFKERAFQVCDKIKGIALECASINTLVLENDE--LVGYNTDALGFYLSLKHQ 116
Query: 364 GLRGRLNV-SGGVSSALA 380
             +  L + SGG + ALA
Sbjct: 117 NYQNALILGSGGSAKALA 134

>pdb|3FBT|A Chain A, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5- Dehydrogenase Fusion Protein From Clostridium Acetobutylicum Length = 282

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 31/224 (13%)
Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFA 306
           M  +T ++G+IG+ +GHS S  ++   F+ VG  G++    V  + + +   T+      
Sbjct: 1   MSLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPKEKLKESVDTFKIIKCG 60
Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG---AISAIED 363
           G + TIP+K   +K   E+   A+ IGAVN +  + S   + G+NTDY+G    +S    
Sbjct: 61  GLNVTIPYKVEVMKELYEISEKARKIGAVNTL--KFSREGISGFNTDYIGFGKMLSKFRV 118
Query: 364 GLRGRLNV---SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRAREL 420
            ++  + V   SGG + A+   L                       + +  R  ++  E+
Sbjct: 119 EIKNNICVVLGSGGAARAVLQYL----------------KDNFAKDIYVVTRNPEKTSEI 162
Query: 421 AETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPK 464
                   +S  +L N     G ++ N T  GM PK  E+P+ K
Sbjct: 163 YGEF--KVISYDELSNLK---GDVIINCTPKGMYPKEGESPVDK 201

>pdb|3T4E|A Chain A, 1.95 Angstrom Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From Salmonella Enterica Subsp. Enterica Serovar Typhimurium In Complex With Nad Length = 312

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSCT 311
           ++ G++  P+ HS SP + N+A +  G    ++   VD+   A   +   +    G   +
Sbjct: 32  ELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDNTTFASAIEGLKALKMRGTGVS 91
Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---LRGR 368
           +P+K+ A +  DE+   AK +GA+N I+    DG L GYNTD  G I AI++    +RG+
Sbjct: 92  MPNKQLACEYVDELTPAAKLVGAINTIV--NDDGYLRGYNTDGTGHIRAIKESGFDMRGK 149
Query: 369 LNV 371
             V
Sbjct: 150 TMV 152

>pdb|3L9C|A Chain A, The Crystal Structure Of Smu.777 From Streptococcus Mutans Ua159 Length = 259

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 121/251 (48%), Gaps = 32/251 (12%)
Query: 7   LVASGSKLVS--GG--MRKNPTLICVPIMGESVDKM-VVDMGKANASGADLVEIRLDGLK 61
           LV  GS + S  GG  M +    I VP+M +++++   +D+ + +++  D++E R D L 
Sbjct: 14  LVPRGSHMASMTGGQQMGRGSMKIVVPVMPQNIEEANQLDLTRIDST--DIIEWRADYLV 71
Query: 62  NFNPRENIKTLI-----KESPVPTLFTYRPIWEGGQYDGDENERVDVLR-LAMELGADYI 115
               +++I T+      K S    +FT R   EGG       + + ++R +A     DYI
Sbjct: 72  ----KDDILTVAPAIFEKFSGHEVIFTLRTEKEGGNISLSNEDYLAIIRDIAALYQPDYI 127
Query: 116 DVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATT 175
           D E    R+  + +     +   +I+S HN++ TP  E+L  + + + A    +VK A  
Sbjct: 128 DFEYFSYRDVLEEMY----DFSNLILSYHNFEETP--ENLMEVFSELTALAPRVVKIAVM 181
Query: 176 ------ALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIV 229
                  LD+ +  R F+ T++     + + M + G ISR+     G   TF +LE    
Sbjct: 182 PKNEQDVLDLMNYTRGFK-TLNPNQEYVTMSMSKLGRISRLAADLIGSSWTFASLEQE-- 238
Query: 230 SAPGQPTIKDL 240
           SAPGQ ++ D+
Sbjct: 239 SAPGQISLADM 249

>pdb|1NPD|A Chain A, X-Ray Structure Of Shikimate Dehydrogenase Complexed With Nad+ From E.Coli (Ydib) Northeast Structural Genomics Research Consortium (Nesg) Target Er24 Length = 288

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSCT 311
           ++ G+   P+ HS SP   N+A +  G    +    VD+       +   +    G   +
Sbjct: 8   ELIGLXAYPIRHSLSPEXQNKALEKAGLPFTYXAFEVDNDSFPGAIEGLKALKXRGTGVS 67
Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---LRGR 368
            P+K+ A +  DE+   AK +GA+N I+    DG L GYNTD  G I AI++    ++G+
Sbjct: 68  XPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAIKESGFDIKGK 125
Query: 369 LNV---SGGVSSALAGK 382
             V   +GG S+A+  +
Sbjct: 126 TXVLLGAGGASTAIGAQ 142

>pdb|1VI2|A Chain A, Crystal Structure Of Shikimate-5-Dehydrogenase With Nad Length = 300

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSCT 311
           ++ G+   P+ HS SP   N+A +  G    +    VD+       +   +    G   +
Sbjct: 10  ELIGLXAYPIRHSLSPEXQNKALEKAGLPFTYXAFEVDNDSFPGAIEGLKALKXRGTGVS 69
Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---LRGR 368
            P+K+ A +  DE+   AK +GA+N I+    DG L GYNTD  G I AI++    ++G+
Sbjct: 70  XPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAIKESGFDIKGK 127
Query: 369 LNV---SGGVSSALAGK 382
             V   +GG S+A+  +
Sbjct: 128 TXVLLGAGGASTAIGAQ 144

>pdb|1P74|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) From Haemophilus Influenzae Length = 272

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 20/173 (11%)
Query: 255 VFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLL--VDDIAKFFQTYSSNDFAGFSCTI 312
           ++ + G P+  SKSP++ N+          ++  L  +D   +    +      G + T 
Sbjct: 3   LYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNITS 62
Query: 313 PHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE--DGLRGRLN 370
           P KE A +  DE    AK   A N + ++  DGKL+  NTD +G ++ ++  + LR   +
Sbjct: 63  PFKERAYQLADEYSQRAKLAEACNTL-KKLDDGKLYADNTDGIGLVTDLQRLNWLRPNQH 121
Query: 371 VS-GGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAE 422
           V   G   A  G L  ++                   +V+ANRT+ + +ELAE
Sbjct: 122 VLILGAGGATKGVLLPLLQAQQ--------------NIVLANRTFSKTKELAE 160

>pdb|3O8Q|A Chain A, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae Length = 281

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 19/184 (10%)
Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVH--LLVDDIAKFFQTYSSNDFA 306
           M      + + G P+ HSKSP ++    +    + ++    + VD   +  + + +    
Sbjct: 4   MASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR 63
Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAIS---AIED 363
           G + T+P KE A +  D +   A+  GAVN  +++  DG++ G NTD  G +    A + 
Sbjct: 64  GCNVTVPFKEEAYRFADRLTERARLAGAVN-TLKKLDDGEILGDNTDGEGLVQDLLAQQV 122
Query: 364 GLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAET 423
            L+G   +  G   A  G L  ++                   + + NRT+ +A +LAE 
Sbjct: 123 LLKGATILLIGAGGAARGVLKPLLDQQPAS-------------ITVTNRTFAKAEQLAEL 169
Query: 424 VGGH 427
           V  +
Sbjct: 170 VAAY 173

>pdb|3PGJ|A Chain A, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar Eltor Str. N16961 In Complex With Shikimate Length = 302

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 19/184 (10%)
Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVH--LLVDDIAKFFQTYSSNDFA 306
           M      + + G P+ HSKSP ++    +    + ++    + VD   +  + + +    
Sbjct: 25  MASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR 84
Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAIS---AIED 363
           G + T+P KE A +  D +   A+  GAVN  +++  DG++ G NTD  G +    A + 
Sbjct: 85  GCNVTVPFKEEAYRFADRLTERARLAGAVNT-LKKLDDGEILGDNTDGEGLVQDLLAQQV 143
Query: 364 GLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAET 423
            L+G   +  G   A  G L  ++                   + + NRT+ +A +LAE 
Sbjct: 144 LLKGATILLIGAGGAARGVLKPLLDQQPAS-------------ITVTNRTFAKAEQLAEL 190
Query: 424 VGGH 427
           V  +
Sbjct: 191 VAAY 194

>pdb|3O8Q|B Chain B, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae Length = 275

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 19/177 (10%)
Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVH--LLVDDIAKFFQTYSSNDFAGFSCTIP 313
           + + G P+ HSKSP ++    +    + ++    + VD   +  + + +    G + T+P
Sbjct: 5   YAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNVTVP 64
Query: 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAIS---AIEDGLRGRLN 370
            KE A +  D +   A+  GAVN  +++  DG++ G NTD  G +    A +  L+G   
Sbjct: 65  FKEEAYRFADRLTERARLAGAVN-TLKKLDDGEILGDNTDGEGLVQDLLAQQVLLKGATI 123
Query: 371 VSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGH 427
           +  G   A  G L  ++                   + + NRT+ +A +LAE V  +
Sbjct: 124 LLIGAGGAARGVLKPLLDQQPAS-------------ITVTNRTFAKAEQLAELVAAY 167

>pdb|2OCZ|A Chain A, The Structure Of A Putative 3-dehydroquinate Dehydratase From Streptococcus Pyogenes Length = 231

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 100/231 (43%), Gaps = 28/231 (12%)
Query: 22  NPTLICVPIMGESVDK-MVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLI-----KE 75
           N   I  P+     D+   +D+ K      +L+E R D    F P++ I  +      K 
Sbjct: 2   NAXRIVAPVXPRHFDEAQAIDISKY--EDVNLIEWRAD----FLPKDEIVAVAPAIFEKF 55
Query: 76  SPVPTLFTYRPIWEGGQYDGDENERVDVLR-LAMELGADYIDVELQVAREFNDSIRGKKP 134
           +    +FT R + EGG       E VD+++ +      DYID E    +    S+  +  
Sbjct: 56  AGKEIIFTLRTVQEGGNITLSSQEYVDIIKEINAIYNPDYIDFEYFTHK----SVFQEXL 111
Query: 135 EKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATT------ALDITDVARVFQI 188
           +   +I+S HN++ TP  E+L    +        +VK A         LD+ +  R F+ 
Sbjct: 112 DFPNLILSYHNFEETP--ENLXEAFSEXTKLAPRVVKIAVXPQSEQDVLDLXNYTRGFK- 168
Query: 189 TVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKD 239
           T++ +     +  G+ G +SR      G   T+ +L++  VS PGQ T+ D
Sbjct: 169 TLNPEQEFATISXGKLGRLSRFAGDVIGSSWTYVSLDH--VSGPGQVTLND 217

>pdb|3PWZ|A Chain A, Crystal Structure Of An Ael1 Enzyme From Pseudomonas Putida Length = 272

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 85/219 (38%), Gaps = 33/219 (15%)
Query: 256 FGIIGKPVGHSKSPILY-------NEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGF 308
           + +IG+P+ H+KSP+++       N+  +     G      +DD       + S    G 
Sbjct: 5   YAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGS-----LDDFEAQVLQFRSEGGKGM 59
Query: 309 SCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---- 364
           + T P K  A +  D     A+   A N +  +  DG++   N D +G +  IE+     
Sbjct: 60  NITAPFKLRAFELADRRSERAQLARAANAL--KFEDGRIVAENFDGIGLLRDIEENLGEP 117
Query: 365 LRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETV 424
           LR R  +  G   A+ G L   +                   +VIANR   +A  L   +
Sbjct: 118 LRNRRVLLLGAGGAVRGALLPFL-------------QAGPSELVIANRDMAKALALRNEL 164
Query: 425 GGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIP 463
               L ++  E    +   I+ N TS  +    D  P+P
Sbjct: 165 DHSRLRISRYEALEGQSFDIVVNATSASL--TADLPPLP 201

>pdb|3JYO|A Chain A, Quinate Dehydrogenase From Corynebacterium Glutamicum In Complex With Nad Length = 283

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV-------DDIAKFFQTYSSND 304
           D+ + G+IG+ +  S++P ++     + G   V+  +          D+           
Sbjct: 3   DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLG 62
Query: 305 FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG 364
           F G + T P+K+A +   DEV   A  +GAVN ++   + G   G+NTD  G    +E+G
Sbjct: 63  FNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVV-IDATGHTTGHNTDVSGFGRGMEEG 121
Query: 365 L 365
           L
Sbjct: 122 L 122

>pdb|2NLO|A Chain A, Crystal Structure Of The Quinate Dehydrogenase From Corynebacterium Glutamicum Length = 302

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 9/130 (6%)
Query: 243 LYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV-------DDIAK 295
           LY F+    D+ + G+IG+ +  S++P ++     + G   V+  +          D+  
Sbjct: 14  LY-FQGAMNDSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKT 72
Query: 296 FFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYV 355
                    F G + T P+K+A +   DEV   A  +GAVN ++   + G   G+NTD  
Sbjct: 73  LLDAALYLGFNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVV-IDATGHTTGHNTDVS 131
Query: 356 GAISAIEDGL 365
           G    +E+GL
Sbjct: 132 GFGRGMEEGL 141

>pdb|1NPY|A Chain A, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607 Length = 271

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 28/194 (14%)
Query: 271 LYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAK 330
            +N  +  +G N ++      DI    +   +    G + ++P KE  +   DE+   A+
Sbjct: 23  FHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRGCAVSMPFKETCMPFLDEIHPSAQ 82
Query: 331 SIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGR-----LNVSGGVSSALAGKLFV 385
           +I +VN I+    +G L  YNTDY+  +  IE     +     ++ SGG++ A+      
Sbjct: 83  AIESVNTIV--NDNGFLRAYNTDYIAIVKLIEKYHLNKNAKVIVHGSGGMAKAVVAAF-- 138
Query: 386 VIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMIL 445
                               ++ I  R     + LA   G   ++   LEN   +   IL
Sbjct: 139 --------------KNSGFEKLKIYARNVKTGQYLAALYGYAYIN--SLEN---QQADIL 179
Query: 446 ANTTSIGMQPKVDE 459
            N TSIGM+   +E
Sbjct: 180 VNVTSIGMKGGKEE 193

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	465
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	0.0
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	2e-83
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	8e-78
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	5e-77
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	3e-76
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	7e-75
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	2e-74
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	1e-71
2egz_A	219	3-dehydroquinate dehydratase; aquifex aeolicus VF5	2e-71
1sfl_A	238	3-dehydroquinate dehydratase; 3-dehydroquinase, en	1e-70
2yr1_A	257	3-dehydroquinate dehydratase; amino acid biosynthe	2e-70
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	3e-70
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	5e-69
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	4e-68
3js3_A	258	3-dehydroquinate dehydratase; AROD, covalent react	6e-67
2ocz_A	231	3-dehydroquinate dehydratase; structural genomics,	6e-67
3o1n_A	276	3-dehydroquinate dehydratase; structural genomics,	2e-66
3l9c_A	259	3-dehydroquinate dehydratase; AROD, amino-acid bio	1e-65
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	8e-65
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	1e-61
2ox1_A	196	3-dehydroquinate dehydratase; (beta-alpha)8 barrel	4e-61
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	3e-56
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	4e-56
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	4e-56
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	1e-55
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	2e-12
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	5e-10
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	8e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	2e-06
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	3e-06
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	7e-06
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	2e-05
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	3e-05
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	3e-05
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	5e-05
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	6e-05
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	8e-05
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	8e-05
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	9e-05
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	1e-04
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	1e-04
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	1e-04
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	1e-04
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	1e-04
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	1e-04
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	2e-04
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	2e-04
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	2e-04
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	2e-04
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	2e-04
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	2e-04
4dqx_A	277	Probable oxidoreductase protein; structural genomi	3e-04
3imf_A	257	Short chain dehydrogenase; structural genomics, in	3e-04
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	3e-04
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	3e-04
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	4e-04
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	4e-04
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	4e-04
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	4e-04
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	4e-04
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	5e-04
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	5e-04
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	5e-04
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	6e-04
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	6e-04
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	7e-04
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	7e-04
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	7e-04
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	7e-04
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	7e-04
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	8e-04
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	9e-04

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* Length = 523

 Score =  604 bits (1558), Expect = 0.0
 Identities = 338/446 (75%), Positives = 388/446 (86%), Gaps = 2/446 (0%)

Query: 21  KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPT 80
           KNP+LIC P+M +S+DKMV++  KA+  GADLVEIRLD LK+FNP E++KT+IK+SP+PT
Sbjct: 2   KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61

Query: 81  LFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVI 140
           LFTYRP WEGGQY+GDENER DVLRLAMELGADYIDVELQVA EF  SI GKKP K KVI
Sbjct: 62  LFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVI 121

Query: 141 VSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLV 200
           VSSHNYQ TPSVEDL  LVARIQ +GADIVK ATTA+DI DVAR+F IT  +QVP IGLV
Sbjct: 122 VSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLV 181

Query: 201 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIG 260
           MGERGL+SRILC+KFGG+LTFGTL++  VSAPGQPTIKDLLDLYNFR++GPDTKV+GIIG
Sbjct: 182 MGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIG 241

Query: 261 KPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVK 320
           KPV HSKSPI++N+AFKSV FNGV+VHLLVD++  F Q YSS+DFAGFSCTIPHKEAA++
Sbjct: 242 KPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQ 301

Query: 321 CCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR--GRLNVSGGVSSA 378
           CCDEVD +AKSIGAVN I+RR+SDGKL GYNTD +G+ISAIEDGLR  G  +     SS 
Sbjct: 302 CCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSP 361

Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFN 438
           LA K  VVIGAGGAGKALAYGAK KGA+VVIANRTY+RA ELAE +GG ALSL DL+N++
Sbjct: 362 LASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYH 421

Query: 439 PEDGMILANTTSIGMQPKVDETPIPK 464
           PEDGM+LANTTS+GMQP V+ETPI K
Sbjct: 422 PEDGMVLANTTSMGMQPNVEETPISK 447

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* Length = 312

 Score =  259 bits (663), Expect = 2e-83
 Identities = 67/248 (27%), Positives = 110/248 (44%), Gaps = 27/248 (10%)

Query: 230 SAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLL 289
           S+      ++L    N   +    ++ G++  P+ HS SP + N+A +  G    ++   
Sbjct: 8   SSGVDLGTENLYFQSNAMDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFE 67

Query: 290 V--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKL 347
           V     A   +   +    G   ++P+K+ A +  DE+   AK +GA+N I+    DG L
Sbjct: 68  VDNTTFASAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVND--DGYL 125

Query: 348 FGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-R 406
            GYNTD  G I AI++               + GK  V++GAGGA  A+   A  +G   
Sbjct: 126 RGYNTDGTGHIRAIKESGFD-----------MRGKTMVLLGAGGAATAIGAQAAIEGIKE 174

Query: 407 VVIANRT---YDRARELAETVGGHA------LSLADLENFNP--EDGMILANTTSIGMQP 455
           + + NR    +++A   A+ V  +         LAD   F        IL N T +GM+P
Sbjct: 175 IKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKP 234

Query: 456 KVDETPIP 463
             +E+ I 
Sbjct: 235 LENESLIG 242

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 Length = 287

 Score =  243 bits (622), Expect = 8e-78
 Identities = 84/225 (37%), Positives = 119/225 (52%), Gaps = 24/225 (10%)

Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFA 306
           +   TKV G+IG PV HS SPI++N AFK  G N V+V   V  +++        +    
Sbjct: 7   INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIV 66

Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR 366
           GF+ TIPHK   +K  DE+D  A+ IGAVN I     DGK  GYNTD +GA  A+E+ + 
Sbjct: 67  GFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTIKIE--DGKAIGYNTDGIGARMALEEEI- 123

Query: 367 GRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVG- 425
                       +  K  V+ GAGGA +A+A+   AK   ++IANRT ++A  LA+ +  
Sbjct: 124 ----------GRVKDKNIVIYGAGGAARAVAFEL-AKDNNIIIANRTVEKAEALAKEIAE 172

Query: 426 ------GHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPK 464
                 G  +  + L+  + +   I+ N T IGM P +D  PI K
Sbjct: 173 KLNKKFGEEVKFSGLDV-DLDGVDIIINATPIGMYPNIDVEPIVK 216

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* Length = 315

 Score =  242 bits (619), Expect = 5e-77
 Identities = 63/252 (25%), Positives = 109/252 (43%), Gaps = 28/252 (11%)

Query: 227 GIVSAPGQPTIKDLLDLYNFRQM-GPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVF 285
           G+         +         +     T++ G+I  P+ HS SP ++NEAF  +G + V+
Sbjct: 10  GVDLGTENLYFQSNAMTNKITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVY 69

Query: 286 VHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQS 343
           +   V   ++    Q + + +  G++ ++P+K    K  D++   A+ +GAVN ++    
Sbjct: 70  LAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVND-- 127

Query: 344 DGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAK 403
           DG L G+ TD  G + A+++               + GK   + GAGGA  A+   A   
Sbjct: 128 DGVLTGHITDGTGYMRALKEAGHD-----------IIGKKMTICGAGGAATAICIQAALD 176

Query: 404 GA-RVVIANRT---YDRARELAETVGGH------ALSLADLENFNPE--DGMILANTTSI 451
           G   + I NR    Y  A +  E +            + D E    E  + +I  N T +
Sbjct: 177 GVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGV 236

Query: 452 GMQPKVDETPIP 463
           GM+P   ET +P
Sbjct: 237 GMKPFEGETLLP 248

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} Length = 297

 Score =  239 bits (612), Expect = 3e-76
 Identities = 77/225 (34%), Positives = 112/225 (49%), Gaps = 17/225 (7%)

Query: 245 NFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSS 302
           N    G   KV+G+IG PV HS SP+++N+AF  +G    +    V    +        +
Sbjct: 15  NLYFQGHMEKVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRA 74

Query: 303 NDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE 362
              AG + TIPHK A +   DEVD  A+ IGAVN II    DG+L GYNTD +G + A+E
Sbjct: 75  LGIAGVNVTIPHKLAVIPFLDEVDEHARRIGAVNTIINN--DGRLVGYNTDGLGYVQALE 132

Query: 363 DGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELA 421
           + +             L GK  +VIGAGG  + + +   +  A R+ +ANRT ++A  L 
Sbjct: 133 EEMNI----------TLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLV 182

Query: 422 ETVGGHALSLADLENFN--PEDGMILANTTSIGMQPKVDETPIPK 464
                   +   L        +  I+ NTTS+GM P+V+  P+  
Sbjct: 183 REGDERRSAYFSLAEAETRLAEYDIIINTTSVGMHPRVEVQPLSL 227

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A Length = 275

 Score =  235 bits (602), Expect = 7e-75
 Identities = 62/224 (27%), Positives = 116/224 (51%), Gaps = 19/224 (8%)

Query: 243 LYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTY 300
            ++   +   T+++G+IG PV HS SP+  N   +  G N V++   +  +++ K F+ +
Sbjct: 2   HHHHHMINAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGF 61

Query: 301 SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISA 360
            +    G + T+P KE  +   D V+  AK IGAVN +     +GK +GYNTD++G + +
Sbjct: 62  KALKVKGINVTVPFKEEIIPLLDYVEDTAKEIGAVNTVKFE--NGKAYGYNTDWIGFLKS 119

Query: 361 IEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRAREL 420
           ++  +             +  K  +V+GAGGA +A+ Y    +GA+V + NRT ++A +L
Sbjct: 120 LKSLIPE-----------VKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKL 168

Query: 421 AETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPK 464
           A+      ++  +      +   ++ NTTS+G++ + D      
Sbjct: 169 AQKFPLEVVNSPEEV---IDKVQVIVNTTSVGLKDE-DPEIFNY 208

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 Length = 271

 Score =  234 bits (599), Expect = 2e-74
 Identities = 50/217 (23%), Positives = 89/217 (41%), Gaps = 23/217 (10%)

Query: 249 MGPDTKV-FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAG 307
           +  DT++   + G+P   +     +N  +  +G N ++      DI    +   +    G
Sbjct: 2   INKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRG 59

Query: 308 FSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRG 367
            + ++P KE  +   DE+   A++I +VN I+    +G L  YNTDY+  +  IE     
Sbjct: 60  CAVSMPFKETCMPFLDEIHPSAQAIESVNTIVND--NGFLRAYNTDYIAIVKLIEKYHLN 117

Query: 368 RLNVSGGVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTYDRARELAETVGG 426
           +                +V G+GG  KA+      +   ++ I  R     + LA   G 
Sbjct: 118 K------------NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG- 164

Query: 427 HALSLADLENFNPEDGMILANTTSIGMQPKVDETPIP 463
                A + +   +   IL N TSIGM+   +E  + 
Sbjct: 165 ----YAYINSLENQQADILVNVTSIGMKGGKEEMDLA 197

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} Length = 282

 Score =  227 bits (580), Expect = 1e-71
 Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 21/219 (9%)

Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFA 306
           M  +T ++G+IG+ +GHS S  ++   F+ VG  G++    V  + + +   T+      
Sbjct: 1   MSLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPKEKLKESVDTFKIIKCG 60

Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR 366
           G + TIP+K   +K   E+   A+ IGAVN +        + G+NTDY+G    +     
Sbjct: 61  GLNVTIPYKVEVMKELYEISEKARKIGAVNTLKFS--REGISGFNTDYIGFGKMLSK--- 115

Query: 367 GRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANRTYDRARELAETVG 425
               V       +   + VV+G+GGA +A+    K   A+ + +  R  ++  E+     
Sbjct: 116 --FRVE------IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEF- 166

Query: 426 GHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPK 464
              +S  +L N     G ++ N T  GM PK  E+P+ K
Sbjct: 167 -KVISYDELSNL---KGDVIINCTPKGMYPKEGESPVDK 201

>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TLA; 1.75A {Aquifex aeolicus} PDB: 2ysw_A Length = 219

 Score =  224 bits (572), Expect = 2e-71
 Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 12/223 (5%)

Query: 25  LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTL--IKESPVPTLF 82
           LI VP+   +  + +    KA   GAD+VE+R+D   + +     + L  +    + T+ 
Sbjct: 2   LIAVPLDDTNFSENLK---KAKEKGADIVELRVDQFSDTSLNYVKEKLEEVHSQGLKTIL 58

Query: 83  TYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVS 142
           T R   EGG+   +  E  +     +   +DY D+EL             K    K+I+S
Sbjct: 59  TIRSPEEGGREVKNREELFE----ELSPLSDYTDIELSSRGLLVKLYNITKEAGKKLIIS 114

Query: 143 SHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMG 202
            HN++ TP    +  ++      G  I K A  A    DVAR+  I+   +   I + MG
Sbjct: 115 YHNFELTPPNWIIREVLREGYRYG-GIPKIAVKANSYEDVARLLCISRQVEGEKILISMG 173

Query: 203 ERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
           + G ISR+    FG  +T+ +LE     APGQ  ++++++L  
Sbjct: 174 DYGKISRLAGYVFGSVITYCSLEKA--FAPGQIPLEEMVELRK 214

>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A* Length = 238

 Score =  223 bits (569), Expect = 1e-70
 Identities = 58/240 (24%), Positives = 103/240 (42%), Gaps = 17/240 (7%)

Query: 19  MRKNPTLICVPIMGE-SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK--- 74
           M      +   I  + S+++ ++          D++E+R+D  +N    +  + + K   
Sbjct: 1   MTH--VEVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKV 58

Query: 75  -ESPVPTLFTYRPIWEGGQYDGDENERVDVL-RLAMELGADYIDVELQVAREFNDS---I 129
            +     L TYR   +GG      +  ++++  LA   G D ID+E Q   +       I
Sbjct: 59  MQDSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRII 118

Query: 130 RGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQIT 189
              +    +VI+S HN++ TP +++L  +  ++Q    + VK A    +  DV  + Q  
Sbjct: 119 THLQQYNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAM 178

Query: 190 V----HSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
                     ++G+ M + GLISR     FGG LT+G +      APGQ  + DL     
Sbjct: 179 STFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGE--PQAPGQIDVTDLKAQVT 236

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus} Length = 257

 Score =  222 bits (568), Expect = 2e-70
 Identities = 67/239 (28%), Positives = 102/239 (42%), Gaps = 13/239 (5%)

Query: 24  TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-----SPV 78
             IC P++GE   K++ +  +      DL+E R D  +  + +E +             +
Sbjct: 20  PCICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRAIDDQERVLATANGLRNIAGEI 79

Query: 79  PTLFTYRPIWEGGQY-DGDENERVDVLRLAMELGA-DYIDVELQVAREFNDSIRGKKPEK 136
           P LFT R   EGGQ    +E E   ++      GA D +D EL       D  R  +   
Sbjct: 80  PILFTIRSEREGGQPIPLNEAEVRRLIEAICRSGAIDLVDYELAYGERIADVRRMTEECS 139

Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQ--- 193
             ++VS H +  TP  E L   + + +  GADI K A       DV  + Q T  ++   
Sbjct: 140 VWLVVSRHYFDGTPRKETLLADMRQAERYGADIAKVAVMPKSPEDVLVLLQATEEARREL 199

Query: 194 -VPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGP 251
            +P+I + MG  G I+R+    FG  +TF        SAPGQ  I D+  + +  Q   
Sbjct: 200 AIPLITMAMGGLGAITRLAGWLFGSAVTFAVGNQ--SSAPGQIPIDDVRTVLSILQTYS 256

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* Length = 263

 Score =  223 bits (570), Expect = 3e-70
 Identities = 68/212 (32%), Positives = 105/212 (49%), Gaps = 23/212 (10%)

Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCT 311
             F ++G PV HS SP ++  A +S+G  G +       + +    +      F G + T
Sbjct: 2   LRFAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRRA-FRGVNLT 60

Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV 371
           +P KEAA+   D V   A+ IGAVN +++   +G+LFG+NTD  G + A++ G       
Sbjct: 61  LPLKEAALAHLDWVSPEAQRIGAVNTVLQV--EGRLFGFNTDAPGFLEALKAGG------ 112

Query: 372 SGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL 431
                  L G   +V+GAGGAG+A+A+  +  G  V + NRT  RA  LAE  G  A+ L
Sbjct: 113 -----IPLKGPA-LVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLRAVPL 166

Query: 432 ADLENFNPEDGMILANTTSIGMQPKVDETPIP 463
                       +L N T +G++     +P+P
Sbjct: 167 EKAREAR-----LLVNATRVGLEDP-SASPLP 192

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A Length = 283

 Score =  220 bits (563), Expect = 5e-69
 Identities = 54/226 (23%), Positives = 89/226 (39%), Gaps = 27/226 (11%)

Query: 252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV-------DDIAKFFQTYSSND 304
           D+ + G+IG+ +  S++P ++     + G   V+  +          D+           
Sbjct: 3   DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLG 62

Query: 305 FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG 364
           F G + T P+K+A +   DEV   A  +GAVN ++     G   G+NTD  G    +E+G
Sbjct: 63  FNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEG 121

Query: 365 LRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAET 423
           L                   V +GAGG G A+AY     G  ++ +A+    RA+ LA+ 
Sbjct: 122 LPN-----------AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADV 170

Query: 424 VGGH----ALSLADLENFN--PEDGMILANTTSIGMQPKVDETPIP 463
           +       A+   D             + N T +GM      T   
Sbjct: 171 INNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAH-PGTAFD 215

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* Length = 269

 Score =  217 bits (555), Expect = 4e-68
 Identities = 55/217 (25%), Positives = 100/217 (46%), Gaps = 28/217 (12%)

Query: 253 TKVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGF 308
            K FG+ G P+ HSKSP+++N  F    K + F G +  +L+   +     +     +G 
Sbjct: 3   LKSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGA 62

Query: 309 SCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGR 368
           + T+P KE A + CD++  +A   GAVN ++    + +L GYNTD +G   +++      
Sbjct: 63  NVTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQ----- 115

Query: 369 LNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA 428
                        +  +++GAGG+ KALA   K +G +V + NR+     +  + +G   
Sbjct: 116 ----------KNYQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGL-DFFQRLGCDC 164

Query: 429 LSLADLENFNPEDGMILANTTSIGMQPKVD-ETPIPK 464
                   F+     ++ N TS  +  ++     + K
Sbjct: 165 FMEPPKSAFD-----LIINATSASLHNELPLNKEVLK 196

>3js3_A 3-dehydroquinate dehydratase; AROD, covalent reaction intermediate, amino-acid biosynthesis, aromatic amino acid biosynthesis, lyase; HET: DHS; 2.20A {Clostridium difficile} Length = 258

 Score =  214 bits (546), Expect = 6e-67
 Identities = 71/235 (30%), Positives = 122/235 (51%), Gaps = 14/235 (5%)

Query: 24  TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-----SPV 78
             ICVPI+G++   ++ +  +   +  D++E R+D  +N    + +K ++ E       +
Sbjct: 20  PKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDI 79

Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDSIRGK-KPEK 136
           P LFT+R + EGG+     +    + +     G  D IDVEL +  E  D +      ++
Sbjct: 80  PLLFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKE 139

Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQIT-----VH 191
            KVI+S+H++  TP  E++ + + R+Q  GAD+ K A    +  DV  + + T     ++
Sbjct: 140 VKVIISNHDFNKTPKKEEIVSRLCRMQELGADLPKIAVMPQNEKDVLVLLEATNEMFKIY 199

Query: 192 SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246
           +  PII + M   G+ISR+    FG  LTFG  ++  VSAPGQ + K+L  + N 
Sbjct: 200 ADRPIITMSMSGMGVISRLCGEIFGSALTFGAAKS--VSAPGQISFKELNSVLNL 252

>2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus pyogenes, dehydroshikimate, PSI-2, protein ST initiative; HET: MSE; 1.85A {Streptococcus pyogenes serotype M1} Length = 231

 Score =  213 bits (543), Expect = 6e-67
 Identities = 54/237 (22%), Positives = 95/237 (40%), Gaps = 16/237 (6%)

Query: 22  NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-SPVPT 80
           N   I  P+M    D+    +  +     +L+E R D L           + ++ +    
Sbjct: 2   NAMRIVAPVMPRHFDEAQ-AIDISKYEDVNLIEWRADFLPKDEIVAVAPAIFEKFAGKEI 60

Query: 81  LFTYRPIWEGGQYDGDENERVDVL-RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKV 139
           +FT R + EGG       E VD++  +      DYID E    +     +     +   +
Sbjct: 61  IFTLRTVQEGGNITLSSQEYVDIIKEINAIYNPDYIDFEYFTHKSVFQEML----DFPNL 116

Query: 140 IVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQIT-----VHSQV 194
           I+S HN++ TP  E+L    + +      +VK A       DV  +   T     ++ + 
Sbjct: 117 ILSYHNFEETP--ENLMEAFSEMTKLAPRVVKIAVMPQSEQDVLDLMNYTRGFKTLNPEQ 174

Query: 195 PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGP 251
               + MG+ G +SR      G   T+ +L++  VS PGQ T+ D+  +    +M  
Sbjct: 175 EFATISMGKLGRLSRFAGDVIGSSWTYVSLDH--VSGPGQVTLNDMKRIIEVLEMDI 229

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 3nnt_A* 3oex_A 3m7w_A 1gqn_A 1l9w_A* 1qfe_A* Length = 276

 Score =  213 bits (543), Expect = 2e-66
 Identities = 64/237 (27%), Positives = 111/237 (46%), Gaps = 14/237 (5%)

Query: 21  KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE----- 75
           +    I V +MG+++  +  +      +  D++E R+D   N    E++           
Sbjct: 37  EGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREII 96

Query: 76  SPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDS-IRGKK 133
           +  P LFT+R   EGG+      + +D+ R A++ G  D ID+EL    +   + +    
Sbjct: 97  TDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAH 156

Query: 134 PEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITV--- 190
                VI+S+H++  TP+ E++   + ++Q  GADI K A       DV  +   TV   
Sbjct: 157 QHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQ 216

Query: 191 --HSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
             ++  PII + M + G+ISR+    FG   TFG ++    SAPG  ++ DL  +  
Sbjct: 217 ERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGAISVADLRTVLT 271

>3l9c_A 3-dehydroquinate dehydratase; AROD, amino-acid biosynthesis, aromatic amino acid biosynthe schiff base, lyase; 1.60A {Streptococcus mutans} Length = 259

 Score =  210 bits (536), Expect = 1e-65
 Identities = 56/234 (23%), Positives = 102/234 (43%), Gaps = 16/234 (6%)

Query: 19  MRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-SP 77
           M +    I VP+M +++++    +        D++E R D L   +       + ++ S 
Sbjct: 30  MGRGSMKIVVPVMPQNIEEAN-QLDLTRIDSTDIIEWRADYLVKDDILTVAPAIFEKFSG 88

Query: 78  VPTLFTYRPIWEGGQYDGDENERVDVLR-LAMELGADYIDVELQVAREFNDSIRGKKPEK 136
              +FT R   EGG       + + ++R +A     DYID E    R+  + +     + 
Sbjct: 89  HEVIFTLRTEKEGGNISLSNEDYLAIIRDIAALYQPDYIDFEYFSYRDVLEEMY----DF 144

Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQIT-----VH 191
             +I+S HN++ TP  E+L  + + + A    +VK A    +  DV  +   T     ++
Sbjct: 145 SNLILSYHNFEETP--ENLMEVFSELTALAPRVVKIAVMPKNEQDVLDLMNYTRGFKTLN 202

Query: 192 SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
                + + M + G ISR+     G   TF +LE    SAPGQ ++ D+  +  
Sbjct: 203 PNQEYVTMSMSKLGRISRLAADLIGSSWTFASLEQE--SAPGQISLADMRKIKE 254

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* Length = 277

 Score =  209 bits (534), Expect = 8e-65
 Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 20/211 (9%)

Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIP 313
           F +IG P+ HS SP++++  F+S+     +  + V  +      +  S     GF+ TIP
Sbjct: 3   FAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIP 62

Query: 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSG 373
           HKE  +   D+++  AKS+GAVN ++ +  DGK  GYNTD +G ++ ++    G      
Sbjct: 63  HKERIIPYLDDINEQAKSVGAVNTVLVK--DGKWIGYNTDGIGYVNGLKQIYEG------ 114

Query: 374 GVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTYDRARELAETVGGHALSLA 432
                +     +++GAGGA K +A    K     + +ANRT  R    +  +    ++L+
Sbjct: 115 -----IEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNIN--KINLS 167

Query: 433 DLENFNPEDGMILANTTSIGMQPKVDETPIP 463
             E+    +  I+ NTT  GM     ++ I 
Sbjct: 168 HAESHLD-EFDIIINTTPAGMNGN-TDSVIS 196

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} Length = 253

 Score =  200 bits (511), Expect = 1e-61
 Identities = 69/211 (32%), Positives = 101/211 (47%), Gaps = 30/211 (14%)

Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIP 313
           F IIG PV HS SP LYNE FK  G N  +    +  +      +     ++ GF+ TIP
Sbjct: 3   FCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRI-LEEYDGFNATIP 61

Query: 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSG 373
           HKE  ++  +  +  A+ I AVNC+ R +      GYNTD+VG + ++E           
Sbjct: 62  HKERVMRYVEPSED-AQRIKAVNCVFRGK------GYNTDWVGVVKSLEG---------- 104

Query: 374 GVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTYDRARELAETVGGHALSLA 432
                   +  VV+GAGGA +A+ Y   +     + + NRT +RA+ L   V     SL 
Sbjct: 105 ----VEVKEPVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVK--IFSLD 158

Query: 433 DLENFNPEDGMILANTTSIGMQPKVDETPIP 463
            L+         L NTTS+GM+   +E P+ 
Sbjct: 159 QLDEVVK-KAKSLFNTTSVGMKG--EELPVS 186

>2ox1_A 3-dehydroquinate dehydratase; (beta-alpha)8 barrel, lyase; 2.33A {Archaeoglobus fulgidus} Length = 196

 Score =  197 bits (501), Expect = 4e-61
 Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 31/221 (14%)

Query: 26  ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYR 85
           +   +      ++        A  AD+VE+R+D       R +            + T R
Sbjct: 3   LVATLSSPEELEL--------AEKADVVELRIDLFDFSGARVDK---------EKILTCR 45

Query: 86  PIWEGGQYDGDENERVDVLRLAME-LGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSH 144
            + +GG+++GDE ER++ ++ A + L  DY+D+E  +     D         C++I S H
Sbjct: 46  RVSDGGKFEGDERERIEKMKRAFDSLNPDYVDLESDLPDSAFDF-------NCRIIESYH 98

Query: 145 NYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGER 204
           N+  TP   +L      ++    D+VK AT      DV  + +I  +    ++  +MGER
Sbjct: 99  NFIRTPDYSEL---KGIVEGRRGDLVKIATMGKSKRDVETIVRILTNYD-DVVAFLMGER 154

Query: 205 GLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
              +R+L A  G    +  + +    APGQ ++ D  ++ +
Sbjct: 155 FSFTRVLAAYLGSPFIYCYVGS--PKAPGQISLDDAREIIS 193

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} Length = 272

 Score =  186 bits (476), Expect = 3e-56
 Identities = 50/214 (23%), Positives = 89/214 (41%), Gaps = 17/214 (7%)

Query: 253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSC 310
           +  + +IG+P+ H+KSP+++    ++      +  +    DD       + S    G + 
Sbjct: 2   SDRYAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGSLDDFEAQVLQFRSEGGKGMNI 61

Query: 311 TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLN 370
           T P K  A +  D     A+   A N +     DG++   N D +G +  IE+     L 
Sbjct: 62  TAPFKLRAFELADRRSERAQLARAANALKFE--DGRIVAENFDGIGLLRDIEE----NLG 115

Query: 371 VSGGVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTYDRARELAETVGGHAL 429
                   L  +  +++GAGGA +       +A  + +VIANR   +A  L   +    L
Sbjct: 116 EP------LRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRL 169

Query: 430 SLADLENFNPEDGMILANTTSIGMQPKVDETPIP 463
            ++  E    +   I+ N TS  +    D  P+P
Sbjct: 170 RISRYEALEGQSFDIVVNATSASLTA--DLPPLP 201

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* Length = 281

 Score =  186 bits (476), Expect = 4e-56
 Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 19/220 (8%)

Query: 248 QMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDF 305
            M      + + G P+ HSKSP ++    +    + ++    V  D   +  + + +   
Sbjct: 3   AMASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGG 62

Query: 306 AGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGL 365
            G + T+P KE A +  D +   A+  GAVN + +   DG++ G NTD  G +  +    
Sbjct: 63  RGCNVTVPFKEEAYRFADRLTERARLAGAVNTLKKLD-DGEILGDNTDGEGLVQDLL--- 118

Query: 366 RGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTYDRARELAETV 424
                V       L G   ++IGAGGA + +       + A + + NRT+ +A +LAE V
Sbjct: 119 --AQQVL------LKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELV 170

Query: 425 GGHA-LSLADLENFNPEDGMILANTTSIGMQPKVDETPIP 463
             +  +     E       +I+ N+TS  +    +   I 
Sbjct: 171 AAYGEVKAQAFEQLKQSYDVII-NSTSASLDG--ELPAID 207

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 Length = 271

 Score =  186 bits (475), Expect = 4e-56
 Identities = 64/214 (29%), Positives = 100/214 (46%), Gaps = 21/214 (9%)

Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCT 311
           + + + G P+ HSKSP ++ +  + +     +  +L   +D       + S    G + T
Sbjct: 2   ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVT 61

Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV 371
           +P KE A    DE+   A   GAVN ++R + DG+L G NTD VG +S +E     RL+ 
Sbjct: 62  VPFKEEAFARADELTERAALAGAVNTLMRLE-DGRLLGDNTDGVGLLSDLE-----RLSF 115

Query: 372 SGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG----H 427
                    G   ++IGAGGA + +     +    V I NRT  RA ELA+         
Sbjct: 116 I------RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQ 169

Query: 428 ALSLADLENFNPEDGMILANTTSIGMQPKVDETP 461
           ALS+ +LE     +  ++ N TS G+   +   P
Sbjct: 170 ALSMDELEG---HEFDLIINATSSGISGDIPAIP 200

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* Length = 272

 Score =  185 bits (471), Expect = 1e-55
 Identities = 51/213 (23%), Positives = 92/213 (43%), Gaps = 17/213 (7%)

Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCT 311
            ++ + G P+  SKSP++ N+          ++  L   D   +    +      G + T
Sbjct: 2   DLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNIT 61

Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV 371
            P KE A +  DE    AK   A N + +   DGKL+  NTD +G ++ ++     RLN 
Sbjct: 62  SPFKERAYQLADEYSQRAKLAEACNTLKKLD-DGKLYADNTDGIGLVTDLQ-----RLNW 115

Query: 372 SGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA-LS 430
                     +  +++GAGGA K +          +V+ANRT+ + +ELAE    +  + 
Sbjct: 116 L------RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQ 169

Query: 431 LADLENFNPEDGMILANTTSIGMQPKVDETPIP 463
              +++   +   ++ N TS G+        + 
Sbjct: 170 AVSMDSIPLQTYDLVINATSAGLSG--GTASVD 200

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} Length = 144

 Score = 63.7 bits (156), Expect = 2e-12
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 9/73 (12%)

Query: 371 VSGGVSSA---LAGKLF----VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET 423
           VS  + S    +  K      +++G G     +A        +V +A R  D  R  AE 
Sbjct: 6   VS--IPSIVYDIVRKNGGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEK 63

Query: 424 VGGHALSLADLEN 436
                + + D+++
Sbjct: 64  YEYEYVLINDIDS 76

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 Length = 404

 Score = 60.3 bits (147), Expect = 5e-10
 Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 14/78 (17%)

Query: 371 VSGGVSSA---LAGKLF--------VVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRAR 418
           VS  + SA   LA +          +V+GAG  GK +A     +G   V++ANRTY+RA 
Sbjct: 148 VS--IGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAV 205

Query: 419 ELAETVGGHALSLADLEN 436
           ELA  +GG A+   +L +
Sbjct: 206 ELARDLGGEAVRFDELVD 223

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} Length = 235

 Score = 49.1 bits (118), Expect = 8e-07
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
           ++    +V GAG G G+AL  G   +G +V +  R Y R ++    +G   + + 
Sbjct: 1   MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIV 55

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 9e-07
 Identities = 80/524 (15%), Positives = 155/524 (29%), Gaps = 162/524 (30%)

Query: 3   SPNLLV----ASG-SKLVSGGMRKNPTLICVPIMGESVDKMV-VDMGKANASGADLVEI- 55
           + N+L+     SG + +             +        K+  +++   N S   ++E+ 
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD------FKIFWLNLKNCN-SPETVLEML 202

Query: 56  -----RLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMEL 110
                ++D   N+  R +  + IK          R + +   Y       + VL      
Sbjct: 203 QKLLYQID--PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY----ENCLLVLL----- 251

Query: 111 GADYIDV-ELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADI 169
                +V   +    FN  +       CK+++++   Q T                    
Sbjct: 252 -----NVQNAKAWNAFN--LS------CKILLTTRFKQVT-------------------- 278

Query: 170 VKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIV 229
                   D    A    I++        L   E     + L  K+        L+    
Sbjct: 279 --------DFLSAATTTHISLDHHSM--TLTPDE----VKSLLLKY--------LDCRPQ 316

Query: 230 SAPGQ-----P--------TIKDLLDLY-NFRQMGPDTKVFGIIGKPVGHSKSPILYNEA 275
             P +     P        +I+D L  + N++ +  D K+  II   +   + P  Y + 
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD-KLTTIIESSLNVLE-PAEYRKM 374

Query: 276 FKSVGFNGVF---VH----LL-----------VDDIAKFFQTYS--SNDFAGFSCTIP-- 313
           F  +    VF    H    LL           V  +      YS         + +IP  
Sbjct: 375 FDRL---SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431

Query: 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDG----KLFGYNTDYVGA-ISAIEDGLRGR 368
           + E  VK  +E       +   N      SD      L  Y   ++G  +  IE   R  
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER-- 489

Query: 369 LNVSGGVSSALAGKLFV---VIGAGGAGKALAYGAKAKGARVVIAN-----RTYDRAREL 420
                     L   +F+    +      K + + + A  A   I N     + Y     +
Sbjct: 490 --------MTLFRMVFLDFRFLEQ----K-IRHDSTAWNASGSILNTLQQLKFYK--PYI 534

Query: 421 AETVGGHALSLADLENF--NPEDGMILANTTSI---GMQPKVDE 459
            +    +   +  + +F    E+ +I +  T +    +  + + 
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 7e-04
 Identities = 33/227 (14%), Positives = 66/227 (29%), Gaps = 46/227 (20%)

Query: 237 IKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKF 296
            KD+ D+   + +    ++  II      S +  L+     S     V          KF
Sbjct: 35  CKDVQDM--PKSILSKEEIDHIIMSKDAVSGTLRLF-WTLLSKQEEMV---------QKF 82

Query: 297 FQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFG-YNTDYV 355
            +     ++  F  +    E              +   +    R  +D ++F  YN   +
Sbjct: 83  VEEVLRINY-KFLMSPIKTEQ-------RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 356 GAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGK-ALAYGAKAKGARVVIANRTY 414
                +   L   L  +  V         ++ G  G+GK  +A         V     +Y
Sbjct: 135 QPYLKLRQALL-ELRPAKNV---------LIDGVLGSGKTWVA-------LDVC---LSY 174

Query: 415 DRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETP 461
               ++   +    L+L      +PE  + +       + P      
Sbjct: 175 KVQCKMDFKI--FWLNLK--NCNSPETVLEMLQKLLYQIDPNWTSRS 217

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} Length = 291

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH----ALSLAD 433
            A +  V+ GA  G G   A     +GA V++A R   +    A T+ G      L L D
Sbjct: 14  FAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQD 73

Query: 434 LE 435
           L 
Sbjct: 74  LS 75

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLEN 436
           + G    V+G G  G ++A    A GA+V +  R           +G     ++    
Sbjct: 153 IHGANVAVLGLGRVGMSVARKFAALGAKVKVGARES-DLLARIAEMGMEPFHISKAAQ 209

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} Length = 272

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
           S    K+ +V GAG G G+A+A      G  V +A R  D  +E A  +G  AL + 
Sbjct: 24  SKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVP 80

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 Length = 276

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMI 444
             +G G   +      K +     I +R+ DRAR LAE  GG A +L           + 
Sbjct: 6   NFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKH--PELNGVVF 63

Query: 445 LA 446
           + 
Sbjct: 64  VI 65

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* Length = 244

 Score = 44.4 bits (106), Expect = 3e-05
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADL 434
           LAG+  +V GAG G G+       A GARVV  +RT      L     G      DL
Sbjct: 5   LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDL 61

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} Length = 300

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLEN 436
           + G    V+G G  G  +A    A GA V +  R+      + E +G       +L+ 
Sbjct: 155 IHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITE-MGLVPFHTDELKE 211

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 Length = 244

 Score = 43.6 bits (104), Expect = 5e-05
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADL 434
            +G   +V GAG G G+       A GA+VV   RT      LA+   G      DL
Sbjct: 5   FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDL 61

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* Length = 215

 Score = 43.0 bits (101), Expect = 6e-05
 Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 386 VIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLAD 433
           ++G+G   ++LA      G +VV+ +R   R   L  +         +
Sbjct: 33  ILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPS-AAQVTFQEE 79

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} Length = 260

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSLA 432
           + G++ VV GA  G G+ +A      GA V I  R  D  R +A+     GG  + + 
Sbjct: 3   MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVV 60

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} Length = 261

 Score = 43.3 bits (103), Expect = 8e-05
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 373 GGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL 431
           G  S +L GK+ ++ GAG G G+ +A      GA+VVI +R    A  +A  +G  AL++
Sbjct: 1   GPGSMSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAV 60

Query: 432 A 432
           A
Sbjct: 61  A 61

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Length = 266

 Score = 43.2 bits (101), Expect = 9e-05
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 385 VVIGAGGAGKALAYGAKAKGARVV-IANRTYDRARELAETVGG-HALSLADL 434
           V+IGAG     LA     KG R+V + +RT + ARELA+ V   +   LA++
Sbjct: 14  VLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEV 65

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A Length = 259

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
           L GK  ++ G+  G G+A A     +GA V IA+   +RAR+ A  +G  A ++ 
Sbjct: 6   LEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQ 60

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Length = 252

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSL 431
           S         VIGAG   G  +A    A+G  V    R  ++   L   +   GG  ++ 
Sbjct: 2   SLTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVAR 61

Query: 432 A 432
           +
Sbjct: 62  S 62

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} Length = 277

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
           LAGK+ +V GAG G G A+A     +G  V+ A+   D A   A  +G  A +  
Sbjct: 27  LAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACR 81

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} Length = 201

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 12/47 (25%), Positives = 16/47 (34%)

Query: 386 VIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
           + G G  GK+L       G  VV  +R    +  L         S A
Sbjct: 24  IFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVLCYSEA 70

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} Length = 264

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 372 SGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGH 427
            G +   L  K+ V+ G G   G  LA     +GA +V+A RT +R  ++A+ V   G  
Sbjct: 2   PGSMGGLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRR 61

Query: 428 ALSLA 432
           ALS+ 
Sbjct: 62  ALSVG 66

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} Length = 245

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 12/49 (24%), Positives = 16/49 (32%)

Query: 386 VIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADL 434
           V+G G  G+ +A      G  V I  R        AE     A   +  
Sbjct: 24  VLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQW 72

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* Length = 302

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDR----ARELAETVGGHALSLA 432
             GK+  + G G G GK +     + GA+ VIA+R  D     A +++   G    ++ 
Sbjct: 24  FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQ 82

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} Length = 346

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 12/81 (14%)

Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---------- 424
           +  LAG    + GA  G GKA+A  A   GA +VIA +T     +L  T+          
Sbjct: 40  TGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAV 99

Query: 425 GGHALSL-ADLENFNPEDGMI 444
           GG AL    D+ +       +
Sbjct: 100 GGKALPCIVDVRDEQQISAAV 120

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} Length = 266

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDR----ARELAETVGGHALSLA 432
           L GK  ++ GA  G G  +A    A GAR+V++ R         R L E  G    ++A
Sbjct: 18  LDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVA 76

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} Length = 271

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 373 GGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL 431
           G +++ L  K+ ++ GA  G G   +      GARVV+A+         A +VG  A+  
Sbjct: 3   GSMTAELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHH 62

Query: 432 A 432
            
Sbjct: 63  V 63

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} Length = 301

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 373 GGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHA 428
            G  S   G+  VV G   G G A A     +GAR+V+++       +    +   G  A
Sbjct: 23  DGFLSGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDA 82

Query: 429 LSLA 432
             + 
Sbjct: 83  HGVV 86

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* Length = 254

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG 426
           L G    V GAG G G  +     A GAR+++ +R        A+ +G 
Sbjct: 9   LDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGA 57

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} Length = 277

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
           L  ++ +V G G G G+A A      GA VV+A+   D A  +A  +G  A  + 
Sbjct: 25  LNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVR 79

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} Length = 257

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSL 431
           S+A+  K+ ++ G   G GK +A     +GARVVI  RT ++  E    +    G  L++
Sbjct: 1   SNAMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTV 60

Query: 432 A 432
            
Sbjct: 61  Q 61

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* Length = 281

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
           L G++ ++ G   G G+AL     A+GARV + +++ +R REL    GG+A+ + 
Sbjct: 3   LTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVV 57

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} Length = 281

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 379 LAGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL 429
             G   +V G AGG G+A      A G  VVIA+   ++ + LA+ +G  A 
Sbjct: 28  FEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAE 79

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* Length = 287

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 14/91 (15%)

Query: 348 FGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGA-GGAGKALAYGAKAKGAR 406
            G NT     ++ +                ++ GK  VV+   G  G   A     +GA 
Sbjct: 96  NGSNTTAAAGVALVVKAA----------GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAE 145

Query: 407 VVIANRTYDRARELAETV---GGHALSLADL 434
           VV+  R  D+A+  A++V       ++ A+ 
Sbjct: 146 VVLCGRKLDKAQAAADSVNKRFKVNVTAAET 176

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 Length = 267

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 8/73 (10%)

Query: 379 LAGKLFVVIGAG-GAGKALAYG-AKAKGARVVIANRTYDR----ARELAETVGGHALSL- 431
           L G++ +V G   G G  +A G A+A G  VV+A+R  +     A++L E  G   ++  
Sbjct: 19  LRGRVALVTGGSRGLGFGIAQGLAEA-GCSVVVASRNLEEASEAAQKLTEKYGVETMAFR 77

Query: 432 ADLENFNPEDGMI 444
            D+ N+     ++
Sbjct: 78  CDVSNYEEVKKLL 90

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} Length = 245

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL 431
           L  K+ VV GA GG G  +     ++   V    R  +    LAE  G   +  
Sbjct: 3   LKKKIAVVTGATGGMGIEIVK-DLSRDHIVYALGRNPEHLAALAEIEGVEPIES 55

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} Length = 319

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV 424
            AG+   V G   G G  L      +G +V IA+   D   +   T+
Sbjct: 6   FAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATL 52

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} Length = 263

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
           L+G+  +V G   G G A+A      GA V IA+     A+ +   +     ++ 
Sbjct: 10  LSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVE 64

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} Length = 276

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSL-AD 433
           L+GK  ++ GA  G GK +A      GA+V +A R  D  + +A+ +   GG AL +  D
Sbjct: 30  LSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCD 89

Query: 434 LENFNPEDGMI 444
           +   +   GM+
Sbjct: 90  VTQPDQVRGML 100

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} Length = 281

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 373 GGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV 424
           G +  +   + ++V G G G GK +A G  A GA V+I  R  D+     + +
Sbjct: 3   GSMQLSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQEL 55

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A Length = 252

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSL--A 432
           L  ++ +V GA  G G+  A      GA V++  R  ++ R++A  +    G        
Sbjct: 10  LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFIL 69

Query: 433 DLENFNPEDGMILANTT 449
           DL     E+   LA   
Sbjct: 70  DLLTCTSENCQQLAQRI 86

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* Length = 254

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL 429
           L+GK  ++ G   G G   A  A A GARVV+A+   +     A  +G  A 
Sbjct: 3   LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAAR 54

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 Length = 303

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAE 422
           L G++ +V G   G GKA+       G+ VVIA+R  +R +  A+
Sbjct: 16  LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAAD 60

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} Length = 273

 Score = 40.2 bits (95), Expect = 7e-04
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
           L  K+ V+ GA  G G A A    A+GARV I  R  D        +GG A+ + 
Sbjct: 27  LNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQ 81

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* Length = 265

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 379 LAGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL 429
           + G + V+ G A G G A A     +GA  V+ +         A+ +G + +
Sbjct: 10  VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCV 61

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} Length = 280

 Score = 40.2 bits (95), Expect = 7e-04
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSLA 432
           L GK+ +V GA  G G+A A     +GA+VV+  R  +   EL + +   GG A +LA
Sbjct: 6   LEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALA 63

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} Length = 262

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSLA 432
           S+L+G++ VV GA  G G A+A    + GARVV+  R  ++ R +   +   GG A S A
Sbjct: 25  SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHA 84

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... Length = 286

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAE 422
           L GK  +V GA  G G+ +AY     GA VV+  R+ +  +++  
Sbjct: 26  LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVS 70

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* Length = 277

 Score = 40.3 bits (95), Expect = 8e-04
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDR----ARELAETVGGHALSLA 432
           L  K+  + G G G G  +A      G   VIA+R+  R    AR+LA   G   L L+
Sbjct: 25  LRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLS 83

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB: 3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E Length = 248

 Score = 39.8 bits (94), Expect = 9e-04
 Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL-ADLEN 436
           L GK+ +V GA  G GKA+A     +GA+V+    +   A+ +++ +G +   +  ++ N
Sbjct: 7   LEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTN 66

Query: 437 FNPEDGMI 444
               + ++
Sbjct: 67  PESIEAVL 74

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	465
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	100.0
4h3d_A	258	3-dehydroquinate dehydratase; structural genomics,	100.0
2yr1_A	257	3-dehydroquinate dehydratase; amino acid biosynthe	100.0
3o1n_A	276	3-dehydroquinate dehydratase; structural genomics,	100.0
1sfl_A	238	3-dehydroquinate dehydratase; 3-dehydroquinase, en	100.0
3l9c_A	259	3-dehydroquinate dehydratase; AROD, amino-acid bio	100.0
2ocz_A	231	3-dehydroquinate dehydratase; structural genomics,	100.0
2egz_A	219	3-dehydroquinate dehydratase; aquifex aeolicus VF5	100.0
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	100.0
2ox1_A	196	3-dehydroquinate dehydratase; (beta-alpha)8 barrel	100.0
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	100.0
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	100.0
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	100.0
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	100.0
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	100.0
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	100.0
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	100.0
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	100.0
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	100.0
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	100.0
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	100.0
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	100.0
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	100.0
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	100.0
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	100.0
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	100.0
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	99.94
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	99.92
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	99.6
3l07_A	285	Bifunctional protein fold; structural genomics, ID	99.03
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	99.02
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.96
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.93
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	98.64
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.6
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.59
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	98.53
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	98.52
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	98.48
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.48
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.38
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	98.32
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	98.31
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	98.24
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	98.23
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.21
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.2
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	98.2
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	98.17
4dqx_A	277	Probable oxidoreductase protein; structural genomi	98.17
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	98.16
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	98.14
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	98.12
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	98.12
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	98.1
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.09
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	98.08
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	98.08
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	98.08
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	98.07
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	98.07
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	98.05
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	98.04
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	98.03
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	98.03
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	98.02
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	98.02
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	98.02
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	98.01
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	98.01
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	98.01
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	98.0
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.98
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.98
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.98
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.97
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	97.97
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.97
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	97.97
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	97.97
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	97.97
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.96
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	97.96
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	97.96
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	97.95
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.95
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.95
3rih_A	293	Short chain dehydrogenase or reductase; structural	97.95
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.94
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.94
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	97.94
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	97.93
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.93
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	97.93
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	97.93
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	97.93
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	97.93
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	97.93
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	97.92
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	97.92
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.92
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.92
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.92
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	97.91
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	97.91
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.91
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	97.91
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	97.9
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	97.9
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	97.9
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	97.89
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.89
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	97.89
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	97.87
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	97.87
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.86
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	97.85
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	97.85
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.85
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	97.85
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.84
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	97.84
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.84
3cxt_A	291	Dehydrogenase with different specificities; rossma	97.84
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	97.84
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	97.83
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.83
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	97.83
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	97.83
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	97.82
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	97.82
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	97.82
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	97.82
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.81
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	97.81
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	97.81
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	97.81
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	97.81
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	97.8
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	97.8
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	97.8
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	97.8
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.8
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	97.8
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.79
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.79
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	97.79
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	97.79
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.79
1spx_A	278	Short-chain reductase family member (5L265); paral	97.78
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	97.78
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	97.78
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	97.78
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	97.77
1xkq_A	280	Short-chain reductase family member (5D234); parra	97.77
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	97.76
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	97.76
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	97.76
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	97.76
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	97.76
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	97.75
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.75
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.74
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	97.74
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	97.74
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	97.73
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.73
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	97.72
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	97.72
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	97.72
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	97.71
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	97.71
1xq1_A	266	Putative tropinone reducatse; structural genomics,	97.71
1xhl_A	297	Short-chain dehydrogenase/reductase family member	97.71
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	97.7
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	97.7
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	97.69
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	97.69
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	97.69
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	97.68
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	97.68
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	97.68
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	97.68
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	97.67
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	97.67
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	97.66
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.66
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	97.66
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	97.66
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	97.65
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	97.65
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	97.65
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.65
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	97.64
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	97.64
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	97.64
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.64
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	97.64
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.63
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	97.63
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	97.62
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.62
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	97.62
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	97.61
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	97.61
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.61
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	97.61
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	97.6
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	97.6
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	97.59
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	97.58
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	97.58
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	97.58
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	97.58
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	97.58
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.57
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	97.57
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	97.57
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	97.57
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	97.56
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	97.56
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	97.56
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.56
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	97.56
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	97.56
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	97.55
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	97.55
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	97.55
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.53
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	97.52
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	97.52
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	97.51
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	97.51
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.5
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	97.49
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	97.49
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	97.48
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	97.48
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	97.48
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	97.46
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.45
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.45
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.45
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	97.45
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.44
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.43
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	97.43
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.42
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	97.42
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	97.42
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.41
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.41
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	97.4
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	97.4
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	97.39
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	97.39
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	97.39
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.39
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.38
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.37
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	97.37
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.36
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	97.36
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	97.35
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.35
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	97.35
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	97.33
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	97.33
1xq6_A	253	Unknown protein; structural genomics, protein stru	97.33
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	97.33
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	97.33
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	97.32
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	97.32
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.31
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.31
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	97.3
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.29
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.29
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	97.28
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.27
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	97.27
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	97.27
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	97.27
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	97.26
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.26
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	97.24
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.23
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.22
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	97.2
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.2
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	97.2
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	97.2
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	97.17
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	97.15
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.14
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	97.14
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.14
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	97.13
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.13
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	97.12
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.12
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.12
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.11
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.09
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	97.08
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.06
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	97.06
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.05
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	97.05
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.04
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.04
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.02
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	97.02
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	97.02
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.02
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	97.02
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	97.0
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	97.0
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.97
3lt0_A	329	Enoyl-ACP reductase; triclosan, triclosan variant,	96.97
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	96.97
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.96
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	96.96
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.96
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	96.95
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	96.95
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.95
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.93
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	96.92
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.92
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	96.92
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	96.92
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.91
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.9
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	96.9
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	96.89
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	96.88
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.88
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	96.87
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.87
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	96.86
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	96.85
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.85
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	96.84
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.84
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	96.84
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.82
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	96.82
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.81
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	96.81
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	96.81
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	96.81
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	96.8
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	96.8
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	96.8
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	96.76
4e4y_A	244	Short chain dehydrogenase family protein; structur	96.76
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.75
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	96.75
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.75
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	96.74
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.72
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	96.72
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	96.71
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	96.71
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	96.71
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	96.71
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	96.7
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.7
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	96.68
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	96.67
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.67
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	96.67
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	96.67
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	96.66
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	96.65
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	96.64
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	96.63
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	96.62
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	96.62
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.61
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	96.61
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	96.6
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	96.6
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	96.6
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	96.59
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	96.59
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	96.58
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	96.57
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.56
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	96.56
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	96.55
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	96.54
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	96.53
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	96.53
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.53
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	96.53
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	96.52
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	96.52
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.51
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	96.49
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	96.49
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	96.49
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	96.49
3qha_A	296	Putative oxidoreductase; seattle structural genomi	96.48
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	96.48
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	96.48
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	96.47
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.47
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.46
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	96.46
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	96.45
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.45
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	96.45
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	96.44
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	96.43
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.43
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	96.42
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.42
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	96.42
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	96.41
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	96.4
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	96.4
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.4
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	96.39
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.38
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	96.37
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	96.37
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.36
4ezb_A	317	Uncharacterized conserved protein; structural geno	96.35
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	96.33
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	96.33
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	96.33
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	96.32
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	96.31
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.31
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	96.31
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.3
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.3
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	96.28
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.28
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	96.27
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	96.27
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.26
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.24
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.24
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	96.24
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	96.23
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.23
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	96.22
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.21
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.21
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	96.2
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	96.2
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	96.2
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	96.19
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.17
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	96.16
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.16
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.15
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	96.15
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	96.15
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	96.14
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	96.14
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	96.14
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	96.14
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	96.13
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	95.12
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	96.12
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.11
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	96.1
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.1
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	96.09
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	96.09
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.09
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	96.09
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.09
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.09
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	96.09
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	96.09
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	96.08
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	96.08
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.08
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.07
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	96.07
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.06
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	96.06
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	96.06
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	96.06
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	96.04
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.04
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.03
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	96.03
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.02
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	96.01
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	95.99
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.99
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.98
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	95.97

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=100.00  E-value=3.1e-98  Score=801.36  Aligned_cols=443  Identities=76%  Similarity=1.189  Sum_probs=390.0

Q ss_pred             CCCcEEEEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHH
Q 012352           21 KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENER  100 (465)
Q Consensus        21 ~~~~~icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~  100 (465)
                      +++|+|||||+++|++|++.++++....++|+||||+|+|++.++.++++.+++..++|+|||+|+++|||.++.++++|
T Consensus         2 ~~~~~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRvD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~   81 (523)
T 2o7s_A            2 KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPTLFTYRPKWEGGQYEGDENER   81 (523)
T ss_dssp             CSCCEEEEEECCSSHHHHHHHHHHHHHHTCSEEEEEGGGCSSCCHHHHHHHHHHHCSSCEEEECCBGGGTSSBCSCHHHH
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHHhhhcCCCEEEEEEecccccChHHHHHHHHhcCCCcEEEEecccccCCCCCCCHHHH
Confidence            67999999999999999999999888889999999999999877667898888888999999999999999999999999


Q ss_pred             HHHHHHHHHhCCcEEEEeeccccchhHHHHhcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHH
Q 012352          101 VDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDIT  180 (465)
Q Consensus       101 ~~~l~~~~~~~~~~iDiEl~~~~~~~~~l~~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKia~~~~~~~  180 (465)
                      +++|+.+++.|+||||||++.+++.++.+...+..++|||+|||||++||+++++.+++++|.++||||+|||+||++.+
T Consensus        82 ~~ll~~~~~~~~~yiDvEl~~~~~~~~~~~~~~~~~~kiI~S~H~f~~tp~~~~~~~~~~~~~~~gaDivKia~~a~~~~  161 (523)
T 2o7s_A           82 RDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVIVSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIA  161 (523)
T ss_dssp             HHHHHHHHHHTCSEEEEEHHHHHHHHHHTTTCCCTTCEEEEEEECSSCCCCHHHHHHHHHHHHTTTCSEEEEEEECSSGG
T ss_pred             HHHHHHHHHhCCCEEEEECCCchHHHHHHHHhccCCCEEEEEcccCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCHH
Confidence            99999999999999999999988888777655556899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCCCEEEEecCccchhhhhhccccCCccccccccCccCCCCCCCChhhHHhhhcccccCCCcceeeecC
Q 012352          181 DVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIG  260 (465)
Q Consensus       181 D~~~ll~~~~~~~~p~i~~~MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApGQ~~~~~l~~~~~~~~~~~~~~~~~~iG  260 (465)
                      |+++|++++.+.+.|+|+|+||+.|++||+++++|||++||++++++.++||||+++++++++|++.+++++|++|||||
T Consensus       162 D~~~l~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~lt~~~l~~~~~sApGQ~~~~~l~~~~~~~~~~~~~~~~~viG  241 (523)
T 2o7s_A          162 DVARMFHITSKAQVPTIGLVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIG  241 (523)
T ss_dssp             GHHHHHHHHHHCSSCEEEEEESGGGTHHHHCTTTTTCSEEECBSSTTCCSSTTCCBHHHHHHTSCGGGCCTTCEEEEEEE
T ss_pred             HHHHHHHHHhhcCCCEEEEEcCCCCchhhhhhhhcCCceeecCCCccccCCCCCCcHHHHHHHHhhhhccccceEEEEEC
Confidence            99999999888889999999999999999999999999999999865558999999999999999999999999999999


Q ss_pred             CCccccccHHHHHHHHHHcCCCeeEeccccccHHHHHHHhhcCCCCeeEeccCchHHHhhhccccCHHHHhccceeeEEE
Q 012352          261 KPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIR  340 (465)
Q Consensus       261 ~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~~~~A~~~gavNtv~~  340 (465)
                      +||+||+||.|||++|+++|+|+.|.+++++++.++++.++.++|.|+|||||||++|++++|++++.|+.+||||||++
T Consensus       242 ~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~~l~~~~~~~~~~~~~G~nVTiP~K~~i~~~ld~~~~~A~~iGAvNti~~  321 (523)
T 2o7s_A          242 KPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQCCDEVDPLAKSIGAVNTILR  321 (523)
T ss_dssp             SSCTTCCHHHHHHHHHHHTTCSEEEEEEECSCHHHHHHHTCSTTEEEEEECTTCHHHHHHHCSEECHHHHHHTCCSEEEE
T ss_pred             CCccCCccHHHHHHHHHHcCCCcEEEeEEcchHHHHHHHHhcCCCCEEEECCCCHHHHHHHhcccCHHHHHhCCCeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             eccCCeEEEEeccHHHHHHHHHhhhccCCCCCC--CcccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHH
Q 012352          341 RQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSG--GVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRAR  418 (465)
Q Consensus       341 ~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~--~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~  418 (465)
                      +..+|+++|+||||.|++.+++..+....+...  .....+++|+++|+|+||+|++++++|++.|++|+++||+.++++
T Consensus       322 ~~~~gk~~g~nTD~~G~~~~l~~~~~~~~~~~~~~~~~~~l~~k~vlV~GaGGig~aia~~L~~~G~~V~i~~R~~~~a~  401 (523)
T 2o7s_A          322 RKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERAL  401 (523)
T ss_dssp             CTTTCCEEEECCHHHHHHHHHHHHC-------------------CEEEECCSHHHHHHHHHHHHHCC-CEEEESSHHHHH
T ss_pred             ecCCCeEEEEcCCHHHHHHHHHHhhhhccccccccccccccCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            622789999999999999999875421000000  001346789999999999999999999999999999999999999


Q ss_pred             HHHHHHCCcccchhcccccCCCCeeEEEecCCCCCCCCCCCCCCC
Q 012352          419 ELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIP  463 (465)
Q Consensus       419 ~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~gm~~~~~~~p~~  463 (465)
                      +++++++.....++++.++....+|+||||||+||.+..+..|++
T Consensus       402 ~la~~~~~~~~~~~dl~~~~~~~~DilVN~agvg~~~~~~~~~~~  446 (523)
T 2o7s_A          402 ELAEAIGGKALSLTDLDNYHPEDGMVLANTTSMGMQPNVEETPIS  446 (523)
T ss_dssp             HHHHHTTC-CEETTTTTTC--CCSEEEEECSSTTCTTCTTCCSSC
T ss_pred             HHHHHcCCceeeHHHhhhccccCceEEEECCCCCCCCCCCCCCCC
Confidence            999988654445555543223458999999999997654444543

>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*

Probab=100.00  E-value=1.2e-57  Score=444.46  Aligned_cols=235  Identities=29%  Similarity=0.458  Sum_probs=209.2

Q ss_pred             ccccccCCCCCCcEEEEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhH----HHHHHhhC-CCcEEEEecc
Q 012352           12 SKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN----IKTLIKES-PVPTLFTYRP   86 (465)
Q Consensus        12 ~~~~~~~~~~~~~~icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~----l~~l~~~~-~~PiI~T~R~   86 (465)
                      .|+..-+++..+|+|||||+++|.+|++++++++...++|+||||+|+|++..+.+.    +..+++.. ++|+|||+|+
T Consensus         8 v~v~~~~ig~g~PkIcvpl~~~t~~e~l~~a~~~~~~~aD~vElR~D~l~~~~~~~~v~~~l~~lr~~~~~lPiI~T~Rt   87 (258)
T 4h3d_A            8 VQVKNITIGEGRPKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDIPLLFTFRS   87 (258)
T ss_dssp             EEETTEEETSSSCEEEEEECCSSHHHHHHHHHHHTTSSCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHCTTSCEEEECCC
T ss_pred             EEEcCEEeCCCCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEeeccccccCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            455566677789999999999999999999999888899999999999998765433    34444433 7999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CcEEEEeeccccchhHHHHh-cCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHH
Q 012352           87 IWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQA  164 (465)
Q Consensus        87 ~~eGG~~~~~~~~~~~~l~~~~~~~-~~~iDiEl~~~~~~~~~l~~-~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~  164 (465)
                      ++|||.++.++++|+++++.+++.+ +||||||+..+++..+.+.. ++.++++||+|||||++||+++++.+++.+|.+
T Consensus        88 ~~EGG~~~~~~~~~~~ll~~~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~kiI~S~Hdf~~TP~~~el~~~~~~~~~  167 (258)
T 4h3d_A           88 VVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKVIISNHDFNKTPKKEEIVSRLCRMQE  167 (258)
T ss_dssp             GGGTCSCCCCHHHHHHHHHHHHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHH
T ss_pred             hhhCCCCCCCHHHHHHHHHHHHhcCCchhhHHhhhccHHHHHHHHHHHHhCCCEEEEEEecCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999988 99999999999888777763 456899999999999999999999999999999


Q ss_pred             cCCCEEEEEeecCCHHHHHHHHHHhcc-----CCCCEEEEecCccchhhhhhccccCCccccccccCccCCCCCCCChhh
Q 012352          165 SGADIVKFATTALDITDVARVFQITVH-----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKD  239 (465)
Q Consensus       165 ~gadivKia~~~~~~~D~~~ll~~~~~-----~~~p~i~~~MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApGQ~~~~~  239 (465)
                      +||||+|||+||++.+|+++|++++..     .+.|+|+|+||+.|++||+++++|||++||++++++  +||||+++++
T Consensus       168 ~gaDIvKia~~~~~~~D~l~Ll~~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~fGS~lTf~~~~~~--sAPGQl~~~e  245 (258)
T 4h3d_A          168 LGADLPKIAVMPQNEKDVLVLLEATNEMFKIYADRPIITMSMSGMGVISRLCGEIFGSALTFGAAKSV--SAPGQISFKE  245 (258)
T ss_dssp             TTCSEEEEEECCSSHHHHHHHHHHHHHHHHHTCSSCBEEEECTGGGGGGGTCHHHHCBCEEECBCC-----CTTCCBHHH
T ss_pred             hCCCEEEEEEccCCHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCChHHHHHHHHhCCceEeccCCCC--CCCCCCCHHH
Confidence            999999999999999999999998653     378999999999999999999999999999999864  9999999999


Q ss_pred             HHhhhcccc
Q 012352          240 LLDLYNFRQ  248 (465)
Q Consensus       240 l~~~~~~~~  248 (465)
                      |+++|++++
T Consensus       246 l~~~l~lL~  254 (258)
T 4h3d_A          246 LNSVLNLLH  254 (258)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999764

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=2.9e-56  Score=434.60  Aligned_cols=233  Identities=28%  Similarity=0.365  Sum_probs=210.3

Q ss_pred             ccccccCCCCCCcEEEEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCch----hHHHHHHhhC-CCcEEEEecc
Q 012352           12 SKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR----ENIKTLIKES-PVPTLFTYRP   86 (465)
Q Consensus        12 ~~~~~~~~~~~~~~icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~----~~l~~l~~~~-~~PiI~T~R~   86 (465)
                      .|+...++++++|+|||||+++|.++++.+++++...++|+||||+|+|++.++.    +++..+++.. ++|+|||+|+
T Consensus         8 ~~v~~~~~g~~~p~Icv~l~~~~~~e~~~~~~~~~~~~~D~vElRvD~l~~~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt   87 (257)
T 2yr1_A            8 IKVRNIWIGGTEPCICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRAIDDQERVLATANGLRNIAGEIPILFTIRS   87 (257)
T ss_dssp             EEETTEEESSSSCEEEEEECCSSHHHHHHHHHHHHHSCCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHSSSCCEEEECCC
T ss_pred             EEEeeeeeCCCCcEEEEEecCCCHHHHHHHHHHHhhcCCCEEEEEeecccccCcHHHHHHHHHHHHHhccCCCEEEEEee
Confidence            5677778889999999999999999999999998888999999999999877543    2445566665 8999999999


Q ss_pred             CCCCCCC-CCCHHHHHHHHHHHHHhC-CcEEEEeeccccchhHHHH-hcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 012352           87 IWEGGQY-DGDENERVDVLRLAMELG-ADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQ  163 (465)
Q Consensus        87 ~~eGG~~-~~~~~~~~~~l~~~~~~~-~~~iDiEl~~~~~~~~~l~-~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~  163 (465)
                      ++|||.+ ..++++|+++++.+++.| +||||||+..++ ..+.+. ..+.+++|||+|||||++||+.+++.+++++|+
T Consensus        88 ~~eGG~~~~~~~~~~~~ll~~~~~~g~~d~iDvEl~~~~-~~~~l~~~~~~~~~kvI~S~Hdf~~tP~~~el~~~~~~~~  166 (257)
T 2yr1_A           88 EREGGQPIPLNEAEVRRLIEAICRSGAIDLVDYELAYGE-RIADVRRMTEECSVWLVVSRHYFDGTPRKETLLADMRQAE  166 (257)
T ss_dssp             TTTTCCCCSSCHHHHHHHHHHHHHHTCCSEEEEEGGGTT-HHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHH
T ss_pred             cccCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEECCCCh-hHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHHHHHH
Confidence            9999999 899999999999999999 999999999877 555554 345689999999999999999999999999999


Q ss_pred             HcCCCEEEEEeecCCHHHHHHHHHHhcc----CCCCEEEEecCccchhhhhhccccCCccccccccCccCCCCCCCChhh
Q 012352          164 ASGADIVKFATTALDITDVARVFQITVH----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKD  239 (465)
Q Consensus       164 ~~gadivKia~~~~~~~D~~~ll~~~~~----~~~p~i~~~MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApGQ~~~~~  239 (465)
                      ++||||+|||+||++.+|+++|++++.+    .+.|+|+||||+.|++||+++++|||++||+++++  ++||||+++++
T Consensus       167 ~~gaDivKia~~a~s~~D~l~ll~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~Tf~~l~~--~sAPGQl~~~e  244 (257)
T 2yr1_A          167 RYGADIAKVAVMPKSPEDVLVLLQATEEARRELAIPLITMAMGGLGAITRLAGWLFGSAVTFAVGNQ--SSAPGQIPIDD  244 (257)
T ss_dssp             HTTCSEEEEEECCSSHHHHHHHHHHHHHHHHHCSSCEEEEECTTTTHHHHHHGGGGTBCEEECBSSS--CSSTTCCBHHH
T ss_pred             hcCCCEEEEEeccCCHHHHHHHHHHHHHHhccCCCCEEEEECCCCcchHHHHHHHhCCceEecCCCC--CCCCCCCCHHH
Confidence            9999999999999999999999998754    36899999999999999999999999999999985  49999999999


Q ss_pred             HHhhhccc
Q 012352          240 LLDLYNFR  247 (465)
Q Consensus       240 l~~~~~~~  247 (465)
                      |+++|++.
T Consensus       245 l~~~l~~l  252 (257)
T 2yr1_A          245 VRTVLSIL  252 (257)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999864

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*

Probab=100.00  E-value=2.4e-56  Score=438.63  Aligned_cols=234  Identities=28%  Similarity=0.429  Sum_probs=212.0

Q ss_pred             ccccccCCCCCCcEEEEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCch----hHHHHHHhhC-CCcEEEEecc
Q 012352           12 SKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR----ENIKTLIKES-PVPTLFTYRP   86 (465)
Q Consensus        12 ~~~~~~~~~~~~~~icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~----~~l~~l~~~~-~~PiI~T~R~   86 (465)
                      .|+..-+++..+|+|||||+++|.++++.+++++...++|+||||+|+|++.++.    ++++.+++.. ++|+|||+|+
T Consensus        28 v~v~~~~~g~g~p~i~v~l~~~~~~e~~~~~~~~~~~gaD~VElRvD~l~~~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt  107 (276)
T 3o1n_A           28 VTVRDLVVGEGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRS  107 (276)
T ss_dssp             EEETTEEETSSSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHCCSSCEEEECCB
T ss_pred             EEECCEEeCCCCcEEEEEeCCCCHHHHHHHHHHHhhCCCCEEEEEeccccccCcHHHHHHHHHHHHHhcCCCCEEEEEEE
Confidence            4466677888899999999999999999999998768999999999999987653    3344555555 7999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CcEEEEeeccccchhHHHHh-cCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHH
Q 012352           87 IWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQA  164 (465)
Q Consensus        87 ~~eGG~~~~~~~~~~~~l~~~~~~~-~~~iDiEl~~~~~~~~~l~~-~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~  164 (465)
                      ++|||.++.++++|+++++.++++| |||||||+..+++.++++.. ++++++|||+|||||++||+.+++.+++++|.+
T Consensus       108 ~~eGG~~~~~~~~~~~ll~~~l~~g~~dyIDvEl~~~~~~~~~l~~~a~~~~~kvI~S~Hdf~~tP~~~el~~~~~~~~~  187 (276)
T 3o1n_A          108 AKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQE  187 (276)
T ss_dssp             GGGTCSBCCCHHHHHHHHHHHHHHTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHH
T ss_pred             hhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEECcCCHHHHHHHHHHHHhCCCEEEEEeecCCCCcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999 99999999998888877764 356899999999999999999999999999999


Q ss_pred             cCCCEEEEEeecCCHHHHHHHHHHhcc-----CCCCEEEEecCccchhhhhhccccCCccccccccCccCCCCCCCChhh
Q 012352          165 SGADIVKFATTALDITDVARVFQITVH-----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKD  239 (465)
Q Consensus       165 ~gadivKia~~~~~~~D~~~ll~~~~~-----~~~p~i~~~MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApGQ~~~~~  239 (465)
                      +||||+|||+||++.+|+++|++++.+     .+.|+|+|+||+.|++||+++++|||++||++++++  +||||+++++
T Consensus       188 ~GaDIvKia~~a~s~~Dvl~Ll~~~~~~~~~~~~~PlIa~~MG~~G~~SRi~~~~~GS~vTf~~l~~~--sAPGQl~~~~  265 (276)
T 3o1n_A          188 LGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGAISVAD  265 (276)
T ss_dssp             TTCSEEEEEECCSSHHHHHHHHHHHHHHHHHTCCSCCEEEECSGGGTHHHHCHHHHTCCEEECBSSCC--SSTTCCBHHH
T ss_pred             cCCCEEEEEecCCChHHHHHHHHHHHHHHhcCCCCCEEEEECCCchhhHHHHHHHhCCceEecCCCCC--CCCCCCCHHH
Confidence            999999999999999999999998754     478999999999999999999999999999999754  9999999999


Q ss_pred             HHhhhccc
Q 012352          240 LLDLYNFR  247 (465)
Q Consensus       240 l~~~~~~~  247 (465)
                      |+++++.+
T Consensus       266 l~~~l~~l  273 (276)
T 3o1n_A          266 LRTVLTIL  273 (276)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999864

>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*

Probab=100.00  E-value=7.9e-56  Score=427.28  Aligned_cols=223  Identities=26%  Similarity=0.396  Sum_probs=195.8

Q ss_pred             CCcEEEEeecc-CCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCch---hHHHHHHhhC-CCcEEEEeccCCCCCCCCCC
Q 012352           22 NPTLICVPIMG-ESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR---ENIKTLIKES-PVPTLFTYRPIWEGGQYDGD   96 (465)
Q Consensus        22 ~~~~icv~l~~-~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~---~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~   96 (465)
                      .+|+|||||++ +|.++++++++++...++|+||||+|+|++.+..   ++++.+++.. ++|+|||+|+++|||.++.+
T Consensus         2 ~~p~Icvpi~~~~~~~e~~~~~~~~~~~~~D~vElRvD~l~~~~~~~v~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~   81 (238)
T 1sfl_A            2 THVEVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFT   81 (238)
T ss_dssp             -CCEEEEEECCCC---CHHHHHHHHTTTTCSEEEEECTTSTTCCHHHHHHHHHHHC---CCSEEEEECCBGGGTSCBCCC
T ss_pred             CCCeEEEEecCCCCHHHHHHHHHHhhhcCCCEEEEEecccccCCHHHHHHHHHHHHHhccCCCEEEEeeccccCCCCCCC
Confidence            36899999999 9999999999998888999999999999876432   2333444444 78999999999999999999


Q ss_pred             HHHHHHHHHHHHHh-CCcEEEEeecc--ccchhHHHH-hcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 012352           97 ENERVDVLRLAMEL-GADYIDVELQV--AREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (465)
Q Consensus        97 ~~~~~~~l~~~~~~-~~~~iDiEl~~--~~~~~~~l~-~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKi  172 (465)
                      +++|+++++.+++. ++||||||+..  +++..+.+. .++.+++|||+|||||++||+.+++.+++++|+++||||+||
T Consensus        82 ~~~~~~ll~~~~~~~~~d~iDvEl~~~~~~~~~~~l~~~~~~~~~kvI~S~Hdf~~tp~~~el~~~~~~~~~~gaDivKi  161 (238)
T 1sfl_A           82 NDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKL  161 (238)
T ss_dssp             HHHHHHHHHHGGGCTTCCEEEEECCTTSCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEccCCCChHHHHHHHHHHHhcCCEEEEEecCCCCCcCHHHHHHHHHHHHHcCCCEEEE
Confidence            99999999999998 59999999998  777666665 345678999999999999999999999999999999999999


Q ss_pred             EeecCCHHHHHHHHHHhcc----CCCCEEEEecCccchhhhhhccccCCccccccccCccCCCCCCCChhhHHhhhcc
Q 012352          173 ATTALDITDVARVFQITVH----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (465)
Q Consensus       173 a~~~~~~~D~~~ll~~~~~----~~~p~i~~~MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApGQ~~~~~l~~~~~~  246 (465)
                      |+||++.+|+++|++++.+    .+.|+|+|+||+.|++||+++++|||++||++++++  +||||+++++|+++|++
T Consensus       162 a~~a~~~~D~l~ll~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~tf~~l~~~--sAPGQl~~~el~~~l~~  237 (238)
T 1sfl_A          162 AVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEP--QAPGQIDVTDLKAQVTL  237 (238)
T ss_dssp             EECCSSHHHHHHHHHHHHHHHHHCSSEEEEEECTGGGHHHHHTGGGGTBCEEEEBSSCC--SSTTCCBHHHHHHHHTT
T ss_pred             EecCCCHHHHHHHHHHHHHHhhcCCCCEEEEECCCCchHHHHHHHHhCCCeeecCCCCC--CCCCCCCHHHHHHHHHh
Confidence            9999999999999998765    478999999999999999999999999999999864  99999999999999875

>3l9c_A 3-dehydroquinate dehydratase; AROD, amino-acid biosynthesis, aromatic amino acid biosynthe schiff base, lyase; 1.60A {Streptococcus mutans}

Probab=100.00  E-value=1.5e-54  Score=421.35  Aligned_cols=232  Identities=25%  Similarity=0.383  Sum_probs=188.9

Q ss_pred             cccccccccc----cCCCCCCcEEEEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhh-CCCcEE
Q 012352            7 LVASGSKLVS----GGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-SPVPTL   81 (465)
Q Consensus         7 ~~~~~~~~~~----~~~~~~~~~icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI   81 (465)
                      ||.-|+...|    -+++.++|+|||||+++|.+|++ ++......++|+||||+|+|++.+..+..+.+++. .++|+|
T Consensus        14 ~~~~~~~~~~~~~~~~~g~g~pkIcvpl~~~t~~e~~-~~~~~~~~gaD~VElRvD~l~~~~~~~v~~~l~~~~~~~PiI   92 (259)
T 3l9c_A           14 LVPRGSHMASMTGGQQMGRGSMKIVVPVMPQNIEEAN-QLDLTRIDSTDIIEWRADYLVKDDILTVAPAIFEKFSGHEVI   92 (259)
T ss_dssp             SSCC----------------CCEEEEEECCSSHHHHH-HCCCTTCCTTCEEEEEGGGSCGGGHHHHHHHHHHHTTTSEEE
T ss_pred             cCcCcchhhhhcCCcEECCCCcEEEEEecCCCHHHHH-HHHHhhccCCCEEEEEeccccchhHHHHHHHHHHhcCCCcEE
Confidence            4555555544    36788999999999999999997 56555567999999999999854333334445554 589999


Q ss_pred             EEeccCCCCCCCCCCHHHHHHHHHHHHH-hCCcEEEEeeccccchhHHHHhcCCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 012352           82 FTYRPIWEGGQYDGDENERVDVLRLAME-LGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVA  160 (465)
Q Consensus        82 ~T~R~~~eGG~~~~~~~~~~~~l~~~~~-~~~~~iDiEl~~~~~~~~~l~~~~~~~~~iI~S~H~f~~tps~~el~~~~~  160 (465)
                      ||+|+++|||.++.++++|+++++.+++ .++||||||+..+++.++++.    +..+||+|||||++||+  ++.++|+
T Consensus        93 ~T~Rt~~EGG~~~~~~~~y~~ll~~~~~~~~~dyIDVEl~~~~~~~~~l~----~~~kiI~S~Hdf~~tp~--el~~~~~  166 (259)
T 3l9c_A           93 FTLRTEKEGGNISLSNEDYLAIIRDIAALYQPDYIDFEYFSYRDVLEEMY----DFSNLILSYHNFEETPE--NLMEVFS  166 (259)
T ss_dssp             EECCBGGGTCSBCCCHHHHHHHHHHHHHHHCCSEEEEEHHHHGGGGGGGT----TCSSEEEEEEESSCCCT--THHHHHH
T ss_pred             EEEeehhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECcCCHHHHHHHH----hcCeEEEEeccCCCCHH--HHHHHHH
Confidence            9999999999999999999999999998 789999999999888777664    34589999999999999  8999999


Q ss_pred             HHHHcCCCEEEEEeecCCHHHHHHHHHHhcc-----CCCCEEEEecCccchhhhhhccccCCccccccccCccCCCCCCC
Q 012352          161 RIQASGADIVKFATTALDITDVARVFQITVH-----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQP  235 (465)
Q Consensus       161 ~~~~~gadivKia~~~~~~~D~~~ll~~~~~-----~~~p~i~~~MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApGQ~  235 (465)
                      +|.++||||+|||+||++.+|+++|++++.+     .+.|+|+|+||+.|++||+++++|||++||++++++  +||||+
T Consensus       167 ~~~~~GaDIvKia~~a~s~~Dvl~Ll~~~~~~~~~~~~~PlIa~~MG~~G~~SRi~~~~~GS~lTf~~l~~~--sAPGQl  244 (259)
T 3l9c_A          167 ELTALAPRVVKIAVMPKNEQDVLDLMNYTRGFKTLNPNQEYVTMSMSKLGRISRLAADLIGSSWTFASLEQE--SAPGQI  244 (259)
T ss_dssp             HHHHTCCSEEEEEECCSSHHHHHHHHHHHHHHHHHCTTSEEEEEECTGGGHHHHHTHHHHTBSEEECBC---------CC
T ss_pred             HHHHcCCCEEEEEecCCCHHHHHHHHHHHHHHHhccCCCCEEEEECCCCcccHHHHHHHhCCccccccCCCC--CCCCCC
Confidence            9999999999999999999999999999753     368999999999999999999999999999999864  999999


Q ss_pred             ChhhHHhhhccc
Q 012352          236 TIKDLLDLYNFR  247 (465)
Q Consensus       236 ~~~~l~~~~~~~  247 (465)
                      ++++|+++|+++
T Consensus       245 ~~~el~~~l~~l  256 (259)
T 3l9c_A          245 SLADMRKIKEVL  256 (259)
T ss_dssp             BHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999999999865

>2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus pyogenes, dehydroshikimate, PSI-2, protein ST initiative; HET: MSE; 1.85A {Streptococcus pyogenes serotype M1}

Probab=100.00  E-value=1.5e-54  Score=416.18  Aligned_cols=219  Identities=25%  Similarity=0.330  Sum_probs=188.1

Q ss_pred             CCCcEEEEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhh-CC-CcEEEEeccCCCCCCCCCCHH
Q 012352           21 KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-SP-VPTLFTYRPIWEGGQYDGDEN   98 (465)
Q Consensus        21 ~~~~~icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~-~~-~PiI~T~R~~~eGG~~~~~~~   98 (465)
                      .++|+|||||+++|.++++.+++++.. ++|+||||+|+|++.+ .+.+...++. .. +|+|||+|+++|||.++.+++
T Consensus         1 ~~~~~Icvpi~~~t~~e~~~~~~~~~~-~~D~vElRvD~l~~~~-~~~v~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~   78 (231)
T 2ocz_A            1 SNAMRIVAPVMPRHFDEAQAIDISKYE-DVNLIEWRADFLPKDE-IVAVAPAIFEKFAGKEIIFTLRTVQEGGNITLSSQ   78 (231)
T ss_dssp             --CCEEEEEECCSSHHHHHTCCGGGGT-TCSEEEEEGGGSCGGG-HHHHHHHHHHHTTTSEEEEECCBGGGTCSBCCCHH
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHHHhcc-CCCEEEEEeccccccC-HHHHHHHHHHHcCCCcEEEEEeecccCCCCCCCHH
Confidence            368999999999999999999988644 8999999999998654 3345544333 43 899999999999999999999


Q ss_pred             HHHHHHHHHHHhC-CcEEEEeeccccchhHHHHhcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecC
Q 012352           99 ERVDVLRLAMELG-ADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTAL  177 (465)
Q Consensus        99 ~~~~~l~~~~~~~-~~~iDiEl~~~~~~~~~l~~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKia~~~~  177 (465)
                      +|+++++.+++.| +||||||+...+++++.+   + +.+|||+|||||++||  +++.+++++|+++||||+|||+||+
T Consensus        79 ~~~~ll~~~~~~g~~d~iDvEl~~~~~~i~~~---~-~~~kvI~S~Hdf~~tp--~el~~~~~~~~~~gaDivKia~~a~  152 (231)
T 2ocz_A           79 EYVDIIKEINAIYNPDYIDFEYFTHKSVFQEM---L-DFPNLILSYHNFEETP--ENLMEAFSEMTKLAPRVVKIAVMPQ  152 (231)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEETTTTGGGGGGG---T-TCSSEEEEEEESSCCC--TTHHHHHHHHHHTCCSEEEEEECCS
T ss_pred             HHHHHHHHHHHcCCCCEEEEECCCCHHHHHHh---h-cCCeEEEEecCCCCCH--HHHHHHHHHHHHcCCCEEEEEeecC
Confidence            9999999999998 999999999887665544   3 3499999999999999  8999999999999999999999999


Q ss_pred             CHHHHHHHHHHhcc-----CCCCEEEEecCccchhhhhhccccCCccccccccCccCCCCCCCChhhHHhhhccccc
Q 012352          178 DITDVARVFQITVH-----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQM  249 (465)
Q Consensus       178 ~~~D~~~ll~~~~~-----~~~p~i~~~MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApGQ~~~~~l~~~~~~~~~  249 (465)
                      +.+|+++|++++.+     .+.|+|+|+||+.|++||+++++|||++||++++++  +||||+++++|++++++.+.
T Consensus       153 ~~~D~l~ll~~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~Tf~~l~~~--sAPGQl~~~el~~~l~~l~~  227 (231)
T 2ocz_A          153 SEQDVLDLMNYTRGFKTLNPEQEFATISMGKLGRLSRFAGDVIGSSWTYVSLDHV--SGPGQVTLNDMKRIIEVLEM  227 (231)
T ss_dssp             SHHHHHHHHHHHHHHHHHCTTCEEEEEECHHHHGGGGGCHHHHTCCEEECBC--------CCCBHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHHHhhccCCCCEEEEEcCCCchhHHHHHHHhCCceEeccCCCC--CCCCCCCHHHHHHHHHHhhh
Confidence            99999999998653     367999999999999999999999999999999864  99999999999999987643

>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TLA; 1.75A {Aquifex aeolicus} PDB: 2ysw_A

Probab=100.00  E-value=4.3e-52  Score=396.22  Aligned_cols=212  Identities=28%  Similarity=0.407  Sum_probs=183.6

Q ss_pred             EEEEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCch---hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHH
Q 012352           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR---ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERV  101 (465)
Q Consensus        25 ~icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~  101 (465)
                      +|||||+++|.++++++++.   .++|+||||+|+|++.+..   ++++.+++. ++|+|||+|+++|||.   ++++|+
T Consensus         2 ~icv~l~~~~~~~~~~~~~~---~~~D~vElRvD~l~~~~~~~v~~~~~~lr~~-~~PiI~T~R~~~eGG~---~~~~~~   74 (219)
T 2egz_A            2 LIAVPLDDTNFSENLKKAKE---KGADIVELRVDQFSDTSLNYVKEKLEEVHSQ-GLKTILTIRSPEEGGR---EVKNRE   74 (219)
T ss_dssp             EEEEEECSTTHHHHHHHHHH---HTCSEEEEEGGGCSCCCHHHHHHHHHHHHHT-TCEEEEECCCGGGTCC---CCTTHH
T ss_pred             EEEEEeCCCCHHHHHHHHHH---cCCCEEEEEeccccccCHHHHHHHHHHHHhc-CCcEEEEEeehhccCC---CHHHHH
Confidence            59999999999999888775   3899999999999876542   334455554 7999999999999998   678999


Q ss_pred             HHHHHHHHhCCcEEEEeeccccchhHHHH-hcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHH
Q 012352          102 DVLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDIT  180 (465)
Q Consensus       102 ~~l~~~~~~~~~~iDiEl~~~~~~~~~l~-~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKia~~~~~~~  180 (465)
                      ++++.+++. +||||||+..+. ..+.+. ..+..+++||+|||||++||+.+++.+++++|+++|| |+|+|+||++.+
T Consensus        75 ~ll~~~~~~-~d~iDvEl~~~~-~~~~l~~~~~~~g~kvI~S~Hdf~~tp~~~el~~~~~~~~~~ga-ivKia~~a~~~~  151 (219)
T 2egz_A           75 ELFEELSPL-SDYTDIELSSRG-LLVKLYNITKEAGKKLIISYHNFELTPPNWIIREVLREGYRYGG-IPKIAVKANSYE  151 (219)
T ss_dssp             HHHHHHTTT-SSEEEEETTCHH-HHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTS-EEEEEEECSSHH
T ss_pred             HHHHHHHhc-CCEEEEEccCCc-cHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHHHHHHHcCC-EEEEEEccCCHH
Confidence            999999999 999999999841 111222 1234578999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHhccCCCCEEEEecCccchhhhhhccccCCccccccccCccCCCCCCCChhhHHhhhcccc
Q 012352          181 DVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQ  248 (465)
Q Consensus       181 D~~~ll~~~~~~~~p~i~~~MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApGQ~~~~~l~~~~~~~~  248 (465)
                      |+++|++++.+.+.|+|+|+||+.|++||+++++|||++||+++++  ++||||+++++++++|++.+
T Consensus       152 D~l~ll~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~tf~~l~~--~sAPGQl~~~el~~~l~~l~  217 (219)
T 2egz_A          152 DVARLLCISRQVEGEKILISMGDYGKISRLAGYVFGSVITYCSLEK--AFAPGQIPLEEMVELRKKFY  217 (219)
T ss_dssp             HHHHHHHHHTTSCSCBEEEEESSGGGGHHHHGGGGTBCEEECBCC-----CTTCCBHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCCCCEEEEECCCcchhHHHHHHHhCCceEecCCCC--CCCCCCCCHHHHHHHHHHhc
Confidence            9999999998888999999999999999999999999999999975  49999999999999998653

>2ox1_A 3-dehydroquinate dehydratase; (beta-alpha)8 barrel, lyase; 2.33A {Archaeoglobus fulgidus}

Probab=100.00  E-value=3.9e-50  Score=375.95  Aligned_cols=193  Identities=28%  Similarity=0.442  Sum_probs=176.9

Q ss_pred             EEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHH
Q 012352           27 CVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRL  106 (465)
Q Consensus        27 cv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~~l~~  106 (465)
                      +|||+++|.+| +++++.     +|+||||+|+|++.        ++ ..++|+|||+|+++|||.++.++++|+++++.
T Consensus         2 ~vpl~~~t~~~-~~~~~~-----aD~vElRvD~l~~~--------lr-~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~   66 (196)
T 2ox1_A            2 KLVATLSSPEE-LELAEK-----ADVVELRIDLFDFS--------GA-RVDKEKILTCRRVSDGGKFEGDERERIEKMKR   66 (196)
T ss_dssp             EEEEEECSHHH-HHHTTT-----CSEEEEETTTSCCT--------TS-CCCSEEEEECCBGGGTSSBCSCHHHHHHHHHH
T ss_pred             eeeEcCCCHHH-HHHHhc-----CCEEEEEEchhhhh--------HH-hcCCcEEEEEeecccCCCCCCCHHHHHHHHHH
Confidence            69999999999 887664     79999999999864        22 45799999999999999999999999999999


Q ss_pred             HHHhCC-cEEEEeeccccchhHHHHhcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHH
Q 012352          107 AMELGA-DYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARV  185 (465)
Q Consensus       107 ~~~~~~-~~iDiEl~~~~~~~~~l~~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKia~~~~~~~D~~~l  185 (465)
                      +++.|+ ||||||+..+++.++       +++|||+|||||++||+++++.++++  +++| ||+|||+||++.+|+++|
T Consensus        67 ~~~~g~~d~iDvEl~~~~~~i~-------~~~kvI~S~Hdf~~tp~~~~l~~~~~--~~~g-DivKia~~a~~~~D~l~l  136 (196)
T 2ox1_A           67 AFDSLNPDYVDLESDLPDSAFD-------FNCRIIESYHNFIRTPDYSELKGIVE--GRRG-DLVKIATMGKSKRDVETI  136 (196)
T ss_dssp             HHHHHCCSEEEEETTSCGGGCC-------CSSEEEEEEEESSCCCCHHHHHHHHH--TCCS-SEEEEEEECCSHHHHHHH
T ss_pred             HHHhCCCcEEEEECCCCHhHHh-------CCCEEEEEecCCCCCcCHHHHHHHHH--HHcC-CEEEEEEcCCCHHHHHHH
Confidence            999997 999999998776522       78999999999999999999999999  8899 999999999999999999


Q ss_pred             HHHhccCCCCEEEEecCccchhhhhhccccCCccccccccCccCCCCCCCChhhHHhhhccc
Q 012352          186 FQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFR  247 (465)
Q Consensus       186 l~~~~~~~~p~i~~~MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApGQ~~~~~l~~~~~~~  247 (465)
                      ++++.+.+ |+|+|+||+.|++||+++++|||++||+++++  ++||||++++++++++++.
T Consensus       137 l~~~~~~~-p~I~~~MG~~G~~SRi~~~~~gs~~t~~~~~~--~sAPGQl~~~el~~~l~~l  195 (196)
T 2ox1_A          137 VRILTNYD-DVVAFLMGERFSFTRVLAAYLGSPFIYCYVGS--PKAPGQISLDDAREIISRL  195 (196)
T ss_dssp             HHHHHHCS-SEEEEEESGGGTHHHHHHHHTTCSEEEEESSS--CSSTTCCBHHHHHHHHHHH
T ss_pred             HHHHhhCC-CeEEEEcCCCchhHHHhHhhhCCceEeccCCC--CCCCCCCCHHHHHHHHHHh
Confidence            99987765 99999999999999999999999999999975  4999999999999998753

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=100.00  E-value=1.9e-48  Score=384.07  Aligned_cols=197  Identities=29%  Similarity=0.482  Sum_probs=178.3

Q ss_pred             cCCCcceeeecCCCccccccHHHHHHHHHHcCCCeeEecccc--ccHHHHHHHhhcCCCCeeEeccCchHHHhhhccccC
Q 012352          249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD  326 (465)
Q Consensus       249 ~~~~~~~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~~  326 (465)
                      ++.+|++|||||+|++||+||.|||++|+++|+|+.|.++++  +++.++++.++.++|.|+|||||||+++++++|+++
T Consensus         1 ~s~~t~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~v~~l~~~~~~G~nVTiP~K~~v~~~ld~ls   80 (282)
T 3fbt_A            1 MSLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPKEKLKESVDTFKIIKCGGLNVTIPYKVEVMKELYEIS   80 (282)
T ss_dssp             --CCCEEEEEEESSCCCCHHHHHHHHHHHHHTCCEEEEEEECCGGGHHHHHHHHHHTTCCEEEECTTCTTGGGGGCSEEC
T ss_pred             CCCcceEEEEECCCccccchHHHHHHHHHHcCCCcEEEEEECCHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhcC
Confidence            467899999999999999999999999999999999999998  579999999988999999999999999999999999


Q ss_pred             HHHHhccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCC-
Q 012352          327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-  405 (465)
Q Consensus       327 ~~A~~~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~-  405 (465)
                      +.|+.+||||||+++  +|+|+||||||.||+++|++.           +.++++|+++|+|+||+|++++++|.+.|+ 
T Consensus        81 ~~A~~iGAVNTv~~~--~g~l~G~NTD~~G~~~~L~~~-----------~~~~~~k~vlvlGaGGaaraia~~L~~~G~~  147 (282)
T 3fbt_A           81 EKARKIGAVNTLKFS--REGISGFNTDYIGFGKMLSKF-----------RVEIKNNICVVLGSGGAARAVLQYLKDNFAK  147 (282)
T ss_dssp             HHHHHHTCCCEEEEC--SSCEEEECCHHHHHHHHHHHT-----------TCCCTTSEEEEECSSTTHHHHHHHHHHTTCS
T ss_pred             HHHHHcCCcceEEee--CCEEEeeCCcHHHHHHHHHHc-----------CCCccCCEEEEECCcHHHHHHHHHHHHcCCC
Confidence            999999999999988  899999999999999999763           246789999999999999999999999999 


Q ss_pred             eEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCCCCCCCCCCCCC
Q 012352          406 RVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIP  463 (465)
Q Consensus       406 ~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~gm~~~~~~~p~~  463 (465)
                      +|+|+||+.++++++++++.  ..+++++.+  + ++|+||||||+||.|..+++|++
T Consensus       148 ~v~v~nRt~~ka~~La~~~~--~~~~~~l~~--l-~~DivInaTp~Gm~~~~~~~pi~  200 (282)
T 3fbt_A          148 DIYVVTRNPEKTSEIYGEFK--VISYDELSN--L-KGDVIINCTPKGMYPKEGESPVD  200 (282)
T ss_dssp             EEEEEESCHHHHHHHCTTSE--EEEHHHHTT--C-CCSEEEECSSTTSTTSTTCCSSC
T ss_pred             EEEEEeCCHHHHHHHHHhcC--cccHHHHHh--c-cCCEEEECCccCccCCCccCCCC
Confidence            99999999999999987653  345666654  4 79999999999999876777765

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=100.00  E-value=2.2e-48  Score=388.82  Aligned_cols=201  Identities=30%  Similarity=0.514  Sum_probs=174.3

Q ss_pred             cccCCCcceeeecCCCccccccHHHHHHHHHHcCCCeeEecccc--ccHHHHHHHhhcCCCCeeEeccCchHHHhhhccc
Q 012352          247 RQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDE  324 (465)
Q Consensus       247 ~~~~~~~~~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~  324 (465)
                      ..++.+|++|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++.++|.|+|||||||++|++++|+
T Consensus        25 ~~i~~~t~~~gviG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~lD~  104 (312)
T 3t4e_A           25 MDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDNTTFASAIEGLKALKMRGTGVSMPNKQLACEYVDE  104 (312)
T ss_dssp             -----CCEEEEEEESCCTTCSHHHHHHHHHHHHTCSEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTSHHHHGGGCSE
T ss_pred             cccCCCceEEEEECCCccccccHHHHHHHHHHcCCCcEEEeEecCHHHHHHHHHHHhhCCCCEEEECchhHHHHHHHhhh
Confidence            35678899999999999999999999999999999999999998  4899999999999999999999999999999999


Q ss_pred             cCHHHHhccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCC
Q 012352          325 VDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKG  404 (465)
Q Consensus       325 ~~~~A~~~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G  404 (465)
                      +++.|+.+||||||+++  +|+|+||||||.||+++|++.           +.++++|+++|+|+||+|++++++|++.|
T Consensus       105 ls~~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~-----------~~~l~gk~~lVlGAGGaaraia~~L~~~G  171 (312)
T 3t4e_A          105 LTPAAKLVGAINTIVND--DGYLRGYNTDGTGHIRAIKES-----------GFDMRGKTMVLLGAGGAATAIGAQAAIEG  171 (312)
T ss_dssp             ECHHHHHHTCCSEEEEE--TTEEEEECHHHHHHHHHHHHT-----------TCCCTTCEEEEECCSHHHHHHHHHHHHTT
T ss_pred             cCHHHHHhCceeEEEec--CCEEEEeCCcHHHHHHHHHhc-----------CCCcCCCEEEEECcCHHHHHHHHHHHHcC
Confidence            99999999999999987  999999999999999999763           25678999999999999999999999999


Q ss_pred             C-eEEEEECC---HHHHHHHHHHHCCc------ccchhcc---cccCCCCeeEEEecCCCCCCCCCCCCCC
Q 012352          405 A-RVVIANRT---YDRARELAETVGGH------ALSLADL---ENFNPEDGMILANTTSIGMQPKVDETPI  462 (465)
Q Consensus       405 ~-~v~i~~R~---~~~a~~la~~~~~~------~~~~~~l---~~~~~~~~DilInaT~~gm~~~~~~~p~  462 (465)
                      + +|+|+||+   .+++++++++++..      ..+++++   .+ .+.++|+||||||+||.|. +..|+
T Consensus       172 ~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~-~l~~~DiIINaTp~Gm~~~-~~~~~  240 (312)
T 3t4e_A          172 IKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTE-ALASADILTNGTKVGMKPL-ENESL  240 (312)
T ss_dssp             CSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH-HHHHCSEEEECSSTTSTTS-TTCCS
T ss_pred             CCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHh-hccCceEEEECCcCCCCCC-CCCcc
Confidence            9 89999999   99999999887521      2234332   22 2346899999999999765 33443

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=100.00  E-value=3e-48  Score=383.73  Aligned_cols=198  Identities=27%  Similarity=0.404  Sum_probs=175.2

Q ss_pred             CcceeeecCCCccccccHHHHHHHHHHcCCCeeEeccc-------cccHHHHHHHhhcCCCCeeEeccCchHHHhhhccc
Q 012352          252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLL-------VDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDE  324 (465)
Q Consensus       252 ~~~~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~-------~~~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~  324 (465)
                      +|++|||||+||+||+||.|||++|+++|+|+.|.+++       .++++++++.++.++|.|+|||||||++|++++|+
T Consensus         3 ~t~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~lD~   82 (283)
T 3jyo_A            3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDE   82 (283)
T ss_dssp             CCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEETTSTTTTTCCHHHHHHHHHHTTCCEEEECTTCTTTTGGGSSE
T ss_pred             CceEEEEECCCccccccHHHHHHHHHHcCCCeEEEEEEccccCCCHHHHHHHHHHHhhCCCCEEEECcccHHHHHHHhhh
Confidence            58999999999999999999999999999999999995       35899999999999999999999999999999999


Q ss_pred             cCHHHHhccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCC
Q 012352          325 VDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKG  404 (465)
Q Consensus       325 ~~~~A~~~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G  404 (465)
                      +++.|+.+||||||+++. +|+|+||||||.||+++|++..           .++++|+++|+|+||+|++++++|++.|
T Consensus        83 l~~~A~~iGAVNTv~~~~-~g~l~G~NTD~~G~~~~l~~~~-----------~~l~~k~vlVlGaGG~g~aia~~L~~~G  150 (283)
T 3jyo_A           83 VSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEGL-----------PNAKLDSVVQVGAGGVGNAVAYALVTHG  150 (283)
T ss_dssp             ECHHHHHHTCCCEEEECT-TSCEEEECHHHHHHHHHHHHHC-----------TTCCCSEEEEECCSHHHHHHHHHHHHTT
T ss_pred             CCHHHHHhCcceEEEECC-CCeEEEecCCHHHHHHHHHHhC-----------cCcCCCEEEEECCcHHHHHHHHHHHHCC
Confidence            999999999999999873 7899999999999999998642           4578999999999999999999999999


Q ss_pred             C-eEEEEECCHHHHHHHHHHHCCc-------ccchhcccccCCCCeeEEEecCCCCCCCCCCCCCCC
Q 012352          405 A-RVVIANRTYDRARELAETVGGH-------ALSLADLENFNPEDGMILANTTSIGMQPKVDETPIP  463 (465)
Q Consensus       405 ~-~v~i~~R~~~~a~~la~~~~~~-------~~~~~~l~~~~~~~~DilInaT~~gm~~~~~~~p~~  463 (465)
                      + +|+|+||+.+++++++++++..       ..+++++.+ .+.++|+||||||+||.+. +++|++
T Consensus       151 ~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~-~l~~~DiVInaTp~Gm~~~-~~~pi~  215 (283)
T 3jyo_A          151 VQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIED-VIAAADGVVNATPMGMPAH-PGTAFD  215 (283)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHH-HHHHSSEEEECSSTTSTTS-CSCSSC
T ss_pred             CCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHH-HHhcCCEEEECCCCCCCCC-CCCCCC
Confidence            9 8999999999999999887521       123334443 3456899999999999876 556664

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=100.00  E-value=1.2e-47  Score=384.09  Aligned_cols=201  Identities=30%  Similarity=0.549  Sum_probs=179.3

Q ss_pred             ccCCCcceeeecCCCccccccHHHHHHHHHHcCCCeeEeccccc--cHHHHHHHhhcCCCCeeEeccCchHHHhhhcccc
Q 012352          248 QMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEV  325 (465)
Q Consensus       248 ~~~~~~~~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~  325 (465)
                      +++.+|++|||||+|++||+||.|||++|+++|+|+.|.+++++  +++++++.++.++|.|+|||||||++|++++|++
T Consensus        32 ~i~~~t~~~gviG~Pi~hS~SP~ihn~~f~~~Gl~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~lD~l  111 (315)
T 3tnl_A           32 RITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKL  111 (315)
T ss_dssp             CCCTTCEEEEEEESSCTTCSHHHHHHHHHHHHTCCEEEEEEECCHHHHHHHHHHHHHTTCCEEEECTTSTTTGGGGCSEE
T ss_pred             hcCCcccEEEEECCCccccccHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHhc
Confidence            46788999999999999999999999999999999999999884  8999999999999999999999999999999999


Q ss_pred             CHHHHhccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCC
Q 012352          326 DTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA  405 (465)
Q Consensus       326 ~~~A~~~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~  405 (465)
                      ++.|+.+||||||+++  +|+|+||||||.||+++|++.           +.++++|+++|+|+||+|++++++|++.|+
T Consensus       112 s~~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~-----------~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga  178 (315)
T 3tnl_A          112 SPAAELVGAVNTVVND--DGVLTGHITDGTGYMRALKEA-----------GHDIIGKKMTICGAGGAATAICIQAALDGV  178 (315)
T ss_dssp             CHHHHHHTCCSEEEEE--TTEEEEECCHHHHHHHHHHHT-----------TCCCTTSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CHHHHHhCccceEEec--CCEEEEeCCCHHHHHHHHHHc-----------CCCccCCEEEEECCChHHHHHHHHHHHCCC
Confidence            9999999999999987  999999999999999999763           256889999999999999999999999999


Q ss_pred             -eEEEEECC---HHHHHHHHHHHCC------cccchhc---ccccCCCCeeEEEecCCCCCCCCCCCCCC
Q 012352          406 -RVVIANRT---YDRARELAETVGG------HALSLAD---LENFNPEDGMILANTTSIGMQPKVDETPI  462 (465)
Q Consensus       406 -~v~i~~R~---~~~a~~la~~~~~------~~~~~~~---l~~~~~~~~DilInaT~~gm~~~~~~~p~  462 (465)
                       +|+|+||+   .+++++++++++.      ...++++   +.+ .+.++|+||||||+||.+..+.+|+
T Consensus       179 ~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~-~l~~aDiIINaTp~Gm~~~~~~~p~  247 (315)
T 3tnl_A          179 KEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRK-EIAESVIFTNATGVGMKPFEGETLL  247 (315)
T ss_dssp             SEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH-HHHTCSEEEECSSTTSTTSTTCCSC
T ss_pred             CEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHh-hhcCCCEEEECccCCCCCCCCCCCC
Confidence             99999999   9999999988752      1234433   322 3457899999999999987566666

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=100.00  E-value=9.2e-47  Score=372.63  Aligned_cols=192  Identities=26%  Similarity=0.432  Sum_probs=168.8

Q ss_pred             cCCCcceeeecCCCccccccHHHHHHHHHHcCCCeeEecccc--ccHHHHHHHhhcCCCCeeEeccCchHHHhhhccccC
Q 012352          249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD  326 (465)
Q Consensus       249 ~~~~~~~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~~  326 (465)
                      |..++++|+|||+||+||+||.|||++|+++|+|+.|.++++  +++.++++.++.++|+|+|||||||++|++++|+++
T Consensus         4 ~~~~m~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~ld~l~   83 (281)
T 3o8q_A            4 MASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNVTVPFKEEAYRFADRLT   83 (281)
T ss_dssp             ----CEEEEEECCSSSCCCHHHHHHHHHHHTTCCEEEEEECCCTTCHHHHHHHHHHTTCCEEEECTTSHHHHHHHCSEEC
T ss_pred             ccccccEEEEECCCCCccCcHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHHhCCCCEEEECCccHHHHHHHHhhcC
Confidence            456688999999999999999999999999999999999998  489999999988999999999999999999999999


Q ss_pred             HHHHhccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCC-
Q 012352          327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-  405 (465)
Q Consensus       327 ~~A~~~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~-  405 (465)
                      +.|+.+||||||+++. +|+|+||||||.||+++|++.           +.++++|+++|+|+||+|++++++|.+.|+ 
T Consensus        84 ~~A~~iGAVNTv~~~~-~g~l~G~NTD~~G~~~~L~~~-----------~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~  151 (281)
T 3o8q_A           84 ERARLAGAVNTLKKLD-DGEILGDNTDGEGLVQDLLAQ-----------QVLLKGATILLIGAGGAARGVLKPLLDQQPA  151 (281)
T ss_dssp             HHHHHHTCCSEEEECT-TSCEEEECCHHHHHHHHHHHT-----------TCCCTTCEEEEECCSHHHHHHHHHHHTTCCS
T ss_pred             HHHHhhCeeeEEEEcC-CCcEEEEecHHHHHHHHHHHh-----------CCCccCCEEEEECchHHHHHHHHHHHhcCCC
Confidence            9999999999999753 899999999999999999753           256789999999999999999999999997 


Q ss_pred             eEEEEECCHHHHHHHHHHHCC----cccchhcccccCCCCeeEEEecCCCCCCCC
Q 012352          406 RVVIANRTYDRARELAETVGG----HALSLADLENFNPEDGMILANTTSIGMQPK  456 (465)
Q Consensus       406 ~v~i~~R~~~~a~~la~~~~~----~~~~~~~l~~~~~~~~DilInaT~~gm~~~  456 (465)
                      +|+|+||+.+++++++++++.    ...+++++.    .++|+||||||.||.+.
T Consensus       152 ~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~----~~aDiIInaTp~gm~~~  202 (281)
T 3o8q_A          152 SITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLK----QSYDVIINSTSASLDGE  202 (281)
T ss_dssp             EEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCC----SCEEEEEECSCCCC---
T ss_pred             eEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhc----CCCCEEEEcCcCCCCCC
Confidence            999999999999999998863    223444332    57999999999999754

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=100.00  E-value=1.4e-46  Score=369.57  Aligned_cols=187  Identities=24%  Similarity=0.322  Sum_probs=169.7

Q ss_pred             ceeeecCCCccccccHHHHHHHHHHcCCCeeEecccc--ccHHHHHHHhhcCCCCeeEeccCchHHHhhhccccCHHHHh
Q 012352          254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKS  331 (465)
Q Consensus       254 ~~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~~~~A~~  331 (465)
                      .+||+||+||+||+||.|||++|+++|+|+.|.++++  +++.++++.++.++|.|+|||||||+++++++|++++.|+.
T Consensus         3 ~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~~d~l~~~A~~   82 (272)
T 3pwz_A            3 DRYAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGSLDDFEAQVLQFRSEGGKGMNITAPFKLRAFELADRRSERAQL   82 (272)
T ss_dssp             EEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHH
T ss_pred             cEEEEECCCcCCcccHHHHHHHHHHcCCCcEEEEEEcCHHHHHHHHHHHhhCCCCEEEECchhHHHHHHHHhhCCHHHHH
Confidence            4799999999999999999999999999999999988  48999999999899999999999999999999999999999


Q ss_pred             ccceeeEEEeccCCeEEEEeccHHHHHHH-HHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCC-eEEE
Q 012352          332 IGAVNCIIRRQSDGKLFGYNTDYVGAISA-IEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVI  409 (465)
Q Consensus       332 ~gavNtv~~~~~~g~l~G~NTD~~G~~~~-l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i  409 (465)
                      +||||||+++  +|+|+||||||.||+++ |++.           +.++++|+++|+|+||+|++++++|++.|+ +|+|
T Consensus        83 iGAvNTv~~~--~g~l~G~NTD~~G~~~~lL~~~-----------~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i  149 (272)
T 3pwz_A           83 ARAANALKFE--DGRIVAENFDGIGLLRDIEENL-----------GEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVI  149 (272)
T ss_dssp             HTCCSEEEEE--TTEEEEECCHHHHHHHHHHTTS-----------CCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEE
T ss_pred             hCccceEEcc--CCeEEEecCCHHHHHHHHHHHc-----------CCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEE
Confidence            9999999877  89999999999999999 7542           256789999999999999999999999997 9999


Q ss_pred             EECCHHHHHHHHHHHCC---cccchhcccccCCCCeeEEEecCCCCCCCC
Q 012352          410 ANRTYDRARELAETVGG---HALSLADLENFNPEDGMILANTTSIGMQPK  456 (465)
Q Consensus       410 ~~R~~~~a~~la~~~~~---~~~~~~~l~~~~~~~~DilInaT~~gm~~~  456 (465)
                      +||+.+++++++++++.   ...+++++..   .++|+||||||.||.+.
T Consensus       150 ~~R~~~~a~~la~~~~~~~~~~~~~~~l~~---~~~DivInaTp~gm~~~  196 (272)
T 3pwz_A          150 ANRDMAKALALRNELDHSRLRISRYEALEG---QSFDIVVNATSASLTAD  196 (272)
T ss_dssp             ECSCHHHHHHHHHHHCCTTEEEECSGGGTT---CCCSEEEECSSGGGGTC
T ss_pred             EeCCHHHHHHHHHHhccCCeeEeeHHHhcc---cCCCEEEECCCCCCCCC
Confidence            99999999999999874   2334555532   57899999999999754

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=100.00  E-value=2.9e-47  Score=372.87  Aligned_cols=182  Identities=29%  Similarity=0.481  Sum_probs=166.8

Q ss_pred             CcceeeecCCCccccccHHHHHHHH----HHcCCCeeEeccccccHHHHHHHhhcCCCCeeEeccCchHHHhhhccccCH
Q 012352          252 DTKVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDT  327 (465)
Q Consensus       252 ~~~~~~~iG~pi~hS~SP~~hn~~f----~~~gl~~~y~~~~~~~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~~~  327 (465)
                      +|++|+|||+||+||+||.|||++|    +++|+|+.|.++++++++++++.++.++|.|+|||||||++|++++|++++
T Consensus         2 k~~~~~viG~Pi~hS~SP~~hn~~f~~~~~~~gl~~~Y~~~~v~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~~d~l~~   81 (269)
T 3phh_A            2 KLKSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGANVTLPFKERAFQVCDKIKG   81 (269)
T ss_dssp             CEEEEEEEESSCTTCCHHHHHHHHHHHHHHHHSSEEEEEEEECCSSSCHHHHHHHTTEEEEEECTTCHHHHHHHSSEECG
T ss_pred             CceEEEEECCCccccccHHHHHHHHHHHHHHcCCCCEEeeEEhhhHHHHHHHHhhCCCCEEEEccccHHHHHHHHhhcCH
Confidence            4789999999999999999999999    999999999999999999999999989999999999999999999999999


Q ss_pred             HHHhccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCCeE
Q 012352          328 VAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARV  407 (465)
Q Consensus       328 ~A~~~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v  407 (465)
                      .|+.+||||||+++  +|+|+||||||.||+++|++ .              .+|+++|+|+||+|++++++|.+.|.+|
T Consensus        82 ~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~-~--------------~~k~vlvlGaGGaaraia~~L~~~G~~v  144 (269)
T 3phh_A           82 IALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQ-K--------------NYQNALILGAGGSAKALACELKKQGLQV  144 (269)
T ss_dssp             GGGGTTCCCEEEEE--TTEEEEECCHHHHHHHHCC------------------CCEEEEECCSHHHHHHHHHHHHTTCEE
T ss_pred             HHHHhCceeEEEee--CCEEEEecChHHHHHHHHHH-c--------------CCCEEEEECCCHHHHHHHHHHHHCCCEE
Confidence            99999999999987  99999999999999999754 1              1789999999999999999999999999


Q ss_pred             EEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCCCCCC
Q 012352          408 VIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPK  456 (465)
Q Consensus       408 ~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~gm~~~  456 (465)
                      +|+||+.+++++++ +++....+++++     .++|+||||||.||.+.
T Consensus       145 ~V~nRt~~ka~~la-~~~~~~~~~~~l-----~~~DiVInaTp~Gm~~~  187 (269)
T 3phh_A          145 SVLNRSSRGLDFFQ-RLGCDCFMEPPK-----SAFDLIINATSASLHNE  187 (269)
T ss_dssp             EEECSSCTTHHHHH-HHTCEEESSCCS-----SCCSEEEECCTTCCCCS
T ss_pred             EEEeCCHHHHHHHH-HCCCeEecHHHh-----ccCCEEEEcccCCCCCC
Confidence            99999999999999 887544444433     26899999999999864

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=100.00  E-value=8.4e-47  Score=371.85  Aligned_cols=187  Identities=30%  Similarity=0.541  Sum_probs=162.9

Q ss_pred             eeeecCCCccccccHHHHHHHHHHcCCCeeEecccc--ccHHHHHHHhhcCCCCeeEeccCchHHHhhhccccCHHHHhc
Q 012352          255 VFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSI  332 (465)
Q Consensus       255 ~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~~~~A~~~  332 (465)
                      .|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++.++|.|+|||||||++|++++|++++.|+.+
T Consensus         2 ~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~~d~l~~~A~~i   81 (277)
T 3don_A            2 KFAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIPHKERIIPYLDDINEQAKSV   81 (277)
T ss_dssp             EEEEEESSCTTCCHHHHHHHHHHHTTCCCEEEEEECCGGGGGGHHHHHHHTTCSEEEECTTCTTTTGGGCSEECHHHHHH
T ss_pred             EEEEECCCccccccHHHHHHHHHHcCcCcEEEEEEcCHHHHHHHHHHHhhCCCCEEEECcCCHHHHHHHhhhCCHHHHHh
Confidence            499999999999999999999999999999999998  489999999999999999999999999999999999999999


Q ss_pred             cceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEE
Q 012352          333 GAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIAN  411 (465)
Q Consensus       333 gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~  411 (465)
                      ||||||+++  +|+|+||||||.||+++|++.           +.++++|+++|+|+||+|++++++|.+.|+ +|+|+|
T Consensus        82 GAVNTv~~~--~g~l~G~NTD~~G~~~~L~~~-----------~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~  148 (277)
T 3don_A           82 GAVNTVLVK--DGKWIGYNTDGIGYVNGLKQI-----------YEGIEDAYILILGAGGASKGIANELYKIVRPTLTVAN  148 (277)
T ss_dssp             TCCCEEEEE--TTEEEEECCHHHHHHHHHHHH-----------STTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEEC
T ss_pred             CceeEEEec--CCEEEEECChHHHHHHHHHHh-----------CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            999999998  999999999999999999863           245788999999999999999999999999 999999


Q ss_pred             CCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCCCCCCC
Q 012352          412 RTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKV  457 (465)
Q Consensus       412 R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~gm~~~~  457 (465)
                      |+.++++++++.+  ....++++.+ .+.++|+||||||.||.+..
T Consensus       149 R~~~~a~~la~~~--~~~~~~~~~~-~~~~aDiVInaTp~Gm~~~~  191 (277)
T 3don_A          149 RTMSRFNNWSLNI--NKINLSHAES-HLDEFDIIINTTPAGMNGNT  191 (277)
T ss_dssp             SCGGGGTTCCSCC--EEECHHHHHH-TGGGCSEEEECCC-------
T ss_pred             CCHHHHHHHHHhc--ccccHhhHHH-HhcCCCEEEECccCCCCCCC
Confidence            9999988877432  2234555554 45678999999999998763

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=100.00  E-value=1.7e-44  Score=354.73  Aligned_cols=194  Identities=26%  Similarity=0.421  Sum_probs=171.3

Q ss_pred             cCCCcce-eeecCCCccccccHHHHHHHHHHcCCCeeEeccccccHHHHHHHhhcCCCCeeEeccCchHHHhhhccccCH
Q 012352          249 MGPDTKV-FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDT  327 (465)
Q Consensus       249 ~~~~~~~-~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~~~  327 (465)
                      ++.+|++ |+|||+|  ||+||.|||++|+++|+|+.|.+++.++++++++.++.++|.|+|||||||++|++++|++++
T Consensus         2 i~~~t~~~~~viG~P--hS~SP~~hn~~~~~~gl~~~Y~~~~~~~l~~~~~~~~~~~~~G~nVTiP~K~~i~~~~d~~~~   79 (271)
T 1npy_A            2 INKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRGCAVSMPFKETCMPFLDEIHP   79 (271)
T ss_dssp             CCTTCEEEEEECSSC--CSHHHHHHHHHHHHHTCCEEEEEECCSCHHHHHHHHHHHTCCEEEECTTCTTTTGGGCSEECH
T ss_pred             cCCCceEEEEEECCC--CcccHHHHHHHHHHcCCCcEEEeechhhHHHHHHHhccCCCCeEEECcCCHHHHHHHHHHhhH
Confidence            5678999 9999999  999999999999999999999999988999999999988999999999999999999999999


Q ss_pred             HHHhccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCC-e
Q 012352          328 VAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-R  406 (465)
Q Consensus       328 ~A~~~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~  406 (465)
                      .|+.+||||||+++  +|+|+||||||.||..+|++. .          .. .+++++|+|+||+|++++++|.+.|+ +
T Consensus        80 ~A~~iGAvNTi~~~--~g~l~g~NTD~~G~~~~l~~~-~----------~~-~~~~vlvlGaGgaarav~~~L~~~G~~~  145 (271)
T 1npy_A           80 SAQAIESVNTIVND--NGFLRAYNTDYIAIVKLIEKY-H----------LN-KNAKVIVHGSGGMAKAVVAAFKNSGFEK  145 (271)
T ss_dssp             HHHTTTCCCEEEEE--TTEEEEECHHHHHHHHHHHHT-T----------CC-TTSCEEEECSSTTHHHHHHHHHHTTCCC
T ss_pred             HHHHhCCCCceECc--CCEEEeecCCHHHHHHHHHHh-C----------CC-CCCEEEEECCcHHHHHHHHHHHHCCCCE
Confidence            99999999999987  999999999999999999763 1          22 46899999999999999999999998 8


Q ss_pred             EEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCCCCCC--CCCCCCC
Q 012352          407 VVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPK--VDETPIP  463 (465)
Q Consensus       407 v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~gm~~~--~~~~p~~  463 (465)
                      |+|+||+.+++++++++++..   +.+  .....++|+||||||.||.+.  .+..|++
T Consensus       146 i~v~nRt~~ka~~la~~~~~~---~~~--~~~~~~~DivInaTp~gm~~~~~~~~~~~~  199 (271)
T 1npy_A          146 LKIYARNVKTGQYLAALYGYA---YIN--SLENQQADILVNVTSIGMKGGKEEMDLAFP  199 (271)
T ss_dssp             EEEECSCHHHHHHHHHHHTCE---EES--CCTTCCCSEEEECSSTTCTTSTTTTSCSSC
T ss_pred             EEEEeCCHHHHHHHHHHcCCc---cch--hhhcccCCEEEECCCCCccCccccCCCCCC
Confidence            999999999999999988642   221  101357899999999999865  2334543

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=100.00  E-value=1.1e-43  Score=353.73  Aligned_cols=208  Identities=38%  Similarity=0.595  Sum_probs=179.5

Q ss_pred             hhcccccCCCcceeeecCCCccccccHHHHHHHHHHcCCCeeEecccc--ccHHHHHHHhhcCCCCeeEeccCchHHHhh
Q 012352          243 LYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVK  320 (465)
Q Consensus       243 ~~~~~~~~~~~~~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~vT~P~K~~v~~  320 (465)
                      -|++.+++..|++|++||+|++||+||.|||++|+++|+|+.|.++++  +++.++++.+++++|.|+|||||||++|++
T Consensus        13 ~~~~~~~~~~t~~~~viG~pi~hS~Sp~~hn~~~~~~Gl~~~Y~~~~~~~~~l~~~v~~l~~~~~~G~nVTiP~K~~i~~   92 (297)
T 2egg_A           13 GENLYFQGHMEKVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRALGIAGVNVTIPHKLAVIP   92 (297)
T ss_dssp             -------CCCCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCTTCHHHHHHHHHHHTCCEEEECTTCTTTTGG
T ss_pred             cccceecCCceeEEEEECCCcccccCHHHHHHHHHHcCcCcEEEEEEcCHHHHHHHHHHHhhCCCCeEEECCcCHHHHHH
Confidence            477889999999999999999999999999999999999999999998  589999999998899999999999999999


Q ss_pred             hccccCHHHHhccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHH
Q 012352          321 CCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGA  400 (465)
Q Consensus       321 ~~d~~~~~A~~~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L  400 (465)
                      ++|++++.|+.+||||||+++  +|+|+|+|||+.|+..+|+...          ..++.+++++|+|+||+|++++++|
T Consensus        93 ~ld~~~~~A~~iGavNti~~~--~g~l~g~nTd~~G~~~~l~~~~----------~~~l~~~~vlVlGaGg~g~aia~~L  160 (297)
T 2egg_A           93 FLDEVDEHARRIGAVNTIINN--DGRLVGYNTDGLGYVQALEEEM----------NITLDGKRILVIGAGGGARGIYFSL  160 (297)
T ss_dssp             GCSEECHHHHHHTCCCEEEEE--TTEEEEECCHHHHHHHHHHHHT----------TCCCTTCEEEEECCSHHHHHHHHHH
T ss_pred             HHHHHhHHHHHhCCCCeEECc--CCeEeeccCCHHHHHHHHHHhC----------CCCCCCCEEEEECcHHHHHHHHHHH
Confidence            999999999999999999997  8999999999999999997631          0356789999999999999999999


Q ss_pred             HHCCC-eEEEEECCHHHHHHHHHHHCC---cccchhcccccCCCCeeEEEecCCCCCCCCCCCCCCC
Q 012352          401 KAKGA-RVVIANRTYDRARELAETVGG---HALSLADLENFNPEDGMILANTTSIGMQPKVDETPIP  463 (465)
Q Consensus       401 ~~~G~-~v~i~~R~~~~a~~la~~~~~---~~~~~~~l~~~~~~~~DilInaT~~gm~~~~~~~p~~  463 (465)
                      .+.|+ +|+|+||+.+++++++++++.   ...+++++.+ .+.++|+||||||.+|.+..+..|++
T Consensus       161 ~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~-~~~~aDivIn~t~~~~~~~~~~~~i~  226 (297)
T 2egg_A          161 LSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAET-RLAEYDIIINTTSVGMHPRVEVQPLS  226 (297)
T ss_dssp             HTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHH-TGGGCSEEEECSCTTCSSCCSCCSSC
T ss_pred             HHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHh-hhccCCEEEECCCCCCCCCCCCCCCC
Confidence            99998 999999999999999998865   3344555544 45679999999999998654434443

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=100.00  E-value=2.1e-43  Score=347.48  Aligned_cols=190  Identities=26%  Similarity=0.395  Sum_probs=164.0

Q ss_pred             ceeeecCCCccccccHHHHHHHHHHcCCCeeEecccc--ccHHHHHHHhhcCCCCeeEeccCchHHHhhhccccCHHHHh
Q 012352          254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKS  331 (465)
Q Consensus       254 ~~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~~~~A~~  331 (465)
                      ++|+|||+||+||+||.|||++|+++|+|+.|.++++  +++.++++.+++++|.|+|||||||+++++++|++++.|+.
T Consensus         2 ~~~~viG~pi~hS~SP~~hn~~~~~~gl~~~y~~~~~~~~~l~~~i~~~~~~~~~G~nVT~P~K~~v~~~ld~~~~~A~~   81 (272)
T 1p77_A            2 DLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNITSPFKERAYQLADEYSQRAKL   81 (272)
T ss_dssp             EEEEEEESSCTTCCHHHHHHHHHHHTTCCEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHH
T ss_pred             cEEEEECCCcccccCHHHHHHHHHHCCcCeEEEEEEcCHHHHHHHHHHHHhCCCCEEEECcCCHHHHHHHHhhcCHHHHH
Confidence            6799999999999999999999999999999999998  58999999999999999999999999999999999999999


Q ss_pred             ccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEE
Q 012352          332 IGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIAN  411 (465)
Q Consensus       332 ~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~  411 (465)
                      +||||||+++. +|+|+||||||.||+.+|++.           +.++++|+++|+|+||+|++++++|++.|.+|+|+|
T Consensus        82 igavNti~~~~-~g~l~g~NTD~~G~~~~L~~~-----------~~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~  149 (272)
T 1p77_A           82 AEACNTLKKLD-DGKLYADNTDGIGLVTDLQRL-----------NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLAN  149 (272)
T ss_dssp             HTCCSEEEECT-TSCEEEECCHHHHHHHHHHHT-----------TCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEE
T ss_pred             hCCceEEEEcc-CCEEEEecCCHHHHHHHHHHh-----------CCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEE
Confidence            99999999842 899999999999999999763           145778999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHCCc-ccchhcccccCC-CCeeEEEecCCCCCCCC
Q 012352          412 RTYDRARELAETVGGH-ALSLADLENFNP-EDGMILANTTSIGMQPK  456 (465)
Q Consensus       412 R~~~~a~~la~~~~~~-~~~~~~l~~~~~-~~~DilInaT~~gm~~~  456 (465)
                      |+.+++++++++++.. .+...++.+ .. +++|+||||||.+|.+.
T Consensus       150 R~~~~a~~l~~~~~~~~~~~~~~~~~-~~~~~~DivIn~t~~~~~~~  195 (272)
T 1p77_A          150 RTFSKTKELAERFQPYGNIQAVSMDS-IPLQTYDLVINATSAGLSGG  195 (272)
T ss_dssp             SSHHHHHHHHHHHGGGSCEEEEEGGG-CCCSCCSEEEECCCC-----
T ss_pred             CCHHHHHHHHHHccccCCeEEeeHHH-hccCCCCEEEECCCCCCCCC
Confidence            9999999999887531 111112222 11 37999999999999754

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=100.00  E-value=1.4e-44  Score=352.01  Aligned_cols=177  Identities=38%  Similarity=0.597  Sum_probs=158.2

Q ss_pred             eeeecCCCccccccHHHHHHHHHHcCCCeeEeccccc--cHHHHHHHhhcCCCCeeEeccCchHHHhhhccccCHHHHhc
Q 012352          255 VFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSI  332 (465)
Q Consensus       255 ~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~~~~A~~~  332 (465)
                      +|+|||+||+||+||.|||++|+++|+|+.|.+++++  +++++++.++ ++|+|+|||||||++|++++|+ ++.|+.+
T Consensus         2 ~~~viG~pi~hS~SP~~hn~~~~~~gl~~~Y~~~~v~~~~l~~~~~~~~-~~~~G~nVT~P~K~~v~~~~d~-~~~A~~i   79 (253)
T 3u62_A            2 KFCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRIL-EEYDGFNATIPHKERVMRYVEP-SEDAQRI   79 (253)
T ss_dssp             EEEEEESSCTTCSHHHHHHHHHHHHTCCCEEEEEECCGGGHHHHHHHHH-HHCSEEEECTTCTTGGGGGSEE-CHHHHHH
T ss_pred             EEEEECCCccccccHHHHHHHHHHcCCCCEEEeEecCHHHHHHHHHHHh-hCCCceeecCChHHHHHHHhCC-CHHHHHc
Confidence            5999999999999999999999999999999999984  8999999999 9999999999999999999999 9999999


Q ss_pred             cceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEE
Q 012352          333 GAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIAN  411 (465)
Q Consensus       333 gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~  411 (465)
                      ||||||++   +   +||||||.||+++|++.             .+++ +++|+|+||+|++++++|.+.|+ +|+|+|
T Consensus        80 GAvNTi~~---~---~G~NTD~~G~~~~l~~~-------------~~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~n  139 (253)
T 3u62_A           80 KAVNCVFR---G---KGYNTDWVGVVKSLEGV-------------EVKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVN  139 (253)
T ss_dssp             TCCCEEET---T---EEECCHHHHHHHHTTTC-------------CCCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             CcceEeec---C---EEEcchHHHHHHHHHhc-------------CCCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEe
Confidence            99999975   3   99999999999998542             3467 89999999999999999999999 999999


Q ss_pred             CCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCCCCCC
Q 012352          412 RTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPK  456 (465)
Q Consensus       412 R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~gm~~~  456 (465)
                      |+.+++++++++++.  ..++++.+ .+.++|+||||||.||.|.
T Consensus       140 R~~~ka~~la~~~~~--~~~~~~~~-~~~~aDiVInatp~gm~p~  181 (253)
T 3u62_A          140 RTIERAKALDFPVKI--FSLDQLDE-VVKKAKSLFNTTSVGMKGE  181 (253)
T ss_dssp             SCHHHHHTCCSSCEE--EEGGGHHH-HHHTCSEEEECSSTTTTSC
T ss_pred             CCHHHHHHHHHHccc--CCHHHHHh-hhcCCCEEEECCCCCCCCC
Confidence            999999988876542  23444433 3456899999999999876

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=100.00  E-value=2.1e-42  Score=340.16  Aligned_cols=188  Identities=33%  Similarity=0.488  Sum_probs=167.5

Q ss_pred             ceeeecCCCccccccHHHHHHHHHHcCCCeeEecccc--ccHHHHHHHhhcCCCCeeEeccCchHHHhhhccccCHHHHh
Q 012352          254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKS  331 (465)
Q Consensus       254 ~~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~~~~A~~  331 (465)
                      ++|+|||+|++||+||.|||++|+++|+|+.|.++++  +++.++++.+++++|.|+|||||||+++++++|++++.|+.
T Consensus         2 ~~~~viG~pi~hS~Sp~~h~~~~~~~g~~~~y~~~~~~~~~l~~~i~~l~~~~~~G~nVT~P~K~~~~~~ld~~~~~A~~   81 (271)
T 1nyt_A            2 ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAAL   81 (271)
T ss_dssp             CSEEEEESSCTTCSHHHHHHHHHHHHTCCCCEEEEECCTTCHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHH
T ss_pred             CEEEEECCCcccccCHHHHHHHHHHCCCCcEEEEEEcCHHHHHHHHHHHHhCCCCeEEEccCCHHHHHHHHhhcCHHHHH
Confidence            5799999999999999999999999999999999998  58999999999999999999999999999999999999999


Q ss_pred             ccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEE
Q 012352          332 IGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIAN  411 (465)
Q Consensus       332 ~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~  411 (465)
                      +||||||+++. +|+|+|||||+.||+.+|++.           +.++.+|+++|+|+||+|++++++|++.|++|+++|
T Consensus        82 igavNti~~~~-~g~l~G~ntD~~G~~~~L~~~-----------~~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~  149 (271)
T 1nyt_A           82 AGAVNTLMRLE-DGRLLGDNTDGVGLLSDLERL-----------SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITN  149 (271)
T ss_dssp             HTCCSEEEECT-TSCEEEECCHHHHHHHHHHHH-----------TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             hCCceEEEEcC-CCeEEEeCCCHHHHHHHHHhc-----------CcCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEE
Confidence            99999999842 899999999999999999763           145778999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHCCc----ccchhcccccCCCCeeEEEecCCCCCCCC
Q 012352          412 RTYDRARELAETVGGH----ALSLADLENFNPEDGMILANTTSIGMQPK  456 (465)
Q Consensus       412 R~~~~a~~la~~~~~~----~~~~~~l~~~~~~~~DilInaT~~gm~~~  456 (465)
                      |+.+++++++++++..    ..+++++.  . +++|+||||||.++.+.
T Consensus       150 R~~~~~~~la~~~~~~~~~~~~~~~~~~--~-~~~DivVn~t~~~~~~~  195 (271)
T 1nyt_A          150 RTVSRAEELAKLFAHTGSIQALSMDELE--G-HEFDLIINATSSGISGD  195 (271)
T ss_dssp             SSHHHHHHHHHHTGGGSSEEECCSGGGT--T-CCCSEEEECCSCGGGTC
T ss_pred             CCHHHHHHHHHHhhccCCeeEecHHHhc--c-CCCCEEEECCCCCCCCC
Confidence            9999999999887531    11222222  1 57999999999998754

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=100.00  E-value=1.1e-41  Score=337.80  Aligned_cols=199  Identities=40%  Similarity=0.635  Sum_probs=175.5

Q ss_pred             cCCCcceeeecCCCccccccHHHHHHHHHHcCCCeeEecccc--ccHHHHHHHhhcCCCCeeEeccCchHHHhhhccccC
Q 012352          249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD  326 (465)
Q Consensus       249 ~~~~~~~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~~  326 (465)
                      ++.+|++|+|||+|++||+||.|||++|+++|+|+.|.++++  +++.++++.++.++|.|+|||+|||++|++++|+++
T Consensus         7 ~~~~~~~~~viG~pi~hS~Sp~~h~~~~~~~gi~~~y~~~~~~~~~l~~~i~~l~~~~~~G~nVtiP~k~~i~~~~d~~~   86 (287)
T 1nvt_A            7 INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIVGFNVTIPHKIEIMKYLDEID   86 (287)
T ss_dssp             CCTTCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCGGGGGGHHHHHHHHTCCEEEECTTSTTGGGGGCSEEC
T ss_pred             hcCCccEEEEECCCcccccCHHHHHHHHHHcCCCcEEEEEEcCHHHHHHHHHHHHhCCCCEEEEccCCHHHHHHHHHhcC
Confidence            667789999999999999999999999999999999999988  589999999988899999999999999999999999


Q ss_pred             HHHHhccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCCe
Q 012352          327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGAR  406 (465)
Q Consensus       327 ~~A~~~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~  406 (465)
                      +.|+.+|||||++++  +|+|+|+|||+.|++.+|++..           .++++|+++|+|+||+|++++++|++.| +
T Consensus        87 ~~a~~igavnt~~~~--~g~l~g~nTd~~G~~~~L~~~~-----------~~l~~k~vlV~GaGgiG~aia~~L~~~G-~  152 (287)
T 1nvt_A           87 KDAQLIGAVNTIKIE--DGKAIGYNTDGIGARMALEEEI-----------GRVKDKNIVIYGAGGAARAVAFELAKDN-N  152 (287)
T ss_dssp             HHHHHHTCCCEEEEE--TTEEEEECCHHHHHHHHHHHHH-----------CCCCSCEEEEECCSHHHHHHHHHHTSSS-E
T ss_pred             HHHHHhCceeeEEee--CCEEEEecCCHHHHHHHHHHhC-----------CCcCCCEEEEECchHHHHHHHHHHHHCC-C
Confidence            999999999999987  8999999999999999998631           4578899999999999999999999999 9


Q ss_pred             EEEEECCHHHHHHHHHHHCCc-------ccchhcccccCCCCeeEEEecCCCCCCCCCCCCCC
Q 012352          407 VVIANRTYDRARELAETVGGH-------ALSLADLENFNPEDGMILANTTSIGMQPKVDETPI  462 (465)
Q Consensus       407 v~i~~R~~~~a~~la~~~~~~-------~~~~~~l~~~~~~~~DilInaT~~gm~~~~~~~p~  462 (465)
                      |++++|+.+++++++++++..       .+++.++.+ ..+++|+|||+||.++.+..+..|+
T Consensus       153 V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~-~~~~~DilVn~ag~~~~~~~~~~~~  214 (287)
T 1nvt_A          153 IIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDV-DLDGVDIIINATPIGMYPNIDVEPI  214 (287)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTC-CCTTCCEEEECSCTTCTTCCSSCCS
T ss_pred             EEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHH-hhCCCCEEEECCCCCCCCCCCCCCC
Confidence            999999999999998877421       122222333 4678999999999999875444554

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=100.00  E-value=1.2e-39  Score=321.16  Aligned_cols=194  Identities=32%  Similarity=0.576  Sum_probs=173.0

Q ss_pred             cccCCCcceeeecCCCccccccHHHHHHHHHHcCCCeeEecccc--ccHHHHHHHhhcCCCCeeEeccCchHHHhhhccc
Q 012352          247 RQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDE  324 (465)
Q Consensus       247 ~~~~~~~~~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~  324 (465)
                      .+++.+|++||++|+|++||+||.|||++|+++|+|+.|.++++  +++.++++.++.++|.|+|||+|||+++++++|+
T Consensus         6 ~~~~~~t~~~~liG~pi~hs~sp~~h~~~~~~~g~~~~y~~~~~~~~~l~~~i~~l~~~~~~G~nvtiP~k~~i~~~ld~   85 (275)
T 2hk9_A            6 HMINAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVKGINVTVPFKEEIIPLLDY   85 (275)
T ss_dssp             -CCCTTCEEEEEEESSCTTCSHHHHHHHHHHHHTCSEEEEEEECCGGGHHHHHHHHHHHTCCEEEECTTSTTTTGGGCSE
T ss_pred             ccccCCceEEEEECCCcccccCHHHHHHHHHHcCCCcEEEEEECCHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999987  4899999999888999999999999999999999


Q ss_pred             cCHHHHhccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCC
Q 012352          325 VDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKG  404 (465)
Q Consensus       325 ~~~~A~~~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G  404 (465)
                      +++.|+.+|++|||+++  +|++.|+|||+.|++.+|++.           +.++.+++++|+|+|++|+++++.|.+.|
T Consensus        86 l~~~A~~~gavnti~~~--~g~~~g~nTd~~G~~~~l~~~-----------~~~~~~~~v~iiGaG~~g~aia~~L~~~g  152 (275)
T 2hk9_A           86 VEDTAKEIGAVNTVKFE--NGKAYGYNTDWIGFLKSLKSL-----------IPEVKEKSILVLGAGGASRAVIYALVKEG  152 (275)
T ss_dssp             ECHHHHHHTCCCEEEEE--TTEEEEECCHHHHHHHHHHHH-----------CTTGGGSEEEEECCSHHHHHHHHHHHHHT
T ss_pred             hhHHHHHhCCcceEEee--CCEEEeecCCHHHHHHHHHHh-----------CCCcCCCEEEEECchHHHHHHHHHHHHcC
Confidence            99999999999999987  899999999999999999763           13567899999999999999999999999


Q ss_pred             CeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCCCCCC
Q 012352          405 ARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPK  456 (465)
Q Consensus       405 ~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~gm~~~  456 (465)
                      ++|++++|+.+++++++++++....  .++.+ .+.++|+||||||.++.+.
T Consensus       153 ~~V~v~~r~~~~~~~l~~~~g~~~~--~~~~~-~~~~aDiVi~atp~~~~~~  201 (275)
T 2hk9_A          153 AKVFLWNRTKEKAIKLAQKFPLEVV--NSPEE-VIDKVQVIVNTTSVGLKDE  201 (275)
T ss_dssp             CEEEEECSSHHHHHHHTTTSCEEEC--SCGGG-TGGGCSEEEECSSTTSSTT
T ss_pred             CEEEEEECCHHHHHHHHHHcCCeee--hhHHh-hhcCCCEEEEeCCCCCCCC
Confidence            9999999999999998877653222  13333 3457899999999999754

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=100.00  E-value=6.7e-36  Score=292.24  Aligned_cols=183  Identities=36%  Similarity=0.581  Sum_probs=165.3

Q ss_pred             ceeeecCCCccccccHHHHHHHHHHcCCCeeEecccc--ccHHHHHHHhhcCCCCeeEeccCchHHHhhhccccCHHHHh
Q 012352          254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKS  331 (465)
Q Consensus       254 ~~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~~~~A~~  331 (465)
                      ++||+||+|++||+||.|||++|+++|+++.|.++++  +++.++++.++.. +.|+|||+|||+++++++|++++.|+.
T Consensus         2 ~~~~~~G~pi~hs~sp~~h~~~~~~~g~~~~y~~~~~~~~~l~~~i~~l~~~-~~G~~vt~P~k~~i~~~~~~l~~~a~~   80 (263)
T 2d5c_A            2 LRFAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRRA-FRGVNLTLPLKEAALAHLDWVSPEAQR   80 (263)
T ss_dssp             EEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCGGGHHHHHHHHHHH-CSEEEECTTCTTGGGGGCSEECHHHHH
T ss_pred             eEEEEECCCcccccCHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHhcccc-CceEEEcccCHHHHHHHHHHHhHHHHH
Confidence            6799999999999999999999999999999999977  4799999999776 999999999999999999999999999


Q ss_pred             ccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEE
Q 012352          332 IGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIAN  411 (465)
Q Consensus       332 ~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~  411 (465)
                      +|++||+.++  +|++.|+|||+.|++.+|++.           +.++++ +++|+|+|++|+++++.|.+.|++|++++
T Consensus        81 ~gavn~i~~~--~g~~~g~ntd~~g~~~~l~~~-----------~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~  146 (263)
T 2d5c_A           81 IGAVNTVLQV--EGRLFGFNTDAPGFLEALKAG-----------GIPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWN  146 (263)
T ss_dssp             HTCCCEEEEE--TTEEEEECCHHHHHHHHHHHT-----------TCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred             hCCCCcEEcc--CCeEEEeCCCHHHHHHHHHHh-----------CCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEE
Confidence            9999999987  899999999999999999763           145778 99999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCCCCCC
Q 012352          412 RTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPK  456 (465)
Q Consensus       412 R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~gm~~~  456 (465)
                      |+.+++++++++++..   ++++.+ . .++|+||+|||.+|.+.
T Consensus       147 r~~~~~~~l~~~~~~~---~~~~~~-~-~~~Divi~~tp~~~~~~  186 (263)
T 2d5c_A          147 RTPQRALALAEEFGLR---AVPLEK-A-REARLLVNATRVGLEDP  186 (263)
T ss_dssp             SSHHHHHHHHHHHTCE---ECCGGG-G-GGCSEEEECSSTTTTCT
T ss_pred             CCHHHHHHHHHHhccc---hhhHhh-c-cCCCEEEEccCCCCCCC
Confidence            9999999999988754   334444 3 57899999999998653

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=99.94  E-value=9.9e-28  Score=237.20  Aligned_cols=180  Identities=18%  Similarity=0.170  Sum_probs=146.7

Q ss_pred             CCccccccHHHHHHHHH-----HcCCCeeEecccc--ccHHHHHHHh-hcCCCCeeEeccCchH-HHhhhccccCHHHHh
Q 012352          261 KPVGHSKSPILYNEAFK-----SVGFNGVFVHLLV--DDIAKFFQTY-SSNDFAGFSCTIPHKE-AAVKCCDEVDTVAKS  331 (465)
Q Consensus       261 ~pi~hS~SP~~hn~~f~-----~~gl~~~y~~~~~--~~l~~~~~~l-~~~~~~G~~vT~P~K~-~v~~~~d~~~~~A~~  331 (465)
                      .||.||+||.|||.+|+     .+|+++.|.++++  +++.++++.+ ...+.+|+|+|.|||. ..+..++++.+.++.
T Consensus         2 ~~i~hs~sp~~h~~~~~~~~~~~~g~~~~y~~~~v~~~~~~~~~~~~~~~~~~~g~~~t~~~~~G~~~~~~~~~~~~~~~   81 (287)
T 1lu9_A            2 KKLLFQFDTDATPSVFDVVVGYDGGADHITGYGNVTPDNVGAYVDGTIYTRGGKEKQSTAIFVGGGDMAAGERVFEAVKK   81 (287)
T ss_dssp             CCEEEEEESSSSCCHHHHHHHHHTTCSEEEEESSCCTTTHHHHHHHHHSSCCGGGGGGEEEEEECSCHHHHHHHHHHHHH
T ss_pred             CceEEEccCCCCCCchhhheeeccCcceEeccCCcCHHHHHhhhcceEEecCccccccceEEEccchHHHHHHHHHHHHH
Confidence            69999999999999999     5999999999988  5899999986 5779999999999966 445566666666654


Q ss_pred             --ccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEc-cchhHHHHHHHHHHCCCeEE
Q 012352          332 --IGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIG-AGGAGKALAYGAKAKGARVV  408 (465)
Q Consensus       332 --~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~G-aGg~g~ai~~~L~~~G~~v~  408 (465)
                        +|++||++..  +  +.|+|||+.|+++++++.+.          .++++|+++|+| +||+|+++++.|++.|++|+
T Consensus        82 ~~~gavnt~~~~--~--~~G~nTd~~g~~~~l~~~~~----------~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~  147 (287)
T 1lu9_A           82 RFFGPFRVSCML--D--SNGSNTTAAAGVALVVKAAG----------GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVV  147 (287)
T ss_dssp             HCBTTBCCEEEE--C--STTHHHHHHHHHHHHHHHTT----------SCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEE
T ss_pred             hcCCCeEEEEec--C--CCcCCchHHHHHHHHHHhhc----------cCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEE
Confidence              5999999876  4  57999999999999976311          346789999999 79999999999999999999


Q ss_pred             EEECCHHHHHHHHHHHCC----cc--cch---hcccccCCCCeeEEEecCCCCCCC
Q 012352          409 IANRTYDRARELAETVGG----HA--LSL---ADLENFNPEDGMILANTTSIGMQP  455 (465)
Q Consensus       409 i~~R~~~~a~~la~~~~~----~~--~~~---~~l~~~~~~~~DilInaT~~gm~~  455 (465)
                      +++|+.++++++++++..    ..  .++   +++.+ .+.++|+|||+||++|.+
T Consensus       148 i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~~DvlVn~ag~g~~~  202 (287)
T 1lu9_A          148 LCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAE-AVKGAHFVFTAGAIGLEL  202 (287)
T ss_dssp             EEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHH-HTTTCSEEEECCCTTCCS
T ss_pred             EEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHH-HHHhCCEEEECCCccccC
Confidence            999999999998877632    11  233   22333 345689999999998753

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=99.92  E-value=3.2e-26  Score=237.30  Aligned_cols=181  Identities=15%  Similarity=0.203  Sum_probs=142.8

Q ss_pred             ccCCCcceee--ecCCCccccccHHHHHHH--HHHc-CCCeeEeccccc---cHHHHHHHhhcCCCCeeEe---ccCchH
Q 012352          248 QMGPDTKVFG--IIGKPVGHSKSPILYNEA--FKSV-GFNGVFVHLLVD---DIAKFFQTYSSNDFAGFSC---TIPHKE  316 (465)
Q Consensus       248 ~~~~~~~~~~--~iG~pi~hS~SP~~hn~~--f~~~-gl~~~y~~~~~~---~l~~~~~~l~~~~~~G~~v---T~P~K~  316 (465)
                      -++..|+++|  ++|.   ||.||.|||++  |+++ |+|+.|.+++++   +|.++++.++ ++|.|+||   |+|||+
T Consensus        68 vvtdgt~ilGlG~iG~---hS~sPvmh~ka~lf~~~gGid~~yi~ldv~d~de~~~~v~~l~-~~f~GinvED~T~P~k~  143 (439)
T 2dvm_A           68 VVSDGSRILGLGNIGP---LAGLPVMEGKALLFKRFGGVDAFPIMIKEQEPNKFIDIVKAIA-PTFGGINLEDIASPKCF  143 (439)
T ss_dssp             EEECSTTBTTTBCCCH---HHHHHHHHHHHHHHHHHHCCEEEEEECSCCSHHHHHHHHHHTG-GGCSEEEECSCCTTHHH
T ss_pred             EEECCCeEecccceec---cccCHHHHHHHHHHHHhCCCCCeeeeeecCCHHHHHHHHHHhC-ccCcEEEEEeCCCchHH
Confidence            4455677877  8998   99999999966  9999 899999999994   5566666665 89999999   999999


Q ss_pred             HHhhhccccCHHHHhccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHH
Q 012352          317 AAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKAL  396 (465)
Q Consensus       317 ~v~~~~d~~~~~A~~~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai  396 (465)
                      ++++++|+         ++||+++.. |++++| |||+.|++++|+..           +.++++++++|+|+||+|+++
T Consensus       144 ~il~~l~~---------avNt~vf~d-D~~gtg-ntd~aG~~~AL~~~-----------g~~l~~~rvlvlGAGgAg~ai  201 (439)
T 2dvm_A          144 YILERLRE---------ELDIPVFHD-DQQGTA-AVVLAGLLNALKVV-----------GKKISEITLALFGAGAAGFAT  201 (439)
T ss_dssp             HHHHHHHH---------HCSSCEEEH-HHHHHH-HHHHHHHHHHHHHH-----------TCCTTTCCEEEECCSHHHHHH
T ss_pred             HHHHHHHH---------hcCEEEEeC-CCcEEe-ehHHHHHHHHHHHh-----------CCCccCCEEEEECccHHHHHH
Confidence            99999976         999999863 788999 99999999999763           245788999999999999999


Q ss_pred             HHHHHHCCC---eEEEEE----CC--HHHHHH---HH---HHHCCc---ccchhcccccCCCCeeEEEecCCC--CCCC
Q 012352          397 AYGAKAKGA---RVVIAN----RT--YDRARE---LA---ETVGGH---ALSLADLENFNPEDGMILANTTSI--GMQP  455 (465)
Q Consensus       397 ~~~L~~~G~---~v~i~~----R~--~~~a~~---la---~~~~~~---~~~~~~l~~~~~~~~DilInaT~~--gm~~  455 (465)
                      ++.|...|+   +|+|+|    |+  ..+++.   +.   ..+...   ...+.++.+ .+.++|+|||+||.  ||.+
T Consensus       202 a~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e-~l~~aDVlInaT~~~~G~~~  279 (439)
T 2dvm_A          202 LRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQE-ALKDADVLISFTRPGPGVIK  279 (439)
T ss_dssp             HHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHH-HHTTCSEEEECSCCCSSSSC
T ss_pred             HHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHH-HhccCCEEEEcCCCccCCCC
Confidence            999999998   799999    88  333222   21   222110   012233333 34568999999999  8864

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=99.60  E-value=5.6e-17  Score=165.29  Aligned_cols=163  Identities=18%  Similarity=0.225  Sum_probs=128.6

Q ss_pred             ccccccHHHHHHHHHHcCC-CeeEeccccccHHHHHHHhhcCCCCeeEe-ccCchHHHhhhccccCHHHHhc----ccee
Q 012352          263 VGHSKSPILYNEAFKSVGF-NGVFVHLLVDDIAKFFQTYSSNDFAGFSC-TIPHKEAAVKCCDEVDTVAKSI----GAVN  336 (465)
Q Consensus       263 i~hS~SP~~hn~~f~~~gl-~~~y~~~~~~~l~~~~~~l~~~~~~G~~v-T~P~K~~v~~~~d~~~~~A~~~----gavN  336 (465)
                      |-+++||.+||..|.+.|+ ++.|..+.++  .++++.++..++.|+++ |+|||..++++++.+++.|..+    ||+|
T Consensus        70 i~~vksP~~~~~~~~~~g~~~~~y~~~~~~--~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~gA~n  147 (361)
T 1pjc_A           70 VVKVKEPLPAEYDLMQKDQLLFTYLHLAAA--RELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFGARF  147 (361)
T ss_dssp             EECSSCCCGGGGGGCCTTCEEEECCCGGGC--HHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCHHHHHhhcCCCEEEEEeccccC--HHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHHHHH
Confidence            3468899999999999997 8889988875  35667777779999999 9999999999999999999999    9999


Q ss_pred             eEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHH
Q 012352          337 CIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDR  416 (465)
Q Consensus       337 tv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~  416 (465)
                      |+...  +|+  |+.         + ..+           ..+.+++|+|+|+|++|++++..++..|++|++++|++++
T Consensus       148 t~~~~--~g~--G~~---------l-~~l-----------~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r  202 (361)
T 1pjc_A          148 LERQQ--GGR--GVL---------L-GGV-----------PGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVER  202 (361)
T ss_dssp             TSGGG--TSC--CCC---------T-TCB-----------TTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             Hhhcc--CCC--cee---------c-cCC-----------CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            99765  554  322         1 001           1245689999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCcc--c--chhcccccCCCCeeEEEecCCCCC
Q 012352          417 ARELAETVGGHA--L--SLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       417 a~~la~~~~~~~--~--~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      ++.+.+..+...  .  +.+++.+ .+.++|+|||||+.++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DvVI~~~~~~~  242 (361)
T 1pjc_A          203 LSYLETLFGSRVELLYSNSAEIET-AVAEADLLIGAVLVPG  242 (361)
T ss_dssp             HHHHHHHHGGGSEEEECCHHHHHH-HHHTCSEEEECCCCTT
T ss_pred             HHHHHHhhCceeEeeeCCHHHHHH-HHcCCCEEEECCCcCC
Confidence            988876654321  1  1223333 2346899999998865

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=99.03  E-value=2.1e-10  Score=111.92  Aligned_cols=164  Identities=13%  Similarity=0.142  Sum_probs=119.9

Q ss_pred             eeecCC-CccccccHHHHHHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCch-----HHHhhhccc
Q 012352          256 FGIIGK-PVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHK-----EAAVKCCDE  324 (465)
Q Consensus       256 ~~~iG~-pi~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K-----~~v~~~~d~  324 (465)
                      .-++|+ |-+++.- ..-.+.++++|++..+..+.-    +++.+.++.+ .++++.|+.|++|+.     +.++..++.
T Consensus        39 vilvg~dpaS~~Yv-~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p  117 (285)
T 3l07_A           39 AIIVGNDPASKTYV-ASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKP  117 (285)
T ss_dssp             EEEESCCHHHHHHH-HHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCG
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEcCCCCCCcCHHHHHhhCCc
Confidence            345564 4333322 334678999999998887743    3677777777 467999999999987     677777765


Q ss_pred             cCHHHHhccceeeEEEeccCCe-EEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccch-hHHHHHHHHHH
Q 012352          325 VDTVAKSIGAVNCIIRRQSDGK-LFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKA  402 (465)
Q Consensus       325 ~~~~A~~~gavNtv~~~~~~g~-l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg-~g~ai~~~L~~  402 (465)
                       +.++.-.+.+|+-..-  .|. -...+++..|++..|++.           +.+++||+++|+|.|+ +|+.++..|..
T Consensus       118 -~KDVDG~~~~N~G~l~--~g~~~~~~PcTp~gv~~lL~~~-----------~i~l~Gk~vvVIG~s~iVG~p~A~lL~~  183 (285)
T 3l07_A          118 -EKDVDGFHPTNVGRLQ--LRDKKCLESCTPKGIMTMLREY-----------GIKTEGAYAVVVGASNVVGKPVSQLLLN  183 (285)
T ss_dssp             -GGBTTCCSHHHHHHHH--HTCTTCCCCHHHHHHHHHHHHT-----------TCCCTTCEEEEECCCTTTHHHHHHHHHH
T ss_pred             -ccccccCChhheeehh--cCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCchhHHHHHHHHHH
Confidence             5566667777766432  232 346788899999998874           2578999999999998 79999999999


Q ss_pred             CCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          403 KGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       403 ~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      .|+.|++++|+....                 .+ ...++|+||+|+|..
T Consensus       184 ~gAtVtv~hs~t~~L-----------------~~-~~~~ADIVI~Avg~p  215 (285)
T 3l07_A          184 AKATVTTCHRFTTDL-----------------KS-HTTKADILIVAVGKP  215 (285)
T ss_dssp             TTCEEEEECTTCSSH-----------------HH-HHTTCSEEEECCCCT
T ss_pred             CCCeEEEEeCCchhH-----------------HH-hcccCCEEEECCCCC
Confidence            999999999853221                 12 234578888888753

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=99.02  E-value=3.1e-10  Score=110.76  Aligned_cols=163  Identities=15%  Similarity=0.207  Sum_probs=116.6

Q ss_pred             eeecCC-CccccccHHHHHHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCch-----HHHhhhccc
Q 012352          256 FGIIGK-PVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHK-----EAAVKCCDE  324 (465)
Q Consensus       256 ~~~iG~-pi~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K-----~~v~~~~d~  324 (465)
                      .-++|+ |-+++.- ..-.+.++++|++..+..++.    +++.+.++.+ .++++.|+.|++|+.     +.++..++-
T Consensus        38 vilvg~dpaS~~Yv-~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p  116 (285)
T 3p2o_A           38 VILVGDNPASQTYV-KSKAKACEECGIKSLVYHLNENITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIIS  116 (285)
T ss_dssp             EEEESCCHHHHHHH-HHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCG
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEecCCCCCCcCHHHHHhhCCc
Confidence            445664 3333332 233678999999998888763    3677777777 467999999999987     566666654


Q ss_pred             cCHHHHhccceeeEEEeccCCeEEE-EeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccch-hHHHHHHHHHH
Q 012352          325 VDTVAKSIGAVNCIIRRQSDGKLFG-YNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKA  402 (465)
Q Consensus       325 ~~~~A~~~gavNtv~~~~~~g~l~G-~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg-~g~ai~~~L~~  402 (465)
                       ..++.-...+|+-..-  .|...| .+++..|++..|++.           +.+++||+++|+|.|+ +|+.++..|..
T Consensus       117 -~KDVDg~~~~N~g~l~--~g~~~g~~PcTp~gv~~lL~~~-----------~i~l~Gk~vvVvGrs~iVG~p~A~lL~~  182 (285)
T 3p2o_A          117 -SKDVDGFHPINVGYLN--LGLESGFLPCTPLGVMKLLKAY-----------EIDLEGKDAVIIGASNIVGRPMATMLLN  182 (285)
T ss_dssp             -GGCTTCCSHHHHHHHH--TTCCSSCCCHHHHHHHHHHHHT-----------TCCCTTCEEEEECCCTTTHHHHHHHHHH
T ss_pred             -ccccccCCHhhhhhhh--cCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCchHHHHHHHHHHH
Confidence             4455556666754322  233333 788899999998874           2578999999999998 79999999999


Q ss_pred             CCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCC
Q 012352          403 KGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       403 ~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      .|+.|++++|+....++                  ...++|+||+|+|.
T Consensus       183 ~gAtVtv~h~~t~~L~~------------------~~~~ADIVI~Avg~  213 (285)
T 3p2o_A          183 AGATVSVCHIKTKDLSL------------------YTRQADLIIVAAGC  213 (285)
T ss_dssp             TTCEEEEECTTCSCHHH------------------HHTTCSEEEECSSC
T ss_pred             CCCeEEEEeCCchhHHH------------------HhhcCCEEEECCCC
Confidence            99999999986432221                  23456788887764

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.96  E-value=5.1e-10  Score=109.17  Aligned_cols=144  Identities=17%  Similarity=0.199  Sum_probs=107.2

Q ss_pred             eeecC-CCccccccHHHHHHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchH-----HHhhhccc
Q 012352          256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKE-----AAVKCCDE  324 (465)
Q Consensus       256 ~~~iG-~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~-----~v~~~~d~  324 (465)
                      .-++| +|-+++.- ..-.+.++++|++..+..+..    +++.+.++.+ .++++.|+.|++|+..     .++..++-
T Consensus        40 vilvg~dpaS~~Yv-~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p  118 (286)
T 4a5o_A           40 VILVGTDPASQVYV-AHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHP  118 (286)
T ss_dssp             EEEESCCHHHHHHH-HHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHTSCG
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCcCHHHHHhhCCc
Confidence            44566 44444322 233678999999998887743    3677777777 4679999999999877     66666654


Q ss_pred             cCHHHHhccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccch-hHHHHHHHHHHC
Q 012352          325 VDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAK  403 (465)
Q Consensus       325 ~~~~A~~~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg-~g~ai~~~L~~~  403 (465)
                       +.++.-...+|+-..-  .|.-...+++..|++..|++.           +.+++||+|+|+|.|+ +|+.++..|...
T Consensus       119 -~KDVDG~~~~N~g~l~--~g~~~~~PcTp~gv~~lL~~~-----------~i~l~Gk~vvVvGrs~iVG~plA~lL~~~  184 (286)
T 4a5o_A          119 -DKDVDGFHPYNIGRLA--QRMPLLRPCTPKGIMTLLAST-----------GADLYGMDAVVVGASNIVGRPMALELLLG  184 (286)
T ss_dssp             -GGCTTCCSHHHHHHHH--TTCCSSCCHHHHHHHHHHHHT-----------TCCCTTCEEEEECTTSTTHHHHHHHHHHT
T ss_pred             -ccccccCChhhhHHHh--cCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCchhHHHHHHHHHHC
Confidence             5556666777764322  333445788899999998874           2578999999999998 899999999999


Q ss_pred             CCeEEEEECCH
Q 012352          404 GARVVIANRTY  414 (465)
Q Consensus       404 G~~v~i~~R~~  414 (465)
                      |+.|+++.|..
T Consensus       185 gAtVtv~hs~T  195 (286)
T 4a5o_A          185 GCTVTVTHRFT  195 (286)
T ss_dssp             TCEEEEECTTC
T ss_pred             CCeEEEEeCCC
Confidence            99999998743

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.93  E-value=1.3e-09  Score=107.15  Aligned_cols=145  Identities=19%  Similarity=0.146  Sum_probs=107.1

Q ss_pred             eeecCC-CccccccHHHHHHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCch-----HHHhhhccc
Q 012352          256 FGIIGK-PVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHK-----EAAVKCCDE  324 (465)
Q Consensus       256 ~~~iG~-pi~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K-----~~v~~~~d~  324 (465)
                      .-++|+ |-+++.- ..-.+.++++|++..+..+.-    +++.+.++.+ .++++.|+.|++|+.     +.++..++-
T Consensus        42 vilvg~dpaS~~Yv-~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p  120 (300)
T 4a26_A           42 SIIVGQRMDSKKYV-QLKHKAAAEVGMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHP  120 (300)
T ss_dssp             EEEESCCHHHHHHH-HHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSCCCTTSCHHHHHHTSCG
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEcCCCCCCCCHHHHHhhCCc
Confidence            445664 4444332 233678999999998887743    3677777777 467999999999988     667776665


Q ss_pred             cCHHHHhccceeeEEEeccCC--eEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccch-hHHHHHHHHH
Q 012352          325 VDTVAKSIGAVNCIIRRQSDG--KLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAK  401 (465)
Q Consensus       325 ~~~~A~~~gavNtv~~~~~~g--~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg-~g~ai~~~L~  401 (465)
                       +.++.-.+.+|+-..-  .|  .-.-.+++..|++..|++.           +.+++||+++|+|.|+ +|+.++..|.
T Consensus       121 -~KDVDG~~~~N~G~l~--~g~~~~~~~PcTp~gv~~lL~~~-----------~i~l~Gk~vvVIG~s~iVG~p~A~lL~  186 (300)
T 4a26_A          121 -HKDADALLPVNVGLLH--YKGREPPFTPCTAKGVIVLLKRC-----------GIEMAGKRAVVLGRSNIVGAPVAALLM  186 (300)
T ss_dssp             -GGCTTCCSHHHHHHHH--CTTCCCSCCCHHHHHHHHHHHHH-----------TCCCTTCEEEEECCCTTTHHHHHHHHH
T ss_pred             -ccccccCCcceEEEee--cCCCcCCCCCCCHHHHHHHHHHc-----------CCCCCCCEEEEECCCchHHHHHHHHHH
Confidence             5556666777765322  12  1112678889999998874           2578999999999998 7999999999


Q ss_pred             HCCCeEEEEECCHH
Q 012352          402 AKGARVVIANRTYD  415 (465)
Q Consensus       402 ~~G~~v~i~~R~~~  415 (465)
                      ..|+.|++++|...
T Consensus       187 ~~gAtVtv~~~~T~  200 (300)
T 4a26_A          187 KENATVTIVHSGTS  200 (300)
T ss_dssp             HTTCEEEEECTTSC
T ss_pred             HCCCeEEEEeCCCC
Confidence            99999999998433

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=98.64  E-value=6.5e-08  Score=94.51  Aligned_cols=75  Identities=32%  Similarity=0.344  Sum_probs=61.7

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchh---cc-------cccCCCCe
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLA---DL-------ENFNPEDG  442 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~---~l-------~~~~~~~~  442 (465)
                      .|+||.+||+|++ |+|++++..|+++|++|++++|+.+++++++++++...    .|+.   ++       .+ ..++.
T Consensus        26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~-~~G~i  104 (273)
T 4fgs_A           26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKA-EAGRI  104 (273)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHH-HHSCE
T ss_pred             hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHH-HcCCC
Confidence            3789999999996 99999999999999999999999999999999997543    1221   11       12 35789


Q ss_pred             eEEEecCCCCC
Q 012352          443 MILANTTSIGM  453 (465)
Q Consensus       443 DilInaT~~gm  453 (465)
                      |+|||+++++.
T Consensus       105 DiLVNNAG~~~  115 (273)
T 4fgs_A          105 DVLFVNAGGGS  115 (273)
T ss_dssp             EEEEECCCCCC
T ss_pred             CEEEECCCCCC
Confidence            99999998764

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.60  E-value=2e-08  Score=88.07  Aligned_cols=72  Identities=19%  Similarity=0.254  Sum_probs=60.2

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      +++++|+|+|++|++++..|...|++|++++|+++++++++++++.....++++.+ .+.++|+||+|||.+.
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~Divi~at~~~~   92 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDS-LIKNNDVIITATSSKT   92 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHH-HHHTCSEEEECSCCSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHH-HhcCCCEEEEeCCCCC
Confidence            78999999999999999999999999999999999999999998754333444433 3456899999999773

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.59  E-value=3.2e-08  Score=100.06  Aligned_cols=96  Identities=13%  Similarity=0.069  Sum_probs=73.4

Q ss_pred             CCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHH-CCC-eEEEEECCHHHHHHHH
Q 012352          344 DGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYDRARELA  421 (465)
Q Consensus       344 ~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~-~G~-~v~i~~R~~~~a~~la  421 (465)
                      .+.++|+|||+.|++.+..  +.           ....+++.|+|+|++|++++.+|.. .+. +|+|+||+++++++++
T Consensus       105 ~~~lT~~RTaa~s~laa~~--la-----------~~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la  171 (350)
T 1x7d_A          105 LTIATALRTAATSLMAAQA--LA-----------RPNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLI  171 (350)
T ss_dssp             CHHHHHHHHHHHHHHHHHH--HS-----------CTTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHH
T ss_pred             CCEEEeehhhHHHHHHHHH--hc-----------cccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Confidence            4568899999999988863  32           1246899999999999999988754 566 8999999999999999


Q ss_pred             HHHCC----cccchhcccccCCCCeeEEEecCCCCC
Q 012352          422 ETVGG----HALSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       422 ~~~~~----~~~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      +++..    ....++++.+ .+.++|+||+|||.++
T Consensus       172 ~~~~~~~g~~~~~~~~~~e-av~~aDiVi~aTps~~  206 (350)
T 1x7d_A          172 ANLKEYSGLTIRRASSVAE-AVKGVDIITTVTADKA  206 (350)
T ss_dssp             HHHTTCTTCEEEECSSHHH-HHTTCSEEEECCCCSS
T ss_pred             HHHHhccCceEEEeCCHHH-HHhcCCEEEEeccCCC
Confidence            98842    1222233333 3456899999999874

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=98.53  E-value=6.5e-08  Score=96.70  Aligned_cols=94  Identities=17%  Similarity=0.092  Sum_probs=72.9

Q ss_pred             CCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHH-CCC-eEEEEECCHHHHHHHH
Q 012352          344 DGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYDRARELA  421 (465)
Q Consensus       344 ~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~-~G~-~v~i~~R~~~~a~~la  421 (465)
                      .+.+.++||+..|++.+..  +.           ....++++|+|+|++|+..+.+|.. .+. +|+|+||+++++++++
T Consensus       101 ~~~lt~~RTaa~s~laa~~--la-----------~~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la  167 (322)
T 1omo_A          101 ATYTTSLRTGAAGGIAAKY--LA-----------RKNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFV  167 (322)
T ss_dssp             CHHHHHHHHHHHHHHHHHH--HS-----------CTTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHh--cc-----------CCCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHH
Confidence            3457889999999887752  32           1246899999999999999999987 456 8999999999999999


Q ss_pred             HHHCC---cccchhcccccCCCCeeEEEecCCCCC
Q 012352          422 ETVGG---HALSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       422 ~~~~~---~~~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      ++++.   ... ++++.+ .+ ++|+||+|||.+.
T Consensus       168 ~~~~~~~~~~~-~~~~~e-~v-~aDvVi~aTp~~~  199 (322)
T 1omo_A          168 SYCEDRGISAS-VQPAEE-AS-RCDVLVTTTPSRK  199 (322)
T ss_dssp             HHHHHTTCCEE-ECCHHH-HT-SSSEEEECCCCSS
T ss_pred             HHHHhcCceEE-ECCHHH-Hh-CCCEEEEeeCCCC
Confidence            88752   122 444444 45 7999999999764

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=98.52  E-value=1.4e-07  Score=91.26  Aligned_cols=75  Identities=24%  Similarity=0.320  Sum_probs=60.4

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchh---cc-------cccC
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLA---DL-------ENFN  438 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~---~l-------~~~~  438 (465)
                      .+|+||.++|+|++ |+|++++..|+++|++|++++|+.++++++++++.   .+.    .|+.   ++       .+ .
T Consensus         3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~-~   81 (254)
T 4fn4_A            3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFE-T   81 (254)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH-H
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH-H
Confidence            57899999999996 99999999999999999999999999999988873   222    2221   11       12 3


Q ss_pred             CCCeeEEEecCCCC
Q 012352          439 PEDGMILANTTSIG  452 (465)
Q Consensus       439 ~~~~DilInaT~~g  452 (465)
                      .+..|+|||++++.
T Consensus        82 ~G~iDiLVNNAGi~   95 (254)
T 4fn4_A           82 YSRIDVLCNNAGIM   95 (254)
T ss_dssp             HSCCCEEEECCCCC
T ss_pred             cCCCCEEEECCccc
Confidence            57899999999864

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=98.48  E-value=2.1e-07  Score=90.05  Aligned_cols=76  Identities=30%  Similarity=0.342  Sum_probs=61.0

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchh---c-------ccccC
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLA---D-------LENFN  438 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~---~-------l~~~~  438 (465)
                      ++++||.++|+|++ |+|++++..|+++|++|++++|+.+++++.++++.   .+.    .|+.   +       +.+ .
T Consensus         5 f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~-~   83 (255)
T 4g81_D            5 FDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDA-E   83 (255)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHH-T
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH-H
Confidence            57899999999996 99999999999999999999999999999888773   221    1221   1       122 5


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .++.|+|||++++..
T Consensus        84 ~G~iDiLVNNAG~~~   98 (255)
T 4g81_D           84 GIHVDILINNAGIQY   98 (255)
T ss_dssp             TCCCCEEEECCCCCC
T ss_pred             CCCCcEEEECCCCCC
Confidence            678999999998764

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.48  E-value=1.5e-07  Score=97.01  Aligned_cols=76  Identities=34%  Similarity=0.550  Sum_probs=64.1

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCCCC
Q 012352          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQ  454 (465)
Q Consensus       378 ~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~gm~  454 (465)
                      ++.+++|+|+|+|++|++++..|...|+ +|+++||+.+++++++++++...++++++.+ .+.++|+||++||.++.
T Consensus       164 ~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~-~l~~aDvVi~at~~~~~  240 (404)
T 1gpj_A          164 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVD-HLARSDVVVSATAAPHP  240 (404)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHH-HHHTCSEEEECCSSSSC
T ss_pred             cccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHH-HhcCCCEEEEccCCCCc
Confidence            3578999999999999999999999999 9999999999999999999865555555544 34578999999987653

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.38  E-value=1.7e-07  Score=93.28  Aligned_cols=95  Identities=20%  Similarity=0.199  Sum_probs=71.6

Q ss_pred             CCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHC-CC-eEEEEECCHHHHHHHH
Q 012352          344 DGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYDRARELA  421 (465)
Q Consensus       344 ~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~-G~-~v~i~~R~~~~a~~la  421 (465)
                      .+.+.++||+..|++.+- . +.           ....+++.|+|+|.+|++++.+|.+. |+ +|+++||+++++++++
T Consensus       111 ~~~lt~~rT~a~~~la~~-~-la-----------~~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~  177 (312)
T 2i99_A          111 GNVITAKRTAAVSAIATK-F-LK-----------PPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFA  177 (312)
T ss_dssp             CHHHHHHHHHHHHHHHHH-H-HS-----------CTTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHH-H-hC-----------CCCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Confidence            345888999999988873 2 32           23467999999999999999999876 87 9999999999999999


Q ss_pred             HHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          422 ETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       422 ~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ++++.......++.+ .+.++|+||++||..
T Consensus       178 ~~~~~~~~~~~~~~e-~v~~aDiVi~atp~~  207 (312)
T 2i99_A          178 DTVQGEVRVCSSVQE-AVAGADVIITVTLAT  207 (312)
T ss_dssp             HHSSSCCEECSSHHH-HHTTCSEEEECCCCS
T ss_pred             HHhhCCeEEeCCHHH-HHhcCCEEEEEeCCC
Confidence            887621111223333 234689999999953

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=98.32  E-value=1.3e-06  Score=84.05  Aligned_cols=77  Identities=35%  Similarity=0.473  Sum_probs=55.8

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHH-HHHHHHHHHCCcc----cchhc---ccc-cCCCCeeEEE
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYD-RARELAETVGGHA----LSLAD---LEN-FNPEDGMILA  446 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~-~a~~la~~~~~~~----~~~~~---l~~-~~~~~~DilI  446 (465)
                      ++|+||.++|+|++ |+|++++..|+++|++|++++|+.+ ...+..++.+...    .|+.+   +.+ +..+..|+||
T Consensus         5 f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLV   84 (247)
T 4hp8_A            5 FSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDILV   84 (247)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCEEE
T ss_pred             cCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCEEE
Confidence            57899999999996 9999999999999999999999853 3333444444432    23322   111 1345799999


Q ss_pred             ecCCCCC
Q 012352          447 NTTSIGM  453 (465)
Q Consensus       447 naT~~gm  453 (465)
                      |++++..
T Consensus        85 NNAGi~~   91 (247)
T 4hp8_A           85 NNAGIIR   91 (247)
T ss_dssp             ECCCCCC
T ss_pred             ECCCCCC
Confidence            9998764

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=98.31  E-value=6.9e-07  Score=85.93  Aligned_cols=73  Identities=21%  Similarity=0.279  Sum_probs=56.8

Q ss_pred             CcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-c--cchh---cc-------cccCCCCeeEEE
Q 012352          381 GKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-A--LSLA---DL-------ENFNPEDGMILA  446 (465)
Q Consensus       381 ~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~--~~~~---~l-------~~~~~~~~DilI  446 (465)
                      +|+|||+|++ |+|++++..|+++|++|++++|+.+++++++++.+.. .  .|+.   ++       .+ .+++.|+||
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~-~~g~iDiLV   80 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAME-KLQRIDVLV   80 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHH-HHSCCCEEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHH-HcCCCCEEE
Confidence            4899999986 9999999999999999999999999998888765421 1  2221   11       12 357899999


Q ss_pred             ecCCCCCC
Q 012352          447 NTTSIGMQ  454 (465)
Q Consensus       447 naT~~gm~  454 (465)
                      |+++++..
T Consensus        81 NNAG~~~~   88 (247)
T 3ged_A           81 NNACRGSK   88 (247)
T ss_dssp             ECCCCCCC
T ss_pred             ECCCCCCC
Confidence            99987654

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=98.24  E-value=2.3e-06  Score=84.43  Aligned_cols=76  Identities=24%  Similarity=0.292  Sum_probs=60.7

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQ  454 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~gm~  454 (465)
                      ..+.+++++|+|+|++|++++..|...|++|++++|+.++.+.+.+ ++.....+.++.+ .+.++|+||+++|.++.
T Consensus       153 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~~~~~~~l~~-~l~~aDvVi~~~p~~~i  228 (300)
T 2rir_A          153 YTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITE-MGLVPFHTDELKE-HVKDIDICINTIPSMIL  228 (300)
T ss_dssp             SCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTCEEEEGGGHHH-HSTTCSEEEECCSSCCB
T ss_pred             CCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-CCCeEEchhhHHH-HhhCCCEEEECCChhhh
Confidence            4678999999999999999999999999999999999988766543 4443333344444 45679999999998764

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=98.23  E-value=2.4e-06  Score=84.04  Aligned_cols=76  Identities=22%  Similarity=0.272  Sum_probs=60.7

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQ  454 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~gm~  454 (465)
                      ..+.+++++|+|+|++|++++..|...|++|++++|+.++.+.+. +++....+++++.+ .+.++|+||+++|.++.
T Consensus       151 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~~~~~~l~~-~l~~aDvVi~~~p~~~i  226 (293)
T 3d4o_A          151 FTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIA-EMGMEPFHISKAAQ-ELRDVDVCINTIPALVV  226 (293)
T ss_dssp             SCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTSEEEEGGGHHH-HTTTCSEEEECCSSCCB
T ss_pred             CCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-HCCCeecChhhHHH-HhcCCCEEEECCChHHh
Confidence            457899999999999999999999999999999999998766554 45544333444544 45679999999998764

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.21  E-value=6e-07  Score=94.14  Aligned_cols=77  Identities=22%  Similarity=0.313  Sum_probs=57.3

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHCCcc--cch---hcccccCCCCeeEEEecCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAK-GARVVIANRTYDRARELAETVGGHA--LSL---ADLENFNPEDGMILANTTS  450 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~-G~~v~i~~R~~~~a~~la~~~~~~~--~~~---~~l~~~~~~~~DilInaT~  450 (465)
                      .++.+++|+|+|+|++|++++.+|.+. |++|++++|+.++++++++..+...  .++   +++.+ .+.++|+||||||
T Consensus        19 ~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~-~l~~~DvVIn~tp   97 (467)
T 2axq_A           19 GRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDK-VLADNDVVISLIP   97 (467)
T ss_dssp             ----CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHH-HHHTSSEEEECSC
T ss_pred             cCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHH-HHcCCCEEEECCc
Confidence            456788999999999999999999998 5699999999999999886533221  222   23333 2457899999999


Q ss_pred             CCCC
Q 012352          451 IGMQ  454 (465)
Q Consensus       451 ~gm~  454 (465)
                      .++.
T Consensus        98 ~~~~  101 (467)
T 2axq_A           98 YTFH  101 (467)
T ss_dssp             GGGH
T ss_pred             hhhh
Confidence            8864

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.20  E-value=1.7e-07  Score=93.15  Aligned_cols=172  Identities=15%  Similarity=0.076  Sum_probs=100.4

Q ss_pred             HHHHHHcCCCeeEeccccc-cHHHHHHHh-hcCCCCeeEeccCchHHH--hhhccccCHHHHhccceeeEEEeccCCeEE
Q 012352          273 NEAFKSVGFNGVFVHLLVD-DIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDGKLF  348 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~~-~l~~~~~~l-~~~~~~G~~vT~P~K~~v--~~~~d~~~~~A~~~gavNtv~~~~~~g~l~  348 (465)
                      .+..++.|+......+.-+ ++.+.++.+ .++.+.|+-|..|.-..+  -..++.+++. +.+...+.+-    -|+++
T Consensus        58 ~k~~~~~Gi~~~~~~l~~~~~l~~~i~~lN~d~~v~GIlvqlPlp~~~~~~~i~~~I~p~-KDVDG~~~~n----~g~l~  132 (320)
T 1edz_A           58 QKTSESMGFRYDLRVIEDKDFLEEAIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKE-KDVEGLNHVY----YQNLY  132 (320)
T ss_dssp             HHHHHHHTCEEEEEECSSGGGHHHHHHHHHHCTTCCEEEECSCSSSSHHHHHHTTTSCTT-TBTTCCSHHH----HHHHH
T ss_pred             HHHHHHcCCEEEEEECCChHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cccCcCChhh----hHHHh
Confidence            5678999999776655544 488888888 688999999999963221  1112222211 1111111110    00000


Q ss_pred             -------------EE-eccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchh-HHHHHHHHHHCCCeEEEEECC
Q 012352          349 -------------GY-NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGA-GKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       349 -------------G~-NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~-g~ai~~~L~~~G~~v~i~~R~  413 (465)
                                   ++ -.-..|.+..+++. +. -+..-|.+.++.+++|+|+|+|.+ |+.++..|...|++|+++||+
T Consensus       133 ~~~~~l~~~~~~~~~~PcTp~a~v~ll~~~-~~-~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          133 HNVRYLDKENRLKSILPCTPLAIVKILEFL-KI-YNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             TTCCBSSSSSCSBCCCCHHHHHHHHHHHHT-TC-SCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             cCCccccccccCCCcCCCcHHHHHHHHHhh-cc-cccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence                         00 01136666667662 00 000000134789999999999985 999999999999999999998


Q ss_pred             HHHHHHHHHHHCCcccc------h--hcccccCCCCeeEEEecCCCC
Q 012352          414 YDRARELAETVGGHALS------L--ADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       414 ~~~a~~la~~~~~~~~~------~--~~l~~~~~~~~DilInaT~~g  452 (465)
                      ..+..+.++.++.....      .  +++.+ .+.++|+||+||+..
T Consensus       211 ~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e-~l~~ADIVIsAtg~p  256 (320)
T 1edz_A          211 NIQKFTRGESLKLNKHHVEDLGEYSEDLLKK-CSLDSDVVITGVPSE  256 (320)
T ss_dssp             EEEEEESCCCSSCCCCEEEEEEECCHHHHHH-HHHHCSEEEECCCCT
T ss_pred             hHHHHhHHHHHhhhcccccccccccHhHHHH-HhccCCEEEECCCCC
Confidence            43333323333221111      1  44544 456789999999874

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=98.20  E-value=1.8e-06  Score=83.09  Aligned_cols=75  Identities=16%  Similarity=0.233  Sum_probs=57.4

Q ss_pred             cccCCcEEEEEccc---hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---C-cc----cchh---cc-------c
Q 012352          377 SALAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYDRARELAETVG---G-HA----LSLA---DL-------E  435 (465)
Q Consensus       377 ~~l~~k~vlV~GaG---g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~-~~----~~~~---~l-------~  435 (465)
                      .+++||++||+|++   |+|++++..|+++|++|++++|+.+..+++++.+.   . ..    .|+.   ++       .
T Consensus         2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   81 (256)
T 4fs3_A            2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIG   81 (256)
T ss_dssp             CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHH
Confidence            35889999999973   89999999999999999999999888777776653   2 11    2221   11       1


Q ss_pred             ccCCCCeeEEEecCCCC
Q 012352          436 NFNPEDGMILANTTSIG  452 (465)
Q Consensus       436 ~~~~~~~DilInaT~~g  452 (465)
                      + ..+..|++||++++.
T Consensus        82 ~-~~G~iD~lvnnAg~~   97 (256)
T 4fs3_A           82 K-DVGNIDGVYHSIAFA   97 (256)
T ss_dssp             H-HHCCCSEEEECCCCC
T ss_pred             H-HhCCCCEEEeccccc
Confidence            2 357899999999875

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=98.17  E-value=3.2e-06  Score=80.90  Aligned_cols=78  Identities=32%  Similarity=0.464  Sum_probs=60.8

Q ss_pred             ccccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---cccc------CCCC
Q 012352          376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---LENF------NPED  441 (465)
Q Consensus       376 ~~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~  441 (465)
                      ..++++|+++|+|++ |+|++++..|++.|++|++++|+.+++++++++++...    .|+.+   +.++      ..+.
T Consensus         4 ~m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   83 (261)
T 3n74_A            4 SMSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKFGK   83 (261)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             cccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            356789999999985 99999999999999999999999999999998886432    23221   1110      2357


Q ss_pred             eeEEEecCCCCC
Q 012352          442 GMILANTTSIGM  453 (465)
Q Consensus       442 ~DilInaT~~gm  453 (465)
                      .|+|||+++...
T Consensus        84 id~li~~Ag~~~   95 (261)
T 3n74_A           84 VDILVNNAGIGH   95 (261)
T ss_dssp             CCEEEECCCCCC
T ss_pred             CCEEEECCccCC
Confidence            899999998764

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=98.17  E-value=4.3e-06  Score=81.28  Aligned_cols=77  Identities=29%  Similarity=0.402  Sum_probs=60.5

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---cccc------CCCCe
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---LENF------NPEDG  442 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~  442 (465)
                      .++++|++||+|++ |+|++++..|++.|++|++++|+.+++++++++++...    .|+.+   +.+.      ..+..
T Consensus        23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  102 (277)
T 4dqx_A           23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGRV  102 (277)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            45789999999984 99999999999999999999999999999988886432    23221   1110      23578


Q ss_pred             eEEEecCCCCC
Q 012352          443 MILANTTSIGM  453 (465)
Q Consensus       443 DilInaT~~gm  453 (465)
                      |+|||+++++.
T Consensus       103 D~lv~nAg~~~  113 (277)
T 4dqx_A          103 DVLVNNAGFGT  113 (277)
T ss_dssp             CEEEECCCCCC
T ss_pred             CEEEECCCcCC
Confidence            99999998764

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=98.16  E-value=3.3e-06  Score=80.97  Aligned_cols=75  Identities=23%  Similarity=0.295  Sum_probs=59.5

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---cc-------ccCCCCe
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---LE-------NFNPEDG  442 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~-------~~~~~~~  442 (465)
                      .+++|+++|+|++ |+|++++..|++.|++|++++|+.++++++.++++...    .|+.+   +.       + ..+..
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~-~~g~i   83 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQ-TLGAI   83 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHH-HHSSE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHH-HhCCC
Confidence            4678999999985 99999999999999999999999999999988876432    23221   11       1 24579


Q ss_pred             eEEEecCCCCC
Q 012352          443 MILANTTSIGM  453 (465)
Q Consensus       443 DilInaT~~gm  453 (465)
                      |+|||++++..
T Consensus        84 d~lv~nAg~~~   94 (255)
T 4eso_A           84 DLLHINAGVSE   94 (255)
T ss_dssp             EEEEECCCCCC
T ss_pred             CEEEECCCCCC
Confidence            99999998764

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=98.14  E-value=3.9e-06  Score=79.99  Aligned_cols=76  Identities=34%  Similarity=0.438  Sum_probs=59.5

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---cccc------CCCCee
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---LENF------NPEDGM  443 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~D  443 (465)
                      .+++|+++|+|+ ||+|++++..|++.|++|++++|+.+++++++++++...    .|+.+   +.++      ..+..|
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   82 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGGID   82 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSCCS
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCC
Confidence            467899999998 599999999999999999999999999999988886432    23221   1110      235789


Q ss_pred             EEEecCCCCC
Q 012352          444 ILANTTSIGM  453 (465)
Q Consensus       444 ilInaT~~gm  453 (465)
                      +|||++++..
T Consensus        83 ~lv~nAg~~~   92 (247)
T 3rwb_A           83 ILVNNASIVP   92 (247)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEECCCCCC
Confidence            9999998753

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=98.12  E-value=2.4e-06  Score=82.61  Aligned_cols=76  Identities=21%  Similarity=0.160  Sum_probs=54.6

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHH--HHCCcc----cchhc---c-------cccCC
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAE--TVGGHA----LSLAD---L-------ENFNP  439 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~--~~~~~~----~~~~~---l-------~~~~~  439 (465)
                      .+++||.+||+|++ |+|++++..|+++|++|++++|+.++.+.+.+  +.+...    .|+.+   +       .+ .+
T Consensus         3 ~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~-~~   81 (258)
T 4gkb_A            3 LNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIA-TF   81 (258)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHH-HH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHH-Hh
Confidence            46899999999996 99999999999999999999998765433221  223221    22211   1       11 35


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      ++.|++||++++..
T Consensus        82 G~iDiLVNnAGi~~   95 (258)
T 4gkb_A           82 GRLDGLVNNAGVND   95 (258)
T ss_dssp             SCCCEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            78999999998753

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=98.12  E-value=5.9e-06  Score=79.19  Aligned_cols=76  Identities=29%  Similarity=0.402  Sum_probs=59.6

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---cccc------CCCCee
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---LENF------NPEDGM  443 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~D  443 (465)
                      .+++|++||+|+ ||+|++++..|++.|++|++++|+.+++++++++++...    .|+.+   +.+.      ..+..|
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   84 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGGLD   84 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSSCC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence            467899999998 599999999999999999999999999999998886432    23221   1110      345799


Q ss_pred             EEEecCCCCC
Q 012352          444 ILANTTSIGM  453 (465)
Q Consensus       444 ilInaT~~gm  453 (465)
                      +|||+++...
T Consensus        85 ~lv~~Ag~~~   94 (259)
T 4e6p_A           85 ILVNNAALFD   94 (259)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEECCCcCC
Confidence            9999998753

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=98.10  E-value=5.1e-06  Score=80.81  Aligned_cols=77  Identities=29%  Similarity=0.342  Sum_probs=59.3

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---cccc------CCCCe
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---LENF------NPEDG  442 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~  442 (465)
                      .++++|++||+|++ |+|++++..|++.|++|++++|+.+++++++++++...    .|+.+   +.+.      ..+..
T Consensus        25 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  104 (277)
T 3gvc_A           25 PDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGV  104 (277)
T ss_dssp             --CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            35789999999985 99999999999999999999999999999998886432    23221   1110      24578


Q ss_pred             eEEEecCCCCC
Q 012352          443 MILANTTSIGM  453 (465)
Q Consensus       443 DilInaT~~gm  453 (465)
                      |+|||++++..
T Consensus       105 D~lvnnAg~~~  115 (277)
T 3gvc_A          105 DKLVANAGVVH  115 (277)
T ss_dssp             CEEEECCCCCC
T ss_pred             CEEEECCCCCC
Confidence            99999998764

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.09  E-value=3e-06  Score=70.37  Aligned_cols=70  Identities=19%  Similarity=0.150  Sum_probs=53.4

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHCCcc--cch---hcccccCCCCeeEEEecCCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKG-ARVVIANRTYDRARELAETVGGHA--LSL---ADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G-~~v~i~~R~~~~a~~la~~~~~~~--~~~---~~l~~~~~~~~DilInaT~~g  452 (465)
                      +++++|+|+|++|++++..|.+.| ++|++++|++++.+.+. ..+...  .++   +++.+ .+.++|+||+++|..
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~-~~~~~~~~~d~~~~~~~~~-~~~~~d~vi~~~~~~   80 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLN-RMGVATKQVDAKDEAGLAK-ALGGFDAVISAAPFF   80 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH-TTTCEEEECCTTCHHHHHH-HTTTCSEEEECSCGG
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-hCCCcEEEecCCCHHHHHH-HHcCCCEEEECCCch
Confidence            578999999999999999999999 69999999999988776 222221  122   22333 356789999999754

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=98.08  E-value=5.1e-06  Score=80.85  Aligned_cols=74  Identities=28%  Similarity=0.374  Sum_probs=58.2

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---cccc------CCCCeeE
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---LENF------NPEDGMI  444 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~Di  444 (465)
                      +++|++||+|++ |+|++++..|++.|++|++++|+.++++++.+.++...    .|+.+   +.++      ..+..|+
T Consensus         3 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~   82 (281)
T 3zv4_A            3 LTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDT   82 (281)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCE
Confidence            578999999985 99999999999999999999999999999988876432    13221   1110      2457899


Q ss_pred             EEecCCCC
Q 012352          445 LANTTSIG  452 (465)
Q Consensus       445 lInaT~~g  452 (465)
                      |||++++.
T Consensus        83 lvnnAg~~   90 (281)
T 3zv4_A           83 LIPNAGIW   90 (281)
T ss_dssp             EECCCCCC
T ss_pred             EEECCCcC
Confidence            99999875

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=98.08  E-value=4.5e-06  Score=79.63  Aligned_cols=77  Identities=29%  Similarity=0.409  Sum_probs=59.7

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---cccc------CCCCe
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---LENF------NPEDG  442 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~  442 (465)
                      .++++|++||+|++ |+|++++..|++.|++|++++|+.+++++++++++...    .|+.+   +.+.      ..+..
T Consensus         5 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   84 (248)
T 3op4_A            5 MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGV   84 (248)
T ss_dssp             TCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHCCC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            45789999999985 99999999999999999999999999999988875421    22221   1110      23578


Q ss_pred             eEEEecCCCCC
Q 012352          443 MILANTTSIGM  453 (465)
Q Consensus       443 DilInaT~~gm  453 (465)
                      |+|||++++..
T Consensus        85 D~lv~nAg~~~   95 (248)
T 3op4_A           85 DILVNNAGITR   95 (248)
T ss_dssp             SEEEECCCCCC
T ss_pred             CEEEECCCCCC
Confidence            99999998754

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=98.08  E-value=5.5e-06  Score=78.40  Aligned_cols=74  Identities=24%  Similarity=0.359  Sum_probs=56.2

Q ss_pred             CCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---cccc------CCCCeeEE
Q 012352          380 AGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---LENF------NPEDGMIL  445 (465)
Q Consensus       380 ~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~Dil  445 (465)
                      .+|++||+|++ |+|++++..|++.|++|++++|+.++++++.++++...    .|+.+   +.++      ..+..|+|
T Consensus         2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l   81 (235)
T 3l6e_A            2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPELV   81 (235)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCSCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCCcEE
Confidence            36899999985 99999999999999999999999999999988875321    12211   1110      23578999


Q ss_pred             EecCCCCC
Q 012352          446 ANTTSIGM  453 (465)
Q Consensus       446 InaT~~gm  453 (465)
                      ||+++++.
T Consensus        82 vnnAg~~~   89 (235)
T 3l6e_A           82 LHCAGTGE   89 (235)
T ss_dssp             EEECCCC-
T ss_pred             EECCCCCC
Confidence            99998854

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=98.07  E-value=6.8e-06  Score=80.14  Aligned_cols=77  Identities=29%  Similarity=0.438  Sum_probs=60.2

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---cccc--CCCCeeEEE
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---LENF--NPEDGMILA  446 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~~--~~~~~DilI  446 (465)
                      .++++|+++|+|+ ||+|++++..|++.|++|++++|+.++++++.++++...    .|+.+   +.++  ..+..|+||
T Consensus        12 ~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~lv   91 (291)
T 3rd5_A           12 PSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGVSGADVLI   91 (291)
T ss_dssp             CCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTCCCEEEEE
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcCCCCEEE
Confidence            4578999999998 599999999999999999999999999999887775432    23322   2111  346789999


Q ss_pred             ecCCCCC
Q 012352          447 NTTSIGM  453 (465)
Q Consensus       447 naT~~gm  453 (465)
                      |++++..
T Consensus        92 ~nAg~~~   98 (291)
T 3rd5_A           92 NNAGIMA   98 (291)
T ss_dssp             ECCCCCS
T ss_pred             ECCcCCC
Confidence            9998753

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=98.07  E-value=2.2e-06  Score=89.50  Aligned_cols=73  Identities=19%  Similarity=0.268  Sum_probs=55.9

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-cc--cch---hcccccCCCCeeEEEecCCCCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-HA--LSL---ADLENFNPEDGMILANTTSIGMQ  454 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-~~--~~~---~~l~~~~~~~~DilInaT~~gm~  454 (465)
                      +++|+|+|+|++|++++.+|++.|++|++++|+.++++++++.++. ..  .++   +++.+ .+.++|+|||+||.++.
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~-~l~~~DvVIn~a~~~~~   81 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDA-EVAKHDLVISLIPYTFH   81 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHH-HHTTSSEEEECCC--CH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHH-HHcCCcEEEECCccccc
Confidence            5789999999999999999999999999999999999888776542 11  122   23333 34578999999998763

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=98.05  E-value=6.1e-06  Score=79.73  Aligned_cols=77  Identities=32%  Similarity=0.447  Sum_probs=60.1

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---cccc------CCCCe
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---LENF------NPEDG  442 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~  442 (465)
                      ..+++|++||+|+ ||+|++++..|++.|++|++++|+.+++++++++++...    .|+.+   +.++      ..+..
T Consensus        23 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  102 (266)
T 3grp_A           23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGI  102 (266)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTSC
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCCC
Confidence            4688999999998 499999999999999999999999999999988886532    12221   1110      23578


Q ss_pred             eEEEecCCCCC
Q 012352          443 MILANTTSIGM  453 (465)
Q Consensus       443 DilInaT~~gm  453 (465)
                      |+|||++++..
T Consensus       103 D~lvnnAg~~~  113 (266)
T 3grp_A          103 DILVNNAGITR  113 (266)
T ss_dssp             CEEEECCCCC-
T ss_pred             CEEEECCCCCC
Confidence            99999998753

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=98.04  E-value=1.1e-06  Score=93.72  Aligned_cols=82  Identities=17%  Similarity=0.185  Sum_probs=59.1

Q ss_pred             CCeEEEEeccHHHHHHHHHhh-------h--ccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEE--
Q 012352          344 DGKLFGYNTDYVGAISAIEDG-------L--RGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIAN--  411 (465)
Q Consensus       344 ~g~l~G~NTD~~G~~~~l~~~-------~--~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~--  411 (465)
                      +|++.|+|||+.|++..++-.       +  -++.-.+.-....+++++|+|+|+||+|..++..|+..|+ +++|++  
T Consensus       281 ~Gkl~g~~tD~~g~l~~~~la~~~~~lnL~lmrwrll~~~gq~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D  360 (598)
T 3vh1_A          281 QGKLAPRVVDLSSLLDPLKIADQSVDLNLKLMKWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG  360 (598)
T ss_dssp             TSSSSCEEEECHHHHCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             CCCCcceeecchhccCHHHHHHHHHhhhhhhhhhhccchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            799999999999999987510       0  0000000000134678999999999999999999999999 999994  


Q ss_pred             --------CCH---------HHHHHHHHHHC
Q 012352          412 --------RTY---------DRARELAETVG  425 (465)
Q Consensus       412 --------R~~---------~~a~~la~~~~  425 (465)
                              |..         .|++.+++.+.
T Consensus       361 ~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~  391 (598)
T 3vh1_A          361 TVSYSNPVRQALYNFEDCGKPKAELAAASLK  391 (598)
T ss_dssp             BCCTTSTTTSTTCCSTTCSSBHHHHHHHHHH
T ss_pred             cccccccccccccchhhcCcHHHHHHHHHHH
Confidence                    442         57777776653

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=98.03  E-value=7.7e-06  Score=78.73  Aligned_cols=77  Identities=26%  Similarity=0.297  Sum_probs=58.4

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC----Cc-c----cchhc---cccc------
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG----GH-A----LSLAD---LENF------  437 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~----~~-~----~~~~~---l~~~------  437 (465)
                      .++++|++||+|++ |+|++++..|++.|++|++++|+.++++++++++.    .. .    .|+.+   +.++      
T Consensus         4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (265)
T 3lf2_A            4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACER   83 (265)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence            45789999999985 99999999999999999999999999888877652    11 1    13221   1110      


Q ss_pred             CCCCeeEEEecCCCCC
Q 012352          438 NPEDGMILANTTSIGM  453 (465)
Q Consensus       438 ~~~~~DilInaT~~gm  453 (465)
                      ..+..|+|||++++..
T Consensus        84 ~~g~id~lvnnAg~~~   99 (265)
T 3lf2_A           84 TLGCASILVNNAGQGR   99 (265)
T ss_dssp             HHCSCSEEEECCCCCC
T ss_pred             HcCCCCEEEECCCCCC
Confidence            2457899999998754

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=98.03  E-value=1.1e-05  Score=76.64  Aligned_cols=77  Identities=25%  Similarity=0.362  Sum_probs=58.7

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---cccc--CCCCeeEEE
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---LENF--NPEDGMILA  446 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~~--~~~~~DilI  446 (465)
                      ..+++|++||+|+ ||+|++++..|++.|++|++++|+.++.+++.+++....    .++.+   +.+.  ..+..|+||
T Consensus        10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li   89 (249)
T 3f9i_A           10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKTSNLDILV   89 (249)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTCSCCSEEE
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhcCCCCEEE
Confidence            5678999999998 599999999999999999999999999999988876432    22221   1110  345789999


Q ss_pred             ecCCCCC
Q 012352          447 NTTSIGM  453 (465)
Q Consensus       447 naT~~gm  453 (465)
                      |++++..
T Consensus        90 ~~Ag~~~   96 (249)
T 3f9i_A           90 CNAGITS   96 (249)
T ss_dssp             ECCC---
T ss_pred             ECCCCCC
Confidence            9998754

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=98.02  E-value=6.3e-06  Score=79.97  Aligned_cols=76  Identities=28%  Similarity=0.400  Sum_probs=57.6

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---cccc------CCCCee
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---LENF------NPEDGM  443 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~D  443 (465)
                      .+.+|++||+|+ ||+|++++..|++.|++|++++|+.+++++++++++...    .|+.+   +.++      ..+..|
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD  104 (272)
T 4dyv_A           25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGRVD  104 (272)
T ss_dssp             ---CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            467899999998 599999999999999999999999999999998886432    23221   1110      235799


Q ss_pred             EEEecCCCCC
Q 012352          444 ILANTTSIGM  453 (465)
Q Consensus       444 ilInaT~~gm  453 (465)
                      +|||++++..
T Consensus       105 ~lVnnAg~~~  114 (272)
T 4dyv_A          105 VLFNNAGTGA  114 (272)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEECCCCCC
Confidence            9999998753

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=98.02  E-value=9e-06  Score=77.77  Aligned_cols=74  Identities=19%  Similarity=0.235  Sum_probs=57.5

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---c-------cccCC
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---L-------ENFNP  439 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l-------~~~~~  439 (465)
                      ++++|++||+|++ |+|++++..|++.|++|++++|+.++++++++++.   ...    .|+.+   +       .+ . 
T Consensus         4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~-~-   81 (252)
T 3h7a_A            4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADA-H-   81 (252)
T ss_dssp             -CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH-H-
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHh-h-
Confidence            4678999999985 99999999999999999999999999988887762   221    23221   1       12 3 


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +..|+|||++++..
T Consensus        82 g~id~lv~nAg~~~   95 (252)
T 3h7a_A           82 APLEVTIFNVGANV   95 (252)
T ss_dssp             SCEEEEEECCCCCC
T ss_pred             CCceEEEECCCcCC
Confidence            57899999998764

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=98.02  E-value=1.1e-05  Score=77.85  Aligned_cols=78  Identities=24%  Similarity=0.377  Sum_probs=58.5

Q ss_pred             ccccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH----CCcc----cchhc---cccc------
Q 012352          376 SSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV----GGHA----LSLAD---LENF------  437 (465)
Q Consensus       376 ~~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~----~~~~----~~~~~---l~~~------  437 (465)
                      ...+++|++||+|+ ||+|++++..|++.|++|++++|+.++++++++++    +...    .|+.+   +.+.      
T Consensus        16 ~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~   95 (267)
T 1vl8_A           16 VFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKE   95 (267)
T ss_dssp             -CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            45688999999998 59999999999999999999999999888877665    3321    13221   1110      


Q ss_pred             CCCCeeEEEecCCCCC
Q 012352          438 NPEDGMILANTTSIGM  453 (465)
Q Consensus       438 ~~~~~DilInaT~~gm  453 (465)
                      ..+..|+|||+++...
T Consensus        96 ~~g~iD~lvnnAg~~~  111 (267)
T 1vl8_A           96 KFGKLDTVVNAAGINR  111 (267)
T ss_dssp             HHSCCCEEEECCCCCC
T ss_pred             HcCCCCEEEECCCcCC
Confidence            2357899999998754

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=98.01  E-value=1.4e-06  Score=83.61  Aligned_cols=71  Identities=25%  Similarity=0.306  Sum_probs=52.3

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchh---ccccc--CCCCeeEEEec
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLA---DLENF--NPEDGMILANT  448 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~---~l~~~--~~~~~DilIna  448 (465)
                      ++||++||+|++ |+|++++..|+++|++|++++|+.++.++..   +...    .|+.   ++.+.  .+++.|+|||+
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLVNN   85 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPR---HPRIRREELDITDSQRLQRLFEALPRLDVLVNN   85 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSCC---CTTEEEEECCTTCHHHHHHHHHHCSCCSEEEEC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhhh---cCCeEEEEecCCCHHHHHHHHHhcCCCCEEEEC
Confidence            589999999996 9999999999999999999999977654321   1111    1221   12110  46789999999


Q ss_pred             CCCC
Q 012352          449 TSIG  452 (465)
Q Consensus       449 T~~g  452 (465)
                      +++.
T Consensus        86 AGi~   89 (242)
T 4b79_A           86 AGIS   89 (242)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9874

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=98.01  E-value=1.6e-05  Score=75.74  Aligned_cols=76  Identities=36%  Similarity=0.507  Sum_probs=57.4

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH---CCcc----cchhc---cccc------CCC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHA----LSLAD---LENF------NPE  440 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~---~~~~----~~~~~---l~~~------~~~  440 (465)
                      .+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++++++   +...    .|+.+   +.+.      ..+
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g   83 (247)
T 2jah_A            4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALG   83 (247)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            367899999998 59999999999999999999999999988887776   2221    13221   1110      235


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+|||++++..
T Consensus        84 ~id~lv~nAg~~~   96 (247)
T 2jah_A           84 GLDILVNNAGIML   96 (247)
T ss_dssp             CCSEEEECCCCCC
T ss_pred             CCCEEEECCCCCC
Confidence            7899999998763

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=98.01  E-value=8.3e-06  Score=78.82  Aligned_cols=75  Identities=24%  Similarity=0.418  Sum_probs=57.1

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---cccc------CCCC
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---LENF------NPED  441 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l~~~------~~~~  441 (465)
                      +.+|++||+|++ |+|++++..|++.|++|++++|+.++++++++++.   ...    .|+.+   +.++      ..+.
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   81 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGR   81 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            357899999985 99999999999999999999999999999888773   221    23221   1110      2357


Q ss_pred             eeEEEecCCCCC
Q 012352          442 GMILANTTSIGM  453 (465)
Q Consensus       442 ~DilInaT~~gm  453 (465)
                      .|+|||++++..
T Consensus        82 iD~lVnnAG~~~   93 (264)
T 3tfo_A           82 IDVLVNNAGVMP   93 (264)
T ss_dssp             CCEEEECCCCCC
T ss_pred             CCEEEECCCCCC
Confidence            899999998753

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=98.00  E-value=1.5e-05  Score=76.19  Aligned_cols=76  Identities=21%  Similarity=0.307  Sum_probs=57.7

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC----c--c--cch--hc---cccc-----
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG----H--A--LSL--AD---LENF-----  437 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~----~--~--~~~--~~---l~~~-----  437 (465)
                      ..+++|+++|+|++ |+|++++..|++.|++|++++|+.++++++++++..    .  .  .++  .+   +.+.     
T Consensus         8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   87 (252)
T 3f1l_A            8 DLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIA   87 (252)
T ss_dssp             TTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHH
Confidence            45789999999985 999999999999999999999999998888776521    1  1  232  11   1110     


Q ss_pred             -CCCCeeEEEecCCCC
Q 012352          438 -NPEDGMILANTTSIG  452 (465)
Q Consensus       438 -~~~~~DilInaT~~g  452 (465)
                       ..+..|+|||++++.
T Consensus        88 ~~~g~id~lv~nAg~~  103 (252)
T 3f1l_A           88 VNYPRLDGVLHNAGLL  103 (252)
T ss_dssp             HHCSCCSEEEECCCCC
T ss_pred             HhCCCCCEEEECCccC
Confidence             346799999999874

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.98  E-value=2e-05  Score=74.01  Aligned_cols=73  Identities=25%  Similarity=0.397  Sum_probs=55.1

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC----Ccc----cchh---ccccc------CCCCe
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG----GHA----LSLA---DLENF------NPEDG  442 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~----~~~----~~~~---~l~~~------~~~~~  442 (465)
                      +|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++++++.    ...    .|+.   ++.++      ..+..
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   81 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGDV   81 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCCC
Confidence            689999998 599999999999999999999999999888876652    221    1322   12110      23478


Q ss_pred             eEEEecCCCCC
Q 012352          443 MILANTTSIGM  453 (465)
Q Consensus       443 DilInaT~~gm  453 (465)
                      |+|||+++++.
T Consensus        82 d~li~~Ag~~~   92 (235)
T 3l77_A           82 DVVVANAGLGY   92 (235)
T ss_dssp             SEEEECCCCCC
T ss_pred             CEEEECCcccc
Confidence            99999998764

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.98  E-value=7.5e-06  Score=79.15  Aligned_cols=76  Identities=26%  Similarity=0.333  Sum_probs=59.4

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---cccc------CCCCe
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---LENF------NPEDG  442 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~  442 (465)
                      ..+++|++||+|+ ||+|++++..|++.|++|++++|+.+++++++++++...    .|+.+   +.++      ..+..
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   86 (271)
T 3tzq_B            7 AELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTFGRL   86 (271)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            3578999999998 599999999999999999999999999999888886432    23221   1110      23578


Q ss_pred             eEEEecCCCC
Q 012352          443 MILANTTSIG  452 (465)
Q Consensus       443 DilInaT~~g  452 (465)
                      |+|||+++..
T Consensus        87 d~lv~nAg~~   96 (271)
T 3tzq_B           87 DIVDNNAAHS   96 (271)
T ss_dssp             CEEEECCCCC
T ss_pred             CEEEECCCCC
Confidence            9999999876

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.98  E-value=1e-05  Score=77.48  Aligned_cols=76  Identities=25%  Similarity=0.385  Sum_probs=58.5

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC---cc----cchhc---cccc------CCC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG---HA----LSLAD---LENF------NPE  440 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~---~~----~~~~~---l~~~------~~~  440 (465)
                      .+++|++||+|+ ||+|++++..|++.|++|++++|+.++++++.+++..   ..    .|+.+   +.+.      ..+
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   82 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFG   82 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            467899999998 5999999999999999999999999999999888742   11    12221   1110      235


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+|||++++..
T Consensus        83 ~id~lv~nAg~~~   95 (257)
T 3imf_A           83 RIDILINNAAGNF   95 (257)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CCCEEEECCCCCC
Confidence            7899999998653

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.97  E-value=1.4e-05  Score=76.25  Aligned_cols=77  Identities=23%  Similarity=0.329  Sum_probs=57.6

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC------Cc--c--cchhc---cccc------
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG------GH--A--LSLAD---LENF------  437 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~------~~--~--~~~~~---l~~~------  437 (465)
                      .+++|++||+|+ ||+|++++..|++.|++|++++|+.++++++++++.      ..  .  .|+.+   +.++      
T Consensus         4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (250)
T 3nyw_A            4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ   83 (250)
T ss_dssp             -CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence            467899999998 499999999999999999999999999988877652      11  1  23221   1110      


Q ss_pred             CCCCeeEEEecCCCCCC
Q 012352          438 NPEDGMILANTTSIGMQ  454 (465)
Q Consensus       438 ~~~~~DilInaT~~gm~  454 (465)
                      ..+..|+|||++++...
T Consensus        84 ~~g~iD~lvnnAg~~~~  100 (250)
T 3nyw_A           84 KYGAVDILVNAAAMFMD  100 (250)
T ss_dssp             HHCCEEEEEECCCCCCC
T ss_pred             hcCCCCEEEECCCcCCC
Confidence            23579999999988643

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.97  E-value=1.2e-05  Score=76.50  Aligned_cols=75  Identities=29%  Similarity=0.312  Sum_probs=57.0

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchhc---cccc------CCCCeeEEE
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLAD---LENF------NPEDGMILA  446 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~~---l~~~------~~~~~DilI  446 (465)
                      +++|+++|+|+ ||+|++++..|++.|++|++++|+.++.++++++++...  .|+.+   +.+.      ..+..|+||
T Consensus         3 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv   82 (245)
T 1uls_A            3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVV   82 (245)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            56899999998 599999999999999999999999999888877664322  23221   1110      235689999


Q ss_pred             ecCCCCC
Q 012352          447 NTTSIGM  453 (465)
Q Consensus       447 naT~~gm  453 (465)
                      |+++...
T Consensus        83 n~Ag~~~   89 (245)
T 1uls_A           83 HYAGITR   89 (245)
T ss_dssp             ECCCCCC
T ss_pred             ECCCCCC
Confidence            9998753

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.97  E-value=2e-05  Score=75.42  Aligned_cols=76  Identities=30%  Similarity=0.500  Sum_probs=57.1

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH----CCcc----cchhc---cccc------CC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV----GGHA----LSLAD---LENF------NP  439 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~----~~~~----~~~~~---l~~~------~~  439 (465)
                      ++++|++||+|+ ||+|++++..|++.|++|++++|+.++.+++++++    +...    .|+.+   +.+.      ..
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (263)
T 3ai3_A            4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSF   83 (263)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            467899999998 59999999999999999999999999888877665    3221    13221   1110      23


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +..|+|||+++...
T Consensus        84 g~id~lv~~Ag~~~   97 (263)
T 3ai3_A           84 GGADILVNNAGTGS   97 (263)
T ss_dssp             SSCSEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            57899999998753

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.97  E-value=1.5e-05  Score=76.52  Aligned_cols=77  Identities=18%  Similarity=0.237  Sum_probs=59.0

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC----cc----cchhc---cccc------C
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG----HA----LSLAD---LENF------N  438 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~----~~----~~~~~---l~~~------~  438 (465)
                      .++++|++||+|+ ||+|++++..|++.|++|++++|+.++++++++++..    ..    .|+.+   +.++      .
T Consensus         6 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   85 (262)
T 3pk0_A            6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEE   85 (262)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            4678999999998 5999999999999999999999999999988877631    11    12221   1110      2


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|+|||++++..
T Consensus        86 ~g~id~lvnnAg~~~  100 (262)
T 3pk0_A           86 FGGIDVVCANAGVFP  100 (262)
T ss_dssp             HSCCSEEEECCCCCC
T ss_pred             hCCCCEEEECCCCCC
Confidence            357899999998754

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=97.97  E-value=5.5e-06  Score=79.27  Aligned_cols=76  Identities=21%  Similarity=0.227  Sum_probs=49.7

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---cccc------CCCCee
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---LENF------NPEDGM  443 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~D  443 (465)
                      .+++|++||+|++ |+|++++..|++.|++|++++|+.++.++++++++...    .|+.+   +.+.      ..+..|
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   83 (257)
T 3tpc_A            4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEFGHVH   83 (257)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            4678999999984 99999999999999999999999998888887775421    22221   1110      235789


Q ss_pred             EEEecCCCCC
Q 012352          444 ILANTTSIGM  453 (465)
Q Consensus       444 ilInaT~~gm  453 (465)
                      +|||+++...
T Consensus        84 ~lv~nAg~~~   93 (257)
T 3tpc_A           84 GLVNCAGTAP   93 (257)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEECCCCCC
Confidence            9999998763

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=97.97  E-value=1.1e-05  Score=78.21  Aligned_cols=77  Identities=26%  Similarity=0.381  Sum_probs=59.2

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---cccc------CC
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---LENF------NP  439 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l~~~------~~  439 (465)
                      .++++|++||+|++ |+|++++..|++.|++|++++|+.++++++++++.   ...    .|+.+   +.+.      ..
T Consensus        22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  101 (271)
T 4ibo_A           22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQG  101 (271)
T ss_dssp             GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence            46889999999984 99999999999999999999999999998887762   221    12221   1110      34


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +..|+|||++++..
T Consensus       102 g~iD~lv~nAg~~~  115 (271)
T 4ibo_A          102 IDVDILVNNAGIQF  115 (271)
T ss_dssp             CCCCEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            57999999998764

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.96  E-value=1.3e-05  Score=76.48  Aligned_cols=76  Identities=21%  Similarity=0.294  Sum_probs=58.3

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---cccc------CCCCee
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---LENF------NPEDGM  443 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~D  443 (465)
                      .+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.++++++++...    .|+.+   +.+.      ..+..|
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   82 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLN   82 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            467899999998 599999999999999999999999999998888875321    23221   1110      235689


Q ss_pred             EEEecCCCCC
Q 012352          444 ILANTTSIGM  453 (465)
Q Consensus       444 ilInaT~~gm  453 (465)
                      +|||+++...
T Consensus        83 ~lv~~Ag~~~   92 (253)
T 1hxh_A           83 VLVNNAGILL   92 (253)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEECCCCCC
Confidence            9999998753

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=97.96  E-value=1.4e-05  Score=75.97  Aligned_cols=75  Identities=28%  Similarity=0.388  Sum_probs=57.9

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---cccc------CC
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---LENF------NP  439 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l~~~------~~  439 (465)
                      ..+++|++||+|+ ||+|++++..|++.|++|++++|+.++.+++.+++.   ...    .|+.+   +.++      ..
T Consensus         5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T 3qiv_A            5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEF   84 (253)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            5678999999998 599999999999999999999999999999887762   211    12221   1110      23


Q ss_pred             CCeeEEEecCCC
Q 012352          440 EDGMILANTTSI  451 (465)
Q Consensus       440 ~~~DilInaT~~  451 (465)
                      +..|+|||++++
T Consensus        85 g~id~li~~Ag~   96 (253)
T 3qiv_A           85 GGIDYLVNNAAI   96 (253)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            578999999987

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=97.96  E-value=1.8e-05  Score=76.81  Aligned_cols=135  Identities=13%  Similarity=0.118  Sum_probs=84.1

Q ss_pred             eeecC-CCccccccHHHHHHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCchHHHhhhccccCHHH
Q 012352          256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVA  329 (465)
Q Consensus       256 ~~~iG-~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K~~v~~~~d~~~~~A  329 (465)
                      .-++| +|-+++.- ..-.+..++.|+ .....+.-    +++.+.++.+ .++.+.|+.|..|.-..+    |+    -
T Consensus        32 vilvg~dpaS~~Yv-~~k~k~~~~~Gi-~~~~~lp~~~s~~ell~~I~~lN~D~~v~GIlvqlPLP~~i----d~----~  101 (276)
T 3ngx_A           32 LIQIGDNEAASIYA-RAKIRRGKKIGI-AVDLEKYDDISMKDLLKRIDDLAKDPQINGIMIENPLPKGF----DY----Y  101 (276)
T ss_dssp             EEEESCCHHHHHHH-HHHHHHHHHHTC-EEEEEEESSCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTC----CH----H
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHCCe-EEEEECCCCCCHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC----CH----H
Confidence            33556 44444333 233667899999 76554432    3566667777 578999999999953211    10    1


Q ss_pred             HhccceeeEEEeccCCeEEEEe-------------ccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccch-hHHH
Q 012352          330 KSIGAVNCIIRRQSDGKLFGYN-------------TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKA  395 (465)
Q Consensus       330 ~~~gavNtv~~~~~~g~l~G~N-------------TD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg-~g~a  395 (465)
                      +.+.+++.-. +. || ++-+|             .--.|++..|++.            . ++||+++|+|.|+ +|+.
T Consensus       102 ~v~~~I~p~K-DV-DG-~~p~n~G~l~~g~~~~~PcTp~gv~~lL~~~------------~-l~Gk~vvVvG~s~iVG~p  165 (276)
T 3ngx_A          102 EIVRNIPYYK-DV-DA-LSPYNQGLIALNREFLVPATPRAVIDIMDYY------------G-YHENTVTIVNRSPVVGRP  165 (276)
T ss_dssp             HHHTTSCGGG-BT-TC-CSHHHHHHHHTTCCSSCCHHHHHHHHHHHHH------------T-CCSCEEEEECCCTTTHHH
T ss_pred             HHHhhCCCCC-cc-cC-CCccchhhhhcCCCCCCCCcHHHHHHHHHHh------------C-cCCCEEEEEcCChHHHHH
Confidence            1122222211 00 11 11111             1136788877763            2 7899999999997 8999


Q ss_pred             HHHHHHHCCCeEEEEECCHHH
Q 012352          396 LAYGAKAKGARVVIANRTYDR  416 (465)
Q Consensus       396 i~~~L~~~G~~v~i~~R~~~~  416 (465)
                      ++..|...|++|++++|+...
T Consensus       166 lA~lL~~~gAtVtv~~~~t~~  186 (276)
T 3ngx_A          166 LSMMLLNRNYTVSVCHSKTKD  186 (276)
T ss_dssp             HHHHHHHTTCEEEEECTTCSC
T ss_pred             HHHHHHHCCCeEEEEeCCccc
Confidence            999999999999999885433

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=97.95  E-value=3.1e-05  Score=74.91  Aligned_cols=77  Identities=22%  Similarity=0.303  Sum_probs=59.5

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---ccc-----cCCCCee
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---LEN-----FNPEDGM  443 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~-----~~~~~~D  443 (465)
                      .++++|++||+|++ |+|++++..|++.|++|++++|+.++.++++++++...    .|+.+   +.+     ...+..|
T Consensus        26 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~id  105 (281)
T 3ppi_A           26 KQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQLGRLR  105 (281)
T ss_dssp             GGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTSSEEE
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            45789999999985 99999999999999999999999999999999886532    22211   111     0345789


Q ss_pred             EEEec-CCCCC
Q 012352          444 ILANT-TSIGM  453 (465)
Q Consensus       444 ilIna-T~~gm  453 (465)
                      ++||+ ++.+.
T Consensus       106 ~lv~~aag~~~  116 (281)
T 3ppi_A          106 YAVVAHGGFGV  116 (281)
T ss_dssp             EEEECCCCCCC
T ss_pred             eEEEccCcccc
Confidence            99999 55554

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.95  E-value=1e-05  Score=77.30  Aligned_cols=75  Identities=29%  Similarity=0.349  Sum_probs=57.1

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---cccc------CCCCeeE
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---LENF------NPEDGMI  444 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~Di  444 (465)
                      +++|+++|+|+ ||+|++++..|++.|++|++++|+.++.++++++++...    .|+.+   +.+.      ..+..|+
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~   82 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDG   82 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            56899999998 599999999999999999999999999888887764321    22221   1110      2347899


Q ss_pred             EEecCCCCC
Q 012352          445 LANTTSIGM  453 (465)
Q Consensus       445 lInaT~~gm  453 (465)
                      |||+++...
T Consensus        83 lv~nAg~~~   91 (254)
T 1hdc_A           83 LVNNAGIST   91 (254)
T ss_dssp             EEECCCCCC
T ss_pred             EEECCCCCC
Confidence            999998753

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=97.95  E-value=7.1e-06  Score=79.92  Aligned_cols=77  Identities=26%  Similarity=0.379  Sum_probs=54.8

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC----c--c--cchhc---cccc------C
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG----H--A--LSLAD---LENF------N  438 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~----~--~--~~~~~---l~~~------~  438 (465)
                      ..+++|++||+|+ ||+|++++..|++.|++|++++|+.++.+++++++..    .  .  .|+.+   +.++      .
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  108 (281)
T 4dry_A           29 GSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAE  108 (281)
T ss_dssp             -----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            3578999999998 5999999999999999999999999998888776631    1  1  23221   1110      2


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|+|||++++..
T Consensus       109 ~g~iD~lvnnAG~~~  123 (281)
T 4dry_A          109 FARLDLLVNNAGSNV  123 (281)
T ss_dssp             HSCCSEEEECCCCCC
T ss_pred             cCCCCEEEECCCCCC
Confidence            357899999998753

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=97.95  E-value=1.1e-05  Score=79.11  Aligned_cols=77  Identities=19%  Similarity=0.252  Sum_probs=59.4

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC----cc----cchhc---cccc------C
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG----HA----LSLAD---LENF------N  438 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~----~~----~~~~~---l~~~------~  438 (465)
                      ..+++|++||+|++ |+|++++..|++.|++|++++|+.++++++++++..    ..    .|+.+   +.++      .
T Consensus        37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  116 (293)
T 3rih_A           37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDA  116 (293)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            46789999999985 999999999999999999999999999998888742    11    12221   1110      2


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|+|||++++..
T Consensus       117 ~g~iD~lvnnAg~~~  131 (293)
T 3rih_A          117 FGALDVVCANAGIFP  131 (293)
T ss_dssp             HSCCCEEEECCCCCC
T ss_pred             cCCCCEEEECCCCCC
Confidence            457899999998753

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.94  E-value=1.6e-05  Score=76.37  Aligned_cols=76  Identities=17%  Similarity=0.289  Sum_probs=56.7

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH-----CCcc----cchhc---cccc------
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV-----GGHA----LSLAD---LENF------  437 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~-----~~~~----~~~~~---l~~~------  437 (465)
                      ..+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++     +...    .|+.+   +.+.      
T Consensus         9 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   88 (267)
T 1iy8_A            9 TRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE   88 (267)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            4578999999998 59999999999999999999999999888877665     3221    13221   1110      


Q ss_pred             CCCCeeEEEecCCCC
Q 012352          438 NPEDGMILANTTSIG  452 (465)
Q Consensus       438 ~~~~~DilInaT~~g  452 (465)
                      ..+..|+|||++++.
T Consensus        89 ~~g~id~lv~nAg~~  103 (267)
T 1iy8_A           89 RFGRIDGFFNNAGIE  103 (267)
T ss_dssp             HHSCCSEEEECCCCC
T ss_pred             HcCCCCEEEECCCcC
Confidence            235789999999875

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.94  E-value=9.1e-06  Score=78.94  Aligned_cols=77  Identities=26%  Similarity=0.345  Sum_probs=58.7

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---cccc------CC
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---LENF------NP  439 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l~~~------~~  439 (465)
                      .++++|++||+|+ ||+|++++..|++.|++|++++|+.++++++++++.   ...    .|+.+   +.++      ..
T Consensus        28 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~  107 (276)
T 3r1i_A           28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGEL  107 (276)
T ss_dssp             GCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4578999999998 599999999999999999999999999888887763   111    12221   1110      23


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +..|+|||++++..
T Consensus       108 g~iD~lvnnAg~~~  121 (276)
T 3r1i_A          108 GGIDIAVCNAGIVS  121 (276)
T ss_dssp             SCCSEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            57899999998764

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=97.94  E-value=1.5e-05  Score=76.72  Aligned_cols=77  Identities=29%  Similarity=0.322  Sum_probs=58.2

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-----cc----cchhc---cccc--CCCC
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-----HA----LSLAD---LENF--NPED  441 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-----~~----~~~~~---l~~~--~~~~  441 (465)
                      ..+++|++||+|+ ||+|++++..|++.|++|++++|+.++.+++++++..     ..    .++.+   +.+.  ..+.
T Consensus         6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~   85 (267)
T 3t4x_A            6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPK   85 (267)
T ss_dssp             CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCC
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCC
Confidence            3578999999998 5999999999999999999999999998888776631     11    12211   1110  3467


Q ss_pred             eeEEEecCCCCC
Q 012352          442 GMILANTTSIGM  453 (465)
Q Consensus       442 ~DilInaT~~gm  453 (465)
                      .|+|||++++..
T Consensus        86 id~lv~nAg~~~   97 (267)
T 3t4x_A           86 VDILINNLGIFE   97 (267)
T ss_dssp             CSEEEECCCCCC
T ss_pred             CCEEEECCCCCC
Confidence            999999998754

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=97.93  E-value=3e-05  Score=75.21  Aligned_cols=77  Identities=26%  Similarity=0.374  Sum_probs=58.8

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC--cc----cchhc---cccc------CCC
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG--HA----LSLAD---LENF------NPE  440 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~--~~----~~~~~---l~~~------~~~  440 (465)
                      .++++|+++|+|+ ||+|++++..|++.|++|++++|+.++++++++++..  ..    .|+.+   +.+.      ..+
T Consensus        25 ~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (276)
T 2b4q_A           25 FSLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSA  104 (276)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCS
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            4578999999998 5999999999999999999999999998888887742  11    12221   1110      245


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+|||+++...
T Consensus       105 ~iD~lvnnAg~~~  117 (276)
T 2b4q_A          105 RLDILVNNAGTSW  117 (276)
T ss_dssp             CCSEEEECCCCCC
T ss_pred             CCCEEEECCCCCC
Confidence            7899999998754

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=97.93  E-value=1.5e-05  Score=76.79  Aligned_cols=77  Identities=26%  Similarity=0.361  Sum_probs=58.3

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH----CCcc----cchhc---cccc------C
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV----GGHA----LSLAD---LENF------N  438 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~----~~~~----~~~~~---l~~~------~  438 (465)
                      ..+++|++||+|+ ||+|++++..|++.|++|++++|+.++++++++++    +...    .|+.+   +.++      .
T Consensus        16 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   95 (266)
T 4egf_A           16 LRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEA   95 (266)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            4578999999998 59999999999999999999999999988877665    3221    23221   1110      2


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|+|||++++..
T Consensus        96 ~g~id~lv~nAg~~~  110 (266)
T 4egf_A           96 FGGLDVLVNNAGISH  110 (266)
T ss_dssp             HTSCSEEEEECCCCC
T ss_pred             cCCCCEEEECCCcCC
Confidence            357899999998764

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=97.93  E-value=1.8e-05  Score=75.73  Aligned_cols=77  Identities=27%  Similarity=0.337  Sum_probs=58.9

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---cccc------CC
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---LENF------NP  439 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l~~~------~~  439 (465)
                      ..+++|++||+|++ |+|++++..|++.|++|++++|+.++++++++++.   ...    .|+.+   +.+.      ..
T Consensus         8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   87 (256)
T 3gaf_A            8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQF   87 (256)
T ss_dssp             TCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            46889999999984 99999999999999999999999999988887762   221    12221   1110      23


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +..|+|||+++...
T Consensus        88 g~id~lv~nAg~~~  101 (256)
T 3gaf_A           88 GKITVLVNNAGGGG  101 (256)
T ss_dssp             SCCCEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            57899999998764

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=97.93  E-value=1.8e-05  Score=76.73  Aligned_cols=76  Identities=24%  Similarity=0.266  Sum_probs=57.3

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH----CCcc----cchhc---cccc------CC
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV----GGHA----LSLAD---LENF------NP  439 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~----~~~~----~~~~~---l~~~------~~  439 (465)
                      .+++|++||+|++ |+|++++..|++.|++|++++|+.++.+++++++    +...    .|+.+   +.+.      ..
T Consensus        24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~  103 (277)
T 4fc7_A           24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEF  103 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4789999999985 9999999999999999999999999888877665    3221    13221   1110      23


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +..|+|||+++...
T Consensus       104 g~id~lv~nAg~~~  117 (277)
T 4fc7_A          104 GRIDILINCAAGNF  117 (277)
T ss_dssp             SCCCEEEECCCCCC
T ss_pred             CCCCEEEECCcCCC
Confidence            57899999998653

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=97.93  E-value=2.2e-05  Score=74.41  Aligned_cols=77  Identities=25%  Similarity=0.337  Sum_probs=58.3

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc-----cchhc---cccc-----CCCCe
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA-----LSLAD---LENF-----NPEDG  442 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~-----~~~~~---l~~~-----~~~~~  442 (465)
                      ..+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.++++...     .++.+   +.+.     ..+..
T Consensus         7 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~i   86 (254)
T 2wsb_A            7 FRLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAPV   86 (254)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHHHSCC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHHhhCCC
Confidence            3577899999998 599999999999999999999999999888887764321     12221   1110     12578


Q ss_pred             eEEEecCCCCC
Q 012352          443 MILANTTSIGM  453 (465)
Q Consensus       443 DilInaT~~gm  453 (465)
                      |+|||+++...
T Consensus        87 d~li~~Ag~~~   97 (254)
T 2wsb_A           87 SILVNSAGIAR   97 (254)
T ss_dssp             CEEEECCCCCC
T ss_pred             cEEEECCccCC
Confidence            99999998754

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=97.93  E-value=2.1e-06  Score=83.18  Aligned_cols=73  Identities=19%  Similarity=0.131  Sum_probs=52.1

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccch---h-------cccccCCCCeeEE
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL---A-------DLENFNPEDGMIL  445 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~---~-------~l~~~~~~~~Dil  445 (465)
                      .+++||++||+|++ |+|++++..|+++|++|++++|+.++  .+.+.+. ...|+   +       .+.+ .++..|++
T Consensus         7 ~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~--~~~~~~~-~~~Dv~~~~~v~~~~~~~~~-~~G~iDil   82 (261)
T 4h15_A            7 LNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPE--GLPEELF-VEADLTTKEGCAIVAEATRQ-RLGGVDVI   82 (261)
T ss_dssp             CCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCT--TSCTTTE-EECCTTSHHHHHHHHHHHHH-HTSSCSEE
T ss_pred             cCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchh--CCCcEEE-EEcCCCCHHHHHHHHHHHHH-HcCCCCEE
Confidence            46899999999996 99999999999999999999997542  1111111 01122   1       1122 46789999


Q ss_pred             EecCCCCC
Q 012352          446 ANTTSIGM  453 (465)
Q Consensus       446 InaT~~gm  453 (465)
                      ||++++..
T Consensus        83 VnnAG~~~   90 (261)
T 4h15_A           83 VHMLGGSS   90 (261)
T ss_dssp             EECCCCCC
T ss_pred             EECCCCCc
Confidence            99998754

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=97.92  E-value=1.6e-05  Score=76.16  Aligned_cols=77  Identities=26%  Similarity=0.378  Sum_probs=58.9

Q ss_pred             cccCCcEEEEEcc-c-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC----cc----cchhc---cccc------
Q 012352          377 SALAGKLFVVIGA-G-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG----HA----LSLAD---LENF------  437 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-G-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~----~~----~~~~~---l~~~------  437 (465)
                      ..+++|++||+|+ | |+|++++..|++.|++|++++|+.++.+++.+++..    ..    .|+.+   +.++      
T Consensus        18 ~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~   97 (266)
T 3o38_A           18 GLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVE   97 (266)
T ss_dssp             STTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHH
Confidence            3578999999999 7 899999999999999999999999999888887721    11    23221   1110      


Q ss_pred             CCCCeeEEEecCCCCC
Q 012352          438 NPEDGMILANTTSIGM  453 (465)
Q Consensus       438 ~~~~~DilInaT~~gm  453 (465)
                      ..+..|+|||++++..
T Consensus        98 ~~g~id~li~~Ag~~~  113 (266)
T 3o38_A           98 KAGRLDVLVNNAGLGG  113 (266)
T ss_dssp             HHSCCCEEEECCCCCC
T ss_pred             HhCCCcEEEECCCcCC
Confidence            2357899999998754

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=97.92  E-value=1.5e-05  Score=75.73  Aligned_cols=72  Identities=18%  Similarity=0.054  Sum_probs=54.8

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEE-E--CCHHHHHHHHHHH-CCcccchhc-------ccccCCCCeeEEEec
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIA-N--RTYDRARELAETV-GGHALSLAD-------LENFNPEDGMILANT  448 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~-~--R~~~~a~~la~~~-~~~~~~~~~-------l~~~~~~~~DilIna  448 (465)
                      +|+++|+|+ ||+|++++..|++.|++|+++ +  |+.++.+++.+++ +....+.++       +.+ ..+..|+|||+
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~g~iD~lv~~   79 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGTIALAEQKPERLVDATLQ-HGEAIDTIVSN   79 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHSTTEEECCCCCGGGHHHHHGG-GSSCEEEEEEC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH-HcCCCCEEEEC
Confidence            478999998 599999999999999999999 7  9999998888776 222122222       222 34679999999


Q ss_pred             CCCCC
Q 012352          449 TSIGM  453 (465)
Q Consensus       449 T~~gm  453 (465)
                      +++..
T Consensus        80 Ag~~~   84 (244)
T 1zmo_A           80 DYIPR   84 (244)
T ss_dssp             CCCCT
T ss_pred             CCcCC
Confidence            98764

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.92  E-value=2.6e-05  Score=75.30  Aligned_cols=77  Identities=25%  Similarity=0.244  Sum_probs=57.8

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH---CCcc----cchhc---cccc------CC
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHA----LSLAD---LENF------NP  439 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~---~~~~----~~~~~---l~~~------~~  439 (465)
                      ..+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++   +...    .|+.+   +.+.      ..
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   96 (273)
T 1ae1_A           17 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF   96 (273)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            3578899999998 59999999999999999999999999888877665   2221    12211   1110      23


Q ss_pred             -CCeeEEEecCCCCC
Q 012352          440 -EDGMILANTTSIGM  453 (465)
Q Consensus       440 -~~~DilInaT~~gm  453 (465)
                       +..|+|||+++...
T Consensus        97 ~g~id~lv~nAg~~~  111 (273)
T 1ae1_A           97 DGKLNILVNNAGVVI  111 (273)
T ss_dssp             TSCCCEEEECCCCCC
T ss_pred             CCCCcEEEECCCCCC
Confidence             67999999998754

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.92  E-value=2.7e-05  Score=73.73  Aligned_cols=74  Identities=28%  Similarity=0.321  Sum_probs=57.2

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---c-------cccCCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---L-------ENFNPE  440 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l-------~~~~~~  440 (465)
                      +++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++.   ...    .++.+   +       .+ ..+
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~   81 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKA-ENL   81 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH-TTC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH-HcC
Confidence            56899999998 599999999999999999999999999988877662   221    12211   1       12 346


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+|||++++..
T Consensus        82 ~id~li~~Ag~~~   94 (247)
T 3lyl_A           82 AIDILVNNAGITR   94 (247)
T ss_dssp             CCSEEEECCCCCC
T ss_pred             CCCEEEECCCCCC
Confidence            7899999998763

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.92  E-value=3.1e-05  Score=72.99  Aligned_cols=76  Identities=30%  Similarity=0.421  Sum_probs=57.7

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-cc--cchhc---cccc--CCCCeeEEEec
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-HA--LSLAD---LENF--NPEDGMILANT  448 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-~~--~~~~~---l~~~--~~~~~DilIna  448 (465)
                      .+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++.. ..  .++.+   +.+.  ..+..|+|||+
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~   83 (244)
T 3d3w_A            4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNN   83 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEEC
T ss_pred             ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCCCEEEEC
Confidence            467899999998 6999999999999999999999999998888776532 22  23222   2111  34568999999


Q ss_pred             CCCCC
Q 012352          449 TSIGM  453 (465)
Q Consensus       449 T~~gm  453 (465)
                      ++...
T Consensus        84 Ag~~~   88 (244)
T 3d3w_A           84 AAVAL   88 (244)
T ss_dssp             CCCCC
T ss_pred             CccCC
Confidence            98754

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.91  E-value=1.3e-05  Score=77.20  Aligned_cols=75  Identities=24%  Similarity=0.265  Sum_probs=57.3

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---cccc------CCCCeeE
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---LENF------NPEDGMI  444 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~Di  444 (465)
                      +++|+++|+|+ ||+|++++..|++.|++|++++|+.++.++++++++...    .|+.+   +.+.      ..+..|+
T Consensus         4 l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~   83 (263)
T 2a4k_A            4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHG   83 (263)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCCCcE
Confidence            57899999998 599999999999999999999999999988887764321    22221   1110      2356899


Q ss_pred             EEecCCCCC
Q 012352          445 LANTTSIGM  453 (465)
Q Consensus       445 lInaT~~gm  453 (465)
                      |||++++..
T Consensus        84 lvnnAg~~~   92 (263)
T 2a4k_A           84 VAHFAGVAH   92 (263)
T ss_dssp             EEEGGGGTT
T ss_pred             EEECCCCCC
Confidence            999998754

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.91  E-value=2e-05  Score=75.77  Aligned_cols=75  Identities=27%  Similarity=0.376  Sum_probs=57.6

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---cccc------CCC
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---LENF------NPE  440 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l~~~------~~~  440 (465)
                      .+++|++||+|++ |+|++++..|++.|++|++++|+.++++++++++.   ...    .|+.+   +.++      ..+
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (264)
T 3ucx_A            8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYG   87 (264)
T ss_dssp             TTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4789999999985 99999999999999999999999999999887763   221    13221   1110      346


Q ss_pred             CeeEEEecCCCC
Q 012352          441 DGMILANTTSIG  452 (465)
Q Consensus       441 ~~DilInaT~~g  452 (465)
                      ..|+|||+++..
T Consensus        88 ~id~lv~nAg~~   99 (264)
T 3ucx_A           88 RVDVVINNAFRV   99 (264)
T ss_dssp             CCSEEEECCCSC
T ss_pred             CCcEEEECCCCC
Confidence            799999999763

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.91  E-value=2.3e-05  Score=74.95  Aligned_cols=77  Identities=21%  Similarity=0.209  Sum_probs=57.9

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH---CCcc----cchhc---cccc------CC
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHA----LSLAD---LENF------NP  439 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~---~~~~----~~~~~---l~~~------~~  439 (465)
                      ..+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++++++   +...    .|+.+   +.+.      ..
T Consensus         5 ~~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (260)
T 2ae2_A            5 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHF   84 (260)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4578899999998 59999999999999999999999999888877765   2221    13221   1110      23


Q ss_pred             -CCeeEEEecCCCCC
Q 012352          440 -EDGMILANTTSIGM  453 (465)
Q Consensus       440 -~~~DilInaT~~gm  453 (465)
                       +..|+|||++++..
T Consensus        85 ~g~id~lv~~Ag~~~   99 (260)
T 2ae2_A           85 HGKLNILVNNAGIVI   99 (260)
T ss_dssp             TTCCCEEEECCCCCC
T ss_pred             CCCCCEEEECCCCCC
Confidence             67999999998753

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=97.91  E-value=1.6e-05  Score=76.96  Aligned_cols=76  Identities=24%  Similarity=0.312  Sum_probs=57.7

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---cccc------CCC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---LENF------NPE  440 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l~~~------~~~  440 (465)
                      .+++|++||+|+ ||+|++++..|++.|++|++++|+.++++++++++.   ...    .|+.+   +.++      ..+
T Consensus        25 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (270)
T 3ftp_A           25 TLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFG  104 (270)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            478999999998 499999999999999999999999999988877652   211    23221   1110      235


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+|||++++..
T Consensus       105 ~iD~lvnnAg~~~  117 (270)
T 3ftp_A          105 ALNVLVNNAGITQ  117 (270)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CCCEEEECCCCCC
Confidence            7899999998764

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=97.90  E-value=2.1e-05  Score=76.42  Aligned_cols=75  Identities=17%  Similarity=0.123  Sum_probs=55.4

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC---cc----cchhc---cccc------CCCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG---HA----LSLAD---LENF------NPED  441 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~---~~----~~~~~---l~~~------~~~~  441 (465)
                      +++|++||+|+ ||+|++++..|++.|++|++++|+.++++++++++..   ..    .|+.+   +.+.      ..+.
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  101 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGP  101 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            56899999998 5999999999999999999999999999998887732   11    23221   1110      2357


Q ss_pred             eeEEEecCCCCC
Q 012352          442 GMILANTTSIGM  453 (465)
Q Consensus       442 ~DilInaT~~gm  453 (465)
                      .|+|||+++...
T Consensus       102 id~lv~nAg~~~  113 (279)
T 3sju_A          102 IGILVNSAGRNG  113 (279)
T ss_dssp             CCEEEECCCCCC
T ss_pred             CcEEEECCCCCC
Confidence            899999998753

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=97.90  E-value=2.9e-05  Score=75.23  Aligned_cols=76  Identities=21%  Similarity=0.254  Sum_probs=57.5

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH---CCcc----cchhc---cccc------CCC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHA----LSLAD---LENF------NPE  440 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~---~~~~----~~~~~---l~~~------~~~  440 (465)
                      .+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++++++   +...    .|+.+   +.+.      ..+
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   98 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYG   98 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            477899999998 59999999999999999999999999888877766   3221    23221   1110      245


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+|||+++...
T Consensus        99 ~iD~lv~~Ag~~~  111 (277)
T 2rhc_B           99 PVDVLVNNAGRPG  111 (277)
T ss_dssp             SCSEEEECCCCCC
T ss_pred             CCCEEEECCCCCC
Confidence            7899999998753

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=97.90  E-value=2e-05  Score=76.83  Aligned_cols=76  Identities=26%  Similarity=0.355  Sum_probs=57.1

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC---cc----cchhc---cccc------CC
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG---HA----LSLAD---LENF------NP  439 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~---~~----~~~~~---l~~~------~~  439 (465)
                      ..+++|++||+|++ |+|++++..|++.|++|++++|+.++++++++++..   ..    .|+.+   +.++      ..
T Consensus        24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  103 (283)
T 3v8b_A           24 MNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKF  103 (283)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            34678999999985 999999999999999999999999999999888742   11    12221   1110      23


Q ss_pred             CCeeEEEecCCCC
Q 012352          440 EDGMILANTTSIG  452 (465)
Q Consensus       440 ~~~DilInaT~~g  452 (465)
                      +..|+|||++++.
T Consensus       104 g~iD~lVnnAg~~  116 (283)
T 3v8b_A          104 GHLDIVVANAGIN  116 (283)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            5799999999874

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=97.89  E-value=2e-05  Score=75.69  Aligned_cols=76  Identities=24%  Similarity=0.310  Sum_probs=57.5

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---cccc------CCCCee
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---LENF------NPEDGM  443 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~D  443 (465)
                      .+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++++++....    .|+.+   +.+.      ..+..|
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD   83 (260)
T 1nff_A            4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLH   83 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            367899999998 599999999999999999999999999888877764321    12221   1110      234789


Q ss_pred             EEEecCCCCC
Q 012352          444 ILANTTSIGM  453 (465)
Q Consensus       444 ilInaT~~gm  453 (465)
                      +|||+++...
T Consensus        84 ~lv~~Ag~~~   93 (260)
T 1nff_A           84 VLVNNAGILN   93 (260)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEECCCCCC
Confidence            9999998754

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.89  E-value=1.5e-05  Score=74.81  Aligned_cols=74  Identities=24%  Similarity=0.281  Sum_probs=55.6

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-cc--cch-hcccccCCCCeeEEEecCCC
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-HA--LSL-ADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-~~--~~~-~~l~~~~~~~~DilInaT~~  451 (465)
                      ..+++++++|+|+ |++|++++..|.+.|++|+++.|+.++.+++.+. +. ..  .++ +++.+ .++++|+|||+++.
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~-~~~~~~~~Dl~~~~~~-~~~~~D~vi~~ag~   94 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRER-GASDIVVANLEEDFSH-AFASIDAVVFAAGS   94 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHT-TCSEEEECCTTSCCGG-GGTTCSEEEECCCC
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhC-CCceEEEcccHHHHHH-HHcCCCEEEECCCC
Confidence            4578999999998 7999999999999999999999999988877642 33 22  233 33334 45689999999986


Q ss_pred             C
Q 012352          452 G  452 (465)
Q Consensus       452 g  452 (465)
                      .
T Consensus        95 ~   95 (236)
T 3e8x_A           95 G   95 (236)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=97.89  E-value=2.8e-05  Score=75.62  Aligned_cols=76  Identities=22%  Similarity=0.371  Sum_probs=57.0

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEEC-CHHHHHHHHHHHC----Ccc----cchhc---c-------cc
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYDRARELAETVG----GHA----LSLAD---L-------EN  436 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R-~~~~a~~la~~~~----~~~----~~~~~---l-------~~  436 (465)
                      .++.+|++||+|+ ||+|++++..|++.|++|++++| +.++.+++++++.    ...    .|+.+   +       .+
T Consensus        21 ~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  100 (281)
T 3v2h_A           21 QSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVAD  100 (281)
T ss_dssp             -CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHH
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3577899999998 49999999999999999999999 7778888777663    111    12221   1       11


Q ss_pred             cCCCCeeEEEecCCCCC
Q 012352          437 FNPEDGMILANTTSIGM  453 (465)
Q Consensus       437 ~~~~~~DilInaT~~gm  453 (465)
                       ..+..|+|||++++..
T Consensus       101 -~~g~iD~lv~nAg~~~  116 (281)
T 3v2h_A          101 -RFGGADILVNNAGVQF  116 (281)
T ss_dssp             -HTSSCSEEEECCCCCC
T ss_pred             -HCCCCCEEEECCCCCC
Confidence             3467999999998764

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=97.87  E-value=1.4e-05  Score=77.86  Aligned_cols=75  Identities=29%  Similarity=0.352  Sum_probs=58.0

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC---cc----cchhc---cccc------CCC
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG---HA----LSLAD---LENF------NPE  440 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~---~~----~~~~~---l~~~------~~~  440 (465)
                      .+++|++||+|++ |+|++++..|++.|++|++++|+.++++++++++..   ..    .|+.+   +.+.      ..+
T Consensus         5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   84 (280)
T 3tox_A            5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFG   84 (280)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4678999999984 999999999999999999999999999999888742   11    12221   1110      235


Q ss_pred             CeeEEEecCCCC
Q 012352          441 DGMILANTTSIG  452 (465)
Q Consensus       441 ~~DilInaT~~g  452 (465)
                      ..|+|||++++.
T Consensus        85 ~iD~lvnnAg~~   96 (280)
T 3tox_A           85 GLDTAFNNAGAL   96 (280)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            789999999864

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=97.87  E-value=3.4e-05  Score=75.40  Aligned_cols=75  Identities=27%  Similarity=0.414  Sum_probs=57.6

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHC-----Ccc----cchhc---c-------
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGA---RVVIANRTYDRARELAETVG-----GHA----LSLAD---L-------  434 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~---~v~i~~R~~~~a~~la~~~~-----~~~----~~~~~---l-------  434 (465)
                      .+++|++||+|++ |+|++++..|++.|+   +|++++|+.++++++++++.     ...    .|+.+   +       
T Consensus        30 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~  109 (287)
T 3rku_A           30 RLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENL  109 (287)
T ss_dssp             HHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTS
T ss_pred             hcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence            4678999999985 999999999999987   99999999999998887762     221    23221   1       


Q ss_pred             cccCCCCeeEEEecCCCCC
Q 012352          435 ENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       435 ~~~~~~~~DilInaT~~gm  453 (465)
                      .+ ..+..|+|||++++..
T Consensus       110 ~~-~~g~iD~lVnnAG~~~  127 (287)
T 3rku_A          110 PQ-EFKDIDILVNNAGKAL  127 (287)
T ss_dssp             CG-GGCSCCEEEECCCCCC
T ss_pred             HH-hcCCCCEEEECCCcCC
Confidence            11 3457999999998764

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.86  E-value=4.3e-05  Score=71.88  Aligned_cols=76  Identities=26%  Similarity=0.334  Sum_probs=57.2

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-cc--cchh---ccccc--CCCCeeEEEec
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-HA--LSLA---DLENF--NPEDGMILANT  448 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-~~--~~~~---~l~~~--~~~~~DilIna  448 (465)
                      ++++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++.. ..  .++.   ++.+.  ..+..|+|||+
T Consensus         4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~   83 (244)
T 1cyd_A            4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNN   83 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEEC
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEEEC
Confidence            467899999998 6999999999999999999999999988887766532 21  2222   22111  24568999999


Q ss_pred             CCCCC
Q 012352          449 TSIGM  453 (465)
Q Consensus       449 T~~gm  453 (465)
                      ++...
T Consensus        84 Ag~~~   88 (244)
T 1cyd_A           84 AALVI   88 (244)
T ss_dssp             CCCCC
T ss_pred             CcccC
Confidence            98653

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=97.85  E-value=1.3e-05  Score=77.18  Aligned_cols=76  Identities=18%  Similarity=0.181  Sum_probs=54.4

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchhc---c-------cccCCCCee
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLAD---L-------ENFNPEDGM  443 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~~---l-------~~~~~~~~D  443 (465)
                      .++++|++||+|+ ||+|++++..|++.|++|++++|+.++..+.....+...  .|+.+   +       .+ ..+..|
T Consensus        23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~-~~g~iD  101 (260)
T 3gem_A           23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQAGAVALYGDFSCETGIMAFIDLLKT-QTSSLR  101 (260)
T ss_dssp             ----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHH-HCSCCS
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHH-hcCCCC
Confidence            5678999999998 599999999999999999999999887665555555322  12211   1       11 346799


Q ss_pred             EEEecCCCCC
Q 012352          444 ILANTTSIGM  453 (465)
Q Consensus       444 ilInaT~~gm  453 (465)
                      +|||++++..
T Consensus       102 ~lv~nAg~~~  111 (260)
T 3gem_A          102 AVVHNASEWL  111 (260)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEECCCccC
Confidence            9999998754

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=97.85  E-value=2.3e-05  Score=76.00  Aligned_cols=76  Identities=18%  Similarity=0.238  Sum_probs=57.4

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC------cc----cchhc---cccc-----
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG------HA----LSLAD---LENF-----  437 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~------~~----~~~~~---l~~~-----  437 (465)
                      .++++|++||+|+ ||+|++++..|++.|++|++++|+.++++++++++..      ..    .|+.+   +.+.     
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   86 (281)
T 3svt_A            7 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVT   86 (281)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             cCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence            3578999999998 4999999999999999999999999999988877631      11    12221   1110     


Q ss_pred             -CCCCeeEEEecCCCC
Q 012352          438 -NPEDGMILANTTSIG  452 (465)
Q Consensus       438 -~~~~~DilInaT~~g  452 (465)
                       ..+..|+|||+++..
T Consensus        87 ~~~g~id~lv~nAg~~  102 (281)
T 3svt_A           87 AWHGRLHGVVHCAGGS  102 (281)
T ss_dssp             HHHSCCCEEEECCCCC
T ss_pred             HHcCCCCEEEECCCcC
Confidence             235789999999873

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.85  E-value=3e-05  Score=74.38  Aligned_cols=75  Identities=19%  Similarity=0.224  Sum_probs=56.8

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---cccc------CCC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---LENF------NPE  440 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l~~~------~~~  440 (465)
                      .+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++++++.   ...    .|+.+   +.+.      ..+
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   83 (262)
T 1zem_A            4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFG   83 (262)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            367899999998 599999999999999999999999999888877763   211    13221   1110      235


Q ss_pred             CeeEEEecCCCC
Q 012352          441 DGMILANTTSIG  452 (465)
Q Consensus       441 ~~DilInaT~~g  452 (465)
                      ..|+|||+++..
T Consensus        84 ~id~lv~nAg~~   95 (262)
T 1zem_A           84 KIDFLFNNAGYQ   95 (262)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            789999999865

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=97.85  E-value=3.4e-05  Score=73.50  Aligned_cols=71  Identities=24%  Similarity=0.429  Sum_probs=54.9

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---ccc----c--CCCCeeEEEe
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---LEN----F--NPEDGMILAN  447 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~----~--~~~~~DilIn  447 (465)
                      |+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.++++...    .|+.+   +.+    .  ..+..|+|||
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvn   80 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVN   80 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence            57899988 599999999999999999999999999999888875321    23221   111    0  3457999999


Q ss_pred             cCCCC
Q 012352          448 TTSIG  452 (465)
Q Consensus       448 aT~~g  452 (465)
                      ++++.
T Consensus        81 nAg~~   85 (248)
T 3asu_A           81 NAGLA   85 (248)
T ss_dssp             CCCCC
T ss_pred             CCCcC
Confidence            99875

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.84  E-value=2.1e-05  Score=77.34  Aligned_cols=76  Identities=18%  Similarity=0.217  Sum_probs=58.4

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---cccc------CCC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---LENF------NPE  440 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l~~~------~~~  440 (465)
                      .+++|++||+|+ ||+|++++..|++.|++|++++|+.++++++++++.   ...    .|+.+   +.++      ..+
T Consensus        28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (301)
T 3tjr_A           28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLG  107 (301)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCC
Confidence            478999999998 599999999999999999999999999998887763   111    23221   1110      235


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+|||++++..
T Consensus       108 ~id~lvnnAg~~~  120 (301)
T 3tjr_A          108 GVDVVFSNAGIVV  120 (301)
T ss_dssp             SCSEEEECCCCCC
T ss_pred             CCCEEEECCCcCC
Confidence            7899999998764

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=97.84  E-value=1.9e-05  Score=75.57  Aligned_cols=77  Identities=21%  Similarity=0.277  Sum_probs=57.8

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc--c--cchhc---cccc------CCCCe
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH--A--LSLAD---LENF------NPEDG  442 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~--~--~~~~~---l~~~------~~~~~  442 (465)
                      ..+++|++||+|+ ||+|++++..|++.|++|++++|+.++.+++++++...  .  .|+.+   +.+.      ..+..
T Consensus         8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~i   87 (263)
T 3ak4_A            8 FDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGGF   87 (263)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTCC
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            3467899999998 59999999999999999999999999988887766421  1  22221   1110      23478


Q ss_pred             eEEEecCCCCC
Q 012352          443 MILANTTSIGM  453 (465)
Q Consensus       443 DilInaT~~gm  453 (465)
                      |+|||+++...
T Consensus        88 D~lv~~Ag~~~   98 (263)
T 3ak4_A           88 DLLCANAGVST   98 (263)
T ss_dssp             CEEEECCCCCC
T ss_pred             CEEEECCCcCC
Confidence            99999998753

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.84  E-value=1.6e-05  Score=75.75  Aligned_cols=77  Identities=19%  Similarity=0.280  Sum_probs=58.7

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchh---ccccc------CCCCe
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLA---DLENF------NPEDG  442 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~---~l~~~------~~~~~  442 (465)
                      ..+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.++++...    .++.   ++.+.      ..+..
T Consensus         8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   87 (265)
T 2o23_A            8 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRV   87 (265)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCC
Confidence            3577899999998 599999999999999999999999988888888775421    2222   12110      23478


Q ss_pred             eEEEecCCCCC
Q 012352          443 MILANTTSIGM  453 (465)
Q Consensus       443 DilInaT~~gm  453 (465)
                      |+|||+++...
T Consensus        88 d~li~~Ag~~~   98 (265)
T 2o23_A           88 DVAVNCAGIAV   98 (265)
T ss_dssp             CEEEECCCCCC
T ss_pred             CEEEECCccCC
Confidence            99999998754

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=97.84  E-value=2.9e-05  Score=72.78  Aligned_cols=72  Identities=21%  Similarity=0.310  Sum_probs=53.8

Q ss_pred             cEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---cccc---CCCCeeEEEecCC
Q 012352          382 KLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---LENF---NPEDGMILANTTS  450 (465)
Q Consensus       382 k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~~---~~~~~DilInaT~  450 (465)
                      |++||+|++ |+|++++..|++.|++|++++|+.++.+++.++++...    .|+.+   +.+.   .....|+|||+++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~Ag   81 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPSTVVHSAG   81 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEECCC
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhcCCEEEEeCC
Confidence            579999985 99999999999999999999999999999988875421    23221   1110   1233499999998


Q ss_pred             CCC
Q 012352          451 IGM  453 (465)
Q Consensus       451 ~gm  453 (465)
                      .+.
T Consensus        82 ~~~   84 (230)
T 3guy_A           82 SGY   84 (230)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            764

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=97.83  E-value=3e-05  Score=74.83  Aligned_cols=76  Identities=25%  Similarity=0.349  Sum_probs=57.7

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-cc--cchh---ccccc------CCCCee
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-HA--LSLA---DLENF------NPEDGM  443 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-~~--~~~~---~l~~~------~~~~~D  443 (465)
                      ..+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++.. ..  .|+.   ++.+.      ..+..|
T Consensus         5 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD   84 (270)
T 1yde_A            5 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLD   84 (270)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            3467899999998 5999999999999999999999999998888877642 11  2222   11110      235789


Q ss_pred             EEEecCCCC
Q 012352          444 ILANTTSIG  452 (465)
Q Consensus       444 ilInaT~~g  452 (465)
                      +|||+++..
T Consensus        85 ~lv~nAg~~   93 (270)
T 1yde_A           85 CVVNNAGHH   93 (270)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999999865

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=97.83  E-value=3.5e-05  Score=76.43  Aligned_cols=76  Identities=24%  Similarity=0.324  Sum_probs=57.9

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---C--cc----cchhc---cccc------C
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---G--HA----LSLAD---LENF------N  438 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~--~~----~~~~~---l~~~------~  438 (465)
                      ++.+|+|||+|+ ||+|++++..|++.|++|++++|+.++++++.+++.   .  ..    .|+.+   +.++      .
T Consensus         5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   84 (319)
T 3ioy_A            5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR   84 (319)
T ss_dssp             CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            467899999998 599999999999999999999999999988877653   1  11    12221   1110      2


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|+|||+++++.
T Consensus        85 ~g~id~lv~nAg~~~   99 (319)
T 3ioy_A           85 FGPVSILCNNAGVNL   99 (319)
T ss_dssp             TCCEEEEEECCCCCC
T ss_pred             CCCCCEEEECCCcCC
Confidence            467899999998764

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=97.83  E-value=1.9e-05  Score=76.62  Aligned_cols=77  Identities=25%  Similarity=0.359  Sum_probs=57.6

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH---CCcc----cchhcc---ccc-----CCC
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHA----LSLADL---ENF-----NPE  440 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~---~~~~----~~~~~l---~~~-----~~~  440 (465)
                      .++++|+++|+|++ |+|++++..|++.|++|++++|+.++++++++++   +...    .++.+.   .++     ..+
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g  108 (275)
T 4imr_A           29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIA  108 (275)
T ss_dssp             HCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHS
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            35789999999985 9999999999999999999999998888887776   2221    122211   110     115


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+|||++++..
T Consensus       109 ~iD~lvnnAg~~~  121 (275)
T 4imr_A          109 PVDILVINASAQI  121 (275)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CCCEEEECCCCCC
Confidence            7899999998754

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=97.82  E-value=3e-05  Score=74.69  Aligned_cols=76  Identities=25%  Similarity=0.250  Sum_probs=55.1

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEEC-CHHHHHHHHHHH----CCcc----cchhcc-------ccc---
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYDRARELAETV----GGHA----LSLADL-------ENF---  437 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R-~~~~a~~la~~~----~~~~----~~~~~l-------~~~---  437 (465)
                      .+++|++||+|+ ||+|++++..|++.|++|++++| +.++++++++++    +...    .|+.+.       .+.   
T Consensus         8 ~~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   87 (276)
T 1mxh_A            8 ASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDC   87 (276)
T ss_dssp             ---CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHH
Confidence            367899999998 49999999999999999999999 998888887766    3221    122221       110   


Q ss_pred             ---CCCCeeEEEecCCCCC
Q 012352          438 ---NPEDGMILANTTSIGM  453 (465)
Q Consensus       438 ---~~~~~DilInaT~~gm  453 (465)
                         ..+..|+|||++++..
T Consensus        88 ~~~~~g~id~lv~nAg~~~  106 (276)
T 1mxh_A           88 SFRAFGRCDVLVNNASAYY  106 (276)
T ss_dssp             HHHHHSCCCEEEECCCCCC
T ss_pred             HHHhcCCCCEEEECCCCCC
Confidence               2347899999998754

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=97.82  E-value=1.9e-05  Score=74.66  Aligned_cols=76  Identities=30%  Similarity=0.344  Sum_probs=57.4

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC----Cc--c--cch--h---ccccc-----
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG----GH--A--LSL--A---DLENF-----  437 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~----~~--~--~~~--~---~l~~~-----  437 (465)
                      ..+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++.    ..  .  .++  .   ++.++     
T Consensus        10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~   89 (247)
T 3i1j_A           10 ELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVE   89 (247)
T ss_dssp             TTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHH
Confidence            4578999999998 599999999999999999999999999998887663    11  1  122  1   11110     


Q ss_pred             -CCCCeeEEEecCCCC
Q 012352          438 -NPEDGMILANTTSIG  452 (465)
Q Consensus       438 -~~~~~DilInaT~~g  452 (465)
                       ..+..|+|||+++..
T Consensus        90 ~~~g~id~lv~nAg~~  105 (247)
T 3i1j_A           90 HEFGRLDGLLHNASII  105 (247)
T ss_dssp             HHHSCCSEEEECCCCC
T ss_pred             HhCCCCCEEEECCccC
Confidence             235789999999863

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=97.82  E-value=3.4e-05  Score=73.84  Aligned_cols=74  Identities=28%  Similarity=0.445  Sum_probs=55.7

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH---CCcc----cchhc---ccc----c--C-CC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHA----LSLAD---LEN----F--N-PE  440 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~---~~~~----~~~~~---l~~----~--~-~~  440 (465)
                      +++|++||+|+ ||+|++++..|++.|++|++++|+.++.+++++++   +...    .|+.+   +.+    .  . .+
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g   82 (260)
T 2qq5_A            3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQG   82 (260)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            56899999998 59999999999999999999999999888887766   3221    12221   111    0  1 46


Q ss_pred             CeeEEEecCCCC
Q 012352          441 DGMILANTTSIG  452 (465)
Q Consensus       441 ~~DilInaT~~g  452 (465)
                      ..|+|||+++.|
T Consensus        83 ~id~lvnnAg~g   94 (260)
T 2qq5_A           83 RLDVLVNNAYAG   94 (260)
T ss_dssp             CCCEEEECCCTT
T ss_pred             CceEEEECCccc
Confidence            789999999654

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=97.82  E-value=4.6e-05  Score=73.74  Aligned_cols=77  Identities=26%  Similarity=0.390  Sum_probs=55.5

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECC------------HHHHHHHHHHH---CCcc----cchhc---
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT------------YDRARELAETV---GGHA----LSLAD---  433 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~------------~~~a~~la~~~---~~~~----~~~~~---  433 (465)
                      .++++|++||+|+ ||+|++++..|++.|++|++++|+            .++.+++.+.+   +...    .|+.+   
T Consensus         6 ~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~   85 (281)
T 3s55_A            6 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAA   85 (281)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHH
Confidence            4578999999998 599999999999999999999997            66666655544   2221    13221   


Q ss_pred             cccc------CCCCeeEEEecCCCCC
Q 012352          434 LENF------NPEDGMILANTTSIGM  453 (465)
Q Consensus       434 l~~~------~~~~~DilInaT~~gm  453 (465)
                      +.++      ..+..|+|||++++..
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~  111 (281)
T 3s55_A           86 LESFVAEAEDTLGGIDIAITNAGIST  111 (281)
T ss_dssp             HHHHHHHHHHHHTCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCCCC
Confidence            1110      2357899999998764

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.81  E-value=5.7e-05  Score=72.20  Aligned_cols=75  Identities=24%  Similarity=0.335  Sum_probs=56.2

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC----C-cc----cchhc---cccc------C
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG----G-HA----LSLAD---LENF------N  438 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~----~-~~----~~~~~---l~~~------~  438 (465)
                      .+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++++++.    . ..    .|+.+   +.+.      .
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (260)
T 2z1n_A            4 GIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDL   83 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHh
Confidence            467899999998 599999999999999999999999998888777652    1 21    23221   1110      2


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+ .|+|||++++..
T Consensus        84 ~g-id~lv~~Ag~~~   97 (260)
T 2z1n_A           84 GG-ADILVYSTGGPR   97 (260)
T ss_dssp             TC-CSEEEECCCCCC
T ss_pred             cC-CCEEEECCCCCC
Confidence            34 899999998753

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=97.81  E-value=2.2e-05  Score=76.30  Aligned_cols=143  Identities=20%  Similarity=0.292  Sum_probs=89.7

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCch-----HHHhhhccccCHHHHhccceeeEEEec
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHK-----EAAVKCCDEVDTVAKSIGAVNCIIRRQ  342 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K-----~~v~~~~d~~~~~A~~~gavNtv~~~~  342 (465)
                      .+..++.|+......+.-    +++.+.++.+ .++.+.|+.|..|.-     ..++..+   ++ .+.+...+.+-   
T Consensus        54 ~k~~~~~Gi~~~~~~lp~~~s~~ell~~i~~lN~D~~v~GIlvqlPlP~~id~~~i~~~I---~p-~KDVDG~~p~n---  126 (281)
T 2c2x_A           54 HADCAKVGITSIRRDLPADISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERV---DP-AKDADGLHPTN---  126 (281)
T ss_dssp             HHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHS---CG-GGBTTSCCHHH---
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCCHHHHHhhc---Cc-cCCccCCChhh---
Confidence            567899999876555542    3577777777 688999999999963     2222221   11 01111111110   


Q ss_pred             cCCeEE-E----EeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchh-HHHHHHHHHHC--CCeEEEEECCH
Q 012352          343 SDGKLF-G----YNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGA-GKALAYGAKAK--GARVVIANRTY  414 (465)
Q Consensus       343 ~~g~l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~-g~ai~~~L~~~--G~~v~i~~R~~  414 (465)
                       -|+++ |    .-.--.|++..+++.           +.++.+|+++|+|+|.+ |+.++..|...  |++|++++|+.
T Consensus       127 -~g~l~~g~~~~~PcTp~gi~~ll~~~-----------~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t  194 (281)
T 2c2x_A          127 -LGRLVLGTPAPLPCTPRGIVHLLRRY-----------DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT  194 (281)
T ss_dssp             -HHHHHHTCCCCCCHHHHHHHHHHHHT-----------TCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC
T ss_pred             -HHHHhCCCCCCCCChHHHHHHHHHHc-----------CCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch
Confidence             01110 0    001245667766653           25789999999999985 99999999999  78999998765


Q ss_pred             HHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          415 DRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       415 ~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ..                 +.+ ...++|+||+|++..
T Consensus       195 ~~-----------------L~~-~~~~ADIVI~Avg~p  214 (281)
T 2c2x_A          195 RD-----------------LPA-LTRQADIVVAAVGVA  214 (281)
T ss_dssp             SC-----------------HHH-HHTTCSEEEECSCCT
T ss_pred             hH-----------------HHH-HHhhCCEEEECCCCC
Confidence            32                 222 234678888888754

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=97.81  E-value=3.2e-05  Score=74.14  Aligned_cols=76  Identities=33%  Similarity=0.526  Sum_probs=58.0

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---cccc------CC
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---LENF------NP  439 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l~~~------~~  439 (465)
                      ..+++|++||+|+ ||+|++++..|++.|++|++++|+.++++++.+++.   ...    .|+.+   +.++      ..
T Consensus        25 ~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  104 (262)
T 3rkr_A           25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAH  104 (262)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            3578899999998 599999999999999999999999999998887762   221    23221   1110      23


Q ss_pred             CCeeEEEecCCCC
Q 012352          440 EDGMILANTTSIG  452 (465)
Q Consensus       440 ~~~DilInaT~~g  452 (465)
                      +..|+|||+++.+
T Consensus       105 g~id~lv~~Ag~~  117 (262)
T 3rkr_A          105 GRCDVLVNNAGVG  117 (262)
T ss_dssp             SCCSEEEECCCCC
T ss_pred             CCCCEEEECCCcc
Confidence            5789999999884

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=97.81  E-value=3.9e-05  Score=74.10  Aligned_cols=77  Identities=27%  Similarity=0.349  Sum_probs=57.2

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC-----Ccc----cchhc---cccc------
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG-----GHA----LSLAD---LENF------  437 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~-----~~~----~~~~~---l~~~------  437 (465)
                      ..+++|++||+|+ ||+|++++..|++.|++|++++|+.++.+++.+++.     ...    .|+.+   +.++      
T Consensus        28 ~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~  107 (279)
T 1xg5_A           28 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS  107 (279)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence            3478999999988 599999999999999999999999998888776652     111    12211   1110      


Q ss_pred             CCCCeeEEEecCCCCC
Q 012352          438 NPEDGMILANTTSIGM  453 (465)
Q Consensus       438 ~~~~~DilInaT~~gm  453 (465)
                      ..+..|+|||+++...
T Consensus       108 ~~g~iD~vi~~Ag~~~  123 (279)
T 1xg5_A          108 QHSGVDICINNAGLAR  123 (279)
T ss_dssp             HHCCCSEEEECCCCCC
T ss_pred             hCCCCCEEEECCCCCC
Confidence            2347899999998754

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.81  E-value=3.1e-05  Score=74.94  Aligned_cols=77  Identities=22%  Similarity=0.331  Sum_probs=57.5

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEEC-------------CHHHHHHHHHHHCC---cc----cchhc--
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR-------------TYDRARELAETVGG---HA----LSLAD--  433 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R-------------~~~~a~~la~~~~~---~~----~~~~~--  433 (465)
                      ..+++|++||+|++ |+|++++..|++.|++|++++|             +.++.+++++.+..   ..    .|+.+  
T Consensus        11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~   90 (280)
T 3pgx_A           11 GSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDA   90 (280)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHH
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence            35789999999985 9999999999999999999998             78888888776632   11    13221  


Q ss_pred             -cccc------CCCCeeEEEecCCCCC
Q 012352          434 -LENF------NPEDGMILANTTSIGM  453 (465)
Q Consensus       434 -l~~~------~~~~~DilInaT~~gm  453 (465)
                       +.++      ..+..|+|||++++..
T Consensus        91 ~v~~~~~~~~~~~g~id~lvnnAg~~~  117 (280)
T 3pgx_A           91 ALRELVADGMEQFGRLDVVVANAGVLS  117 (280)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence             1110      2457899999998764

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=97.80  E-value=5.2e-05  Score=73.08  Aligned_cols=77  Identities=19%  Similarity=0.315  Sum_probs=57.9

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH---CCcc----cchhc---cccc------CC
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHA----LSLAD---LENF------NP  439 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~---~~~~----~~~~~---l~~~------~~  439 (465)
                      ..+.+|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++   +...    .|+.+   +.+.      ..
T Consensus        27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  106 (272)
T 1yb1_A           27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEI  106 (272)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence            4578999999998 59999999999999999999999999888877665   2221    22221   1110      24


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +..|+|||+++...
T Consensus       107 g~iD~li~~Ag~~~  120 (272)
T 1yb1_A          107 GDVSILVNNAGVVY  120 (272)
T ss_dssp             CCCSEEEECCCCCC
T ss_pred             CCCcEEEECCCcCC
Confidence            57899999998753

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=97.80  E-value=5.1e-05  Score=73.90  Aligned_cols=77  Identities=26%  Similarity=0.392  Sum_probs=57.6

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH----CCcc----cchhc---cccc------C
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV----GGHA----LSLAD---LENF------N  438 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~----~~~~----~~~~~---l~~~------~  438 (465)
                      ..+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++    +...    .|+.+   +.+.      .
T Consensus        22 ~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~  101 (302)
T 1w6u_A           22 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKV  101 (302)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            4578899999998 59999999999999999999999999888777665    3221    23221   1110      2


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|+|||+++...
T Consensus       102 ~g~id~li~~Ag~~~  116 (302)
T 1w6u_A          102 AGHPNIVINNAAGNF  116 (302)
T ss_dssp             TCSCSEEEECCCCCC
T ss_pred             cCCCCEEEECCCCCC
Confidence            457899999998653

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=97.80  E-value=3.5e-05  Score=73.33  Aligned_cols=76  Identities=28%  Similarity=0.353  Sum_probs=54.8

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCH-HHHHHHHHHHCCcc----cchhc---cccc------CCCCe
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY-DRARELAETVGGHA----LSLAD---LENF------NPEDG  442 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~-~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~  442 (465)
                      .+++|+++|+|+ ||+|++++..|++.|++|++++|+. ++.++..+..+...    .|+.+   +.+.      ..+..
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   83 (249)
T 2ew8_A            4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRC   83 (249)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHcCCC
Confidence            367899999998 5999999999999999999999998 77665444444321    23221   1110      23578


Q ss_pred             eEEEecCCCCC
Q 012352          443 MILANTTSIGM  453 (465)
Q Consensus       443 DilInaT~~gm  453 (465)
                      |+|||+++...
T Consensus        84 d~lv~nAg~~~   94 (249)
T 2ew8_A           84 DILVNNAGIYP   94 (249)
T ss_dssp             CEEEECCCCCC
T ss_pred             CEEEECCCCCC
Confidence            99999998753

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.80  E-value=3.1e-05  Score=74.02  Aligned_cols=74  Identities=31%  Similarity=0.456  Sum_probs=55.0

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchhc---cccc------CCCCeeEEE
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLAD---LENF------NPEDGMILA  446 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~~---l~~~------~~~~~DilI  446 (465)
                      +++|+++|+|+ ||+|++++..|++.|++|++++|+.++ +++.+++....  .|+.+   +.+.      ..+..|+||
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv   82 (256)
T 2d1y_A            4 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLV   82 (256)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHhhCCEEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            56899999998 599999999999999999999999888 77776663211  12211   1110      235789999


Q ss_pred             ecCCCCC
Q 012352          447 NTTSIGM  453 (465)
Q Consensus       447 naT~~gm  453 (465)
                      |+++...
T Consensus        83 ~~Ag~~~   89 (256)
T 2d1y_A           83 NNAAIAA   89 (256)
T ss_dssp             ECCCCCC
T ss_pred             ECCCCCC
Confidence            9998763

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.80  E-value=2.2e-05  Score=79.68  Aligned_cols=74  Identities=23%  Similarity=0.332  Sum_probs=56.9

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc-c---chhcccccCCCCeeEEEecCCCC
Q 012352          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA-L---SLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       378 ~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~-~---~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      .+.+++|+|+|+|++|++++..++..|++|++++|++++.+.+.+.++... .   +.+++.+ .+.++|+|||+++..
T Consensus       163 ~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~-~~~~~DvVi~~~g~~  240 (369)
T 2eez_A          163 GVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKK-SVQHADLLIGAVLVP  240 (369)
T ss_dssp             BBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHH-HHHHCSEEEECCC--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHH-HHhCCCEEEECCCCC
Confidence            467899999999999999999999999999999999999888776665431 1   2223333 234689999999865

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=97.80  E-value=6.4e-05  Score=71.39  Aligned_cols=77  Identities=23%  Similarity=0.309  Sum_probs=57.0

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH---CCcc----cchhc---cccc------CC
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHA----LSLAD---LENF------NP  439 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~---~~~~----~~~~~---l~~~------~~  439 (465)
                      ..+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++   +...    .|+.+   +.+.      ..
T Consensus         9 ~~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (260)
T 3awd_A            9 LRLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQE   88 (260)
T ss_dssp             GCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            3477899999998 59999999999999999999999998888777665   2221    12221   1110      12


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +..|+|||+++...
T Consensus        89 ~~id~vi~~Ag~~~  102 (260)
T 3awd_A           89 GRVDILVACAGICI  102 (260)
T ss_dssp             SCCCEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            46899999998754

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.79  E-value=0.0001  Score=74.62  Aligned_cols=69  Identities=22%  Similarity=0.275  Sum_probs=57.2

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecC
Q 012352          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTT  449 (465)
Q Consensus       378 ~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT  449 (465)
                      ++++|+|+|+|.|.+|+.++..|.+.|++|++++|+.+++++++++++...++.+++-.   .++|++|.|+
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v~~~~ll~---~~~DIvip~a  238 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYG---VTCDIFAPCA  238 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTT---CCCSEEEECS
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEChHHHhc---cCCcEeeccc
Confidence            68999999999999999999999999999999999999999999998765444333211   3578888775

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.79  E-value=2.5e-05  Score=79.54  Aligned_cols=75  Identities=27%  Similarity=0.291  Sum_probs=58.3

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc-c---chhcccccCCCCeeEEEecCCCCC
Q 012352          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA-L---SLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       378 ~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~-~---~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      .+.+++|+|+|+|++|++++..++..|++|++++|++++.+.+.+.++... .   ...++.+ .+.++|+||+|++...
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~-~l~~aDvVi~~~~~p~  243 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEG-AVKRADLVIGAVLVPG  243 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHH-HHHHCSEEEECCCCTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHH-HHcCCCEEEECCCcCC
Confidence            467899999999999999999999999999999999999888776666432 1   1223333 2346899999987654

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=97.79  E-value=3.8e-05  Score=74.28  Aligned_cols=76  Identities=22%  Similarity=0.318  Sum_probs=56.3

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEEC-------------CHHHHHHHHHHHC---Ccc----cchhc---
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR-------------TYDRARELAETVG---GHA----LSLAD---  433 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R-------------~~~~a~~la~~~~---~~~----~~~~~---  433 (465)
                      .+++|++||+|++ |+|++++..|++.|++|++++|             +.++.+++++.+.   ...    .|+.+   
T Consensus         8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~   87 (277)
T 3tsc_A            8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDR   87 (277)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence            5789999999985 9999999999999999999998             6777777766552   221    12221   


Q ss_pred             cccc------CCCCeeEEEecCCCCC
Q 012352          434 LENF------NPEDGMILANTTSIGM  453 (465)
Q Consensus       434 l~~~------~~~~~DilInaT~~gm  453 (465)
                      +.++      ..+..|+|||++++..
T Consensus        88 v~~~~~~~~~~~g~id~lvnnAg~~~  113 (277)
T 3tsc_A           88 LRKVVDDGVAALGRLDIIVANAGVAA  113 (277)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCC
Confidence            1110      2357899999998764

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=97.79  E-value=4.2e-05  Score=74.20  Aligned_cols=78  Identities=24%  Similarity=0.343  Sum_probs=57.6

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECC----------------HHHHHHHHHHHCC---cc----cchh
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT----------------YDRARELAETVGG---HA----LSLA  432 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~----------------~~~a~~la~~~~~---~~----~~~~  432 (465)
                      ..+++|+++|+|++ |+|++++..|++.|++|++++|+                .++++++++++..   ..    .|+.
T Consensus         7 ~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~   86 (286)
T 3uve_A            7 GRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVR   86 (286)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCC
Confidence            35789999999985 99999999999999999999887                7788887776632   11    1222


Q ss_pred             c---cccc------CCCCeeEEEecCCCCCC
Q 012352          433 D---LENF------NPEDGMILANTTSIGMQ  454 (465)
Q Consensus       433 ~---l~~~------~~~~~DilInaT~~gm~  454 (465)
                      +   +.++      ..+..|+|||++++...
T Consensus        87 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~  117 (286)
T 3uve_A           87 DYDALKAAVDSGVEQLGRLDIIVANAGIGNG  117 (286)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCcccCC
Confidence            1   1110      23578999999987643

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.79  E-value=3.3e-05  Score=72.99  Aligned_cols=76  Identities=28%  Similarity=0.363  Sum_probs=57.2

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC--c--c--cchhc---cccc------CCCC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG--H--A--LSLAD---LENF------NPED  441 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~--~--~--~~~~~---l~~~------~~~~  441 (465)
                      .+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++..  .  .  .++.+   +.+.      ..+.
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGP   82 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            367899999998 5999999999999999999999999988888777642  1  1  12221   1110      2346


Q ss_pred             eeEEEecCCCCC
Q 012352          442 GMILANTTSIGM  453 (465)
Q Consensus       442 ~DilInaT~~gm  453 (465)
                      .|+|||+++...
T Consensus        83 id~li~~Ag~~~   94 (251)
T 1zk4_A           83 VSTLVNNAGIAV   94 (251)
T ss_dssp             CCEEEECCCCCC
T ss_pred             CCEEEECCCCCC
Confidence            899999998764

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.78  E-value=2.4e-05  Score=75.43  Aligned_cols=75  Identities=24%  Similarity=0.360  Sum_probs=55.1

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH---CC---cc----cchhc---cccc------C
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV---GG---HA----LSLAD---LENF------N  438 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~---~~---~~----~~~~~---l~~~------~  438 (465)
                      +++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++++++   ..   ..    .|+.+   +.+.      .
T Consensus         4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (278)
T 1spx_A            4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   83 (278)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence            56899999998 59999999999999999999999999998888776   31   11    12221   1110      2


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|+|||+++...
T Consensus        84 ~g~id~lv~~Ag~~~   98 (278)
T 1spx_A           84 FGKLDILVNNAGAAI   98 (278)
T ss_dssp             HSCCCEEEECCC---
T ss_pred             cCCCCEEEECCCCCC
Confidence            347899999998754

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=97.78  E-value=3.1e-05  Score=75.60  Aligned_cols=47  Identities=30%  Similarity=0.389  Sum_probs=41.2

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEE-CCHHHHHHHHHHH
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIAN-RTYDRARELAETV  424 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~-R~~~~a~~la~~~  424 (465)
                      .+++|+++|+|++ |+|++++..|++.|++|++++ |+.++++++++++
T Consensus         6 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l   54 (291)
T 1e7w_A            6 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATL   54 (291)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHH
Confidence            4678999999984 999999999999999999999 9999988887765

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=97.78  E-value=3.3e-05  Score=73.26  Aligned_cols=75  Identities=31%  Similarity=0.462  Sum_probs=55.5

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEEC-CHHHHHHHHHHH---CCcc----cchhc---cccc------CCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYDRARELAETV---GGHA----LSLAD---LENF------NPE  440 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R-~~~~a~~la~~~---~~~~----~~~~~---l~~~------~~~  440 (465)
                      +++|+++|+|+ ||+|++++..|++.|++|+++.| +.++.+++++++   +...    .|+.+   +.+.      ..+
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (246)
T 2uvd_A            2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFG   81 (246)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46789999998 59999999999999999999999 888888877765   2221    12221   1110      235


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+|||+++...
T Consensus        82 ~id~lv~nAg~~~   94 (246)
T 2uvd_A           82 QVDILVNNAGVTK   94 (246)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CCCEEEECCCCCC
Confidence            7899999998753

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=97.78  E-value=2.7e-05  Score=75.83  Aligned_cols=77  Identities=26%  Similarity=0.313  Sum_probs=54.3

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHH-------HHHHHHHHH---CCcc----cchhc---cccc-
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYD-------RARELAETV---GGHA----LSLAD---LENF-  437 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~-------~a~~la~~~---~~~~----~~~~~---l~~~-  437 (465)
                      .++++|++||+|++ |+|++++..|++.|++|++++|+.+       +.+++++++   +...    .|+.+   +.++ 
T Consensus         5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~   84 (285)
T 3sc4_A            5 MSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAV   84 (285)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence            56789999999985 9999999999999999999999876       344444433   3221    13221   1110 


Q ss_pred             -----CCCCeeEEEecCCCCC
Q 012352          438 -----NPEDGMILANTTSIGM  453 (465)
Q Consensus       438 -----~~~~~DilInaT~~gm  453 (465)
                           ..+..|+|||++++..
T Consensus        85 ~~~~~~~g~id~lvnnAg~~~  105 (285)
T 3sc4_A           85 AKTVEQFGGIDICVNNASAIN  105 (285)
T ss_dssp             HHHHHHHSCCSEEEECCCCCC
T ss_pred             HHHHHHcCCCCEEEECCCCCC
Confidence                 2357899999998764

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=97.77  E-value=4.5e-05  Score=74.17  Aligned_cols=75  Identities=21%  Similarity=0.296  Sum_probs=55.8

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC----cc----cchhcc----ccc------C
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG----HA----LSLADL----ENF------N  438 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~----~~----~~~~~l----~~~------~  438 (465)
                      .+++|+|||+|+ ||+|++++..|++.|++|++++|+.++++++.+++..    ..    .|+.+.    ..+      .
T Consensus         9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A            9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            467899999998 5999999999999999999999999999888877631    11    233221    110      2


Q ss_pred             CCCeeEEEecCCCC
Q 012352          439 PEDGMILANTTSIG  452 (465)
Q Consensus       439 ~~~~DilInaT~~g  452 (465)
                      .+..|+|||++++.
T Consensus        89 ~g~iD~lv~nAg~~  102 (311)
T 3o26_A           89 FGKLDILVNNAGVA  102 (311)
T ss_dssp             HSSCCEEEECCCCC
T ss_pred             CCCCCEEEECCccc
Confidence            35789999999876

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.77  E-value=2.6e-05  Score=75.50  Aligned_cols=75  Identities=19%  Similarity=0.293  Sum_probs=56.5

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---C---cc----cchhc---cccc------C
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---G---HA----LSLAD---LENF------N  438 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~---~~----~~~~~---l~~~------~  438 (465)
                      +++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++++++.   .   ..    .|+.+   +.+.      .
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (280)
T 1xkq_A            4 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   83 (280)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence            56899999998 599999999999999999999999999888877662   1   11    12221   1110      2


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|+|||++++..
T Consensus        84 ~g~iD~lv~nAg~~~   98 (280)
T 1xkq_A           84 FGKIDVLVNNAGAAI   98 (280)
T ss_dssp             HSCCCEEEECCCCCC
T ss_pred             cCCCCEEEECCCCCC
Confidence            357899999998754

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=97.76  E-value=2.8e-05  Score=74.34  Aligned_cols=75  Identities=25%  Similarity=0.336  Sum_probs=55.1

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHH-HHHHHHHH----CCcc----cchhc---cccc------CC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDR-ARELAETV----GGHA----LSLAD---LENF------NP  439 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~-a~~la~~~----~~~~----~~~~~---l~~~------~~  439 (465)
                      +++|+++|+|+ ||+|++++..|++.|++|++++|+.++ .+++.+++    +...    .|+.+   +.+.      ..
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   81 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            45789999998 599999999999999999999999887 77776655    3221    13221   1110      23


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +..|+|||+++...
T Consensus        82 g~iD~lv~~Ag~~~   95 (260)
T 1x1t_A           82 GRIDILVNNAGIQH   95 (260)
T ss_dssp             SCCSEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            57899999998753

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=97.76  E-value=2.1e-05  Score=75.98  Aligned_cols=75  Identities=25%  Similarity=0.336  Sum_probs=56.8

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---cccc------CCCCeeE
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---LENF------NPEDGMI  444 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~Di  444 (465)
                      +.+|++||+|+ ||+|++++..|++.|++|++++|+.++.+++.++++...    .++.+   +.+.      ..+..|+
T Consensus         3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~   82 (281)
T 3m1a_A            3 ESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRVDV   82 (281)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCSE
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCCCCCE
Confidence            35789999998 599999999999999999999999999988888765421    23221   1110      2347899


Q ss_pred             EEecCCCCC
Q 012352          445 LANTTSIGM  453 (465)
Q Consensus       445 lInaT~~gm  453 (465)
                      |||+++...
T Consensus        83 lv~~Ag~~~   91 (281)
T 3m1a_A           83 LVNNAGRTQ   91 (281)
T ss_dssp             EEECCCCEE
T ss_pred             EEECCCcCC
Confidence            999998753

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=97.76  E-value=1.9e-05  Score=76.15  Aligned_cols=75  Identities=20%  Similarity=0.306  Sum_probs=52.9

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc--ccchhc---cccc------CCCCeeEE
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH--ALSLAD---LENF------NPEDGMIL  445 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~--~~~~~~---l~~~------~~~~~Dil  445 (465)
                      .+.+|++||+|+ ||+|++++..|++.|++|++++|+.++.+++... ...  ..|+.+   +.+.      ..+..|+|
T Consensus        13 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l   91 (266)
T 3p19_A           13 GSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNLP-NTLCAQVDVTDKYTFDTAITRAEKIYGPADAI   91 (266)
T ss_dssp             --CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTTCCT-TEEEEECCTTCHHHHHHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHhhcC-CceEEEecCCCHHHHHHHHHHHHHHCCCCCEE
Confidence            467899999998 5999999999999999999999998887654321 101  112211   1110      23579999


Q ss_pred             EecCCCCC
Q 012352          446 ANTTSIGM  453 (465)
Q Consensus       446 InaT~~gm  453 (465)
                      ||++++..
T Consensus        92 vnnAg~~~   99 (266)
T 3p19_A           92 VNNAGMML   99 (266)
T ss_dssp             EECCCCCC
T ss_pred             EECCCcCC
Confidence            99998764

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=97.76  E-value=4.5e-05  Score=73.62  Aligned_cols=77  Identities=23%  Similarity=0.304  Sum_probs=56.1

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECC------------HHHHHHHHHHH---CCcc----cchhc---
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT------------YDRARELAETV---GGHA----LSLAD---  433 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~------------~~~a~~la~~~---~~~~----~~~~~---  433 (465)
                      ..+++|++||+|+ ||+|++++..|++.|++|++++|+            .++.+++.+.+   +...    .|+.+   
T Consensus         9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~   88 (278)
T 3sx2_A            9 GPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRES   88 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHH
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHH
Confidence            4578999999998 499999999999999999999987            77777666544   3221    12221   


Q ss_pred             cccc------CCCCeeEEEecCCCCC
Q 012352          434 LENF------NPEDGMILANTTSIGM  453 (465)
Q Consensus       434 l~~~------~~~~~DilInaT~~gm  453 (465)
                      +.++      ..+..|+|||++++..
T Consensus        89 v~~~~~~~~~~~g~id~lv~nAg~~~  114 (278)
T 3sx2_A           89 LSAALQAGLDELGRLDIVVANAGIAP  114 (278)
T ss_dssp             HHHHHHHHHHHHCCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCC
Confidence            1110      2357899999998753

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=97.76  E-value=6.1e-05  Score=71.85  Aligned_cols=72  Identities=29%  Similarity=0.410  Sum_probs=54.5

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH---CCcc----cchhc---cccc------CCCCee
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHA----LSLAD---LENF------NPEDGM  443 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~---~~~~----~~~~~---l~~~------~~~~~D  443 (465)
                      +|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++++++   +...    .|+.+   +.+.      ..+..|
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   81 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD   81 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence            578999998 59999999999999999999999999888887765   2221    23221   1110      245799


Q ss_pred             EEEecCCCC
Q 012352          444 ILANTTSIG  452 (465)
Q Consensus       444 ilInaT~~g  452 (465)
                      +|||+++..
T Consensus        82 ~lv~nAg~~   90 (256)
T 1geg_A           82 VIVNNAGVA   90 (256)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999999875

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=97.75  E-value=2e-05  Score=76.60  Aligned_cols=77  Identities=29%  Similarity=0.304  Sum_probs=55.4

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCH-HHHHHHHHHHC----Ccc----cchhc-------cccc--
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTY-DRARELAETVG----GHA----LSLAD-------LENF--  437 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~-~~a~~la~~~~----~~~----~~~~~-------l~~~--  437 (465)
                      ..+++|+++|+|++ |+|++++..|++.|++|++++|+. ++++++++++.    ...    .|+.+       +.++  
T Consensus        19 ~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~   98 (288)
T 2x9g_A           19 SHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIIN   98 (288)
T ss_dssp             ---CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHH
Confidence            45788999999984 999999999999999999999998 88877776652    211    12222       1110  


Q ss_pred             ----CCCCeeEEEecCCCCC
Q 012352          438 ----NPEDGMILANTTSIGM  453 (465)
Q Consensus       438 ----~~~~~DilInaT~~gm  453 (465)
                          ..+..|+|||++++..
T Consensus        99 ~~~~~~g~iD~lvnnAG~~~  118 (288)
T 2x9g_A           99 SCFRAFGRCDVLVNNASAFY  118 (288)
T ss_dssp             HHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHhcCCCCEEEECCCCCC
Confidence                2357899999998754

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.75  E-value=3e-05  Score=73.38  Aligned_cols=77  Identities=29%  Similarity=0.405  Sum_probs=57.3

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---cccc------CC
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---LENF------NP  439 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l~~~------~~  439 (465)
                      ..+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++.   ...    .|+.+   +.+.      ..
T Consensus         7 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   86 (255)
T 1fmc_A            7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            4578899999998 599999999999999999999999998888776652   221    12221   1110      13


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      ++.|+|||+++...
T Consensus        87 ~~~d~vi~~Ag~~~  100 (255)
T 1fmc_A           87 GKVDILVNNAGGGG  100 (255)
T ss_dssp             SSCCEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            47899999998754

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.74  E-value=8.7e-05  Score=63.29  Aligned_cols=71  Identities=21%  Similarity=0.329  Sum_probs=54.0

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCccc--ch---hcccccCCCCeeEEEecCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL--SL---ADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~--~~---~~l~~~~~~~~DilInaT~~  451 (465)
                      +.+++|+|+|.+|+.++..|.+.|.+|++++|++++.+.+.+.++...+  +.   +.+.+....++|+||.+++.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~   79 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGK   79 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCC
Confidence            3589999999999999999999999999999999998888766553221  21   22222135679999999874

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=97.74  E-value=7e-05  Score=73.35  Aligned_cols=77  Identities=18%  Similarity=0.274  Sum_probs=56.4

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECC------------HHHHHHHHHHHC---Ccc----cchhc---
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT------------YDRARELAETVG---GHA----LSLAD---  433 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~------------~~~a~~la~~~~---~~~----~~~~~---  433 (465)
                      ..+++|++||+|++ |+|++++..|++.|++|++++|+            .++++++++++.   ...    .|+.+   
T Consensus        24 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~  103 (299)
T 3t7c_A           24 GKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDA  103 (299)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred             cccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHH
Confidence            35789999999985 99999999999999999999887            777777766552   221    22221   


Q ss_pred             cccc------CCCCeeEEEecCCCCC
Q 012352          434 LENF------NPEDGMILANTTSIGM  453 (465)
Q Consensus       434 l~~~------~~~~~DilInaT~~gm  453 (465)
                      +.++      ..+..|+|||++++..
T Consensus       104 v~~~~~~~~~~~g~iD~lv~nAg~~~  129 (299)
T 3t7c_A          104 MQAAVDDGVTQLGRLDIVLANAALAS  129 (299)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCCC
Confidence            1110      2357899999998764

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=97.74  E-value=3.8e-05  Score=75.37  Aligned_cols=140  Identities=17%  Similarity=0.273  Sum_probs=85.9

Q ss_pred             eeecCC-CccccccHHHHHHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCch-------HHHhhhc
Q 012352          256 FGIIGK-PVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHK-------EAAVKCC  322 (465)
Q Consensus       256 ~~~iG~-pi~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K-------~~v~~~~  322 (465)
                      .-++|+ |-+++.- ..-.+..++.|+......+.-    +++.+.++.+ .++.+.|+.|..|.-       ..++..+
T Consensus        40 vilvG~dpaS~~Yv-~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~~~id~~~i~~~I  118 (301)
T 1a4i_A           40 ILQVGNRDDSNLYI-NVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAI  118 (301)
T ss_dssp             EEEESCCHHHHHHH-HHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSSCCCSSCCCHHHHHHTS
T ss_pred             EEEeCCChhHHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCcEEEEeccCCCCCccCHHHHHhcc
Confidence            345663 3333222 233567899999876555433    2677777777 688999999999862       2233222


Q ss_pred             cccCHHHHhccceeeEEEeccCCeEE-EE------eccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccch-hHH
Q 012352          323 DEVDTVAKSIGAVNCIIRRQSDGKLF-GY------NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGK  394 (465)
Q Consensus       323 d~~~~~A~~~gavNtv~~~~~~g~l~-G~------NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg-~g~  394 (465)
                         ++ .+.+...+.+-    -|+++ |.      -.--.|++..|++.           +.++.+++|+|+|+|. +|+
T Consensus       119 ---~p-~KDVDG~hp~N----~G~l~~g~~~~~~~PcTp~gi~~ll~~~-----------~i~l~gk~vvVIG~s~iVG~  179 (301)
T 1a4i_A          119 ---AP-EKDVDGLTSIN----AGRLARGDLNDCFIPCTPKGCLELIKET-----------GVPIAGRHAVVVGRSKIVGA  179 (301)
T ss_dssp             ---CG-GGBTTCCSHHH----HHHHHTTCCSSCCCCHHHHHHHHHHHTT-----------TCCCTTCEEEEECCCTTTHH
T ss_pred             ---CC-CCCccCCChhh----HHHHhcCCCCCCccCchHHHHHHHHHHc-----------CCCCCCCEEEEECCCchHHH
Confidence               11 01111111110    01110 10      11256777777653           2578999999999996 799


Q ss_pred             HHHHHHHHCCCeEEEEECCHH
Q 012352          395 ALAYGAKAKGARVVIANRTYD  415 (465)
Q Consensus       395 ai~~~L~~~G~~v~i~~R~~~  415 (465)
                      .++..|...|++|++++++..
T Consensus       180 p~A~lL~~~gAtVtv~hs~t~  200 (301)
T 1a4i_A          180 PMHDLLLWNNATVTTCHSKTA  200 (301)
T ss_dssp             HHHHHHHHTTCEEEEECTTCS
T ss_pred             HHHHHHHhCCCeEEEEECCcc
Confidence            999999999999999987543

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=97.73  E-value=8.1e-05  Score=72.20  Aligned_cols=77  Identities=18%  Similarity=0.226  Sum_probs=57.7

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---cccc------CC
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---LENF------NP  439 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l~~~------~~  439 (465)
                      ..+++|+++|+|+ ||+|++++..|++.|++|+++.|+.++.+++.+++.   ...    .|+.+   +.+.      ..
T Consensus        40 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~  119 (285)
T 2c07_A           40 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEH  119 (285)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhc
Confidence            4577899999988 599999999999999999999999998888877662   221    12221   1110      23


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +..|+|||+++...
T Consensus       120 ~~id~li~~Ag~~~  133 (285)
T 2c07_A          120 KNVDILVNNAGITR  133 (285)
T ss_dssp             SCCCEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            57899999998763

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=97.73  E-value=5.2e-05  Score=73.34  Aligned_cols=77  Identities=30%  Similarity=0.359  Sum_probs=55.4

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEE-CCHHHHHHHHHHHC---Ccc----cchhc---cccc------C
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIAN-RTYDRARELAETVG---GHA----LSLAD---LENF------N  438 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~-R~~~~a~~la~~~~---~~~----~~~~~---l~~~------~  438 (465)
                      ..+++|++||+|++ |+|++++..|++.|++|+++. |+.++.+++++++.   ...    .++.+   +.+.      .
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  106 (271)
T 3v2g_A           27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEA  106 (271)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            45789999999985 999999999999999998885 55677777776652   221    12211   1110      2


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|+|||++++..
T Consensus       107 ~g~iD~lvnnAg~~~  121 (271)
T 3v2g_A          107 LGGLDILVNSAGIWH  121 (271)
T ss_dssp             HSCCCEEEECCCCCC
T ss_pred             cCCCcEEEECCCCCC
Confidence            357899999998754

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=97.72  E-value=5.7e-05  Score=73.15  Aligned_cols=76  Identities=24%  Similarity=0.337  Sum_probs=55.8

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC--cc----cchhc---cc----cc--CCC
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG--HA----LSLAD---LE----NF--NPE  440 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~--~~----~~~~~---l~----~~--~~~  440 (465)
                      ..++ |++||+|++ |+|++++..|++.|++|++++|+.++++++++++..  ..    .|+.+   +.    ..  ..+
T Consensus        18 ~~~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   96 (272)
T 2nwq_A           18 SHMS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFA   96 (272)
T ss_dssp             ---C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGS
T ss_pred             CCcC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            3455 899999984 999999999999999999999999999998887742  11    12211   11    10  245


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+|||++++..
T Consensus        97 ~iD~lvnnAG~~~  109 (272)
T 2nwq_A           97 TLRGLINNAGLAL  109 (272)
T ss_dssp             SCCEEEECCCCCC
T ss_pred             CCCEEEECCCCCC
Confidence            7899999998753

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=97.72  E-value=3.6e-05  Score=73.56  Aligned_cols=76  Identities=21%  Similarity=0.271  Sum_probs=56.6

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---cccc------CC
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---LENF------NP  439 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l~~~------~~  439 (465)
                      ..+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++.   ...    .++.+   +.+.      ..
T Consensus        10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   89 (260)
T 2zat_A           10 KPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLH   89 (260)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            3477899999998 599999999999999999999999998887776652   211    12211   1110      23


Q ss_pred             CCeeEEEecCCCC
Q 012352          440 EDGMILANTTSIG  452 (465)
Q Consensus       440 ~~~DilInaT~~g  452 (465)
                      +..|+|||+++..
T Consensus        90 g~iD~lv~~Ag~~  102 (260)
T 2zat_A           90 GGVDILVSNAAVN  102 (260)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            5789999999864

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.72  E-value=5.9e-05  Score=72.90  Aligned_cols=77  Identities=18%  Similarity=0.256  Sum_probs=56.0

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECC------------HHHHHHHHHHH---CCcc----cchhc---
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT------------YDRARELAETV---GGHA----LSLAD---  433 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~------------~~~a~~la~~~---~~~~----~~~~~---  433 (465)
                      ..+++|++||+|++ |+|++++..|++.|++|++++|+            .++.+++..++   +...    .|+.+   
T Consensus         6 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~   85 (287)
T 3pxx_A            6 GRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAA   85 (287)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHH
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHH
Confidence            45789999999985 99999999999999999999997            67776666554   2221    23221   


Q ss_pred             cccc------CCCCeeEEEecCCCCC
Q 012352          434 LENF------NPEDGMILANTTSIGM  453 (465)
Q Consensus       434 l~~~------~~~~~DilInaT~~gm  453 (465)
                      +.++      ..+..|+|||++++..
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~  111 (287)
T 3pxx_A           86 VSRELANAVAEFGKLDVVVANAGICP  111 (287)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCc
Confidence            1110      2357899999998754

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=97.71  E-value=3.7e-05  Score=73.75  Aligned_cols=74  Identities=24%  Similarity=0.328  Sum_probs=55.4

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEE-ECCHHHHHHHHHHHCC---cc----cchhc---cccc------CCCC
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIA-NRTYDRARELAETVGG---HA----LSLAD---LENF------NPED  441 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~-~R~~~~a~~la~~~~~---~~----~~~~~---l~~~------~~~~  441 (465)
                      ++|++||+|+ ||+|++++..|++.|++|++. +|+.++++++++++..   ..    .|+.+   +.++      ..+.
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFGR   82 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4789999998 599999999999999998886 9999999988887632   21    12221   1110      2357


Q ss_pred             eeEEEecCCCCC
Q 012352          442 GMILANTTSIGM  453 (465)
Q Consensus       442 ~DilInaT~~gm  453 (465)
                      .|+|||+++++.
T Consensus        83 id~lv~nAg~~~   94 (258)
T 3oid_A           83 LDVFVNNAASGV   94 (258)
T ss_dssp             CCEEEECCCCCC
T ss_pred             CCEEEECCCCCC
Confidence            899999998754

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=97.71  E-value=6.8e-05  Score=73.42  Aligned_cols=77  Identities=21%  Similarity=0.256  Sum_probs=54.5

Q ss_pred             cccCCcEEEEEccc---hhHHHHHHHHHHCCCeEEEEECCHHHHH---HHHHHHCCc-c--cchhc---cccc------C
Q 012352          377 SALAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYDRAR---ELAETVGGH-A--LSLAD---LENF------N  438 (465)
Q Consensus       377 ~~l~~k~vlV~GaG---g~g~ai~~~L~~~G~~v~i~~R~~~~a~---~la~~~~~~-~--~~~~~---l~~~------~  438 (465)
                      ..+++|++||+|++   |+|++++..|++.|++|++++|+.+..+   ++.+..+.. .  .|+.+   +.++      .
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEE  105 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45789999999985   9999999999999999999999975433   344444421 1  22221   1110      2


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|+|||++++..
T Consensus       106 ~g~iD~lVnnAG~~~  120 (296)
T 3k31_A          106 WGSLDFVVHAVAFSD  120 (296)
T ss_dssp             HSCCSEEEECCCCCC
T ss_pred             cCCCCEEEECCCcCC
Confidence            357899999998753

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=97.71  E-value=5.2e-05  Score=72.44  Aligned_cols=77  Identities=19%  Similarity=0.060  Sum_probs=56.3

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---cccc------CC
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---LENF------NP  439 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l~~~------~~  439 (465)
                      ..+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++.   ...    .++.+   +.+.      ..
T Consensus        10 ~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   89 (266)
T 1xq1_A           10 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMF   89 (266)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            4578899999988 599999999999999999999999998888776652   211    12221   1110      12


Q ss_pred             -CCeeEEEecCCCCC
Q 012352          440 -EDGMILANTTSIGM  453 (465)
Q Consensus       440 -~~~DilInaT~~gm  453 (465)
                       +..|+|||+++...
T Consensus        90 ~~~id~li~~Ag~~~  104 (266)
T 1xq1_A           90 GGKLDILINNLGAIR  104 (266)
T ss_dssp             TTCCSEEEEECCC--
T ss_pred             CCCCcEEEECCCCCC
Confidence             57899999998753

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.71  E-value=3.5e-05  Score=75.57  Aligned_cols=76  Identities=22%  Similarity=0.337  Sum_probs=57.0

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---C---cc----cchhc---cccc------
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---G---HA----LSLAD---LENF------  437 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~---~~----~~~~~---l~~~------  437 (465)
                      .+++|++||+|+ ||+|++++..|++.|++|++++|+.++++++++++.   .   ..    .|+.+   +.+.      
T Consensus        23 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  102 (297)
T 1xhl_A           23 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA  102 (297)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            467899999998 599999999999999999999999999888877652   1   11    12221   1110      


Q ss_pred             CCCCeeEEEecCCCCC
Q 012352          438 NPEDGMILANTTSIGM  453 (465)
Q Consensus       438 ~~~~~DilInaT~~gm  453 (465)
                      ..+..|+|||++++..
T Consensus       103 ~~g~iD~lvnnAG~~~  118 (297)
T 1xhl_A          103 KFGKIDILVNNAGANL  118 (297)
T ss_dssp             HHSCCCEEEECCCCCC
T ss_pred             hcCCCCEEEECCCcCc
Confidence            2357899999998754

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=97.70  E-value=6.6e-05  Score=72.01  Aligned_cols=74  Identities=26%  Similarity=0.366  Sum_probs=55.4

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-----cc----cchhc---cccc------CC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-----HA----LSLAD---LENF------NP  439 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-----~~----~~~~~---l~~~------~~  439 (465)
                      +++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++..     ..    .|+.+   +.+.      ..
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            56899999998 5999999999999999999999999988877766632     11    12221   1110      23


Q ss_pred             CCeeEEEecCCCC
Q 012352          440 EDGMILANTTSIG  452 (465)
Q Consensus       440 ~~~DilInaT~~g  452 (465)
                      +..|+|||+++..
T Consensus        85 g~id~lv~~Ag~~   97 (267)
T 2gdz_A           85 GRLDILVNNAGVN   97 (267)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            5689999999865

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=97.70  E-value=5.2e-05  Score=71.56  Aligned_cols=72  Identities=26%  Similarity=0.301  Sum_probs=54.1

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH-C---Ccc----cchhc---cccc------CCCCe
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV-G---GHA----LSLAD---LENF------NPEDG  442 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~-~---~~~----~~~~~---l~~~------~~~~~  442 (465)
                      +|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++ .   ...    .|+.+   +.+.      ..++.
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   81 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGAI   81 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            578999988 59999999999999999999999999988887776 2   111    12221   1110      23478


Q ss_pred             eEEEecCCCC
Q 012352          443 MILANTTSIG  452 (465)
Q Consensus       443 DilInaT~~g  452 (465)
                      |+|||+++..
T Consensus        82 d~li~~Ag~~   91 (250)
T 2cfc_A           82 DVLVNNAGIT   91 (250)
T ss_dssp             CEEEECCCCC
T ss_pred             CEEEECCCCC
Confidence            9999999865

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=97.69  E-value=3.2e-05  Score=72.86  Aligned_cols=76  Identities=30%  Similarity=0.447  Sum_probs=56.4

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH----CCcc----cchhc---cccc------CC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV----GGHA----LSLAD---LENF------NP  439 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~----~~~~----~~~~~---l~~~------~~  439 (465)
                      .+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++    +...    .++.+   +.+.      ..
T Consensus         4 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (248)
T 2pnf_A            4 KLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLV   83 (248)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence            467899999988 59999999999999999999999998888776654    3221    12221   1110      23


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      ++.|+|||+++...
T Consensus        84 ~~~d~vi~~Ag~~~   97 (248)
T 2pnf_A           84 DGIDILVNNAGITR   97 (248)
T ss_dssp             SCCSEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            57899999998753

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=97.69  E-value=4.2e-05  Score=73.48  Aligned_cols=77  Identities=18%  Similarity=0.202  Sum_probs=56.0

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEEC---CHHHHHHHHHHHCC---cc----cchh---ccccc-----
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR---TYDRARELAETVGG---HA----LSLA---DLENF-----  437 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R---~~~~a~~la~~~~~---~~----~~~~---~l~~~-----  437 (465)
                      .++++|++||+|++ |+|++++..|++.|++|+++.|   +.++++++++++..   ..    .|+.   ++.++     
T Consensus         7 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   86 (262)
T 3ksu_A            7 HDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAE   86 (262)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence            56889999999985 9999999999999999999866   45677777776632   21    1221   11110     


Q ss_pred             -CCCCeeEEEecCCCCC
Q 012352          438 -NPEDGMILANTTSIGM  453 (465)
Q Consensus       438 -~~~~~DilInaT~~gm  453 (465)
                       ..+..|+|||++++..
T Consensus        87 ~~~g~iD~lvnnAg~~~  103 (262)
T 3ksu_A           87 KEFGKVDIAINTVGKVL  103 (262)
T ss_dssp             HHHCSEEEEEECCCCCC
T ss_pred             HHcCCCCEEEECCCCCC
Confidence             2357999999998764

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=97.69  E-value=4.9e-05  Score=73.40  Aligned_cols=77  Identities=26%  Similarity=0.381  Sum_probs=56.3

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEEC-CHHHHHHHHHHHC---Ccc----cchhc---cccc------C
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYDRARELAETVG---GHA----LSLAD---LENF------N  438 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R-~~~~a~~la~~~~---~~~----~~~~~---l~~~------~  438 (465)
                      .++++|++||+|+ ||+|++++..|++.|++|++..| +.++.+++.+++.   ...    .|+.+   +.++      .
T Consensus        24 ~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~  103 (269)
T 4dmm_A           24 LPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIER  103 (269)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            3578999999998 59999999999999999999888 7777777776652   221    12221   1110      2


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|+|||++++..
T Consensus       104 ~g~id~lv~nAg~~~  118 (269)
T 4dmm_A          104 WGRLDVLVNNAGITR  118 (269)
T ss_dssp             HSCCCEEEECCCCCC
T ss_pred             cCCCCEEEECCCCCC
Confidence            357899999998764

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.68  E-value=2.8e-05  Score=73.72  Aligned_cols=74  Identities=26%  Similarity=0.420  Sum_probs=54.9

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-cc--cchh---ccccc--CCCCeeEEEecC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-HA--LSLA---DLENF--NPEDGMILANTT  449 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-~~--~~~~---~l~~~--~~~~~DilInaT  449 (465)
                      +++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++. ++.. ..  .|+.   ++.+.  ..+..|+|||++
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~id~lv~~A   82 (246)
T 2ag5_A            4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-KYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVA   82 (246)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG-GSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hccCceEEEeeCCCHHHHHHHHHHhCCCCEEEECC
Confidence            57899999998 59999999999999999999999998877765 4421 11  2222   12110  246789999999


Q ss_pred             CCCC
Q 012352          450 SIGM  453 (465)
Q Consensus       450 ~~gm  453 (465)
                      +...
T Consensus        83 g~~~   86 (246)
T 2ag5_A           83 GFVH   86 (246)
T ss_dssp             CCCC
T ss_pred             ccCC
Confidence            8753

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=97.68  E-value=7.1e-06  Score=79.33  Aligned_cols=73  Identities=19%  Similarity=0.267  Sum_probs=50.6

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchh---cc-------cccCCCCeeEE
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA---DL-------ENFNPEDGMIL  445 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~---~l-------~~~~~~~~Dil  445 (465)
                      ..+++|++||+|++ |+|++++..|++.|++|++++|+.++....+..+   ..|+.   ++       .+ ..+..|+|
T Consensus        10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~Dv~~~~~v~~~~~~~~~-~~g~iD~l   85 (269)
T 3vtz_A           10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHF---KIDVTNEEEVKEAVEKTTK-KYGRIDIL   85 (269)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CTTSSEEE---ECCTTCHHHHHHHHHHHHH-HHSCCCEE
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhccCceeEE---EecCCCHHHHHHHHHHHHH-HcCCCCEE
Confidence            56789999999985 9999999999999999999999876542211000   11221   11       11 23578999


Q ss_pred             EecCCCCC
Q 012352          446 ANTTSIGM  453 (465)
Q Consensus       446 InaT~~gm  453 (465)
                      ||++++..
T Consensus        86 v~nAg~~~   93 (269)
T 3vtz_A           86 VNNAGIEQ   93 (269)
T ss_dssp             EECCCCCC
T ss_pred             EECCCcCC
Confidence            99998753

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=97.68  E-value=8e-05  Score=71.32  Aligned_cols=75  Identities=24%  Similarity=0.251  Sum_probs=54.9

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEE-ECCHHHHHHHHHHHC---Ccc----cchhc---cccc------CC
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA-NRTYDRARELAETVG---GHA----LSLAD---LENF------NP  439 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~-~R~~~~a~~la~~~~---~~~----~~~~~---l~~~------~~  439 (465)
                      .+++|++||+|++ |+|++++..|++.|++|+++ .|+.++.++..+++.   ...    .|+.+   +.++      ..
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKF   84 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            4779999999985 99999999999999999888 777777777766653   211    13221   1110      24


Q ss_pred             CCeeEEEecCCCC
Q 012352          440 EDGMILANTTSIG  452 (465)
Q Consensus       440 ~~~DilInaT~~g  452 (465)
                      +..|+|||+++..
T Consensus        85 g~id~lv~nAg~~   97 (259)
T 3edm_A           85 GEIHGLVHVAGGL   97 (259)
T ss_dssp             CSEEEEEECCCCC
T ss_pred             CCCCEEEECCCcc
Confidence            5799999999865

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=97.68  E-value=6.9e-05  Score=71.87  Aligned_cols=77  Identities=22%  Similarity=0.327  Sum_probs=57.9

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC--cc----cchhc---cccc------CCC
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG--HA----LSLAD---LENF------NPE  440 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~--~~----~~~~~---l~~~------~~~  440 (465)
                      ..+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.++++.  ..    .|+.+   +.+.      ..+
T Consensus        12 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   91 (278)
T 2bgk_A           12 NRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHG   91 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4578899999998 5999999999999999999999999888888877743  11    12221   1110      134


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+|||+++...
T Consensus        92 ~id~li~~Ag~~~  104 (278)
T 2bgk_A           92 KLDIMFGNVGVLS  104 (278)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CCCEEEECCcccC
Confidence            7899999998653

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=97.67  E-value=9.1e-05  Score=71.90  Aligned_cols=75  Identities=20%  Similarity=0.212  Sum_probs=54.4

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEEC-CHHHHHHHHHHHC---Ccc----cchhc---cccc------CC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYDRARELAETVG---GHA----LSLAD---LENF------NP  439 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R-~~~~a~~la~~~~---~~~----~~~~~---l~~~------~~  439 (465)
                      .+.+|++||+|+ ||+|++++..|++.|++|++++| +.++++++++++.   ...    .|+.+   +.++      ..
T Consensus        26 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  105 (280)
T 4da9_A           26 QKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEF  105 (280)
T ss_dssp             CCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHH
T ss_pred             ccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            467899999998 49999999999999999999985 8888888777663   221    13222   1110      23


Q ss_pred             CCeeEEEecCCCC
Q 012352          440 EDGMILANTTSIG  452 (465)
Q Consensus       440 ~~~DilInaT~~g  452 (465)
                      +..|+|||++++.
T Consensus       106 g~iD~lvnnAg~~  118 (280)
T 4da9_A          106 GRIDCLVNNAGIA  118 (280)
T ss_dssp             SCCCEEEEECC--
T ss_pred             CCCCEEEECCCcc
Confidence            5789999999874

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=97.67  E-value=5.1e-05  Score=74.02  Aligned_cols=76  Identities=25%  Similarity=0.364  Sum_probs=56.7

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC--------Ccc----cchh---ccccc---
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG--------GHA----LSLA---DLENF---  437 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~--------~~~----~~~~---~l~~~---  437 (465)
                      ..+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++.        ...    .++.   ++.+.   
T Consensus        14 ~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~   93 (303)
T 1yxm_A           14 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS   93 (303)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHH
Confidence            3578899999998 599999999999999999999999998888777652        111    1221   11110   


Q ss_pred             ---CCCCeeEEEecCCCC
Q 012352          438 ---NPEDGMILANTTSIG  452 (465)
Q Consensus       438 ---~~~~~DilInaT~~g  452 (465)
                         ..+..|+|||+++..
T Consensus        94 ~~~~~g~id~li~~Ag~~  111 (303)
T 1yxm_A           94 TLDTFGKINFLVNNGGGQ  111 (303)
T ss_dssp             HHHHHSCCCEEEECCCCC
T ss_pred             HHHHcCCCCEEEECCCCC
Confidence               234689999999864

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=97.66  E-value=8.7e-05  Score=71.70  Aligned_cols=77  Identities=30%  Similarity=0.362  Sum_probs=54.0

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHH-------HHHHHHHH---CCcc----cchhc---cccc-
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDR-------ARELAETV---GGHA----LSLAD---LENF-  437 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~-------a~~la~~~---~~~~----~~~~~---l~~~-  437 (465)
                      .++++|+++|+|++ |+|++++..|++.|++|++++|+.++       .+++++++   +...    .|+.+   +.++ 
T Consensus         2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~   81 (274)
T 3e03_A            2 LTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAV   81 (274)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHH
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHH
Confidence            35789999999985 99999999999999999999998653       34444333   3221    22221   1110 


Q ss_pred             -----CCCCeeEEEecCCCCC
Q 012352          438 -----NPEDGMILANTTSIGM  453 (465)
Q Consensus       438 -----~~~~~DilInaT~~gm  453 (465)
                           ..+..|+|||++++..
T Consensus        82 ~~~~~~~g~iD~lvnnAG~~~  102 (274)
T 3e03_A           82 AATVDTFGGIDILVNNASAIW  102 (274)
T ss_dssp             HHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHcCCCCEEEECCCccc
Confidence                 2357899999998764

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.66  E-value=0.00015  Score=75.87  Aligned_cols=69  Identities=33%  Similarity=0.391  Sum_probs=50.9

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~  450 (465)
                      ..+.||+|+|+|+|++|++++..|+..|++|++++|++.++.+.+.. +....+   +.+ ....+|+++.+++
T Consensus       261 ~~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~-g~dv~~---lee-~~~~aDvVi~atG  329 (488)
T 3ond_A          261 VMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATME-GLQVLT---LED-VVSEADIFVTTTG  329 (488)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT-TCEECC---GGG-TTTTCSEEEECSS
T ss_pred             CcccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHh-CCccCC---HHH-HHHhcCEEEeCCC
Confidence            46889999999999999999999999999999999999887766543 222122   222 2334566666554

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=97.66  E-value=4e-05  Score=73.72  Aligned_cols=76  Identities=18%  Similarity=0.211  Sum_probs=55.3

Q ss_pred             ccCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEECCHHH-HHHHHHHHCCcc----cchhc---cccc------CCC
Q 012352          378 ALAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTYDR-ARELAETVGGHA----LSLAD---LENF------NPE  440 (465)
Q Consensus       378 ~l~~k~vlV~Ga---Gg~g~ai~~~L~~~G~~v~i~~R~~~~-a~~la~~~~~~~----~~~~~---l~~~------~~~  440 (465)
                      .+++|+++|+|+   ||+|++++..|++.|++|++++|+.++ .+++.++++...    .|+.+   +.++      ..+
T Consensus         4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   83 (269)
T 2h7i_A            4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIG   83 (269)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhC
Confidence            367899999995   799999999999999999999999876 466666654321    23221   1110      234


Q ss_pred             ---CeeEEEecCCCCC
Q 012352          441 ---DGMILANTTSIGM  453 (465)
Q Consensus       441 ---~~DilInaT~~gm  453 (465)
                         ..|+|||++++..
T Consensus        84 ~~~~iD~lv~nAg~~~   99 (269)
T 2h7i_A           84 AGNKLDGVVHSIGFMP   99 (269)
T ss_dssp             TTCCEEEEEECCCCCC
T ss_pred             CCCCceEEEECCccCc
Confidence               7999999998753

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=97.66  E-value=0.00011  Score=70.54  Aligned_cols=74  Identities=18%  Similarity=0.224  Sum_probs=53.4

Q ss_pred             cCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEECCH---HHHHHHHHHHCCc-c--cchhc---c-------cccCC
Q 012352          379 LAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTY---DRARELAETVGGH-A--LSLAD---L-------ENFNP  439 (465)
Q Consensus       379 l~~k~vlV~Ga---Gg~g~ai~~~L~~~G~~v~i~~R~~---~~a~~la~~~~~~-~--~~~~~---l-------~~~~~  439 (465)
                      +++|++||+|+   ||+|++++..|++.|++|++++|+.   +..+++.+..+.. .  .|+.+   +       .+ ..
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~-~~   85 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGK-VW   85 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHT-TC
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHH-Hc
Confidence            67899999997   5999999999999999999999987   4444554443321 1  12221   1       12 35


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +..|+|||++++..
T Consensus        86 g~iD~lv~~Ag~~~   99 (265)
T 1qsg_A           86 PKFDGFVHSIGFAP   99 (265)
T ss_dssp             SSEEEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            67999999998753

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=97.65  E-value=8.7e-05  Score=71.60  Aligned_cols=75  Identities=15%  Similarity=0.254  Sum_probs=53.5

Q ss_pred             cCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEECCHH---HHHHHHHHHCC-cc--cchhc---cccc------CCC
Q 012352          379 LAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTYD---RARELAETVGG-HA--LSLAD---LENF------NPE  440 (465)
Q Consensus       379 l~~k~vlV~Ga---Gg~g~ai~~~L~~~G~~v~i~~R~~~---~a~~la~~~~~-~~--~~~~~---l~~~------~~~  440 (465)
                      +++|+++|+|+   ||+|++++..|++.|++|++++|+.+   ..+++.+..+. ..  .|+.+   +.+.      ..+
T Consensus         4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   83 (275)
T 2pd4_A            4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG   83 (275)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            56899999997   59999999999999999999999875   44555544432 11  22221   1110      246


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+|||++++..
T Consensus        84 ~id~lv~nAg~~~   96 (275)
T 2pd4_A           84 SLDFIVHSVAFAP   96 (275)
T ss_dssp             CEEEEEECCCCCC
T ss_pred             CCCEEEECCccCc
Confidence            7999999998753

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=97.65  E-value=6.9e-05  Score=71.55  Aligned_cols=73  Identities=22%  Similarity=0.326  Sum_probs=53.9

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHH--HHHHHHHHC---Ccc----cchhc---cccc------CCCC
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDR--ARELAETVG---GHA----LSLAD---LENF------NPED  441 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~--a~~la~~~~---~~~----~~~~~---l~~~------~~~~  441 (465)
                      +|+++|+|+ ||+|++++..|++.|++|++++|+.++  ++++++++.   ...    .|+.+   +.+.      ..+.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   81 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLGG   81 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            589999998 599999999999999999999999887  777776662   221    13221   1110      2357


Q ss_pred             eeEEEecCCCCC
Q 012352          442 GMILANTTSIGM  453 (465)
Q Consensus       442 ~DilInaT~~gm  453 (465)
                      .|+|||+++...
T Consensus        82 iD~lv~nAg~~~   93 (258)
T 3a28_C           82 FDVLVNNAGIAQ   93 (258)
T ss_dssp             CCEEEECCCCCC
T ss_pred             CCEEEECCCCCC
Confidence            899999998753

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=97.65  E-value=7.6e-05  Score=73.86  Aligned_cols=77  Identities=25%  Similarity=0.330  Sum_probs=55.7

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECC------------HHHHHHHHHHH---CCcc----cchhc---
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT------------YDRARELAETV---GGHA----LSLAD---  433 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~------------~~~a~~la~~~---~~~~----~~~~~---  433 (465)
                      ..+++|++||+|++ |+|++++..|++.|++|++++|+            .++++++++.+   +...    .|+.+   
T Consensus        42 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~  121 (317)
T 3oec_A           42 NRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLAS  121 (317)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence            35789999999985 99999999999999999999876            67777766554   2221    12221   


Q ss_pred             cccc------CCCCeeEEEecCCCCC
Q 012352          434 LENF------NPEDGMILANTTSIGM  453 (465)
Q Consensus       434 l~~~------~~~~~DilInaT~~gm  453 (465)
                      +.++      ..+..|+|||++++..
T Consensus       122 v~~~~~~~~~~~g~iD~lVnnAg~~~  147 (317)
T 3oec_A          122 LQAVVDEALAEFGHIDILVSNVGISN  147 (317)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCC
Confidence            1110      2357899999998764

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.65  E-value=1.9e-05  Score=75.80  Aligned_cols=72  Identities=15%  Similarity=0.235  Sum_probs=54.5

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCH-------------------HHHHHHHHHHCC---c--ccc---
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY-------------------DRARELAETVGG---H--ALS---  430 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~-------------------~~a~~la~~~~~---~--~~~---  430 (465)
                      +.+++|+|+|+||+|..++..|+..|+ +|++++++.                   .|++.+++++..   .  ...   
T Consensus        29 l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~  108 (249)
T 1jw9_B           29 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA  108 (249)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             HhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEec
Confidence            556899999999999999999999998 999999998                   888888776631   1  111   


Q ss_pred             -hh--cccccCCCCeeEEEecCCC
Q 012352          431 -LA--DLENFNPEDGMILANTTSI  451 (465)
Q Consensus       431 -~~--~l~~~~~~~~DilInaT~~  451 (465)
                       ++  ++.+ .+.++|+||+||+-
T Consensus       109 ~~~~~~~~~-~~~~~DvVi~~~d~  131 (249)
T 1jw9_B          109 LLDDAELAA-LIAEHDLVLDCTDN  131 (249)
T ss_dssp             CCCHHHHHH-HHHTSSEEEECCSS
T ss_pred             cCCHhHHHH-HHhCCCEEEEeCCC
Confidence             11  1222 24568999999863

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=97.64  E-value=8.8e-05  Score=74.56  Aligned_cols=77  Identities=35%  Similarity=0.415  Sum_probs=54.8

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHH-------HHHHHHHH---CCcc----cchhc---cccc-
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDR-------ARELAETV---GGHA----LSLAD---LENF-  437 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~-------a~~la~~~---~~~~----~~~~~---l~~~-  437 (465)
                      ..+++|++||+|+ ||+|++++..|++.|++|++++|+.++       .+++++++   +...    .|+.+   +.++ 
T Consensus        41 ~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~  120 (346)
T 3kvo_A           41 GRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAV  120 (346)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHH
T ss_pred             CCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHH
Confidence            5688999999998 599999999999999999999998764       33344433   3321    23221   1110 


Q ss_pred             -----CCCCeeEEEecCCCCC
Q 012352          438 -----NPEDGMILANTTSIGM  453 (465)
Q Consensus       438 -----~~~~~DilInaT~~gm  453 (465)
                           ..+..|+|||++++..
T Consensus       121 ~~~~~~~g~iDilVnnAG~~~  141 (346)
T 3kvo_A          121 EKAIKKFGGIDILVNNASAIS  141 (346)
T ss_dssp             HHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHcCCCCEEEECCCCCC
Confidence                 2357999999998764

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=97.64  E-value=4.8e-05  Score=72.39  Aligned_cols=76  Identities=26%  Similarity=0.373  Sum_probs=55.8

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEEC-CHHHHHHHHHHHC---Ccc----cchhc---cccc------CC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYDRARELAETVG---GHA----LSLAD---LENF------NP  439 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R-~~~~a~~la~~~~---~~~----~~~~~---l~~~------~~  439 (465)
                      ++++|+++|+|+ ||+|++++..|++.|++|+++.| +.++.+++.+++.   ...    .|+.+   +.+.      ..
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (261)
T 1gee_A            4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF   83 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            467899999988 59999999999999999999999 8888887776652   211    12221   1110      23


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +..|+|||+++...
T Consensus        84 g~id~li~~Ag~~~   97 (261)
T 1gee_A           84 GKLDVMINNAGLEN   97 (261)
T ss_dssp             SCCCEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            47899999998753

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=97.64  E-value=5.7e-05  Score=75.22  Aligned_cols=46  Identities=28%  Similarity=0.369  Sum_probs=41.2

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEE-CCHHHHHHHHHHH
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIAN-RTYDRARELAETV  424 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~-R~~~~a~~la~~~  424 (465)
                      +++|++||+|+ ||+|++++..|++.|++|+++. |+.++++++++++
T Consensus        44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l   91 (328)
T 2qhx_A           44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATL   91 (328)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence            67899999998 5999999999999999999999 9999988887765

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.64  E-value=0.00012  Score=63.24  Aligned_cols=69  Identities=22%  Similarity=0.279  Sum_probs=53.1

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCccc--ch---hcccccCCCCeeEEEecCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL--SL---ADLENFNPEDGMILANTTS  450 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~--~~---~~l~~~~~~~~DilInaT~  450 (465)
                      .++++|+|+|.+|++++..|.+.|++|++++|++++.+.+.+. +...+  +.   +.+.+....++|++|.++|
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~-~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~   79 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE-GFDAVIADPTDESFYRSLDLEGVSAVLITGS   79 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT-TCEEEECCTTCHHHHHHSCCTTCSEEEECCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC-CCcEEECCCCCHHHHHhCCcccCCEEEEecC
Confidence            4689999999999999999999999999999999998887653 32211  22   2233323567999999988

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=97.64  E-value=7.5e-05  Score=72.26  Aligned_cols=76  Identities=39%  Similarity=0.531  Sum_probs=54.0

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---cccc-----CCC
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---LENF-----NPE  440 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l~~~-----~~~  440 (465)
                      .++++|++||+|++ |+|++++..|++.|++|++++|+ ++.+++++++.   ...    .|+.+   +.++     ..+
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g  105 (273)
T 3uf0_A           27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATR  105 (273)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-THHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH-HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcC
Confidence            46789999999985 99999999999999999999987 44555655552   111    12221   1110     125


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+|||++++..
T Consensus       106 ~iD~lv~nAg~~~  118 (273)
T 3uf0_A          106 RVDVLVNNAGIIA  118 (273)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CCcEEEECCCCCC
Confidence            7899999998754

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=97.63  E-value=5.6e-05  Score=72.94  Aligned_cols=76  Identities=28%  Similarity=0.330  Sum_probs=53.3

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEE-ECCHHHHHHHHHHHC---Ccc----cchhc---cccc------CC
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA-NRTYDRARELAETVG---GHA----LSLAD---LENF------NP  439 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~-~R~~~~a~~la~~~~---~~~----~~~~~---l~~~------~~  439 (465)
                      .+++|++||+|++ |+|++++..|++.|++|++. .|+.++++++++++.   ...    .|+.+   +.++      ..
T Consensus        24 ~~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  103 (267)
T 3u5t_A           24 METNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAF  103 (267)
T ss_dssp             ---CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            3568999999985 99999999999999998887 677777777776652   221    13221   1110      23


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +..|+|||++++..
T Consensus       104 g~iD~lvnnAG~~~  117 (267)
T 3u5t_A          104 GGVDVLVNNAGIMP  117 (267)
T ss_dssp             SCEEEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            57999999998763

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=97.63  E-value=8.1e-05  Score=69.67  Aligned_cols=74  Identities=26%  Similarity=0.291  Sum_probs=55.1

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-cc--cchhc---cccc------CCCCeeEEE
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-HA--LSLAD---LENF------NPEDGMILA  446 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-~~--~~~~~---l~~~------~~~~~DilI  446 (465)
                      .+|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++.. ..  .++.+   +.+.      ..+..|+||
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li   83 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSALV   83 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            3678999988 5999999999999999999999999998888876642 11  12211   1110      234789999


Q ss_pred             ecCCCCC
Q 012352          447 NTTSIGM  453 (465)
Q Consensus       447 naT~~gm  453 (465)
                      |+++.+.
T Consensus        84 ~~Ag~~~   90 (234)
T 2ehd_A           84 NNAGVGV   90 (234)
T ss_dssp             ECCCCCC
T ss_pred             ECCCcCC
Confidence            9998753

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=97.62  E-value=0.00011  Score=70.11  Aligned_cols=47  Identities=30%  Similarity=0.444  Sum_probs=42.4

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHH---CCCeEEEEECCHHHHHHHHHHH
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKA---KGARVVIANRTYDRARELAETV  424 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~---~G~~v~i~~R~~~~a~~la~~~  424 (465)
                      .+++|+++|+|++ |+|++++..|++   .|++|++++|+.++.+++++++
T Consensus         3 ~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l   53 (259)
T 1oaa_A            3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEEL   53 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHH
Confidence            4678999999985 999999999999   8999999999999988887766

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=97.62  E-value=9.2e-05  Score=70.21  Aligned_cols=74  Identities=22%  Similarity=0.306  Sum_probs=53.4

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEEC-CHHHHHHHHHHHC---Ccc----cchhc---cccc------CCCC
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYDRARELAETVG---GHA----LSLAD---LENF------NPED  441 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R-~~~~a~~la~~~~---~~~----~~~~~---l~~~------~~~~  441 (465)
                      .+|++||+|+ ||+|++++..|++.|++|++..| +.++++++.+++.   ...    .|+.+   +.+.      ..+.
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   82 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGS   82 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4789999998 59999999999999999988766 6788888777653   221    12221   1110      2357


Q ss_pred             eeEEEecCCCCC
Q 012352          442 GMILANTTSIGM  453 (465)
Q Consensus       442 ~DilInaT~~gm  453 (465)
                      .|+|||+++...
T Consensus        83 id~lv~nAg~~~   94 (246)
T 3osu_A           83 LDVLVNNAGITR   94 (246)
T ss_dssp             CCEEEECCCCCC
T ss_pred             CCEEEECCCCCC
Confidence            899999998764

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=97.62  E-value=4.9e-05  Score=72.34  Aligned_cols=47  Identities=28%  Similarity=0.380  Sum_probs=41.8

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV  424 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~  424 (465)
                      .+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++
T Consensus         4 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~   51 (264)
T 2pd6_A            4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLL   51 (264)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHH
Confidence            467899999998 59999999999999999999999999888876654

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=97.61  E-value=9.1e-05  Score=70.89  Aligned_cols=75  Identities=27%  Similarity=0.354  Sum_probs=53.5

Q ss_pred             ccCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEECCHH---HHHHHHHHHCC-cc--cchhc---cccc------CC
Q 012352          378 ALAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTYD---RARELAETVGG-HA--LSLAD---LENF------NP  439 (465)
Q Consensus       378 ~l~~k~vlV~Ga---Gg~g~ai~~~L~~~G~~v~i~~R~~~---~a~~la~~~~~-~~--~~~~~---l~~~------~~  439 (465)
                      .+++|+++|+|+   ||+|++++..|++.|++|++++|+.+   ..+++.+.++. ..  .|+.+   +.+.      ..
T Consensus         5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (261)
T 2wyu_A            5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAF   84 (261)
T ss_dssp             CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHc
Confidence            467899999997   59999999999999999999999875   44455544432 11  12221   1110      23


Q ss_pred             CCeeEEEecCCCC
Q 012352          440 EDGMILANTTSIG  452 (465)
Q Consensus       440 ~~~DilInaT~~g  452 (465)
                      +..|+|||+++..
T Consensus        85 g~iD~lv~~Ag~~   97 (261)
T 2wyu_A           85 GGLDYLVHAIAFA   97 (261)
T ss_dssp             SSEEEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            5789999999875

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=97.61  E-value=3.6e-05  Score=73.51  Aligned_cols=73  Identities=22%  Similarity=0.289  Sum_probs=48.6

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchhc---cccc-----CCCCee
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLAD---LENF-----NPEDGM  443 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~~-----~~~~~D  443 (465)
                      .++++|++||+|+ ||+|++++..|++.|++|++++|+.++   +.++++...    .|+.+   +...     ..+..|
T Consensus         5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~id   81 (257)
T 3tl3_A            5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGED---VVADLGDRARFAAADVTDEAAVASALDLAETMGTLR   81 (257)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHH---HHHHTCTTEEEEECCTTCHHHHHHHHHHHHHHSCEE
T ss_pred             ceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHH---HHHhcCCceEEEECCCCCHHHHHHHHHHHHHhCCCC
Confidence            5678999999998 499999999999999999999996543   344444321    22221   1110     135799


Q ss_pred             EEEecCCCC
Q 012352          444 ILANTTSIG  452 (465)
Q Consensus       444 ilInaT~~g  452 (465)
                      +|||+++++
T Consensus        82 ~lv~nAg~~   90 (257)
T 3tl3_A           82 IVVNCAGTG   90 (257)
T ss_dssp             EEEECGGGS
T ss_pred             EEEECCCCC
Confidence            999999875

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.61  E-value=4.1e-05  Score=65.62  Aligned_cols=73  Identities=18%  Similarity=0.246  Sum_probs=52.1

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCccc--ch---hcccccCCCCeeEEEecCCCC
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL--SL---ADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~--~~---~~l~~~~~~~~DilInaT~~g  452 (465)
                      +.+++++|+|+|++|+.++..|.+.|++|++++|++++.+.+.+. +...+  +.   +.+.+....++|+||++++..
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~-~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   81 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY-ATHAVIANATEENELLSLGIRNFEYVIVAIGAN   81 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTT-CSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred             CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh-CCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence            346789999999999999999999999999999998887665432 22111  21   222221245789999999853

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=97.61  E-value=0.00011  Score=70.36  Aligned_cols=76  Identities=26%  Similarity=0.284  Sum_probs=53.6

Q ss_pred             cccCCcEEEEEccc---hhHHHHHHHHHHCCCeEEEEECCHH-----HHHHHHHHHCCcc----cchhc---c-------
Q 012352          377 SALAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYD-----RARELAETVGGHA----LSLAD---L-------  434 (465)
Q Consensus       377 ~~l~~k~vlV~GaG---g~g~ai~~~L~~~G~~v~i~~R~~~-----~a~~la~~~~~~~----~~~~~---l-------  434 (465)
                      .++++|+++|+|++   |+|++++..|++.|++|+++.|+.+     ..+++.+..+...    .|+.+   +       
T Consensus        16 ~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~   95 (267)
T 3gdg_A           16 LSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDV   95 (267)
T ss_dssp             HCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHH
T ss_pred             cCcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHH
Confidence            35789999999975   9999999999999999999988743     3334444444321    22221   1       


Q ss_pred             cccCCCCeeEEEecCCCCC
Q 012352          435 ENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       435 ~~~~~~~~DilInaT~~gm  453 (465)
                      .+ ..+..|+|||++++..
T Consensus        96 ~~-~~g~id~li~nAg~~~  113 (267)
T 3gdg_A           96 VA-DFGQIDAFIANAGATA  113 (267)
T ss_dssp             HH-HTSCCSEEEECCCCCC
T ss_pred             HH-HcCCCCEEEECCCcCC
Confidence            11 3467899999998764

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=97.60  E-value=6.4e-05  Score=72.43  Aligned_cols=77  Identities=22%  Similarity=0.323  Sum_probs=55.3

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEE-CCHHHHHHHHHHHC---Ccc----cchhc---cccc------C
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIAN-RTYDRARELAETVG---GHA----LSLAD---LENF------N  438 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~-R~~~~a~~la~~~~---~~~----~~~~~---l~~~------~  438 (465)
                      ..+++|++||+|++ |+|++++..|++.|++|+++. |+.++.+++++++.   ...    .|+.+   +.++      .
T Consensus        14 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   93 (270)
T 3is3_A           14 GRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAH   93 (270)
T ss_dssp             TCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45789999999985 999999999999999998865 46677777766652   221    12221   1110      2


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|+|||++++..
T Consensus        94 ~g~id~lvnnAg~~~  108 (270)
T 3is3_A           94 FGHLDIAVSNSGVVS  108 (270)
T ss_dssp             HSCCCEEECCCCCCC
T ss_pred             cCCCCEEEECCCCCC
Confidence            357899999998764

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=97.60  E-value=0.00022  Score=70.04  Aligned_cols=74  Identities=18%  Similarity=0.177  Sum_probs=55.7

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH----CCc-----ccchhc---ccccCCCCeeE
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV----GGH-----ALSLAD---LENFNPEDGMI  444 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~----~~~-----~~~~~~---l~~~~~~~~Di  444 (465)
                      .+++++|||+|+ |++|++++..|.+.|++|+++.|+.++.+.+.+.+    +..     ..++.+   +.+ .+.++|+
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~d~   86 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDE-VIKGAAG   86 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTT-TTTTCSE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHH-HHcCCCE
Confidence            357899999998 79999999999999999999999998877766543    111     123322   223 3457899


Q ss_pred             EEecCCCC
Q 012352          445 LANTTSIG  452 (465)
Q Consensus       445 lInaT~~g  452 (465)
                      |||+++..
T Consensus        87 vih~A~~~   94 (342)
T 1y1p_A           87 VAHIASVV   94 (342)
T ss_dssp             EEECCCCC
T ss_pred             EEEeCCCC
Confidence            99998765

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=97.59  E-value=3.8e-05  Score=78.93  Aligned_cols=70  Identities=21%  Similarity=0.309  Sum_probs=53.6

Q ss_pred             cEEEEEccchhHHHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHCC------cc--cch---hcccccCCC--CeeEE
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKG---ARVVIANRTYDRARELAETVGG------HA--LSL---ADLENFNPE--DGMIL  445 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G---~~v~i~~R~~~~a~~la~~~~~------~~--~~~---~~l~~~~~~--~~Dil  445 (465)
                      ++|+|+|+|++|++++..|++.|   .+|++++|+.+++++++++++.      ..  .++   +++.+ .+.  ++|+|
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~-~l~~~~~DvV   80 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVA-LINEVKPQIV   80 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHH-HHHHHCCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHH-HHHhhCCCEE
Confidence            47999999999999999999998   3899999999999999988742      11  222   22222 122  37999


Q ss_pred             EecCCCC
Q 012352          446 ANTTSIG  452 (465)
Q Consensus       446 InaT~~g  452 (465)
                      ||++|..
T Consensus        81 in~ag~~   87 (405)
T 4ina_A           81 LNIALPY   87 (405)
T ss_dssp             EECSCGG
T ss_pred             EECCCcc
Confidence            9999854

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=97.58  E-value=6.7e-05  Score=71.60  Aligned_cols=72  Identities=19%  Similarity=0.227  Sum_probs=54.8

Q ss_pred             CcEEEEEccc-hhHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHCCcc----cchhc---cccc------CCCCeeE
Q 012352          381 GKLFVVIGAG-GAGKALAYGAKAKG--ARVVIANRTYDRARELAETVGGHA----LSLAD---LENF------NPEDGMI  444 (465)
Q Consensus       381 ~k~vlV~GaG-g~g~ai~~~L~~~G--~~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~Di  444 (465)
                      +|+++|+|++ |+|++++..|++.|  ++|++++|+.++.+++.++++...    .|+.+   +.++      ..+..|+
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   81 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKIDS   81 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhcCCccE
Confidence            5899999985 99999999999986  589999999999999988876432    23221   1110      2357899


Q ss_pred             EEecCCCC
Q 012352          445 LANTTSIG  452 (465)
Q Consensus       445 lInaT~~g  452 (465)
                      |||++++.
T Consensus        82 lvnnAg~~   89 (254)
T 3kzv_A           82 LVANAGVL   89 (254)
T ss_dssp             EEEECCCC
T ss_pred             EEECCccc
Confidence            99999874

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=97.58  E-value=0.00011  Score=71.20  Aligned_cols=75  Identities=21%  Similarity=0.278  Sum_probs=53.4

Q ss_pred             cCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEECCHH---HHHHHHHHHCC-cc--cchhc---cccc------CCC
Q 012352          379 LAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTYD---RARELAETVGG-HA--LSLAD---LENF------NPE  440 (465)
Q Consensus       379 l~~k~vlV~Ga---Gg~g~ai~~~L~~~G~~v~i~~R~~~---~a~~la~~~~~-~~--~~~~~---l~~~------~~~  440 (465)
                      +++|++||+|+   ||+|++++..|++.|++|++++|+.+   ..+++.+..+. ..  .|+.+   +.+.      ..+
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   98 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWG   98 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            67899999998   59999999999999999999999875   44445444332 11  23221   1110      246


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+|||++++..
T Consensus        99 ~iD~lv~~Ag~~~  111 (285)
T 2p91_A           99 SLDIIVHSIAYAP  111 (285)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CCCEEEECCCCCC
Confidence            7899999998753

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=97.58  E-value=9.3e-05  Score=70.35  Aligned_cols=77  Identities=21%  Similarity=0.288  Sum_probs=53.7

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH----HCCcc----cchhc---cccc------C
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAET----VGGHA----LSLAD---LENF------N  438 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~----~~~~~----~~~~~---l~~~------~  438 (465)
                      ..+++|+++|+|+ ||+|++++..|++.|++|++++|+.++..+..++    .+...    .|+.+   +.+.      .
T Consensus        10 ~~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   89 (265)
T 1h5q_A           10 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDAD   89 (265)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHh
Confidence            4578899999998 5999999999999999999999975554443333    33321    12221   1110      2


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|+|||+++...
T Consensus        90 ~~~id~li~~Ag~~~  104 (265)
T 1h5q_A           90 LGPISGLIANAGVSV  104 (265)
T ss_dssp             SCSEEEEEECCCCCC
T ss_pred             cCCCCEEEECCCcCC
Confidence            467999999998753

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=97.58  E-value=0.00014  Score=68.45  Aligned_cols=73  Identities=18%  Similarity=0.297  Sum_probs=54.7

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCC-------eEEEEECCHHHHHHHHHHHC---Ccc----cchhc---cccc-----
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGA-------RVVIANRTYDRARELAETVG---GHA----LSLAD---LENF-----  437 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~-------~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l~~~-----  437 (465)
                      +|+++|+|+ ||+|++++..|++.|+       +|++++|+.++.+++.+++.   ...    .++.+   +.+.     
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   81 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV   81 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHH
Confidence            578999998 5999999999999999       99999999999888877762   211    12221   1110     


Q ss_pred             -CCCCeeEEEecCCCCC
Q 012352          438 -NPEDGMILANTTSIGM  453 (465)
Q Consensus       438 -~~~~~DilInaT~~gm  453 (465)
                       ..+..|+|||+++...
T Consensus        82 ~~~g~id~li~~Ag~~~   98 (244)
T 2bd0_A           82 ERYGHIDCLVNNAGVGR   98 (244)
T ss_dssp             HHTSCCSEEEECCCCCC
T ss_pred             HhCCCCCEEEEcCCcCC
Confidence             2357899999998753

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=97.58  E-value=0.00011  Score=71.53  Aligned_cols=141  Identities=18%  Similarity=0.238  Sum_probs=85.3

Q ss_pred             eeecCC-CccccccHHHHHHHHHHcCCCeeEeccc--c--ccHHHHHHHh-hcCCCCeeEeccCch-----HHHhhhccc
Q 012352          256 FGIIGK-PVGHSKSPILYNEAFKSVGFNGVFVHLL--V--DDIAKFFQTY-SSNDFAGFSCTIPHK-----EAAVKCCDE  324 (465)
Q Consensus       256 ~~~iG~-pi~hS~SP~~hn~~f~~~gl~~~y~~~~--~--~~l~~~~~~l-~~~~~~G~~vT~P~K-----~~v~~~~d~  324 (465)
                      .-++|+ |-+++.- ..-.+..++.|+......+.  +  +++.+.++.+ .++.+.|+.|..|.-     ..++..+  
T Consensus        38 vilvG~dpaS~~Yv-~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~id~~~i~~~I--  114 (288)
T 1b0a_A           38 VVLVGSNPASQIYV-ASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERI--  114 (288)
T ss_dssp             EEEESCCHHHHHHH-HHHHHHHHHHTCEECCEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHTTS--
T ss_pred             EEEeCCChhHHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcc--
Confidence            345564 3333322 22356789999987654443  2  3677777777 578999999999953     2222222  


Q ss_pred             cCHHHHhccceeeEEEeccCCeEE-EE----eccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccch-hHHHHHH
Q 012352          325 VDTVAKSIGAVNCIIRRQSDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAY  398 (465)
Q Consensus       325 ~~~~A~~~gavNtv~~~~~~g~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg-~g~ai~~  398 (465)
                       ++. +.+...+.+-    -|+++ |.    -..-.|++..|++.           +.++.+|+|+|+|.|+ .|+.++.
T Consensus       115 -~p~-KDVDG~~p~n----~g~l~~g~~~~~PcTp~gi~~ll~~~-----------~i~l~gk~vvVIG~s~iVG~p~A~  177 (288)
T 1b0a_A          115 -HPD-KDVDGFHPYN----VGRLCQRAPRLRPCTPRGIVTLLERY-----------NIDTFGLNAVVIGASNIVGRPMSM  177 (288)
T ss_dssp             -CTT-TCTTCCSHHH----HHHHHTTCCSSCCHHHHHHHHHHHHT-----------TCCCTTCEEEEECCCTTTHHHHHH
T ss_pred             -CCc-cCcccCCccc----hhHHhCCCCCCCCCcHHHHHHHHHHc-----------CCCCCCCEEEEECCChHHHHHHHH
Confidence             110 1111111100    01110 00    01245777777763           2578999999999997 5999999


Q ss_pred             HHHHCCCeEEEEECCHHH
Q 012352          399 GAKAKGARVVIANRTYDR  416 (465)
Q Consensus       399 ~L~~~G~~v~i~~R~~~~  416 (465)
                      .|...|++|+++.++...
T Consensus       178 lL~~~gAtVtv~hs~t~~  195 (288)
T 1b0a_A          178 ELLLAGCTTTVTHRFTKN  195 (288)
T ss_dssp             HHHTTTCEEEEECSSCSC
T ss_pred             HHHHCCCeEEEEeCCchh
Confidence            999999999999876543

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=97.57  E-value=0.00016  Score=70.68  Aligned_cols=75  Identities=21%  Similarity=0.277  Sum_probs=52.8

Q ss_pred             ccCCcEEEEEccc-h--hHHHHHHHHHHCCCeEEEEECCHHHH---HHHHHHHCCc-c--cchhc---cccc------CC
Q 012352          378 ALAGKLFVVIGAG-G--AGKALAYGAKAKGARVVIANRTYDRA---RELAETVGGH-A--LSLAD---LENF------NP  439 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g--~g~ai~~~L~~~G~~v~i~~R~~~~a---~~la~~~~~~-~--~~~~~---l~~~------~~  439 (465)
                      .+++|++||+|++ +  +|++++..|++.|++|++++|+.+..   +++.+..+.. .  .|+.+   +.++      ..
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  107 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKW  107 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhc
Confidence            4789999999984 4  99999999999999999999996433   3344444421 1  22221   1110      34


Q ss_pred             CCeeEEEecCCCC
Q 012352          440 EDGMILANTTSIG  452 (465)
Q Consensus       440 ~~~DilInaT~~g  452 (465)
                      +..|+|||++++.
T Consensus       108 g~iD~lVnnAG~~  120 (293)
T 3grk_A          108 GKLDFLVHAIGFS  120 (293)
T ss_dssp             SCCSEEEECCCCC
T ss_pred             CCCCEEEECCccC
Confidence            6799999999876

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=97.57  E-value=9.1e-05  Score=72.29  Aligned_cols=77  Identities=25%  Similarity=0.326  Sum_probs=53.4

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHH-HHHHHHH---CCcc----cchhc---cccc------C
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRA-RELAETV---GGHA----LSLAD---LENF------N  438 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a-~~la~~~---~~~~----~~~~~---l~~~------~  438 (465)
                      ..+++|++||+|+ ||+|++++..|++.|++|++++|+.++. +.+.+.+   +...    .|+.+   +.++      .
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            4578999999998 4999999999999999999999987643 3333333   2221    13221   1110      2


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|+|||+++...
T Consensus       123 ~g~iD~lvnnAg~~~  137 (291)
T 3ijr_A          123 LGSLNILVNNVAQQY  137 (291)
T ss_dssp             HSSCCEEEECCCCCC
T ss_pred             cCCCCEEEECCCCcC
Confidence            457899999998653

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=97.57  E-value=4.3e-05  Score=72.31  Aligned_cols=74  Identities=27%  Similarity=0.298  Sum_probs=54.6

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECC-HHHHHHHHHHH---CCcc----cchhc---cccc------CC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT-YDRARELAETV---GGHA----LSLAD---LENF------NP  439 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~-~~~a~~la~~~---~~~~----~~~~~---l~~~------~~  439 (465)
                      ++++|+++|+|+ ||+|++++..|++.|++|++++|+ .++.+++.+++   +...    .|+.+   +.+.      ..
T Consensus         4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (258)
T 3afn_B            4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKF   83 (258)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            467899999988 599999999999999999999998 77777776665   2221    12221   1110      23


Q ss_pred             CCeeEEEecCCC
Q 012352          440 EDGMILANTTSI  451 (465)
Q Consensus       440 ~~~DilInaT~~  451 (465)
                      +..|+|||+++.
T Consensus        84 g~id~vi~~Ag~   95 (258)
T 3afn_B           84 GGIDVLINNAGG   95 (258)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            478999999986

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=97.57  E-value=8.6e-05  Score=70.66  Aligned_cols=74  Identities=20%  Similarity=0.286  Sum_probs=55.1

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHH-CCCeEEEEECCHHHHHHHHHHH---CCcc----cchhc---cccc------CCCC
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKA-KGARVVIANRTYDRARELAETV---GGHA----LSLAD---LENF------NPED  441 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~-~G~~v~i~~R~~~~a~~la~~~---~~~~----~~~~~---l~~~------~~~~  441 (465)
                      ++|+++|+|+ ||+|++++..|++ .|++|+++.|+.++.+++.+++   +...    .++.+   +.++      ..+.
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   82 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG   82 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            4789999988 5999999999999 9999999999999888877765   2211    23222   1110      2347


Q ss_pred             eeEEEecCCCCC
Q 012352          442 GMILANTTSIGM  453 (465)
Q Consensus       442 ~DilInaT~~gm  453 (465)
                      .|+|||+++...
T Consensus        83 id~li~~Ag~~~   94 (276)
T 1wma_A           83 LDVLVNNAGIAF   94 (276)
T ss_dssp             EEEEEECCCCCC
T ss_pred             CCEEEECCcccc
Confidence            999999998764

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=97.56  E-value=7.3e-05  Score=80.80  Aligned_cols=75  Identities=23%  Similarity=0.305  Sum_probs=54.3

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCH---------HHHHHHHHHHC---Ccc-cchhcc---------
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTY---------DRARELAETVG---GHA-LSLADL---------  434 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~---------~~a~~la~~~~---~~~-~~~~~l---------  434 (465)
                      .+++|.++|+|+| |+|++++..|++.|++|++.+|+.         ++++++++++.   ... .+..+.         
T Consensus         5 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~~v~~   84 (604)
T 2et6_A            5 DFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDKIVET   84 (604)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHH
Confidence            4678999999997 999999999999999999998765         66677766652   221 122111         


Q ss_pred             -cccCCCCeeEEEecCCCCC
Q 012352          435 -ENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       435 -~~~~~~~~DilInaT~~gm  453 (465)
                       .+ ..+..|+|||++++..
T Consensus        85 ~~~-~~G~iDiLVnNAGi~~  103 (604)
T 2et6_A           85 AVK-NFGTVHVIINNAGILR  103 (604)
T ss_dssp             HHH-HHSCCCEEEECCCCCC
T ss_pred             HHH-HcCCCCEEEECCCCCC
Confidence             11 3467999999999764

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=97.56  E-value=7.1e-05  Score=71.54  Aligned_cols=77  Identities=21%  Similarity=0.356  Sum_probs=56.6

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEEC-CHHHHHHHHHHH---CCcc----cchhc---cccc------C
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYDRARELAETV---GGHA----LSLAD---LENF------N  438 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R-~~~~a~~la~~~---~~~~----~~~~~---l~~~------~  438 (465)
                      ..+++|+++|+|+ ||+|++++..|++.|++|+++.| +.++.+++.+++   +...    .|+.+   +.+.      .
T Consensus        17 ~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   96 (274)
T 1ja9_A           17 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH   96 (274)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            4578899999998 59999999999999999999999 888887776655   2221    12221   1110      2


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|+|||+++...
T Consensus        97 ~~~~d~vi~~Ag~~~  111 (274)
T 1ja9_A           97 FGGLDFVMSNSGMEV  111 (274)
T ss_dssp             HSCEEEEECCCCCCC
T ss_pred             cCCCCEEEECCCCCC
Confidence            347899999998753

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=97.56  E-value=3.2e-06  Score=87.69  Aligned_cols=104  Identities=19%  Similarity=0.196  Sum_probs=69.1

Q ss_pred             HHHhccceeeEEEeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCC-e
Q 012352          328 VAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-R  406 (465)
Q Consensus       328 ~A~~~gavNtv~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~  406 (465)
                      .....|++|||+.+  +|++.|     .||...++..           ...+.+.+|+|+|+||+|..++..|+..|+ +
T Consensus         5 ~~~r~~~vntl~~~--~g~~~g-----~gf~~g~e~~-----------~~~L~~~~VlvvG~GGlGs~va~~La~aGvg~   66 (434)
T 1tt5_B            5 WEGRWNHVKKFLER--SGPFTH-----PDFEPSTESL-----------QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQ   66 (434)
T ss_dssp             CTTTTHHHHHHHHS--CCSSCC-----TTCCCCSSHH-----------HHHHHTCCEEEECSSTHHHHHHHHHHHTTCCC
T ss_pred             hhhhhccceEEEcC--CCcccc-----cccccCHHHH-----------HHHhcCCEEEEECcCHHHHHHHHHHHHcCCCE
Confidence            34578999999987  888876     4443332211           012356899999999999999999999999 9


Q ss_pred             EEEEE----------CCH---------HHHHHHHHHH---CCc--cc----chhcc-cccCCCCeeEEEecCC
Q 012352          407 VVIAN----------RTY---------DRARELAETV---GGH--AL----SLADL-ENFNPEDGMILANTTS  450 (465)
Q Consensus       407 v~i~~----------R~~---------~~a~~la~~~---~~~--~~----~~~~l-~~~~~~~~DilInaT~  450 (465)
                      ++|++          |..         .|++.+++.+   +..  ..    .+.+. .+ .+.++|+||+|+-
T Consensus        67 i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~~~~-~~~~~DlVi~~~D  138 (434)
T 1tt5_B           67 IHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDT-FYRQFHIIVCGLD  138 (434)
T ss_dssp             EEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEESCGGGBCHH-HHTTCSEEEECCS
T ss_pred             EEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCCCEEEEEecccchhhHH-HhcCCCEEEECCC
Confidence            99994          442         4666666654   321  11    11111 11 2457899999963

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.56  E-value=6.7e-05  Score=69.62  Aligned_cols=69  Identities=13%  Similarity=0.106  Sum_probs=50.8

Q ss_pred             cEEEEEcc-chhHHHHHHHHH-HCCCeEEEEECCHH-HHHHHHHHHCC-cc--cchh---cccccCCCCeeEEEecCCC
Q 012352          382 KLFVVIGA-GGAGKALAYGAK-AKGARVVIANRTYD-RARELAETVGG-HA--LSLA---DLENFNPEDGMILANTTSI  451 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~-~~G~~v~i~~R~~~-~a~~la~~~~~-~~--~~~~---~l~~~~~~~~DilInaT~~  451 (465)
                      |+++|+|+ |++|++++..|+ +.|++|+++.|+++ ++++++..... ..  .++.   ++.+ .+.++|+|||+++.
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~d~vv~~ag~   83 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQ-AVTNAEVVFVGAME   83 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHH-HHTTCSEEEESCCC
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHH-HHcCCCEEEEcCCC
Confidence            67999997 799999999999 89999999999998 87776522111 11  2332   2333 34578999999875

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=97.56  E-value=9.2e-05  Score=70.02  Aligned_cols=74  Identities=23%  Similarity=0.243  Sum_probs=49.0

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchhcc------cc--cCCCCeeEEEe
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLADL------EN--FNPEDGMILAN  447 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~~l------~~--~~~~~~DilIn  447 (465)
                      +++|++||+|+ ||+|++++..|++ |++|++++|+.++.+++++..+...  .++.+.      .+  ...+..|+|||
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~lv~   81 (245)
T 3e9n_A            3 LKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAEIEGVEPIESDIVKEVLEEGGVDKLKNLDHVDTLVH   81 (245)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHTSTTEEEEECCHHHHHHTSSSCGGGTTCSCCSEEEE
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHhhcCCcceecccchHHHHHHHHHHHHhcCCCCEEEE
Confidence            56899999998 4999999999987 8899999999999888775211111  122111      11  03457999999


Q ss_pred             cCCCCC
Q 012352          448 TTSIGM  453 (465)
Q Consensus       448 aT~~gm  453 (465)
                      +++...
T Consensus        82 ~Ag~~~   87 (245)
T 3e9n_A           82 AAAVAR   87 (245)
T ss_dssp             CC----
T ss_pred             CCCcCC
Confidence            998754

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=97.56  E-value=6e-05  Score=74.65  Aligned_cols=77  Identities=30%  Similarity=0.438  Sum_probs=56.6

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECC----------HHHHHHHHHHHC---Ccc----cchhc---cc
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT----------YDRARELAETVG---GHA----LSLAD---LE  435 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~----------~~~a~~la~~~~---~~~----~~~~~---l~  435 (465)
                      ..+++|++||+|++ |+|++++..|++.|++|++++|+          .++++++++++.   ...    .|+.+   +.
T Consensus        23 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~  102 (322)
T 3qlj_A           23 GVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAA  102 (322)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHH
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHH
Confidence            34789999999984 99999999999999999999998          677777776653   221    12221   11


Q ss_pred             cc------CCCCeeEEEecCCCCC
Q 012352          436 NF------NPEDGMILANTTSIGM  453 (465)
Q Consensus       436 ~~------~~~~~DilInaT~~gm  453 (465)
                      ++      ..+..|+|||++++..
T Consensus       103 ~~~~~~~~~~g~iD~lv~nAg~~~  126 (322)
T 3qlj_A          103 GLIQTAVETFGGLDVLVNNAGIVR  126 (322)
T ss_dssp             HHHHHHHHHHSCCCEEECCCCCCC
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCC
Confidence            10      2357899999998764

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=97.55  E-value=9.3e-05  Score=71.74  Aligned_cols=77  Identities=27%  Similarity=0.379  Sum_probs=56.2

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH---CC-cc----cchhc---cccc------C
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV---GG-HA----LSLAD---LENF------N  438 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~---~~-~~----~~~~~---l~~~------~  438 (465)
                      ..+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++   +. ..    .|+.+   +.+.      .
T Consensus        24 ~~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~  103 (286)
T 1xu9_A           24 EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKL  103 (286)
T ss_dssp             GGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             hhcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence            3477899999998 59999999999999999999999999988877654   22 11    22221   1110      2


Q ss_pred             CCCeeEEEec-CCCCC
Q 012352          439 PEDGMILANT-TSIGM  453 (465)
Q Consensus       439 ~~~~DilIna-T~~gm  453 (465)
                      .+..|+|||+ ++.+.
T Consensus       104 ~g~iD~li~naag~~~  119 (286)
T 1xu9_A          104 MGGLDMLILNHITNTS  119 (286)
T ss_dssp             HTSCSEEEECCCCCCC
T ss_pred             cCCCCEEEECCccCCC
Confidence            3578999999 56543

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=97.55  E-value=8.4e-05  Score=71.55  Aligned_cols=77  Identities=22%  Similarity=0.245  Sum_probs=55.4

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEEC-CHHHHHHHHHHHC---Ccc----cchhc---cccc------C
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYDRARELAETVG---GHA----LSLAD---LENF------N  438 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R-~~~~a~~la~~~~---~~~----~~~~~---l~~~------~  438 (465)
                      ..+++|+++|+|+ ||+|++++..|++.|++|+++.| +.+..+.+.+.+.   ...    .|+.+   +.++      .
T Consensus        25 m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  104 (271)
T 4iin_A           25 MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQS  104 (271)
T ss_dssp             CCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence            5688999999998 59999999999999999999999 5666666665542   221    12211   1110      2


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|+|||++++..
T Consensus       105 ~g~id~li~nAg~~~  119 (271)
T 4iin_A          105 DGGLSYLVNNAGVVR  119 (271)
T ss_dssp             HSSCCEEEECCCCCC
T ss_pred             cCCCCEEEECCCcCC
Confidence            357899999998764

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.55  E-value=0.00014  Score=69.27  Aligned_cols=73  Identities=25%  Similarity=0.272  Sum_probs=51.9

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-c-cchh-ccccc--CCCCeeEEEecCC
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-A-LSLA-DLENF--NPEDGMILANTTS  450 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~-~~~~-~l~~~--~~~~~DilInaT~  450 (465)
                      ..+++|+++|+|+ ||+|++++..|++.|++|++++|+.+..+++    +.. . .|+. ++..+  ...+.|+|||+++
T Consensus        15 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~iD~lv~~Ag   90 (249)
T 1o5i_A           15 LGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRS----GHRYVVCDLRKDLDLLFEKVKEVDILVLNAG   90 (249)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHT----CSEEEECCTTTCHHHHHHHSCCCSEEEECCC
T ss_pred             hccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHhh----CCeEEEeeHHHHHHHHHHHhcCCCEEEECCC
Confidence            5688999999998 5999999999999999999999998554433    311 1 2221 11110  2337899999998


Q ss_pred             CCC
Q 012352          451 IGM  453 (465)
Q Consensus       451 ~gm  453 (465)
                      ...
T Consensus        91 ~~~   93 (249)
T 1o5i_A           91 GPK   93 (249)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            653

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=97.53  E-value=0.00019  Score=68.48  Aligned_cols=76  Identities=20%  Similarity=0.230  Sum_probs=54.1

Q ss_pred             cccCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEECCHH---HHHHHHHHHCC-cc--cchhc---c-------ccc
Q 012352          377 SALAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTYD---RARELAETVGG-HA--LSLAD---L-------ENF  437 (465)
Q Consensus       377 ~~l~~k~vlV~Ga---Gg~g~ai~~~L~~~G~~v~i~~R~~~---~a~~la~~~~~-~~--~~~~~---l-------~~~  437 (465)
                      ..+++|++||+|+   ||+|++++..|++.|++|+++.|+..   ..+++.++.+. ..  .|+.+   +       .+ 
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~-   88 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKT-   88 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH-
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHH-
Confidence            4578999999996   59999999999999999999998843   34444444442 11  22221   1       11 


Q ss_pred             CCCCeeEEEecCCCCC
Q 012352          438 NPEDGMILANTTSIGM  453 (465)
Q Consensus       438 ~~~~~DilInaT~~gm  453 (465)
                      ..+..|+|||++++..
T Consensus        89 ~~g~id~lv~nAg~~~  104 (271)
T 3ek2_A           89 HWDSLDGLVHSIGFAP  104 (271)
T ss_dssp             HCSCEEEEEECCCCCC
T ss_pred             HcCCCCEEEECCccCc
Confidence            3467999999998754

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=97.52  E-value=0.00014  Score=71.15  Aligned_cols=77  Identities=25%  Similarity=0.268  Sum_probs=53.7

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECC--HHHHHHHHHHH---CCcc----cchhc---cccc------
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT--YDRARELAETV---GGHA----LSLAD---LENF------  437 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~--~~~a~~la~~~---~~~~----~~~~~---l~~~------  437 (465)
                      ..+++|++||+|++ |+|++++..|++.|++|+++.|+  .++.+++.+.+   +...    .|+.+   +.++      
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  124 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKARE  124 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            35789999999985 99999999999999999999886  34455554433   3221    12221   1110      


Q ss_pred             CCCCeeEEEecCCCCC
Q 012352          438 NPEDGMILANTTSIGM  453 (465)
Q Consensus       438 ~~~~~DilInaT~~gm  453 (465)
                      ..+..|+|||+++...
T Consensus       125 ~~g~iD~lv~nAg~~~  140 (294)
T 3r3s_A          125 ALGGLDILALVAGKQT  140 (294)
T ss_dssp             HHTCCCEEEECCCCCC
T ss_pred             HcCCCCEEEECCCCcC
Confidence            2457899999998753

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=97.52  E-value=5.3e-05  Score=75.22  Aligned_cols=70  Identities=17%  Similarity=0.177  Sum_probs=52.8

Q ss_pred             CCcEEEEEccchhHHHHHHHHHH-CCC-eEEEEECCHHHHHHHHHHH----CCcccchhcccccCCCCeeEEEecCCCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYDRARELAETV----GGHALSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~-~G~-~v~i~~R~~~~a~~la~~~----~~~~~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      ..++++|+|+|.+|+..+.+|.. .+. +|+|+||+  +++++++++    +...... ++.+ .+.++|+||+|||...
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g~~~~~~-~~~e-av~~aDIVi~aT~s~~  195 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCGVPARMA-APAD-IAAQADIVVTATRSTT  195 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHTSCEEEC-CHHH-HHHHCSEEEECCCCSS
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcCCeEEEe-CHHH-HHhhCCEEEEccCCCC
Confidence            36899999999999999999986 456 89999999  788887764    3222122 3333 3456899999999763

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=97.51  E-value=0.00022  Score=67.13  Aligned_cols=70  Identities=24%  Similarity=0.379  Sum_probs=50.4

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchhc--cccc------CCCCeeEEEecC
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLAD--LENF------NPEDGMILANTT  449 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~~--l~~~------~~~~~DilInaT  449 (465)
                      +|+++|+|+ ||+|++++..|++.|++|++++|+.++   +.++++...  .|+.+  +.+.      ..+..|+|||++
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~g~id~lv~~A   78 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE---AAQSLGAVPLPTDLEKDDPKGLVKRALEALGGLHVLVHAA   78 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHTCEEEECCTTTSCHHHHHHHHHHHHTSCCEEEECC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHhhCcEEEecCCchHHHHHHHHHHHHHcCCCCEEEECC
Confidence            578999998 599999999999999999999999876   334444221  23222  1110      235789999999


Q ss_pred             CCCC
Q 012352          450 SIGM  453 (465)
Q Consensus       450 ~~gm  453 (465)
                      +...
T Consensus        79 g~~~   82 (239)
T 2ekp_A           79 AVNV   82 (239)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8764

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=97.51  E-value=8.8e-05  Score=73.60  Aligned_cols=76  Identities=24%  Similarity=0.362  Sum_probs=55.9

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEE---------ECCHHHHHHHHHHHC---Cc-ccchhcc--------
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA---------NRTYDRARELAETVG---GH-ALSLADL--------  434 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~---------~R~~~~a~~la~~~~---~~-~~~~~~l--------  434 (465)
                      ..+++|+++|+|++ |+|++++..|++.|++|++.         .|+.++++++++++.   .. ..++.+.        
T Consensus         5 ~~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~~~~~~~~~~   84 (319)
T 1gz6_A            5 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVK   84 (319)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHH
Confidence            45788999999985 99999999999999999996         457788887777663   11 1222211        


Q ss_pred             --cccCCCCeeEEEecCCCCC
Q 012352          435 --ENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       435 --~~~~~~~~DilInaT~~gm  453 (465)
                        .+ ..+..|+|||++++..
T Consensus        85 ~~~~-~~g~iD~lVnnAG~~~  104 (319)
T 1gz6_A           85 TALD-TFGRIDVVVNNAGILR  104 (319)
T ss_dssp             HHHH-HTSCCCEEEECCCCCC
T ss_pred             HHHH-HcCCCCEEEECCCCCC
Confidence              11 2467899999998754

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.50  E-value=0.00013  Score=70.62  Aligned_cols=77  Identities=22%  Similarity=0.384  Sum_probs=53.9

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHH-HHHHHHHH---CCcc----cchhc---cccc------C
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDR-ARELAETV---GGHA----LSLAD---LENF------N  438 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~-a~~la~~~---~~~~----~~~~~---l~~~------~  438 (465)
                      ..+++|++||+|++ |+|++++..|++.|++|+++.|+.++ .+++.+++   +...    .++.+   +.+.      .
T Consensus        25 ~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  104 (283)
T 1g0o_A           25 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKI  104 (283)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45788999999984 99999999999999999999998654 45554443   3221    12211   1110      2


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|+|||++++..
T Consensus       105 ~g~iD~lv~~Ag~~~  119 (283)
T 1g0o_A          105 FGKLDIVCSNSGVVS  119 (283)
T ss_dssp             HSCCCEEEECCCCCC
T ss_pred             cCCCCEEEECCCcCC
Confidence            357899999998753

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=97.49  E-value=0.00024  Score=67.39  Aligned_cols=74  Identities=20%  Similarity=0.207  Sum_probs=51.8

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCe-EEEEECCH--HHHHHHHHHHCC-cc----cchhc----cccc------CC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGAR-VVIANRTY--DRARELAETVGG-HA----LSLAD----LENF------NP  439 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~-v~i~~R~~--~~a~~la~~~~~-~~----~~~~~----l~~~------~~  439 (465)
                      +++|+++|+|+ ||+|++++..|++.|++ |++++|+.  +..+++.+.... ..    .|+.+    +.+.      ..
T Consensus         3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (254)
T 1sby_A            3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhc
Confidence            56899999988 59999999999999995 99999986  455566554321 11    23222    1110      23


Q ss_pred             CCeeEEEecCCCC
Q 012352          440 EDGMILANTTSIG  452 (465)
Q Consensus       440 ~~~DilInaT~~g  452 (465)
                      ++.|+|||+++..
T Consensus        83 g~id~lv~~Ag~~   95 (254)
T 1sby_A           83 KTVDILINGAGIL   95 (254)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEEEECCccC
Confidence            4789999999863

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=97.49  E-value=0.0001  Score=75.10  Aligned_cols=49  Identities=24%  Similarity=0.325  Sum_probs=42.3

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc
Q 012352          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH  427 (465)
Q Consensus       378 ~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~  427 (465)
                      .+.+++|+|+|+|++|++++..+..+|++|++++|++++.+.+.+ ++..
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~-~Ga~  217 (384)
T 1l7d_A          169 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVES-LGGK  217 (384)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH-TTCE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCe
Confidence            456899999999999999999999999999999999888766544 6654

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=97.48  E-value=7.2e-05  Score=70.44  Aligned_cols=75  Identities=29%  Similarity=0.357  Sum_probs=51.2

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEE-ECCHHHHHHHHHHH---CCcc----cchhc---cccc------CCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIA-NRTYDRARELAETV---GGHA----LSLAD---LENF------NPE  440 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~-~R~~~~a~~la~~~---~~~~----~~~~~---l~~~------~~~  440 (465)
                      +++|+++|+|+ ||+|++++..|++.|++|+++ .|+.++.+++.+++   +...    .|+.+   +.+.      ..+
T Consensus         3 l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (247)
T 2hq1_A            3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFG   82 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            56789999998 599999999999999999998 77877777766654   2221    12221   1110      234


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+|||+++...
T Consensus        83 ~~d~vi~~Ag~~~   95 (247)
T 2hq1_A           83 RIDILVNNAGITR   95 (247)
T ss_dssp             CCCEEEECC----
T ss_pred             CCCEEEECCCCCC
Confidence            7899999998753

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=97.48  E-value=3.4e-05  Score=73.84  Aligned_cols=72  Identities=17%  Similarity=0.219  Sum_probs=49.4

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchh---cc-------cccCCCCeeEE
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA---DL-------ENFNPEDGMIL  445 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~---~l-------~~~~~~~~Dil  445 (465)
                      ..+.+|+++|+|+ ||+|++++..|++.|++|++++|+.++.++    ......|+.   ++       .+ ..+..|+|
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~----~~~~~~Dl~d~~~v~~~~~~~~~-~~g~iD~l   91 (253)
T 2nm0_A           17 RSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEG----FLAVKCDITDTEQVEQAYKEIEE-THGPVEVL   91 (253)
T ss_dssp             ---CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT----SEEEECCTTSHHHHHHHHHHHHH-HTCSCSEE
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhcc----ceEEEecCCCHHHHHHHHHHHHH-HcCCCCEE
Confidence            4577899999998 599999999999999999999998665332    100011221   11       11 34678999


Q ss_pred             EecCCCCC
Q 012352          446 ANTTSIGM  453 (465)
Q Consensus       446 InaT~~gm  453 (465)
                      ||++++..
T Consensus        92 v~nAg~~~   99 (253)
T 2nm0_A           92 IANAGVTK   99 (253)
T ss_dssp             EEECSCCT
T ss_pred             EECCCCCC
Confidence            99998754

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=97.48  E-value=0.00024  Score=70.97  Aligned_cols=75  Identities=16%  Similarity=0.219  Sum_probs=58.5

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHC-CC-eEEEEECCHHHHHHHHHHHCCc---c--cchh---cccccCCCCeeEE
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAK-GA-RVVIANRTYDRARELAETVGGH---A--LSLA---DLENFNPEDGMIL  445 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~-G~-~v~i~~R~~~~a~~la~~~~~~---~--~~~~---~l~~~~~~~~Dil  445 (465)
                      ..+++|+|||+|+ |++|++++..|.+. |+ +|++++|++.+...+.+.+...   .  .++.   .+.+ .+.++|+|
T Consensus        17 ~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~-~~~~~D~V   95 (344)
T 2gn4_A           17 NMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNY-ALEGVDIC   95 (344)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHH-HTTTCSEE
T ss_pred             HhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHH-HHhcCCEE
Confidence            3467899999997 79999999999999 98 9999999999988888777421   1  2332   2333 35678999


Q ss_pred             EecCCCC
Q 012352          446 ANTTSIG  452 (465)
Q Consensus       446 InaT~~g  452 (465)
                      ||+++..
T Consensus        96 ih~Aa~~  102 (344)
T 2gn4_A           96 IHAAALK  102 (344)
T ss_dssp             EECCCCC
T ss_pred             EECCCCC
Confidence            9999865

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=97.46  E-value=0.00017  Score=69.78  Aligned_cols=76  Identities=14%  Similarity=0.180  Sum_probs=55.5

Q ss_pred             cccCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEECCH--HHHHHHHHHHCCc-c--cchhc---c-------cccC
Q 012352          377 SALAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTY--DRARELAETVGGH-A--LSLAD---L-------ENFN  438 (465)
Q Consensus       377 ~~l~~k~vlV~Ga---Gg~g~ai~~~L~~~G~~v~i~~R~~--~~a~~la~~~~~~-~--~~~~~---l-------~~~~  438 (465)
                      ..+++|+++|+|+   +|+|++++..|++.|++|++++|+.  +..+++.++.+.. .  .|+.+   +       .+ .
T Consensus        22 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~-~  100 (280)
T 3nrc_A           22 GFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGK-V  100 (280)
T ss_dssp             CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHH-H
T ss_pred             cccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHH-H
Confidence            3577899999995   3699999999999999999999987  6666666655421 1  22211   1       11 3


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|+|||++++..
T Consensus       101 ~g~id~li~nAg~~~  115 (280)
T 3nrc_A          101 WDGLDAIVHSIAFAP  115 (280)
T ss_dssp             CSSCCEEEECCCCCC
T ss_pred             cCCCCEEEECCccCC
Confidence            467899999998753

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.45  E-value=9e-05  Score=70.59  Aligned_cols=73  Identities=27%  Similarity=0.321  Sum_probs=51.0

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH---CCcc----cchhc---cccc------CCCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHA----LSLAD---LENF------NPED  441 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~---~~~~----~~~~~---l~~~------~~~~  441 (465)
                      +++|+++|+|+ ||+|++++..|++.|++|++++|+.+  +++.+++   +...    .|+.+   +.+.      ..+.
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   79 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGG   79 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            46799999998 59999999999999999999999865  3333433   2211    12221   1110      2347


Q ss_pred             eeEEEecCCCCC
Q 012352          442 GMILANTTSIGM  453 (465)
Q Consensus       442 ~DilInaT~~gm  453 (465)
                      .|+|||+++...
T Consensus        80 id~lv~~Ag~~~   91 (255)
T 2q2v_A           80 VDILVNNAGIQH   91 (255)
T ss_dssp             CSEEEECCCCCC
T ss_pred             CCEEEECCCCCC
Confidence            899999998753

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.45  E-value=0.00016  Score=68.32  Aligned_cols=78  Identities=15%  Similarity=0.140  Sum_probs=55.2

Q ss_pred             CcccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHH-HHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          374 GVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYD-RARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       374 ~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~-~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      |.+.++++|+|||+|+|.+|...+..|.+.|++|+|++.+.. ..+++++..+..++. .......+.++|+||-||+..
T Consensus        24 Pifl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~-~~~~~~dL~~adLVIaAT~d~  102 (223)
T 3dfz_A           24 TVMLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKR-KKVGEEDLLNVFFIVVATNDQ  102 (223)
T ss_dssp             EEEECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEEC-SCCCGGGSSSCSEEEECCCCT
T ss_pred             ccEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEE-CCCCHhHhCCCCEEEECCCCH
Confidence            567789999999999999999999999999999999988653 455565542222211 111111345689999888643

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.45  E-value=6.7e-05  Score=66.15  Aligned_cols=74  Identities=20%  Similarity=0.271  Sum_probs=53.3

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCccc--ch---hcccccCCCCeeEEEecCCC
Q 012352          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL--SL---ADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       378 ~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~--~~---~~l~~~~~~~~DilInaT~~  451 (465)
                      ...+++++|+|+|.+|+.++..|...|++|++++|++++.+.+.+..+...+  +.   +.+.+..+.++|+||.+++.
T Consensus        16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~   94 (155)
T 2g1u_A           16 KQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTND   94 (155)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSC
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCC
Confidence            3457899999999999999999999999999999999887665422332221  11   12222124578999999875

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=97.45  E-value=9.4e-05  Score=70.09  Aligned_cols=47  Identities=34%  Similarity=0.442  Sum_probs=40.2

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEE-EECCHHHHHHHHHHH
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVI-ANRTYDRARELAETV  424 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i-~~R~~~~a~~la~~~  424 (465)
                      .+++|+++|+|+ ||+|++++..|++.|++|++ ..|+.++++++.+++
T Consensus         4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~   52 (255)
T 3icc_A            4 MLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEI   52 (255)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHH
Confidence            467899999998 49999999999999998887 478888888777665

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.44  E-value=0.0001  Score=68.14  Aligned_cols=68  Identities=22%  Similarity=0.250  Sum_probs=50.2

Q ss_pred             EEEEEc-cchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC-----CcccchhcccccCCCCeeEEEecCCCC
Q 012352          383 LFVVIG-AGGAGKALAYGAKAKGARVVIANRTYDRARELAETVG-----GHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       383 ~vlV~G-aGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~-----~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      +++|+| +|.+|++++..|.+.|.+|++++|++++++.+.+.++     ... ...++.+ .+.++|+||++++..
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~D~Vi~~~~~~   75 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASI-TGMKNED-AAEACDIAVLTIPWE   75 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCE-EEEEHHH-HHHHCSEEEECSCHH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCC-ChhhHHH-HHhcCCEEEEeCChh
Confidence            589999 9999999999999999999999999999888876543     111 1122222 234578888887743

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.43  E-value=8.1e-05  Score=70.97  Aligned_cols=40  Identities=25%  Similarity=0.371  Sum_probs=34.9

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHH
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDR  416 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~  416 (465)
                      ..+.++++.|+|+|.+|.+++..|++.|.+|++++|++++
T Consensus        15 ~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~   54 (245)
T 3dtt_A           15 LYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKA   54 (245)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence            4567889999999999999999999999999999999998

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=97.43  E-value=1.7e-05  Score=76.65  Aligned_cols=75  Identities=25%  Similarity=0.309  Sum_probs=50.3

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchh-------cccccCCCCeeEEEec
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA-------DLENFNPEDGMILANT  448 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~-------~l~~~~~~~~DilIna  448 (465)
                      ..+++|++||+|++ |+|++++..|++.|++|++++|+.++.++.. .+.....+.+       ++.+ ..+..|+|||+
T Consensus        24 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~-~~~~Dv~~~~~~~~~~~~~~~-~~g~iD~lvnn  101 (266)
T 3uxy_A           24 QGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAADL-HLPGDLREAAYADGLPGAVAA-GLGRLDIVVNN  101 (266)
T ss_dssp             --CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCCSE-ECCCCTTSHHHHHHHHHHHHH-HHSCCCEEEEC
T ss_pred             hCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHhhh-ccCcCCCCHHHHHHHHHHHHH-hcCCCCEEEEC
Confidence            35788999999984 9999999999999999999999866533220 0000111111       1111 23578999999


Q ss_pred             CCCCC
Q 012352          449 TSIGM  453 (465)
Q Consensus       449 T~~gm  453 (465)
                      +++..
T Consensus       102 Ag~~~  106 (266)
T 3uxy_A          102 AGVIS  106 (266)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            98764

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.42  E-value=8.9e-05  Score=68.21  Aligned_cols=68  Identities=22%  Similarity=0.249  Sum_probs=50.2

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchhcccccCCCCeeEEEecCCCC
Q 012352          383 LFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       383 ~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      +|+|+|+ |++|++++..|.+.|++|+++.|++++...+.  -+...  .++.+.....+.++|+|||+++..
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~   72 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH--KDINILQKDIFDLTLSDLSDQNVVVDAYGIS   72 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC--SSSEEEECCGGGCCHHHHTTCSEEEECCCSS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc--CCCeEEeccccChhhhhhcCCCEEEECCcCC
Confidence            6899997 79999999999999999999999998877654  12222  233222111346789999999874

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=97.42  E-value=0.00013  Score=68.59  Aligned_cols=73  Identities=29%  Similarity=0.433  Sum_probs=53.0

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEE-EECCHHHHHHHHHHH---CCcc----cchh---ccccc------CCCCe
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVI-ANRTYDRARELAETV---GGHA----LSLA---DLENF------NPEDG  442 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i-~~R~~~~a~~la~~~---~~~~----~~~~---~l~~~------~~~~~  442 (465)
                      +|+++|+|+ ||+|++++..|++.|++|++ ..|+.++.+++.+++   +...    .|+.   ++.+.      ..+..
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   80 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI   80 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            478999988 59999999999999999988 589998888776655   2221    1221   11110      23578


Q ss_pred             eEEEecCCCCC
Q 012352          443 MILANTTSIGM  453 (465)
Q Consensus       443 DilInaT~~gm  453 (465)
                      |+|||+++...
T Consensus        81 d~li~~Ag~~~   91 (244)
T 1edo_A           81 DVVVNNAGITR   91 (244)
T ss_dssp             SEEEECCCCCC
T ss_pred             CEEEECCCCCC
Confidence            99999998764

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=97.42  E-value=0.00015  Score=78.51  Aligned_cols=77  Identities=27%  Similarity=0.316  Sum_probs=48.9

Q ss_pred             ccccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEEC---------CHHHHHHHHHHHC---Ccc-cch---hcc----
Q 012352          376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR---------TYDRARELAETVG---GHA-LSL---ADL----  434 (465)
Q Consensus       376 ~~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R---------~~~~a~~la~~~~---~~~-~~~---~~l----  434 (465)
                      ...+++|.+||+|++ |+|++++..|++.|++|++++|         +.++++++++++.   ... .++   +++    
T Consensus        14 ~~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d~~~~~~~~   93 (613)
T 3oml_A           14 KLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNSVIDGAKVI   93 (613)
T ss_dssp             -CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCCEEECCCCGGGHHHHH
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCCHHHHHHHH
Confidence            356889999999985 9999999999999999999987         6677777777663   111 122   111    


Q ss_pred             ---cccCCCCeeEEEecCCCCC
Q 012352          435 ---ENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       435 ---~~~~~~~~DilInaT~~gm  453 (465)
                         .+ ..+..|+|||++++..
T Consensus        94 ~~~~~-~~g~iDiLVnnAGi~~  114 (613)
T 3oml_A           94 ETAIK-AFGRVDILVNNAGILR  114 (613)
T ss_dssp             C-----------CEECCCCCCC
T ss_pred             HHHHH-HCCCCcEEEECCCCCC
Confidence               11 3467999999998764

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.41  E-value=0.00054  Score=70.46  Aligned_cols=69  Identities=25%  Similarity=0.191  Sum_probs=51.9

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~  450 (465)
                      ..+.||+++|+|.|.+|++++..|..+|++|++++|++.++.... ..+....+++   + .+.++|+||.|++
T Consensus       216 ~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~-~~G~~v~~Le---e-al~~ADIVi~atg  284 (435)
T 3gvp_A          216 MMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQAC-MDGFRLVKLN---E-VIRQVDIVITCTG  284 (435)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCEECCHH---H-HTTTCSEEEECSS
T ss_pred             ceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHH-HcCCEeccHH---H-HHhcCCEEEECCC
Confidence            467899999999999999999999999999999999987765432 3333233333   2 3446788888654

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.41  E-value=0.00053  Score=70.79  Aligned_cols=69  Identities=32%  Similarity=0.331  Sum_probs=52.4

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~  450 (465)
                      ..+.||+++|+|.|.+|++++..+..+|++|++++|++.++.+.. ..+....+++++    +.++|+||.+|+
T Consensus       243 ~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~-~~G~~vv~LeEl----L~~ADIVv~atg  311 (464)
T 3n58_A          243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAA-MDGFEVVTLDDA----ASTADIVVTTTG  311 (464)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH-HTTCEECCHHHH----GGGCSEEEECCS
T ss_pred             CcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHH-hcCceeccHHHH----HhhCCEEEECCC
Confidence            568899999999999999999999999999999999987754432 333333344332    345788887765

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=97.40  E-value=7.2e-05  Score=71.85  Aligned_cols=71  Identities=18%  Similarity=0.279  Sum_probs=51.2

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCH-------------------HHHHHHHHHHCC---c--c--c--
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY-------------------DRARELAETVGG---H--A--L--  429 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~-------------------~~a~~la~~~~~---~--~--~--  429 (465)
                      +++++|+|+|+||+|..++..|+..|+ +++|++++.                   .|++.+++.+..   .  .  .  
T Consensus        26 l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~  105 (251)
T 1zud_1           26 LLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQ  105 (251)
T ss_dssp             HHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             HhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEec
Confidence            567899999999999999999999999 999995442                   678887776631   1  1  1  


Q ss_pred             --chhcccccCCCCeeEEEecCC
Q 012352          430 --SLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       430 --~~~~l~~~~~~~~DilInaT~  450 (465)
                        +.+++.+ .+.++|+||+||.
T Consensus       106 ~~~~~~~~~-~~~~~DvVi~~~d  127 (251)
T 1zud_1          106 RLTGEALKD-AVARADVVLDCTD  127 (251)
T ss_dssp             CCCHHHHHH-HHHHCSEEEECCS
T ss_pred             cCCHHHHHH-HHhcCCEEEECCC
Confidence              1111222 2346899999985

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.40  E-value=0.00023  Score=68.37  Aligned_cols=76  Identities=21%  Similarity=0.252  Sum_probs=53.2

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEE-CCHHHHHHHHHHHC---Ccc----cchhc---cccc------CC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIAN-RTYDRARELAETVG---GHA----LSLAD---LENF------NP  439 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~-R~~~~a~~la~~~~---~~~----~~~~~---l~~~------~~  439 (465)
                      .+.+|+++|+|+ ||+|++++..|++.|++|++++ |+.+..+++.+.+.   ...    .|+.+   +.++      ..
T Consensus        22 ~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  101 (269)
T 3gk3_A           22 MQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADF  101 (269)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             hhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            467899999998 5999999999999999999988 77777776665542   111    23221   1110      23


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +..|+|||++++..
T Consensus       102 g~id~li~nAg~~~  115 (269)
T 3gk3_A          102 GKVDVLINNAGITR  115 (269)
T ss_dssp             SCCSEEEECCCCCC
T ss_pred             CCCCEEEECCCcCC
Confidence            57899999998764

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=97.39  E-value=0.00011  Score=68.87  Aligned_cols=73  Identities=25%  Similarity=0.301  Sum_probs=53.1

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEE-ECCHHHHHHHHHHHC---Cc--c-c--chhc---cccc------CCCC
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIA-NRTYDRARELAETVG---GH--A-L--SLAD---LENF------NPED  441 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~-~R~~~~a~~la~~~~---~~--~-~--~~~~---l~~~------~~~~  441 (465)
                      +|+++|+|+ ||+|++++..|++.|++|+++ +|+.++.+++.+++.   ..  . +  ++.+   +.+.      ..+.
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLGG   80 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcCC
Confidence            368999988 599999999999999999988 899998888776652   21  1 1  2211   1110      1357


Q ss_pred             eeEEEecCCCCC
Q 012352          442 GMILANTTSIGM  453 (465)
Q Consensus       442 ~DilInaT~~gm  453 (465)
                      .|+|||+++...
T Consensus        81 ~d~li~~Ag~~~   92 (245)
T 2ph3_A           81 LDTLVNNAGITR   92 (245)
T ss_dssp             CCEEEECCCCCC
T ss_pred             CCEEEECCCCCC
Confidence            899999998753

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=97.39  E-value=0.0001  Score=75.84  Aligned_cols=102  Identities=15%  Similarity=0.041  Sum_probs=61.4

Q ss_pred             EEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHH-CCCeEEEEECCHHHHH------
Q 012352          347 LFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKA-KGARVVIANRTYDRAR------  418 (465)
Q Consensus       347 l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~-~G~~v~i~~R~~~~a~------  418 (465)
                      ++-.++.-.|....+.+.+.-..   ........+|+|||+|++ |+|++++.+|++ .|++|++++|+.+.++      
T Consensus        30 ~~~~~a~p~g~~~~v~~qi~y~~---~~~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~a  106 (422)
T 3s8m_A           30 FICTTTHPLGCERNVLEQIAATR---ARGVRNDGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTA  106 (422)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHHH---HTCCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCH
T ss_pred             eeeecCCchhHHHHHHHHHHHHh---hccccccCCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhccc
Confidence            44455666666665543321000   000111247999999996 999999999999 9999999998754321      


Q ss_pred             ---------HHHHHHCCcc----cchhc----------ccccCC-CCeeEEEecCCCC
Q 012352          419 ---------ELAETVGGHA----LSLAD----------LENFNP-EDGMILANTTSIG  452 (465)
Q Consensus       419 ---------~la~~~~~~~----~~~~~----------l~~~~~-~~~DilInaT~~g  452 (465)
                               +.++..+...    .|+.+          +.+ .+ +..|+|||+++++
T Consensus       107 g~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v~~~v~~i~~-~~~G~IDiLVNNAG~~  163 (422)
T 3s8m_A          107 GWYNSAAFDKHAKAAGLYSKSINGDAFSDAARAQVIELIKT-EMGGQVDLVVYSLASP  163 (422)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHH-HSCSCEEEEEECCCCS
T ss_pred             ccchhHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH-HcCCCCCEEEEcCccc
Confidence                     2333344322    12211          112 46 7899999999873

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=97.39  E-value=7.5e-05  Score=71.19  Aligned_cols=71  Identities=13%  Similarity=0.091  Sum_probs=51.0

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHH--HHCCccc--chhccccc------CCCCeeEEEecCC
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAE--TVGGHAL--SLADLENF------NPEDGMILANTTS  450 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~--~~~~~~~--~~~~l~~~------~~~~~DilInaT~  450 (465)
                      |++||+|+ ||+|++++..|++.|++|++++|+.++.+.+.+  ..+....  +.+++.+.      ..+..|+|||+++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lv~nAg   81 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDI   81 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEECC
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCcEEEECHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            57999998 599999999999999999999999887776654  1132211  22221110      2357899999998


Q ss_pred             CC
Q 012352          451 IG  452 (465)
Q Consensus       451 ~g  452 (465)
                      +.
T Consensus        82 ~~   83 (254)
T 1zmt_A           82 FA   83 (254)
T ss_dssp             CC
T ss_pred             cC
Confidence            75

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.39  E-value=0.00015  Score=73.69  Aligned_cols=72  Identities=24%  Similarity=0.211  Sum_probs=55.4

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccc-----------------------hhcc
Q 012352          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALS-----------------------LADL  434 (465)
Q Consensus       378 ~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~-----------------------~~~l  434 (465)
                      .+.+++|+|+|+|.+|+.++..+..+|++|++++|++++.+.+.+ ++...++                       .+++
T Consensus       181 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~-lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l  259 (381)
T 3p2y_A          181 TVKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS-VGAQWLDLGIDAAGEGGYARELSEAERAQQQQAL  259 (381)
T ss_dssp             EECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH-TTCEECCCC-------------CHHHHHHHHHHH
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCeEEeccccccccccchhhhhHHHHhhhHHHH
Confidence            356789999999999999999999999999999999998877654 5543222                       1123


Q ss_pred             cccCCCCeeEEEecCCC
Q 012352          435 ENFNPEDGMILANTTSI  451 (465)
Q Consensus       435 ~~~~~~~~DilInaT~~  451 (465)
                      .+ .+.++|+||+++.+
T Consensus       260 ~e-~l~~aDIVI~tv~i  275 (381)
T 3p2y_A          260 ED-AITKFDIVITTALV  275 (381)
T ss_dssp             HH-HHTTCSEEEECCCC
T ss_pred             HH-HHhcCCEEEECCCC
Confidence            33 45789999998643

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.38  E-value=0.00045  Score=62.33  Aligned_cols=73  Identities=11%  Similarity=0.105  Sum_probs=55.3

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHCCccc--ch---hccccc-CCCCeeEEEecCC
Q 012352          378 ALAGKLFVVIGAGGAGKALAYGAKAK-GARVVIANRTYDRARELAETVGGHAL--SL---ADLENF-NPEDGMILANTTS  450 (465)
Q Consensus       378 ~l~~k~vlV~GaGg~g~ai~~~L~~~-G~~v~i~~R~~~~a~~la~~~~~~~~--~~---~~l~~~-~~~~~DilInaT~  450 (465)
                      ++.+++++|+|+|.+|+.++..|.+. |++|++++|++++.+.+.+ .+...+  +.   +.+.+. ...++|+||.++|
T Consensus        36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~-~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~  114 (183)
T 3c85_A           36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRS-EGRNVISGDATDPDFWERILDTGHVKLVLLAMP  114 (183)
T ss_dssp             CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH-TTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH-CCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC
Confidence            45577899999999999999999999 9999999999999887653 343322  22   223332 2567999999987


Q ss_pred             C
Q 012352          451 I  451 (465)
Q Consensus       451 ~  451 (465)
                      -
T Consensus       115 ~  115 (183)
T 3c85_A          115 H  115 (183)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.37  E-value=0.00035  Score=60.48  Aligned_cols=70  Identities=21%  Similarity=0.172  Sum_probs=53.3

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCccc--ch---hcccccCCCCeeEEEecCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL--SL---ADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~--~~---~~l~~~~~~~~DilInaT~~  451 (465)
                      .++++|+|.|.+|+.++..|.+.|++|+++++++++.+.+.+ .+...+  +.   +.+.+....++|++|.+++-
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~   81 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILTIPN   81 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEECCSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEECCC
Confidence            357999999999999999999999999999999999888765 343221  11   12322234678999999874

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.37  E-value=0.00015  Score=68.87  Aligned_cols=76  Identities=20%  Similarity=0.237  Sum_probs=51.4

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEE-CCHHHHHHHHHHH---CCcc----cchh---cc-------ccc
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIAN-RTYDRARELAETV---GGHA----LSLA---DL-------ENF  437 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~-R~~~~a~~la~~~---~~~~----~~~~---~l-------~~~  437 (465)
                      ...++|++||+|+ ||+|++++..|++.|++|++.. |+.++.+++.+++   +...    .++.   ++       .+ 
T Consensus         9 ~~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~-   87 (256)
T 3ezl_A            9 MVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKA-   87 (256)
T ss_dssp             ----CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHH-
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHH-
Confidence            4567899999998 4999999999999999988876 7666666555544   2221    1221   11       11 


Q ss_pred             CCCCeeEEEecCCCCC
Q 012352          438 NPEDGMILANTTSIGM  453 (465)
Q Consensus       438 ~~~~~DilInaT~~gm  453 (465)
                      ..+..|+|||++++..
T Consensus        88 ~~g~id~lv~~Ag~~~  103 (256)
T 3ezl_A           88 EVGEIDVLVNNAGITR  103 (256)
T ss_dssp             HTCCEEEEEECCCCCC
T ss_pred             hcCCCCEEEECCCCCC
Confidence            3467999999998764

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.36  E-value=0.00025  Score=67.76  Aligned_cols=76  Identities=18%  Similarity=0.234  Sum_probs=52.2

Q ss_pred             ccCCcEEEEEccc-h--hHHHHHHHHHHCCCeEEEEECCHHHHHH---HHHHHCC-cc----cchhc---cccc------
Q 012352          378 ALAGKLFVVIGAG-G--AGKALAYGAKAKGARVVIANRTYDRARE---LAETVGG-HA----LSLAD---LENF------  437 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g--~g~ai~~~L~~~G~~v~i~~R~~~~a~~---la~~~~~-~~----~~~~~---l~~~------  437 (465)
                      ++++|+++|+|++ +  +|++++..|++.|++|+++.|+....+.   +.++++. ..    .|+.+   +.++      
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   83 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE   83 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH
Confidence            5778999999984 4  9999999999999999999998644333   3333332 11    12211   1110      


Q ss_pred             CCCCeeEEEecCCCCC
Q 012352          438 NPEDGMILANTTSIGM  453 (465)
Q Consensus       438 ~~~~~DilInaT~~gm  453 (465)
                      ..+..|+|||+++...
T Consensus        84 ~~g~id~li~~Ag~~~   99 (266)
T 3oig_A           84 QVGVIHGIAHCIAFAN   99 (266)
T ss_dssp             HHSCCCEEEECCCCCC
T ss_pred             HhCCeeEEEEcccccc
Confidence            2357899999998753

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=97.36  E-value=9.4e-05  Score=70.59  Aligned_cols=78  Identities=15%  Similarity=0.219  Sum_probs=51.1

Q ss_pred             ccccCCcEEEEEcc-chhHHHHHHHHHHCC---CeEEEEECCHHHHHHHHHHH--CCcc----cchhc---cccc-----
Q 012352          376 SSALAGKLFVVIGA-GGAGKALAYGAKAKG---ARVVIANRTYDRARELAETV--GGHA----LSLAD---LENF-----  437 (465)
Q Consensus       376 ~~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G---~~v~i~~R~~~~a~~la~~~--~~~~----~~~~~---l~~~-----  437 (465)
                      ...+++|++||+|+ ||+|++++..|++.|   ++|++++|+.++.+.+.+..  +...    .++.+   +.++     
T Consensus        16 ~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~   95 (267)
T 1sny_A           16 PRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIE   95 (267)
T ss_dssp             ----CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHHHHHHHHHH
Confidence            35578899999998 599999999999999   89999999977555443211  2211    22221   1110     


Q ss_pred             -CCC--CeeEEEecCCCCC
Q 012352          438 -NPE--DGMILANTTSIGM  453 (465)
Q Consensus       438 -~~~--~~DilInaT~~gm  453 (465)
                       ..+  ..|+|||+++...
T Consensus        96 ~~~g~~~id~li~~Ag~~~  114 (267)
T 1sny_A           96 GVTKDQGLNVLFNNAGIAP  114 (267)
T ss_dssp             HHHGGGCCSEEEECCCCCC
T ss_pred             HhcCCCCccEEEECCCcCC
Confidence             122  6899999998754

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=97.35  E-value=0.00042  Score=70.30  Aligned_cols=147  Identities=16%  Similarity=0.176  Sum_probs=88.4

Q ss_pred             cCCCeeEeccccccHHHHHHHhh--cCCCCeeEeccCchHHHhhhccccCHHHHhccceeeEEEeccCCeEEEEeccHHH
Q 012352          279 VGFNGVFVHLLVDDIAKFFQTYS--SNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG  356 (465)
Q Consensus       279 ~gl~~~y~~~~~~~l~~~~~~l~--~~~~~G~~vT~P~K~~v~~~~d~~~~~A~~~gavNtv~~~~~~g~l~G~NTD~~G  356 (465)
                      -|+|..=..+++.+.++|++.++  .+.|.|++.--=-..+.+..++++-..    ..+.            =+|-|..|
T Consensus       107 agid~~pi~ldv~~~dE~v~~vk~~~p~f~~i~lED~~~p~af~il~r~r~~----~~Ip------------vf~DDiqG  170 (388)
T 1vl6_A          107 ADIDAFPICLSESEEEKIISIVKSLEPSFGGINLEDIGAPKCFRILQRLSEE----MNIP------------VFHDDQQG  170 (388)
T ss_dssp             HCCEEEEEECSCCCHHHHHHHHHHTGGGCSEEEECSCCTTHHHHHHHHHHHH----CSSC------------EEEHHHHH
T ss_pred             cCCceEeEEeCCCCHHHHHHHHHHcCCcceEeCHhhcCCHHHHHHHHHhhhh----cCcc------------eecccccc
Confidence            36775545566678888877774  357888776442233455555443332    1111            22334333


Q ss_pred             --HHH--HHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECC----HHHH--------HH
Q 012352          357 --AIS--AIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT----YDRA--------RE  419 (465)
Q Consensus       357 --~~~--~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~----~~~a--------~~  419 (465)
                        .+.  ++...++-       .+..+.+.+|+|+|+|.+|.+++..|...|+ +|+++||+    .++.        +.
T Consensus       171 TasV~lAal~~A~~i-------~g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~  243 (388)
T 1vl6_A          171 TAVVVSAAFLNALKL-------TEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLE  243 (388)
T ss_dssp             HHHHHHHHHHHHHHH-------HTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHH
T ss_pred             HHHHHHHHHHHHHHH-------hCCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHH
Confidence              111  12111110       1236788999999999999999999999999 89999998    6553        33


Q ss_pred             HHHHHCCcccchhcccccCCCCeeEEEecCC
Q 012352          420 LAETVGGHALSLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       420 la~~~~~~~~~~~~l~~~~~~~~DilInaT~  450 (465)
                      ++++.+. .....++.+ .+.++|++|-+++
T Consensus       244 ~A~~~~~-~~~~~~L~e-av~~ADVlIG~Sa  272 (388)
T 1vl6_A          244 IARITNP-ERLSGDLET-ALEGADFFIGVSR  272 (388)
T ss_dssp             HHHTSCT-TCCCSCHHH-HHTTCSEEEECSC
T ss_pred             HHHhhhc-cCchhhHHH-HHccCCEEEEeCC
Confidence            4443221 112333444 4567899999986

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.35  E-value=0.00034  Score=67.06  Aligned_cols=68  Identities=31%  Similarity=0.321  Sum_probs=50.1

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGAR-VVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~-v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      +.++.|+|+|.+|++++..|.+.|++ |++++|++++++.+.+.++....  .++.+ .+.++|+||.|+|.
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~--~~~~~-~~~~~Dvvi~av~~   78 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYT--TDLAE-VNPYAKLYIVSLKD   78 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEE--SCGGG-SCSCCSEEEECCCH
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCcee--CCHHH-HhcCCCEEEEecCH
Confidence            45799999999999999999999997 99999999999998887653321  12222 22345666666553

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=97.35  E-value=0.00013  Score=74.84  Aligned_cols=48  Identities=27%  Similarity=0.317  Sum_probs=42.2

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH  427 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~  427 (465)
                      +.+++|+|+|+|.+|++++..+..+|++|++++|++++.+.+ ++++..
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~-~~lGa~  217 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV-QSMGAE  217 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHH-HHTTCE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-HHcCCE
Confidence            568899999999999999999999999999999999887775 556654

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=97.33  E-value=3.5e-05  Score=73.31  Aligned_cols=72  Identities=19%  Similarity=0.343  Sum_probs=51.5

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccch---hcc-------cccCCCCeeEE
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL---ADL-------ENFNPEDGMIL  445 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~---~~l-------~~~~~~~~Dil  445 (465)
                      ..+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.   + ...|+   +++       .+ ..+..|+|
T Consensus        11 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~---~-~~~D~~~~~~~~~~~~~~~~-~~g~id~l   85 (247)
T 1uzm_A           11 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF---G-VEVDVTDSDAVDRAFTAVEE-HQGPVEVL   85 (247)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSE---E-EECCTTCHHHHHHHHHHHHH-HHSSCSEE
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHhc---C-eeccCCCHHHHHHHHHHHHH-HcCCCCEE
Confidence            4578899999998 59999999999999999999999876543321   0 11122   111       11 23568999


Q ss_pred             EecCCCCC
Q 012352          446 ANTTSIGM  453 (465)
Q Consensus       446 InaT~~gm  453 (465)
                      ||+++...
T Consensus        86 v~~Ag~~~   93 (247)
T 1uzm_A           86 VSNAGLSA   93 (247)
T ss_dssp             EEECSCCC
T ss_pred             EECCCCCC
Confidence            99998763

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=97.33  E-value=8.5e-05  Score=69.28  Aligned_cols=64  Identities=19%  Similarity=0.135  Sum_probs=46.3

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhccccc--CCCCeeEEEecCCCC
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENF--NPEDGMILANTTSIG  452 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~--~~~~~DilInaT~~g  452 (465)
                      +++|+++|+|++ |+|++++..|++.|++|++++|+.+          ....+.+++.++  ..+..|+|||+++..
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~----------~D~~~~~~v~~~~~~~g~id~lv~nAg~~   70 (223)
T 3uce_A            4 SDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG----------LDISDEKSVYHYFETIGAFDHLIVTAGSY   70 (223)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT----------CCTTCHHHHHHHHHHHCSEEEEEECCCCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc----------cCCCCHHHHHHHHHHhCCCCEEEECCCCC
Confidence            568999999984 9999999999999999999999754          011111111110  235789999999875

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=97.33  E-value=0.00019  Score=67.23  Aligned_cols=70  Identities=14%  Similarity=0.020  Sum_probs=50.8

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHCCcc--cchh---cccccCCCCeeEEEecCCC
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAK--GARVVIANRTYDRARELAETVGGHA--LSLA---DLENFNPEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~--G~~v~i~~R~~~~a~~la~~~~~~~--~~~~---~l~~~~~~~~DilInaT~~  451 (465)
                      .+++++|+|+ |++|++++..|.+.  |++|+++.|++++.+.+..  +...  .++.   ++.+ .+.++|+|||+++.
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~--~~~~~~~D~~d~~~~~~-~~~~~d~vi~~a~~   79 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG--EADVFIGDITDADSINP-AFQGIDALVILTSA   79 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC--CTTEEECCTTSHHHHHH-HHTTCSEEEECCCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCC--CeeEEEecCCCHHHHHH-HHcCCCEEEEeccc
Confidence            4689999997 79999999999999  7899999999887655411  1111  2332   2333 34568999999986


Q ss_pred             C
Q 012352          452 G  452 (465)
Q Consensus       452 g  452 (465)
                      .
T Consensus        80 ~   80 (253)
T 1xq6_A           80 V   80 (253)
T ss_dssp             C
T ss_pred             c
Confidence            5

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=97.33  E-value=0.0002  Score=68.80  Aligned_cols=74  Identities=20%  Similarity=0.210  Sum_probs=53.9

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEE-ECCHHHHHHHHHHHC---Ccc----cchhc---cccc------CCCC
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIA-NRTYDRARELAETVG---GHA----LSLAD---LENF------NPED  441 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~-~R~~~~a~~la~~~~---~~~----~~~~~---l~~~------~~~~  441 (465)
                      ++|++||+|+ ||+|++++..|++.|++|++. .|+.++.+++.+.+.   ...    .|+.+   +.++      ..+.
T Consensus        25 ~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  104 (272)
T 4e3z_A           25 DTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFGR  104 (272)
T ss_dssp             CSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            4689999998 599999999999999998776 889888888777652   221    12221   1110      2357


Q ss_pred             eeEEEecCCCCC
Q 012352          442 GMILANTTSIGM  453 (465)
Q Consensus       442 ~DilInaT~~gm  453 (465)
                      .|+|||++++..
T Consensus       105 id~li~nAg~~~  116 (272)
T 4e3z_A          105 LDGLVNNAGIVD  116 (272)
T ss_dssp             CCEEEECCCCCC
T ss_pred             CCEEEECCCCCC
Confidence            899999998754

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.33  E-value=0.00012  Score=68.76  Aligned_cols=74  Identities=22%  Similarity=0.301  Sum_probs=52.2

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHCCc--c--cchh---ccccc------CCC--C
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKG--ARVVIANRTYDRARELAETVGGH--A--LSLA---DLENF------NPE--D  441 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G--~~v~i~~R~~~~a~~la~~~~~~--~--~~~~---~l~~~------~~~--~  441 (465)
                      ++|+++|+|+ ||+|++++..|++.|  ++|++++|+.++.+++.+..+..  .  .++.   ++.++      ..+  .
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~~   81 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDG   81 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGC
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHhccCCceEEEEeecCCHHHHHHHHHHHHHhcCCCC
Confidence            4689999998 599999999999999  89999999988877664321111  1  1221   11110      122  6


Q ss_pred             eeEEEecCCCCC
Q 012352          442 GMILANTTSIGM  453 (465)
Q Consensus       442 ~DilInaT~~gm  453 (465)
                      .|+|||+++...
T Consensus        82 id~li~~Ag~~~   93 (250)
T 1yo6_A           82 LSLLINNAGVLL   93 (250)
T ss_dssp             CCEEEECCCCCC
T ss_pred             CcEEEECCcccC
Confidence            899999998754

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=97.32  E-value=0.0001  Score=69.00  Aligned_cols=72  Identities=17%  Similarity=0.171  Sum_probs=50.9

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCCcc--cchh---cccccCCCCeeEEEecCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGHA--LSLA---DLENFNPEDGMILANTTS  450 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~~~--~~~~---~l~~~~~~~~DilInaT~  450 (465)
                      +.+|+++|+|+ |++|++++..|.+.|+  +|++++|++++...+... +...  .++.   ++.+ .+.++|+|||+++
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~-~~~~~~~D~~d~~~~~~-~~~~~d~vi~~ag   93 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYK-NVNQEVVDFEKLDDYAS-AFQGHDVGFCCLG   93 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGG-GCEEEECCGGGGGGGGG-GGSSCSEEEECCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccC-CceEEecCcCCHHHHHH-HhcCCCEEEECCC
Confidence            45789999997 7999999999999999  999999987654322111 1111  2332   3333 3557899999998


Q ss_pred             CC
Q 012352          451 IG  452 (465)
Q Consensus       451 ~g  452 (465)
                      ..
T Consensus        94 ~~   95 (242)
T 2bka_A           94 TT   95 (242)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=97.32  E-value=0.0008  Score=63.79  Aligned_cols=71  Identities=25%  Similarity=0.269  Sum_probs=49.7

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchh---ccccc------CCCCeeEE
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLA---DLENF------NPEDGMIL  445 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~---~l~~~------~~~~~Dil  445 (465)
                      ++++|+++|+|+ ||+|++++..|++.|++|++++|+.+.     +..+...  .|+.   ++.+.      ..+..|+|
T Consensus         4 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~-----~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~l   78 (250)
T 2fwm_X            4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ-----EQYPFATEVMDVADAAQVAQVCQRLLAETERLDAL   78 (250)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS-----SCCSSEEEECCTTCHHHHHHHHHHHHHHCSCCCEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh-----hcCCceEEEcCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            467899999998 599999999999999999999998652     1111111  1221   11110      24578999


Q ss_pred             EecCCCCC
Q 012352          446 ANTTSIGM  453 (465)
Q Consensus       446 InaT~~gm  453 (465)
                      ||+++...
T Consensus        79 v~~Ag~~~   86 (250)
T 2fwm_X           79 VNAAGILR   86 (250)
T ss_dssp             EECCCCCC
T ss_pred             EECCCcCC
Confidence            99998754

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=97.31  E-value=0.00028  Score=70.09  Aligned_cols=75  Identities=17%  Similarity=0.232  Sum_probs=51.4

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECC-----HHHHHHHHHHH---CCcc----cchhc---cccc-----
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT-----YDRARELAETV---GGHA----LSLAD---LENF-----  437 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~-----~~~a~~la~~~---~~~~----~~~~~---l~~~-----  437 (465)
                      +.+|+++|+|+ ||+|++++..|++.|++|++..|+     .++.+++.+.+   +...    .|+.+   +.+.     
T Consensus         3 m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~   82 (324)
T 3u9l_A            3 MSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQII   82 (324)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence            45789999998 599999999999999999987665     56666665543   3221    12211   1110     


Q ss_pred             -CCCCeeEEEecCCCCC
Q 012352          438 -NPEDGMILANTTSIGM  453 (465)
Q Consensus       438 -~~~~~DilInaT~~gm  453 (465)
                       ..+..|+|||+++++.
T Consensus        83 ~~~g~iD~lVnnAG~~~   99 (324)
T 3u9l_A           83 GEDGRIDVLIHNAGHMV   99 (324)
T ss_dssp             HHHSCCSEEEECCCCCB
T ss_pred             HHcCCCCEEEECCCcCC
Confidence             2357999999999764

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.31  E-value=0.00019  Score=66.97  Aligned_cols=67  Identities=16%  Similarity=0.187  Sum_probs=50.8

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      .+++.|+|+|.+|++++..|.+.|.+|++++|+.++++.+.+. +....   ++.+ .+.++|+||.|++..
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~-g~~~~---~~~~-~~~~~DvVi~av~~~   94 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPS-AAQVT---FQEE-AVSSPEVIFVAVFRE   94 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBT-TSEEE---EHHH-HTTSCSEEEECSCGG
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CCcee---cHHH-HHhCCCEEEECCChH
Confidence            4679999999999999999999999999999999987766432 22211   2223 345689999999854

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=97.30  E-value=0.0011  Score=66.88  Aligned_cols=68  Identities=29%  Similarity=0.413  Sum_probs=52.9

Q ss_pred             HHHHHHHHHhhhccCCCCCCCccc-ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCccc
Q 012352          354 YVGAISAIEDGLRGRLNVSGGVSS-ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL  429 (465)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~-~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~  429 (465)
                      +.|.+.+++..+...       +. ++.+|+|.|.|.|.+|+.++..|..+|++|++++++.++ .+++++++...+
T Consensus       154 g~Gv~~~~~~~~~~~-------G~~~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~-~~~a~~~ga~~v  222 (355)
T 1c1d_A          154 AVGVFEAMKATVAHR-------GLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER-VAHAVALGHTAV  222 (355)
T ss_dssp             HHHHHHHHHHHHHHT-------TCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHHHTTCEEC
T ss_pred             HHHHHHHHHHHHHhc-------CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHhcCCEEe
Confidence            566666665544321       24 689999999999999999999999999999999999877 667777765433

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.29  E-value=0.00044  Score=64.31  Aligned_cols=69  Identities=17%  Similarity=0.181  Sum_probs=54.6

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCccc-----chhcccccCCCCeeEEEecCCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL-----SLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~-----~~~~l~~~~~~~~DilInaT~~  451 (465)
                      +++|+|+|.+|+.++..|.+.|.+|++++|++++.+.+++..+...+     +.+.+.+..+.++|++|.+|+-
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~   75 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPR   75 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCC
Confidence            58999999999999999999999999999999999998877654321     2222333246789999999874

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.29  E-value=0.00072  Score=59.20  Aligned_cols=71  Identities=13%  Similarity=0.179  Sum_probs=53.0

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECC-HHHHHHHHHHHCC--ccc--c---hhcccccCCCCeeEEEecCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRT-YDRARELAETVGG--HAL--S---LADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~-~~~a~~la~~~~~--~~~--~---~~~l~~~~~~~~DilInaT~~  451 (465)
                      +++++|+|+|.+|+.++..|.+.|.+|++++|+ .++.+.+.+.+..  ..+  +   .+.+.+..+.++|+||.+|+-
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~   81 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN   81 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCC
Confidence            468999999999999999999999999999997 5777777765532  211  1   122333246789999999874

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=97.28  E-value=0.00027  Score=72.26  Aligned_cols=102  Identities=16%  Similarity=0.022  Sum_probs=64.5

Q ss_pred             EEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHH-CCCeEEEEECCHHHH-------
Q 012352          347 LFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKA-KGARVVIANRTYDRA-------  417 (465)
Q Consensus       347 l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~-~G~~v~i~~R~~~~a-------  417 (465)
                      ++-.|+--.|..+..++.+.-...   .....-.+|++||+|++ |+|++++..|++ .|++|++++|+.+..       
T Consensus        16 ~~~~~~hp~gc~~~v~~qi~~~~~---~~~~~~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~   92 (405)
T 3zu3_A           16 FICVTAHPTGCEANVKKQIDYVTT---EGPIANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTS   92 (405)
T ss_dssp             TEECCCCHHHHHHHHHHHHHHHHH---HCCCTTCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCH
T ss_pred             eeecCCCCHHHHHHHHHHHHHHHh---cCCcCCCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccc
Confidence            556677778877766543310000   00122457999999986 999999999999 999999998865431       


Q ss_pred             --------HHHHHHHCCcc----cchh---c-------ccccCCCCeeEEEecCCCC
Q 012352          418 --------RELAETVGGHA----LSLA---D-------LENFNPEDGMILANTTSIG  452 (465)
Q Consensus       418 --------~~la~~~~~~~----~~~~---~-------l~~~~~~~~DilInaT~~g  452 (465)
                              .+.++..+...    .|+.   +       +.+ ..+..|+|||+++++
T Consensus        93 gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~v~~~v~~i~~-~~G~IDiLVNNAG~~  148 (405)
T 3zu3_A           93 GWYNSAAFHKFAAQKGLYAKSINGDAFSDEIKQLTIDAIKQ-DLGQVDQVIYSLASP  148 (405)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHH-HTSCEEEEEECCCCS
T ss_pred             cchhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH-HcCCCCEEEEcCccc
Confidence                    22333334322    1221   1       112 457899999999875

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=97.27  E-value=0.00029  Score=67.52  Aligned_cols=76  Identities=20%  Similarity=0.260  Sum_probs=53.7

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEE-EECCHHHHHHHHHHHC---Cc--c--cchhc---cccc------CC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVI-ANRTYDRARELAETVG---GH--A--LSLAD---LENF------NP  439 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i-~~R~~~~a~~la~~~~---~~--~--~~~~~---l~~~------~~  439 (465)
                      ++.+|+++|+|+ ||+|++++..|++.|++|++ ..|+.++.++..+++.   ..  .  .|+.+   +.++      ..
T Consensus        23 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~  102 (267)
T 4iiu_A           23 NAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQH  102 (267)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            467899999998 59999999999999998865 5788888888777652   11  1  22221   1110      23


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +..|+|||+++...
T Consensus       103 g~id~li~nAg~~~  116 (267)
T 4iiu_A          103 GAWYGVVSNAGIAR  116 (267)
T ss_dssp             CCCSEEEECCCCCC
T ss_pred             CCccEEEECCCCCC
Confidence            57899999998764

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=97.27  E-value=0.00031  Score=75.85  Aligned_cols=74  Identities=31%  Similarity=0.381  Sum_probs=51.8

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH---CCcc----cch-hcccc----c--CCCCe
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHA----LSL-ADLEN----F--NPEDG  442 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~---~~~~----~~~-~~l~~----~--~~~~~  442 (465)
                      .+++|.++|+|++ |+|++++..|++.|++|++.+|..  ++++++++   +...    .++ ++...    .  ..+..
T Consensus       319 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~--~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~i  396 (604)
T 2et6_A          319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKD--ATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGTI  396 (604)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC--CHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHSCC
T ss_pred             ccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCcc--HHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhcCCC
Confidence            5789999999997 999999999999999999998632  22333333   3322    244 22111    0  34679


Q ss_pred             eEEEecCCCCC
Q 012352          443 MILANTTSIGM  453 (465)
Q Consensus       443 DilInaT~~gm  453 (465)
                      |+|||++++..
T Consensus       397 DiLVnNAGi~~  407 (604)
T 2et6_A          397 DILVNNAGILR  407 (604)
T ss_dssp             CEEEECCCCCC
T ss_pred             CEEEECCCCCC
Confidence            99999999764

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=97.27  E-value=0.00034  Score=63.83  Aligned_cols=70  Identities=26%  Similarity=0.352  Sum_probs=52.0

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchh---ccccc--CCCCeeEEEecCCCCC
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLA---DLENF--NPEDGMILANTTSIGM  453 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~---~l~~~--~~~~~DilInaT~~gm  453 (465)
                      |+++|+|+ ||+|++++..|++.  +|++++|+.++.+++.++++...  .|+.   ++.+.  ..++.|+|||+++...
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~~~   78 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREVGARALPADLADELEAKALLEEAGPLDLLVHAVGKAG   78 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHHTCEECCCCTTSHHHHHHHHHHHCSEEEEEECCCCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhccCcEEEeeCCCHHHHHHHHHhcCCCCEEEECCCcCC
Confidence            57999988 59999999999988  99999999999988887765322  2222   22221  1237999999998753

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=97.27  E-value=8.1e-05  Score=71.67  Aligned_cols=76  Identities=24%  Similarity=0.297  Sum_probs=54.0

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH---CCcc----cchhc---cccc------CCC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHA----LSLAD---LENF------NPE  440 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~---~~~~----~~~~~---l~~~------~~~  440 (465)
                      ++++|++||+|+ ||+|++++..|++.|++|++++|+.++.+++.+.+   +...    .|+.+   +.+.      ..+
T Consensus        31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g  110 (279)
T 3ctm_A           31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFG  110 (279)
T ss_dssp             CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHhC
Confidence            478899999988 59999999999999999999999876666555443   3221    12221   1110      234


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+|||+++...
T Consensus       111 ~id~li~~Ag~~~  123 (279)
T 3ctm_A          111 TIDVFVANAGVTW  123 (279)
T ss_dssp             CCSEEEECGGGST
T ss_pred             CCCEEEECCcccc
Confidence            6899999998653

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=97.26  E-value=0.00054  Score=70.61  Aligned_cols=73  Identities=15%  Similarity=0.096  Sum_probs=51.9

Q ss_pred             cCCcEEEEEccc-hhHHH--HHHHHHHCCCeEEEEECCH---------------HHHHHHHHHHCCcc----cchhc---
Q 012352          379 LAGKLFVVIGAG-GAGKA--LAYGAKAKGARVVIANRTY---------------DRARELAETVGGHA----LSLAD---  433 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~a--i~~~L~~~G~~v~i~~R~~---------------~~a~~la~~~~~~~----~~~~~---  433 (465)
                      ..+|+|||+|++ |+|++  ++.+|++.|++|++++|+.               +..+++++..+...    .|+.+   
T Consensus        58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~~  137 (418)
T 4eue_A           58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNET  137 (418)
T ss_dssp             CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHHH
Confidence            568999999986 99999  8888888899999999863               33344444444322    12211   


Q ss_pred             -------ccccCCCCeeEEEecCCCC
Q 012352          434 -------LENFNPEDGMILANTTSIG  452 (465)
Q Consensus       434 -------l~~~~~~~~DilInaT~~g  452 (465)
                             +.+ ..+..|+|||+++.+
T Consensus       138 v~~~v~~i~~-~~G~IDiLVnNAG~~  162 (418)
T 4eue_A          138 KDKVIKYIKD-EFGKIDLFVYSLAAP  162 (418)
T ss_dssp             HHHHHHHHHH-TTCCEEEEEECCCCS
T ss_pred             HHHHHHHHHH-HcCCCCEEEECCccc
Confidence                   122 457899999999875

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.26  E-value=0.0003  Score=68.47  Aligned_cols=42  Identities=19%  Similarity=0.252  Sum_probs=38.9

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET  423 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~  423 (465)
                      ++|.|+|+|.+|.+++..|+..|++|++++|++++++.+.+.
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~   46 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKR   46 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH
Confidence            689999999999999999999999999999999998877665

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=97.24  E-value=0.00083  Score=63.76  Aligned_cols=73  Identities=10%  Similarity=0.016  Sum_probs=48.9

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccch-------hcccccCCCCeeEEEecC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL-------ADLENFNPEDGMILANTT  449 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~-------~~l~~~~~~~~DilInaT  449 (465)
                      ...+|++||+|+ ||+|++++..|++.|++|++++|+.++....  .+.....+.       +++.+ ..+..|+|||++
T Consensus        19 ~~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~--~~~~d~~d~~~v~~~~~~~~~-~~g~iD~li~~A   95 (251)
T 3orf_A           19 SHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADH--SFTIKDSGEEEIKSVIEKINS-KSIKVDTFVCAA   95 (251)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSSE--EEECSCSSHHHHHHHHHHHHT-TTCCEEEEEECC
T ss_pred             cccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccccc--ceEEEeCCHHHHHHHHHHHHH-HcCCCCEEEECC
Confidence            345789999998 5999999999999999999999987653210  000000111       11222 456899999999


Q ss_pred             CCCC
Q 012352          450 SIGM  453 (465)
Q Consensus       450 ~~gm  453 (465)
                      ++..
T Consensus        96 g~~~   99 (251)
T 3orf_A           96 GGWS   99 (251)
T ss_dssp             CCCC
T ss_pred             ccCC
Confidence            8753

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.23  E-value=0.00062  Score=66.75  Aligned_cols=69  Identities=14%  Similarity=0.034  Sum_probs=52.5

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      .+++.|+|+|.+|.+++..|++.|++|++++|++++++.+.+. +... ...++.+ ...++|+||-++|..
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~-~~~~~~e-~~~~aDvvi~~vp~~   75 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAE-GACG-AAASARE-FAGVVDALVILVVNA   75 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT-TCSE-EESSSTT-TTTTCSEEEECCSSH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc-CCcc-ccCCHHH-HHhcCCEEEEECCCH
Confidence            3689999999999999999999999999999999999888754 2211 0223333 345678888888753

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.22  E-value=0.00026  Score=65.38  Aligned_cols=69  Identities=20%  Similarity=0.223  Sum_probs=50.3

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchhcccccCCCCeeEEEecCCCC
Q 012352          383 LFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       383 ~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      +++|+|+ |++|++++..|.+.|++|+++.|+.++...+... +...  .++.+.....+.++|+|||+++..
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~-~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~   73 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGA-TVATLVKEPLVLTEADLDSVDAVVDALSVP   73 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCT-TSEEEECCGGGCCHHHHTTCSEEEECCCCC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCC-CceEEecccccccHhhcccCCEEEECCccC
Confidence            5899998 7999999999999999999999999887655321 1111  233222111346789999999875

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=97.20  E-value=0.00054  Score=65.60  Aligned_cols=72  Identities=19%  Similarity=0.233  Sum_probs=50.2

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchh---ccccc------CCCCeeEE
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLA---DLENF------NPEDGMIL  445 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~---~l~~~------~~~~~Dil  445 (465)
                      .+++|++||+|+ ||+|++++..|++.|++|++++|+.++....    ....  .|+.   ++.++      ..++.|+|
T Consensus        25 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~----~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  100 (260)
T 3un1_A           25 RNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSADP----DIHTVAGDISKPETADRIVREGIERFGRIDSL  100 (260)
T ss_dssp             HTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCSST----TEEEEESCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcccC----ceEEEEccCCCHHHHHHHHHHHHHHCCCCCEE
Confidence            467899999998 5999999999999999999999986543221    1011  1221   11110      23578999


Q ss_pred             EecCCCCC
Q 012352          446 ANTTSIGM  453 (465)
Q Consensus       446 InaT~~gm  453 (465)
                      ||++++..
T Consensus       101 v~nAg~~~  108 (260)
T 3un1_A          101 VNNAGVFL  108 (260)
T ss_dssp             EECCCCCC
T ss_pred             EECCCCCC
Confidence            99998764

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.20  E-value=0.00066  Score=64.75  Aligned_cols=64  Identities=25%  Similarity=0.322  Sum_probs=51.9

Q ss_pred             EEEEEccchhHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKG-ARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G-~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~  450 (465)
                      ++.|+|+|.+|.+++..|.+.| .+|++++|++++++.+.+.++...  ..+..+ .. ++|+||-|+|
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~--~~~~~~-~~-~~D~vi~~v~   66 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVET--SATLPE-LH-SDDVLILAVK   66 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEE--ESSCCC-CC-TTSEEEECSC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEE--eCCHHH-Hh-cCCEEEEEeC
Confidence            5899999999999999999999 899999999999999988765432  122333 34 7889988887

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=97.20  E-value=0.00087  Score=64.23  Aligned_cols=68  Identities=21%  Similarity=0.247  Sum_probs=49.3

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc--c--cchhc---cccc------CCCCee
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH--A--LSLAD---LENF------NPEDGM  443 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~--~--~~~~~---l~~~------~~~~~D  443 (465)
                      ++++|++||+|+ ||+|++++..|++.|++|++++|+.++        +..  .  .|+.+   +.+.      ..+..|
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~--------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD   76 (264)
T 2dtx_A            5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG--------EAKYDHIECDVTNPDQVKASIDHIFKEYGSIS   76 (264)
T ss_dssp             GGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC--------SCSSEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc--------CCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            467899999998 599999999999999999999998654        111  1  12211   1110      235789


Q ss_pred             EEEecCCCCC
Q 012352          444 ILANTTSIGM  453 (465)
Q Consensus       444 ilInaT~~gm  453 (465)
                      +|||+++...
T Consensus        77 ~lv~~Ag~~~   86 (264)
T 2dtx_A           77 VLVNNAGIES   86 (264)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEECCCCCC
Confidence            9999998753

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.20  E-value=4.5e-05  Score=71.75  Aligned_cols=71  Identities=11%  Similarity=-0.031  Sum_probs=48.0

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccch---hccccc------CC--CCeeEEEe
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL---ADLENF------NP--EDGMILAN  447 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~---~~l~~~------~~--~~~DilIn  447 (465)
                      ++|++||+|+ ||+|++++..|++.|++|++++|+.++.+.   .......++   +++.+.      ..  +..|+|||
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~lv~   78 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQAD---SNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFC   78 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSS---EEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCcccccc---ccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence            4689999998 599999999999999999999998765321   000000121   111110      12  57999999


Q ss_pred             cCCCCC
Q 012352          448 TTSIGM  453 (465)
Q Consensus       448 aT~~gm  453 (465)
                      +++...
T Consensus        79 ~Ag~~~   84 (236)
T 1ooe_A           79 VAGGWA   84 (236)
T ss_dssp             CCCCCC
T ss_pred             CCcccC
Confidence            998754

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=97.17  E-value=9.6e-05  Score=69.88  Aligned_cols=71  Identities=14%  Similarity=0.162  Sum_probs=49.1

Q ss_pred             ccCCcEEEEEcc-----------------chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhc-------
Q 012352          378 ALAGKLFVVIGA-----------------GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLAD-------  433 (465)
Q Consensus       378 ~l~~k~vlV~Ga-----------------Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~-------  433 (465)
                      ++++|+|||+|+                 ||+|++++.+|+++|++|+++.|... .+ .  ..+...+++++       
T Consensus         5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~-l~-~--~~g~~~~dv~~~~~~~~~   80 (226)
T 1u7z_A            5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVS-LP-T--PPFVKRVDVMTALEMEAA   80 (226)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCC-CC-C--CTTEEEEECCSHHHHHHH
T ss_pred             CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcc-cc-c--CCCCeEEccCcHHHHHHH
Confidence            478999999988                 78999999999999999999987541 10 0  00111222221       


Q ss_pred             ccccCCCCeeEEEecCCCCC
Q 012352          434 LENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       434 l~~~~~~~~DilInaT~~gm  453 (465)
                      +.+ .++..|++||++++.-
T Consensus        81 v~~-~~~~~Dili~~Aav~d   99 (226)
T 1u7z_A           81 VNA-SVQQQNIFIGCAAVAD   99 (226)
T ss_dssp             HHH-HGGGCSEEEECCBCCS
T ss_pred             HHH-hcCCCCEEEECCcccC
Confidence            111 3467899999998764

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=97.15  E-value=0.00026  Score=66.22  Aligned_cols=46  Identities=26%  Similarity=0.367  Sum_probs=41.9

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEE-EECCHHHHHHHHHHHCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVI-ANRTYDRARELAETVGG  426 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i-~~R~~~~a~~la~~~~~  426 (465)
                      -.++.|+|+|.+|.+++..|.+.|.+|++ ++|+++++++++++++.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~   69 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGA   69 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCC
Confidence            35899999999999999999999999988 99999999999888764

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.14  E-value=0.00026  Score=71.41  Aligned_cols=69  Identities=16%  Similarity=0.180  Sum_probs=50.5

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccch---hcccccCCCCeeEEEecCCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL---ADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~---~~l~~~~~~~~DilInaT~~g  452 (465)
                      .+|+|+|+|.+|+.++..|++ ..+|++++|+.++++++.+......++.   +++.+ .+.++|+|||++|-.
T Consensus        17 mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~-~~~~~DvVi~~~p~~   88 (365)
T 3abi_A           17 MKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVE-VMKEFELVIGALPGF   88 (365)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHH-HHTTCSEEEECCCGG
T ss_pred             cEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHH-HHhCCCEEEEecCCc
Confidence            479999999999999999965 4699999999998877654321111222   33444 356789999999864

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=97.14  E-value=6.7e-05  Score=70.88  Aligned_cols=72  Identities=8%  Similarity=-0.028  Sum_probs=48.3

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccch---hccccc------CC--CCeeEEE
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL---ADLENF------NP--EDGMILA  446 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~---~~l~~~------~~--~~~DilI  446 (465)
                      .++|+++|+|+ ||+|++++..|++.|++|++++|+.++...   .......|+   +++.+.      ..  +..|+||
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD~lv   81 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEAS---ASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAIL   81 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSS---EEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhccC---CcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCCEEE
Confidence            45789999998 599999999999999999999998765321   000000122   111110      12  5799999


Q ss_pred             ecCCCCC
Q 012352          447 NTTSIGM  453 (465)
Q Consensus       447 naT~~gm  453 (465)
                      |++++..
T Consensus        82 ~~Ag~~~   88 (241)
T 1dhr_A           82 CVAGGWA   88 (241)
T ss_dssp             ECCCCCC
T ss_pred             EcccccC
Confidence            9998753

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.14  E-value=0.00043  Score=66.45  Aligned_cols=68  Identities=15%  Similarity=0.185  Sum_probs=52.2

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchhcccccCCCCeeEEEecCCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      .++|+|+|+|.+|+.++..|.+.|++|+++.|+..+...+.. .+...  .++.++.   +.++|+|||+++..
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~D~~d~~---~~~~d~vi~~a~~~   74 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA-SGAEPLLWPGEEPS---LDGVTHLLISTAPD   74 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH-TTEEEEESSSSCCC---CTTCCEEEECCCCB
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh-CCCeEEEecccccc---cCCCCEEEECCCcc
Confidence            368999999999999999999999999999999988766643 12121  2333332   56789999998754

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=97.13  E-value=0.00052  Score=67.34  Aligned_cols=37  Identities=16%  Similarity=0.278  Sum_probs=34.2

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCH
Q 012352          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY  414 (465)
Q Consensus       378 ~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~  414 (465)
                      .+++++|+|+|+||.|..++..|+..|+ +++|++++.
T Consensus        33 kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           33 KIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            4667899999999999999999999998 999999876

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=97.13  E-value=0.00056  Score=65.14  Aligned_cols=75  Identities=16%  Similarity=0.127  Sum_probs=50.1

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECC-HHHHHHHHHHHCC---cc----cchhc---cccc------CCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT-YDRARELAETVGG---HA----LSLAD---LENF------NPE  440 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~-~~~a~~la~~~~~---~~----~~~~~---l~~~------~~~  440 (465)
                      +.+|+++|+|+ ||+|++++..|++.|++|+++.|+ .+..+.+.+.+..   ..    .|+.+   +.++      ..+
T Consensus         5 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   84 (264)
T 3i4f_A            5 RFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFG   84 (264)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             cccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            45789999998 599999999999999999998665 4444555544321   11    12221   1110      235


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+|||+++...
T Consensus        85 ~id~lv~~Ag~~~   97 (264)
T 3i4f_A           85 KIDFLINNAGPYV   97 (264)
T ss_dssp             CCCEEECCCCCCC
T ss_pred             CCCEEEECCcccc
Confidence            7899999998543

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=97.12  E-value=0.00059  Score=67.44  Aligned_cols=70  Identities=23%  Similarity=0.300  Sum_probs=52.6

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ..+.++++.|+|.|.+|++++..|...|++|++++|+.++ . .+.+++....+++++    +.++|+|+.++|..
T Consensus       138 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~-~~~~~g~~~~~l~el----l~~aDvV~l~~p~~  207 (307)
T 1wwk_A          138 IELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-E-RAKEVNGKFVDLETL----LKESDVVTIHVPLV  207 (307)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-H-HHHHTTCEECCHHHH----HHHCSEEEECCCCS
T ss_pred             cccCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-h-hHhhcCccccCHHHH----HhhCCEEEEecCCC
Confidence            4688999999999999999999999999999999998876 2 344454433333222    23568888887754

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.12  E-value=0.0004  Score=68.81  Aligned_cols=68  Identities=22%  Similarity=0.251  Sum_probs=50.6

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      ..+++.|+|+|.+|.+++..|++.|++|++++|++++++.+.+. +...  ..++.+ ...++|+||-++|.
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~--~~~~~e-~~~~aDvVi~~vp~   97 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAAL-GATI--HEQARA-AARDADIVVSMLEN   97 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT-TCEE--ESSHHH-HHTTCSEEEECCSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHC-CCEe--eCCHHH-HHhcCCEEEEECCC
Confidence            45689999999999999999999999999999999998888654 3211  112222 22356777777764

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.12  E-value=0.00043  Score=66.05  Aligned_cols=66  Identities=21%  Similarity=0.259  Sum_probs=52.7

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCccc-chhcccccCCCCeeEEEecCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL-SLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~-~~~~l~~~~~~~~DilInaT~~  451 (465)
                      .++.|+|+|.+|++++..|.+.|.+|++++|++++++.++++++.... +++++    +.++|+||.|+|.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~D~Vi~~v~~   70 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDL----IDQVDLVILGIKP   70 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHH----HHTCSEEEECSCG
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHH----HhcCCEEEEEeCc
Confidence            479999999999999999999999999999999999999887764321 22222    2357899998873

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.09  E-value=0.00012  Score=66.53  Aligned_cols=70  Identities=17%  Similarity=0.134  Sum_probs=48.8

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchh---cccccCCCCeeEEEecCCCC
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLA---DLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~---~l~~~~~~~~DilInaT~~g  452 (465)
                      +++++|+|+ |++|++++..|.+.|++|+++.|++++...+.. -+...  .++.   ++.+ .+.++|+|||+++..
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~D~~~~~~~~~-~~~~~d~vi~~a~~~   78 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGP-RPAHVVVGDVLQAADVDK-TVAGQDAVIVLLGTR   78 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSC-CCSEEEESCTTSHHHHHH-HHTTCSEEEECCCCT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccC-CceEEEEecCCCHHHHHH-HHcCCCEEEECccCC
Confidence            378999998 899999999999999999999999876432210 01111  1222   2333 345689999998754

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=97.08  E-value=0.0013  Score=64.99  Aligned_cols=71  Identities=24%  Similarity=0.295  Sum_probs=53.6

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchhc---c----cccCCCCeeEEEecCC
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLAD---L----ENFNPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~~---l----~~~~~~~~DilInaT~  450 (465)
                      .+++|+|+|+ ||+|++++..++..|++|++++|+.++.+.+ ++++.. .++..+   +    .+...+.+|++||+++
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~-~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g  223 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-KQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG  223 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCC
Confidence            4789999998 8999999999999999999999999887766 677643 233321   1    1111246999999987


Q ss_pred             C
Q 012352          451 I  451 (465)
Q Consensus       451 ~  451 (465)
                      .
T Consensus       224 ~  224 (333)
T 1v3u_A          224 G  224 (333)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.06  E-value=0.00022  Score=65.92  Aligned_cols=67  Identities=13%  Similarity=0.244  Sum_probs=49.7

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchh----cccccCCCCeeEEEecCCCCC
Q 012352          383 LFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLA----DLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       383 ~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~----~l~~~~~~~~DilInaT~~gm  453 (465)
                      +++|+|+ |++|++++..|.+.|++|+++.|+.++.+.+   -+...  .++.    ++.+ .+.++|+|||+++...
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~---~~~~~~~~D~~d~~~~~~~-~~~~~d~vi~~ag~~~   75 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY---NNVKAVHFDVDWTPEEMAK-QLHGMDAIINVSGSGG   75 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC---TTEEEEECCTTSCHHHHHT-TTTTCSEEEECCCCTT
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc---CCceEEEecccCCHHHHHH-HHcCCCEEEECCcCCC
Confidence            6899996 7999999999999999999999998765433   11111  2332    3344 5678999999998753

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=97.06  E-value=0.00077  Score=67.37  Aligned_cols=71  Identities=21%  Similarity=0.269  Sum_probs=52.5

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      ..+.++++.|+|.|.+|++++..|+..|++|++++|+.++  +.+..++....+++   + .+.++|+||.++|...
T Consensus       146 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~--~~~~~~g~~~~~l~---~-~l~~aDvVil~vp~~~  216 (334)
T 2dbq_A          146 YDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE--EVERELNAEFKPLE---D-LLRESDFVVLAVPLTR  216 (334)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH--HHHHHHCCEECCHH---H-HHHHCSEEEECCCCCT
T ss_pred             cCCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch--hhHhhcCcccCCHH---H-HHhhCCEEEECCCCCh
Confidence            4688999999999999999999999999999999999876  33344443222222   2 2235688888877653

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.05  E-value=0.00048  Score=70.48  Aligned_cols=48  Identities=25%  Similarity=0.307  Sum_probs=41.7

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH  427 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~  427 (465)
                      +.+.+|+|+|+|.+|..++..+..+|++|++++|++++.+.+.+ ++..
T Consensus       188 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~-~G~~  235 (405)
T 4dio_A          188 VPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVAS-LGAK  235 (405)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHH-TTCE
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-cCCc
Confidence            56789999999999999999999999999999999988776654 5543

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=97.05  E-value=0.00094  Score=66.81  Aligned_cols=70  Identities=17%  Similarity=0.231  Sum_probs=52.3

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ..+.++++.|+|.|.+|++++..|...|++|++++|+..+.  .+...+....++++    .+.++|+|+.++|..
T Consensus       161 ~~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~~~~~g~~~~~l~e----ll~~aDvV~l~~P~t  230 (335)
T 2g76_A          161 TELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPE--VSASFGVQQLPLEE----IWPLCDFITVHTPLL  230 (335)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHH--HHHHTTCEECCHHH----HGGGCSEEEECCCCC
T ss_pred             cCCCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh--hhhhcCceeCCHHH----HHhcCCEEEEecCCC
Confidence            46889999999999999999999999999999999987652  33444433223322    234578888887765

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.04  E-value=0.00045  Score=67.98  Aligned_cols=45  Identities=31%  Similarity=0.303  Sum_probs=40.6

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET  423 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~  423 (465)
                      ...+++.|+|.|.+|.+++..|.+.|++|++++|++++++.+++.
T Consensus         7 ~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~   51 (306)
T 3l6d_A            7 SFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAA   51 (306)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHC
Confidence            345689999999999999999999999999999999999888764

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.04  E-value=0.0015  Score=67.39  Aligned_cols=69  Identities=32%  Similarity=0.348  Sum_probs=52.2

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~  450 (465)
                      ..+.||+|+|+|.|.+|++++..|..+|++|+++++++.++.... ..+....+++   + .+.++|+||.+++
T Consensus       207 ~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~-~~G~~~~sL~---e-al~~ADVVilt~g  275 (436)
T 3h9u_A          207 VMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAA-MEGYQVLLVE---D-VVEEAHIFVTTTG  275 (436)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCEECCHH---H-HTTTCSEEEECSS
T ss_pred             CcccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHH-HhCCeecCHH---H-HHhhCCEEEECCC
Confidence            567899999999999999999999999999999999987765433 3333333333   3 3456788887664

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.02  E-value=0.00012  Score=67.88  Aligned_cols=70  Identities=21%  Similarity=0.212  Sum_probs=48.6

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccch---hcccccCCCCeeEEEecCCCC
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL---ADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~---~~l~~~~~~~~DilInaT~~g  452 (465)
                      ++++|+|+ |++|++++..|.+.|++|+++.|+.++...+...+.....++   +++.+ .+.++|+|||+++..
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~~~~~d~vi~~a~~~   78 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCE-VCKGADAVISAFNPG   78 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHH-HHTTCSEEEECCCC-
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHH-HhcCCCEEEEeCcCC
Confidence            68999997 799999999999999999999999876543321110001132   22333 345789999998765

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=97.02  E-value=0.00081  Score=66.60  Aligned_cols=70  Identities=26%  Similarity=0.375  Sum_probs=52.1

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ..+.++++.|+|.|.+|++++..|...|++|++++|+.++..  +..++....+++++    +.++|+|+.++|..
T Consensus       138 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~--~~~~g~~~~~l~el----l~~aDvVvl~~P~~  207 (313)
T 2ekl_A          138 LELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREK--AEKINAKAVSLEEL----LKNSDVISLHVTVS  207 (313)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHH--HHHTTCEECCHHHH----HHHCSEEEECCCCC
T ss_pred             CCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhH--HHhcCceecCHHHH----HhhCCEEEEeccCC
Confidence            568899999999999999999999999999999999887642  34444332233222    23567888877754

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=97.02  E-value=0.0013  Score=69.14  Aligned_cols=69  Identities=25%  Similarity=0.295  Sum_probs=54.3

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCC
Q 012352          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       378 ~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      .+.+++|+|+|.|++|+.++..+...|++|++++|++.+++.. .+++....+++++    +.++|+||.+++.
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A-~~~Ga~~~~l~e~----l~~aDvVi~atgt  339 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQA-MMEGFDVVTVEEA----IGDADIVVTATGN  339 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCEECCHHHH----GGGCSEEEECSSS
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCEEecHHHH----HhCCCEEEECCCC
Confidence            4678999999999999999999999999999999999886553 4555443343332    3468999999864

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.02  E-value=0.00049  Score=65.42  Aligned_cols=46  Identities=22%  Similarity=0.304  Sum_probs=41.9

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC----eEEEEECCHHHHHHHHHHHCCc
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGA----RVVIANRTYDRARELAETVGGH  427 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~----~v~i~~R~~~~a~~la~~~~~~  427 (465)
                      +++.|+|+|.+|.+++..|.+.|.    +|++++|++++++.++++++..
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~   52 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLT   52 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCE
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCE
Confidence            479999999999999999999997    9999999999999998877643

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=97.02  E-value=0.00053  Score=64.87  Aligned_cols=69  Identities=14%  Similarity=0.107  Sum_probs=46.3

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhccccc--CC-CCeeEEEecCCCCC
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENF--NP-EDGMILANTTSIGM  453 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~--~~-~~~DilInaT~~gm  453 (465)
                      |+++|+|+ ||+|++++..|++.|++|++++|+.++.+.   .+.....+.+++.++  .. +..|+|||+++...
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~---~~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~~~   74 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA---DLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGP   74 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC---CTTSHHHHHHHHHHHHTTCTTCCSEEEECCCCCT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc---ccccCCCCHHHHHHHHHHhCCCCCEEEECCCCCC
Confidence            57999998 599999999999999999999998754321   010000011111110  23 57899999998653

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=97.00  E-value=0.0011  Score=65.76  Aligned_cols=72  Identities=25%  Similarity=0.321  Sum_probs=55.5

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc-cchhc------ccccCCCCeeEEEecCCC
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA-LSLAD------LENFNPEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~-~~~~~------l~~~~~~~~DilInaT~~  451 (465)
                      .+++|+|+|+ ||+|.+++..++..|++|+++.|++++.+.++++++... ++..+      +.+...+.+|++||+++.
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~  228 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVGG  228 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCCc
Confidence            4789999999 899999999999999999999999999888767787532 33211      111122469999999873

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=97.00  E-value=0.00056  Score=66.53  Aligned_cols=67  Identities=21%  Similarity=0.352  Sum_probs=50.2

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGA---RVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~---~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~  450 (465)
                      .+++.|+|+|.+|.+++..|.+.|+   +|++++|++++++.+.++++....  .+..+ .+.++|+||-|++
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~--~~~~~-~~~~aDvVilav~   72 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTT--QDNRQ-GALNADVVVLAVK   72 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEE--SCHHH-HHSSCSEEEECSC
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEe--CChHH-HHhcCCeEEEEeC
Confidence            3679999999999999999999997   899999999999999887664321  11111 1234566666664

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.00  E-value=0.00036  Score=67.84  Aligned_cols=42  Identities=38%  Similarity=0.457  Sum_probs=38.5

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET  423 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~  423 (465)
                      +++.|+|+|.+|.+++..|++.|++|++++|++++++.+.+.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~   43 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAAL   43 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHT
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC
Confidence            579999999999999999999999999999999998887653

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.97  E-value=0.0014  Score=65.93  Aligned_cols=72  Identities=22%  Similarity=0.266  Sum_probs=56.2

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchh---cccccCCCCeeEEEecCCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLA---DLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~---~l~~~~~~~~DilInaT~~g  452 (465)
                      .+++|+|+|+|++|.+++..++..|++|+++.|++++.+.+.++++.. .++..   .+.+ ..+.+|++|++++..
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~-~~~~~D~vid~~g~~  262 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQA-AAGTLDGIIDTVSAV  262 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHH-TTTCEEEEEECCSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHH-hhCCCCEEEECCCcH
Confidence            578999999999999999999999999999999998877766677753 23332   2333 235799999998754

>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...

Probab=96.97  E-value=0.00085  Score=66.50  Aligned_cols=34  Identities=15%  Similarity=0.310  Sum_probs=30.8

Q ss_pred             CcEEEEEccc---hhHHHHHHHHHHCCCeEEEEECCH
Q 012352          381 GKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       381 ~k~vlV~GaG---g~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      +|.+||+|+|   |+|++++..|++.|++|++..|++
T Consensus         2 ~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~   38 (329)
T 3lt0_A            2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPP   38 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHH
T ss_pred             CcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCc
Confidence            6899999986   999999999999999999887765

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=96.97  E-value=0.0016  Score=62.73  Aligned_cols=66  Identities=20%  Similarity=0.141  Sum_probs=49.5

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      ++.|+|+|.+|.+++..|.+.|.+|++++|++++++.+. +.+.......++.+ . .++|+||.|+|.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~-~~g~~~~~~~~~~~-~-~~~D~vi~av~~   67 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV-ERQLVDEAGQDLSL-L-QTAKIIFLCTPI   67 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTSCSEEESCGGG-G-TTCSEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hCCCCccccCCHHH-h-CCCCEEEEECCH
Confidence            589999999999999999999999999999999988765 44421101122333 2 567888888874

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.96  E-value=0.0013  Score=63.71  Aligned_cols=65  Identities=12%  Similarity=0.147  Sum_probs=49.0

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCC
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      .++.|+|+ |.+|.+++..|.+.|++|++++|++++++.+.+ .+...   .+..+ ...++|+||.|+|.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~-~g~~~---~~~~~-~~~~aDvVi~av~~   77 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG-MGIPL---TDGDG-WIDEADVVVLALPD   77 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHH-TTCCC---CCSSG-GGGTCSEEEECSCH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHh-cCCCc---CCHHH-HhcCCCEEEEcCCc
Confidence            47999999 999999999999999999999999999888765 43221   12222 23456777777763

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=96.96  E-value=0.00079  Score=65.00  Aligned_cols=64  Identities=17%  Similarity=0.173  Sum_probs=49.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ++.|+|+|.+|.+++..|.+ |++|++++|++++++.+.+. +....+   ..+ .+.++|+||.|+|..
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~-g~~~~~---~~~-~~~~~D~vi~~v~~~   66 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEE-FGSEAV---PLE-RVAEARVIFTCLPTT   66 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHH-HCCEEC---CGG-GGGGCSEEEECCSSH
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHC-CCcccC---HHH-HHhCCCEEEEeCCCh
Confidence            68999999999999999999 99999999999998887764 322212   222 234678888888754

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.96  E-value=0.0019  Score=62.76  Aligned_cols=42  Identities=17%  Similarity=0.256  Sum_probs=38.6

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET  423 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~  423 (465)
                      .++.|+|+|.+|.+++..|++.|.+|++++|++++.+.+.+.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~   45 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKN   45 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhC
Confidence            479999999999999999999999999999999998888765

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=96.95  E-value=0.00076  Score=67.38  Aligned_cols=70  Identities=19%  Similarity=0.255  Sum_probs=51.6

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ..+.++++.|+|.|.+|++++..|+..|++|++++|+.++  +.+.+++....++++    .+.++|+||.++|..
T Consensus       142 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~--~~~~~~g~~~~~l~e----~l~~aDiVil~vp~~  211 (333)
T 2d0i_A          142 ESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV--NVEKELKARYMDIDE----LLEKSDIVILALPLT  211 (333)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH--HHHHHHTEEECCHHH----HHHHCSEEEECCCCC
T ss_pred             CCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch--hhhhhcCceecCHHH----HHhhCCEEEEcCCCC
Confidence            4688999999999999999999999999999999998875  333344432222222    123567888887765

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.95  E-value=0.00046  Score=67.93  Aligned_cols=72  Identities=22%  Similarity=0.216  Sum_probs=49.8

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH----CCc--c--cchhc---ccccCC--CCeeEE
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV----GGH--A--LSLAD---LENFNP--EDGMIL  445 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~----~~~--~--~~~~~---l~~~~~--~~~Dil  445 (465)
                      .+++|||+|+ |++|++++..|.+.|++|+++.|+.++..+..+.+    +..  .  .++.+   +.+ .+  .++|+|
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~~~~~~~d~v   82 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALAR-IFDAHPITAA   82 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHH-HHHHSCCCEE
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHH-HHhccCCcEE
Confidence            3579999997 79999999999999999999999765544443332    221  1  13222   222 11  268999


Q ss_pred             EecCCCC
Q 012352          446 ANTTSIG  452 (465)
Q Consensus       446 InaT~~g  452 (465)
                      ||+++..
T Consensus        83 ih~A~~~   89 (341)
T 3enk_A           83 IHFAALK   89 (341)
T ss_dssp             EECCCCC
T ss_pred             EECcccc
Confidence            9999764

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.95  E-value=0.0015  Score=63.08  Aligned_cols=69  Identities=9%  Similarity=0.139  Sum_probs=50.1

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCCcccchhcccccCCC-CeeEEEecCCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGHALSLADLENFNPE-DGMILANTTSIG  452 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~-~~DilInaT~~g  452 (465)
                      +++.|+|+|.+|.+++..|.+.|.  +|++++|++++.+.+. +.+.......+..+ .+. ++|+||.|+|..
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~-~~g~~~~~~~~~~~-~~~~~aDvVilavp~~   73 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-DLGIIDEGTTSIAK-VEDFSPDFVMLSSPVR   73 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-HTTSCSEEESCGGG-GGGTCCSEEEECSCHH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH-HCCCcccccCCHHH-HhcCCCCEEEEcCCHH
Confidence            479999999999999999999997  8999999999877654 44432101122323 344 678888888753

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.93  E-value=0.0012  Score=60.00  Aligned_cols=70  Identities=20%  Similarity=0.240  Sum_probs=50.3

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchh------ccccc-CCCCeeEEEecCC
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLA------DLENF-NPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~------~l~~~-~~~~~DilInaT~  450 (465)
                      .+++|+|+|+ ||+|++++..++..|++|++++|++++.+.+ .+++.. .++..      .+.+. ....+|++||+++
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~-~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g  116 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML-SRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLA  116 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH-HTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCC
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECCc
Confidence            4789999994 8999999999999999999999998876554 445532 22221      11110 1236999999986

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=96.92  E-value=0.0016  Score=64.00  Aligned_cols=71  Identities=20%  Similarity=0.225  Sum_probs=51.1

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc---cc-hhcccccCCCCeeEEEecCCCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA---LS-LADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~---~~-~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      ..|+|.|+|+|-||..++..|+ .|++|+++||++++++.+.+.+....   +. ..++.  .+.++|+||.|.|-.+
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~--~~~~aDlVieavpe~~   85 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLE--KVKDCDIVMEAVFEDL   85 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCT--TGGGCSEEEECCCSCH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHH--HHcCCCEEEEcCcCCH
Confidence            4689999999999999999999 99999999999999988877631100   10 11221  2345777777776553

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.92  E-value=0.001  Score=65.06  Aligned_cols=40  Identities=35%  Similarity=0.391  Sum_probs=36.7

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELA  421 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la  421 (465)
                      ++|.|+|+|.+|.+++..|++.|++|++++|++++++...
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~   55 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSK   55 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence            6899999999999999999999999999999998877643

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=96.92  E-value=0.0016  Score=67.75  Aligned_cols=75  Identities=32%  Similarity=0.419  Sum_probs=54.1

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCH--HHHHHHHHHHCCcc--cchhc---c-------cccCCC-C
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY--DRARELAETVGGHA--LSLAD---L-------ENFNPE-D  441 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~--~~a~~la~~~~~~~--~~~~~---l-------~~~~~~-~  441 (465)
                      .+++|++||+|+ ||+|++++..|++.|++|++++|+.  +..+++.++++...  .|+.+   +       .+ ..+ .
T Consensus       210 ~l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~-~~g~~  288 (454)
T 3u0b_A          210 PLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTE-HHGGK  288 (454)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHH-HSTTC
T ss_pred             CCCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHH-HcCCC
Confidence            467899999988 5999999999999999999999964  44555666665432  22221   1       11 233 4


Q ss_pred             eeEEEecCCCCC
Q 012352          442 GMILANTTSIGM  453 (465)
Q Consensus       442 ~DilInaT~~gm  453 (465)
                      .|+|||++++..
T Consensus       289 id~lV~nAGv~~  300 (454)
T 3u0b_A          289 VDILVNNAGITR  300 (454)
T ss_dssp             CSEEEECCCCCC
T ss_pred             ceEEEECCcccC
Confidence            999999998764

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=96.92  E-value=0.00037  Score=63.47  Aligned_cols=63  Identities=21%  Similarity=0.252  Sum_probs=42.9

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhccccc--CCCCeeEEEecCCCCC
Q 012352          383 LFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENF--NPEDGMILANTTSIGM  453 (465)
Q Consensus       383 ~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~--~~~~~DilInaT~~gm  453 (465)
                      +++|+|+ |++|++++..|+ .|++|++++|+.+       .+.....+.+++.+.  ..++.|+|||+++...
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~-------~~~~D~~~~~~~~~~~~~~~~~d~vi~~ag~~~   70 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKAEVITAGRHSG-------DVTVDITNIDSIKKMYEQVGKVDAIVSATGSAT   70 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS-------SEECCTTCHHHHHHHHHHHCCEEEEEECCCCCC
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc-------ceeeecCCHHHHHHHHHHhCCCCEEEECCCCCC
Confidence            7999998 599999999999 9999999999854       011111111111110  1246899999998653

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.91  E-value=0.0012  Score=65.55  Aligned_cols=70  Identities=17%  Similarity=0.124  Sum_probs=51.9

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEEC-CHHHHHHHHHHHCCccc-chhcccccCCCCeeEEEecCCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANR-TYDRARELAETVGGHAL-SLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R-~~~~a~~la~~~~~~~~-~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ..+.++++.|+|.|.+|++++..|...|++|++++| +.++.  .+.+++.... +++++    +.++|+|+.++|..
T Consensus       142 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~--~~~~~g~~~~~~l~el----l~~aDvVil~~p~~  213 (320)
T 1gdh_A          142 EKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS--DEASYQATFHDSLDSL----LSVSQFFSLNAPST  213 (320)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH--HHHHHTCEECSSHHHH----HHHCSEEEECCCCC
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh--hhhhcCcEEcCCHHHH----HhhCCEEEEeccCc
Confidence            468899999999999999999999999999999999 77652  3344554322 22222    23568888887754

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.90  E-value=0.00079  Score=67.32  Aligned_cols=37  Identities=16%  Similarity=0.287  Sum_probs=33.8

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCH
Q 012352          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY  414 (465)
Q Consensus       378 ~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~  414 (465)
                      .+++++|+|+|+||+|..++..|+..|+ ++++++++.
T Consensus        31 kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           31 IIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            4678999999999999999999999999 999998754

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=96.90  E-value=0.00094  Score=66.78  Aligned_cols=69  Identities=23%  Similarity=0.256  Sum_probs=50.5

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCC
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      ++++++.|+|+|.+|.+++..|.+.|.+|++++|+.+++.+.+.+.+....+.+   + .+.++|+||-|+|.
T Consensus        14 l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~~~~---e-~~~~aDvVilavp~   82 (338)
T 1np3_A           14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVK---T-AVAAADVVMILTPD   82 (338)
T ss_dssp             HHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHH---H-HHHTCSEEEECSCH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEccHH---H-HHhcCCEEEEeCCc
Confidence            456789999999999999999999999999999998776666666554322221   1 12346677776664

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=96.89  E-value=0.00077  Score=65.55  Aligned_cols=38  Identities=29%  Similarity=0.367  Sum_probs=34.0

Q ss_pred             cccCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEECCH
Q 012352          377 SALAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       377 ~~l~~k~vlV~Ga---Gg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      ..+++|++||+|+   ||+|++++..|++.|++|++++|+.
T Consensus         4 ~~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~   44 (297)
T 1d7o_A            4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVP   44 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHH
T ss_pred             cccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccc
Confidence            3577899999998   6999999999999999999998864

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=96.88  E-value=0.0012  Score=66.27  Aligned_cols=71  Identities=15%  Similarity=0.165  Sum_probs=53.2

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH---HHHHHHHHHHCCcccchhc-ccc-c--CCCCeeEEEecCCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY---DRARELAETVGGHALSLAD-LEN-F--NPEDGMILANTTSIG  452 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~---~~a~~la~~~~~~~~~~~~-l~~-~--~~~~~DilInaT~~g  452 (465)
                      ++++|+|+|+|++|.+++..++..|++|++++|+.   ++. +++++++...++ .+ +.+ .  ....+|++||+++..
T Consensus       180 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~-~~~~~~ga~~v~-~~~~~~~~~~~~~~~d~vid~~g~~  257 (366)
T 2cdc_A          180 NCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQ-TVIEETKTNYYN-SSNGYDKLKDSVGKFDVIIDATGAD  257 (366)
T ss_dssp             TTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHH-HHHHHHTCEEEE-CTTCSHHHHHHHCCEEEEEECCCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHH-HHHHHhCCceec-hHHHHHHHHHhCCCCCEEEECCCCh
Confidence            38999999999999999999999999999999998   776 556677754332 21 100 0  014699999999753

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.88  E-value=0.00014  Score=68.42  Aligned_cols=71  Identities=13%  Similarity=0.076  Sum_probs=47.8

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHCCcc--cchh---cccccCCCCeeEEEecCCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKG-ARVVIANRTYDRARELAETVGGHA--LSLA---DLENFNPEDGMILANTTSI  451 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G-~~v~i~~R~~~~a~~la~~~~~~~--~~~~---~l~~~~~~~~DilInaT~~  451 (465)
                      ...|+|+|+|+ |++|++++..|.+.| ++|+++.|+++++.++... +...  .++.   ++.+ .+.++|+|||+++.
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~-~~~~~~~Dl~d~~~~~~-~~~~~D~vv~~a~~   98 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPT-NSQIIMGDVLNHAALKQ-AMQGQDIVYANLTG   98 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCT-TEEEEECCTTCHHHHHH-HHTTCSEEEEECCS
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccC-CcEEEEecCCCHHHHHH-HhcCCCEEEEcCCC
Confidence            34578999996 799999999999999 7999999998765433210 0011  1222   2222 34567888887753

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=96.87  E-value=0.001  Score=83.01  Aligned_cols=74  Identities=18%  Similarity=0.198  Sum_probs=56.4

Q ss_pred             ccCCcEEEEEccc-h-hHHHHHHHHHHCCCeEEEEECCHHH-----HHHHHHHHCC---cc----cchh---ccc-----
Q 012352          378 ALAGKLFVVIGAG-G-AGKALAYGAKAKGARVVIANRTYDR-----ARELAETVGG---HA----LSLA---DLE-----  435 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g-~g~ai~~~L~~~G~~v~i~~R~~~~-----a~~la~~~~~---~~----~~~~---~l~-----  435 (465)
                      .+++|.+||+|++ | +|++++..|++.|++|++++|+.++     +++++++++.   ..    .++.   ++.     
T Consensus      2133 ~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~ 2212 (3089)
T 3zen_D         2133 XXXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEW 2212 (3089)
T ss_dssp             CCCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHH
Confidence            4889999999996 8 9999999999999999999998776     6777777752   11    1221   111     


Q ss_pred             --c-c--CCCCeeEEEecCCC
Q 012352          436 --N-F--NPEDGMILANTTSI  451 (465)
Q Consensus       436 --~-~--~~~~~DilInaT~~  451 (465)
                        + .  ..+..|+|||++++
T Consensus      2213 i~~~~~~~fG~IDILVNNAGi 2233 (3089)
T 3zen_D         2213 VGTEQTESLGPQSIHLKDAQT 2233 (3089)
T ss_dssp             HTSCCEEEESSSEEEECCCCC
T ss_pred             HHhhhhhhcCCCCEEEECCCc
Confidence              1 0  24678999999987

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.87  E-value=0.0012  Score=66.66  Aligned_cols=72  Identities=13%  Similarity=0.159  Sum_probs=50.8

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc-cchhcccccCCCCeeEEEecCCCC
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA-LSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~-~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ++..++.|||.|.+|..++..|++.|++|++++|++++++.+.+. +... .+.+++-+ .....|+||.++|.+
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~~~s~~e~~~-~a~~~DvVi~~vp~~   92 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALERE-GIAGARSIEEFCA-KLVKPRVVWLMVPAA   92 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT-TCBCCSSHHHHHH-HSCSSCEEEECSCGG
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHC-CCEEeCCHHHHHh-cCCCCCEEEEeCCHH
Confidence            456789999999999999999999999999999999998887643 2211 12222211 122347777777654

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=96.86  E-value=0.0015  Score=65.72  Aligned_cols=71  Identities=24%  Similarity=0.265  Sum_probs=49.8

Q ss_pred             ccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCccc-chhcccccCCCCeeEEEecCCCC
Q 012352          376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL-SLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       376 ~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~-~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      +..+.+|++.|+|.|.+|++++..|...|++|+.++|+...  +.+...+.... +++++    +.++|+|+.++|..
T Consensus       155 ~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~~~~~g~~~~~~l~el----l~~aDiV~l~~Plt  226 (352)
T 3gg9_A          155 GRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK--ERARADGFAVAESKDAL----FEQSDVLSVHLRLN  226 (352)
T ss_dssp             BCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH--HHHHHTTCEECSSHHHH----HHHCSEEEECCCCS
T ss_pred             CccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH--HHHHhcCceEeCCHHHH----HhhCCEEEEeccCc
Confidence            45688999999999999999999999999999999998633  22333343222 23222    23456666666643

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=96.85  E-value=0.0012  Score=64.97  Aligned_cols=37  Identities=32%  Similarity=0.386  Sum_probs=33.7

Q ss_pred             ccCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEECCH
Q 012352          378 ALAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       378 ~l~~k~vlV~Ga---Gg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      ++++|+++|+|+   ||+|++++..|++.|++|++++|++
T Consensus         6 ~l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~   45 (315)
T 2o2s_A            6 DLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPP   45 (315)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHH
T ss_pred             cCCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEeccc
Confidence            477899999996   7999999999999999999999864

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.85  E-value=0.00015  Score=69.80  Aligned_cols=65  Identities=20%  Similarity=0.183  Sum_probs=45.7

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchh---cccccCCCC-eeEEEecCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLA---DLENFNPED-GMILANTTSI  451 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~---~l~~~~~~~-~DilInaT~~  451 (465)
                      +++|||+|+|.+|+.++..|.+.|++|+++.|+.++..     -+...  .++.   .+.+ .+.+ +|+||++++.
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----~~~~~~~~Dl~d~~~~~~-~~~~~~d~vih~a~~   73 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMP-----AGVQTLIADVTRPDTLAS-IVHLRPEILVYCVAA   73 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCC-----TTCCEEECCTTCGGGCTT-GGGGCCSEEEECHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccc-----cCCceEEccCCChHHHHH-hhcCCCCEEEEeCCC
Confidence            57899999999999999999999999999999866421     01111  2332   2222 2233 8999998754

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=96.84  E-value=0.0014  Score=68.84  Aligned_cols=73  Identities=18%  Similarity=0.247  Sum_probs=53.6

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc-cchhcccccCCCCeeEEEecCCCC
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA-LSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~-~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      +..+++.|+|+|.+|.+++..|++.|++|+++||++++++++.++.+   ... .+.+++-+ .++.+|+||-++|.+
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~-~l~~aDvVil~Vp~~   89 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVE-SLETPRRILLMVKAG   89 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHH-TBCSSCEEEECSCSS
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHh-CCCCCCEEEEECCCH
Confidence            44678999999999999999999999999999999999999887642   111 12222211 223478888888765

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.84  E-value=0.001  Score=64.39  Aligned_cols=71  Identities=11%  Similarity=0.157  Sum_probs=50.3

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCH-------HHHHHHHHH--HCCcc--cchh---cccccCCCCeeEE
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY-------DRARELAET--VGGHA--LSLA---DLENFNPEDGMIL  445 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~-------~~a~~la~~--~~~~~--~~~~---~l~~~~~~~~Dil  445 (465)
                      +++|+|+|+ |++|++++.+|.+.|++|+++.|+.       ++++.+.+.  .+...  .++.   .+.+ .+.++|+|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~-~~~~~d~v   80 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVK-AIKQVDIV   80 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHH-HHTTCSEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHH-HHhCCCEE
Confidence            467999998 8999999999999999999999986       666554321  12222  2332   2333 34578999


Q ss_pred             EecCCCC
Q 012352          446 ANTTSIG  452 (465)
Q Consensus       446 InaT~~g  452 (465)
                      ||+++..
T Consensus        81 i~~a~~~   87 (307)
T 2gas_A           81 ICAAGRL   87 (307)
T ss_dssp             EECSSSS
T ss_pred             EECCccc
Confidence            9998753

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.84  E-value=0.00024  Score=66.35  Aligned_cols=68  Identities=22%  Similarity=0.332  Sum_probs=46.3

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchh---ccccc-----CCCCeeEEEecCCC
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA---DLENF-----NPEDGMILANTTSI  451 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~---~l~~~-----~~~~~DilInaT~~  451 (465)
                      +|+++|+|+ ||+|++++..|++.|++|++++|+.+ .+++    .....|+.   ++.+.     ..+..|+|||+++.
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~~~~----~~~~~D~~~~~~~~~~~~~~~~~~~~d~li~~ag~   76 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-GEDL----IYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAGV   76 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-SSSS----EEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-ccce----EEEeCCCCCHHHHHHHHHHHHhhCCceEEEEcccc
Confidence            578999998 59999999999999999999999865 2111    00011221   11110     12468999999987


Q ss_pred             CC
Q 012352          452 GM  453 (465)
Q Consensus       452 gm  453 (465)
                      ..
T Consensus        77 ~~   78 (242)
T 1uay_A           77 GL   78 (242)
T ss_dssp             CC
T ss_pred             cC
Confidence            64

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.82  E-value=0.00083  Score=67.63  Aligned_cols=72  Identities=21%  Similarity=0.255  Sum_probs=52.8

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ..+.++++.|+|.|.+|++++..|...|++|+.++|+....+. +.+.+....  +++.+ .+.++|+|+.++|..
T Consensus       160 ~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-~~~~g~~~~--~~l~e-ll~~aDvV~l~~Plt  231 (351)
T 3jtm_A          160 YDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPEL-EKETGAKFV--EDLNE-MLPKCDVIVINMPLT  231 (351)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHH-HHHHCCEEC--SCHHH-HGGGCSEEEECSCCC
T ss_pred             ccccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHH-HHhCCCeEc--CCHHH-HHhcCCEEEECCCCC
Confidence            5688999999999999999999999999999999998644332 334443322  22223 234678888888864

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=96.82  E-value=0.014  Score=53.84  Aligned_cols=122  Identities=17%  Similarity=0.159  Sum_probs=77.1

Q ss_pred             CcEEEEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHH
Q 012352           23 PTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVD  102 (465)
Q Consensus        23 ~~~icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~  102 (465)
                      ...|+.+|.+.+.+++.+.++.+...|+|++|+|.-..   +..+.++.+.+..+.|+++-.     |+.  .+. +   
T Consensus         6 ~~~i~~~i~~~d~~~~~~~~~~~~~~G~~~i~l~~~~~---~~~~~i~~i~~~~~~~l~vg~-----g~~--~~~-~---   71 (212)
T 2v82_A            6 KLPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNSP---QWEQSIPAIVDAYGDKALIGA-----GTV--LKP-E---   71 (212)
T ss_dssp             SSCEEEECTTCCHHHHHHHHHHHHHHTCCEEEEETTST---THHHHHHHHHHHHTTTSEEEE-----ECC--CSH-H---
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCh---hHHHHHHHHHHhCCCCeEEEe-----ccc--cCH-H---
Confidence            45567789999999999999998889999999985531   223456656555567777621     221  122 2   


Q ss_pred             HHHHHHHhCCcEEEEeeccccchhHHHHhcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 012352          103 VLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (465)
Q Consensus       103 ~l~~~~~~~~~~iDiEl~~~~~~~~~l~~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKi  172 (465)
                      .++.+.+.|+++|=+.- ...++.+...   ..+.+++++.|    |  .+|+    .+..+.|+|++++
T Consensus        72 ~i~~a~~~Gad~V~~~~-~~~~~~~~~~---~~g~~~~~g~~----t--~~e~----~~a~~~G~d~v~v  127 (212)
T 2v82_A           72 QVDALARMGCQLIVTPN-IHSEVIRRAV---GYGMTVCPGCA----T--ATEA----FTALEAGAQALKI  127 (212)
T ss_dssp             HHHHHHHTTCCEEECSS-CCHHHHHHHH---HTTCEEECEEC----S--HHHH----HHHHHTTCSEEEE
T ss_pred             HHHHHHHcCCCEEEeCC-CCHHHHHHHH---HcCCCEEeecC----C--HHHH----HHHHHCCCCEEEE
Confidence            35567788999985322 1223333222   23567777755    2  3343    4456789999996

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.81  E-value=0.0024  Score=63.20  Aligned_cols=71  Identities=8%  Similarity=0.102  Sum_probs=51.3

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      .+++.|+|+|.+|.+++..|.+.|+  +|++++|++++.+.+. +.+.......++.+..+.++|+||.|+|..
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~-~~G~~~~~~~~~~~~~~~~aDvVilavp~~  105 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-DLGIIDEGTTSIAKVEDFSPDFVMLSSPVR  105 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-HTTSCSEEESCTTGGGGGCCSEEEECSCGG
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HCCCcchhcCCHHHHhhccCCEEEEeCCHH
Confidence            4789999999999999999999998  9999999998877654 344210001122110134689999998865

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=96.81  E-value=0.00023  Score=68.17  Aligned_cols=67  Identities=15%  Similarity=0.091  Sum_probs=47.7

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchh---cccccCCCCeeEEEecCCCC
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLA---DLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~---~l~~~~~~~~DilInaT~~g  452 (465)
                      +|+|+|+|+ |++|++++..|++.|++|++++|+..+..    .-+...  .++.   ++.+ .+.++|+|||+++..
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~----~~~~~~~~~Dl~d~~~~~~-~~~~~D~vi~~Ag~~   75 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA----GPNEECVQCDLADANAVNA-MVAGCDGIVHLGGIS   75 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC----CTTEEEEECCTTCHHHHHH-HHTTCSEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc----CCCCEEEEcCCCCHHHHHH-HHcCCCEEEECCCCc
Confidence            578999997 69999999999999999999999875532    000011  2332   2333 345789999999874

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=96.81  E-value=0.0027  Score=63.04  Aligned_cols=72  Identities=24%  Similarity=0.232  Sum_probs=53.9

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchh---cc----cccCCCCeeEEEecCC
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLA---DL----ENFNPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~---~l----~~~~~~~~DilInaT~  450 (465)
                      .+++|+|+|+ |++|++++..++..|++|+++.|++++.+.+.++++.. .+++.   ++    .+.....+|++||+++
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g  234 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVG  234 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEECCC
Confidence            4789999997 89999999999999999999999998877766567643 23322   11    1111246999999987


Q ss_pred             C
Q 012352          451 I  451 (465)
Q Consensus       451 ~  451 (465)
                      .
T Consensus       235 ~  235 (345)
T 2j3h_A          235 G  235 (345)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=96.80  E-value=0.00031  Score=70.02  Aligned_cols=40  Identities=35%  Similarity=0.479  Sum_probs=36.8

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHH
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDR  416 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~  416 (465)
                      ..+.+|++.|+|.|.+|++++..|...|++|+.++|+.+.
T Consensus       133 ~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  172 (324)
T 3evt_A          133 STLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHP  172 (324)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCC
T ss_pred             ccccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcch
Confidence            5688999999999999999999999999999999998654

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=96.80  E-value=0.0017  Score=63.87  Aligned_cols=42  Identities=19%  Similarity=0.218  Sum_probs=39.4

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET  423 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~  423 (465)
                      |+|-+||.|-||..++..|.+.|++|++|||++++++.+.+.
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~   45 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAA   45 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHc
Confidence            589999999999999999999999999999999999998754

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=96.80  E-value=0.00024  Score=66.83  Aligned_cols=69  Identities=14%  Similarity=0.118  Sum_probs=45.5

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhccccc--C-CCCeeEEEecCCCCC
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENF--N-PEDGMILANTTSIGM  453 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~--~-~~~~DilInaT~~gm  453 (465)
                      |++||+|+ |++|++++..|++.|++|++++|+.++.+.   .+.....+.+++.+.  . .++.|+|||+++...
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~~~   74 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA---DLSTPGGRETAVAAVLDRCGGVLDGLVCCAGVGV   74 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC---CTTSHHHHHHHHHHHHHHHTTCCSEEEECCCCCT
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc---cccCCcccHHHHHHHHHHcCCCccEEEECCCCCC
Confidence            57999998 699999999999999999999998654221   010000011111110  1 146899999998653

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=96.76  E-value=0.00055  Score=66.52  Aligned_cols=42  Identities=21%  Similarity=0.264  Sum_probs=38.2

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET  423 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~  423 (465)
                      +++.|+|+|.+|.+++..|++.|++|++++|++++++.+.+.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~   43 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVAL   43 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHH
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC
Confidence            468999999999999999999999999999999998887654

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=96.76  E-value=0.0029  Score=59.56  Aligned_cols=70  Identities=20%  Similarity=0.103  Sum_probs=46.4

Q ss_pred             CCcEEEEEccc-hhHHHHHHHHHH-CCCeEEEEECCHH-HHHHHHHHHCCcccchh---ccc----ccCCCCeeEEEecC
Q 012352          380 AGKLFVVIGAG-GAGKALAYGAKA-KGARVVIANRTYD-RARELAETVGGHALSLA---DLE----NFNPEDGMILANTT  449 (465)
Q Consensus       380 ~~k~vlV~GaG-g~g~ai~~~L~~-~G~~v~i~~R~~~-~a~~la~~~~~~~~~~~---~l~----~~~~~~~DilInaT  449 (465)
                      ++|++||+|++ |+|++++..|++ .|++|++++|+.+ ..+.+    .....|+.   ++.    .......|+|||++
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~~~~~----~~~~~Dv~~~~~v~~~~~~~~~~~id~lv~nA   78 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSAENL----KFIKADLTKQQDITNVLDIIKNVSFDGIFLNA   78 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCCCTTE----EEEECCTTCHHHHHHHHHHTTTCCEEEEEECC
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccccccc----eEEecCcCCHHHHHHHHHHHHhCCCCEEEECC
Confidence            47899999985 999999999998 6779999999765 21111    00011221   111    11234789999999


Q ss_pred             CCCC
Q 012352          450 SIGM  453 (465)
Q Consensus       450 ~~gm  453 (465)
                      ++..
T Consensus        79 g~~~   82 (244)
T 4e4y_A           79 GILI   82 (244)
T ss_dssp             CCCC
T ss_pred             ccCC
Confidence            8764

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.75  E-value=0.0011  Score=65.96  Aligned_cols=71  Identities=18%  Similarity=0.205  Sum_probs=50.6

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ..+.++++.|+|.|.+|++++..|+..|++|++++|+.++.+.. .+++....++++    .+.++|+||.++|..
T Consensus       151 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~~~l~e----~l~~aDvVi~~vp~~  221 (330)
T 2gcg_A          151 YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEA-AEFQAEFVSTPE----LAAQSDFIVVACSLT  221 (330)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHH-HTTTCEECCHHH----HHHHCSEEEECCCCC
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHH-HhcCceeCCHHH----HHhhCCEEEEeCCCC
Confidence            46889999999999999999999999999999999987654433 223322222222    123467777777654

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=96.75  E-value=0.0015  Score=65.55  Aligned_cols=71  Identities=18%  Similarity=0.254  Sum_probs=50.2

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHH-HCCCeEEEEECCHHHHHHHHHHHCCccc-chhcccccCCCCeeEEEecCCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAK-AKGARVVIANRTYDRARELAETVGGHAL-SLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~-~~G~~v~i~~R~~~~a~~la~~~~~~~~-~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ..+.++++.|+|.|.+|++++..|+ ..|++|++++|+.++.+. +.+++.... +++++    +.++|+||.++|..
T Consensus       159 ~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~-~~~~g~~~~~~l~el----l~~aDvVil~vp~~  231 (348)
T 2w2k_A          159 HNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAET-EKALGAERVDSLEEL----ARRSDCVSVSVPYM  231 (348)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHH-HHHHTCEECSSHHHH----HHHCSEEEECCCCS
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhh-HhhcCcEEeCCHHHH----hccCCEEEEeCCCC
Confidence            4688999999999999999999999 999999999998755433 233343222 22221    23467777776654

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.75  E-value=0.00031  Score=69.29  Aligned_cols=76  Identities=17%  Similarity=0.201  Sum_probs=51.1

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-cc--cchhc---ccccCCC--CeeEEEe
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-HA--LSLAD---LENFNPE--DGMILAN  447 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-~~--~~~~~---l~~~~~~--~~DilIn  447 (465)
                      ..+++++|||+|+ |++|++++..|.+.|++|+++.|+.....++.+.+.. ..  .++.+   +.+ .+.  ++|+|||
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~-~~~~~~~D~vih   94 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLER-AFDSFKPTHVVH   94 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHH-HHHHHCCSEEEE
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHH-HHhhcCCCEEEE
Confidence            5678899999998 7999999999999999999999965432211111111 11  12222   222 233  6899999


Q ss_pred             cCCCCC
Q 012352          448 TTSIGM  453 (465)
Q Consensus       448 aT~~gm  453 (465)
                      +++...
T Consensus        95 ~A~~~~  100 (330)
T 2pzm_A           95 SAAAYK  100 (330)
T ss_dssp             CCCCCS
T ss_pred             CCccCC
Confidence            998653

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=96.74  E-value=0.0018  Score=65.25  Aligned_cols=36  Identities=19%  Similarity=0.451  Sum_probs=32.8

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCH
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY  414 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~  414 (465)
                      +++++|+|+|+||+|..++..|+..|+ ++++++++.
T Consensus       116 L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          116 LKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            456899999999999999999999999 999999863

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=96.72  E-value=0.0019  Score=65.40  Aligned_cols=71  Identities=23%  Similarity=0.265  Sum_probs=50.8

Q ss_pred             ccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       376 ~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      +..+.||++.|+|.|.+|++++..+..+|++|+.++|+...  +.+...+....+++++    +.++|+|+.++|..
T Consensus       171 ~~~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~--~~~~~~g~~~~~l~el----l~~aDvV~l~~Plt  241 (365)
T 4hy3_A          171 ARLIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPR--SMLEENGVEPASLEDV----LTKSDFIFVVAAVT  241 (365)
T ss_dssp             CCCSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCH--HHHHHTTCEECCHHHH----HHSCSEEEECSCSS
T ss_pred             ccccCCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCH--HHHhhcCeeeCCHHHH----HhcCCEEEEcCcCC
Confidence            45688999999999999999999999999999999998532  2223334332233322    23567777777755

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=96.71  E-value=0.001  Score=66.49  Aligned_cols=72  Identities=14%  Similarity=0.170  Sum_probs=50.3

Q ss_pred             ccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       376 ~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      +..+.++++.|+|.|.+|++++..|...|++|+.++|+..+.+ .+..++....+++++    +.++|+|+.++|..
T Consensus       140 ~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~~l~el----l~~aDvV~l~~P~t  211 (330)
T 4e5n_A          140 GTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQ-TEQRLGLRQVACSEL----FASSDFILLALPLN  211 (330)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHH-HHHHHTEEECCHHHH----HHHCSEEEECCCCS
T ss_pred             CCccCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHh-HHHhcCceeCCHHHH----HhhCCEEEEcCCCC
Confidence            3568899999999999999999999999999999999863322 223334322233222    23467777777653

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=96.71  E-value=0.0025  Score=63.66  Aligned_cols=69  Identities=25%  Similarity=0.261  Sum_probs=52.6

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCc-ccchhc------ccccCCCCeeEEEecCC
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGH-ALSLAD------LENFNPEDGMILANTTS  450 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~-~~~~~~------l~~~~~~~~DilInaT~  450 (465)
                      ++|+|+|+ ||+|++++..++..|+ +|+++.|+.++.+.+.++++.. .++..+      +.+...+.+|++||+++
T Consensus       162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~d~vi~~~G  239 (357)
T 2zb4_A          162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGVDVYFDNVG  239 (357)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHCTTCEEEEEESCC
T ss_pred             cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHHHHHhcCCCCCEEEECCC
Confidence            89999998 8999999999999999 9999999998887776657643 233221      11111126999999997

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=96.71  E-value=0.00095  Score=64.97  Aligned_cols=66  Identities=17%  Similarity=0.177  Sum_probs=48.6

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      .++.|+|+|.+|++++..|.+.|++|++++|++++++.+.+. +...  ..+..+ .+.++|+||.++|.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~~--~~~~~~-~~~~~D~vi~~vp~   70 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQ-GAQA--CENNQK-VAAASDIIFTSLPN   70 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTT-TCEE--CSSHHH-HHHHCSEEEECCSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHC-CCee--cCCHHH-HHhCCCEEEEECCC
Confidence            579999999999999999999999999999999998887653 2211  111111 12346788888764

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=96.71  E-value=0.0016  Score=65.44  Aligned_cols=71  Identities=21%  Similarity=0.193  Sum_probs=50.4

Q ss_pred             ccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       376 ~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      +..+.+|++.|+|.|.+|++++..|...|++|+.++|+..+.+...   +....  +++.+ .+.++|+|+.++|..
T Consensus       168 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~---g~~~~--~~l~e-ll~~sDvV~l~~Plt  238 (345)
T 4g2n_A          168 GMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEE---GAIYH--DTLDS-LLGASDIFLIAAPGR  238 (345)
T ss_dssp             BCCCTTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHT---TCEEC--SSHHH-HHHTCSEEEECSCCC
T ss_pred             ccccCCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhc---CCeEe--CCHHH-HHhhCCEEEEecCCC
Confidence            4578999999999999999999999999999999999864322211   22222  12222 234567888877754

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=96.70  E-value=0.0027  Score=75.80  Aligned_cols=76  Identities=20%  Similarity=0.325  Sum_probs=55.1

Q ss_pred             cccCCcEEEEEccc-h-hHHHHHHHHHHCCCeEEEE-ECCHHHHHHHHHHH-------CCcc----cchhc---c-----
Q 012352          377 SALAGKLFVVIGAG-G-AGKALAYGAKAKGARVVIA-NRTYDRARELAETV-------GGHA----LSLAD---L-----  434 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g-~g~ai~~~L~~~G~~v~i~-~R~~~~a~~la~~~-------~~~~----~~~~~---l-----  434 (465)
                      ..+++|.+||+|++ | +|++++..|++.|++|+++ .|+.++++++++++       +...    .++.+   +     
T Consensus       671 m~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv~  750 (1887)
T 2uv8_A          671 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIE  750 (1887)
T ss_dssp             BCCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHH
Confidence            56889999999986 7 9999999999999999998 68877776655443       2221    12211   1     


Q ss_pred             --cccC-----CC-CeeEEEecCCCCC
Q 012352          435 --ENFN-----PE-DGMILANTTSIGM  453 (465)
Q Consensus       435 --~~~~-----~~-~~DilInaT~~gm  453 (465)
                        .+ .     .+ ..|+|||++++..
T Consensus       751 ~i~~-~~~~~G~G~~LDiLVNNAGi~~  776 (1887)
T 2uv8_A          751 FIYD-TEKNGGLGWDLDAIIPFAAIPE  776 (1887)
T ss_dssp             HHHS-CTTTTSCCCCCSEEEECCCCCC
T ss_pred             HHHH-hccccccCCCCeEEEECCCcCC
Confidence              11 2     34 7999999999764

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.70  E-value=0.0032  Score=62.73  Aligned_cols=70  Identities=24%  Similarity=0.225  Sum_probs=53.5

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      .+.+|||+|+|++|.+++..++..|++|+++.+++++.+ ++.+++...+- .+... ....+|++|++++..
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~-~~~~lGa~~v~-~~~~~-~~~~~D~vid~~g~~  245 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQ-DALSMGVKHFY-TDPKQ-CKEELDFIISTIPTH  245 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHH-HHHHTTCSEEE-SSGGG-CCSCEEEEEECCCSC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHH-HHHhcCCCeec-CCHHH-HhcCCCEEEECCCcH
Confidence            478999999999999999999999999999999988865 55678754321 22222 122799999998754

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=96.68  E-value=0.0011  Score=64.39  Aligned_cols=66  Identities=15%  Similarity=0.210  Sum_probs=48.6

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      .++.|+|+|.+|.+++..|...|++|++++|++++++.+.+. +...  ..+..+ .+.++|+||.|+|.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~~--~~~~~~-~~~~~D~vi~~v~~   71 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAA-GAET--ASTAKA-IAEQCDVIITMLPN   71 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT-TCEE--CSSHHH-HHHHCSEEEECCSS
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHC-CCee--cCCHHH-HHhCCCEEEEECCC
Confidence            379999999999999999999999999999999998887654 3211  111111 12346788888763

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=96.67  E-value=0.00086  Score=66.05  Aligned_cols=43  Identities=30%  Similarity=0.366  Sum_probs=39.2

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAE  422 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~  422 (465)
                      +.+++.|+|+|.+|.+++..|++.|++|++++|++++++.+.+
T Consensus        20 ~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   62 (310)
T 3doj_A           20 HMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVE   62 (310)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHH
T ss_pred             cCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            3468999999999999999999999999999999999888764

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.67  E-value=0.0027  Score=62.67  Aligned_cols=73  Identities=14%  Similarity=0.091  Sum_probs=50.3

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHH----HHHHHHHHH-----CC-cc--cchh---cccccCCCCe
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYD----RARELAETV-----GG-HA--LSLA---DLENFNPEDG  442 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~----~a~~la~~~-----~~-~~--~~~~---~l~~~~~~~~  442 (465)
                      +.+++|||+|+ |.+|++++..|.+.|++|+++.|+..    ....+...+     .. ..  .++.   ++.+ .+.++
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~~~~~  101 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQ-VMKGV  101 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHH-HTTTC
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHH-HhcCC
Confidence            56789999997 78999999999999999999999543    333332211     11 11  2332   2333 35579


Q ss_pred             eEEEecCCCC
Q 012352          443 MILANTTSIG  452 (465)
Q Consensus       443 DilInaT~~g  452 (465)
                      |+||++++..
T Consensus       102 d~Vih~A~~~  111 (351)
T 3ruf_A          102 DHVLHQAALG  111 (351)
T ss_dssp             SEEEECCCCC
T ss_pred             CEEEECCccC
Confidence            9999999864

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=96.67  E-value=0.00054  Score=67.82  Aligned_cols=40  Identities=38%  Similarity=0.411  Sum_probs=36.9

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHH
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDR  416 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~  416 (465)
                      ..+.++++.|+|.|.+|++++..|...|++|++++|+.++
T Consensus       140 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~  179 (311)
T 2cuk_A          140 LDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKP  179 (311)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcc
Confidence            4688999999999999999999999999999999998754

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=96.67  E-value=0.0018  Score=67.68  Aligned_cols=68  Identities=28%  Similarity=0.337  Sum_probs=50.4

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTT  449 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT  449 (465)
                      ..+.+|++.|+|.|.+|++++..|..+|++|++++|++.++.... ..+....+   +.+ .+.++|+||.++
T Consensus       253 ~~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~-~~g~~~~~---l~e-ll~~aDiVi~~~  320 (479)
T 1v8b_A          253 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAV-MEGFNVVT---LDE-IVDKGDFFITCT  320 (479)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH-TTTCEECC---HHH-HTTTCSEEEECC
T ss_pred             cccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHH-HcCCEecC---HHH-HHhcCCEEEECC
Confidence            468899999999999999999999999999999999998764322 22222222   223 245677777775

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=96.66  E-value=0.0031  Score=66.20  Aligned_cols=68  Identities=28%  Similarity=0.325  Sum_probs=50.0

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTT  449 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT  449 (465)
                      ..+.+|++.|+|.|.+|+.++..|..+|++|++++|++.++.+.. ..+....++   .+ .+.++|+||.++
T Consensus       273 ~~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~-~~G~~~~~l---~e-ll~~aDiVi~~~  340 (494)
T 3d64_A          273 VMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAA-MEGYRVVTM---EY-AADKADIFVTAT  340 (494)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHH-TTTCEECCH---HH-HTTTCSEEEECS
T ss_pred             cccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHH-HcCCEeCCH---HH-HHhcCCEEEECC
Confidence            458899999999999999999999999999999999988753322 222222222   22 244577777776

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=96.65  E-value=0.0043  Score=73.93  Aligned_cols=76  Identities=22%  Similarity=0.324  Sum_probs=53.9

Q ss_pred             cccCCcEEEEEccc-h-hHHHHHHHHHHCCCeEEEEE-CCHHHHHHHH----HHHC---Ccc----cchh---cc-----
Q 012352          377 SALAGKLFVVIGAG-G-AGKALAYGAKAKGARVVIAN-RTYDRARELA----ETVG---GHA----LSLA---DL-----  434 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g-~g~ai~~~L~~~G~~v~i~~-R~~~~a~~la----~~~~---~~~----~~~~---~l-----  434 (465)
                      ..+++|+|||+|++ | +|++++..|++.|++|++++ |+.++..+.+    ++++   ...    .++.   ++     
T Consensus       648 m~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~  727 (1878)
T 2uv9_A          648 LTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVN  727 (1878)
T ss_dssp             BCCTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHH
Confidence            56889999999985 7 99999999999999999984 7666655443    4442   221    1221   11     


Q ss_pred             --cccC---CC-CeeEEEecCCCCC
Q 012352          435 --ENFN---PE-DGMILANTTSIGM  453 (465)
Q Consensus       435 --~~~~---~~-~~DilInaT~~gm  453 (465)
                        .+ .   .+ ..|+|||++++..
T Consensus       728 ~i~~-~~~~~G~~IDiLVnNAGi~~  751 (1878)
T 2uv9_A          728 YIYD-TKNGLGWDLDYVVPFAAIPE  751 (1878)
T ss_dssp             HHHC-SSSSCCCCCSEEEECCCCCC
T ss_pred             HHHH-hhcccCCCCcEEEeCccccc
Confidence              11 2   45 7899999999764

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=96.64  E-value=0.0026  Score=63.75  Aligned_cols=72  Identities=19%  Similarity=0.244  Sum_probs=54.9

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchhc---ccccCCCCeeEEEecCCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLAD---LENFNPEDGMILANTTSIG  452 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~~---l~~~~~~~~DilInaT~~g  452 (465)
                      .+.+|+|+|+|++|..++..++..|++|+++.+++++.+.+.++++.. .++..+   +.+ ....+|++|++++..
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~-~~~g~D~vid~~g~~  255 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSE-LADSLDYVIDTVPVH  255 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHH-STTTEEEEEECCCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHH-hcCCCCEEEECCCCh
Confidence            478999999999999999999999999999999988876665577753 233322   222 234799999999753

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=96.63  E-value=0.0021  Score=63.68  Aligned_cols=74  Identities=15%  Similarity=0.137  Sum_probs=52.1

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCH----HHHHHHHHHHC----C--cc--cchhc---ccccCCCC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY----DRARELAETVG----G--HA--LSLAD---LENFNPED  441 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~----~~a~~la~~~~----~--~~--~~~~~---l~~~~~~~  441 (465)
                      .+.+++|||+|+ |++|++++..|.+.|++|+++.|+.    ++...+.+.+.    .  ..  .++.+   +.+ .+.+
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~~~~  102 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNN-ACAG  102 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHH-HHTT
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHH-HhcC
Confidence            356789999998 7999999999999999999999965    34555544331    1  11  13322   223 3457


Q ss_pred             eeEEEecCCCC
Q 012352          442 GMILANTTSIG  452 (465)
Q Consensus       442 ~DilInaT~~g  452 (465)
                      +|+|||+++..
T Consensus       103 ~d~vih~A~~~  113 (352)
T 1sb8_A          103 VDYVLHQAALG  113 (352)
T ss_dssp             CSEEEECCSCC
T ss_pred             CCEEEECCccc
Confidence            89999998764

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=96.62  E-value=0.003  Score=66.12  Aligned_cols=70  Identities=24%  Similarity=0.259  Sum_probs=53.0

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc-cchhcccccCCCCeeEEEecCCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA-LSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~-~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      .++.|+|+|.+|.+++..|++.|++|++++|++++++.+.++++   ... .+.+++-+ .++++|+||-++|.+
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~-~l~~aDvVilavp~~   79 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVG-SLEKPRRIMLMVQAG   79 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHH-TBCSSCEEEECCCTT
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHh-hccCCCEEEEEccCc
Confidence            57999999999999999999999999999999999999988752   111 12222212 223478888888765

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=96.62  E-value=0.0032  Score=61.95  Aligned_cols=70  Identities=20%  Similarity=0.255  Sum_probs=53.4

Q ss_pred             cEEEEEccchhHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHCC-------cc-cchhcccccCCCCeeEEEecCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKG--ARVVIANRTYDRARELAETVGG-------HA-LSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G--~~v~i~~R~~~~a~~la~~~~~-------~~-~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      +++.|+|+|.+|.+++..|+..|  .+|++++|++++++.++..++.       .. +...+. + .+.++|+||.+++.
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~-~~~~aDvViiav~~   79 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-A-ALADADVVISTLGN   79 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-G-GGTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-H-HhCCCCEEEEecCC
Confidence            37999999999999999999989  5899999999999888765531       00 101233 2 35679999999987


Q ss_pred             CC
Q 012352          452 GM  453 (465)
Q Consensus       452 gm  453 (465)
                      ..
T Consensus        80 ~~   81 (309)
T 1hyh_A           80 IK   81 (309)
T ss_dssp             GG
T ss_pred             cc
Confidence            54

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.61  E-value=0.0025  Score=61.73  Aligned_cols=71  Identities=18%  Similarity=0.231  Sum_probs=50.2

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECC-----HHHHHHHHHHH--CCcc--cchh---cccccCCCCeeEEEe
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT-----YDRARELAETV--GGHA--LSLA---DLENFNPEDGMILAN  447 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~-----~~~a~~la~~~--~~~~--~~~~---~l~~~~~~~~DilIn  447 (465)
                      .++++|+|+ |.+|++++.+|.+.|++|+++.|+     +++++.+.+.-  +...  .++.   .+.+ .+.++|+||+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~-~~~~~d~vi~   82 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVD-ALKQVDVVIS   82 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHH-HHTTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHH-HHhCCCEEEE
Confidence            367999997 899999999999999999999998     55655543211  2222  2332   2333 3457899999


Q ss_pred             cCCCC
Q 012352          448 TTSIG  452 (465)
Q Consensus       448 aT~~g  452 (465)
                      +++..
T Consensus        83 ~a~~~   87 (313)
T 1qyd_A           83 ALAGG   87 (313)
T ss_dssp             CCCCS
T ss_pred             CCccc
Confidence            98764

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=96.61  E-value=0.0045  Score=61.89  Aligned_cols=71  Identities=23%  Similarity=0.339  Sum_probs=52.8

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchhc------cccc-CCCCeeEEEecCC
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLAD------LENF-NPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~~------l~~~-~~~~~DilInaT~  450 (465)
                      .+++|+|+|+ ||+|.+++..++..|++|+++.|++++.+ ++++++.. .++..+      +.+. ....+|++||+++
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~-~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~G  248 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQK-IVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLA  248 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCH
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHH-HHHHcCCCEEEeCCCchHHHHHHHHcCCCCcEEEEECCC
Confidence            4789999998 89999999999999999999999998876 55667643 222211      1110 1236999999986


Q ss_pred             C
Q 012352          451 I  451 (465)
Q Consensus       451 ~  451 (465)
                      .
T Consensus       249 ~  249 (351)
T 1yb5_A          249 N  249 (351)
T ss_dssp             H
T ss_pred             h
Confidence            3

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=96.60  E-value=0.0019  Score=64.85  Aligned_cols=69  Identities=23%  Similarity=0.333  Sum_probs=48.5

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCccc-chhcccccCCCCeeEEEecCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL-SLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~-~~~~l~~~~~~~~DilInaT~~  451 (465)
                      ..+.++++.|+|.|.+|++++..|...|++|++++|+.++.  .+..++.... +++++    +.++|+|+.++|.
T Consensus       164 ~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~--~~~~~g~~~~~~l~el----l~~aDvV~l~~P~  233 (347)
T 1mx3_A          164 ARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG--VERALGLQRVSTLQDL----LFHSDCVTLHCGL  233 (347)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTT--HHHHHTCEECSSHHHH----HHHCSEEEECCCC
T ss_pred             cCCCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh--hHhhcCCeecCCHHHH----HhcCCEEEEcCCC
Confidence            36789999999999999999999999999999999976542  2334443221 22222    2245666666664

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=96.60  E-value=0.0044  Score=61.49  Aligned_cols=42  Identities=24%  Similarity=0.339  Sum_probs=39.2

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET  423 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~  423 (465)
                      -++.|+|+|.+|.+++..|++.|.+|++++|++++++.+.+.
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~   56 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVS   56 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHh
Confidence            479999999999999999999999999999999999988765

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=96.60  E-value=0.0032  Score=60.90  Aligned_cols=70  Identities=23%  Similarity=0.171  Sum_probs=49.2

Q ss_pred             CcEEEEEccchhHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAK--GARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~--G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      .+++.|+|+|.+|.+++..|.+.  |.+|++++|++++.+.+.+ .+.......+..+ .+.++|+||-|+|..
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~-~~~~aDvVilavp~~   77 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE-RGIVDEATADFKV-FAALADVIILAVPIK   77 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH-TTSCSEEESCTTT-TGGGCSEEEECSCHH
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH-cCCcccccCCHHH-hhcCCCEEEEcCCHH
Confidence            36899999999999999999988  4699999999998887654 3321001112222 234578888887743

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=96.59  E-value=0.00084  Score=66.65  Aligned_cols=73  Identities=18%  Similarity=0.262  Sum_probs=47.4

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHH---HHHHHHHHHC------Ccc----cchhc---cc----ccCC
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYD---RARELAETVG------GHA----LSLAD---LE----NFNP  439 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~---~a~~la~~~~------~~~----~~~~~---l~----~~~~  439 (465)
                      +|+|+|+|+ ||+|++++..|++.|++|+++.|+..   +..+..+.++      ...    .|+.+   +.    ....
T Consensus         2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~   81 (327)
T 1jtv_A            2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE   81 (327)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHhc
Confidence            688999998 59999999999999998877766533   3333333321      111    13221   11    1123


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +..|+|||+++++.
T Consensus        82 g~iD~lVnnAG~~~   95 (327)
T 1jtv_A           82 GRVDVLVCNAGLGL   95 (327)
T ss_dssp             SCCSEEEECCCCCC
T ss_pred             CCCCEEEECCCcCC
Confidence            56999999998764

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=96.58  E-value=0.033  Score=51.91  Aligned_cols=120  Identities=16%  Similarity=0.174  Sum_probs=72.5

Q ss_pred             CcEEEEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHH
Q 012352           23 PTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVD  102 (465)
Q Consensus        23 ~~~icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~  102 (465)
                      ++.| ..|...+.+++...++.+...|++++|+|..   +....+.++.+.+..+-.++ -.      |.. .+. ++  
T Consensus        16 ~~~i-~v~r~~~~~~~~~~~~al~~gGv~~iel~~k---~~~~~~~i~~l~~~~~~~~v-ga------gtv-i~~-d~--   80 (214)
T 1wbh_A           16 GPVV-PVIVVKKLEHAVPMAKALVAGGVRVLNVTLR---TECAVDAIRAIAKEVPEAIV-GA------GTV-LNP-QQ--   80 (214)
T ss_dssp             CSEE-EEECCSSGGGHHHHHHHHHHTTCCEEEEESC---STTHHHHHHHHHHHCTTSEE-EE------ESC-CSH-HH--
T ss_pred             CCEE-EEEECCCHHHHHHHHHHHHHcCCCEEEEeCC---ChhHHHHHHHHHHHCcCCEE-ee------CEE-EEH-HH--
Confidence            4444 4567889999999999998999999999953   22334456656655542222 11      222 232 33  


Q ss_pred             HHHHHHHhCCcEEEEeeccccchhHHHHhcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 012352          103 VLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (465)
Q Consensus       103 ~l~~~~~~~~~~iDiEl~~~~~~~~~l~~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKi  172 (465)
                       .+.+++.|+|++=.- ..+.+..+.-   +..+..+|...|    ||  +|    ..++.+.|+|++|+
T Consensus        81 -~~~A~~aGAd~v~~p-~~d~~v~~~~---~~~g~~~i~G~~----t~--~e----~~~A~~~Gad~v~~  135 (214)
T 1wbh_A           81 -LAEVTEAGAQFAISP-GLTEPLLKAA---TEGTIPLIPGIS----TV--SE----LMLGMDYGLKEFKF  135 (214)
T ss_dssp             -HHHHHHHTCSCEEES-SCCHHHHHHH---HHSSSCEEEEES----SH--HH----HHHHHHTTCCEEEE
T ss_pred             -HHHHHHcCCCEEEcC-CCCHHHHHHH---HHhCCCEEEecC----CH--HH----HHHHHHCCCCEEEE
Confidence             446777899998433 2222222221   224566676666    33  23    45566799999999

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=96.57  E-value=0.00073  Score=67.30  Aligned_cols=71  Identities=17%  Similarity=0.303  Sum_probs=48.8

Q ss_pred             ccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       376 ~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      +..+.++++.|+|.|.+|++++..|...|++|+.++|+......+    . ......++.+ .+.++|+|+.++|..
T Consensus       135 ~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~----~-~~~~~~~l~e-ll~~aDvV~l~lPlt  205 (324)
T 3hg7_A          135 YQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGF----D-QVYQLPALNK-MLAQADVIVSVLPAT  205 (324)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTC----S-EEECGGGHHH-HHHTCSEEEECCCCC
T ss_pred             CcccccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhh----h-cccccCCHHH-HHhhCCEEEEeCCCC
Confidence            456889999999999999999999999999999999986332111    0 0111222322 234567777776643

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.56  E-value=0.0025  Score=63.41  Aligned_cols=70  Identities=21%  Similarity=0.219  Sum_probs=52.3

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----------c--chhcccccCCCCeeEEEecC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----------L--SLADLENFNPEDGMILANTT  449 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----------~--~~~~l~~~~~~~~DilInaT  449 (465)
                      .++.|+|+|.+|..++..|++.|.+|++++|++++++.+.+..+...          +  ...++.+ .+.++|+||.|+
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vi~~v   83 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGL-AVKDADVILIVV   83 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHH-HHTTCSEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHH-HHhcCCEEEEeC
Confidence            57999999999999999999999999999999999988877632100          0  0112222 234689999998


Q ss_pred             CCC
Q 012352          450 SIG  452 (465)
Q Consensus       450 ~~g  452 (465)
                      |..
T Consensus        84 ~~~   86 (359)
T 1bg6_A           84 PAI   86 (359)
T ss_dssp             CGG
T ss_pred             Cch
Confidence            764

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.56  E-value=0.0046  Score=60.89  Aligned_cols=70  Identities=20%  Similarity=0.302  Sum_probs=51.7

Q ss_pred             CCcEEEEEc-cchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchhc------cccc-CCCCeeEEEecCC
Q 012352          380 AGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLAD------LENF-NPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~G-aGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~~------l~~~-~~~~~DilInaT~  450 (465)
                      .+++|+|+| +||+|++++..++..|++|+++.|++++.+.+. +++.. .++..+      +.+. ....+|++||+++
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~~g  218 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL-KAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVG  218 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCCEEEECCCccHHHHHHHHhCCCCceEEEECCc
Confidence            478999999 589999999999999999999999988876654 46643 223211      1111 1236999999997

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=96.55  E-value=0.002  Score=65.23  Aligned_cols=72  Identities=17%  Similarity=0.208  Sum_probs=51.8

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~-v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ..+.++++.|+|.|.+|++++..|...|++ |++++|+..+.+ .+.+++....  .++.+ .+.++|+|+.++|..
T Consensus       160 ~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~-~~~~~g~~~~--~~l~e-ll~~aDvV~l~~P~t  232 (364)
T 2j6i_A          160 YDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKD-AEEKVGARRV--ENIEE-LVAQADIVTVNAPLH  232 (364)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHH-HHHHTTEEEC--SSHHH-HHHTCSEEEECCCCS
T ss_pred             ccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchh-HHHhcCcEec--CCHHH-HHhcCCEEEECCCCC
Confidence            468899999999999999999999999996 999999865433 2334442221  12222 234578888888764

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=96.54  E-value=0.0025  Score=63.61  Aligned_cols=69  Identities=16%  Similarity=0.207  Sum_probs=49.3

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ..+.++++.|+|.|.+|++++..|...|++|++++|+.++.  + +++ ....  +++.+ .+.++|+|+.++|..
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~-~~~~--~~l~e-ll~~aDvV~l~~p~~  210 (333)
T 1j4a_A          142 REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--L-EKK-GYYV--DSLDD-LYKQADVISLHVPDV  210 (333)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--H-HHT-TCBC--SCHHH-HHHHCSEEEECSCCC
T ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--H-Hhh-Ceec--CCHHH-HHhhCCEEEEcCCCc
Confidence            46889999999999999999999999999999999987654  2 222 1222  12222 123567777777653

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=96.53  E-value=0.0057  Score=60.87  Aligned_cols=71  Identities=25%  Similarity=0.333  Sum_probs=52.1

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchh---cc----cccCCCCeeEEEecCC
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLA---DL----ENFNPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~---~l----~~~~~~~~DilInaT~  450 (465)
                      .+++|+|+|+ ||+|++++..++..|++|+++.|++++.+ ++++++.. .+++.   ++    .+...+.+|++||+++
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~-~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g  247 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEE-LFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSV  247 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHH-HHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHH-HHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCC
Confidence            4789999999 79999999999999999999999988874 45566643 23322   11    1101126999999987


Q ss_pred             C
Q 012352          451 I  451 (465)
Q Consensus       451 ~  451 (465)
                      .
T Consensus       248 ~  248 (347)
T 2hcy_A          248 S  248 (347)
T ss_dssp             C
T ss_pred             c
Confidence            5

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=96.53  E-value=0.0013  Score=66.01  Aligned_cols=41  Identities=37%  Similarity=0.366  Sum_probs=37.4

Q ss_pred             ccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHH
Q 012352          376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDR  416 (465)
Q Consensus       376 ~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~  416 (465)
                      +..+.+|++.|+|.|.+|++++..|...|++|++++|+.++
T Consensus       166 ~~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  206 (340)
T 4dgs_A          166 GHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLS  206 (340)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCT
T ss_pred             cccccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCccc
Confidence            35688999999999999999999999999999999998654

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.53  E-value=0.0051  Score=60.81  Aligned_cols=71  Identities=21%  Similarity=0.322  Sum_probs=53.4

Q ss_pred             CCcEEEEEc-cchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchh------ccccc-CCCCeeEEEecCC
Q 012352          380 AGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLA------DLENF-NPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~G-aGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~------~l~~~-~~~~~DilInaT~  450 (465)
                      .+++|+|+| +|++|.+++..++..|++|+++.|++++.+ ++++++.. .++..      .+.+. ....+|++||+++
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~-~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g  226 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLK-IAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVG  226 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECCG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECCC
Confidence            478999999 699999999999999999999999988876 66677753 23321      11111 1246999999987


Q ss_pred             C
Q 012352          451 I  451 (465)
Q Consensus       451 ~  451 (465)
                      .
T Consensus       227 ~  227 (334)
T 3qwb_A          227 K  227 (334)
T ss_dssp             G
T ss_pred             h
Confidence            4

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=96.53  E-value=0.0056  Score=60.94  Aligned_cols=72  Identities=18%  Similarity=0.258  Sum_probs=53.3

Q ss_pred             CCcEEEEEccc-hhHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHCCc-ccchhc------ccccCC-CCeeEEEecC
Q 012352          380 AGKLFVVIGAG-GAGKALAYGAKAK-GARVVIANRTYDRARELAETVGGH-ALSLAD------LENFNP-EDGMILANTT  449 (465)
Q Consensus       380 ~~k~vlV~GaG-g~g~ai~~~L~~~-G~~v~i~~R~~~~a~~la~~~~~~-~~~~~~------l~~~~~-~~~DilInaT  449 (465)
                      .+++|+|+|+| ++|++++..++.. |++|+++.|++++.+.+ ++++.. .++..+      +.+... +.+|++||++
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  248 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAA-KRAGADYVINASMQDPLAEIRRITESKGVDAVIDLN  248 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHH-HHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESC
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHhCCCEEecCCCccHHHHHHHHhcCCCceEEEECC
Confidence            47899999998 9999999999999 99999999998886655 567643 222211      222111 4799999999


Q ss_pred             CCC
Q 012352          450 SIG  452 (465)
Q Consensus       450 ~~g  452 (465)
                      +..
T Consensus       249 g~~  251 (347)
T 1jvb_A          249 NSE  251 (347)
T ss_dssp             CCH
T ss_pred             CCH
Confidence            753

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=96.52  E-value=0.0012  Score=64.87  Aligned_cols=41  Identities=27%  Similarity=0.369  Sum_probs=31.3

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAE  422 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~  422 (465)
                      ++|-+||.|-||..++..|.+.|++|++|||++++++.+.+
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~   46 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTK   46 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTT
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            57999999999999999999999999999999999887754

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=96.52  E-value=0.0058  Score=61.05  Aligned_cols=71  Identities=14%  Similarity=0.210  Sum_probs=52.9

Q ss_pred             CCcEEEEEc-cchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchh------ccccc-CCCCeeEEEecCC
Q 012352          380 AGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLA------DLENF-NPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~G-aGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~------~l~~~-~~~~~DilInaT~  450 (465)
                      .+++|+|+| +||+|.+++..++..|++|+++.|++++.+.+ ++++.. .++..      .+.+. ....+|++||+++
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~G  240 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMA-EKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIG  240 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCcEEEecCChHHHHHHHHHhcCCCceEEEECCC
Confidence            478999999 58999999999999999999999999887665 667643 22221      11111 1236999999997


Q ss_pred             C
Q 012352          451 I  451 (465)
Q Consensus       451 ~  451 (465)
                      .
T Consensus       241 ~  241 (354)
T 2j8z_A          241 G  241 (354)
T ss_dssp             G
T ss_pred             c
Confidence            5

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.51  E-value=0.0005  Score=68.21  Aligned_cols=39  Identities=21%  Similarity=0.130  Sum_probs=36.1

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHH
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYD  415 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~  415 (465)
                      ..+.++++.|+|.|.+|++++..|...|++|+.++|+++
T Consensus       135 ~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~  173 (315)
T 3pp8_A          135 YTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRK  173 (315)
T ss_dssp             CCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred             CCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCch
Confidence            457899999999999999999999999999999999865

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=96.49  E-value=0.0021  Score=68.73  Aligned_cols=37  Identities=16%  Similarity=0.287  Sum_probs=34.2

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCH
Q 012352          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY  414 (465)
Q Consensus       378 ~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~  414 (465)
                      .+++++|+|+|+||+|..++..|+..|+ ++++++++.
T Consensus       323 kL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          323 IIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             HHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            4778999999999999999999999999 999999864

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=96.49  E-value=0.0029  Score=66.28  Aligned_cols=69  Identities=22%  Similarity=0.276  Sum_probs=52.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC----c-c---cchhcccccCCCCeeEEEecCCCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG----H-A---LSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~----~-~---~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ++.|+|+|.+|.+++..|++.|.+|++++|++++++++.++++.    . .   .+.+++-+ .+.++|+||-++|.+
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~-~l~~aDvVilaVp~~   79 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAA-SLKKPRKALILVQAG   79 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHH-HBCSSCEEEECCCCS
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHh-cccCCCEEEEecCCh
Confidence            58899999999999999999999999999999999999887541    1 1   12222211 123578888888775

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}

Probab=96.49  E-value=0.0021  Score=74.82  Aligned_cols=48  Identities=25%  Similarity=0.486  Sum_probs=40.4

Q ss_pred             cccCCcEEEEEccc-h-hHHHHHHHHHHCCCeEEEE-ECCHHHHHHHHHHH
Q 012352          377 SALAGKLFVVIGAG-G-AGKALAYGAKAKGARVVIA-NRTYDRARELAETV  424 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g-~g~ai~~~L~~~G~~v~i~-~R~~~~a~~la~~~  424 (465)
                      ..+++|++||+|++ | +|++++..|++.|++|+++ .|+.++++++++++
T Consensus       472 msL~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL  522 (1688)
T 2pff_A          472 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSI  522 (1688)
T ss_dssp             CCCCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHT
T ss_pred             cccCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHH
Confidence            56789999999996 6 9999999999999999988 68777766666555

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=96.49  E-value=0.00083  Score=67.16  Aligned_cols=40  Identities=28%  Similarity=0.330  Sum_probs=36.9

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHH
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDR  416 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~  416 (465)
                      ..+.++++.|+|.|.+|++++..|...|++|++++|+.++
T Consensus       160 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~  199 (333)
T 3ba1_A          160 TKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKP  199 (333)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCT
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchh
Confidence            4688999999999999999999999999999999998764

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=96.48  E-value=0.0012  Score=64.56  Aligned_cols=66  Identities=17%  Similarity=0.144  Sum_probs=48.1

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      .+++.|+|.|.+|.+++..|++.|++|++++|++++++.+.+. +...  ..++.+ ... +|+||-++|.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~--~~~~~~-~~~-aDvvi~~vp~   80 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEA-GATL--ADSVAD-VAA-ADLIHITVLD   80 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHT-TCEE--CSSHHH-HTT-SSEEEECCSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHC-CCEE--cCCHHH-HHh-CCEEEEECCC
Confidence            3579999999999999999999999999999999988887653 2211  112222 223 6677766663

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=96.48  E-value=0.0054  Score=60.58  Aligned_cols=71  Identities=18%  Similarity=0.311  Sum_probs=52.3

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchhc------cccc-CCCCeeEEEecCC
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLAD------LENF-NPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~~------l~~~-~~~~~DilInaT~  450 (465)
                      .+++|+|+|+ ||+|++++..++..|++|+++.|+.++.+.+ .+++.. .++..+      +.+. ....+|++||+++
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~-~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d~vi~~~g  223 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETA-RKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIG  223 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEECSC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCCEEEECCCHHHHHHHHHHhCCCCCeEEEECCc
Confidence            4789999996 8999999999999999999999998887655 456643 222211      1110 1236999999997


Q ss_pred             C
Q 012352          451 I  451 (465)
Q Consensus       451 ~  451 (465)
                      .
T Consensus       224 ~  224 (333)
T 1wly_A          224 K  224 (333)
T ss_dssp             T
T ss_pred             H
Confidence            5

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=96.48  E-value=0.0016  Score=64.29  Aligned_cols=65  Identities=20%  Similarity=0.153  Sum_probs=47.9

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       378 ~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      .+.++++.|+|.|.+|++++..|...|++|++++|+.+ . .     +.  ....++.+ .+.++|+|+.++|..
T Consensus       121 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~-~-~-----~~--~~~~~l~e-ll~~aDvV~l~~P~~  185 (303)
T 1qp8_A          121 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK-E-G-----PW--RFTNSLEE-ALREARAAVCALPLN  185 (303)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC-C-S-----SS--CCBSCSHH-HHTTCSEEEECCCCS
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc-c-c-----Cc--ccCCCHHH-HHhhCCEEEEeCcCc
Confidence            58899999999999999999999999999999999865 1 1     11  11122222 234577777777765

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=96.47  E-value=0.003  Score=63.60  Aligned_cols=43  Identities=28%  Similarity=0.372  Sum_probs=39.5

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET  423 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~  423 (465)
                      ..++.|+|+|.+|.+++..|++.|.+|++|+|++++++.+.+.
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~   71 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAE   71 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHc
Confidence            4579999999999999999999999999999999998888765

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.47  E-value=0.0055  Score=60.97  Aligned_cols=76  Identities=16%  Similarity=0.256  Sum_probs=55.1

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCCcc-----cch-hcccccCCCCeeEEEecCC
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGHA-----LSL-ADLENFNPEDGMILANTTS  450 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~~~-----~~~-~~l~~~~~~~~DilInaT~  450 (465)
                      ..+++|.|+|+|.+|.++++.|+..|.  +++++++++++++..+.++....     +.+ .+..+ .+.++|+||.+++
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~-a~~~aDiVvi~ag   85 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYS-DAKDADLVVITAG   85 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGG-GGTTCSEEEECCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHH-HhcCCCEEEECCC
Confidence            346789999999999999999999886  89999999999987776664211     011 11122 4578999999988


Q ss_pred             CCCCC
Q 012352          451 IGMQP  455 (465)
Q Consensus       451 ~gm~~  455 (465)
                      ....|
T Consensus        86 ~~~kp   90 (326)
T 3vku_A           86 APQKP   90 (326)
T ss_dssp             CC---
T ss_pred             CCCCC
Confidence            75443

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.46  E-value=0.0026  Score=62.94  Aligned_cols=72  Identities=17%  Similarity=0.115  Sum_probs=48.8

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCH----HHHHHHHHHH--CCcc--cchhc---ccccCCC--CeeE
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY----DRARELAETV--GGHA--LSLAD---LENFNPE--DGMI  444 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~----~~a~~la~~~--~~~~--~~~~~---l~~~~~~--~~Di  444 (465)
                      +..++|+|+|+ |.+|++++..|.+.|++|+++.|+.    ++++.+.+..  +...  .++.+   +.+ .+.  ++|+
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~-~~~~~~~d~   86 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEK-ILKEHEIDI   86 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHH-HHHHTTCCE
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHH-HHhhCCCCE
Confidence            34578999998 8999999999999999999999976    5555333221  2222  23322   322 234  7899


Q ss_pred             EEecCCC
Q 012352          445 LANTTSI  451 (465)
Q Consensus       445 lInaT~~  451 (465)
                      ||++++.
T Consensus        87 Vi~~a~~   93 (346)
T 3i6i_A           87 VVSTVGG   93 (346)
T ss_dssp             EEECCCG
T ss_pred             EEECCch
Confidence            9999875

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=96.46  E-value=0.0011  Score=65.17  Aligned_cols=71  Identities=24%  Similarity=0.231  Sum_probs=47.6

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHH--HHHHHHCC----cc--cchhc---ccccCCC--CeeEE
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRAR--ELAETVGG----HA--LSLAD---LENFNPE--DGMIL  445 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~--~la~~~~~----~~--~~~~~---l~~~~~~--~~Dil  445 (465)
                      ++++|||+|+ |++|++++..|.+.|++|++++|+.++..  .+ +.+..    ..  .++.+   +.+ .+.  +.|+|
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~-~~~~~~~d~v   79 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRL-KELGIENDVKIIHMDLLEFSNIIR-TIEKVQPDEV   79 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHH-HHTTCTTTEEECCCCTTCHHHHHH-HHHHHCCSEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccH-hhccccCceeEEECCCCCHHHHHH-HHHhcCCCEE
Confidence            4689999998 79999999999999999999999865432  22 22211    11  12222   222 122  46999


Q ss_pred             EecCCCC
Q 012352          446 ANTTSIG  452 (465)
Q Consensus       446 InaT~~g  452 (465)
                      ||+++..
T Consensus        80 ih~A~~~   86 (345)
T 2z1m_A           80 YNLAAQS   86 (345)
T ss_dssp             EECCCCC
T ss_pred             EECCCCc
Confidence            9999865

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=96.45  E-value=0.0023  Score=62.17  Aligned_cols=35  Identities=20%  Similarity=0.132  Sum_probs=30.2

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEEC-CHH
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYD  415 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R-~~~  415 (465)
                      +|+|||+|+ |++|++++..|.+.|++|+++.| +.+
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~   37 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPE   37 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC--
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCcc
Confidence            478999997 79999999999999999999888 654

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.45  E-value=0.00049  Score=67.98  Aligned_cols=69  Identities=17%  Similarity=0.193  Sum_probs=45.5

Q ss_pred             ccccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchh---cccccCCCCeeEEEecC
Q 012352          376 SSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLA---DLENFNPEDGMILANTT  449 (465)
Q Consensus       376 ~~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~---~l~~~~~~~~DilInaT  449 (465)
                      ....++|+|||+|+ |++|++++..|.+.|++|+++.|+..+       -+...  .++.   .+.+ .+.++|+||+++
T Consensus        14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-------~~~~~~~~Dl~d~~~~~~-~~~~~d~vih~A   85 (347)
T 4id9_A           14 LVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG-------TGGEEVVGSLEDGQALSD-AIMGVSAVLHLG   85 (347)
T ss_dssp             -------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS-------SCCSEEESCTTCHHHHHH-HHTTCSEEEECC
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC-------CCccEEecCcCCHHHHHH-HHhCCCEEEECC
Confidence            34577899999998 799999999999999999999998654       11111  2322   2223 345789999998


Q ss_pred             CCC
Q 012352          450 SIG  452 (465)
Q Consensus       450 ~~g  452 (465)
                      +..
T Consensus        86 ~~~   88 (347)
T 4id9_A           86 AFM   88 (347)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            754

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=96.45  E-value=0.0036  Score=63.90  Aligned_cols=71  Identities=10%  Similarity=-0.011  Sum_probs=51.7

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc-cchhcccccCCCCeeEEEecCCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA-LSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~-~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ..+.++++.|+|.|.+|++++..|..+|++|++++|+..+.+ .+..++... .++++    .+.++|+|+.++|..
T Consensus       187 ~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~-~~~~~G~~~~~~l~e----ll~~aDvV~l~~Plt  258 (393)
T 2nac_A          187 YDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPES-VEKELNLTWHATRED----MYPVCDVVTLNCPLH  258 (393)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHH-HHHHHTCEECSSHHH----HGGGCSEEEECSCCC
T ss_pred             ccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchh-hHhhcCceecCCHHH----HHhcCCEEEEecCCc
Confidence            468899999999999999999999999999999999864432 334444332 12322    234578888887754

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=96.44  E-value=0.0031  Score=61.47  Aligned_cols=70  Identities=13%  Similarity=0.111  Sum_probs=49.1

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCH------HHHHHHHHH--HCCcc--cchh---cccccCCCCeeEEE
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY------DRARELAET--VGGHA--LSLA---DLENFNPEDGMILA  446 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~------~~a~~la~~--~~~~~--~~~~---~l~~~~~~~~DilI  446 (465)
                      .++++|+|+ |++|++++.+|.+.|++|+++.|+.      ++++.+.+.  -+...  .++.   .+.+ .+.++|+||
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~-a~~~~d~vi   82 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVS-VLKQVDIVI   82 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHH-HHTTCSEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHH-HHcCCCEEE
Confidence            467999997 8999999999999999999999985      454444321  12222  2332   2333 355789999


Q ss_pred             ecCCC
Q 012352          447 NTTSI  451 (465)
Q Consensus       447 naT~~  451 (465)
                      |+++.
T Consensus        83 ~~a~~   87 (321)
T 3c1o_A           83 SALPF   87 (321)
T ss_dssp             ECCCG
T ss_pred             ECCCc
Confidence            99875

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=96.43  E-value=0.0007  Score=66.41  Aligned_cols=40  Identities=38%  Similarity=0.491  Sum_probs=36.5

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHH
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDR  416 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~  416 (465)
                      ..+.++++.|+|.|.+|++++..|...|++|+.++|+.++
T Consensus       118 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  157 (290)
T 3gvx_A          118 TLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVD  157 (290)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCC
T ss_pred             eeeecchheeeccCchhHHHHHHHHhhCcEEEEEeccccc
Confidence            4578999999999999999999999999999999998653

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.43  E-value=0.0034  Score=60.65  Aligned_cols=70  Identities=21%  Similarity=0.261  Sum_probs=48.2

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECC------HHHHHHHHHHH--CCcc--cchhc---ccccCCCCeeEEE
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT------YDRARELAETV--GGHA--LSLAD---LENFNPEDGMILA  446 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~------~~~a~~la~~~--~~~~--~~~~~---l~~~~~~~~DilI  446 (465)
                      .++|+|+|+ |.+|++++.+|.+.|++|+++.|+      +++++.+...-  +...  .++.+   +.+ .+.++|+||
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~-~~~~~d~vi   82 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVE-AVKNVDVVI   82 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHH-HHHTCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHH-HHcCCCEEE
Confidence            467999998 899999999999999999999997      44544332211  2222  23322   333 345689999


Q ss_pred             ecCCC
Q 012352          447 NTTSI  451 (465)
Q Consensus       447 naT~~  451 (465)
                      ++++.
T Consensus        83 ~~a~~   87 (308)
T 1qyc_A           83 STVGS   87 (308)
T ss_dssp             ECCCG
T ss_pred             ECCcc
Confidence            99875

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=96.42  E-value=0.0052  Score=60.14  Aligned_cols=133  Identities=19%  Similarity=0.235  Sum_probs=82.6

Q ss_pred             HHHHHHcCCCeeEecccc----ccHHHHHHHh-hcCCCCeeEeccCch-----HHHhhhccccCHHHHhccc---eeeEE
Q 012352          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHK-----EAAVKCCDEVDTVAKSIGA---VNCII  339 (465)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~vT~P~K-----~~v~~~~d~~~~~A~~~ga---vNtv~  339 (465)
                      .+..+++|+......+.-    +++.+.++.+ .++.+.|+.|..|.-     ..++..+   ++. +.+..   .|.=.
T Consensus        75 ~k~c~~vGi~s~~~~lp~~~se~ell~~I~~LN~D~~V~GIlVQlPLP~hid~~~i~~~I---~p~-KDVDG~hp~N~G~  150 (303)
T 4b4u_A           75 GNACRRVGMDSLKIELPQETTTEQLLAEIEKLNANPDVHGILLQHPVPAQIDERACFDAI---SLA-KDVDGVTCLGFGR  150 (303)
T ss_dssp             HHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHS---CGG-GCTTCCCHHHHHH
T ss_pred             HHHHHHcCCeEEEEecCccCCHHHHHHHHHHhcCCCCccEEEEeCCCccccChHHHHhcc---Ccc-cccCccCcchHHH
Confidence            668999999876554443    3577777777 578999999999953     2233222   110 11111   11000


Q ss_pred             EeccCCeEEEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHH
Q 012352          340 RRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRAR  418 (465)
Q Consensus       340 ~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~  418 (465)
                      ..  .|.-.=.-.--.|++..|++.           +.++.||+++|+|-+ -.|+-++..|.+.++.|+++.+.....+
T Consensus       151 L~--~g~~~~~PcTp~gv~~lL~~~-----------~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T~dl~  217 (303)
T 4b4u_A          151 MA--MGEAAYGSATPAGIMTILKEN-----------NIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRTQNLP  217 (303)
T ss_dssp             HH--TTCCCCCCHHHHHHHHHHHHT-----------TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH
T ss_pred             hc--CCCCcccCccHHHHHHHHHHH-----------CCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCCCCHH
Confidence            00  000000011246777777763           367899999999998 6899999999999999999976555545


Q ss_pred             HHHH
Q 012352          419 ELAE  422 (465)
Q Consensus       419 ~la~  422 (465)
                      +...
T Consensus       218 ~~~~  221 (303)
T 4b4u_A          218 ELVK  221 (303)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            4443

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.42  E-value=0.0031  Score=65.73  Aligned_cols=69  Identities=23%  Similarity=0.343  Sum_probs=56.8

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCccc-----chhcccccCCCCeeEEEecCCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL-----SLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~-----~~~~l~~~~~~~~DilInaT~~  451 (465)
                      +++|+|+|..|+.++..|...|.+|+++++++++.+.+.++++...+     +.+-+.+....++|++|-+|+-
T Consensus         5 ~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~   78 (461)
T 4g65_A            5 KIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNT   78 (461)
T ss_dssp             EEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCC
Confidence            69999999999999999999999999999999999999988864322     2333444356789999998864

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=96.42  E-value=0.0013  Score=63.76  Aligned_cols=40  Identities=23%  Similarity=0.331  Sum_probs=36.7

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAE  422 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~  422 (465)
                      ++.|+|+|.+|.+++..|.+.|.+|++++|++++++.+.+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~   41 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQD   41 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHT
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            5889999999999999999999999999999999887764

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=96.41  E-value=0.0022  Score=62.99  Aligned_cols=71  Identities=17%  Similarity=0.162  Sum_probs=46.4

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHH--HHCC-----cc--cchhc---ccccCCCCeeEEE
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAE--TVGG-----HA--LSLAD---LENFNPEDGMILA  446 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~--~~~~-----~~--~~~~~---l~~~~~~~~DilI  446 (465)
                      ++|+|||+|+ |++|++++..|.+.|++|+++.|+.++..++..  .+..     ..  .++.+   +.+ .+.++|+||
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~~~~~d~Vi   82 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDE-AIKGCTGVF   82 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHH-HHTTCSEEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHH-HHcCCCEEE
Confidence            5789999995 799999999999999999998998763322221  1111     11  13322   222 245689999


Q ss_pred             ecCCC
Q 012352          447 NTTSI  451 (465)
Q Consensus       447 naT~~  451 (465)
                      |+++.
T Consensus        83 h~A~~   87 (337)
T 2c29_D           83 HVATP   87 (337)
T ss_dssp             ECCCC
T ss_pred             Eeccc
Confidence            98864

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=96.40  E-value=0.0017  Score=65.13  Aligned_cols=41  Identities=29%  Similarity=0.310  Sum_probs=38.3

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET  423 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~  423 (465)
                      ++.|+|+|.+|.+++..|++.|.+|++++|++++++.+.+.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~   57 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEK   57 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc
Confidence            79999999999999999999999999999999998888765

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=96.40  E-value=0.00051  Score=67.76  Aligned_cols=76  Identities=20%  Similarity=0.105  Sum_probs=46.9

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-cc--cchhc---ccccCCCC--eeEEEe
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-HA--LSLAD---LENFNPED--GMILAN  447 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-~~--~~~~~---l~~~~~~~--~DilIn  447 (465)
                      ..+++++|||+|+ |++|++++..|.+.|++|+++.|+.....+....+.. ..  .++.+   +.+ .+.+  +|+|||
T Consensus        17 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~-~~~~~~~D~vih   95 (333)
T 2q1w_A           17 RGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQ-LIGDLQPDAVVH   95 (333)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHH-HHHHHCCSEEEE
T ss_pred             ecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHH-HHhccCCcEEEE
Confidence            4567889999997 7999999999999999999999975422111111111 11  12222   222 1223  899999


Q ss_pred             cCCCCC
Q 012352          448 TTSIGM  453 (465)
Q Consensus       448 aT~~gm  453 (465)
                      +++...
T Consensus        96 ~A~~~~  101 (333)
T 2q1w_A           96 TAASYK  101 (333)
T ss_dssp             CCCCCS
T ss_pred             CceecC
Confidence            988653

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.40  E-value=0.0085  Score=60.30  Aligned_cols=71  Identities=24%  Similarity=0.404  Sum_probs=53.7

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCc-ccchh------cccc---cCCCCeeEEEec
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGH-ALSLA------DLEN---FNPEDGMILANT  448 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~-~~~~~------~l~~---~~~~~~DilIna  448 (465)
                      .+++|||+|+|++|.+++..++..|+ +|+++.+++++.+ ++++++.. .++..      .+.+   ...+++|++|++
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~-~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~  260 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRR-LAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIEC  260 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHH-HHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH-HHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEEC
Confidence            47899999999999999999999999 8999999988854 77788764 23321      1111   122479999999


Q ss_pred             CCC
Q 012352          449 TSI  451 (465)
Q Consensus       449 T~~  451 (465)
                      ++.
T Consensus       261 ~G~  263 (370)
T 4ej6_A          261 AGV  263 (370)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            985

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=96.39  E-value=0.002  Score=65.52  Aligned_cols=67  Identities=18%  Similarity=0.245  Sum_probs=48.9

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ..+.+|++.|+|.|.+|++++..|...|++|++++|..+...     .+....+++   + .+.++|+|+.++|..
T Consensus       115 ~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~-----~~~~~~sl~---e-ll~~aDiV~l~~Plt  181 (381)
T 3oet_A          115 FSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG-----DEGDFRTLD---E-LVQEADVLTFHTPLY  181 (381)
T ss_dssp             CCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTT-----CCSCBCCHH---H-HHHHCSEEEECCCCC
T ss_pred             CccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhc-----cCcccCCHH---H-HHhhCCEEEEcCcCC
Confidence            578899999999999999999999999999999998543321     111112232   2 234578888888865

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.38  E-value=0.0079  Score=59.84  Aligned_cols=74  Identities=16%  Similarity=0.212  Sum_probs=54.0

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCCc------ccch-hcccccCCCCeeEEEecCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGH------ALSL-ADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~~------~~~~-~~l~~~~~~~~DilInaT~~  451 (465)
                      .+++.|+|+|.+|.++++.|+..|.  +|+++++++++++..+.++...      .+.+ .+..+ .+.++|+||.+++.
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~-a~~~aDvVvi~ag~   83 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYE-DCKDADIVCICAGA   83 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGG-GGTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHH-HhCCCCEEEEeccc
Confidence            4689999999999999999999886  8999999999988765554311      0111 11122 45689999999876


Q ss_pred             CCCC
Q 012352          452 GMQP  455 (465)
Q Consensus       452 gm~~  455 (465)
                      ...|
T Consensus        84 p~kp   87 (326)
T 3pqe_A           84 NQKP   87 (326)
T ss_dssp             CCCT
T ss_pred             CCCC
Confidence            5433

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=96.37  E-value=0.0069  Score=59.74  Aligned_cols=73  Identities=21%  Similarity=0.216  Sum_probs=52.9

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHC-------Cc-ccch-hcccccCCCCeeEEEecCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVG-------GH-ALSL-ADLENFNPEDGMILANTTS  450 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~-------~~-~~~~-~~l~~~~~~~~DilInaT~  450 (465)
                      .+++.|+|+|.+|.+++..|+..|. +|++++|++++++..+..+.       .. .+.. .+. + .+.++|+||.+++
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~-a~~~aDiVi~avg   81 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-A-DISGSDVVIITAS   81 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-G-GGTTCSEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-H-HhCCCCEEEEeCC
Confidence            3589999999999999999999998 99999999887776432221       00 1111 233 2 3567999999998


Q ss_pred             CCCCC
Q 012352          451 IGMQP  455 (465)
Q Consensus       451 ~gm~~  455 (465)
                      .+..+
T Consensus        82 ~p~~~   86 (317)
T 2ewd_A           82 IPGRP   86 (317)
T ss_dssp             CSSCC
T ss_pred             CCCCC
Confidence            76544

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=96.37  E-value=0.0017  Score=63.76  Aligned_cols=65  Identities=18%  Similarity=0.137  Sum_probs=47.5

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~  450 (465)
                      +++.|+|+|.+|.+++..|.+.|.+|++++|++++++.+.+ .+....  .+..+ .+.++|+||.|+|
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-~g~~~~--~~~~~-~~~~~DvVi~av~   95 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQ-EGARLG--RTPAE-VVSTCDITFACVS   95 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHH-TTCEEC--SCHHH-HHHHCSEEEECCS
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-cCCEEc--CCHHH-HHhcCCEEEEeCC
Confidence            57999999999999999999999999999999998887765 232111  11111 1234677777776

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.36  E-value=0.0051  Score=61.06  Aligned_cols=70  Identities=20%  Similarity=0.230  Sum_probs=53.0

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchh--c----ccccCCCCeeEEEecCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLA--D----LENFNPEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~--~----l~~~~~~~~DilInaT~~  451 (465)
                      .+++|+|+|+|++|.+++..++..|++|+++.|++++.+.+ ++++.. .+++.  +    +.+.. +.+|++||+++.
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~lGa~~~~d~~~~~~~~~~~~~~-~~~d~vid~~g~  240 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELA-KELGADLVVNPLKEDAAKFMKEKV-GGVHAAVVTAVS  240 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCSEEECTTTSCHHHHHHHHH-SSEEEEEESSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHCCCCEEecCCCccHHHHHHHHh-CCCCEEEECCCC
Confidence            36899999999999999999999999999999998887654 567653 23332  1    11111 479999999875

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=96.35  E-value=0.0025  Score=62.98  Aligned_cols=33  Identities=24%  Similarity=0.401  Sum_probs=31.6

Q ss_pred             cEEEEEccchhHHHHHHHHHHCC-CeEEEEECCH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKG-ARVVIANRTY  414 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G-~~v~i~~R~~  414 (465)
                      +++.|+|+|.+|.+++..|++.| .+|++++|++
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            57999999999999999999999 8999999997

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=96.33  E-value=0.0063  Score=64.46  Aligned_cols=74  Identities=18%  Similarity=0.152  Sum_probs=50.3

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCC-eEEEE-ECC-------------HHHHHHHHHHH---CCcc----cchhc---
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGA-RVVIA-NRT-------------YDRARELAETV---GGHA----LSLAD---  433 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~-~v~i~-~R~-------------~~~a~~la~~~---~~~~----~~~~~---  433 (465)
                      .++++||+|+ ||+|++++..|++.|+ +|+++ +|+             .++++++.+++   +...    .|+.+   
T Consensus       250 ~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~~~  329 (525)
T 3qp9_A          250 ADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDAEA  329 (525)
T ss_dssp             TTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCHHH
Confidence            5789999987 6999999999999999 58888 998             35555665555   3321    23221   


Q ss_pred             cc----cc-CCCCeeEEEecCCCCC
Q 012352          434 LE----NF-NPEDGMILANTTSIGM  453 (465)
Q Consensus       434 l~----~~-~~~~~DilInaT~~gm  453 (465)
                      +.    .. ..+..|+|||++++..
T Consensus       330 v~~~~~~i~~~g~id~vVh~AGv~~  354 (525)
T 3qp9_A          330 AARLLAGVSDAHPLSAVLHLPPTVD  354 (525)
T ss_dssp             HHHHHHTSCTTSCEEEEEECCCCCC
T ss_pred             HHHHHHHHHhcCCCcEEEECCcCCC
Confidence            11    10 2357899999998764

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=96.33  E-value=0.0042  Score=65.42  Aligned_cols=70  Identities=20%  Similarity=0.184  Sum_probs=51.4

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-HH---CCcc-cchhcccccCCCCeeEEEecCCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAE-TV---GGHA-LSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~-~~---~~~~-~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      +++.|+|+|.+|.+++..|++.|++|+++||++++++++.+ +.   +... .+.+++-+ .+.++|+||-++|.+
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~-~l~~aDvVil~Vp~~   85 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFIS-KLKRPRKVMLLVKAG   85 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHH-TSCSSCEEEECCCSS
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHh-cCCCCCEEEEEcCCh
Confidence            57999999999999999999999999999999999999887 32   1111 12222212 233467888877764

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=96.33  E-value=0.00097  Score=66.18  Aligned_cols=72  Identities=24%  Similarity=0.162  Sum_probs=50.5

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC--C--cc--cchhc---ccccCCC--CeeEEE
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG--G--HA--LSLAD---LENFNPE--DGMILA  446 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~--~--~~--~~~~~---l~~~~~~--~~DilI  446 (465)
                      +++++|||+|+ |++|++++..|.+.|++|+++.|+..+...+.+.+.  .  ..  .++.+   +.+ .+.  ++|+||
T Consensus         7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~~~~~~~d~vi   85 (357)
T 1rkx_A            7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLE-SIREFQPEIVF   85 (357)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHH-HHHHHCCSEEE
T ss_pred             hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHH-HHHhcCCCEEE
Confidence            45789999997 799999999999999999999998766555544332  1  11  12222   222 122  379999


Q ss_pred             ecCCC
Q 012352          447 NTTSI  451 (465)
Q Consensus       447 naT~~  451 (465)
                      |+++.
T Consensus        86 h~A~~   90 (357)
T 1rkx_A           86 HMAAQ   90 (357)
T ss_dssp             ECCSC
T ss_pred             ECCCC
Confidence            99875

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=96.32  E-value=0.0016  Score=65.39  Aligned_cols=69  Identities=22%  Similarity=0.172  Sum_probs=49.0

Q ss_pred             ccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       376 ~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      +..+.+|++.|+|.|.+|++++..|...|++|+.++|+.+...   +. .....+++   + .+.++|+|+.++|..
T Consensus       143 ~~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~---~~-~~~~~~l~---e-ll~~aDvV~l~~Plt  211 (343)
T 2yq5_A          143 SNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEF---EP-FLTYTDFD---T-VLKEADIVSLHTPLF  211 (343)
T ss_dssp             BCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGGG---TT-TCEECCHH---H-HHHHCSEEEECCCCC
T ss_pred             ccccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhhh---hc-cccccCHH---H-HHhcCCEEEEcCCCC
Confidence            4568899999999999999999999999999999999875411   00 11112222   2 233567777777753

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=96.31  E-value=0.012  Score=58.73  Aligned_cols=75  Identities=16%  Similarity=0.179  Sum_probs=55.6

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCCc--------ccchhcccccCCCCeeEEEec
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGH--------ALSLADLENFNPEDGMILANT  448 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~~--------~~~~~~l~~~~~~~~DilIna  448 (465)
                      ...++|.|+|+|.+|.++++.|+..|.  ++++++++.++++..+.++...        .....+. + .+.++|++|.+
T Consensus        17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~-~-~~~~aDiVvi~   94 (331)
T 4aj2_A           17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY-S-VTANSKLVIIT   94 (331)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG-G-GGTTEEEEEEC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH-H-HhCCCCEEEEc
Confidence            346799999999999999999999886  8999999999888876665311        0101122 2 35789999999


Q ss_pred             CCCCCCC
Q 012352          449 TSIGMQP  455 (465)
Q Consensus       449 T~~gm~~  455 (465)
                      ++....|
T Consensus        95 aG~~~kp  101 (331)
T 4aj2_A           95 AGARQQE  101 (331)
T ss_dssp             CSCCCCT
T ss_pred             cCCCCCC
Confidence            8765443

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.31  E-value=0.0077  Score=59.32  Aligned_cols=71  Identities=18%  Similarity=0.322  Sum_probs=52.7

Q ss_pred             CCcEEEEEc-cchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchh------ccccc-CCCCeeEEEecCC
Q 012352          380 AGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLA------DLENF-NPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~G-aGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~------~l~~~-~~~~~DilInaT~  450 (465)
                      .+++|+|+| +|++|.+++..++..|++|+++.|++++.+. +.+++.. .++..      .+.+. ....+|++||+++
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~-~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g  218 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAH-AKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVG  218 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHH-HHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESSC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECCC
Confidence            478999999 6999999999999999999999999988664 4567753 23221      11111 1246999999987


Q ss_pred             C
Q 012352          451 I  451 (465)
Q Consensus       451 ~  451 (465)
                      .
T Consensus       219 ~  219 (325)
T 3jyn_A          219 Q  219 (325)
T ss_dssp             G
T ss_pred             h
Confidence            5

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=96.31  E-value=0.0054  Score=64.30  Aligned_cols=70  Identities=19%  Similarity=0.225  Sum_probs=52.7

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH--CCcc---cchhcccccCCCCeeEEEecCCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETV--GGHA---LSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~--~~~~---~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      .++.|+|.|.+|.+++..|++.|++|+++||++++++.+.+.-  +...   .+.+++-+ .+.++|+||-+.|.+
T Consensus         5 ~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~-~l~~aDvVil~Vp~~   79 (484)
T 4gwg_A            5 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVS-KLKKPRRIILLVKAG   79 (484)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHH-TBCSSCEEEECSCSS
T ss_pred             CEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHh-hccCCCEEEEecCCh
Confidence            5799999999999999999999999999999999999887652  1111   12333322 234578888887765

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=96.30  E-value=0.0049  Score=65.37  Aligned_cols=70  Identities=29%  Similarity=0.272  Sum_probs=51.3

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ..+.++++.|+|.|.+|++++..|...|++|++++|+....  .+.+++....+++++    +.++|+|+.++|..
T Consensus       138 ~~l~g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~--~a~~~g~~~~~l~e~----~~~aDvV~l~~P~~  207 (529)
T 1ygy_A          138 TEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPA--RAAQLGIELLSLDDL----LARADFISVHLPKT  207 (529)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHH--HHHHHTCEECCHHHH----HHHCSEEEECCCCS
T ss_pred             cccCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCChh--HHHhcCcEEcCHHHH----HhcCCEEEECCCCc
Confidence            46889999999999999999999999999999999986432  234455432233222    23567888887765

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.30  E-value=0.0038  Score=60.24  Aligned_cols=69  Identities=25%  Similarity=0.270  Sum_probs=48.6

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCC-CeEEEEECCHHHHH--HHHHHHCCcc--cchhc---ccccCCCCeeEEEecCCC
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKG-ARVVIANRTYDRAR--ELAETVGGHA--LSLAD---LENFNPEDGMILANTTSI  451 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G-~~v~i~~R~~~~a~--~la~~~~~~~--~~~~~---l~~~~~~~~DilInaT~~  451 (465)
                      .++++|+|+ |++|++++..|.+.| ++|+++.|++++..  .+.. .+...  .++.+   +.+ .+.++|+||++++.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~-~~~~~~~~D~~d~~~l~~-~~~~~d~vi~~a~~   82 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRL-QGAEVVQGDQDDQVIMEL-ALNGAYATFIVTNY   82 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHH-TTCEEEECCTTCHHHHHH-HHTTCSEEEECCCH
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHH-CCCEEEEecCCCHHHHHH-HHhcCCEEEEeCCC
Confidence            478999998 799999999999999 89999999876542  2321 12222  23322   333 34568999999864

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=96.28  E-value=0.038  Score=51.85  Aligned_cols=118  Identities=19%  Similarity=0.226  Sum_probs=69.7

Q ss_pred             EEEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 012352           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (465)
Q Consensus        26 icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~~l~  105 (465)
                      |...|...+.+++...++.+...|++++|+|..   +.+..+.++.+.+..+ .+++-.      |. ..+ .++   .+
T Consensus        19 ii~vir~~~~~~~~~~~~al~~gGv~~iel~~k---~~~~~~~i~~l~~~~~-~l~vga------Gt-vl~-~d~---~~   83 (224)
T 1vhc_A           19 IVPVIALDNADDILPLADTLAKNGLSVAEITFR---SEAAADAIRLLRANRP-DFLIAA------GT-VLT-AEQ---VV   83 (224)
T ss_dssp             EEEEECCSSGGGHHHHHHHHHHTTCCEEEEETT---STTHHHHHHHHHHHCT-TCEEEE------ES-CCS-HHH---HH
T ss_pred             eEEEEeCCCHHHHHHHHHHHHHcCCCEEEEecc---CchHHHHHHHHHHhCc-CcEEee------Cc-Eee-HHH---HH
Confidence            444567889999999999998999999999953   2233445665665553 233221      22 122 233   44


Q ss_pred             HHHHhCCcEEEEeeccccchhHHHHhcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 012352          106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (465)
Q Consensus       106 ~~~~~~~~~iDiEl~~~~~~~~~l~~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKi  172 (465)
                      .+++.|+|+|=.- ..+.+..+..+   ..+..+|.-.|    ||  .|    ..++.+.|+|++|+
T Consensus        84 ~A~~aGAd~v~~p-~~d~~v~~~ar---~~g~~~i~Gv~----t~--~e----~~~A~~~Gad~vk~  136 (224)
T 1vhc_A           84 LAKSSGADFVVTP-GLNPKIVKLCQ---DLNFPITPGVN----NP--MA----IEIALEMGISAVKF  136 (224)
T ss_dssp             HHHHHTCSEEECS-SCCHHHHHHHH---HTTCCEECEEC----SH--HH----HHHHHHTTCCEEEE
T ss_pred             HHHHCCCCEEEEC-CCCHHHHHHHH---HhCCCEEeccC----CH--HH----HHHHHHCCCCEEEE
Confidence            6777899998221 22222222221   23445555444    33  34    35566899999999

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.28  E-value=0.0077  Score=59.87  Aligned_cols=71  Identities=25%  Similarity=0.360  Sum_probs=52.2

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc-cch-hc----cccc-CCCCeeEEEecCCC
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA-LSL-AD----LENF-NPEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~-~~~-~~----l~~~-~~~~~DilInaT~~  451 (465)
                      .+++|||+|+ |++|.+++..++..|++|+++.|+.++.+ ++.+++... ++. ++    +.+. ....+|++||+++.
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~-~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~  237 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATE-FVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGG  237 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHH-HHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCch
Confidence            4789999998 89999999999999999999999988864 555677532 222 11    1111 12369999999885

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=96.27  E-value=0.0081  Score=59.42  Aligned_cols=70  Identities=16%  Similarity=0.205  Sum_probs=52.7

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCC-------cccchhcccccCCCCeeEEEecCCCCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGG-------HALSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~-------~~~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      ++.|+|+|.+|.+++..|+..|.  +|++++|++++++.++..+..       ..+...+. + .+.++|+||.+++.+.
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~-~-~~~~aDvViiav~~~~   79 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDY-A-DLKGSDVVIVAAGVPQ   79 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCG-G-GGTTCSEEEECCCCCC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCCH-H-HhCCCCEEEEccCCCC
Confidence            68999999999999999999997  999999999988887654421       01111122 2 3567999999998765


Q ss_pred             C
Q 012352          454 Q  454 (465)
Q Consensus       454 ~  454 (465)
                      .
T Consensus        80 ~   80 (319)
T 1a5z_A           80 K   80 (319)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=96.27  E-value=0.011  Score=60.14  Aligned_cols=106  Identities=17%  Similarity=0.134  Sum_probs=63.7

Q ss_pred             EEEEeccHHHHHHHHHhhhccCC-CCCCC-cccccCCcEEEEEccc-hhHHHHHHHHH-HCCCeEEEEECCHH-------
Q 012352          347 LFGYNTDYVGAISAIEDGLRGRL-NVSGG-VSSALAGKLFVVIGAG-GAGKALAYGAK-AKGARVVIANRTYD-------  415 (465)
Q Consensus       347 l~G~NTD~~G~~~~l~~~~~~~~-~~~~~-~~~~l~~k~vlV~GaG-g~g~ai~~~L~-~~G~~v~i~~R~~~-------  415 (465)
                      .+-.|+--.|..+..++.+.-.. ..+.+ ......+|+|||+|++ |+|+|++.+|+ ..|+.+.++.|+.+       
T Consensus        14 ~i~~~~hp~gc~~~v~~qi~~v~~~~~~~~~~~~~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~a   93 (401)
T 4ggo_A           14 NICLNAHPQGCKKGVEDQIEYTKKRITAEVKAGAKAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYG   93 (401)
T ss_dssp             TEECCCCHHHHHHHHHHHHHHHHHHSCHHHHTTSCCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCC
T ss_pred             eeEccCCchHHHHHHHHHHHHHHhcCCcCcCcccCCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccc
Confidence            44556667777766543221000 00000 0123457999999996 99999999998 67898888876432       


Q ss_pred             -----HH---HHHHHHHCCccc----ch----------hcccccCCCCeeEEEecCCCCC
Q 012352          416 -----RA---RELAETVGGHAL----SL----------ADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       416 -----~a---~~la~~~~~~~~----~~----------~~l~~~~~~~~DilInaT~~gm  453 (465)
                           +.   .+.+++.+....    |.          +.+.+ ..++.|+|||+.+.+.
T Consensus        94 tag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~i~~vi~~i~~-~~G~IDiLVhS~A~~~  152 (401)
T 4ggo_A           94 TPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEIKAQVIEEAKK-KGIKFDLIVYSLASPV  152 (401)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHH-TTCCEEEEEECCCCSE
T ss_pred             cccchhHHHHHHHHHHcCCCceeEeCCCCCHHHHHHHHHHHHH-hcCCCCEEEEeccccc
Confidence                 12   233444454321    21          12233 5789999999998775

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.26  E-value=0.009  Score=59.38  Aligned_cols=75  Identities=20%  Similarity=0.224  Sum_probs=53.4

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCC-------c-ccc-hhcccccCCCCeeEEEec
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGG-------H-ALS-LADLENFNPEDGMILANT  448 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~-------~-~~~-~~~l~~~~~~~~DilIna  448 (465)
                      ++.+++.|+|+|.+|.++++.|+..|. +|+++++++++++..+.++..       . .+. ..+. + .+.++|+||.+
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~-a~~~aDiVIia   82 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-A-AIEGADVVIVT   82 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-G-GGTTCSEEEEC
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-H-HHCCCCEEEEc
Confidence            456789999999999999999999998 999999999887654433321       1 111 1222 3 45789999999


Q ss_pred             CCCCCCC
Q 012352          449 TSIGMQP  455 (465)
Q Consensus       449 T~~gm~~  455 (465)
                      ++....|
T Consensus        83 ag~p~k~   89 (324)
T 3gvi_A           83 AGVPRKP   89 (324)
T ss_dssp             CSCCCC-
T ss_pred             cCcCCCC
Confidence            8765443

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.24  E-value=0.0018  Score=61.97  Aligned_cols=68  Identities=19%  Similarity=0.161  Sum_probs=49.8

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHCCcc--cchh---cccccCCCCeeEEEecCCC
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAK--GARVVIANRTYDRARELAETVGGHA--LSLA---DLENFNPEDGMILANTTSI  451 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~--G~~v~i~~R~~~~a~~la~~~~~~~--~~~~---~l~~~~~~~~DilInaT~~  451 (465)
                      |+++|+|+ |++|++++..|.+.  |++|+++.|+.++++.+.. .+...  .++.   ++.+ .+.++|+||++++.
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~-~~~~~~~~D~~d~~~l~~-~~~~~d~vi~~a~~   76 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLAD-QGVEVRHGDYNQPESLQK-AFAGVSKLLFISGP   76 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHH-TTCEEEECCTTCHHHHHH-HTTTCSEEEECCCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhh-cCCeEEEeccCCHHHHHH-HHhcCCEEEEcCCC
Confidence            46899998 79999999999998  8899999999877666543 12221  2332   2333 35678999999875

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.24  E-value=0.0085  Score=59.47  Aligned_cols=74  Identities=23%  Similarity=0.231  Sum_probs=54.6

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCc------ccch---hcccccCCCCeeEEEecC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGH------ALSL---ADLENFNPEDGMILANTT  449 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~------~~~~---~~l~~~~~~~~DilInaT  449 (465)
                      +.+++.|+|+|.+|.++++.|+..|. +|+++++++++++..+.++...      ...+   .+ .+ .+.++|+||.++
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d-~~-a~~~aDvVIi~a   81 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND-YK-DLENSDVVIVTA   81 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC-GG-GGTTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC-HH-HHCCCCEEEEcC
Confidence            34689999999999999999999887 9999999998887665555321      0111   12 23 457899999998


Q ss_pred             CCCCCC
Q 012352          450 SIGMQP  455 (465)
Q Consensus       450 ~~gm~~  455 (465)
                      +....|
T Consensus        82 g~p~k~   87 (321)
T 3p7m_A           82 GVPRKP   87 (321)
T ss_dssp             SCCCCT
T ss_pred             CcCCCC
Confidence            865443

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=96.24  E-value=0.0049  Score=60.28  Aligned_cols=70  Identities=9%  Similarity=-0.014  Sum_probs=53.3

Q ss_pred             CcEEEEEccchhHHH-HHHHHHHC-CCeEE-EEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCCC
Q 012352          381 GKLFVVIGAGGAGKA-LAYGAKAK-GARVV-IANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       381 ~k~vlV~GaGg~g~a-i~~~L~~~-G~~v~-i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      ..++.|+|+|.+|+. .+..|.+. +++++ |++|+++++++++++++...  +.++.+ .+.++|+|+-|||...
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~--~~~~~~-ll~~~D~V~i~tp~~~   78 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMP--FDSIES-LAKKCDCIFLHSSTET   78 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCB--CSCHHH-HHTTCSEEEECCCGGG
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCC--cCCHHH-HHhcCCEEEEeCCcHh
Confidence            358999999999996 78888764 56655 89999999999999987543  333333 1227899999999763

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=96.23  E-value=0.0021  Score=62.41  Aligned_cols=67  Identities=13%  Similarity=0.098  Sum_probs=38.1

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCC--CeeEEEecCCCC
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPE--DGMILANTTSIG  452 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~--~~DilInaT~~g  452 (465)
                      +++|||+|+ |++|++++..|.+.|++|+++.|+..+..    .+.....+.+++.+ .+.  ++|+|||+++..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~~~~Dl~d~~~~~~-~~~~~~~d~vih~A~~~   71 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPK----FEQVNLLDSNAVHH-IIHDFQPHVIVHCAAER   71 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC----------------------CHH-HHHHHCCSEEEECC---
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCC----eEEecCCCHHHHHH-HHHhhCCCEEEECCccc
Confidence            478999998 79999999999999999999998765411    00001111112222 112  479999999764

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.23  E-value=0.00088  Score=66.91  Aligned_cols=74  Identities=16%  Similarity=0.190  Sum_probs=50.8

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHCCcc--cchh-c---ccccCCCCeeEEEecC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAK-GARVVIANRTYDRARELAETVGGHA--LSLA-D---LENFNPEDGMILANTT  449 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~-G~~v~i~~R~~~~a~~la~~~~~~~--~~~~-~---l~~~~~~~~DilInaT  449 (465)
                      .+..++|||+|+ |.+|++++..|.+. |++|++++|+.++...+.+.-+...  .++. +   +.+ .+.++|+||+++
T Consensus        21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~-~~~~~d~Vih~A   99 (372)
T 3slg_A           21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEY-HVKKCDVILPLV   99 (372)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHH-HHHHCSEEEECB
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHH-HhccCCEEEEcC
Confidence            466789999997 78999999999998 8999999998776555432111111  1332 2   222 234689999998


Q ss_pred             CCC
Q 012352          450 SIG  452 (465)
Q Consensus       450 ~~g  452 (465)
                      +..
T Consensus       100 ~~~  102 (372)
T 3slg_A          100 AIA  102 (372)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            764

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=96.22  E-value=0.0022  Score=61.89  Aligned_cols=65  Identities=29%  Similarity=0.385  Sum_probs=43.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeE-EEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARV-VIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v-~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ++.|+|+|.+|.+++..|.+. ++| .+++|++++++.+++.++. .  ..+..+ .+.++|+||-|+|-.
T Consensus         4 ~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~--~~~~~~-~~~~~DvVilav~~~   69 (276)
T 2i76_A            4 VLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-K--AATLEK-HPELNGVVFVIVPDR   69 (276)
T ss_dssp             CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-C--CCSSCC-CCC---CEEECSCTT
T ss_pred             eEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-c--cCCHHH-HHhcCCEEEEeCChH
Confidence            588999999999999999877 888 5999999999999887764 1  122222 234567777666654

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.21  E-value=0.011  Score=59.50  Aligned_cols=71  Identities=24%  Similarity=0.287  Sum_probs=53.5

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchhc---ccccCCCCeeEEEecCCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLAD---LENFNPEDGMILANTTSIG  452 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~~---l~~~~~~~~DilInaT~~g  452 (465)
                      .+.+|||+|+|++|..++..++..|++|+++.+++++.+. +.+++.. .++..+   +.+ ....+|++|++++..
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~-a~~lGa~~vi~~~~~~~~~~-~~~g~Dvvid~~g~~  268 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREA-AKALGADEVVNSRNADEMAA-HLKSFDFILNTVAAP  268 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHH-HHHHTCSEEEETTCHHHHHT-TTTCEEEEEECCSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHcCCcEEeccccHHHHHH-hhcCCCEEEECCCCH
Confidence            3689999999999999999999999999999999888654 4567753 233321   222 225799999998753

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.21  E-value=0.0066  Score=60.15  Aligned_cols=70  Identities=24%  Similarity=0.322  Sum_probs=53.1

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc-cchhc------ccccCCCCeeEEEecCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA-LSLAD------LENFNPEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~-~~~~~------l~~~~~~~~DilInaT~~  451 (465)
                      .+++|||+|+|++|.+++..++..|++|+.+.+++++.+ ++++++... ++..+      +.+ ..+.+|++|++++.
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~-~~~~lGa~~~i~~~~~~~~~~~~~-~~g~~d~vid~~g~  242 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLN-LARRLGAEVAVNARDTDPAAWLQK-EIGGAHGVLVTAVS  242 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHTTCSEEEETTTSCHHHHHHH-HHSSEEEEEESSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHH-HHHHcCCCEEEeCCCcCHHHHHHH-hCCCCCEEEEeCCC
Confidence            478999999999999999999999999999999998865 567777532 33211      111 12378999999864

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=96.20  E-value=0.0022  Score=63.89  Aligned_cols=38  Identities=24%  Similarity=0.419  Sum_probs=33.9

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHH--CCCeEEEEECCHH
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKA--KGARVVIANRTYD  415 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~--~G~~v~i~~R~~~  415 (465)
                      .+.+++|||+|+ |++|++++..|.+  .|++|++++|+..
T Consensus         7 ~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~   47 (362)
T 3sxp_A            7 ELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRS   47 (362)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCC
T ss_pred             hcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCc
Confidence            567899999987 7999999999999  8999999999654

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=96.20  E-value=0.0027  Score=61.88  Aligned_cols=69  Identities=16%  Similarity=0.232  Sum_probs=48.3

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHH-HHHHHHH--HHCCcc--cchh---cccccCCCCeeEEEecCCC
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYD-RARELAE--TVGGHA--LSLA---DLENFNPEDGMILANTTSI  451 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~-~a~~la~--~~~~~~--~~~~---~l~~~~~~~~DilInaT~~  451 (465)
                      ++++|+|+ |++|++++.+|.+.|++|+++.|+.. +++.+.+  ..+...  .++.   ++.+ .+.++|+||++++.
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~-a~~~~d~vi~~a~~   89 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVE-LMKKVDVVISALAF   89 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHH-HHTTCSEEEECCCG
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHH-HHcCCCEEEECCch
Confidence            57999997 89999999999999999999999874 4333321  112222  2332   2333 34578999999874

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=96.20  E-value=0.0066  Score=59.70  Aligned_cols=71  Identities=17%  Similarity=0.201  Sum_probs=47.6

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCH----------HHHHHHHHHHCCc--c--cchhc---ccccCCC--
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY----------DRARELAETVGGH--A--LSLAD---LENFNPE--  440 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~----------~~a~~la~~~~~~--~--~~~~~---l~~~~~~--  440 (465)
                      +++|||+|+ |++|++++..|.+.|++|++++|+.          +..+.+.+..+..  .  .++.+   +.+ .+.  
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~-~~~~~   80 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQR-LFKKY   80 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHH-HHHHC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHH-HHHhc
Confidence            478999987 7999999999999999999998743          3344443322321  1  23322   222 122  


Q ss_pred             CeeEEEecCCCC
Q 012352          441 DGMILANTTSIG  452 (465)
Q Consensus       441 ~~DilInaT~~g  452 (465)
                      ++|+|||+++..
T Consensus        81 ~~d~vih~A~~~   92 (348)
T 1ek6_A           81 SFMAVIHFAGLK   92 (348)
T ss_dssp             CEEEEEECCSCC
T ss_pred             CCCEEEECCCCc
Confidence            689999998754

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=96.19  E-value=0.0053  Score=60.99  Aligned_cols=70  Identities=24%  Similarity=0.232  Sum_probs=54.1

Q ss_pred             cEEEEEccchhHHHHHHHHHHC-CCeEE-EEECCHHHHHHHHHHHCCcc-cchhcccccCCCCeeEEEecCCCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAK-GARVV-IANRTYDRARELAETVGGHA-LSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~-G~~v~-i~~R~~~~a~~la~~~~~~~-~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      .++.|+|+|.+|+..+..|.+. +++++ +++|+++++++++++++... .+++++-+  -.++|+|+.|||...
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~--~~~~D~V~i~tp~~~   77 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFA--RDDIDGIVIGSPTST   77 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTT--CSCCCEEEECSCGGG
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhc--CCCCCEEEEeCCchh
Confidence            4799999999999999999887 56655 89999999999999887432 24444322  136899999998763

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.17  E-value=0.0078  Score=60.11  Aligned_cols=72  Identities=17%  Similarity=0.251  Sum_probs=52.7

Q ss_pred             CCcEEEEE-ccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchh------cccccCCCCeeEEEecCCC
Q 012352          380 AGKLFVVI-GAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLA------DLENFNPEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~-GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~------~l~~~~~~~~DilInaT~~  451 (465)
                      .+++|+|+ |+|++|.+++..++..|++|+++.|++++.+. +.+++.. .++..      .+.+.....+|++||+++.
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~-~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~  245 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEA-CERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGA  245 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH-HHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCG
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHH-HHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCH
Confidence            47899999 56899999999999999999999999988754 4567653 22221      1111112469999999975


Q ss_pred             C
Q 012352          452 G  452 (465)
Q Consensus       452 g  452 (465)
                      .
T Consensus       246 ~  246 (353)
T 4dup_A          246 A  246 (353)
T ss_dssp             G
T ss_pred             H
Confidence            3

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=96.16  E-value=0.0062  Score=61.85  Aligned_cols=68  Identities=22%  Similarity=0.335  Sum_probs=49.3

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      ..+.++++.|+|.|.+|++++..|...|++|++++|+.+..     ..+....+++++    +.++|+|+.++|...
T Consensus       112 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-----~~g~~~~~l~el----l~~aDvV~l~~Plt~  179 (380)
T 2o4c_A          112 ADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR-----EPDGEFVSLERL----LAEADVISLHTPLNR  179 (380)
T ss_dssp             CCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH-----STTSCCCCHHHH----HHHCSEEEECCCCCS
T ss_pred             cccCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh-----ccCcccCCHHHH----HHhCCEEEEeccCcc
Confidence            46889999999999999999999999999999999875432     112111222222    235788888887653

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.16  E-value=0.0098  Score=58.86  Aligned_cols=75  Identities=23%  Similarity=0.249  Sum_probs=53.9

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECC--HHHHHHHHHHHCCc--------ccc-hhcccccCCCCeeEEE
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT--YDRARELAETVGGH--------ALS-LADLENFNPEDGMILA  446 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~--~~~a~~la~~~~~~--------~~~-~~~l~~~~~~~~DilI  446 (465)
                      .+.+++.|+|+|.+|.++++.|+..|. +|++++++  +++++..+.++...        .+. ..+ .+ .+.++|+||
T Consensus         6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d-~~-a~~~aDvVI   83 (315)
T 3tl2_A            6 IKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSD-YA-DTADSDVVV   83 (315)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESC-GG-GGTTCSEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCC-HH-HhCCCCEEE
Confidence            346789999999999999999999998 99999999  66666554433210        011 111 12 457899999


Q ss_pred             ecCCCCCCC
Q 012352          447 NTTSIGMQP  455 (465)
Q Consensus       447 naT~~gm~~  455 (465)
                      .+++....|
T Consensus        84 iaag~p~kp   92 (315)
T 3tl2_A           84 ITAGIARKP   92 (315)
T ss_dssp             ECCSCCCCT
T ss_pred             EeCCCCCCC
Confidence            998876544

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.15  E-value=0.0016  Score=62.54  Aligned_cols=68  Identities=16%  Similarity=0.069  Sum_probs=48.5

Q ss_pred             EEEEEcc-chhHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHCCcc--cchh---cccccCCCCeeEEEecCCCC
Q 012352          383 LFVVIGA-GGAGKALAYGAKAK-GARVVIANRTYDRARELAETVGGHA--LSLA---DLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       383 ~vlV~Ga-Gg~g~ai~~~L~~~-G~~v~i~~R~~~~a~~la~~~~~~~--~~~~---~l~~~~~~~~DilInaT~~g  452 (465)
                      +|||+|+ |++|++++..|.+. |++|+++.|+++++..+... +...  .++.   .+.+ .+.++|+||++++..
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~-~v~~~~~D~~d~~~l~~-~~~~~d~vi~~a~~~   76 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRG-KVSVRQLDYFNQESMVE-AFKGMDTVVFIPSII   76 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBT-TBEEEECCTTCHHHHHH-HTTTCSEEEECCCCC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhC-CCEEEEcCCCCHHHHHH-HHhCCCEEEEeCCCC
Confidence            5899997 79999999999998 88999999998875543211 1111  2332   2333 456789999998753

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=96.15  E-value=0.0063  Score=56.29  Aligned_cols=38  Identities=18%  Similarity=0.303  Sum_probs=32.3

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHH
Q 012352          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYD  415 (465)
Q Consensus       378 ~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~  415 (465)
                      .+..+++.|+|+|.+|.+++..|++.|.+|++++|+++
T Consensus        16 ~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           16 YFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             ----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            35677899999999999999999999999999999866

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=96.15  E-value=0.01  Score=59.29  Aligned_cols=73  Identities=22%  Similarity=0.203  Sum_probs=55.8

Q ss_pred             cCCcEEEEEccchhHH-HHHHHHHHC-CCeE-EEEECCHHHHHHHHHHHCCcc-cchhcccccCCCCeeEEEecCCCCC
Q 012352          379 LAGKLFVVIGAGGAGK-ALAYGAKAK-GARV-VIANRTYDRARELAETVGGHA-LSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~-ai~~~L~~~-G~~v-~i~~R~~~~a~~la~~~~~~~-~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      .+..++.|+|+|.+|+ ..+..|.+. +++| .|++|+++++++++++++... .+++++-+  -.++|+|+.|||-..
T Consensus        25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~--~~~~D~V~i~tp~~~  101 (350)
T 3rc1_A           25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLE--RDDVDAVYVPLPAVL  101 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHT--CTTCSEEEECCCGGG
T ss_pred             CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhc--CCCCCEEEECCCcHH
Confidence            3445899999999998 788888887 5665 588999999999999998643 34544432  246899999998653

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=96.14  E-value=0.0051  Score=59.89  Aligned_cols=69  Identities=22%  Similarity=0.188  Sum_probs=52.2

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchh---cccccCCCCeeEEEecCCC
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLA---DLENFNPEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~---~l~~~~~~~~DilInaT~~  451 (465)
                      .+++|+|+|+ |++|.+++..++..|++|+++.|++++.+.+ .+++.. .++..   ++.+ .+..+|++|| ++.
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~ga~~~~~~~~~~~~~~-~~~~~d~vid-~g~  198 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALP-LALGAEEAATYAEVPERAK-AWGGLDLVLE-VRG  198 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHH-HHTTCSEEEEGGGHHHHHH-HTTSEEEEEE-CSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HhcCCCEEEECCcchhHHH-HhcCceEEEE-CCH
Confidence            4789999998 8999999999999999999999998886554 567653 23332   2222 2367999999 764

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=96.14  E-value=0.0043  Score=62.23  Aligned_cols=71  Identities=15%  Similarity=0.152  Sum_probs=50.2

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEE----------CC---------HHHHHHHHHHHC---Ccc-c-----
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIAN----------RT---------YDRARELAETVG---GHA-L-----  429 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~----------R~---------~~~a~~la~~~~---~~~-~-----  429 (465)
                      +.+.+|+|+|+||+|..++..|+..|+ +++|++          |.         ..|++.+++.+.   ... +     
T Consensus        34 L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~  113 (346)
T 1y8q_A           34 LRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTE  113 (346)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECS
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEec
Confidence            567899999999999999999999999 999994          43         247777766653   211 1     


Q ss_pred             chhc-ccccCCCCeeEEEecCC
Q 012352          430 SLAD-LENFNPEDGMILANTTS  450 (465)
Q Consensus       430 ~~~~-l~~~~~~~~DilInaT~  450 (465)
                      .+.+ ..+ .+.++|+||+|+-
T Consensus       114 ~~~~~~~~-~~~~~dvVv~~~d  134 (346)
T 1y8q_A          114 DIEKKPES-FFTQFDAVCLTCC  134 (346)
T ss_dssp             CGGGCCHH-HHTTCSEEEEESC
T ss_pred             ccCcchHH-HhcCCCEEEEcCC
Confidence            1111 112 2457899999863

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=96.14  E-value=0.0052  Score=58.49  Aligned_cols=40  Identities=20%  Similarity=0.243  Sum_probs=35.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEEC--CHHHHHHHHH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANR--TYDRARELAE  422 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R--~~~~a~~la~  422 (465)
                      ++.|+|+|.+|.+++..|.+.|++|++++|  ++++.+.+.+
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~   43 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERART   43 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHH
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHH
Confidence            588999999999999999999999999999  7777776654

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=96.14  E-value=0.0032  Score=62.10  Aligned_cols=74  Identities=16%  Similarity=0.147  Sum_probs=47.1

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH-CCcccch--hcccccCCCCeeEEEecCCCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV-GGHALSL--ADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~-~~~~~~~--~~l~~~~~~~~DilInaT~~g  452 (465)
                      +.+++|||+|+ |++|++++..|.+.|++|++++|+........+.+ ....+.+  .++.+..+.++|+||++++..
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vih~A~~~  102 (343)
T 2b69_A           25 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPA  102 (343)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCSCC
T ss_pred             cCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhhccCCceEEEeCccCChhhcCCCEEEECcccc
Confidence            56789999998 79999999999999999999998643211111111 1111111  122221456789999998764

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=96.13  E-value=0.001  Score=66.36  Aligned_cols=40  Identities=20%  Similarity=0.151  Sum_probs=36.7

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHH
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDR  416 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~  416 (465)
                      ..+.++++.|+|.|.+|++++..|...|++|++++|+.++
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~  181 (331)
T 1xdw_A          142 KEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIK  181 (331)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccH
Confidence            4688999999999999999999999999999999998654

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=95.12  E-value=0.00089  Score=61.92  Aligned_cols=68  Identities=16%  Similarity=0.195  Sum_probs=47.5

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ..++++.|+|+|.+|++++..|.+.|.+|++++|+.+ .+.+.+ .+...   .+..+ .+.++|+||.++|..
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~-~g~~~---~~~~~-~~~~aDvVilav~~~   84 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLP-RGAEV---LCYSE-AASRSDVIVLAVHRE   84 (201)
Confidence            4567899999999999999999999999999999876 444432 12111   12222 334577777777643

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=96.12  E-value=0.0011  Score=60.54  Aligned_cols=66  Identities=15%  Similarity=0.047  Sum_probs=45.8

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCCcccchh---cccccCCCCeeEEEecCCCC
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGHALSLA---DLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~~~~~~~---~l~~~~~~~~DilInaT~~g  452 (465)
                      +++++|+|+ |++|++++..|.+.|.  +|+++.|++.+ .  .........++.   ++.+ .+  .|+|||+++..
T Consensus         5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~-~--~~~~~~~~~D~~~~~~~~~-~~--~d~vi~~a~~~   76 (215)
T 2a35_A            5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-E--HPRLDNPVGPLAELLPQLD-GS--IDTAFCCLGTT   76 (215)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-C--CTTEECCBSCHHHHGGGCC-SC--CSEEEECCCCC
T ss_pred             CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc-c--CCCceEEeccccCHHHHHH-hh--hcEEEECeeec
Confidence            578999996 7999999999999998  99999998764 0  000000112332   2333 23  89999998864

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.11  E-value=0.0077  Score=61.18  Aligned_cols=72  Identities=21%  Similarity=0.371  Sum_probs=53.2

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCcccchhc-------cccc-CCCCeeEEEecCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGHALSLAD-------LENF-NPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~~~~~~~-------l~~~-~~~~~DilInaT~  450 (465)
                      .+.+|||+|+|++|..++..++..|+ +|+.+.+++++.+ ++++++...+++.+       +.+. ....+|++|++++
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~-~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g  263 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLK-LLSDAGFETIDLRNSAPLRDQIDQILGKPEVDCGVDAVG  263 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHH-HHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHH-HHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCEEEECCC
Confidence            47899999999999999999988999 9999999988864 45677754333211       1111 1126999999997


Q ss_pred             CC
Q 012352          451 IG  452 (465)
Q Consensus       451 ~g  452 (465)
                      ..
T Consensus       264 ~~  265 (398)
T 2dph_A          264 FE  265 (398)
T ss_dssp             TT
T ss_pred             Cc
Confidence            53

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=96.10  E-value=0.0047  Score=64.40  Aligned_cols=74  Identities=24%  Similarity=0.201  Sum_probs=54.1

Q ss_pred             ccCC-cEEEEEccchhHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHCCccc--chhcccccCCCCeeEEEec
Q 012352          378 ALAG-KLFVVIGAGGAGKALAYGAKAK------GARVVIANRTYDRARELAETVGGHAL--SLADLENFNPEDGMILANT  448 (465)
Q Consensus       378 ~l~~-k~vlV~GaGg~g~ai~~~L~~~------G~~v~i~~R~~~~a~~la~~~~~~~~--~~~~l~~~~~~~~DilIna  448 (465)
                      .+++ |++.|||.|-+|.+++..|.+.      |.+|++.+|+..++.+.+.+.+....  ...+..+ .+.++|+||.+
T Consensus        50 ~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aE-Aa~~ADVVILa  128 (525)
T 3fr7_A           50 AFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWE-TVSGSDLVLLL  128 (525)
T ss_dssp             HTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHH-HHHHCSEEEEC
T ss_pred             HhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHH-HHhcCCEEEEC
Confidence            3678 9999999999999999999998      89999998887666677776664321  0112222 23457888888


Q ss_pred             CCCC
Q 012352          449 TSIG  452 (465)
Q Consensus       449 T~~g  452 (465)
                      +|..
T Consensus       129 VP~~  132 (525)
T 3fr7_A          129 ISDA  132 (525)
T ss_dssp             SCHH
T ss_pred             CChH
Confidence            8754

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.10  E-value=0.017  Score=57.84  Aligned_cols=70  Identities=23%  Similarity=0.293  Sum_probs=52.9

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc-cchh--c----cccc-CCCCeeEEEecCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA-LSLA--D----LENF-NPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~-~~~~--~----l~~~-~~~~~DilInaT~  450 (465)
                      .+++|||+|+|++|.+++..++..|++|+++.+++++.+. +++++... ++.+  +    +.+. ....+|++|++++
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~-~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g  266 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDR-AFALGADHGINRLEEDWVERVYALTGDRGADHILEIAG  266 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEETT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHH-HHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC
Confidence            4789999999999999999999999999999999888655 56787532 2211  1    1111 1236999999988

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=96.09  E-value=0.013  Score=57.54  Aligned_cols=70  Identities=23%  Similarity=0.321  Sum_probs=50.2

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCCcc-------cchhcccccCCCCeeEEEecCCCCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGHA-------LSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~~~-------~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      ++.|+|+|.+|.+++..|+..|.  +|+++++++++++..+.++....       +...+. + .+.++|+||.+++...
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~-~-a~~~aDvVIi~~~~~~   79 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGH-S-ELADAQVVILTAGANQ   79 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECG-G-GGTTCSEEEECC----
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCH-H-HhCCCCEEEEcCCCCC
Confidence            68999999999999999999997  89999999998877666654211       111122 2 4578999999997654


Q ss_pred             C
Q 012352          454 Q  454 (465)
Q Consensus       454 ~  454 (465)
                      .
T Consensus        80 ~   80 (304)
T 2v6b_A           80 K   80 (304)
T ss_dssp             -
T ss_pred             C
Confidence            3

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=96.09  E-value=0.0095  Score=59.15  Aligned_cols=72  Identities=18%  Similarity=0.198  Sum_probs=53.6

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHCCc-ccchhc----cccc-CCCCeeEEEecCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAK--GARVVIANRTYDRARELAETVGGH-ALSLAD----LENF-NPEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~--G~~v~i~~R~~~~a~~la~~~~~~-~~~~~~----l~~~-~~~~~DilInaT~~  451 (465)
                      .+++|||+|+|++|..++..++..  |++|+++.+++++.+ ++++++.. .++..+    +.+. ....+|++|++++.
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~-~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~  248 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRD-FALELGADYVSEMKDAESLINKLTDGLGASIAIDLVGT  248 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHH-HHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-HHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCCC
Confidence            578999999999999999999888  999999999988865 45567753 334322    1111 12369999999875


Q ss_pred             C
Q 012352          452 G  452 (465)
Q Consensus       452 g  452 (465)
                      .
T Consensus       249 ~  249 (344)
T 2h6e_A          249 E  249 (344)
T ss_dssp             H
T ss_pred             h
Confidence            3

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.09  E-value=0.017  Score=58.57  Aligned_cols=72  Identities=22%  Similarity=0.235  Sum_probs=53.4

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCcccchhc-------cccc-CCCCeeEEEecCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGHALSLAD-------LENF-NPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~~~~~~~-------l~~~-~~~~~DilInaT~  450 (465)
                      .+++|+|+|+|++|..++..++..|+ +|+++.+++++.+ ++++++...+++.+       +.+. ....+|++|++++
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~-~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G  263 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLA-HAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVG  263 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHH-HHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHH-HHHHcCCcEEccCCcchHHHHHHHHhCCCCCCEEEECCC
Confidence            47899999999999999999999999 7999999988855 45678764433221       1111 1236999999997


Q ss_pred             CC
Q 012352          451 IG  452 (465)
Q Consensus       451 ~g  452 (465)
                      ..
T Consensus       264 ~~  265 (398)
T 1kol_A          264 FE  265 (398)
T ss_dssp             TT
T ss_pred             Cc
Confidence            53

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=96.09  E-value=0.01  Score=58.60  Aligned_cols=70  Identities=24%  Similarity=0.279  Sum_probs=54.6

Q ss_pred             cEEEEEccchhHHHHHHHHHHC-CCeEE-EEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAK-GARVV-IANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~-G~~v~-i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      .++.|+|+|.+|+..+..|.+. +++++ +++|+++++++++++++....+++++-+  -.++|+|+.|||...
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~D~V~i~tp~~~   75 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCEVRTIDAIEA--AADIDAVVICTPTDT   75 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCEECCHHHHHH--CTTCCEEEECSCGGG
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCCcCCHHHHhc--CCCCCEEEEeCCchh
Confidence            4799999999999999999886 56655 8999999999999998755334444322  136899999998753

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.09  E-value=0.0046  Score=57.92  Aligned_cols=68  Identities=16%  Similarity=0.149  Sum_probs=51.2

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCccc--ch---hcccccCCCCeeEEEecCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL--SL---ADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~--~~---~~l~~~~~~~~DilInaT~~  451 (465)
                      .++++|+|+|.+|+.++..|.+.|. |++++|++++.+.+.  .+...+  +.   +.+.+..+.++|.+|.+|+-
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~--~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~   81 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR--SGANFVHGDPTRVSDLEKANVRGARAVIVDLES   81 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH--TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSC
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh--cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCC
Confidence            4689999999999999999999999 999999999887765  332221  22   22333246789999999874

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.09  E-value=0.009  Score=59.77  Aligned_cols=71  Identities=21%  Similarity=0.262  Sum_probs=53.1

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchh---cccccCCCCeeEEEecCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLA---DLENFNPEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~---~l~~~~~~~~DilInaT~~  451 (465)
                      .+++|||+|+|++|..++..++..|++|+++.|++++.+. +++++.. .++..   ++.+...+.+|++|++++.
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~-~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~  253 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKRED-AMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASS  253 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHH-HHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH-HHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCC
Confidence            4689999999999999999999999999999998887654 4567754 23332   2111012479999999976

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=96.09  E-value=0.011  Score=59.23  Aligned_cols=72  Identities=15%  Similarity=0.235  Sum_probs=53.2

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHCCc-ccchh-----cccccC-CCCeeEEEecCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAK-GARVVIANRTYDRARELAETVGGH-ALSLA-----DLENFN-PEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~-G~~v~i~~R~~~~a~~la~~~~~~-~~~~~-----~l~~~~-~~~~DilInaT~~  451 (465)
                      .+.+|||+|+|++|..++..++.. |++|+++.+++++.+. +++++.. .++..     .+.+.. ...+|++|++++.
T Consensus       186 ~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~-~~~lGa~~vi~~~~~~~~~v~~~~~g~g~Dvvid~~G~  264 (359)
T 1h2b_A          186 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKL-AERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGS  264 (359)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHH-HHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH-HHHhCCCEEEeccchHHHHHHHHhCCCCCcEEEECCCC
Confidence            468999999999999999999888 9999999999888654 4578753 23332     122211 2269999999875


Q ss_pred             C
Q 012352          452 G  452 (465)
Q Consensus       452 g  452 (465)
                      .
T Consensus       265 ~  265 (359)
T 1h2b_A          265 Q  265 (359)
T ss_dssp             H
T ss_pred             c
Confidence            3

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=96.09  E-value=0.011  Score=58.11  Aligned_cols=69  Identities=17%  Similarity=0.264  Sum_probs=52.4

Q ss_pred             CCcEEEEEc-cchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchhc---ccccCCCCeeEEEecCCC
Q 012352          380 AGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLAD---LENFNPEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~G-aGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~~---l~~~~~~~~DilInaT~~  451 (465)
                      .+.+|+|+| +|++|.+++..++..|++|+.+.++ ++ .+++++++.. .++..+   +.+ ....+|++|++++.
T Consensus       152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~-~~-~~~~~~lGa~~~i~~~~~~~~~~-~~~g~D~v~d~~g~  225 (321)
T 3tqh_A          152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASK-RN-HAFLKALGAEQCINYHEEDFLLA-ISTPVDAVIDLVGG  225 (321)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECH-HH-HHHHHHHTCSEEEETTTSCHHHH-CCSCEEEEEESSCH
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEecc-ch-HHHHHHcCCCEEEeCCCcchhhh-hccCCCEEEECCCc
Confidence            478999997 7999999999999999998888754 44 6778888864 333322   333 45679999999874

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=96.08  E-value=0.0063  Score=60.75  Aligned_cols=70  Identities=17%  Similarity=0.120  Sum_probs=55.1

Q ss_pred             cEEEEEccchhHHHHHHHHHHC-CCe-EEEEECCHHHHHHHHHHHCCcc-cchhcccccCCCCeeEEEecCCCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAK-GAR-VVIANRTYDRARELAETVGGHA-LSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~-G~~-v~i~~R~~~~a~~la~~~~~~~-~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      .++.|+|+|.+|+..+..|.+. +++ +.+++|+++++++++++++... -+++++-+  -.++|+|+.|||...
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~--~~~~D~V~i~tp~~~   78 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLA--REDVEMVIITVPNDK   78 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHH--CSSCCEEEECSCTTS
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhc--CCCCCEEEEeCChHH
Confidence            4799999999999999999877 666 5589999999999999987543 24444322  146899999999764

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=96.08  E-value=0.0043  Score=62.14  Aligned_cols=70  Identities=16%  Similarity=0.191  Sum_probs=49.1

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc-cchhcc-cccCCCCeeEEEecCCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA-LSLADL-ENFNPEDGMILANTTSIG  452 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~-~~~~~l-~~~~~~~~DilInaT~~g  452 (465)
                      .+++.|+|.|-+|.+++..|.+.|.+|++++|++++.+.+ .+++... .+.+++ .+ ....+|+||-|+|..
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a-~~~G~~~~~~~~e~~~~-a~~~aDlVilavP~~   79 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSA-VDEGFDVSADLEATLQR-AAAEDALIVLAVPMT   79 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHH-HHTTCCEESCHHHHHHH-HHHTTCEEEECSCHH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCeeeCCHHHHHHh-cccCCCEEEEeCCHH
Confidence            3579999999999999999999999999999999887764 3444321 122221 11 112357888887753

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.08  E-value=0.0071  Score=60.95  Aligned_cols=71  Identities=21%  Similarity=0.253  Sum_probs=54.1

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCc-ccchhc--------ccccCCCCeeEEEecC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGH-ALSLAD--------LENFNPEDGMILANTT  449 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~-~~~~~~--------l~~~~~~~~DilInaT  449 (465)
                      .+.+|||+|+|++|.+++..++..|+ +|+++.+++++.+ ++++++.. .++..+        +.+...+.+|++|+++
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~-~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~  271 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYE-TAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECI  271 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHH-HHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH-HHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECC
Confidence            47899999999999999999999999 8999999988865 67778753 233321        1111223799999998


Q ss_pred             CC
Q 012352          450 SI  451 (465)
Q Consensus       450 ~~  451 (465)
                      +.
T Consensus       272 g~  273 (378)
T 3uko_A          272 GN  273 (378)
T ss_dssp             CC
T ss_pred             CC
Confidence            85

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.07  E-value=0.0019  Score=63.38  Aligned_cols=69  Identities=20%  Similarity=0.205  Sum_probs=46.4

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchh---cccccCCCCeeEEEecCCCC
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLA---DLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~---~l~~~~~~~~DilInaT~~g  452 (465)
                      .+|||+|+ |++|++++..|.+.|++|+++.|+..+.+.+.+ .+...  .++.   .+.+ .+.++|+|||+++..
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~-~~~~~~~~Dl~d~~~~~~-~~~~~d~vih~a~~~   88 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAY-LEPECRVAEMLDHAGLER-ALRGLDGVIFSAGYY   88 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGG-GCCEEEECCTTCHHHHHH-HTTTCSEEEEC----
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhcc-CCeEEEEecCCCHHHHHH-HHcCCCEEEECCccC
Confidence            37999997 799999999999999999999998776544321 12111  1332   2333 355789999998753

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=96.07  E-value=0.0067  Score=57.38  Aligned_cols=71  Identities=13%  Similarity=0.149  Sum_probs=46.5

Q ss_pred             CCcEEEEEcc-----------------chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhc-------cc
Q 012352          380 AGKLFVVIGA-----------------GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLAD-------LE  435 (465)
Q Consensus       380 ~~k~vlV~Ga-----------------Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~-------l~  435 (465)
                      +||+|||+|+                 |++|.+++.+++++|++|+++.|........  ..+...++++.       +.
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~~~--~~~~~~~~v~s~~em~~~v~   79 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPEP--HPNLSIREITNTKDLLIEMQ   79 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCCCC--CTTEEEEECCSHHHHHHHHH
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccccccC--CCCeEEEEHhHHHHHHHHHH
Confidence            3789999977                 4799999999999999999999964310000  00111122211       11


Q ss_pred             ccCCCCeeEEEecCCCCC
Q 012352          436 NFNPEDGMILANTTSIGM  453 (465)
Q Consensus       436 ~~~~~~~DilInaT~~gm  453 (465)
                      + ..+.+|++|+|+++.-
T Consensus        80 ~-~~~~~Dili~aAAvsD   96 (232)
T 2gk4_A           80 E-RVQDYQVLIHSMAVSD   96 (232)
T ss_dssp             H-HGGGCSEEEECSBCCS
T ss_pred             H-hcCCCCEEEEcCcccc
Confidence            2 3467899999998764

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.06  E-value=0.011  Score=58.49  Aligned_cols=75  Identities=19%  Similarity=0.259  Sum_probs=54.0

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCC--c----ccch-hcccccCCCCeeEEEecCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGG--H----ALSL-ADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~--~----~~~~-~~l~~~~~~~~DilInaT~~  451 (465)
                      .++|.|+|+|.+|.++++.|+..|.  +|+++++++++++..+..+..  .    ...+ .+..+ .+.++|+||.++|.
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~-al~~aDvViia~~~   84 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYD-DCRDADLVVICAGA   84 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGG-GTTTCSEEEECCSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHH-HhCCCCEEEEcCCC
Confidence            3689999999999999999988784  899999999877765444321  0    0001 11123 46789999999998


Q ss_pred             CCCCC
Q 012352          452 GMQPK  456 (465)
Q Consensus       452 gm~~~  456 (465)
                      +..+.
T Consensus        85 ~~~~g   89 (316)
T 1ldn_A           85 NQKPG   89 (316)
T ss_dssp             CCCTT
T ss_pred             CCCCC
Confidence            77554

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=96.06  E-value=0.0064  Score=63.67  Aligned_cols=70  Identities=17%  Similarity=0.175  Sum_probs=51.1

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-HH---CCcc-cchhcccccCCCCeeEEEecCCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAE-TV---GGHA-LSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~-~~---~~~~-~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      .++.|+|+|.+|.+++..|++.|++|++++|++++++++.+ +.   +... .+.+++-+ .+.++|+||-++|.+
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~-~l~~aDvVilaVp~~   77 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVS-KLKKPRRIILLVKAG   77 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHH-HBCSSCEEEECSCTT
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHh-hccCCCEEEEeCCCh
Confidence            36899999999999999999999999999999999998876 31   2111 12222211 124578888888765

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=96.06  E-value=0.0046  Score=60.89  Aligned_cols=69  Identities=20%  Similarity=0.265  Sum_probs=49.7

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEEC--CHHHHHHHHHHHC----C------cccchhcccccCCCCeeEEEecCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANR--TYDRARELAETVG----G------HALSLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R--~~~~a~~la~~~~----~------~~~~~~~l~~~~~~~~DilInaT~  450 (465)
                      ++.|+|+|.+|.+++..|++.|.+|++++|  ++++.+.+.+...    +      ...+.++..+ ...++|+||-|++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~D~vi~~v~   80 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEK-CLENAEVVLLGVS   80 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHH-HHTTCSEEEECSC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHH-HHhcCCEEEEcCC
Confidence            589999999999999999999999999999  9988887765321    0      0011112222 2356789998887


Q ss_pred             CC
Q 012352          451 IG  452 (465)
Q Consensus       451 ~g  452 (465)
                      ..
T Consensus        81 ~~   82 (335)
T 1txg_A           81 TD   82 (335)
T ss_dssp             GG
T ss_pred             hH
Confidence            54

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=96.06  E-value=0.014  Score=57.92  Aligned_cols=70  Identities=21%  Similarity=0.311  Sum_probs=52.4

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchhc------cccc-CCCCeeEEEecCC
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLAD------LENF-NPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~~------l~~~-~~~~~DilInaT~  450 (465)
                      .+++|+|+|+ |++|++++..++..|++|+++.|++++.+.+ .+++.. .++..+      +.+. ....+|++||+++
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~-~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g  244 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRA-KALGADETVNYTHPDWPKEVRRLTGGKGADKVVDHTG  244 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHHTCSEEEETTSTTHHHHHHHHTTTTCEEEEEESSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HhcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC
Confidence            4789999999 8999999999999999999999998887665 456643 233211      1111 1236999999998

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=96.04  E-value=0.0022  Score=61.27  Aligned_cols=67  Identities=19%  Similarity=0.202  Sum_probs=47.6

Q ss_pred             EEEEEcc-chhHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHCCcc--cchh---cccccCCCCeeEEEecCCC
Q 012352          383 LFVVIGA-GGAGKALAYGAKAK--GARVVIANRTYDRARELAETVGGHA--LSLA---DLENFNPEDGMILANTTSI  451 (465)
Q Consensus       383 ~vlV~Ga-Gg~g~ai~~~L~~~--G~~v~i~~R~~~~a~~la~~~~~~~--~~~~---~l~~~~~~~~DilInaT~~  451 (465)
                      +++|+|+ |++|++++..|.+.  |++|+++.|++++.+.+... +...  .++.   ++.+ .+.++|+|||+++.
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~D~~d~~~~~~-~~~~~d~vi~~a~~   75 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQ-GITVRQADYGDEAALTS-ALQGVEKLLLISSS   75 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHT-TCEEEECCTTCHHHHHH-HTTTCSEEEECC--
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcC-CCeEEEcCCCCHHHHHH-HHhCCCEEEEeCCC
Confidence            4899998 79999999999998  89999999998776655431 2221  2332   2333 35678999999875

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.04  E-value=0.0071  Score=58.67  Aligned_cols=68  Identities=18%  Similarity=0.156  Sum_probs=46.9

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cch--hcccccCCCCeeEEEecCCCCC
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSL--ADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~--~~l~~~~~~~~DilInaT~~gm  453 (465)
                      .++|||+|+ |.+|++++..|.+.|++|+++.|+..+.. +.   +...  .++  +++.+ .+.++|+|||+++...
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~---~~~~~~~Dl~~~~~~~-~~~~~d~Vih~a~~~~   74 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-IN---DYEYRVSDYTLEDLIN-QLNDVDAVVHLAATRG   74 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC---------CCEEEECCCCHHHHHH-HTTTCSEEEECCCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CC---ceEEEEccccHHHHHH-hhcCCCEEEEccccCC
Confidence            368999996 78999999999999999999999854433 32   2221  122  22333 3568899999987653

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.03  E-value=0.0085  Score=59.41  Aligned_cols=71  Identities=13%  Similarity=0.180  Sum_probs=52.1

Q ss_pred             CCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchh------ccccc-CCCCeeEEEecCC
Q 012352          380 AGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLA------DLENF-NPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~------~l~~~-~~~~~DilInaT~  450 (465)
                      .+++|+|+|+| ++|.+++..++..|++|+++.|++++.+. +.+++.. .++..      .+.+. ....+|++||+++
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~-~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g  222 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEE-LLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIG  222 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHH-HHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHH-HHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCC
Confidence            47899999997 89999999999999999999999887654 4557653 23221      11111 1236999999987


Q ss_pred             C
Q 012352          451 I  451 (465)
Q Consensus       451 ~  451 (465)
                      .
T Consensus       223 ~  223 (340)
T 3gms_A          223 G  223 (340)
T ss_dssp             H
T ss_pred             C
Confidence            4

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=96.03  E-value=0.015  Score=57.70  Aligned_cols=71  Identities=25%  Similarity=0.295  Sum_probs=52.6

Q ss_pred             CCcEEEEE-ccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc-cchh-----cccccCCCCeeEEEecCCC
Q 012352          380 AGKLFVVI-GAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA-LSLA-----DLENFNPEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~-GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~-~~~~-----~l~~~~~~~~DilInaT~~  451 (465)
                      .+++|+|+ |+|++|.+++..++..|++|+++.+++++.+. +.+++... ++..     .+.+.....+|++||+++.
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~-~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g~  227 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEW-TKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFNT  227 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHH-HHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESSCH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHH-HHhcCCcEEEECCccHHHHHHHhCCCCccEEEECCCc
Confidence            57899999 67999999999999999999999999888654 45577532 2221     1222123469999999874

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.02  E-value=0.017  Score=56.59  Aligned_cols=71  Identities=18%  Similarity=0.180  Sum_probs=51.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHC-------Cc-ccc-hhcccccCCCCeeEEEecCCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVG-------GH-ALS-LADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~-------~~-~~~-~~~l~~~~~~~~DilInaT~~  451 (465)
                      ++.|+|+|.+|.++++.|+..|.  +|+++++++++++..+-++.       .. .+. ..+ .+ .+.++|+||.+++.
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~-a~~~aDiVViaag~   79 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YS-LLKGSEIIVVTAGL   79 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GG-GGTTCSEEEECCCC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HH-HhCCCCEEEECCCC
Confidence            68999999999999999999886  89999999998764332221       11 011 112 33 46789999999887


Q ss_pred             CCCC
Q 012352          452 GMQP  455 (465)
Q Consensus       452 gm~~  455 (465)
                      ...|
T Consensus        80 ~~kp   83 (294)
T 1oju_A           80 ARKP   83 (294)
T ss_dssp             CCCS
T ss_pred             CCCC
Confidence            6443

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=96.01  E-value=0.002  Score=64.67  Aligned_cols=74  Identities=15%  Similarity=0.151  Sum_probs=50.3

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCC-CeEEEEECCHHHHHH-HHHHHCCcc--cchh---cccccCCCCeeEEEecC
Q 012352          378 ALAGKLFVVIGA-GGAGKALAYGAKAKG-ARVVIANRTYDRARE-LAETVGGHA--LSLA---DLENFNPEDGMILANTT  449 (465)
Q Consensus       378 ~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G-~~v~i~~R~~~~a~~-la~~~~~~~--~~~~---~l~~~~~~~~DilInaT  449 (465)
                      .+++++|||+|+ |++|++++..|.+.| ++|+++.|+..+..+ +...-+...  .++.   .+.+ .+.++|+||+++
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~-~~~~~d~Vih~A  107 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLAS-LQDEYDYVFHLA  107 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHH-CCSCCSEEEECC
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHH-HhhCCCEEEECC
Confidence            467889999998 789999999999999 899999998654211 100000011  1222   2333 456899999998


Q ss_pred             CCC
Q 012352          450 SIG  452 (465)
Q Consensus       450 ~~g  452 (465)
                      +..
T Consensus       108 ~~~  110 (377)
T 2q1s_A          108 TYH  110 (377)
T ss_dssp             CCS
T ss_pred             Ccc
Confidence            764

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=95.99  E-value=0.0084  Score=61.81  Aligned_cols=47  Identities=21%  Similarity=0.331  Sum_probs=40.2

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH  427 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~  427 (465)
                      .+++|+|+|+ |++|.+++..++..|++|+++.+++++.+.+ ++++..
T Consensus       220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~-~~lGa~  267 (447)
T 4a0s_A          220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAV-RALGCD  267 (447)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HhcCCC
Confidence            4789999998 9999999999999999999999998886654 667753

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.99  E-value=0.014  Score=59.96  Aligned_cols=70  Identities=19%  Similarity=0.274  Sum_probs=54.1

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCccc--c---hhcccccCCCCeeEEEecCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL--S---LADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~--~---~~~l~~~~~~~~DilInaT~~  451 (465)
                      +.+|+|+|.|..|+.++..|.+.|..|+++++++++.+.+.+ .+..++  +   .+.+....+.++|+||.+++-
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~-~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~   78 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK-FGMKVFYGDATRMDLLESAGAAKAEVLINAIDD   78 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH-TTCCCEESCTTCHHHHHHTTTTTCSEEEECCSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh-CCCeEEEcCCCCHHHHHhcCCCccCEEEECCCC
Confidence            357999999999999999999999999999999999888763 443322  2   222333346789999999874

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.98  E-value=0.015  Score=57.68  Aligned_cols=71  Identities=25%  Similarity=0.324  Sum_probs=53.1

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCc-ccchh--c----cccc-CCCCeeEEEecCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGH-ALSLA--D----LENF-NPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~-~~~~~--~----l~~~-~~~~~DilInaT~  450 (465)
                      .+++|+|+|+|++|.+++..++..|+ +|+++.|++++.+ ++.+++.. .++..  +    +.+. ....+|++|++++
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~-~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g  245 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRE-LAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSG  245 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHH-HHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH-HHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCC
Confidence            67899999999999999999999999 9999999988765 44577753 23321  1    1111 1236999999997


Q ss_pred             C
Q 012352          451 I  451 (465)
Q Consensus       451 ~  451 (465)
                      .
T Consensus       246 ~  246 (348)
T 2d8a_A          246 A  246 (348)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=95.97  E-value=0.089  Score=48.02  Aligned_cols=117  Identities=21%  Similarity=0.216  Sum_probs=75.1

Q ss_pred             EEEEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhC--CCcEEE-EeccCCCCCCCCCCHHHHH
Q 012352           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES--PVPTLF-TYRPIWEGGQYDGDENERV  101 (465)
Q Consensus        25 ~icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~--~~PiI~-T~R~~~eGG~~~~~~~~~~  101 (465)
                      .++..+...+.++..+.++.+...|+|++|+-+.. +  ...+.++.+++..  +.++-+ |+.          +.++  
T Consensus        11 ~~i~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~-~--~~~~~i~~ir~~~~~~~~ig~~~v~----------~~~~--   75 (205)
T 1wa3_A           11 KIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTV-P--DADTVIKELSFLKEKGAIIGAGTVT----------SVEQ--   75 (205)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTS-T--THHHHHHHTHHHHHTTCEEEEESCC----------SHHH--
T ss_pred             CEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCC-h--hHHHHHHHHHHHCCCCcEEEecccC----------CHHH--
Confidence            35567889999999999988888899999986542 1  2223455555543  233333 221          3322  


Q ss_pred             HHHHHHHHhCCcEEEEeeccccchhHHHHhcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 012352          102 DVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (465)
Q Consensus       102 ~~l~~~~~~~~~~iDiEl~~~~~~~~~l~~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKi  172 (465)
                        .+.+.+.|+||| +--....++.+..+   ..+..+|.-.|    ||  .|    +.++.++|+|++|+
T Consensus        76 --~~~a~~~Gad~i-v~~~~~~~~~~~~~---~~g~~vi~g~~----t~--~e----~~~a~~~Gad~vk~  130 (205)
T 1wa3_A           76 --CRKAVESGAEFI-VSPHLDEEISQFCK---EKGVFYMPGVM----TP--TE----LVKAMKLGHTILKL  130 (205)
T ss_dssp             --HHHHHHHTCSEE-ECSSCCHHHHHHHH---HHTCEEECEEC----SH--HH----HHHHHHTTCCEEEE
T ss_pred             --HHHHHHcCCCEE-EcCCCCHHHHHHHH---HcCCcEECCcC----CH--HH----HHHHHHcCCCEEEE
Confidence              456677899999 76555555544333   34778887544    33  23    55677899999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	465
d1gqna_	252	c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase	7e-72
d1sfla_	236	c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase	1e-70
d1p77a2	101	c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE	3e-28
d1vi2a2	102	c.58.1.5 (A:5-106) Putative shikimate dehydrogenas	4e-28
d1nyta2	101	c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE	4e-27
d1nvta2	110	c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE	5e-26
d1npya2	102	c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like	2e-25
d1k2wa_	256	c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s	1e-06
d1ulsa_	242	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	3e-06
d1pr9a_	244	c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie	4e-06
d1ydea1	250	c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase	4e-06
d1nffa_	244	c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob	7e-06
d1jaya_	212	c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase	7e-06
d2a4ka1	241	c.2.1.2 (A:2-242) beta-keto acyl carrier protein r	1e-05
d1hdca_	254	c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr	1e-05
d1cyda_	242	c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul	1e-05
d1hxha_	253	c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge	1e-05
d1bdba_	276	c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy	2e-05
d1p77a1	171	c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE	2e-05
d1q7ba_	243	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	3e-05
d1gpja2	159	c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle	3e-05
d1fmca_	255	c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase	5e-05
d1yb1a_	244	c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase	6e-05
d2o23a1	248	c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydr	6e-05
d2d1ya1	248	c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T	6e-05
d1xhla_	274	c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh	7e-05
d2ag5a1	245	c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR fami	8e-05
d1yxma1	297	c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re	1e-04
d1zk4a1	251	c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase	1e-04
d1vl8a_	251	c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga	1e-04
d2bgka1	268	c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de	2e-04
d1zema1	260	c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba	2e-04
d1w6ua_	294	c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr	2e-04
d1ae1a_	258	c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu	3e-04
d1oaaa_	259	c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus mus	3e-04
d1h5qa_	260	c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga	3e-04
d2h7ma1	268	c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacteri	3e-04
d1spxa_	264	c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato	4e-04
d1xkqa_	272	c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh	4e-04
d1e5qa1	182	c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase	4e-04
d1xu9a_	269	c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase	4e-04
d1xg5a_	257	c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41	5e-04
d1ooea_	235	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	5e-04
d1iy8a_	258	c.2.1.2 (A:) Levodione reductase {Corynebacterium	5e-04
d2ae2a_	259	c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu	6e-04
d2ew8a1	247	c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas	7e-04
d1xq1a_	259	c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara	7e-04
d1ja9a_	259	c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc	8e-04
d1o5ia_	234	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	8e-04
d1gega_	255	c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Kl	8e-04
d1sbya1	254	c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase	0.001
d1nyta1	170	c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE	0.001
d2c07a1	251	c.2.1.2 (A:54-304) beta-keto acyl carrier protein	0.001
d1uzma1	237	c.2.1.2 (A:9-245) beta-keto acyl carrier protein r	0.001
d1g0oa_	272	c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase	0.001
d1geea_	261	c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megat	0.002
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	0.002
d1qsga_	258	c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli	0.002
d2rhca1	257	c.2.1.2 (A:5-261) beta-keto acyl carrier protein r	0.002
d2gdza1	254	c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog	0.003

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} Length = 252

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

 Score =  225 bits (575), Expect = 7e-72
 Identities = 62/234 (26%), Positives = 110/234 (47%), Gaps = 14/234 (5%)

Query: 24  TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-----SPV 78
             I V +MG  ++ +  +      +  D++E R+D   +    +++ T  +        +
Sbjct: 16  PKIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDI 75

Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVA-REFNDSIRGKKPEK 136
           P LFT+R   EGG+        + + R A++ G  D ID+EL     +   ++       
Sbjct: 76  PLLFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHN 135

Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVH----- 191
             V++S+H++  TPS E++ + + ++QA GADI K A       DV  +   T+      
Sbjct: 136 VYVVMSNHDFHQTPSAEEMVSRLRKMQALGADIPKIAVMPQSKHDVLTLLTATLEMQQHY 195

Query: 192 SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
           +  P+I + M + G+ISR+    FG   TFG ++    SAPGQ  + DL  +  
Sbjct: 196 ADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQA--SAPGQIAVNDLRSVLM 247

>d1sfla_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Staphylococcus aureus [TaxId: 1280]} Length = 236

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Staphylococcus aureus [TaxId: 1280]

 Score =  222 bits (566), Expect = 1e-70
 Identities = 57/234 (24%), Positives = 102/234 (43%), Gaps = 15/234 (6%)

Query: 26  ICVPIMGE-SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK----ESPVPT 80
           +   I  + S+++ ++          D++E+R+D  +N    +  + + K    +     
Sbjct: 4   VVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKL 63

Query: 81  LFTYRPIWEGGQYDGDENERVDVL-RLAMELGADYIDVELQVAREFNDS---IRGKKPEK 136
           L TYR   +GG      +  ++++  LA   G D ID+E Q   +       I   +   
Sbjct: 64  LVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYN 123

Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVH----S 192
            +VI+S HN++ TP +++L  +  ++Q    + VK A    +  DV  + Q         
Sbjct: 124 KEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTM 183

Query: 193 QVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246
              ++G+ M + GLISR     FGG LT+G +      APGQ  + DL      
Sbjct: 184 DCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEP--QAPGQIDVTDLKAQVTL 235

>d1p77a2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

 Score =  105 bits (263), Expect = 3e-28
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 3/101 (2%)

Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCT 311
            ++ + G P+  SKSP++ N+          ++  L D     +    +      G + T
Sbjct: 2   DLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNIT 61

Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNT 352
            P KE A +  DE    AK   A N + +   DGKL+  NT
Sbjct: 62  SPFKERAYQLADEYSQRAKLAEACNTLKKLD-DGKLYADNT 101

>d1vi2a2 c.58.1.5 (A:5-106) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} Length = 102

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

 Score =  105 bits (262), Expect = 4e-28
 Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 4/102 (3%)

Query: 253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSC 310
            ++ G++  P+ HS SP + N+A +  G    ++   VD        +   +    G   
Sbjct: 3   YELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGV 62

Query: 311 TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNT 352
           ++P+K+ A +  DE+   AK +GA+N I+    DG L GYNT
Sbjct: 63  SMPNKQLACEYVDELTPAAKLVGAINTIVND--DGYLRGYNT 102

>d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

 Score =  102 bits (255), Expect = 4e-27
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 3/101 (2%)

Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCT 311
           + + + G P+ HSKSP ++ +  + +     +  +L    D       + S    G + T
Sbjct: 2   ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVT 61

Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNT 352
           +P KE A    DE+   A   GAVN ++R + DG+L G NT
Sbjct: 62  VPFKEEAFARADELTERAALAGAVNTLMRLE-DGRLLGDNT 101

>d1nvta2 c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 110

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 99.8 bits (248), Expect = 5e-26
 Identities = 47/106 (44%), Positives = 60/106 (56%), Gaps = 4/106 (3%)

Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFA 306
           +   TKV G+IG PV HS SPI++N AFK  G N V+V   V  +++        +    
Sbjct: 7   INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIV 66

Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNT 352
           GF+ TIPHK   +K  DE+D  A+ IGAVN I     DGK  GYNT
Sbjct: 67  GFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTIKIE--DGKAIGYNT 110

>d1npya2 c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} Length = 102

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

 Score = 97.7 bits (243), Expect = 2e-25
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 5/105 (4%)

Query: 249 MGPDTKVF-GIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAG 307
           +  DT++   + G+P   +     +N  +  +G N ++      DI    +   +    G
Sbjct: 2   INKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRG 59

Query: 308 FSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNT 352
            + ++P KE  +   DE+   A++I +VN I+    +G L  YNT
Sbjct: 60  CAVSMPFKETCMPFLDEIHPSAQAIESVNTIVND--NGFLRAYNT 102

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
           L GK  ++ G+  G G+A A     +GARV IA+   + AR  A  +G  A ++A
Sbjct: 3   LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIA 57

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

 Score = 46.2 bits (109), Expect = 3e-06
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL 431
           L  K  ++ GA  G G+A       +GAR+V  +      RE AE VG H + +
Sbjct: 3   LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVM 56

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 4e-06
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENF 437
           LAG+  +V GAG G G+       A GARVV  +RT      L     G      DL ++
Sbjct: 5   LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDW 64

Query: 438 N 438
            
Sbjct: 65  E 65

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (108), Expect = 4e-06
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLEN 436
            AGK+ VV G G G G  +       GARVVI ++     R L + + G    L D+  
Sbjct: 4   YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQ 62

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 45.1 bits (106), Expect = 7e-06
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
           S  L GK+ +V G   G G +      A+GA+VV  +   +  + +A  +   A  + 
Sbjct: 1   SGRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVH 58

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 44.7 bits (104), Expect = 7e-06
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA 428
           ++ ++ G G  GK LA      G  +V+ +R  ++A   A      A
Sbjct: 2   RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIA 48

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL-ADLEN 436
           L+GK  +V GA  G G+A       +GA +V  +R      E    +   A+++ AD+ +
Sbjct: 3   LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSD 62

Query: 437 FN 438
             
Sbjct: 63  PK 64

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
           L+GK  ++ G   G G   A  A A GARVV+A+   +     A  +G  A    
Sbjct: 3   LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQH 57

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENF 437
            +G   +V GAG G G+       A GA+VV   RT      LA+   G      DL ++
Sbjct: 3   FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDW 62

Query: 438 N 438
           +
Sbjct: 63  D 63

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
           L GK+ +V G   G G  +      +GA+V  ++      ++LA  +G  ++ + 
Sbjct: 4   LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVR 58

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
           L G+  ++ G   G G+AL     A+GA+V + +++ +R  EL    G + L + 
Sbjct: 3   LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGIV 57

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 12/104 (11%)

Query: 353 DYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANR 412
           D +G ++ ++     RLN           +  +++GAGGA K +          +V+ANR
Sbjct: 1   DGIGLVTDLQ-----RLNWL------RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANR 49

Query: 413 TYDRARELAETVGGHALSLA-DLENFNPEDGMILANTTSIGMQP 455
           T+ + +ELAE    +    A  +++   +   ++ N TS G+  
Sbjct: 50  TFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLSG 93

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} Length = 243

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

 Score = 43.2 bits (101), Expect = 3e-05
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
             GK+ +V GA  G G+A+A    A+GA+V+    + + A+ +++ +G +   L 
Sbjct: 2   FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLM 56

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 159

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKG-ARVVIANRTYDRARELAETVGGHALSLADLENF 437
           L  K  +V+GAG  GK +A     +G   V++ANRTY+RA ELA  +GG A+   +L + 
Sbjct: 22  LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDH 81

Query: 438 NPE-DGMILANTTSIGMQPKVDETPIPK 464
               D ++ A      +    D     +
Sbjct: 82  LARSDVVVSATAAPHPVIHVDDVREALR 109

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 42.3 bits (99), Expect = 5e-05
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSL-AD 433
           L GK  ++ GAG G GK +A      GA VV+++   D A  + + +   GG A +   D
Sbjct: 9   LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCD 68

Query: 434 LEN 436
           + +
Sbjct: 69  ITS 71

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (99), Expect = 6e-05
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH 427
           + G++ ++ GAG G G+  AY      +++V+ +       E A    G 
Sbjct: 5   VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL 54

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 6e-05
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH 427
           + G + V+ G   G G A A     +GA  V+ +         A+ +G +
Sbjct: 3   VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNN 52

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLEN 436
            AGK  +V G   G G+A+A     +GA V + +      +E+AE +GG      DLE+
Sbjct: 3   FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLR-PEGKEVAEAIGGAFFQ-VDLED 59

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.9 bits (98), Expect = 7e-05
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV 424
            +GK  ++ G+  G G++ A     +GA+V I  R  DR  E  + +
Sbjct: 2   FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQI 48

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 8e-05
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA 428
           L GK+ ++  A  G G+A A     +GA+V+  +    + +EL +  G   
Sbjct: 4   LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQT 54

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG 426
           L G++ +V G   G GKA+       G+ VVIA+R  +R +  A+ +  
Sbjct: 10  LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQA 58

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG 425
           S+ L GK+ ++ G   G G A+A     +GA+V+I  R  D   + A++VG
Sbjct: 1   SNRLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVG 51

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDR----ARELAETVGGHALSL-A 432
           L G++ +V G   G G  +A G    G  VV+A+R  +     A++L E  G   ++   
Sbjct: 3   LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRC 62

Query: 433 DLENFN 438
           D+ N+ 
Sbjct: 63  DVSNYE 68

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH 427
           L  K+ ++ G   G G+  A      GA+VVIA+   D  +++   +G  
Sbjct: 4   LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP 53

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSL-AD 433
             GK+ +V GAG   G A A     +G  + + +   +   +   +V   G  A S   D
Sbjct: 3   FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCD 62

Query: 434 LENFN 438
           + +  
Sbjct: 63  VTSEE 67

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAE 422
             GK+  + G G G GK +     + GA+ VIA+R  D  +  AE
Sbjct: 23  FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAE 67

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

 Score = 40.1 bits (93), Expect = 3e-04
 Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 1/52 (1%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL 429
           L G   +V G   G G A+       GARV   +R      E  E      L
Sbjct: 4   LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL 55

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 376 SSALAGKLFVVIGAG-GAGKALAYG---AKAKGARVVIANRTYDRARELAETVGG 426
           +  L   + V+ GA  G G+ALA       + G+ ++++ R+    R+L E +G 
Sbjct: 1   ADGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGA 55

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

 Score = 40.1 bits (93), Expect = 3e-04
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG 425
              K  +V G   G G A      A GA V +  R+   A E+ E VG
Sbjct: 7   FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVG 54

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} Length = 268

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 379 LAGKLFVVIGAGGA---GKALAYGAKAKGARVVIANRTYDR-ARELAETVGGHA 428
           L GK  +V G          +A  A+ +GA++V+      R  + + + +   A
Sbjct: 4   LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKA 57

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV 424
            A K+ ++ G+  G G+A A     +GA+V I  R  +R  E  + +
Sbjct: 3   FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQI 49

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALS 430
            + K  ++ G+  G G+  A     +GA V I  R+ +R  E  + +    +S
Sbjct: 3   FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVS 55

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 39.2 bits (90), Expect = 4e-04
 Identities = 16/76 (21%), Positives = 32/76 (42%)

Query: 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNP 439
           A K  +++G+G   +         G +V +A RT + A++L+  V        D+ +   
Sbjct: 1   ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAA 60

Query: 440 EDGMILANTTSIGMQP 455
            D  +  +   I + P
Sbjct: 61  LDAEVAKHDLVISLIP 76

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAE 422
           L GK  +V GA  G G+ +AY     GA VV+  R+ +  +++  
Sbjct: 12  LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVS 56

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAE 422
              +L +V GA  G G A+A     +G +VV   RT     ELA 
Sbjct: 8   WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAA 52

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.1 bits (90), Expect = 5e-04
 Identities = 12/56 (21%), Positives = 22/56 (39%)

Query: 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLE 435
           +GK+ V  G G  G A+    K  G  V+  + + +   +    V G+       +
Sbjct: 2   SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQ 57

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

 Score = 39.3 bits (91), Expect = 5e-04
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA 428
              ++ ++ G G G G+A A    A+GA++ + + + +        V   A
Sbjct: 2   FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETA 52

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 1/51 (1%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA 428
           L G   +V G   G G  +     + GA V   +R      +         
Sbjct: 6   LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG 56

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

 Score = 39.1 bits (91), Expect = 7e-04
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTY-DRARELAETVGGHALSL-ADLE 435
           L  KL V+ G   G G+A+A     +GA + IA+      A      +G   L++  D+ 
Sbjct: 3   LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVS 62

Query: 436 N 436
            
Sbjct: 63  Q 63

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 38.8 bits (90), Expect = 7e-04
 Identities = 11/53 (20%), Positives = 14/53 (26%), Gaps = 1/53 (1%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALS 430
           L  K  +V G   G G A+       GA +    R      E           
Sbjct: 6   LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQ 58

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 39.0 bits (90), Expect = 8e-04
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV 424
           S  LAGK+ +  GAG G G+ +A     +GA VV+    Y  + + AE V
Sbjct: 1   SKPLAGKVALTTGAGRGIGRGIAIELGRRGASVVV---NYGSSSKAAEEV 47

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.5 bits (89), Expect = 8e-04
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLEN 436
           +  K  +V+ A  G G+A+A     +GA V I  R  +  +       GH   + DL  
Sbjct: 2   IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRS-----GHRYVVCDLRK 55

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Length = 255

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 38.6 bits (89), Expect = 8e-04
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 382 KLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSL-ADLEN 436
           K+ +V GAG G GKA+A      G  V IA+     A+ +A  +   GGHA+++  D+ +
Sbjct: 2   KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD 61

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

 Score = 38.5 bits (89), Expect = 0.001
 Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAE 422
           L  K  + + A GG G   +     +  +  +     +    LAE
Sbjct: 3   LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAE 47

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 12/110 (10%)

Query: 353 DYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANR 412
           D VG +S +E     RL+          G   ++IGAGGA + +     +    V I NR
Sbjct: 1   DGVGLLSDLE-----RLSFI------RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNR 49

Query: 413 TYDRARELAETVGGHALSLA-DLENFNPEDGMILANTTSIGMQPKVDETP 461
           T  RA ELA+         A  ++     +  ++ N TS G+   +   P
Sbjct: 50  TVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISGDIPAIP 99

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 38.5 bits (89), Expect = 0.001
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSLA 432
              K+ +V GAG G G+ +A       + V+  +RT      + + +   G  +   A
Sbjct: 8   GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYA 65

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 237

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.8 bits (87), Expect = 0.001
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLE 435
              +  +V G   G G A+A    A G +V +      R     + + G  + + D +
Sbjct: 5   FVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVT----HRGSGAPKGLFGVEVDVTDSD 58

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 38.2 bits (88), Expect = 0.001
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 373 GGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV 424
           G  S++L GK+ +V GAG G G+ +A     +G +V++    Y  + E AE V
Sbjct: 10  GPQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIV---NYANSTESAEEV 59

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Length = 261

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

 Score = 37.8 bits (87), Expect = 0.002
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTY-DRARELAETV---GGHALSLA 432
           L GK+ V+ G+  G GK++A     + A+VV+  R+  D A  + E +   GG A+++ 
Sbjct: 5   LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVK 63

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 363 DGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRA 417
           DG++   +V       +AGK+ VV G G  GK  A   +  GARV+I       A
Sbjct: 12  DGIKRATDVM------IAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINA 60

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 3/47 (6%)

Query: 379 LAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYDRARELAE 422
           L+GK  +V G          +A     +GA +    +       + E
Sbjct: 3   LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEE 49

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 37.4 bits (86), Expect = 0.002
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 381 GKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSLA 432
            ++ +V GA  G G  +A     +G RV +  R  +  R   + +   G  A    
Sbjct: 2   SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRT 57

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (85), Expect = 0.003
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 381 GKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG 425
           GK+ +V GA  G G+A A     KGA+V + +   +   +    + 
Sbjct: 3   GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALH 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	465
d1gqna_	252	Type I 3-dehydroquinate dehydratase {Salmonella ty	100.0
d1sfla_	236	Type I 3-dehydroquinate dehydratase {Staphylococcu	100.0
d1vi2a2	102	Putative shikimate dehydrogenase YdiB {Escherichia	99.97
d1p77a2	101	Shikimate 5-dehydrogenase AroE {Haemophilus influe	99.97
d1nyta2	101	Shikimate 5-dehydrogenase AroE {Escherichia coli [	99.97
d1nvta2	110	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	99.96
d1npya2	102	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	99.96
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	99.65
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	99.63
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	99.56
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	99.55
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	99.46
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	99.25
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	99.22
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	98.59
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	98.58
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	98.56
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	98.56
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	98.53
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	98.51
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	98.51
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	98.5
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	98.48
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	98.46
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	98.45
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	98.44
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	98.43
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	98.42
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	98.42
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	98.41
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	98.4
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.39
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	98.38
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	98.37
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	98.37
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	98.34
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	98.33
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	98.32
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	98.32
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	98.32
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	98.31
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	98.31
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	98.3
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	98.29
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	98.28
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	98.28
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	98.27
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	98.26
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	98.26
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	98.25
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	98.23
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	98.23
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	98.15
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	98.14
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	98.14
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	98.09
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	98.03
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	98.02
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	98.0
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	97.97
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	97.95
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	97.94
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	97.87
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	97.84
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	97.82
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	97.78
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	97.71
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.71
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	97.7
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.66
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	97.59
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.59
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.57
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	97.54
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.53
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.52
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	97.52
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	97.49
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	97.41
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.39
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	97.38
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.38
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.37
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.35
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.34
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.33
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.29
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.27
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.25
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.25
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	97.25
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.24
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.22
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.21
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	97.21
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	97.21
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	97.21
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.2
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.19
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.19
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.19
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.19
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.19
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	97.18
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.15
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.12
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.11
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.08
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.07
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.07
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.05
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	97.04
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.0
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.96
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.95
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.93
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	96.93
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.92
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.9
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.9
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.88
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	96.88
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.87
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.86
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	96.8
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.79
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.78
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.77
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.77
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	96.75
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	96.74
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.7
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	96.63
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.62
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	96.59
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.59
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	96.54
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.48
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.45
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.45
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.45
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	96.44
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.37
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.34
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	96.32
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.27
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	96.25
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	96.24
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.23
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.19
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.19
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.18
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.16
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	96.15
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.12
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	96.06
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.03
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	96.02
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	96.01
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	95.91
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.89
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.87
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.8
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	95.78
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	95.77
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.73
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.72
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	95.62
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	95.6
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.57
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	95.56
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.54
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	95.54
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	95.45
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.33
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.17
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	95.15
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.13
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.02
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	95.01
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.01
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	94.84
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	94.83
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.82
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	94.81
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.76
d1ub3a_	211	Deoxyribose-phosphate aldolase DeoC {Thermus therm	94.72
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.68
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.68
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.64
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.59
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	94.58
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.46
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	94.46
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.43
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.38
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	94.37
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	94.31
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	94.26
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.24
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.21
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	94.19
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.08
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	94.0
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	93.97
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	93.96
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.95
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	93.85
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.76
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	93.75
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	93.71
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	93.67
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	93.63
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	93.59
d1o0ya_	251	Deoxyribose-phosphate aldolase DeoC {Thermotoga ma	93.56
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.46
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	93.44
d1xi3a_	206	Thiamin phosphate synthase {Archaeon (Pyrococcus f	93.43
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	93.24
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	93.21
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.11
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	93.02
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	92.95
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	92.93
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	92.9
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	92.87
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.8
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	92.7
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	92.7
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	92.54
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	92.45
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.37
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	92.37
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	92.27
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	92.23
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.11
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	92.01
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	91.9
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	91.79
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	91.78
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	91.77
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	91.74
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	91.7
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	91.62
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	91.55
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	91.55
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	91.54
d1ad1a_	264	Dihydropteroate synthetase {Staphylococcus aureus	91.5
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	91.31
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	91.31
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	91.28
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	91.23
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	91.18
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	91.1
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	91.05
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	91.03
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	90.59
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	90.44
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	90.38
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	90.36
d1yx1a1	250	Hypothetical protein PA2260 {Pseudomonas aeruginos	90.25
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	90.24
d1ojxa_	251	Archaeal fructose 1,6-bisphosphate aldolase {Archa	90.23
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	90.23
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	90.12
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	90.1
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	90.07
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	90.01
d2q02a1	271	Putative cytoplasmic protein STM4435 {Salmonella t	90.0
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	89.93
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	89.89
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	89.88
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	89.87
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	89.75
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	89.37
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	89.34
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	89.32
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	89.17
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	89.04
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	88.86
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	88.67
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	88.55
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	88.45
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	88.45
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	88.44
d1rqba2	303	Transcarboxylase 5S subunit, N-terminal domain {Pr	88.3
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	88.21
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	88.19
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	88.15
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	87.79
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	87.64
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	87.62
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	87.55
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	87.49
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	87.24
d1ajza_	282	Dihydropteroate synthetase {Escherichia coli [TaxI	87.17
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	87.12
d1n7ka_	234	Deoxyribose-phosphate aldolase DeoC {Archaeon Aero	87.1
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	87.09
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	87.04
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	86.99
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	86.81
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	86.64
d2ax3a2	211	Hypothetical protein TM0922, N-terminal domain {Th	86.61
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	85.93
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	85.88
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	85.6
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	85.53
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	85.16
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	85.07
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	84.97
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	84.79
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	84.73
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	84.41
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	84.34
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	84.2
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	84.02
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	84.02
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	83.81
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	83.78
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	83.61
d1tx2a_	273	Dihydropteroate synthetase {Bacillus anthracis [Ta	83.56
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.56
d1ad1a_	264	Dihydropteroate synthetase {Staphylococcus aureus	83.37
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	83.25
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	83.23
d1km4a_	212	Orotidine 5'-monophosphate decarboxylase (OMP deca	82.54
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	82.43
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	82.34
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	81.84
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	81.77
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	81.65
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	81.58
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	81.57
d1wdda1	325	Ribulose 1,5-bisphosphate carboxylase-oxygenase {R	81.3
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.23
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	80.8
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	80.12
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	80.07

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

Probab=100.00  E-value=5.4e-57  Score=436.45  Aligned_cols=233  Identities=26%  Similarity=0.412  Sum_probs=209.2

Q ss_pred             cccccCCCCCCcEEEEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHH----HHHhhC-CCcEEEEeccC
Q 012352           13 KLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIK----TLIKES-PVPTLFTYRPI   87 (465)
Q Consensus        13 ~~~~~~~~~~~~~icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~----~l~~~~-~~PiI~T~R~~   87 (465)
                      |+..-+++..+|+|||||++++.+++++++.++...++|+||||+|+|.+..+.+.+.    .+++.. ++|+|||+|++
T Consensus         5 ~v~~~~~g~g~pkIcv~l~~~~~~~~~~~~~~~~~~~aD~vE~RlD~l~~~~~~~~l~~~~~~lr~~~~~~PiI~T~R~~   84 (252)
T d1gqna_           5 TVKNLIIGEGMPKIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPLLFTFRSA   84 (252)
T ss_dssp             EETTEEETSSSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCSCTTCHHHHHHHHHHHHHHCTTSCEEEECCBG
T ss_pred             EECCEEecCCCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEEccccccCCHHHHHHHHHHHHHhcCCCCEEEEEech
Confidence            4455667789999999999999999999999988889999999999999876544443    344443 69999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CcEEEEeeccccchhHHHH-hcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHc
Q 012352           88 WEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQAS  165 (465)
Q Consensus        88 ~eGG~~~~~~~~~~~~l~~~~~~~-~~~iDiEl~~~~~~~~~l~-~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~  165 (465)
                      +|||.+++++++|+++|+.+++.| +||||||++..++....+. ..+..++++|+|||||++||+.+++.+++++|.++
T Consensus        85 ~eGG~~~~~~~~~~~ll~~~~~~~~~d~iDiEl~~~~~~~~~li~~a~~~~~~vI~S~Hdf~~TP~~~~l~~~~~~m~~~  164 (252)
T d1gqna_          85 KEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQAL  164 (252)
T ss_dssp             GGTCSBCCCHHHHHHHHHHHHHHSCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHT
T ss_pred             hhCCCCCCCHHHHHHHHHHHHHcCCCceEeccccccHHHHHHHHHHhhcCCCeEEEEecCCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999998 8999999999887766665 34568999999999999999999999999999999


Q ss_pred             CCCEEEEEeecCCHHHHHHHHHHhcc-----CCCCEEEEecCccchhhhhhccccCCccccccccCccCCCCCCCChhhH
Q 012352          166 GADIVKFATTALDITDVARVFQITVH-----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL  240 (465)
Q Consensus       166 gadivKia~~~~~~~D~~~ll~~~~~-----~~~p~i~~~MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApGQ~~~~~l  240 (465)
                      ||||+|+|+||++.+|++++++++.+     .+.|+|+||||+.|++||+++++|||++||++++++  +||||+++++|
T Consensus       165 gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~tya~~~~~--sAPGQ~~~~~l  242 (252)
T d1gqna_         165 GADIPKIAVMPQSKHDVLTLLTATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQA--SAPGQIAVNDL  242 (252)
T ss_dssp             TCSEEEEEECCSSHHHHHHHHHHHHHHHHHTCSSCCEEEECTTTTHHHHHCHHHHTCCEEECBSSSC--CSTTCCBHHHH
T ss_pred             CCCeEEEEecCCCHHHHHHHHHHHHHHHHhCCCCCEEEEecCCcchhHHHHHHHhCCceEeccCCCC--CCCCCCCHHHH
Confidence            99999999999999999999988643     378999999999999999999999999999999865  99999999999


Q ss_pred             Hhhhccc
Q 012352          241 LDLYNFR  247 (465)
Q Consensus       241 ~~~~~~~  247 (465)
                      +++++++
T Consensus       243 ~~~l~~l  249 (252)
T d1gqna_         243 RSVLMIL  249 (252)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999864

>d1sfla_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=2.8e-51  Score=392.70  Aligned_cols=220  Identities=25%  Similarity=0.421  Sum_probs=186.1

Q ss_pred             cEEEEeeccC-CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHH----hh-CCCcEEEEeccCCCCCCCCCCH
Q 012352           24 TLICVPIMGE-SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLI----KE-SPVPTLFTYRPIWEGGQYDGDE   97 (465)
Q Consensus        24 ~~icv~l~~~-t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~----~~-~~~PiI~T~R~~~eGG~~~~~~   97 (465)
                      -+||+|++.. +.++.+.+..+....++|+||||+|+|++.+.. .+..++    +. .++|+|||+|+++|||.+++++
T Consensus         2 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~D~vElRlD~l~~~~~~-~v~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~   80 (236)
T d1sfla_           2 VEVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVD-QVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTN   80 (236)
T ss_dssp             CEEEEEECCCC---CHHHHHHHHTTTTCSEEEEECTTSTTCCHH-HHHHHHHHHC---CCSEEEEECCBGGGTSCBCCCH
T ss_pred             CcEEEecCCchhHHHHHHHHHHhcCcCCCEEEEEeccccCCCHH-HHHHHHHHHHhcCCCCcEEEEEeCHHHCCCCCCCH
Confidence            4789999999 667765444444556899999999999987654 344333    22 3689999999999999999999


Q ss_pred             HHHHHHHHHHHHh-CCcEEEEeeccccchhHH---HHhcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Q 012352           98 NERVDVLRLAMEL-GADYIDVELQVAREFNDS---IRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA  173 (465)
Q Consensus        98 ~~~~~~l~~~~~~-~~~~iDiEl~~~~~~~~~---l~~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKia  173 (465)
                      ++|++++..++.. ++||||||+..+.+..+.   +...+..+++||+|||||++||+.+++.+++++|.++||||+|||
T Consensus        81 ~~~~~ll~~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~~~~vI~S~H~f~~TP~~~el~~~~~~~~~~gaDivKia  160 (236)
T d1sfla_          81 DSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLA  160 (236)
T ss_dssp             HHHHHHHHHGGGCTTCCEEEEECCTTSCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             HHHHHHHHHHHHhcCCchhhhhhcchhhHHHHHHHHHHhhcCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            9999999988876 499999999887654322   223456799999999999999999999999999999999999999


Q ss_pred             eecCCHHHHHHHHHHhcc----CCCCEEEEecCccchhhhhhccccCCccccccccCccCCCCCCCChhhHHhhhcc
Q 012352          174 TTALDITDVARVFQITVH----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (465)
Q Consensus       174 ~~~~~~~D~~~ll~~~~~----~~~p~i~~~MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApGQ~~~~~l~~~~~~  246 (465)
                      +||++.+|++++++++..    .+.|+|+||||+.|++||+++++|||++||++++++  +||||+++++|++++++
T Consensus       161 ~~~~~~~D~~~ll~~~~~~~~~~~~pii~~~MG~~G~~sRi~~~~~GS~~tya~~~~~--sAPGQ~~~~~lr~~l~~  235 (236)
T d1sfla_         161 VMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEP--QAPGQIDVTDLKAQVTL  235 (236)
T ss_dssp             ECCSSHHHHHHHHHHHHHHHHHCSSEEEEEECTGGGHHHHHTGGGGTBCEEEEBSSCC--SSTTCCBHHHHHHHHTT
T ss_pred             EecCCHHHHHHHHHHHHHHhhccCCCEEEEecCCcchHHHHHHHHhCCceEEccCCCC--CCCCCcCHHHHHHHHhh
Confidence            999999999999998643    378999999999999999999999999999999875  99999999999999874

>d1vi2a2 c.58.1.5 (A:5-106) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=3.9e-32  Score=225.97  Aligned_cols=99  Identities=30%  Similarity=0.531  Sum_probs=95.5

Q ss_pred             CcceeeecCCCccccccHHHHHHHHHHcCCCeeEecccc--ccHHHHHHHhhcCCCCeeEeccCchHHHhhhccccCHHH
Q 012352          252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVA  329 (465)
Q Consensus       252 ~~~~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~~~~A  329 (465)
                      ++++|||||+||+||+||.|||.+|+++|+|+.|.++++  ++++++++.+++.+|.|+|||||||+++++++|++++.|
T Consensus         2 k~~l~GliG~Pi~hS~SP~ihn~~f~~~gi~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVT~P~K~~~~~~~d~~~~~a   81 (102)
T d1vi2a2           2 KYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAA   81 (102)
T ss_dssp             CCEEEEEEESCCTTCSHHHHHHHHHHHTTCSEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTSTTGGGGGCSEECHHH
T ss_pred             CeEEEEEEcCCcccccCHHHHHHHHHHcCCCcEEeeEeeCchHHHHHHHHhhhhccchhhhhhHHHHHHHHhcccCCHHH
Confidence            578999999999999999999999999999999999998  479999999999999999999999999999999999999


Q ss_pred             HhccceeeEEEeccCCeEEEEec
Q 012352          330 KSIGAVNCIIRRQSDGKLFGYNT  352 (465)
Q Consensus       330 ~~~gavNtv~~~~~~g~l~G~NT  352 (465)
                      +.+||||||+++  +|+|+||||
T Consensus        82 ~~igAvNti~~~--~g~l~G~NT  102 (102)
T d1vi2a2          82 KLVGAINTIVND--DGYLRGYNT  102 (102)
T ss_dssp             HHHTCCSEEEEE--TTEEEEECH
T ss_pred             HhhCcEEEEEEE--CCEEEEeCC
Confidence            999999999987  999999998

>d1p77a2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=99.97  E-value=4.9e-32  Score=225.09  Aligned_cols=99  Identities=27%  Similarity=0.394  Sum_probs=94.4

Q ss_pred             cceeeecCCCccccccHHHHHHHHHHcCCCeeEecccc--ccHHHHHHHhhcCCCCeeEeccCchHHHhhhccccCHHHH
Q 012352          253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAK  330 (465)
Q Consensus       253 ~~~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~~~~A~  330 (465)
                      +++|||||+||+||+||.|||.+|+++|+|+.|.++++  +++.++++.+++.+|.|+|||||||+++++++|++++.|+
T Consensus         1 M~~~~viG~PI~hS~SP~ihn~~~~~~gi~~~y~~~~v~~~~~~~~~~~l~~~~~~G~nVT~P~K~~~~~~~d~~~~~a~   80 (101)
T d1p77a2           1 MDLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNITSPFKERAYQLADEYSQRAK   80 (101)
T ss_dssp             CEEEEEEESSCTTCCHHHHHHHHHHHTTCCEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHH
T ss_pred             CCEEEEeCCCcccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHhccccceeeccHHHHHHHHHhccCCHHHH
Confidence            36799999999999999999999999999999999987  5899999999989999999999999999999999999999


Q ss_pred             hccceeeEEEeccCCeEEEEec
Q 012352          331 SIGAVNCIIRRQSDGKLFGYNT  352 (465)
Q Consensus       331 ~~gavNtv~~~~~~g~l~G~NT  352 (465)
                      .+||||||+++. +|+|+|+||
T Consensus        81 ~igAvNti~~~~-~g~l~G~NT  101 (101)
T d1p77a2          81 LAEACNTLKKLD-DGKLYADNT  101 (101)
T ss_dssp             HHTCCSEEEECT-TSCEEEECC
T ss_pred             HcCeeEEEEECC-CCEEEEecC
Confidence            999999999873 899999998

>d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=6.2e-32  Score=224.42  Aligned_cols=99  Identities=30%  Similarity=0.526  Sum_probs=94.3

Q ss_pred             cceeeecCCCccccccHHHHHHHHHHcCCCeeEecccc--ccHHHHHHHhhcCCCCeeEeccCchHHHhhhccccCHHHH
Q 012352          253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAK  330 (465)
Q Consensus       253 ~~~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~~~~A~  330 (465)
                      ++.|||||+||+||+||.|||.+|+++|+|+.|.++++  +++.++++.++..+|.|+|||||||+++++++|++++.|+
T Consensus         1 M~~~~liG~pi~hS~SP~ihn~~~~~~gi~~~y~~~~v~~~~~~~~~~~l~~~~~~G~nVT~P~K~~~~~~~d~~~~~a~   80 (101)
T d1nyta2           1 METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAA   80 (101)
T ss_dssp             CCSEEEEESSCTTCSHHHHHHHHHHHHTCCCCEEEEECCTTCHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHH
T ss_pred             CCEEEEeCCCcccccCHHHHHHHHHHcCCcchhhhhcCChHhHHHHHHHhhhccchhheeehHHHHHHHHHhccCChHHH
Confidence            35799999999999999999999999999999999988  5899999999999999999999999999999999999999


Q ss_pred             hccceeeEEEeccCCeEEEEec
Q 012352          331 SIGAVNCIIRRQSDGKLFGYNT  352 (465)
Q Consensus       331 ~~gavNtv~~~~~~g~l~G~NT  352 (465)
                      .+||||||++.. +|+|+||||
T Consensus        81 ~igAvNti~~~~-~g~l~G~NT  101 (101)
T d1nyta2          81 LAGAVNTLMRLE-DGRLLGDNT  101 (101)
T ss_dssp             HHTCCSEEEECT-TSCEEEECC
T ss_pred             HhCcEEEEEECC-CCeEEEeCC
Confidence            999999999873 899999998

>d1nvta2 c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.96  E-value=8.4e-31  Score=220.79  Aligned_cols=103  Identities=46%  Similarity=0.677  Sum_probs=98.9

Q ss_pred             ccCCCcceeeecCCCccccccHHHHHHHHHHcCCCeeEecccc--ccHHHHHHHhhcCCCCeeEeccCchHHHhhhcccc
Q 012352          248 QMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEV  325 (465)
Q Consensus       248 ~~~~~~~~~~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~  325 (465)
                      +++++|++||+||+||+||+||.|||.+|+++|+|+.|.++++  ++++++++.+++.+|.|+|||||||++++++||.+
T Consensus         6 mi~~~tk~~gliG~pi~~S~SP~ihn~~~~~~gi~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~   85 (110)
T d1nvta2           6 MINAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIVGFNVTIPHKIEIMKYLDEI   85 (110)
T ss_dssp             CCCTTCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCGGGGGGHHHHHHHHTCCEEEECTTSTTGGGGGCSEE
T ss_pred             ccCCCccEEEEEcCCcccccCHHHHHHHHHHcCCcEEEeecccCHHHHHHHHHhhcccCcchhheehHHHHHHHHHhccC
Confidence            6788899999999999999999999999999999999999988  47999999998889999999999999999999999


Q ss_pred             CHHHHhccceeeEEEeccCCeEEEEec
Q 012352          326 DTVAKSIGAVNCIIRRQSDGKLFGYNT  352 (465)
Q Consensus       326 ~~~A~~~gavNtv~~~~~~g~l~G~NT  352 (465)
                      ++.|+.+||||||+++  +|+|+||||
T Consensus        86 s~~a~~igavNti~~~--~~~l~G~NT  110 (110)
T d1nvta2          86 DKDAQLIGAVNTIKIE--DGKAIGYNT  110 (110)
T ss_dssp             CHHHHHHTCCCEEEEE--TTEEEEECC
T ss_pred             CHHHHHhCcEEEEEEE--CCEEEEeCC
Confidence            9999999999999997  899999998

>d1npya2 c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=99.96  E-value=1.1e-29  Score=210.93  Aligned_cols=101  Identities=25%  Similarity=0.443  Sum_probs=96.7

Q ss_pred             ccCCCccee-eecCCCccccccHHHHHHHHHHcCCCeeEeccccccHHHHHHHhhcCCCCeeEeccCchHHHhhhccccC
Q 012352          248 QMGPDTKVF-GIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD  326 (465)
Q Consensus       248 ~~~~~~~~~-~~iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~~l~~~~~~l~~~~~~G~~vT~P~K~~v~~~~d~~~  326 (465)
                      +++++|++| +++|+|  ||+||.|||++|+++|+|+.|.++++++++++++.++..+|.|+|||||||+++++++|+++
T Consensus         1 mi~~~t~~~~~i~g~P--~s~SP~ihn~~~~~~gi~~~Y~~~~v~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~s   78 (102)
T d1npya2           1 MINKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRGCAVSMPFKETCMPFLDEIH   78 (102)
T ss_dssp             CCCTTCEEEEEECSSC--CSHHHHHHHHHHHHHTCCEEEEEECCSCHHHHHHHHHHHTCCEEEECTTCTTTTGGGCSEEC
T ss_pred             CcCCCCEEEEEEcCCc--ccCCHHHHHHHHHHcCCCeEEeeEecccHHHHHHHHhccccceeEEehhHHHHHHHHhhhCC
Confidence            467889995 899999  89999999999999999999999999999999999998999999999999999999999999


Q ss_pred             HHHHhccceeeEEEeccCCeEEEEec
Q 012352          327 TVAKSIGAVNCIIRRQSDGKLFGYNT  352 (465)
Q Consensus       327 ~~A~~~gavNtv~~~~~~g~l~G~NT  352 (465)
                      +.|+.+||||||+++  +|+|+||||
T Consensus        79 ~~a~~igAvNti~~~--~g~l~G~NT  102 (102)
T d1npya2          79 PSAQAIESVNTIVND--NGFLRAYNT  102 (102)
T ss_dssp             HHHHTTTCCCEEEEE--TTEEEEECH
T ss_pred             hhhhhcCcEEEEEEE--CCEEEEeCC
Confidence            999999999999987  899999998

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=2.2e-16  Score=141.83  Aligned_cols=96  Identities=33%  Similarity=0.421  Sum_probs=78.9

Q ss_pred             cHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc----c
Q 012352          353 DYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH----A  428 (465)
Q Consensus       353 D~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~----~  428 (465)
                      ||.||+.+|++.           +..+++|+|+|+|+||+|||++++|.+.|++|+|+||+.++++++++.+...    .
T Consensus         1 Dg~Gf~~~l~~~-----------~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~   69 (170)
T d1nyta1           1 DGVGLLSDLERL-----------SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQA   69 (170)
T ss_dssp             HHHHHHHHHHHH-----------TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEE
T ss_pred             CHhHHHHHHHHc-----------CCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccc
Confidence            899999999874           2567899999999999999999999999999999999999999999987532    2


Q ss_pred             cchhcccccCCCCeeEEEecCCCCCCCCCCCCCC
Q 012352          429 LSLADLENFNPEDGMILANTTSIGMQPKVDETPI  462 (465)
Q Consensus       429 ~~~~~l~~~~~~~~DilInaT~~gm~~~~~~~p~  462 (465)
                      .++++.   ...++|+||||||+||.+..+..|.
T Consensus        70 ~~~~~~---~~~~~dliIN~Tp~G~~~~~~~~~~  100 (170)
T d1nyta1          70 LSMDEL---EGHEFDLIINATSSGISGDIPAIPS  100 (170)
T ss_dssp             CCSGGG---TTCCCSEEEECCSCGGGTCCCCCCG
T ss_pred             cccccc---cccccceeecccccCcccCCCCCcH
Confidence            233333   2356899999999999876555443

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=99.63  E-value=4.9e-16  Score=139.27  Aligned_cols=93  Identities=29%  Similarity=0.384  Sum_probs=76.7

Q ss_pred             cHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCcccch
Q 012352          353 DYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGHALSL  431 (465)
Q Consensus       353 D~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~~~~~  431 (465)
                      ||.||..+|+..-           .. ++|+|+|+|+||+||+++++|.+.|+ +|+|+||+.++++++++.++..... 
T Consensus         1 D~~G~~~~l~~~~-----------~~-~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~-   67 (167)
T d1npya1           1 DYIAIVKLIEKYH-----------LN-KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYIN-   67 (167)
T ss_dssp             HHHHHHHHHHHTT-----------CC-TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEES-
T ss_pred             ChHHHHHHHHHcC-----------CC-CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhh-
Confidence            8999999998742           23 57899999999999999999999998 8999999999999999988654322 


Q ss_pred             hcccccCCCCeeEEEecCCCCCCCCCCCCCC
Q 012352          432 ADLENFNPEDGMILANTTSIGMQPKVDETPI  462 (465)
Q Consensus       432 ~~l~~~~~~~~DilInaT~~gm~~~~~~~p~  462 (465)
                       ..   ...++|+||||||+||.++.++.|+
T Consensus        68 -~~---~~~~~DliINaTpiGm~~~~~~~~l   94 (167)
T d1npya1          68 -SL---ENQQADILVNVTSIGMKGGKEEMDL   94 (167)
T ss_dssp             -CC---TTCCCSEEEECSSTTCTTSTTTTSC
T ss_pred             -cc---cccchhhheeccccCCccccccccc
Confidence             11   2346899999999999887666543

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.56  E-value=3.7e-15  Score=134.53  Aligned_cols=94  Identities=33%  Similarity=0.558  Sum_probs=77.3

Q ss_pred             cHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC----c-
Q 012352          353 DYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG----H-  427 (465)
Q Consensus       353 D~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~----~-  427 (465)
                      ||.||..+|++..           .++++|+|+|+|+||++|+++++|.+.| +|+|+||+.++++++++.+..    . 
T Consensus         1 D~~G~~~~l~~~~-----------~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~   68 (177)
T d1nvta1           1 DGIGARMALEEEI-----------GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKF   68 (177)
T ss_dssp             HHHHHHHHHHHHH-----------CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCH
T ss_pred             CHHHHHHHHHHhC-----------CCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhh
Confidence            8999999998754           4689999999999999999999997666 999999999999999987742    1 


Q ss_pred             --ccchhcccccCCCCeeEEEecCCCCCCCCCCC
Q 012352          428 --ALSLADLENFNPEDGMILANTTSIGMQPKVDE  459 (465)
Q Consensus       428 --~~~~~~l~~~~~~~~DilInaT~~gm~~~~~~  459 (465)
                        .+++.++.. ....+|++|||||+||.+..+.
T Consensus        69 ~~~~~~~~~~~-~~~~~dliIn~tp~g~~~~~~~  101 (177)
T d1nvta1          69 GEEVKFSGLDV-DLDGVDIIINATPIGMYPNIDV  101 (177)
T ss_dssp             HHHEEEECTTC-CCTTCCEEEECSCTTCTTCCSS
T ss_pred             hhhhhhhhhhh-ccchhhhhccCCcccccccccc
Confidence              124444544 4567899999999999876443

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=99.55  E-value=7.2e-15  Score=132.05  Aligned_cols=95  Identities=22%  Similarity=0.291  Sum_probs=70.7

Q ss_pred             cHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc--ccc
Q 012352          353 DYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH--ALS  430 (465)
Q Consensus       353 D~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~--~~~  430 (465)
                      ||.||+++|++.           +..+++|+|+|+|+||+||+++++|.+.+.+|+|+||+.++++++++.+...  ...
T Consensus         1 D~~Gf~~~l~~~-----------~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~   69 (171)
T d1p77a1           1 DGIGLVTDLQRL-----------NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQA   69 (171)
T ss_dssp             HHHHHHHHHHHT-----------TCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEE
T ss_pred             CHHHHHHHHHHc-----------CCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccch
Confidence            899999999863           2567899999999999999999999986669999999999999999998632  111


Q ss_pred             hhcccccCCCCeeEEEecCCCCCCCCCCC
Q 012352          431 LADLENFNPEDGMILANTTSIGMQPKVDE  459 (465)
Q Consensus       431 ~~~l~~~~~~~~DilInaT~~gm~~~~~~  459 (465)
                      +..... ....+|+||||||+||.+..++
T Consensus        70 ~~~~~~-~~~~~diiIN~tp~g~~~~~~~   97 (171)
T d1p77a1          70 VSMDSI-PLQTYDLVINATSAGLSGGTAS   97 (171)
T ss_dssp             EEGGGC-CCSCCSEEEECCCC-------C
T ss_pred             hhhccc-cccccceeeecccccccccccc
Confidence            111111 3567999999999999765443

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=5.3e-14  Score=127.44  Aligned_cols=96  Identities=32%  Similarity=0.504  Sum_probs=72.9

Q ss_pred             cHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHH---HHHHHHHHHCCc-
Q 012352          353 DYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYD---RARELAETVGGH-  427 (465)
Q Consensus       353 D~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~---~a~~la~~~~~~-  427 (465)
                      ||.||+++|++.           +.++++|+|+|+|+||+||+++++|...|+ +|+|+||+.+   ++..++++++.. 
T Consensus         1 D~~Gf~~~l~~~-----------~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~   69 (182)
T d1vi2a1           1 DGTGHIRAIKES-----------GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENT   69 (182)
T ss_dssp             HHHHHHHHHHHT-----------TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHc-----------CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhc
Confidence            899999999863           257889999999999999999999999999 8999999865   445566666421 


Q ss_pred             -----ccchhc---ccccCCCCeeEEEecCCCCCCCCCCCC
Q 012352          428 -----ALSLAD---LENFNPEDGMILANTTSIGMQPKVDET  460 (465)
Q Consensus       428 -----~~~~~~---l~~~~~~~~DilInaT~~gm~~~~~~~  460 (465)
                           ..++.+   +.+ .+..+|+||||||+||.+..++.
T Consensus        70 ~~~~~~~~~~~~~~~~~-~~~~~diiIN~Tp~G~~~~~~~~  109 (182)
T d1vi2a1          70 DCVVTVTDLADQQAFAE-ALASADILTNGTKVGMKPLENES  109 (182)
T ss_dssp             SCEEEEEETTCHHHHHH-HHHTCSEEEECSSTTSTTSCSCC
T ss_pred             CcceEeeecccccchhh-hhcccceeccccCCccccccchh
Confidence                 122222   222 23568999999999998764433

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.25  E-value=4.8e-12  Score=115.06  Aligned_cols=95  Identities=24%  Similarity=0.346  Sum_probs=77.1

Q ss_pred             EEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc
Q 012352          349 GYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH  427 (465)
Q Consensus       349 G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~  427 (465)
                      |+|||+.|.+..+....          +.++++|+++|+|+ ||+|++++..|+++|++|++++|+.++++++++.+...
T Consensus         1 g~~~~~~~~v~~~~~~~----------~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~   70 (191)
T d1luaa1           1 GSNTTAAAGVALVVKAA----------GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR   70 (191)
T ss_dssp             GHHHHHHHHHHHHHHHT----------TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHc----------CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhc
Confidence            78999999888876543          36899999999996 69999999999999999999999999999998877421


Q ss_pred             ------ccch---hcccccCCCCeeEEEecCCCCCC
Q 012352          428 ------ALSL---ADLENFNPEDGMILANTTSIGMQ  454 (465)
Q Consensus       428 ------~~~~---~~l~~~~~~~~DilInaT~~gm~  454 (465)
                            ..+.   +++.+ .++++|+|||++++|+.
T Consensus        71 ~~~~~~~~d~~~~~~~~~-~~~~iDilin~Ag~g~~  105 (191)
T d1luaa1          71 FKVNVTAAETADDASRAE-AVKGAHFVFTAGAIGLE  105 (191)
T ss_dssp             HTCCCEEEECCSHHHHHH-HTTTCSEEEECCCTTCC
T ss_pred             cchhhhhhhcccHHHHHH-HhcCcCeeeecCccccc
Confidence                  1222   23333 46789999999998764

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=99.22  E-value=1.2e-11  Score=109.29  Aligned_cols=76  Identities=34%  Similarity=0.553  Sum_probs=69.3

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      .++++++++|+|+|++|+.++..|...|+ +++|+||+.+++++++++++..+.+|+++.+ .+.++|+||+||+.+.
T Consensus        20 ~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~-~l~~~Divi~atss~~   96 (159)
T d1gpja2          20 GSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVD-HLARSDVVVSATAAPH   96 (159)
T ss_dssp             SCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHH-HHHTCSEEEECCSSSS
T ss_pred             CCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHH-HhccCCEEEEecCCCC
Confidence            36889999999999999999999999999 8999999999999999999988888888876 5678999999998764

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=5.7e-08  Score=90.86  Aligned_cols=76  Identities=28%  Similarity=0.357  Sum_probs=61.0

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-c--cchh---ccccc--CCCCeeEEEec
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-A--LSLA---DLENF--NPEDGMILANT  448 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~--~~~~---~l~~~--~~~~~DilIna  448 (465)
                      +++||++||+|++ |+|++++..|+++|++|++++|+.++++++++++... .  .|+.   ++++.  .+++.|+|||+
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVnn   81 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNN   81 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEEC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCCeEEEEC
Confidence            4789999999996 9999999999999999999999999999999888642 1  2332   12111  56889999999


Q ss_pred             CCCCC
Q 012352          449 TSIGM  453 (465)
Q Consensus       449 T~~gm  453 (465)
                      +++..
T Consensus        82 Ag~~~   86 (242)
T d1cyda_          82 AALVI   86 (242)
T ss_dssp             CCCCC
T ss_pred             Ccccc
Confidence            98754

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=3.4e-08  Score=92.47  Aligned_cols=76  Identities=26%  Similarity=0.441  Sum_probs=61.2

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchh---cc-------cccCCCCe
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLA---DL-------ENFNPEDG  442 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~---~l-------~~~~~~~~  442 (465)
                      +++||+++|+|++ |+|++++..|++.|++|++++|+++++++++++++...    .|+.   ++       .+ ..+..
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~-~~g~i   79 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRA-EFGEV   79 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHH-HTCSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhc-ccCCc
Confidence            4789999999986 99999999999999999999999999999999987432    2321   11       12 35789


Q ss_pred             eEEEecCCCCCC
Q 012352          443 MILANTTSIGMQ  454 (465)
Q Consensus       443 DilInaT~~gm~  454 (465)
                      |++||+++....
T Consensus        80 DilVnnAg~~~~   91 (243)
T d1q7ba_          80 DILVNNAGITRD   91 (243)
T ss_dssp             SEEEECCCCCCC
T ss_pred             ceehhhhhhccc
Confidence            999999876543

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=98.56  E-value=3.6e-08  Score=92.96  Aligned_cols=77  Identities=30%  Similarity=0.377  Sum_probs=61.5

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchh---ccccc------CCCCee
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLA---DLENF------NPEDGM  443 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~---~l~~~------~~~~~D  443 (465)
                      +|+||++||+|++ |+|++++..|++.|++|++++|+.+++++++++++...    .|+.   ++.++      ..+..|
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   81 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVD   81 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCcc
Confidence            4789999999996 99999999999999999999999999999999887532    2321   11110      346899


Q ss_pred             EEEecCCCCCC
Q 012352          444 ILANTTSIGMQ  454 (465)
Q Consensus       444 ilInaT~~gm~  454 (465)
                      ++||++++...
T Consensus        82 ilVnnAg~~~~   92 (254)
T d1hdca_          82 GLVNNAGISTG   92 (254)
T ss_dssp             EEEECCCCCCC
T ss_pred             EEEecCccccc
Confidence            99999987643

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=7.8e-08  Score=89.94  Aligned_cols=76  Identities=30%  Similarity=0.421  Sum_probs=61.4

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-c--cchh---ccccc--CCCCeeEEEec
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-A--LSLA---DLENF--NPEDGMILANT  448 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~--~~~~---~l~~~--~~~~~DilIna  448 (465)
                      .|+||++||+|++ |+|++++..|++.|++|++++|+.+++++++++++.. .  .|+.   ++++.  .+++.|++||+
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVnn   83 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNN   83 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEEC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceEEEec
Confidence            4789999999996 9999999999999999999999999999999988642 1  2332   22111  56789999999


Q ss_pred             CCCCC
Q 012352          449 TSIGM  453 (465)
Q Consensus       449 T~~gm  453 (465)
                      ++...
T Consensus        84 Ag~~~   88 (244)
T d1pr9a_          84 AAVAL   88 (244)
T ss_dssp             CCCCC
T ss_pred             ccccc
Confidence            98764

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.53  E-value=5.6e-08  Score=90.89  Aligned_cols=75  Identities=27%  Similarity=0.286  Sum_probs=60.8

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCccc--chh---cc-------cccCCCCeeE
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL--SLA---DL-------ENFNPEDGMI  444 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~--~~~---~l-------~~~~~~~~Di  444 (465)
                      .+++|++||+|++ |+|++++..|++.|++|++++|+.+++++++++++...+  |+.   ++       .+ ..+..|+
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~-~~g~iDi   80 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALA-HLGRLDG   80 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHH-HHSSCCE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHH-hcCCceE
Confidence            3689999999985 999999999999999999999999999999998875432  321   11       12 3467999


Q ss_pred             EEecCCCCC
Q 012352          445 LANTTSIGM  453 (465)
Q Consensus       445 lInaT~~gm  453 (465)
                      |||++++..
T Consensus        81 lVnnAG~~~   89 (242)
T d1ulsa_          81 VVHYAGITR   89 (242)
T ss_dssp             EEECCCCCC
T ss_pred             EEECCcccc
Confidence            999998764

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.51  E-value=6.1e-08  Score=91.33  Aligned_cols=75  Identities=31%  Similarity=0.406  Sum_probs=60.8

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchh---ccccc------CCCCeeE
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLA---DLENF------NPEDGMI  444 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~---~l~~~------~~~~~Di  444 (465)
                      |+||+++|+|++ |+|++++..|++.|++|++++|+.+++++++++++...    .|+.   ++.++      ..+..|+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDi   82 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGSIDI   82 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            679999999995 99999999999999999999999999999999997643    2321   11110      3468999


Q ss_pred             EEecCCCCC
Q 012352          445 LANTTSIGM  453 (465)
Q Consensus       445 lInaT~~gm  453 (465)
                      +||+++...
T Consensus        83 lVnnAg~~~   91 (256)
T d1k2wa_          83 LVNNAALFD   91 (256)
T ss_dssp             EEECCCCCC
T ss_pred             EEeeccccc
Confidence            999998753

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.51  E-value=8.7e-08  Score=89.74  Aligned_cols=75  Identities=24%  Similarity=0.321  Sum_probs=60.9

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchh---cc-------cccCCCCe
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLA---DL-------ENFNPEDG  442 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~---~l-------~~~~~~~~  442 (465)
                      .|+||+++|+|++ |+|++++..|++.|++|++++|+.+++++++++++...    .|+.   ++       .+ ..+..
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~-~~g~i   81 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVT-AFGGL   81 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHH-HHSCC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHH-HhCCC
Confidence            4789999999995 99999999999999999999999999999999987532    2321   11       11 34679


Q ss_pred             eEEEecCCCCC
Q 012352          443 MILANTTSIGM  453 (465)
Q Consensus       443 DilInaT~~gm  453 (465)
                      |++||+++...
T Consensus        82 dilinnAG~~~   92 (244)
T d1nffa_          82 HVLVNNAGILN   92 (244)
T ss_dssp             CEEEECCCCCC
T ss_pred             eEEEECCcccC
Confidence            99999998754

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.50  E-value=9e-08  Score=89.95  Aligned_cols=75  Identities=25%  Similarity=0.409  Sum_probs=58.4

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH----CCcc----cchh---cc-------cccC
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV----GGHA----LSLA---DL-------ENFN  438 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~----~~~~----~~~~---~l-------~~~~  438 (465)
                      +++||++||+|++ |+|++++..|++.|++|++++|+.++++++++++    +.+.    .|+.   ++       .+ .
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~-~   80 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKE-K   80 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH-H
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHH-H
Confidence            5789999999996 9999999999999999999999999988776654    3322    2321   11       11 3


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .++.|+|||++++..
T Consensus        81 ~g~iDiLVnnAG~~~   95 (251)
T d1vl8a_          81 FGKLDTVVNAAGINR   95 (251)
T ss_dssp             HSCCCEEEECCCCCC
T ss_pred             cCCCCEEEECCCCCC
Confidence            568999999998754

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=98.48  E-value=9e-08  Score=90.05  Aligned_cols=74  Identities=23%  Similarity=0.346  Sum_probs=60.7

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchh---cc-------cccCCCCee
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLA---DL-------ENFNPEDGM  443 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~---~l-------~~~~~~~~D  443 (465)
                      ++||++||+|++ |+|++++..|++.|++|++++|+.+++++++++++...    .++.   ++       .+ ..+..|
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~-~~g~iD   82 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQR-RLGTLN   82 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHH-HHCSCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHH-HhCCCC
Confidence            789999999986 99999999999999999999999999999999997542    1221   11       11 357899


Q ss_pred             EEEecCCCCC
Q 012352          444 ILANTTSIGM  453 (465)
Q Consensus       444 ilInaT~~gm  453 (465)
                      ++||++++..
T Consensus        83 ilVnnAG~~~   92 (253)
T d1hxha_          83 VLVNNAGILL   92 (253)
T ss_dssp             EEEECCCCCC
T ss_pred             eEEecccccC
Confidence            9999998754

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=98.46  E-value=1.4e-07  Score=88.64  Aligned_cols=75  Identities=28%  Similarity=0.382  Sum_probs=60.3

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC--cc----cchh---cc-------cccCCCC
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG--HA----LSLA---DL-------ENFNPED  441 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~--~~----~~~~---~l-------~~~~~~~  441 (465)
                      |+||++||+|++ |+|++++..|++.|++|++++|+.+++++++++++.  ..    .|+.   ++       .+ ..+.
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~-~~G~   82 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEK-AFGP   82 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHH-HHSS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHH-HhCC
Confidence            789999999985 999999999999999999999999999999998863  11    1221   11       12 3578


Q ss_pred             eeEEEecCCCCCC
Q 012352          442 GMILANTTSIGMQ  454 (465)
Q Consensus       442 ~DilInaT~~gm~  454 (465)
                      .|+|||+++....
T Consensus        83 iDiLVnnAg~~~~   95 (251)
T d1zk4a1          83 VSTLVNNAGIAVN   95 (251)
T ss_dssp             CCEEEECCCCCCC
T ss_pred             ceEEEeccccccc
Confidence            9999999987643

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.45  E-value=1.7e-07  Score=87.96  Aligned_cols=78  Identities=19%  Similarity=0.265  Sum_probs=61.9

Q ss_pred             ccccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC---cc----cchh---cc-------ccc
Q 012352          376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG---HA----LSLA---DL-------ENF  437 (465)
Q Consensus       376 ~~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~---~~----~~~~---~l-------~~~  437 (465)
                      .+++++|.|||+|++ |+|++++..|++.|++|++++|+.++++++++++..   +.    .|+.   ++       .+ 
T Consensus         5 ~f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~-   83 (251)
T d2c07a1           5 YYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILT-   83 (251)
T ss_dssp             CCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH-
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH-
Confidence            367899999999995 999999999999999999999999999999888742   21    1221   11       12 


Q ss_pred             CCCCeeEEEecCCCCCC
Q 012352          438 NPEDGMILANTTSIGMQ  454 (465)
Q Consensus       438 ~~~~~DilInaT~~gm~  454 (465)
                      ..+..|++||+++....
T Consensus        84 ~~g~iDilvnnag~~~~  100 (251)
T d2c07a1          84 EHKNVDILVNNAGITRD  100 (251)
T ss_dssp             HCSCCCEEEECCCCCCC
T ss_pred             hcCCceeeeeccccccc
Confidence            45789999999987654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.8e-07  Score=87.47  Aligned_cols=77  Identities=19%  Similarity=0.340  Sum_probs=61.9

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---c-------cccC
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLAD---L-------ENFN  438 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l-------~~~~  438 (465)
                      .++.||.++|+|++ |+|++++..|++.|++|++++|+.++++++++++.   .+.    .|+.+   +       .+ .
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~-~   81 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKA-E   81 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH-H
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH-H
Confidence            46889999999996 99999999999999999999999999999988774   221    23221   1       12 4


Q ss_pred             CCCeeEEEecCCCCCC
Q 012352          439 PEDGMILANTTSIGMQ  454 (465)
Q Consensus       439 ~~~~DilInaT~~gm~  454 (465)
                      .+..|++||+++.+..
T Consensus        82 ~g~idilinnag~~~~   97 (244)
T d1yb1a_          82 IGDVSILVNNAGVVYT   97 (244)
T ss_dssp             TCCCSEEEECCCCCCC
T ss_pred             cCCCceeEeecccccc
Confidence            5789999999998864

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=98.43  E-value=1.9e-07  Score=87.97  Aligned_cols=77  Identities=21%  Similarity=0.186  Sum_probs=60.5

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchh---cc-------cccC
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLA---DL-------ENFN  438 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~---~l-------~~~~  438 (465)
                      ++|+||++||+|++ |+|++++..|+++|++|++++|+.++++++++++.   ...    .|+.   ++       .+ .
T Consensus         4 f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~-~   82 (259)
T d2ae2a_           4 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVAN-H   82 (259)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH-H
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHH-H
Confidence            57899999999996 99999999999999999999999999999988874   211    2221   11       11 2


Q ss_pred             CC-CeeEEEecCCCCCC
Q 012352          439 PE-DGMILANTTSIGMQ  454 (465)
Q Consensus       439 ~~-~~DilInaT~~gm~  454 (465)
                      .+ ..|++||+++....
T Consensus        83 ~~~~idilvnnAG~~~~   99 (259)
T d2ae2a_          83 FHGKLNILVNNAGIVIY   99 (259)
T ss_dssp             TTTCCCEEEECCCCCCC
T ss_pred             hCCCceEEEECCceecc
Confidence            34 68999999987643

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2e-07  Score=87.44  Aligned_cols=75  Identities=27%  Similarity=0.393  Sum_probs=59.9

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc---cch---hccccc------CCCCeeE
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA---LSL---ADLENF------NPEDGMI  444 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~---~~~---~~l~~~------~~~~~Di  444 (465)
                      .++||++||+|++ |+|++++..|++.|++|++++|+.+++++++++++...   .|+   +++.++      ..+..|+
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi   82 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDC   82 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCCE
Confidence            4789999999995 99999999999999999999999999999999886421   232   122110      3467999


Q ss_pred             EEecCCCC
Q 012352          445 LANTTSIG  452 (465)
Q Consensus       445 lInaT~~g  452 (465)
                      |||+++..
T Consensus        83 lVnnAG~~   90 (250)
T d1ydea1          83 VVNNAGHH   90 (250)
T ss_dssp             EEECCCCC
T ss_pred             EEeccccc
Confidence            99999865

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=98.42  E-value=1.6e-07  Score=89.26  Aligned_cols=74  Identities=24%  Similarity=0.302  Sum_probs=60.2

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchh---cc-------cccCCCCee
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLA---DL-------ENFNPEDGM  443 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~---~l-------~~~~~~~~D  443 (465)
                      |+||+|||+|++ |+|++++..|+++|++|++++|+.++++++.++++...    .|+.   ++       .+ ..+..|
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~-~~g~id   81 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVA-RFGKID   81 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHH-HHSCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHH-HhCCcc
Confidence            689999999995 99999999999999999999999999999999887542    1221   11       11 356899


Q ss_pred             EEEecCCCCC
Q 012352          444 ILANTTSIGM  453 (465)
Q Consensus       444 ilInaT~~gm  453 (465)
                      ++||++++.-
T Consensus        82 ilvnnAG~~~   91 (276)
T d1bdba_          82 TLIPNAGIWD   91 (276)
T ss_dssp             EEECCCCCCC
T ss_pred             cccccccccC
Confidence            9999998753

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=2.3e-07  Score=87.35  Aligned_cols=77  Identities=26%  Similarity=0.312  Sum_probs=60.6

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-----cc----cchh---cc-------cc
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-----HA----LSLA---DL-------EN  436 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-----~~----~~~~---~l-------~~  436 (465)
                      ..+++|.|||+|++ |+|++++..|++.|++|++++|++++++++++++..     ..    .|+.   ++       .+
T Consensus         6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~   85 (257)
T d1xg5a_           6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS   85 (257)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            34899999999996 999999999999999999999999999999888731     11    1221   11       11


Q ss_pred             cCCCCeeEEEecCCCCCC
Q 012352          437 FNPEDGMILANTTSIGMQ  454 (465)
Q Consensus       437 ~~~~~~DilInaT~~gm~  454 (465)
                       ..+..|+|||+++....
T Consensus        86 -~~g~iD~lVnnAg~~~~  102 (257)
T d1xg5a_          86 -QHSGVDICINNAGLARP  102 (257)
T ss_dssp             -HHCCCSEEEECCCCCCC
T ss_pred             -hcCCCCEEEecccccCC
Confidence             35779999999987643

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=98.40  E-value=3.3e-07  Score=86.68  Aligned_cols=74  Identities=23%  Similarity=0.334  Sum_probs=59.5

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc----c--cchh---ccccc------CCCCe
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH----A--LSLA---DLENF------NPEDG  442 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~----~--~~~~---~l~~~------~~~~~  442 (465)
                      |+||.|||+|++ |+|++++..|++.|++|++++|+.+++++++++++..    .  .|+.   ++.++      ..+..
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   83 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKL   83 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCc
Confidence            789999999986 9999999999999999999999999999999998631    1  2321   11110      34689


Q ss_pred             eEEEecCCCC
Q 012352          443 MILANTTSIG  452 (465)
Q Consensus       443 DilInaT~~g  452 (465)
                      |++||++++.
T Consensus        84 D~lVnnAG~~   93 (268)
T d2bgka1          84 DIMFGNVGVL   93 (268)
T ss_dssp             CEEEECCCCC
T ss_pred             ceeccccccc
Confidence            9999999865

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.39  E-value=1.3e-07  Score=82.63  Aligned_cols=71  Identities=18%  Similarity=0.206  Sum_probs=55.4

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccch------hcccccCCCCeeEEEecCCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL------ADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~------~~l~~~~~~~~DilInaT~~g  452 (465)
                      .|+|+|+|+|.+|+.+|+.|.+.|++|+|+|||.++++++++.++......      ..... .+...|++|.++|..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~i~~~~~~   78 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDA-EVAKHDLVISLIPYT   78 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHH-HHTTSSEEEECSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHh-hhhccceeEeeccch
Confidence            589999999999999999999999999999999999999998876432111      11122 234678888888753

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=98.38  E-value=1.8e-07  Score=88.09  Aligned_cols=76  Identities=22%  Similarity=0.303  Sum_probs=58.7

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH----CCcc----cchh---cc-------ccc
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV----GGHA----LSLA---DL-------ENF  437 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~----~~~~----~~~~---~l-------~~~  437 (465)
                      .+++||+|||+|++ |+|++++..|++.|++|++++|+.++++++++++    +.+.    .|+.   ++       .+ 
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~-   83 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDA-   83 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH-
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHH-
Confidence            46899999999996 9999999999999999999999988877766554    4332    2221   11       12 


Q ss_pred             CCCCeeEEEecCCCCC
Q 012352          438 NPEDGMILANTTSIGM  453 (465)
Q Consensus       438 ~~~~~DilInaT~~gm  453 (465)
                      ..+..|++||+++...
T Consensus        84 ~~g~iDilVnnAg~~~   99 (260)
T d1h5qa_          84 DLGPISGLIANAGVSV   99 (260)
T ss_dssp             HSCSEEEEEECCCCCC
T ss_pred             HhCCCcEecccccccc
Confidence            4578999999998754

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=98.37  E-value=1.9e-07  Score=87.14  Aligned_cols=74  Identities=22%  Similarity=0.223  Sum_probs=60.2

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc----cchh---cc-------cccCCCCee
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA----LSLA---DL-------ENFNPEDGM  443 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~----~~~~---~l-------~~~~~~~~D  443 (465)
                      |+||+|||+|++ |+|++++..|++.|++|++++|+.++++++.++++.+.    .|+.   ++       .+ ..++.|
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~-~~g~iD   81 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALE-EFGRLH   81 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHH-HHSCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHH-HhCCcc
Confidence            689999999996 99999999999999999999999999999999987643    2321   11       11 346899


Q ss_pred             EEEecCCCCC
Q 012352          444 ILANTTSIGM  453 (465)
Q Consensus       444 ilInaT~~gm  453 (465)
                      ++||+++...
T Consensus        82 iLinnAg~~~   91 (241)
T d2a4ka1          82 GVAHFAGVAH   91 (241)
T ss_dssp             EEEEGGGGTT
T ss_pred             Eecccccccc
Confidence            9999987653

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=2.1e-07  Score=87.61  Aligned_cols=76  Identities=30%  Similarity=0.430  Sum_probs=60.4

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchh---cc-------cccC
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLA---DL-------ENFN  438 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~---~l-------~~~~  438 (465)
                      ..++||++||+|++ |+|++++..|++.|++|++++|+.++++++++++.   .+.    .|+.   ++       .+ .
T Consensus         7 m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~-~   85 (255)
T d1fmca_           7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAIS-K   85 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH-H
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHH-H
Confidence            45899999999996 99999999999999999999999999999988773   222    2221   11       11 3


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|++||+++...
T Consensus        86 ~g~iDilvnnAG~~~  100 (255)
T d1fmca_          86 LGKVDILVNNAGGGG  100 (255)
T ss_dssp             HSSCCEEEECCCCCC
T ss_pred             cCCCCEeeeCCcCCC
Confidence            468999999998764

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.34  E-value=3.8e-07  Score=85.67  Aligned_cols=73  Identities=19%  Similarity=0.209  Sum_probs=57.8

Q ss_pred             CCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchh---cc-------cccCCCC
Q 012352          380 AGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLA---DL-------ENFNPED  441 (465)
Q Consensus       380 ~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~---~l-------~~~~~~~  441 (465)
                      +||.+||+|++ |+|++++..|++.|++|++++|+.++++++++++.   .+.    .|+.   ++       .+ ..+.
T Consensus         1 DgKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~-~~g~   79 (257)
T d2rhca1           1 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVE-RYGP   79 (257)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH-HTCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH-HhCC
Confidence            37899999996 99999999999999999999999999999988773   221    2321   11       12 4578


Q ss_pred             eeEEEecCCCCC
Q 012352          442 GMILANTTSIGM  453 (465)
Q Consensus       442 ~DilInaT~~gm  453 (465)
                      .|+|||++++..
T Consensus        80 iDilVnnAG~~~   91 (257)
T d2rhca1          80 VDVLVNNAGRPG   91 (257)
T ss_dssp             CSEEEECCCCCC
T ss_pred             CCEEEecccccC
Confidence            999999998764

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.33  E-value=2.1e-07  Score=87.69  Aligned_cols=76  Identities=18%  Similarity=0.085  Sum_probs=59.0

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC---cc----cchh---cc-------cccC
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG---HA----LSLA---DL-------ENFN  438 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~---~~----~~~~---~l-------~~~~  438 (465)
                      ++|+||+|||+|++ |+|++++..|++.|++|++++|+.++++++++++..   ..    .|+.   ++       .+ .
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~-~   82 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSS-M   82 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH-H
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHH-H
Confidence            57899999999996 999999999999999999999999999999887742   11    2221   11       11 2


Q ss_pred             C-CCeeEEEecCCCCC
Q 012352          439 P-EDGMILANTTSIGM  453 (465)
Q Consensus       439 ~-~~~DilInaT~~gm  453 (465)
                      . +..|++||++++..
T Consensus        83 ~~g~idilvnnAG~~~   98 (259)
T d1xq1a_          83 FGGKLDILINNLGAIR   98 (259)
T ss_dssp             HTTCCSEEEEECCC--
T ss_pred             hCCCcccccccccccC
Confidence            2 56899999998764

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=98.32  E-value=4e-07  Score=85.75  Aligned_cols=74  Identities=18%  Similarity=0.283  Sum_probs=57.1

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC-----Ccc----cchh---ccccc------CC
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG-----GHA----LSLA---DLENF------NP  439 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~-----~~~----~~~~---~l~~~------~~  439 (465)
                      |+||+++|+|++ |+|++++..|++.|++|++++|+.++++++.+++.     .+.    .|+.   ++.++      ..
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            679999999996 99999999999999999999999999888776652     121    1321   11110      35


Q ss_pred             CCeeEEEecCCCC
Q 012352          440 EDGMILANTTSIG  452 (465)
Q Consensus       440 ~~~DilInaT~~g  452 (465)
                      +..|+|||++++.
T Consensus        82 G~iDiLVnnAG~~   94 (258)
T d1iy8a_          82 GRIDGFFNNAGIE   94 (258)
T ss_dssp             SCCSEEEECCCCC
T ss_pred             CCCCEEEECCccc
Confidence            7899999999864

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=4.2e-07  Score=87.38  Aligned_cols=77  Identities=25%  Similarity=0.373  Sum_probs=59.3

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC--------Ccc----cchh---ccccc---
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG--------GHA----LSLA---DLENF---  437 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~--------~~~----~~~~---~l~~~---  437 (465)
                      ..|+||+|||+|++ |+|++++..|++.|++|++++|+.++++++++++.        ...    .|+.   ++.++   
T Consensus         8 g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~   87 (297)
T d1yxma1           8 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS   87 (297)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHH
Confidence            45899999999996 99999999999999999999999999999888763        111    1221   11110   


Q ss_pred             ---CCCCeeEEEecCCCCC
Q 012352          438 ---NPEDGMILANTTSIGM  453 (465)
Q Consensus       438 ---~~~~~DilInaT~~gm  453 (465)
                         ..+..|+|||+++...
T Consensus        88 ~~~~~G~iDiLVnnAg~~~  106 (297)
T d1yxma1          88 TLDTFGKINFLVNNGGGQF  106 (297)
T ss_dssp             HHHHHSCCCEEEECCCCCC
T ss_pred             HHHHhCCeEEEEeeccccc
Confidence               3467999999997653

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=98.32  E-value=4.4e-07  Score=84.93  Aligned_cols=73  Identities=29%  Similarity=0.430  Sum_probs=56.9

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCccc--chh---cc-------cccCCCCeeEE
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL--SLA---DL-------ENFNPEDGMIL  445 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~--~~~---~l-------~~~~~~~~Dil  445 (465)
                      |+||++||+|++ |+|++++..|++.|++|++++|+.++ .++++.++...+  |+.   ++       .+ ..+..|+|
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~-~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~-~~G~iDiL   80 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIGGAFFQVDLEDERERVRFVEEAAY-ALGRVDVL   80 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHTCEEEECCTTCHHHHHHHHHHHHH-HHSCCCEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH-HHHHHHcCCeEEEEeCCCHHHHHHHHHHHHH-hcCCCCeE
Confidence            679999999985 99999999999999999999999775 556777765432  221   11       12 35789999


Q ss_pred             EecCCCCC
Q 012352          446 ANTTSIGM  453 (465)
Q Consensus       446 InaT~~gm  453 (465)
                      ||++++..
T Consensus        81 VnnAG~~~   88 (248)
T d2d1ya1          81 VNNAAIAA   88 (248)
T ss_dssp             EECCCCCC
T ss_pred             EEeCcCCC
Confidence            99998754

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.31  E-value=3.5e-07  Score=86.67  Aligned_cols=75  Identities=19%  Similarity=0.274  Sum_probs=59.2

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC------cc----cchh---cc-------ccc
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG------HA----LSLA---DL-------ENF  437 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~------~~----~~~~---~l-------~~~  437 (465)
                      |+||++||+|++ |+|++++..|++.|++|++++|+.++++++++++..      ..    .|+.   ++       .+ 
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~-   81 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK-   81 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH-
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH-
Confidence            789999999996 999999999999999999999999999999888731      11    1221   11       11 


Q ss_pred             CCCCeeEEEecCCCCCC
Q 012352          438 NPEDGMILANTTSIGMQ  454 (465)
Q Consensus       438 ~~~~~DilInaT~~gm~  454 (465)
                      ..+..|++||+++....
T Consensus        82 ~~g~iDilvnnAG~~~~   98 (272)
T d1xkqa_          82 QFGKIDVLVNNAGAAIP   98 (272)
T ss_dssp             HHSCCCEEEECCCCCCC
T ss_pred             HhCCceEEEeCCcccCc
Confidence            34689999999987643

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.31  E-value=1.6e-07  Score=87.10  Aligned_cols=72  Identities=22%  Similarity=0.190  Sum_probs=54.0

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchh----cccccCCCCeeEEEecCCCCC
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA----DLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~----~l~~~~~~~~DilInaT~~gm  453 (465)
                      +++|+|||+|++ |+|++++..|++.|++|++++|+.+++++...++  ...|+.    .+.+ ..++.|++||+++...
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~~--~~~Dv~~~~~~~~~-~~g~iD~lVnnAG~~~   78 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRY--VVCDLRKDLDLLFE-KVKEVDILVLNAGGPK   78 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEE--EECCTTTCHHHHHH-HSCCCSEEEECCCCCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhcCCcE--EEcchHHHHHHHHH-HhCCCcEEEecccccC
Confidence            679999999985 9999999999999999999999987765542211  112322    2222 4678999999998653

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=98.30  E-value=1e-06  Score=82.87  Aligned_cols=77  Identities=23%  Similarity=0.242  Sum_probs=59.3

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC---cc----cch---hcc-------cccC
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG---HA----LSL---ADL-------ENFN  438 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~---~~----~~~---~~l-------~~~~  438 (465)
                      ++++||+|||+|++ |+|++++..|++.|++|++++|++++++++++++..   ..    .|+   +++       .+..
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~   81 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF   81 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHh
Confidence            57899999999985 999999999999999999999999999998887742   11    122   111       1112


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|+|||+++...
T Consensus        82 ~g~idilinnag~~~   96 (258)
T d1ae1a_          82 DGKLNILVNNAGVVI   96 (258)
T ss_dssp             TSCCCEEEECCCCCC
T ss_pred             CCCcEEEeccccccc
Confidence            246899999998764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=98.29  E-value=4.5e-07  Score=85.39  Aligned_cols=73  Identities=19%  Similarity=0.252  Sum_probs=58.1

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC---cc----cchh---cc-------cccCCC
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG---HA----LSLA---DL-------ENFNPE  440 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~---~~----~~~~---~l-------~~~~~~  440 (465)
                      |+||.|||+|++ |+|++++..|++.|++|++++|+.++++++++++..   +.    .|+.   ++       .+ ..+
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~-~~g   81 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVR-DFG   81 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHH-HHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH-HhC
Confidence            679999999996 999999999999999999999999999999888742   21    2221   11       11 346


Q ss_pred             CeeEEEecCCCC
Q 012352          441 DGMILANTTSIG  452 (465)
Q Consensus       441 ~~DilInaT~~g  452 (465)
                      ..|++||+++..
T Consensus        82 ~iDilVnnaG~~   93 (260)
T d1zema1          82 KIDFLFNNAGYQ   93 (260)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCeehhhhccc
Confidence            899999998864

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.28  E-value=6.1e-07  Score=84.17  Aligned_cols=71  Identities=28%  Similarity=0.434  Sum_probs=55.6

Q ss_pred             cEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Ccc----cchh---cc-------cccCCCCee
Q 012352          382 KLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHA----LSLA---DL-------ENFNPEDGM  443 (465)
Q Consensus       382 k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~---~l-------~~~~~~~~D  443 (465)
                      |.|||+|++ |+|++++..|+++|++|++++|++++++++++++.   .+.    .|+.   ++       .+ ..+..|
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~-~~g~iD   80 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARK-TLGGFD   80 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH-HTTCCC
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH-HhCCcc
Confidence            567999986 99999999999999999999999999999988773   222    2321   11       12 457899


Q ss_pred             EEEecCCCCC
Q 012352          444 ILANTTSIGM  453 (465)
Q Consensus       444 ilInaT~~gm  453 (465)
                      +|||+++++.
T Consensus        81 ilVnnAG~~~   90 (255)
T d1gega_          81 VIVNNAGVAP   90 (255)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEecccccc
Confidence            9999998764

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.28  E-value=3.9e-07  Score=86.53  Aligned_cols=76  Identities=22%  Similarity=0.338  Sum_probs=58.8

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---C---cc----cchhc---cccc------C
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG---G---HA----LSLAD---LENF------N  438 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~---~~----~~~~~---l~~~------~  438 (465)
                      ++||+++|+|++ |+|++++..|++.|++|++++|+.++++++++++.   .   ..    .|+.+   +.++      .
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            679999999996 99999999999999999999999999999888773   1   11    12211   1110      3


Q ss_pred             CCCeeEEEecCCCCCC
Q 012352          439 PEDGMILANTTSIGMQ  454 (465)
Q Consensus       439 ~~~~DilInaT~~gm~  454 (465)
                      .+..|++||+++....
T Consensus        82 ~G~iDilVnnAG~~~~   97 (274)
T d1xhla_          82 FGKIDILVNNAGANLA   97 (274)
T ss_dssp             HSCCCEEEECCCCCCC
T ss_pred             cCCceEEEeecccccc
Confidence            4679999999987653

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=6.9e-07  Score=83.75  Aligned_cols=74  Identities=26%  Similarity=0.355  Sum_probs=57.7

Q ss_pred             CCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-----cc----cchhc---cccc------CCC
Q 012352          380 AGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-----HA----LSLAD---LENF------NPE  440 (465)
Q Consensus       380 ~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-----~~----~~~~~---l~~~------~~~  440 (465)
                      +||.|||+|++ |+|++++..|+++|++|++++|+.++.+++++++..     ..    .|+.+   +.++      ..+
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            58999999995 999999999999999999999999999998888742     11    12211   1110      346


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+|||+++...
T Consensus        82 ~iDilVnnAg~~~   94 (254)
T d2gdza1          82 RLDILVNNAGVNN   94 (254)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CcCeecccccccc
Confidence            8999999998753

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=98.26  E-value=4.7e-07  Score=85.43  Aligned_cols=77  Identities=27%  Similarity=0.416  Sum_probs=57.3

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCH-HHHHHHHHHHC---Ccc----cchh---ccccc------C
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTY-DRARELAETVG---GHA----LSLA---DLENF------N  438 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~-~~a~~la~~~~---~~~----~~~~---~l~~~------~  438 (465)
                      .+++||.++|+|++ |+|++++..|++.|++|++++|+. ++++++++++.   .+.    .|+.   ++.++      .
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            36899999999985 999999999999999999999974 56777776653   222    1221   11110      3


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|++||++++..
T Consensus        83 ~G~iDiLVnnAG~~~   97 (261)
T d1geea_          83 FGKLDVMINNAGLEN   97 (261)
T ss_dssp             HSCCCEEEECCCCCC
T ss_pred             hCCCCEeeccceecC
Confidence            468999999998764

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.26  E-value=4e-07  Score=85.86  Aligned_cols=75  Identities=23%  Similarity=0.328  Sum_probs=56.7

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC------cc----cchh---ccccc------C
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG------HA----LSLA---DLENF------N  438 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~------~~----~~~~---~l~~~------~  438 (465)
                      ++||.|||+|++ |+|++++..|++.|++|++++|+.++++++++++..      ..    .|+.   ++.++      .
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   82 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            679999999996 999999999999999999999999999999887631      11    1221   11110      3


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|++||+++...
T Consensus        83 ~g~iDilvnnAG~~~   97 (264)
T d1spxa_          83 FGKLDILVNNAGAAI   97 (264)
T ss_dssp             HSCCCEEEECCC---
T ss_pred             hCCCCEeeccccccc
Confidence            468999999998753

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=98.25  E-value=6.1e-07  Score=83.84  Aligned_cols=75  Identities=29%  Similarity=0.378  Sum_probs=56.2

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCH-HHHHHHHHHHCCcc----cchh---ccccc------CCCCee
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTY-DRARELAETVGGHA----LSLA---DLENF------NPEDGM  443 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~-~~a~~la~~~~~~~----~~~~---~l~~~------~~~~~D  443 (465)
                      ++||.++|+|++ |+|++++..|++.|++|++++|+. +.+++..+.++.+.    .|+.   ++.++      ..+..|
T Consensus         3 L~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iD   82 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCD   82 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence            679999999996 999999999999999999999976 44556666666542    2322   11110      356899


Q ss_pred             EEEecCCCCC
Q 012352          444 ILANTTSIGM  453 (465)
Q Consensus       444 ilInaT~~gm  453 (465)
                      ++||++++..
T Consensus        83 ilVnnAG~~~   92 (247)
T d2ew8a1          83 ILVNNAGIYP   92 (247)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEECCCCCC
Confidence            9999998753

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=98.23  E-value=9.6e-07  Score=84.16  Aligned_cols=77  Identities=23%  Similarity=0.328  Sum_probs=59.6

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH----CCcc----cchh---cc-------ccc
Q 012352          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV----GGHA----LSLA---DL-------ENF  437 (465)
Q Consensus       377 ~~l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~----~~~~----~~~~---~l-------~~~  437 (465)
                      ..++||+|||+|+ ||+|++++..|++.|++|++++|+.++++++++++    +...    .++.   ++       .+ 
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~-   99 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK-   99 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH-
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhh-
Confidence            4689999999998 59999999999999999999999999888777665    3221    1221   11       11 


Q ss_pred             CCCCeeEEEecCCCCCC
Q 012352          438 NPEDGMILANTTSIGMQ  454 (465)
Q Consensus       438 ~~~~~DilInaT~~gm~  454 (465)
                      ..+..|++||+++.+..
T Consensus       100 ~~g~iDilvnnAg~~~~  116 (294)
T d1w6ua_         100 VAGHPNIVINNAAGNFI  116 (294)
T ss_dssp             HTCSCSEEEECCCCCCC
T ss_pred             hccccchhhhhhhhccc
Confidence            35789999999987643

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=98.23  E-value=5.2e-07  Score=84.88  Aligned_cols=76  Identities=25%  Similarity=0.328  Sum_probs=55.7

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECC-HHHHHHHHHHH----CCcc----cchh---ccccc------CC
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT-YDRARELAETV----GGHA----LSLA---DLENF------NP  439 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~-~~~a~~la~~~----~~~~----~~~~---~l~~~------~~  439 (465)
                      |+||.+||+|++ |+|++++..|+++|++|++++|+ .++++++.+++    +.+.    .|+.   ++.++      ..
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            578999999996 99999999999999999999996 56677666544    3322    2322   11110      34


Q ss_pred             CCeeEEEecCCCCCC
Q 012352          440 EDGMILANTTSIGMQ  454 (465)
Q Consensus       440 ~~~DilInaT~~gm~  454 (465)
                      +..|+|||++++...
T Consensus        82 G~iDiLVnnAG~~~~   96 (260)
T d1x1ta1          82 GRIDILVNNAGIQHT   96 (260)
T ss_dssp             SCCSEEEECCCCCCC
T ss_pred             CCCcEEEeecccccC
Confidence            679999999987643

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.15  E-value=1.1e-06  Score=84.69  Aligned_cols=76  Identities=22%  Similarity=0.317  Sum_probs=57.5

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEE---------CCHHHHHHHHHHHCCcc----cc---hhcc-----
Q 012352          377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIAN---------RTYDRARELAETVGGHA----LS---LADL-----  434 (465)
Q Consensus       377 ~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~---------R~~~~a~~la~~~~~~~----~~---~~~l-----  434 (465)
                      ..++||.+||+|++ |+|++++..|+++|++|++.+         |+.+.++++.++++...    .+   .++.     
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~   82 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVK   82 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHH
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHH
Confidence            46889999999997 999999999999999999985         45667788887774211    11   1111     


Q ss_pred             --cccCCCCeeEEEecCCCCC
Q 012352          435 --ENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       435 --~~~~~~~~DilInaT~~gm  453 (465)
                        .+ ..++.|+|||++++..
T Consensus        83 ~~~~-~~G~iDiLVnNAGi~~  102 (302)
T d1gz6a_          83 TALD-TFGRIDVVVNNAGILR  102 (302)
T ss_dssp             HHHH-HTSCCCEEEECCCCCC
T ss_pred             HHHH-HcCCCCEEEECCccCC
Confidence              12 4578999999998764

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.3e-06  Score=82.47  Aligned_cols=75  Identities=24%  Similarity=0.306  Sum_probs=58.0

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC----Ccc----cchhc----------ccccCC
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG----GHA----LSLAD----------LENFNP  439 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~----~~~----~~~~~----------l~~~~~  439 (465)
                      ++||+|||+|++ |+|++++..|+++|++|++++|+.++++++++++.    ...    .+.++          ... ..
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~   90 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGK-LM   90 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHH-HH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHH-Hh
Confidence            899999999996 99999999999999999999999999999887652    111    11111          111 34


Q ss_pred             CCeeEEEecCCCCCC
Q 012352          440 EDGMILANTTSIGMQ  454 (465)
Q Consensus       440 ~~~DilInaT~~gm~  454 (465)
                      +..|++||+++....
T Consensus        91 g~~~~li~nag~~~~  105 (269)
T d1xu9a_          91 GGLDMLILNHITNTS  105 (269)
T ss_dssp             TSCSEEEECCCCCCC
T ss_pred             CCccccccccccccc
Confidence            678999999887643

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=5.3e-07  Score=84.16  Aligned_cols=74  Identities=26%  Similarity=0.373  Sum_probs=57.8

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cchh------cccccCCCCeeEEEecC
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSLA------DLENFNPEDGMILANTT  449 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~~------~l~~~~~~~~DilInaT  449 (465)
                      ++||+|||+|++ |+|++++..|++.|++|++++|++++++++.+..+...  .+..      ...+ .....|+|||++
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~id~lVn~a   82 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFAN-EVERLDVLFNVA   82 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHH-HCSCCSEEEECC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhccCCceeeeecccccccccccc-ccccceeEEecc
Confidence            789999999996 99999999999999999999999999888876655322  1221      1112 356789999998


Q ss_pred             CCCC
Q 012352          450 SIGM  453 (465)
Q Consensus       450 ~~gm  453 (465)
                      +...
T Consensus        83 g~~~   86 (245)
T d2ag5a1          83 GFVH   86 (245)
T ss_dssp             CCCC
T ss_pred             cccC
Confidence            8653

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.5e-06  Score=82.19  Aligned_cols=72  Identities=21%  Similarity=0.297  Sum_probs=54.3

Q ss_pred             CcEE-EEEccc-hhHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHC---Ccc----cchhc---c-------cccCCC
Q 012352          381 GKLF-VVIGAG-GAGKALAYGAKAK-GARVVIANRTYDRARELAETVG---GHA----LSLAD---L-------ENFNPE  440 (465)
Q Consensus       381 ~k~v-lV~GaG-g~g~ai~~~L~~~-G~~v~i~~R~~~~a~~la~~~~---~~~----~~~~~---l-------~~~~~~  440 (465)
                      ||+| ||+|++ |+|++++..|+++ |++|++++|+.++++++++++.   ...    .|+.+   +       .+ ..+
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~-~~g   80 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRK-EYG   80 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHH-HHS
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHH-hcC
Confidence            4555 777885 9999999999986 7899999999999999988874   221    23322   1       11 346


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+|||++++..
T Consensus        81 ~iDiLVnNAGi~~   93 (275)
T d1wmaa1          81 GLDVLVNNAGIAF   93 (275)
T ss_dssp             SEEEEEECCCCCC
T ss_pred             CcEEEEEcCCcCC
Confidence            8999999999864

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.03  E-value=2.6e-06  Score=79.77  Aligned_cols=75  Identities=23%  Similarity=0.417  Sum_probs=56.3

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEE-ECCHHHHHHHHHHH---CCcc----cchh---cc-------cccC
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA-NRTYDRARELAETV---GGHA----LSLA---DL-------ENFN  438 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~-~R~~~~a~~la~~~---~~~~----~~~~---~l-------~~~~  438 (465)
                      +|+||+|||+|++ |+|++++..|++.|++|++. +|+.+.++++.+++   +.+.    .|+.   ++       .+ .
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~-~   81 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVS-H   81 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH-H
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHH-H
Confidence            5889999999985 99999999999999999885 67777777777766   3322    1221   11       12 3


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|++||+++...
T Consensus        82 ~g~idilinnag~~~   96 (259)
T d1ja9a_          82 FGGLDFVMSNSGMEV   96 (259)
T ss_dssp             HSCEEEEECCCCCCC
T ss_pred             cCCCcEEEecccccc
Confidence            567999999998764

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.02  E-value=2.5e-06  Score=80.51  Aligned_cols=78  Identities=23%  Similarity=0.383  Sum_probs=57.7

Q ss_pred             cccccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECC-HHHHHHHHHHHC---Ccc----cch---hcc-------c
Q 012352          375 VSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT-YDRARELAETVG---GHA----LSL---ADL-------E  435 (465)
Q Consensus       375 ~~~~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~-~~~a~~la~~~~---~~~----~~~---~~l-------~  435 (465)
                      ...+|+||+|||+|++ |+|++++..|+++|++|+++.|+ .+.++++++++.   ...    .++   +++       .
T Consensus        12 ~~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~   91 (272)
T d1g0oa_          12 QSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAV   91 (272)
T ss_dssp             GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHH
Confidence            4566999999999985 99999999999999999998765 667777776653   221    122   111       1


Q ss_pred             ccCCCCeeEEEecCCCCC
Q 012352          436 NFNPEDGMILANTTSIGM  453 (465)
Q Consensus       436 ~~~~~~~DilInaT~~gm  453 (465)
                      + ..+..|++||+++..-
T Consensus        92 ~-~~g~idilV~nag~~~  108 (272)
T d1g0oa_          92 K-IFGKLDIVCSNSGVVS  108 (272)
T ss_dssp             H-HHSCCCEEEECCCCCC
T ss_pred             H-HhCCCCccccccccch
Confidence            2 3467899999997654

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=98.00  E-value=3.6e-06  Score=78.61  Aligned_cols=75  Identities=17%  Similarity=0.201  Sum_probs=55.4

Q ss_pred             cCCcEEEEEcc-c--hhHHHHHHHHHHCCCeEEEEECCHHHH-HHHHHHHCCcc----cchh------c----ccc-c-C
Q 012352          379 LAGKLFVVIGA-G--GAGKALAYGAKAKGARVVIANRTYDRA-RELAETVGGHA----LSLA------D----LEN-F-N  438 (465)
Q Consensus       379 l~~k~vlV~Ga-G--g~g~ai~~~L~~~G~~v~i~~R~~~~a-~~la~~~~~~~----~~~~------~----l~~-~-~  438 (465)
                      ++||++||+|+ |  |+|++++..|++.|++|++++|+.++. ++++++++...    .++.      +    +.+ + .
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~~~   83 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGA   83 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhcccc
Confidence            78999999995 3  799999999999999999999998776 55666666432    1221      1    111 1 3


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|++||+++.+.
T Consensus        84 ~~~ld~~i~~ag~~~   98 (268)
T d2h7ma1          84 GNKLDGVVHSIGFMP   98 (268)
T ss_dssp             TCCEEEEEECCCCCC
T ss_pred             CCCcceeeecccccC
Confidence            467899999998654

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.97  E-value=4.8e-07  Score=84.09  Aligned_cols=71  Identities=20%  Similarity=0.353  Sum_probs=52.3

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccch---hc-------ccccCCCCeeEEE
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL---AD-------LENFNPEDGMILA  446 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~---~~-------l~~~~~~~~DilI  446 (465)
                      ++++|++||+|++ |+|++++..|++.|++|++++|+.++.+++.   . ...++   ++       +.+ ..+..|+||
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~---~-~~~Dv~~~~~v~~~~~~~~~-~~g~iDiLV   78 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF---G-VEVDVTDSDAVDRAFTAVEE-HQGPVEVLV   78 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSE---E-EECCTTCHHHHHHHHHHHHH-HHSSCSEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCce---E-EEEecCCHHHHHHHHHHHHH-hcCCceEEE
Confidence            5889999999996 9999999999999999999999876543321   0 01122   11       122 346799999


Q ss_pred             ecCCCCC
Q 012352          447 NTTSIGM  453 (465)
Q Consensus       447 naT~~gm  453 (465)
                      |++++..
T Consensus        79 nnAG~~~   85 (237)
T d1uzma1          79 SNAGLSA   85 (237)
T ss_dssp             EECSCCC
T ss_pred             eeecccc
Confidence            9998754

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.95  E-value=4.6e-06  Score=77.76  Aligned_cols=75  Identities=25%  Similarity=0.306  Sum_probs=53.0

Q ss_pred             cccCCcEEEEEccc---hhHHHHHHHHHHCCCeEEEEECCHHHHHHH---HHHHCCc-c--cch---hcc-------ccc
Q 012352          377 SALAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYDRAREL---AETVGGH-A--LSL---ADL-------ENF  437 (465)
Q Consensus       377 ~~l~~k~vlV~GaG---g~g~ai~~~L~~~G~~v~i~~R~~~~a~~l---a~~~~~~-~--~~~---~~l-------~~~  437 (465)
                      .+++||++||+|++   |+|++++..|++.|++|+++.|+.+..+..   .+..+.. .  .++   +++       .+ 
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~-   82 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKE-   82 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHH-
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHH-
Confidence            56899999999984   799999999999999999999986543333   2222221 1  122   111       12 


Q ss_pred             CCCCeeEEEecCCCC
Q 012352          438 NPEDGMILANTTSIG  452 (465)
Q Consensus       438 ~~~~~DilInaT~~g  452 (465)
                      ..+..|++||+++..
T Consensus        83 ~~g~iDilVnnag~~   97 (256)
T d1ulua_          83 AFGGLDYLVHAIAFA   97 (256)
T ss_dssp             HHSSEEEEEECCCCC
T ss_pred             hcCCceEEEeccccc
Confidence            357899999998864

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.94  E-value=5.5e-06  Score=76.83  Aligned_cols=71  Identities=20%  Similarity=0.326  Sum_probs=54.7

Q ss_pred             EEEEEccc-hhHHHHHHHHHHCCCe-------EEEEECCHHHHHHHHHHHCC---cc----cchh---cc-------ccc
Q 012352          383 LFVVIGAG-GAGKALAYGAKAKGAR-------VVIANRTYDRARELAETVGG---HA----LSLA---DL-------ENF  437 (465)
Q Consensus       383 ~vlV~GaG-g~g~ai~~~L~~~G~~-------v~i~~R~~~~a~~la~~~~~---~~----~~~~---~l-------~~~  437 (465)
                      .|||+|++ |+|++++..|++.|++       |++++|+.++++++++++..   ..    .|+.   ++       .+ 
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~-   81 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVE-   81 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHH-
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH-
Confidence            47888996 9999999999999987       99999999999999888742   21    1321   11       12 


Q ss_pred             CCCCeeEEEecCCCCCC
Q 012352          438 NPEDGMILANTTSIGMQ  454 (465)
Q Consensus       438 ~~~~~DilInaT~~gm~  454 (465)
                      ..+..|+|||+++....
T Consensus        82 ~~g~iDilvnnAg~~~~   98 (240)
T d2bd0a1          82 RYGHIDCLVNNAGVGRF   98 (240)
T ss_dssp             HTSCCSEEEECCCCCCC
T ss_pred             HcCCcceeecccccccC
Confidence            45789999999987643

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=97.87  E-value=1.2e-05  Score=75.15  Aligned_cols=74  Identities=15%  Similarity=0.242  Sum_probs=52.8

Q ss_pred             cCCcEEEEEcc-c--hhHHHHHHHHHHCCCeEEEEECCHH---HHHHHHHHHCCcc---cch----------hcccccCC
Q 012352          379 LAGKLFVVIGA-G--GAGKALAYGAKAKGARVVIANRTYD---RARELAETVGGHA---LSL----------ADLENFNP  439 (465)
Q Consensus       379 l~~k~vlV~Ga-G--g~g~ai~~~L~~~G~~v~i~~R~~~---~a~~la~~~~~~~---~~~----------~~l~~~~~  439 (465)
                      |+||++||+|+ |  |+|++++.+|+++|++|++++|+++   +++++.+..+...   .+.          +++.+ ..
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~   81 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKK-DL   81 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH-HT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHH-Hc
Confidence            68999999996 4  7999999999999999999999853   4444444433211   111          11122 46


Q ss_pred             CCeeEEEecCCCCC
Q 012352          440 EDGMILANTTSIGM  453 (465)
Q Consensus       440 ~~~DilInaT~~gm  453 (465)
                      +..|++||+++...
T Consensus        82 g~id~lV~nag~~~   95 (274)
T d2pd4a1          82 GSLDFIVHSVAFAP   95 (274)
T ss_dssp             SCEEEEEECCCCCC
T ss_pred             CCCCeEEeeccccc
Confidence            78999999987653

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=97.84  E-value=4.8e-06  Score=77.89  Aligned_cols=75  Identities=17%  Similarity=0.158  Sum_probs=52.2

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHH---HHCC-cc----cch----hccccc------C
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAE---TVGG-HA----LSL----ADLENF------N  438 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~---~~~~-~~----~~~----~~l~~~------~  438 (465)
                      +++||+|||+|++ |+|++++..|++.|++|+++.|+.++.+++++   ..+. ..    .++    +++.++      .
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   81 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ   81 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHH
Confidence            4789999999996 99999999999999999888776655554443   2222 11    122    111110      3


Q ss_pred             CCCeeEEEecCCCC
Q 012352          439 PEDGMILANTTSIG  452 (465)
Q Consensus       439 ~~~~DilInaT~~g  452 (465)
                      .+..|+|||+++..
T Consensus        82 ~g~iDilvnnAG~~   95 (254)
T d1sbya1          82 LKTVDILINGAGIL   95 (254)
T ss_dssp             HSCCCEEEECCCCC
T ss_pred             cCCCCEEEeCCCCC
Confidence            46899999999854

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=9.4e-06  Score=75.09  Aligned_cols=49  Identities=24%  Similarity=0.360  Sum_probs=46.0

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG  426 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~  426 (465)
                      +++||.+||+|++ |+|++++..|++.|++|++++|+.+++++++++++.
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~   51 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGN   51 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC
Confidence            4789999999996 999999999999999999999999999999999875

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=97.78  E-value=1.4e-05  Score=75.62  Aligned_cols=43  Identities=26%  Similarity=0.255  Sum_probs=37.9

Q ss_pred             cccCCcEEEEEccc---hhHHHHHHHHHHCCCeEEEEECCHHHHHH
Q 012352          377 SALAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYDRARE  419 (465)
Q Consensus       377 ~~l~~k~vlV~GaG---g~g~ai~~~L~~~G~~v~i~~R~~~~a~~  419 (465)
                      .+|+||++||+|++   |+|++++..|+++|++|++.+|+.+....
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~   49 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIF   49 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhh
Confidence            57899999999985   89999999999999999999998665443

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.71  E-value=9e-06  Score=75.48  Aligned_cols=74  Identities=22%  Similarity=0.307  Sum_probs=54.1

Q ss_pred             CCcEEEEEccc-hhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCCcc----cchhc---cccc------CC--CC
Q 012352          380 AGKLFVVIGAG-GAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGHA----LSLAD---LENF------NP--ED  441 (465)
Q Consensus       380 ~~k~vlV~GaG-g~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~~~----~~~~~---l~~~------~~--~~  441 (465)
                      +.|+|||+|++ |+|++++..|++.|+  +|++..|+.++++++.+..+...    .|+.+   +.++      ..  ..
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~~   81 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDG   81 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGC
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCCCC
Confidence            35899999996 999999999999996  78889999999998876554321    23221   1110      11  24


Q ss_pred             eeEEEecCCCCC
Q 012352          442 GMILANTTSIGM  453 (465)
Q Consensus       442 ~DilInaT~~gm  453 (465)
                      .|+|||++++..
T Consensus        82 idilinnAG~~~   93 (250)
T d1yo6a1          82 LSLLINNAGVLL   93 (250)
T ss_dssp             CCEEEECCCCCC
T ss_pred             eEEEEEcCcccC
Confidence            899999998753

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=5.2e-05  Score=65.74  Aligned_cols=69  Identities=30%  Similarity=0.418  Sum_probs=53.1

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-cccchhcccccCCCCeeEEEecCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-HALSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-~~~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      ..+.||+|+|+|.|-+||.+|..++.+|++|+++.+++-++-+.  ...+ ...++++    .+..+|++|.||+.
T Consensus        20 ~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A--~~dG~~v~~~~~----a~~~adivvtaTGn   89 (163)
T d1li4a1          20 VMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQA--AMEGYEVTTMDE----ACQEGNIFVTTTGC   89 (163)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH--HHTTCEECCHHH----HTTTCSEEEECSSC
T ss_pred             ceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHh--hcCceEeeehhh----hhhhccEEEecCCC
Confidence            56899999999999999999999999999999999998765443  3332 2233332    23457888888874

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=97.70  E-value=2e-05  Score=73.12  Aligned_cols=71  Identities=27%  Similarity=0.399  Sum_probs=52.6

Q ss_pred             cEEEEEccc-hhHHHHHHHHHHCCCeEEEE-ECCHHHHHHHHHHHC---Ccc----cchh---cc-------cccCCCCe
Q 012352          382 KLFVVIGAG-GAGKALAYGAKAKGARVVIA-NRTYDRARELAETVG---GHA----LSLA---DL-------ENFNPEDG  442 (465)
Q Consensus       382 k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~-~R~~~~a~~la~~~~---~~~----~~~~---~l-------~~~~~~~~  442 (465)
                      +.|||+|++ |+|++++..|++.|++|++. .|+.+.++++.+++.   .+.    .|+.   ++       .+ ..++.
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~-~~g~i   80 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAID-AWGTI   80 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHH-HSSCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHH-HcCCC
Confidence            468888885 99999999999999999885 678888888877653   322    1321   11       12 35789


Q ss_pred             eEEEecCCCCC
Q 012352          443 MILANTTSIGM  453 (465)
Q Consensus       443 DilInaT~~gm  453 (465)
                      |++||+++...
T Consensus        81 DiLVnnAg~~~   91 (244)
T d1edoa_          81 DVVVNNAGITR   91 (244)
T ss_dssp             SEEEECCCCCC
T ss_pred             Ccccccccccc
Confidence            99999987654

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.66  E-value=3e-05  Score=67.25  Aligned_cols=43  Identities=26%  Similarity=0.416  Sum_probs=39.5

Q ss_pred             EEEEE-ccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC
Q 012352          383 LFVVI-GAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVG  425 (465)
Q Consensus       383 ~vlV~-GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~  425 (465)
                      ++.|+ |+|++|++++..|++.|++|++++|+++++++++++++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~   45 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYR   45 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            46777 78999999999999999999999999999999988875

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=97.59  E-value=2.5e-05  Score=73.24  Aligned_cols=43  Identities=30%  Similarity=0.453  Sum_probs=35.8

Q ss_pred             EEEEEccc-hhHHHHHHHHHHCCCeEEEEE-CCHHHHHHHHHHHC
Q 012352          383 LFVVIGAG-GAGKALAYGAKAKGARVVIAN-RTYDRARELAETVG  425 (465)
Q Consensus       383 ~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~-R~~~~a~~la~~~~  425 (465)
                      .+||+|++ |+|++++..|++.|++|++.. |+.++++++.+++.
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~   48 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLN   48 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHH
Confidence            57888885 999999999999999998864 56778888877663

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.59  E-value=7.3e-05  Score=64.61  Aligned_cols=69  Identities=28%  Similarity=0.346  Sum_probs=54.3

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-cccchhcccccCCCCeeEEEecCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-HALSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-~~~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      ..+.||+++|+|-|-.||.+|.++..+|++|+|+.++|-++-+.  ...+ ...+++   + .+..+|++|.+|+-
T Consensus        19 ~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA--~mdGf~v~~~~---~-a~~~aDi~vTaTGn   88 (163)
T d1v8ba1          19 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA--VMEGFNVVTLD---E-IVDKGDFFITCTGN   88 (163)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH--HTTTCEECCHH---H-HTTTCSEEEECCSS
T ss_pred             ceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHH--HhcCCccCchh---H-ccccCcEEEEcCCC
Confidence            56889999999999999999999999999999999999775443  3332 223333   3 34568999999975

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.57  E-value=5.2e-05  Score=61.60  Aligned_cols=77  Identities=13%  Similarity=0.089  Sum_probs=51.1

Q ss_pred             CcccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHH-HHHHHHHCCcccchhcccccCCCCeeEEEecCCC
Q 012352          374 GVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRA-RELAETVGGHALSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       374 ~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a-~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      |.+.++++|+|+|+|+|.+|..-+..|.+.|++|++++.+.... ..+++.-...... ....+..+..+++++.+|+-
T Consensus         5 Pi~l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~-~~~~~~dl~~~~lv~~at~d   82 (113)
T d1pjqa1           5 PIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVE-GPFDETLLDSCWLAIAATDD   82 (113)
T ss_dssp             EEEECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEE-SSCCGGGGTTCSEEEECCSC
T ss_pred             ceEEEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeec-cCCCHHHhCCCcEEeecCCC
Confidence            45678999999999999999999999999999999998765432 2333221111110 00111124457788888754

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.54  E-value=1.4e-05  Score=74.40  Aligned_cols=69  Identities=13%  Similarity=0.128  Sum_probs=50.4

Q ss_pred             EEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-cccch---hc-------ccccCCCCeeEEEecCC
Q 012352          383 LFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-HALSL---AD-------LENFNPEDGMILANTTS  450 (465)
Q Consensus       383 ~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-~~~~~---~~-------l~~~~~~~~DilInaT~  450 (465)
                      ++||+|++ |+|++++..|+++|++|++++|+.++.+++...... ...+.   ++       +.+ ..++.|++||+++
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~~~~-~~G~iDiLVnNAg   80 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTS-AYGQVDVLVSNDI   80 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHH-HHSCCCEEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCcEEEeccCCHHHHHHHHHHHHH-HcCCCCEEEECCc
Confidence            68999996 999999999999999999999998887776543211 01111   11       112 3578999999987


Q ss_pred             CC
Q 012352          451 IG  452 (465)
Q Consensus       451 ~g  452 (465)
                      ..
T Consensus        81 ~~   82 (252)
T d1zmta1          81 FA   82 (252)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.53  E-value=0.00013  Score=60.68  Aligned_cols=69  Identities=20%  Similarity=0.332  Sum_probs=55.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCccc-----chhcccccCCCCeeEEEecCCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL-----SLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~-----~~~~l~~~~~~~~DilInaT~~  451 (465)
                      +|+|+|+|..|+.++..|.+.|.+|+++++++++.+.+.++++...+     +.+-+.+..+.++|.+|-+|+-
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~   75 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGK   75 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCc
Confidence            68999999999999999999999999999999999999888764332     2222333346778999888753

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.52  E-value=5.6e-05  Score=65.85  Aligned_cols=71  Identities=21%  Similarity=0.222  Sum_probs=52.5

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc-------c-----chhcccccCCCCeeEEEec
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA-------L-----SLADLENFNPEDGMILANT  448 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~-------~-----~~~~l~~~~~~~~DilIna  448 (465)
                      .|++.|+|+|.+|.+++..|++.|++|++++|++++.+.+.+.-....       .     ...++.+ .+.++|+||-+
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~~aD~iii~   79 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGL-AVKDADVILIV   79 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHH-HHTTCSEEEEC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHh-HhcCCCEEEEE
Confidence            378999999999999999999999999999999999888765421100       0     0011222 34678899988


Q ss_pred             CCCC
Q 012352          449 TSIG  452 (465)
Q Consensus       449 T~~g  452 (465)
                      ++..
T Consensus        80 v~~~   83 (184)
T d1bg6a2          80 VPAI   83 (184)
T ss_dssp             SCGG
T ss_pred             Echh
Confidence            8764

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.52  E-value=2.9e-05  Score=71.91  Aligned_cols=70  Identities=26%  Similarity=0.307  Sum_probs=50.6

Q ss_pred             EEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHH-HHHHHHHHHC----Cccc----ch------hc--------ccccC
Q 012352          383 LFVVIGAG-GAGKALAYGAKAKGARVVIANRTYD-RARELAETVG----GHAL----SL------AD--------LENFN  438 (465)
Q Consensus       383 ~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~-~a~~la~~~~----~~~~----~~------~~--------l~~~~  438 (465)
                      .+||+|++ |+|++++.+|+++|++|++++|+.+ .++++++++.    ....    +.      ++        ..+ .
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   81 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFR-A   81 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHH-H
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHH-H
Confidence            68999996 9999999999999999999999854 5566776663    1110    00      00        111 3


Q ss_pred             CCCeeEEEecCCCCC
Q 012352          439 PEDGMILANTTSIGM  453 (465)
Q Consensus       439 ~~~~DilInaT~~gm  453 (465)
                      .+..|++||++++..
T Consensus        82 ~g~iDilvnnAG~~~   96 (266)
T d1mxha_          82 FGRCDVLVNNASAYY   96 (266)
T ss_dssp             HSCCCEEEECCCCCC
T ss_pred             hCCCCEEEECCccCC
Confidence            467999999998764

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.49  E-value=2.7e-05  Score=72.03  Aligned_cols=72  Identities=17%  Similarity=0.279  Sum_probs=50.9

Q ss_pred             cEEEEEccc-hhHHHHHHHHH---HCCCeEEEEECCHHHHHHHHHHH--CCcc----cchhc---cc-------cc-CCC
Q 012352          382 KLFVVIGAG-GAGKALAYGAK---AKGARVVIANRTYDRARELAETV--GGHA----LSLAD---LE-------NF-NPE  440 (465)
Q Consensus       382 k~vlV~GaG-g~g~ai~~~L~---~~G~~v~i~~R~~~~a~~la~~~--~~~~----~~~~~---l~-------~~-~~~  440 (465)
                      |+|||+|++ |+|++++..|.   +.|++|+++.|+.++++++.+..  +.+.    .|+.+   +.       .. ..+
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~   82 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKDQ   82 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhcC
Confidence            789999996 99999999986   46789999999999888776433  2221    23211   11       10 235


Q ss_pred             CeeEEEecCCCCC
Q 012352          441 DGMILANTTSIGM  453 (465)
Q Consensus       441 ~~DilInaT~~gm  453 (465)
                      ..|+|||++++..
T Consensus        83 ~iDiLvnNAg~~~   95 (248)
T d1snya_          83 GLNVLFNNAGIAP   95 (248)
T ss_dssp             CCSEEEECCCCCC
T ss_pred             CcceEEeeccccc
Confidence            6899999988753

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=7.7e-05  Score=69.30  Aligned_cols=48  Identities=31%  Similarity=0.481  Sum_probs=43.4

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHC
Q 012352          378 ALAGKLFVVIGAG-GAGKALAYGAKA---KGARVVIANRTYDRARELAETVG  425 (465)
Q Consensus       378 ~l~~k~vlV~GaG-g~g~ai~~~L~~---~G~~v~i~~R~~~~a~~la~~~~  425 (465)
                      .|++|.++|+|++ |+|++++..|++   .|++|++++|+.++++++++++.
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~   54 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELG   54 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHH
Confidence            4789999999996 999999999986   68999999999999999988773

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.39  E-value=0.0001  Score=64.03  Aligned_cols=72  Identities=22%  Similarity=0.275  Sum_probs=57.3

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCccc----chhcccccCCCCeeEEEecCCC
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL----SLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~----~~~~l~~~~~~~~DilInaT~~  451 (465)
                      ....+|+|+|+|-+|+.++.....+|++|++++++.++.+++.+.++....    .-+.+.+ .+.++|+||+|.-+
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~-~~~~aDivI~aali  105 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIET-AVAEADLLIGAVLV  105 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHH-HHHTCSEEEECCCC
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHH-hhccCcEEEEeeec
Confidence            345799999999999999999999999999999999999999888764321    1122333 45678999999854

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=0.00017  Score=66.42  Aligned_cols=75  Identities=16%  Similarity=0.176  Sum_probs=52.1

Q ss_pred             cCCcEEEEEccc---hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH---CCcc---cch---h-------cccccCC
Q 012352          379 LAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHA---LSL---A-------DLENFNP  439 (465)
Q Consensus       379 l~~k~vlV~GaG---g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~---~~~~---~~~---~-------~l~~~~~  439 (465)
                      |+||+|||+|++   |+|++++..|++.|++|+++.|+.+..+.+.+..   +...   .+.   .       +... ..
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   81 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGK-VW   81 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHT-TC
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhh-cc
Confidence            679999999874   7999999999999999999999865444333222   2111   111   1       1112 45


Q ss_pred             CCeeEEEecCCCCCC
Q 012352          440 EDGMILANTTSIGMQ  454 (465)
Q Consensus       440 ~~~DilInaT~~gm~  454 (465)
                      ...|++||+++....
T Consensus        82 ~~~d~~v~~a~~~~~   96 (258)
T d1qsga_          82 PKFDGFVHSIGFAPG   96 (258)
T ss_dssp             SSEEEEEECCCCCCG
T ss_pred             cccceEEEeeccccc
Confidence            778999999877654

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.38  E-value=0.0002  Score=60.96  Aligned_cols=63  Identities=24%  Similarity=0.331  Sum_probs=48.3

Q ss_pred             EEEEEccchhHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKG-ARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTT  449 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G-~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT  449 (465)
                      ++.++|+|.+|.+++..|.+.| .+|++++|++++++.++++++....+  +..  .+.++|+||=|+
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~--~~~--~v~~~Div~lav   65 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSA--TLP--ELHSDDVLILAV   65 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEES--SCC--CCCTTSEEEECS
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccc--ccc--cccccceEEEec
Confidence            5789999999999999998888 59999999999999999988643221  111  233467776665

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.37  E-value=0.00022  Score=62.47  Aligned_cols=71  Identities=27%  Similarity=0.366  Sum_probs=53.7

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCc-ccchh-----c----cccc-CCCCeeEEEe
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGH-ALSLA-----D----LENF-NPEDGMILAN  447 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~-~~~~~-----~----l~~~-~~~~~DilIn  447 (465)
                      .|.+|+|+|+|++|..++..++..|+ +|+++++++++. +++++++.. .++..     +    +.+. ....+|++|+
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~-~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid  106 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRL-KLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILE  106 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHH-HHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEE
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccccccc-cccccccceEEEeccccchHHHHHHHHHhhCCCCceEEee
Confidence            47899999999999999999999998 899999999986 566788753 22221     1    1111 2346999999


Q ss_pred             cCCC
Q 012352          448 TTSI  451 (465)
Q Consensus       448 aT~~  451 (465)
                      +++.
T Consensus       107 ~vG~  110 (182)
T d1vj0a2         107 ATGD  110 (182)
T ss_dssp             CSSC
T ss_pred             cCCc
Confidence            9875

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.35  E-value=0.00027  Score=61.67  Aligned_cols=72  Identities=25%  Similarity=0.232  Sum_probs=54.6

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCc-ccchhc------cccc-CCCCeeEEEecCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGH-ALSLAD------LENF-NPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~-~~~~~~------l~~~-~~~~~DilInaT~  450 (465)
                      .+.+|+|+|+|++|..++..++..|+ +|++++++++| .+++++++.. .++..+      +.+. ....+|++|+|++
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r-~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g  105 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPIC-VEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGG  105 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHH-HHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSS
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhh-HHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccC
Confidence            46789999999999999999999998 89999999988 5666788853 333221      2221 2245999999998


Q ss_pred             CC
Q 012352          451 IG  452 (465)
Q Consensus       451 ~g  452 (465)
                      ..
T Consensus       106 ~~  107 (174)
T d1jqba2         106 GS  107 (174)
T ss_dssp             CT
T ss_pred             CH
Confidence            64

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=0.00059  Score=58.81  Aligned_cols=71  Identities=25%  Similarity=0.296  Sum_probs=54.6

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchhc---ccccCCCCeeEEEecCCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLAD---LENFNPEDGMILANTTSIG  452 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~~---l~~~~~~~~DilInaT~~g  452 (465)
                      .+.+|+|+|+|++|..++..++..|++++++.++.++. +++++++.. .++..+   ... ..+.+|++|++++..
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~-~~a~~lGad~~i~~~~~~~~~~-~~~~~D~vid~~g~~  104 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKR-EAAKALGADEVVNSRNADEMAA-HLKSFDFILNTVAAP  104 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGH-HHHHHHTCSEEEETTCHHHHHT-TTTCEEEEEECCSSC
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHH-HHHhccCCcEEEECchhhHHHH-hcCCCceeeeeeecc
Confidence            47899999999999999999999999888899988874 677888864 233221   112 346799999998754

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.33  E-value=0.0002  Score=61.22  Aligned_cols=63  Identities=22%  Similarity=0.292  Sum_probs=49.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCccc-chhcccccCCCCeeEEEecC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL-SLADLENFNPEDGMILANTT  449 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~-~~~~l~~~~~~~~DilInaT  449 (465)
                      ++.++|+|-+|.+++..|.+.|.++++++|+.++.++++++++.... +.+++    ..++|+||-|.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~----~~~~dvIilav   65 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDL----IDQVDLVILGI   65 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHH----HHTCSEEEECS
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhh----hhccceeeeec
Confidence            57899999999999999999999999999999999999999875432 22222    12356666555

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.29  E-value=0.00028  Score=60.64  Aligned_cols=67  Identities=21%  Similarity=0.156  Sum_probs=47.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ++.|+|+|-+|.+++..|.+.|++|++++|++++.+.+.+ .+......++++  .+.++|+||-|+|.+
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~-~~~~~~~~~~~~--~~~~~DiIilavp~~   68 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE-RQLVDEAGQDLS--LLQTAKIIFLCTPIQ   68 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-TTSCSEEESCGG--GGTTCSEEEECSCHH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH-hhccceeeeecc--cccccccccccCcHh
Confidence            5889999999999999999999999999999888776543 331100111121  235577777777643

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.27  E-value=0.00026  Score=60.26  Aligned_cols=73  Identities=19%  Similarity=0.329  Sum_probs=52.3

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCCc------c-cchhcccccCCCCeeEEEecCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGH------A-LSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~~------~-~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      .+++.|+|+|.+|.++++.|+..|.  +|+++++++++++..+.++...      . +.-.+. + .+..+|++|.+++.
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~-~-~~~~adivvitag~   82 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY-S-DCKDADLVVITAGA   82 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG-G-GGTTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH-H-HhccccEEEEeccc
Confidence            5689999999999999999999884  8999999999988777655310      0 000111 2 34678999999987


Q ss_pred             CCCC
Q 012352          452 GMQP  455 (465)
Q Consensus       452 gm~~  455 (465)
                      ...+
T Consensus        83 ~~~~   86 (146)
T d1ez4a1          83 PQKP   86 (146)
T ss_dssp             ----
T ss_pred             ccCC
Confidence            6554

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=0.00063  Score=58.66  Aligned_cols=72  Identities=19%  Similarity=0.198  Sum_probs=54.2

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchhc---ccccCCCCeeEEEecCCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLAD---LENFNPEDGMILANTTSIG  452 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~~---l~~~~~~~~DilInaT~~g  452 (465)
                      .+.+|+|+|+|++|..++..++..|++|++++++++|.+ ++++++.. .++..+   ..+.....+|.+|++++.+
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~-~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~  102 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKRE-DAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSL  102 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHH-HHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCS
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHH-HhhccCCcEEeeccchHHHHHhhhcccceEEEEecCC
Confidence            478999999999999999998899999999999988754 56778753 333221   1111345789999987754

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.25  E-value=0.00035  Score=60.77  Aligned_cols=72  Identities=24%  Similarity=0.312  Sum_probs=53.1

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCc-ccch------hcccccCCCCeeEEEecCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGH-ALSL------ADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~-~~~~------~~l~~~~~~~~DilInaT~~  451 (465)
                      .+.+|+|+|+|++|..++..++..|+ .|++++++++|. +++++++.. .++.      +++.+..-+.+|++|++++.
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~-~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~  106 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRL-ELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGS  106 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHH-HHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCC
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHH-HHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCc
Confidence            47799999999999999999999999 778889988874 456778753 3322      11222123469999999986


Q ss_pred             C
Q 012352          452 G  452 (465)
Q Consensus       452 g  452 (465)
                      .
T Consensus       107 ~  107 (174)
T d1f8fa2         107 P  107 (174)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.25  E-value=3.2e-05  Score=71.11  Aligned_cols=36  Identities=14%  Similarity=0.148  Sum_probs=32.4

Q ss_pred             CCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHH
Q 012352          380 AGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYD  415 (465)
Q Consensus       380 ~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~  415 (465)
                      ++|+|||+|++ |+|++++..|++.|++|++++|+..
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            47999999995 9999999999999999999988654

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.24  E-value=0.00045  Score=58.79  Aligned_cols=76  Identities=18%  Similarity=0.269  Sum_probs=55.8

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCC------cccch-hcccccCCCCeeEEEecCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGG------HALSL-ADLENFNPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~------~~~~~-~~l~~~~~~~~DilInaT~  450 (465)
                      .+++|.|+|+|.+|.++++.|+..|.  ++.++++++++++..+.++..      ..... ..-.+ .+.++|+||.+++
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~-~l~daDvvvitag   83 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYD-DCRDADLVVICAG   83 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGG-GTTTCSEEEECCS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHH-HhccceeEEEecc
Confidence            36789999999999999999999885  899999999998877766631      00101 11112 4677999999988


Q ss_pred             CCCCCC
Q 012352          451 IGMQPK  456 (465)
Q Consensus       451 ~gm~~~  456 (465)
                      ....+.
T Consensus        84 ~~~~~~   89 (148)
T d1ldna1          84 ANQKPG   89 (148)
T ss_dssp             CCCCTT
T ss_pred             cccccC
Confidence            765443

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.22  E-value=0.0004  Score=60.72  Aligned_cols=72  Identities=26%  Similarity=0.324  Sum_probs=55.2

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCc-ccchhcc-------cc-cCCCCeeEEEecC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGH-ALSLADL-------EN-FNPEDGMILANTT  449 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~-~~~~~~l-------~~-~~~~~~DilInaT  449 (465)
                      .+.+|+|+|+||+|..++..++..|+ +|++++++++|. +++.+++.. .+...+-       .+ .....+|++|+++
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl-~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~  107 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKF-EKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVI  107 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECS
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHH-HHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeC
Confidence            47899999999999999999999997 899999999985 488889864 2332211       11 0235689999998


Q ss_pred             CCC
Q 012352          450 SIG  452 (465)
Q Consensus       450 ~~g  452 (465)
                      +..
T Consensus       108 g~~  110 (176)
T d1d1ta2         108 GHL  110 (176)
T ss_dssp             CCH
T ss_pred             Cch
Confidence            753

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.21  E-value=0.00011  Score=60.89  Aligned_cols=69  Identities=19%  Similarity=0.232  Sum_probs=51.5

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCccc-----chhcccccCCCCeeEEEecCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL-----SLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~-----~~~~l~~~~~~~~DilInaT~~  451 (465)
                      |+++|+|.|.+|+.++..|.+.|.+|++++.++++.+.+.+... ..+     +.+.+.+..+.++|.+|-+++-
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~-~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~   74 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYAT-HAVIANATEENELLSLGIRNFEYVIVAIGA   74 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCS-EEEECCTTCTTHHHHHTGGGCSEEEECCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCC-cceeeecccchhhhccCCccccEEEEEcCc
Confidence            57899999999999999999999999999999999988765432 111     1112222245678888887764

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.21  E-value=3.1e-05  Score=71.05  Aligned_cols=36  Identities=19%  Similarity=0.182  Sum_probs=31.9

Q ss_pred             CcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHH
Q 012352          381 GKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDR  416 (465)
Q Consensus       381 ~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~  416 (465)
                      .++|||+|++ |+|++++..|++.|++|++++|++++
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~   38 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND   38 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh
Confidence            3578999995 99999999999999999999998653

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=97.21  E-value=3.9e-05  Score=70.71  Aligned_cols=70  Identities=19%  Similarity=0.192  Sum_probs=44.5

Q ss_pred             cEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHH-HHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          382 KLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRA-RELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       382 k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a-~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      |.|||+|++ |+|++++..|++.|++|++++|+.++. .++.+..+......+...+ ..+..|++||+++++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~id~lv~~Ag~~   73 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAK-CSKGMDGLVLCAGLG   73 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHTT-CTTCCSEEEECCCCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHhcCHHHHHHHHHHHHHH-hCCCCcEEEEcCCCC
Confidence            678999985 999999999999999999999875321 1111110000000111122 234689999998765

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=97.21  E-value=0.00097  Score=59.61  Aligned_cols=87  Identities=25%  Similarity=0.350  Sum_probs=62.6

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhc
Q 012352          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLAD  433 (465)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~  433 (465)
                      +.|.+.+++..+...+      ..+++||+|+|-|.|.+|+.++..|.+.|++|++++.+.++..... .++...++.++
T Consensus         6 a~Gv~~~~~~~~~~~g------~~~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~-~~g~~~~~~~~   78 (201)
T d1c1da1           6 AVGVFEAMKATVAHRG------LGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAV-ALGHTAVALED   78 (201)
T ss_dssp             HHHHHHHHHHHHHHTT------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCEECCGGG
T ss_pred             HHHHHHHHHHHHHHhC------CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHH-hhcccccCccc
Confidence            5677777665443211      1369999999999999999999999999999999999988876643 34544444444


Q ss_pred             ccccCCCCeeEEEecCC
Q 012352          434 LENFNPEDGMILANTTS  450 (465)
Q Consensus       434 l~~~~~~~~DilInaT~  450 (465)
                      +-.   .++|+++=|+-
T Consensus        79 ~~~---~~~DI~iPcA~   92 (201)
T d1c1da1          79 VLS---TPCDVFAPCAM   92 (201)
T ss_dssp             GGG---CCCSEEEECSC
T ss_pred             ccc---ccceeeecccc
Confidence            422   35788886653

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.20  E-value=0.0004  Score=60.65  Aligned_cols=72  Identities=19%  Similarity=0.277  Sum_probs=55.3

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCcc-cchhcc-------c-ccCCCCeeEEEecC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGHA-LSLADL-------E-NFNPEDGMILANTT  449 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~~-~~~~~l-------~-~~~~~~~DilInaT  449 (465)
                      .+.+|+|+|+|++|..++..++..|+ +|++++++++| .+++++++... ++....       . ....+.+|++|+|+
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r-~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~  106 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEK-FPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCA  106 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG-HHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHH-HHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEec
Confidence            46799999999999999999999999 79999999888 57888898642 222111       0 11235789999999


Q ss_pred             CCC
Q 012352          450 SIG  452 (465)
Q Consensus       450 ~~g  452 (465)
                      +..
T Consensus       107 G~~  109 (174)
T d1e3ia2         107 GTA  109 (174)
T ss_dssp             CCH
T ss_pred             ccc
Confidence            864

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=0.00015  Score=56.73  Aligned_cols=74  Identities=15%  Similarity=0.130  Sum_probs=47.8

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchhcccccCCCCeeEEEecCCCCC
Q 012352          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       378 ~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      ++++|+++|+|.|.+|++++..|.+.|++|++++.+....  ..+++... ...+....+..+.++|+||-+.++..
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~vi~SPGi~~   76 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP--GLDKLPEAVERHTGSLNDEWLMAADLIVASPGIAL   76 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCT--TGGGSCTTSCEEESBCCHHHHHHCSEEEECTTSCT
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCch--hHHHHhhccceeecccchhhhccCCEEEECCCCCC
Confidence            4789999999999999999999999999999999754311  01111111 01111111101245789998877653

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00043  Score=59.85  Aligned_cols=72  Identities=26%  Similarity=0.314  Sum_probs=53.7

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCcc-cch-----hcc----cccCCCCeeEEEec
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGHA-LSL-----ADL----ENFNPEDGMILANT  448 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~~-~~~-----~~l----~~~~~~~~DilIna  448 (465)
                      .+.+|+|+|+|++|..++..+...|+ +|++++++++|.+ ++++++... ...     .+.    .......+|++|++
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~-~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~  104 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLS-KAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIEC  104 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHH-HHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEEC
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHH-HHHHhCCcccccccccccccccccccccCCCCceEEEec
Confidence            46789999999999999999999999 8999999988855 678887642 111     111    11023468999999


Q ss_pred             CCCC
Q 012352          449 TSIG  452 (465)
Q Consensus       449 T~~g  452 (465)
                      ++..
T Consensus       105 ~G~~  108 (171)
T d1pl8a2         105 TGAE  108 (171)
T ss_dssp             SCCH
T ss_pred             cCCc
Confidence            9853

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.19  E-value=0.00062  Score=58.71  Aligned_cols=77  Identities=16%  Similarity=0.195  Sum_probs=57.5

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCC-cc-------cchhcccccCCCCeeEEEe
Q 012352          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGG-HA-------LSLADLENFNPEDGMILAN  447 (465)
Q Consensus       378 ~l~~k~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~-~~-------~~~~~l~~~~~~~~DilIn  447 (465)
                      .+..++|.|+|+|.+|.++++.|...|.  ++.++++++++++..+.++.. ..       +...+. + .+.++|+||.
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~-~-~~~~adiVVi   94 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDY-S-VTANSKIVVV   94 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSG-G-GGTTCSEEEE
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccch-h-hcccccEEEE
Confidence            3556899999999999999999999995  899999999998877766631 10       111111 2 3567899999


Q ss_pred             cCCCCCCCC
Q 012352          448 TTSIGMQPK  456 (465)
Q Consensus       448 aT~~gm~~~  456 (465)
                      +++....|.
T Consensus        95 tAg~~~~~g  103 (160)
T d1i0za1          95 TAGVRQQEG  103 (160)
T ss_dssp             CCSCCCCTT
T ss_pred             ecCCccccC
Confidence            998765543

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.19  E-value=0.00021  Score=61.52  Aligned_cols=41  Identities=20%  Similarity=0.300  Sum_probs=37.9

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET  423 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~  423 (465)
                      +|-|+|.|-||++++..|.+.|++|+++||++++++.+.+.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~   42 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAA   42 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHh
Confidence            47899999999999999999999999999999999888754

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.19  E-value=0.00053  Score=59.02  Aligned_cols=72  Identities=28%  Similarity=0.325  Sum_probs=53.3

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc-cch-------h----cccccCCCCeeEEEe
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA-LSL-------A----DLENFNPEDGMILAN  447 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~-~~~-------~----~l~~~~~~~~DilIn  447 (465)
                      .+.+|+|+|+|++|..++..++..|++|++++++++|. +++++++... +.+       .    .+.+.....+|++|+
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~-~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid  104 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRL-EVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTID  104 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEE
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHH-HHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeee
Confidence            46789999999999999999999999999999999985 5666776532 111       1    111112346899999


Q ss_pred             cCCCC
Q 012352          448 TTSIG  452 (465)
Q Consensus       448 aT~~g  452 (465)
                      +++..
T Consensus       105 ~~g~~  109 (170)
T d1e3ja2         105 CSGNE  109 (170)
T ss_dssp             CSCCH
T ss_pred             cCCCh
Confidence            99753

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=97.18  E-value=8.5e-05  Score=63.18  Aligned_cols=62  Identities=29%  Similarity=0.344  Sum_probs=40.3

Q ss_pred             EEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCC
Q 012352          385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       385 lV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~  450 (465)
                      =++|+|.+|++++..|.+.+..+.|+||+++++++++++++....+..   + ...+.|+||-|.|
T Consensus         3 gfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~---~-~~~~~DiVil~v~   64 (153)
T d2i76a2           3 NFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLE---K-HPELNGVVFVIVP   64 (153)
T ss_dssp             EEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSC---C-CCC---CEEECSC
T ss_pred             EEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchh---h-hhccCcEEEEecc
Confidence            479999999999998866333457999999999999998875332221   2 2334555555554

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=4.1e-05  Score=68.44  Aligned_cols=70  Identities=19%  Similarity=0.159  Sum_probs=50.3

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc--cch---hcccccCCCCeeEEEecCCCC
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA--LSL---ADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~--~~~---~~l~~~~~~~~DilInaT~~g  452 (465)
                      .|+|+|+|+ |.+|++++..|.+.|++|+++.|++++....... +...  .++   +++.+ .+.+.|+||++++..
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~-~~~~~~gD~~d~~~l~~-al~~~d~vi~~~g~~   78 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPR-PAHVVVGDVLQAADVDK-TVAGQDAVIVLLGTR   78 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCC-CSEEEESCTTSHHHHHH-HHTTCSEEEECCCCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhccccccc-ccccccccccchhhHHH-HhcCCCEEEEEeccC
Confidence            578999997 7899999999999999999999998875433210 1111  132   23333 456789999998754

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.12  E-value=0.00059  Score=59.41  Aligned_cols=72  Identities=24%  Similarity=0.273  Sum_probs=54.2

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCc-ccchhccc--------ccCCCCeeEEEecC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGH-ALSLADLE--------NFNPEDGMILANTT  449 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~-~~~~~~l~--------~~~~~~~DilInaT  449 (465)
                      .+.+|+|+|+||+|..++..++..|+ +|++++++++|. +++++++.. .++..+.+        ...-+.+|++|+++
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl-~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~~  105 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKF-PKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECA  105 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH-HHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHH-HHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEcC
Confidence            47899999999999999999999998 899999998885 667788864 23322111        11234689999998


Q ss_pred             CCC
Q 012352          450 SIG  452 (465)
Q Consensus       450 ~~g  452 (465)
                      +..
T Consensus       106 g~~  108 (174)
T d1p0fa2         106 GRI  108 (174)
T ss_dssp             CCH
T ss_pred             CCc
Confidence            754

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=0.00084  Score=57.81  Aligned_cols=76  Identities=21%  Similarity=0.218  Sum_probs=57.0

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCCc-------c-cchhcccccCCCCeeEEEec
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGH-------A-LSLADLENFNPEDGMILANT  448 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~~-------~-~~~~~l~~~~~~~~DilIna  448 (465)
                      ++..+|.|+|+|.+|..+++.|...|.  ++.++++++++++..+.++...       . ....+. + ...++|+||.+
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-~-~~~~adivvit   94 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-N-VSANSKLVIIT   94 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-G-GGTTEEEEEEC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-h-hhccccEEEEe
Confidence            455689999999999999999999985  7999999999988777666310       0 111122 2 34679999999


Q ss_pred             CCCCCCCC
Q 012352          449 TSIGMQPK  456 (465)
Q Consensus       449 T~~gm~~~  456 (465)
                      ++....|.
T Consensus        95 ag~~~~~~  102 (159)
T d2ldxa1          95 AGARMVSG  102 (159)
T ss_dssp             CSCCCCTT
T ss_pred             cccccCCC
Confidence            98876654

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00033  Score=62.21  Aligned_cols=40  Identities=35%  Similarity=0.391  Sum_probs=36.2

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELA  421 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la  421 (465)
                      |+|.|+|+|-||+++|..++..|++|++++++++..+...
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~   44 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSK   44 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHH
Confidence            7999999999999999999999999999999998665543

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.07  E-value=0.00042  Score=59.56  Aligned_cols=42  Identities=19%  Similarity=0.218  Sum_probs=38.2

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET  423 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~  423 (465)
                      ++|-++|.|-||.+++..|.+.|++|+++||+.++.+.+...
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~   43 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAA   43 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhh
Confidence            479999999999999999999999999999999998877543

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.07  E-value=0.00061  Score=58.57  Aligned_cols=70  Identities=9%  Similarity=0.133  Sum_probs=47.6

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      |+++|+|.|-+|.+++++|.+.|.  +|+.++|+++..+.+.+ .+.......+........+|+||-|+|..
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~dlIila~p~~   73 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD-LGIIDEGTTSIAKVEDFSPDFVMLSSPVR   73 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH-TTSCSEEESCGGGGGGTCCSEEEECSCHH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH-hhcchhhhhhhhhhhccccccccccCCch
Confidence            479999999999999999999996  89999999887665443 33210001111111223578888888854

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.05  E-value=0.00019  Score=63.66  Aligned_cols=69  Identities=23%  Similarity=0.233  Sum_probs=51.2

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC-cc---cch-------hcccccCCCCeeEEEecCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-HA---LSL-------ADLENFNPEDGMILANTTS  450 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~-~~---~~~-------~~l~~~~~~~~DilInaT~  450 (465)
                      +++.|+|+|..|.|++..|++.|.+|++|.|+++.++++.+.-.. ..   +.+       .++.+ .+.++|+||-|+|
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~-a~~~ad~iiiavP   86 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEK-AYNGAEIILFVIP   86 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHH-HHTTCSCEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhh-ccCCCCEEEEcCc
Confidence            579999999999999999999999999999999999888765321 11   111       12222 3456788888877


Q ss_pred             C
Q 012352          451 I  451 (465)
Q Consensus       451 ~  451 (465)
                      .
T Consensus        87 s   87 (189)
T d1n1ea2          87 T   87 (189)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00033  Score=66.05  Aligned_cols=75  Identities=17%  Similarity=0.248  Sum_probs=47.2

Q ss_pred             cEEEEEccc-hhHHHHHHHHHHCCCeEE---EEECCHHH---HHHHHHHHCC---cc----cchhc---c----cccCCC
Q 012352          382 KLFVVIGAG-GAGKALAYGAKAKGARVV---IANRTYDR---ARELAETVGG---HA----LSLAD---L----ENFNPE  440 (465)
Q Consensus       382 k~vlV~GaG-g~g~ai~~~L~~~G~~v~---i~~R~~~~---a~~la~~~~~---~~----~~~~~---l----~~~~~~  440 (465)
                      |.|||+|++ |+|++++..|++.|++++   +..|+.++   ..+.++++..   ..    .|+.+   +    .....+
T Consensus         3 kVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~g   82 (285)
T d1jtva_           3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTEG   82 (285)
T ss_dssp             EEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTTS
T ss_pred             CEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhcccc
Confidence            556777885 999999999999998644   44665544   3444555432   11    22211   1    111235


Q ss_pred             CeeEEEecCCCCCCCC
Q 012352          441 DGMILANTTSIGMQPK  456 (465)
Q Consensus       441 ~~DilInaT~~gm~~~  456 (465)
                      ..|++||+++.+....
T Consensus        83 ~idilvnnag~~~~~~   98 (285)
T d1jtva_          83 RVDVLVCNAGLGLLGP   98 (285)
T ss_dssp             CCSEEEECCCCCCCSC
T ss_pred             chhhhhhccccccccc
Confidence            7999999998876543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.00  E-value=0.00042  Score=60.35  Aligned_cols=43  Identities=21%  Similarity=0.271  Sum_probs=39.7

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET  423 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~  423 (465)
                      .++|-|+|.|-||.+++..|.+.|++|++|||++++++++.+.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~   44 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN   44 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHh
Confidence            3578999999999999999999999999999999999998765

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.96  E-value=0.001  Score=57.25  Aligned_cols=71  Identities=23%  Similarity=0.326  Sum_probs=53.2

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCc-ccchhc----c----cccCCCCeeEEEecC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGH-ALSLAD----L----ENFNPEDGMILANTT  449 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~-~~~~~~----l----~~~~~~~~DilInaT  449 (465)
                      .+.+|+|.|+||+|..++..++..|+ .|+++++++++ .+++++++.. .++..+    +    .......+|++|+++
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k-~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~  106 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDK-FARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECI  106 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG-HHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHH-HHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecC
Confidence            47799999999999999999999998 78888888887 5678889854 233321    1    111235799999998


Q ss_pred             CC
Q 012352          450 SI  451 (465)
Q Consensus       450 ~~  451 (465)
                      +.
T Consensus       107 G~  108 (176)
T d2fzwa2         107 GN  108 (176)
T ss_dssp             CC
T ss_pred             CC
Confidence            74

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.95  E-value=0.0013  Score=55.54  Aligned_cols=72  Identities=22%  Similarity=0.337  Sum_probs=52.8

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCC-------cccc-hhcccccCCCCeeEEEecCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGG-------HALS-LADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~-------~~~~-~~~l~~~~~~~~DilInaT~~  451 (465)
                      .++.|+|+|.+|.++++.|...|.  ++.++++++++++..+.++..       ..+. .++. + .+.++|+||.+++.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~-~~~daDvVVitaG~   79 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-E-ICRDADMVVITAGP   79 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-G-GGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-H-HhhCCcEEEEeccc
Confidence            478999999999999999999985  899999999888776555431       0111 1122 2 35678999999987


Q ss_pred             CCCC
Q 012352          452 GMQP  455 (465)
Q Consensus       452 gm~~  455 (465)
                      .-.|
T Consensus        80 ~~~~   83 (143)
T d1llda1          80 RQKP   83 (143)
T ss_dssp             CCCT
T ss_pred             ccCC
Confidence            6543

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.93  E-value=0.00081  Score=57.05  Aligned_cols=70  Identities=19%  Similarity=0.203  Sum_probs=52.1

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCCc--c------cchhcccccCCCCeeEEEecCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGH--A------LSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~~--~------~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      |++.|+|+|.+|.++++.|...|.  ++.++++++++++..+.++...  .      +...+ .+ .+.++|+||-+++.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d-~~-~l~~adiVVitaG~   79 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND-WA-ALADADVVISTLGN   79 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC-GG-GGTTCSEEEECCSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccC-HH-HhccccEEEEeccc
Confidence            789999999999999999999884  8999999999988766555310  0      11111 12 35678999999886


Q ss_pred             CC
Q 012352          452 GM  453 (465)
Q Consensus       452 gm  453 (465)
                      .-
T Consensus        80 ~~   81 (146)
T d1hyha1          80 IK   81 (146)
T ss_dssp             GG
T ss_pred             cc
Confidence            43

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=96.93  E-value=0.0028  Score=57.64  Aligned_cols=91  Identities=19%  Similarity=0.217  Sum_probs=66.5

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhc
Q 012352          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLAD  433 (465)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~  433 (465)
                      +.|.+.+++..+....     ...++++|+|+|-|.|.+|+.++..|.+.|++|++++.+..+.+.+....+...++.++
T Consensus        17 g~GV~~~~~~~~~~~~-----g~~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~~~~~   91 (230)
T d1leha1          17 AYGVYRGMKAAAKEAF-----GSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNA   91 (230)
T ss_dssp             HHHHHHHHHHHHHHHH-----SSCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGG
T ss_pred             HHHHHHHHHHHHHHhc-----CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcccCCcc
Confidence            5666666554332100     02468999999999999999999999999999999999999999998888765544443


Q ss_pred             ccccCCCCeeEEEecCCCC
Q 012352          434 LENFNPEDGMILANTTSIG  452 (465)
Q Consensus       434 l~~~~~~~~DilInaT~~g  452 (465)
                      +-.   .++||++=|+--+
T Consensus        92 ~~~---~~cDIl~PcA~~~  107 (230)
T d1leha1          92 IYG---VTCDIFAPCALGA  107 (230)
T ss_dssp             TTT---CCCSEEEECSCSC
T ss_pred             ccc---ccccEeccccccc
Confidence            322   3578887776443

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.92  E-value=0.00095  Score=56.86  Aligned_cols=74  Identities=16%  Similarity=0.141  Sum_probs=55.1

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCc--------ccchhcccccCCCCeeEEEecCCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGH--------ALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~--------~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      .++.|+|+|.+|.++++.|...+. ++.++++++++++..+.++...        .+...+..+ .+.++|++|.+++..
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~-~~~~advvvitag~~   82 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYD-DLAGADVVIVTAGFT   82 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGG-GGTTCSEEEECCSCS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEeccccc-ccCCCcEEEEecccc
Confidence            589999999999999998888887 9999999998888776665321        011111222 456799999999987


Q ss_pred             CCCC
Q 012352          453 MQPK  456 (465)
Q Consensus       453 m~~~  456 (465)
                      ..|.
T Consensus        83 ~~~g   86 (150)
T d1t2da1          83 KAPG   86 (150)
T ss_dssp             SCTT
T ss_pred             cCCC
Confidence            6543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.90  E-value=0.0012  Score=57.02  Aligned_cols=72  Identities=24%  Similarity=0.329  Sum_probs=53.8

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCc-ccchhc----c----cccCCCCeeEEEecC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGH-ALSLAD----L----ENFNPEDGMILANTT  449 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~-~~~~~~----l----~~~~~~~~DilInaT  449 (465)
                      .|.+|+|+|+||.|..++..++..|+ +|++++++++|. +++.+++.. .+...+    +    .....+.+|++|+++
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~-~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~~  106 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKF-AKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVI  106 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHH-HHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEecC
Confidence            47899999999999999999999997 999999999984 466777653 222211    1    111335789999998


Q ss_pred             CCC
Q 012352          450 SIG  452 (465)
Q Consensus       450 ~~g  452 (465)
                      +..
T Consensus       107 G~~  109 (176)
T d2jhfa2         107 GRL  109 (176)
T ss_dssp             CCH
T ss_pred             Cch
Confidence            764

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.0018  Score=56.77  Aligned_cols=37  Identities=38%  Similarity=0.512  Sum_probs=34.0

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       378 ~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      ....|+|+|+|+|.+|.++|..|+++|.+|+|+.++.
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence            3567999999999999999999999999999999864

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.88  E-value=0.00058  Score=58.47  Aligned_cols=76  Identities=16%  Similarity=0.152  Sum_probs=55.2

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCC-------cc-cch-hcccccCCCCeeEEEecC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGG-------HA-LSL-ADLENFNPEDGMILANTT  449 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~-------~~-~~~-~~l~~~~~~~~DilInaT  449 (465)
                      +.+++.|+|+|.+|..+++.|+..+. ++++++.++++++..+..+..       .. ... .+..+ .+..+|+||.++
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~adiVvita   84 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEA-ALTGADCVIVTA   84 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHH-HHTTCSEEEECC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhh-hhcCCCeEEEec
Confidence            46799999999999999999998887 999999998888777665531       10 000 11112 345789999999


Q ss_pred             CCCCCCC
Q 012352          450 SIGMQPK  456 (465)
Q Consensus       450 ~~gm~~~  456 (465)
                      +.+-.|.
T Consensus        85 g~~~~~g   91 (154)
T d1pzga1          85 GLTKVPG   91 (154)
T ss_dssp             SCSSCTT
T ss_pred             ccccCCC
Confidence            8876543

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.88  E-value=0.00071  Score=64.86  Aligned_cols=42  Identities=12%  Similarity=0.188  Sum_probs=35.9

Q ss_pred             CcEEEEEccc---hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Q 012352          381 GKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYDRARELAE  422 (465)
Q Consensus       381 ~k~vlV~GaG---g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~  422 (465)
                      +|.+||+|+|   |+|++++.+|+++|++|++..|+.........
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~   46 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKN   46 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHH
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHH
Confidence            6899999965   99999999999999999999998766555443

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.87  E-value=0.0016  Score=54.63  Aligned_cols=73  Identities=18%  Similarity=0.182  Sum_probs=52.8

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCC------cccchhcccccCCCCeeEEEecCCCCCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGG------HALSLADLENFNPEDGMILANTTSIGMQ  454 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~------~~~~~~~l~~~~~~~~DilInaT~~gm~  454 (465)
                      ++.|+|+|.+|.++++.|+..+.  ++.++++++++++..+.++..      ...-.....+ .+.++|+||.+++....
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~-~~~~adivvitag~~~~   80 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYA-DLKGSDVVIVAAGVPQK   80 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGG-GGTTCSEEEECCCCCCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHH-HhcCCCEEEEecccccC
Confidence            57899999999999999988884  899999999988876655431      0000111122 35679999999988765


Q ss_pred             CC
Q 012352          455 PK  456 (465)
Q Consensus       455 ~~  456 (465)
                      +.
T Consensus        81 ~g   82 (140)
T d1a5za1          81 PG   82 (140)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.86  E-value=0.00074  Score=56.98  Aligned_cols=74  Identities=18%  Similarity=0.191  Sum_probs=49.0

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCCc-c-----cchhcccccCCCCeeEEEecCCCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGH-A-----LSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~~-~-----~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      +++.|+|+|.+|.++++.|...+.  ++.++++++++++..+.++... .     .......+ .+.++|+||.+++...
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~-~~~~adivvitag~~~   80 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYS-DVKDCDVIVVTAGANR   80 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGG-GGTTCSEEEECCCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHH-HhCCCceEEEeccccc
Confidence            478899999999999999999885  8999999999887777766521 0     00111122 4567899999998775


Q ss_pred             CCC
Q 012352          454 QPK  456 (465)
Q Consensus       454 ~~~  456 (465)
                      .+.
T Consensus        81 ~~~   83 (142)
T d1y6ja1          81 KPG   83 (142)
T ss_dssp             ---
T ss_pred             CcC
Confidence            443

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=96.80  E-value=0.00036  Score=62.32  Aligned_cols=41  Identities=17%  Similarity=0.304  Sum_probs=36.7

Q ss_pred             cccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHH
Q 012352          375 VSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYD  415 (465)
Q Consensus       375 ~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~  415 (465)
                      .+..+.+|++.|+|.|.+|+.++..|..+|++|+.+++...
T Consensus        37 ~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~   77 (197)
T d1j4aa1          37 IGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN   77 (197)
T ss_dssp             CBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cCccccCCeEEEecccccchhHHHhHhhhcccccccCcccc
Confidence            34678999999999999999999999999999999997644

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.79  E-value=0.0032  Score=54.14  Aligned_cols=72  Identities=15%  Similarity=0.238  Sum_probs=52.0

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCc-ccchh-----cccc-cCCCCeeEEEecCCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGH-ALSLA-----DLEN-FNPEDGMILANTTSI  451 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~-~~~~~-----~l~~-~~~~~~DilInaT~~  451 (465)
                      .+.+|+|+|+|++|..++..+...|+ +|++++++++|.+ ++++++.. .++..     ...+ .....+|++|++++.
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~-~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~  110 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLK-LAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGS  110 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHH-HHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCC
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHH-HHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCc
Confidence            36799999999999999999988998 8888999988855 55566643 23221     1111 123469999999975


Q ss_pred             C
Q 012352          452 G  452 (465)
Q Consensus       452 g  452 (465)
                      .
T Consensus       111 ~  111 (172)
T d1h2ba2         111 Q  111 (172)
T ss_dssp             H
T ss_pred             c
Confidence            3

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.78  E-value=0.00071  Score=58.63  Aligned_cols=70  Identities=23%  Similarity=0.260  Sum_probs=52.0

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchhcccc-c-CCCCeeEEEecCC
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLADLEN-F-NPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~~l~~-~-~~~~~DilInaT~  450 (465)
                      .+++|+|.|+ |++|.+++..++..|++|+.+.+++++.+ ++.+++.. .+++.+..+ . ....+|++|++++
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~-~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G  100 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA-LPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG  100 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSH-HHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSC
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccccc-cccccccceeeehhhhhhhhhccccccccccccc
Confidence            5789999996 89999999999999999999999887754 45677753 344433211 0 2457999999876

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.77  E-value=0.0023  Score=54.62  Aligned_cols=47  Identities=28%  Similarity=0.419  Sum_probs=40.8

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH  427 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~  427 (465)
                      .+.+|+|+|+|++|..++..++..|++|+++++++++. +++++++..
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~-~~a~~~Ga~   73 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKL-ELARKLGAS   73 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHTTCS
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHH-HhhhccCcc
Confidence            47899999999999999999999999999999998885 456778753

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.77  E-value=0.0023  Score=56.56  Aligned_cols=71  Identities=23%  Similarity=0.250  Sum_probs=52.6

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCccc-c-----h-hccccc-CCCCeeEEEecCC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGHAL-S-----L-ADLENF-NPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~~~-~-----~-~~l~~~-~~~~~DilInaT~  450 (465)
                      .+.+|+|+|+|++|..++..++..|+ +|++++++++|. +++++++...+ .     + +.+.+. ....+|++|++++
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl-~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG  103 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARL-AHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVG  103 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhh-HhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECcc
Confidence            47899999999999999988888998 899999998885 56778875432 1     1 111111 2346899999987


Q ss_pred             C
Q 012352          451 I  451 (465)
Q Consensus       451 ~  451 (465)
                      .
T Consensus       104 ~  104 (195)
T d1kola2         104 F  104 (195)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.75  E-value=0.00064  Score=59.81  Aligned_cols=65  Identities=20%  Similarity=0.167  Sum_probs=48.0

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       378 ~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      .+.+|++.|+|.|.+|+.++..+...|++|++++|++...         .....+++++ .+.++|+|+.++|..
T Consensus        39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~---------~~~~~~~l~e-ll~~sDiv~~~~pl~  103 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG---------PWRFTNSLEE-ALREARAAVCALPLN  103 (181)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCS---------SSCCBSCSHH-HHTTCSEEEECCCCS
T ss_pred             cccCceEEEeccccccccceeeeecccccccccccccccc---------ceeeeechhh-hhhccchhhcccccc
Confidence            4789999999999999999999999999999999975321         0111123333 345677888777764

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=96.74  E-value=0.0012  Score=60.76  Aligned_cols=74  Identities=20%  Similarity=0.302  Sum_probs=50.4

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCC-eEEEEECCH---HHHHHHHHHH---CCcc----cchhc---cc---c-c-CCC
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGA-RVVIANRTY---DRARELAETV---GGHA----LSLAD---LE---N-F-NPE  440 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~-~v~i~~R~~---~~a~~la~~~---~~~~----~~~~~---l~---~-~-~~~  440 (465)
                      ++++||+|+ ||+|++++..|++.|+ +|++++|+.   +.++++.+++   +...    .|+.+   +.   + . ...
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~~   88 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDDV   88 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTTS
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhccccccc
Confidence            568999997 5999999999999999 799999974   3455555554   2221    12211   11   1 0 224


Q ss_pred             CeeEEEecCCCCCC
Q 012352          441 DGMILANTTSIGMQ  454 (465)
Q Consensus       441 ~~DilInaT~~gm~  454 (465)
                      ..|.|||+++....
T Consensus        89 ~i~~vv~~ag~~~~  102 (259)
T d2fr1a1          89 PLSAVFHAAATLDD  102 (259)
T ss_dssp             CEEEEEECCCCCCC
T ss_pred             cccccccccccccc
Confidence            68999999987643

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.70  E-value=0.0021  Score=54.02  Aligned_cols=72  Identities=18%  Similarity=0.196  Sum_probs=52.3

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCC------c--ccch-hcccccCCCCeeEEEecCCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGG------H--ALSL-ADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~------~--~~~~-~~l~~~~~~~~DilInaT~~  451 (465)
                      ++.|+|+|.+|.++++.|+..|.  ++.++++++++++..+-++..      .  .+.. .+. + .+..+|+||.+++.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~-~-~~~~adiVvitag~   79 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-S-LLKGSEIIVVTAGL   79 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG-G-GGTTCSEEEECCCC
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH-H-HhccccEEEEeccc
Confidence            68899999999999999998885  899999999988765544421      1  0111 122 2 45678999999987


Q ss_pred             CCCCC
Q 012352          452 GMQPK  456 (465)
Q Consensus       452 gm~~~  456 (465)
                      +..|.
T Consensus        80 ~~~~g   84 (142)
T d1ojua1          80 ARKPG   84 (142)
T ss_dssp             CCCSS
T ss_pred             cCCCC
Confidence            76543

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.63  E-value=0.00059  Score=61.71  Aligned_cols=36  Identities=33%  Similarity=0.493  Sum_probs=32.9

Q ss_pred             CcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHH
Q 012352          381 GKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDR  416 (465)
Q Consensus       381 ~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~  416 (465)
                      +|+|||+|++ |+|++++..|+++|++|++++|+.+.
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            4899999995 99999999999999999999998664

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.62  E-value=0.0022  Score=53.75  Aligned_cols=72  Identities=18%  Similarity=0.202  Sum_probs=51.5

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCCc-------c-cchhcccccCCCCeeEEEecCCCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGH-------A-LSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~~-------~-~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      ++.|+|+|.+|.++++.|+..|.  ++.++++++++++..+..+...       . +...+..+ .+.++|++|.+++..
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~-~~~dadvvvitag~~   80 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYA-DTANSDIVIITAGLP   80 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGG-GGTTCSEEEECCSCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHH-HhcCCeEEEEEEecC
Confidence            58899999999999999999984  8999999998877665443210       0 11111122 457899999998875


Q ss_pred             CCC
Q 012352          453 MQP  455 (465)
Q Consensus       453 m~~  455 (465)
                      ..+
T Consensus        81 ~~~   83 (142)
T d1guza1          81 RKP   83 (142)
T ss_dssp             CCT
T ss_pred             CCC
Confidence            443

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.59  E-value=0.001  Score=58.72  Aligned_cols=71  Identities=14%  Similarity=0.022  Sum_probs=47.7

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCCcccch---hcccccCCCCeeEEEecCCCCC
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGHALSL---ADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~~~~~~---~~l~~~~~~~~DilInaT~~gm  453 (465)
                      ++|||+|+ |.+|++++..|.+.|.  .|+...|++++...+...+.....++   +++.+ .+.++|.||++++...
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~d~vi~~a~~~~   80 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINP-AFQGIDALVILTSAVP   80 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHH-HHTTCSEEEECCCCCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeecccccccc-ccccceeeEEEEeecc
Confidence            68999996 7999999999999996  46667899887655432111111122   22223 3567899999986543

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.59  E-value=0.0008  Score=58.86  Aligned_cols=69  Identities=20%  Similarity=0.263  Sum_probs=46.6

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHH--HHHHHHHHHCCcc----------cchhcccccCCCCeeEEEecCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYD--RARELAETVGGHA----------LSLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~--~a~~la~~~~~~~----------~~~~~l~~~~~~~~DilInaT~  450 (465)
                      +|.|+|+|..|.+++..|++.|.+|++|+|+.+  ..+.+.+......          ...+++.+ .+..+|+||.|+|
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~ad~Ii~avp   80 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEK-CLENAEVVLLGVS   80 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHH-HHTTCSEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHH-HHhccchhhcccc
Confidence            588999999999999999999999999999543  3444432211000          01123333 3456899999988


Q ss_pred             CC
Q 012352          451 IG  452 (465)
Q Consensus       451 ~g  452 (465)
                      ..
T Consensus        81 s~   82 (180)
T d1txga2          81 TD   82 (180)
T ss_dssp             GG
T ss_pred             hh
Confidence            54

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=96.54  E-value=0.0029  Score=54.39  Aligned_cols=72  Identities=21%  Similarity=0.256  Sum_probs=53.4

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCc-ccchhcc-------cc-cCCCCeeEEEecC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGH-ALSLADL-------EN-FNPEDGMILANTT  449 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~-~~~~~~l-------~~-~~~~~~DilInaT  449 (465)
                      .+.+|+|+|+||.|..++..++..|+ +|++++++++|. +++.+++.. .+++.+-       .. .....+|++|+++
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl-~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid~~  106 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKF-EKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECV  106 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECS
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHH-HHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeeeec
Confidence            46789999999999999999999998 899999998885 567788853 3333211       11 0234689999998


Q ss_pred             CCC
Q 012352          450 SIG  452 (465)
Q Consensus       450 ~~g  452 (465)
                      +..
T Consensus       107 G~~  109 (175)
T d1cdoa2         107 GNV  109 (175)
T ss_dssp             CCH
T ss_pred             CCH
Confidence            753

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.48  E-value=0.0089  Score=50.93  Aligned_cols=72  Identities=19%  Similarity=0.265  Sum_probs=51.8

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCcc-cch------hccccc-CCCCeeEEEecC
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGHA-LSL------ADLENF-NPEDGMILANTT  449 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~~-~~~------~~l~~~-~~~~~DilInaT  449 (465)
                      .+.+|+|+|+ |++|..++..++..|+ +|+++.+++++ .+++++++... ++.      +++.+. ..+.+|++|+++
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~-~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~  105 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEA-VEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLN  105 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHH-HHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESC
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhh-HHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhccc
Confidence            4678999995 8999999999998997 99999999887 45556777532 221      111111 234599999998


Q ss_pred             CCC
Q 012352          450 SIG  452 (465)
Q Consensus       450 ~~g  452 (465)
                      +..
T Consensus       106 g~~  108 (170)
T d1jvba2         106 NSE  108 (170)
T ss_dssp             CCH
T ss_pred             ccc
Confidence            753

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.45  E-value=0.0022  Score=53.90  Aligned_cols=72  Identities=18%  Similarity=0.168  Sum_probs=51.7

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCc------c--cch-hcccccCCCCeeEEEecCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGH------A--LSL-ADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~------~--~~~-~~l~~~~~~~~DilInaT~~  451 (465)
                      |++.|+|+|.+|.++++.|+..+. ++.+++.++++++..+.++...      .  +.. .+. + .+.++|++|-+++.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~-~-~~~~advvvitag~   79 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-A-DTANSDVIVVTSGA   79 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-G-GGTTCSEEEECCSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcH-H-HhcCCCEEEEeeec
Confidence            589999999999999999998887 9999999988887766655311      0  111 112 2 34678999999987


Q ss_pred             CCCC
Q 012352          452 GMQP  455 (465)
Q Consensus       452 gm~~  455 (465)
                      ...|
T Consensus        80 ~~~~   83 (142)
T d1uxja1          80 PRKP   83 (142)
T ss_dssp             C---
T ss_pred             cCCc
Confidence            6544

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.45  E-value=0.0016  Score=56.38  Aligned_cols=43  Identities=33%  Similarity=0.480  Sum_probs=40.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVG  425 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~  425 (465)
                      ++-|||.|-+|.+++..|.+.|++|++|||++++++.+.+...
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~   45 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANA   45 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTT
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCC
Confidence            4789999999999999999999999999999999999988764

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.0035  Score=53.96  Aligned_cols=70  Identities=23%  Similarity=0.326  Sum_probs=51.7

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchhc------ccc-cCCCCeeEEEecCC
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLAD------LEN-FNPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~~------l~~-~~~~~~DilInaT~  450 (465)
                      .+.+|||+|+ |++|.+++..+...|++|+++.+++++. +++.+++.. .++..+      +.+ .....+|+++++++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~-~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g  106 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQ-KIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLA  106 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCH
T ss_pred             CCCEEEEEeccccccccccccccccCccccccccccccc-ccccccCcccccccccccHHHHhhhhhccCCceEEeeccc
Confidence            4789999996 8999999999999999999998888774 566678753 333221      111 12356999999875

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.44  E-value=0.001  Score=58.60  Aligned_cols=42  Identities=31%  Similarity=0.335  Sum_probs=37.2

Q ss_pred             ccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHH
Q 012352          376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRA  417 (465)
Q Consensus       376 ~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a  417 (465)
                      +..+.+|++.|+|.|.+|+.++..+..+|++|+.++|...+.
T Consensus        39 ~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~   80 (184)
T d1ygya1          39 GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPA   80 (184)
T ss_dssp             BCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHH
T ss_pred             cccccceeeeeccccchhHHHHHHhhhccceEEeecCCCChh
Confidence            356889999999999999999999999999999999875543

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.37  E-value=0.00075  Score=59.98  Aligned_cols=40  Identities=30%  Similarity=0.452  Sum_probs=36.4

Q ss_pred             ccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHH
Q 012352          376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYD  415 (465)
Q Consensus       376 ~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~  415 (465)
                      +..+.||++.|+|.|.+|+.++..|..+|++|..++|...
T Consensus        44 ~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   83 (193)
T d1mx3a1          44 AARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLS   83 (193)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             ceeeeCceEEEeccccccccceeeeeccccceeeccCccc
Confidence            4568999999999999999999999999999999998644

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.34  E-value=0.0043  Score=52.99  Aligned_cols=68  Identities=12%  Similarity=0.029  Sum_probs=52.2

Q ss_pred             EEEEEccchhHHH-HHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCc--ccchhcccccCCCCeeEEEecCCCCC
Q 012352          383 LFVVIGAGGAGKA-LAYGAKAKGA-RVVIANRTYDRARELAETVGGH--ALSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       383 ~vlV~GaGg~g~a-i~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~--~~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      ++.|+|+|++|+. .+..+...+. +++++++++++++.++++++..  ..+++++-+   .++|+|+-+||..+
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~iD~V~I~tp~~~   74 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQ---YGVDAVMIHAATDV   74 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGG---GCCSEEEECSCGGG
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcc---cccceecccccccc
Confidence            6899999999965 5667776654 8889999999999999998753  234555432   25799999998764

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.32  E-value=0.002  Score=61.54  Aligned_cols=71  Identities=14%  Similarity=0.114  Sum_probs=53.0

Q ss_pred             CcEEEEEccchhHHHHHHHHHH-CCC-eEEEEECCHHHHHHHHHHHCCcccch-hcccccCCCCeeEEEecCCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYDRARELAETVGGHALSL-ADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~-~G~-~v~i~~R~~~~a~~la~~~~~~~~~~-~~l~~~~~~~~DilInaT~~g  452 (465)
                      .+++.|+|+|..|+.-+.++.. +.. +|.|++|++++++++++++....+.. .+..+ ...++|+||.||+..
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~-a~~~aDiV~taT~s~  198 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAE-EASRCDVLVTTTPSR  198 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHH-HHTSSSEEEECCCCS
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhh-hhccccEEEEeccCc
Confidence            4789999999999999888865 456 89999999999999988774321111 11122 345689999999864

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.27  E-value=0.0016  Score=58.86  Aligned_cols=33  Identities=39%  Similarity=0.498  Sum_probs=30.9

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      +|+|+|||+|.+|.++|+.|++.|++|+|+.++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~   33 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAE   33 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCC
Confidence            489999999999999999999999999999864

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.25  E-value=0.0025  Score=53.82  Aligned_cols=38  Identities=21%  Similarity=0.214  Sum_probs=32.9

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRAREL  420 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~l  420 (465)
                      ++-|+|.|.+|++++..|.+.|++|++++|+..+...+
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~   39 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIE   39 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHH
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHH
Confidence            57899999999999999999999999999877655443

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=96.24  E-value=0.0022  Score=56.75  Aligned_cols=40  Identities=23%  Similarity=0.240  Sum_probs=35.9

Q ss_pred             ccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHH
Q 012352          376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYD  415 (465)
Q Consensus       376 ~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~  415 (465)
                      +..+.+|++.|+|.|.+|+.++..+...|++|..+++...
T Consensus        42 ~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   81 (191)
T d1gdha1          42 GEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA   81 (191)
T ss_dssp             BCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             cceecccceEEeecccchHHHHHHHHhhcccccccccccc
Confidence            4568899999999999999999999999999999987644

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.23  E-value=0.0027  Score=55.75  Aligned_cols=39  Identities=26%  Similarity=0.396  Sum_probs=35.6

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRAREL  420 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~l  420 (465)
                      |+|.|+|+|-||++++..++..|++|++++++++..++.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~   43 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQG   43 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhh
Confidence            689999999999999999999999999999998876654

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.19  E-value=0.006  Score=51.34  Aligned_cols=73  Identities=18%  Similarity=0.221  Sum_probs=49.7

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCC--eEEEEECCH--HHHHHHHHHHC----Ccc----cch--hcccccCCCCeeEEEe
Q 012352          383 LFVVIGA-GGAGKALAYGAKAKGA--RVVIANRTY--DRARELAETVG----GHA----LSL--ADLENFNPEDGMILAN  447 (465)
Q Consensus       383 ~vlV~Ga-Gg~g~ai~~~L~~~G~--~v~i~~R~~--~~a~~la~~~~----~~~----~~~--~~l~~~~~~~~DilIn  447 (465)
                      +|.|+|| |.+|.++++.|+..|.  ++.++++++  ++++.++.++.    ...    +.+  .+..+ .+.++|+||-
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~-~l~~aDvVVi   80 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLR-IIDESDVVII   80 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGG-GGTTCSEEEE
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHH-HhccceEEEE
Confidence            5899996 9999999999999994  899999876  34555544442    110    111  11112 3567999999


Q ss_pred             cCCCCCCCC
Q 012352          448 TTSIGMQPK  456 (465)
Q Consensus       448 aT~~gm~~~  456 (465)
                      |++....|.
T Consensus        81 tAG~~~~~g   89 (145)
T d1hyea1          81 TSGVPRKEG   89 (145)
T ss_dssp             CCSCCCCTT
T ss_pred             ecccccCCC
Confidence            988765543

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.19  E-value=0.0033  Score=57.84  Aligned_cols=57  Identities=26%  Similarity=0.367  Sum_probs=44.8

Q ss_pred             EEEeccHHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          348 FGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       348 ~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      +..|-|+..++...+..+..          .-..|+|+|||+|-+|.++|+.|++.|.+|+|+.++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~----------~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1           7 CFQENDYEEFLEIARNGLKA----------TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             GGCCTTHHHHHHHHHHCSCC----------CSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             hcCCccHHHHHHHHhcCCCC----------CCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            34566788877776654431          2245899999999999999999999999999998753

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.18  E-value=0.0019  Score=54.40  Aligned_cols=42  Identities=24%  Similarity=0.204  Sum_probs=36.4

Q ss_pred             cCCcEEEEEc-cchhHHHHHHHHHHCCCeEEEEECCHHHHHHH
Q 012352          379 LAGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYDRAREL  420 (465)
Q Consensus       379 l~~k~vlV~G-aGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~l  420 (465)
                      ..-|++.|+| .|.+|++++..|.+.|++|++++|+.....+.
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~~   49 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAES   49 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHH
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccch
Confidence            3457899999 89999999999999999999999987765544

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.16  E-value=0.0025  Score=55.84  Aligned_cols=47  Identities=23%  Similarity=0.238  Sum_probs=40.9

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVG  425 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~  425 (465)
                      ...-+|+|+|+|-+|..++.....+|++|++++.+.++.+++.+.++
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~   73 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGG   73 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTC
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhc
Confidence            34568999999999999999999999999999999998888766543

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.15  E-value=0.0035  Score=54.82  Aligned_cols=70  Identities=23%  Similarity=0.244  Sum_probs=52.9

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCcc-cchh------cccccCCCCeeEEEecCC
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGHA-LSLA------DLENFNPEDGMILANTTS  450 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~~-~~~~------~l~~~~~~~~DilInaT~  450 (465)
                      +++|||.|+ ||+|..++..++..|+ .|+.+.++.++...++.+++... ++..      .+.+.....+|+++++.+
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG  109 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG  109 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC
Confidence            468999995 8999999999999999 56677888899889998888643 3321      122223356999999986

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.12  E-value=0.0068  Score=52.44  Aligned_cols=70  Identities=20%  Similarity=0.271  Sum_probs=50.6

Q ss_pred             CCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchh------cc-cccCCCCeeEEEecCC
Q 012352          380 AGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLA------DL-ENFNPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~------~l-~~~~~~~~DilInaT~  450 (465)
                      .|.+|||.|++ ++|.+++...+..|++|+.+.|++++. +++++++.. .++..      .+ .......+|+++|+.+
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~-~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG  107 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKI-AYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG  107 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHH-HHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC
Confidence            47899999995 799999999999999999999998875 445566643 23221      11 1113457999999986

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=96.06  E-value=0.0083  Score=56.90  Aligned_cols=71  Identities=18%  Similarity=0.235  Sum_probs=51.4

Q ss_pred             CCcEEEEEccch-hHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC----Ccc-----cchh---cccccCCCCeeEEE
Q 012352          380 AGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRTYDRARELAETVG----GHA-----LSLA---DLENFNPEDGMILA  446 (465)
Q Consensus       380 ~~k~vlV~GaGg-~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~----~~~-----~~~~---~l~~~~~~~~DilI  446 (465)
                      +||+|||+|+.| +|..++..|.+.|++|+.+.|+..+...+.....    ...     .++.   .+.+ .+..+|.++
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-~~~~~~~v~   88 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDE-VIKGAAGVA   88 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTT-TTTTCSEEE
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhh-hcccchhhh
Confidence            589999999965 9999999999999999999999888776654332    110     1221   2223 456789998


Q ss_pred             ecCCC
Q 012352          447 NTTSI  451 (465)
Q Consensus       447 naT~~  451 (465)
                      +++..
T Consensus        89 ~~a~~   93 (342)
T d1y1pa1          89 HIASV   93 (342)
T ss_dssp             ECCCC
T ss_pred             hhccc
Confidence            88764

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.03  E-value=0.0092  Score=50.48  Aligned_cols=47  Identities=30%  Similarity=0.455  Sum_probs=40.6

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH  427 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~  427 (465)
                      .+.+|+|.|+|++|..++..++..|++|+++.+++++.+ ++++++..
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~-~~k~~Ga~   73 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLE-LAKELGAD   73 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHH-HHHHTTCS
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhh-hhhhcCcc
Confidence            467999999999999999999999999999999999865 56778754

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=96.02  E-value=0.00065  Score=60.68  Aligned_cols=40  Identities=23%  Similarity=0.208  Sum_probs=36.2

Q ss_pred             ccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHH
Q 012352          376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYD  415 (465)
Q Consensus       376 ~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~  415 (465)
                      +..+.+|++.|+|.|.+|+.++..|..+|++|+.++|...
T Consensus        40 ~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   79 (199)
T d1dxya1          40 GKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPM   79 (199)
T ss_dssp             CCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cccccceeeeeeecccccccccccccccceeeeccCCccc
Confidence            3568899999999999999999999999999999998644

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=96.01  E-value=0.0047  Score=59.40  Aligned_cols=70  Identities=13%  Similarity=0.121  Sum_probs=54.1

Q ss_pred             CcEEEEEccchhHHHHHHHHH-HCCC-eEEEEECCHHHHHHHHHHHCCc----ccchhcccccCCCCeeEEEecCCC
Q 012352          381 GKLFVVIGAGGAGKALAYGAK-AKGA-RVVIANRTYDRARELAETVGGH----ALSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~-~~G~-~v~i~~R~~~~a~~la~~~~~~----~~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      .+++.|+|+|..|+.-+.++. -++. +|.|++|++++++++++++...    ....+++.+ ....+|+|+.+|+.
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~e-av~~ADIi~t~Tas  203 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAE-AVKGVDIITTVTAD  203 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHH-HHTTCSEEEECCCC
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHH-HHhcCCceeecccc
Confidence            479999999999998888774 5677 9999999999999999988532    112233444 45678999998864

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=95.91  E-value=0.0032  Score=55.32  Aligned_cols=38  Identities=16%  Similarity=0.107  Sum_probs=34.9

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      ..+.++++.|+|.|.+|++++..|...|.+|..++|..
T Consensus        40 ~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d2naca1          40 YDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHR   77 (188)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             eeccccceeeccccccchhhhhhhhccCceEEEEeecc
Confidence            46889999999999999999999999999999999853

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.89  E-value=0.0074  Score=50.67  Aligned_cols=70  Identities=17%  Similarity=0.233  Sum_probs=49.4

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCC--cc------cchhcccccCCCCeeEEEecCCC
Q 012352          383 LFVVIGA-GGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGG--HA------LSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       383 ~vlV~Ga-Gg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~--~~------~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      ++.|+|| |.+|.++++.|+..|.  ++.+++.+..+++.+  ++..  ..      +...+..+ .+..+|+||-+++.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~--Dl~~~~~~~~~~~~~~~~~~~~-~~~~aDivVitag~   78 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAA--DLSHIETRATVKGYLGPEQLPD-CLKGCDVVVIPAGV   78 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHH--HHTTSSSSCEEEEEESGGGHHH-HHTTCSEEEECCSC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhH--HHhhhhhhcCCCeEEcCCChHH-HhCCCCEEEECCCc
Confidence            6899996 9999999999999985  899999987665554  3321  11      11122223 35679999999887


Q ss_pred             CCCC
Q 012352          452 GMQP  455 (465)
Q Consensus       452 gm~~  455 (465)
                      ...|
T Consensus        79 ~~~~   82 (144)
T d1mlda1          79 PRKP   82 (144)
T ss_dssp             CCCT
T ss_pred             CCCC
Confidence            6544

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.87  E-value=0.004  Score=55.55  Aligned_cols=33  Identities=36%  Similarity=0.356  Sum_probs=31.0

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      .|+|+|||+|-+|.++|+.|+++|.+|+|+.|+
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            478999999999999999999999999999984

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.80  E-value=0.0034  Score=54.19  Aligned_cols=35  Identities=20%  Similarity=0.153  Sum_probs=31.8

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHH
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYD  415 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~  415 (465)
                      +|+|+|+|+|.+|..+|..|+++|+ .|+|+.|...
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            5899999999999999999999999 6999988643

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=95.78  E-value=0.011  Score=50.73  Aligned_cols=70  Identities=20%  Similarity=0.263  Sum_probs=51.2

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc-cchhcc-----cccCCCCeeEEEecCC
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA-LSLADL-----ENFNPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~-~~~~~l-----~~~~~~~~DilInaT~  450 (465)
                      .+.+|||.|+ ||.|.+++.-.+..|++|+...|+.+|.+.+ .+++... ++.++.     .....+.+|++|++.+
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~-~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vg   99 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYL-KQLGASEVISREDVYDGTLKALSKQQWQGAVDPVG   99 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHH-HHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHH-HhhcccceEeccchhchhhhcccCCCceEEEecCc
Confidence            4557999996 7999999999999999999999998886554 5666543 333321     1112356999999876

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.77  E-value=0.011  Score=49.97  Aligned_cols=43  Identities=26%  Similarity=0.359  Sum_probs=37.6

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG  426 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~  426 (465)
                      ++-++|.|-||.+++..|.+.|. ++++||+.++++++.+..+.
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~-~~~~~~~~~~~~~~~~~~~~   44 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFP-TLVWNRTFEKALRHQEEFGS   44 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSC-EEEECSSTHHHHHHHHHHCC
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCC-EEEEeCCHHHHHHHHHHcCC
Confidence            58899999999999999998775 55899999999999888764

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.73  E-value=0.0037  Score=52.62  Aligned_cols=39  Identities=21%  Similarity=0.424  Sum_probs=35.0

Q ss_pred             cccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          375 VSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       375 ~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      -...+++|+|||+|+|.+|..-+..|.+.|++|+|++.+
T Consensus         7 l~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1           7 LAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             EEECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             hheeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            346789999999999999999999999999999999653

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.72  E-value=0.0077  Score=51.82  Aligned_cols=70  Identities=20%  Similarity=0.243  Sum_probs=51.3

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc-cchh------ccccc-CCCCeeEEEecCC
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA-LSLA------DLENF-NPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~-~~~~------~l~~~-~~~~~DilInaT~  450 (465)
                      .+++|||.|+ |++|..++..+...|++++++.++.++. +++.+++... ++..      ++.+. ...++|+++++++
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~-~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g  103 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKR-EMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLA  103 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHH-HHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCC
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeecccccc-cccccccccccccCCccCHHHHHHHHhCCCCEEEEEeccc
Confidence            3679999986 8999999999999999999998988885 4566676532 2221      12221 2356999999987

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.014  Score=50.02  Aligned_cols=71  Identities=20%  Similarity=0.242  Sum_probs=51.5

Q ss_pred             CCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchh------ccccc-CCCCeeEEEecCC
Q 012352          380 AGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLA------DLENF-NPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~------~l~~~-~~~~~DilInaT~  450 (465)
                      .+++|+|.|+| ++|.+++..++..|++|+++.+++++.+ ++.+++.. .++..      ++.+. ....+|+++++.+
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~-~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~g  106 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQ-SALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVG  106 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHH-HHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSC
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHH-HHHhcCCeEEEECCCCCHHHHHHHHhCCCCeEEEEeCcc
Confidence            36899999775 6999999999999999999999999864 45677754 33321      12211 2356899999886


Q ss_pred             C
Q 012352          451 I  451 (465)
Q Consensus       451 ~  451 (465)
                      .
T Consensus       107 ~  107 (179)
T d1qora2         107 R  107 (179)
T ss_dssp             G
T ss_pred             H
Confidence            3

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.003  Score=56.88  Aligned_cols=74  Identities=18%  Similarity=0.249  Sum_probs=49.0

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCC--eEEEEECCHHHHHHHH-HHHCCcccchhccccc--CCCCeeEEEecCCCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGA--RVVIANRTYDRARELA-ETVGGHALSLADLENF--NPEDGMILANTTSIG  452 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la-~~~~~~~~~~~~l~~~--~~~~~DilInaT~~g  452 (465)
                      +++|+|||+|+ |-+|+.++..|.+.|.  +|++++|++.+...-. ..+.....+++++.++  .+.++|++|++++..
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~~   91 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   91 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeeccccccccccccccccccccccccc
Confidence            56789999998 7899999999999885  8999999754321110 0000011234333221  456799999998754

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.016  Score=50.04  Aligned_cols=57  Identities=19%  Similarity=0.214  Sum_probs=45.4

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEEECCHHHHHHHH
Q 012352          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRTYDRARELA  421 (465)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg-~g~ai~~~L~~~G~~v~i~~R~~~~a~~la  421 (465)
                      -.|++..|++.           +.++.||+|+|+|.|. .|+-++..|.+.|+.|+++++......+..
T Consensus        23 p~aii~lL~~~-----------~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~~~~   80 (170)
T d1a4ia1          23 PKGCLELIKET-----------GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEV   80 (170)
T ss_dssp             HHHHHHHHHTT-----------TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHH
T ss_pred             HHHHHHHHHHh-----------CcccccceEEEEecCCccchHHHHHHHhccCceEEEecccccHHHHH
Confidence            35667767663           3678999999999984 999999999999999999988665544443

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.56  E-value=0.01  Score=51.51  Aligned_cols=72  Identities=15%  Similarity=0.185  Sum_probs=51.5

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcc-cchhcc-----cccCCCCeeEEEecCCC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA-LSLADL-----ENFNPEDGMILANTTSI  451 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~-~~~~~l-----~~~~~~~~DilInaT~~  451 (465)
                      ..+.+|||.|+ ||.|.+++.-++..|++|+.+.+++++. +++.+++... ++.++.     .....+++|+||++.+-
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~-~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vgg  108 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEH-DYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGG  108 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCH-HHHHHTTCSEEEECC---------CCSCCEEEEEECSTT
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHH-HHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCCc
Confidence            34788999996 7999999999999999999999988884 4556677542 322211     11123579999998763

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.013  Score=48.98  Aligned_cols=70  Identities=10%  Similarity=0.060  Sum_probs=52.0

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC---Cccc-----chhcccccCCCCeeEEEecCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVG---GHAL-----SLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~---~~~~-----~~~~l~~~~~~~~DilInaT~~  451 (465)
                      .+++|+|.|..|+.++..|.+.|.+++++..++++.....++..   ...+     +.+.+.+..+.++|.+|-+|+-
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~   81 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN   81 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEcccc
Confidence            37999999999999999999999999999999888776665542   1111     2222333356788999988763

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.018  Score=49.90  Aligned_cols=70  Identities=19%  Similarity=0.207  Sum_probs=49.4

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCc-ccchhccc--c-cCCCCeeEEEecCC
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH-ALSLADLE--N-FNPEDGMILANTTS  450 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~-~~~~~~l~--~-~~~~~~DilInaT~  450 (465)
                      .+.++||.|+ ||.|.+++.-.+..|++|+.+.|++++.+ .+++++.. .++.++..  + ......|.+|++.+
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~-~~~~lGad~vi~~~~~~~~~~l~~~~~~~vvD~Vg  105 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHE-YLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVG  105 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHH-HHHHHTEEEEEEGGGSSSCCSSCCCCEEEEEESSC
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHH-HHHhhccccccccccHHHHHHHHhhcCCeeEEEcc
Confidence            3457888877 79999999999999999999999999865 44677753 33433221  1 11234688888764

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.45  E-value=0.0032  Score=55.37  Aligned_cols=40  Identities=28%  Similarity=0.272  Sum_probs=36.0

Q ss_pred             ccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHH
Q 012352          376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYD  415 (465)
Q Consensus       376 ~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~  415 (465)
                      +..+.++++.|+|.|.+|+.++..+...|++|+.++|...
T Consensus        39 ~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d1sc6a1          39 SFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENK   78 (188)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cccccceEEEEeecccchhhhhhhcccccceEeecccccc
Confidence            3568899999999999999999999999999999998643

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.33  E-value=0.024  Score=47.27  Aligned_cols=72  Identities=21%  Similarity=0.262  Sum_probs=48.2

Q ss_pred             EEEEEc-cchhHHHHHHHHHHCCC--eEEEEECC--HHHHHHHHHHHC----C--c-ccchhcccccCCCCeeEEEecCC
Q 012352          383 LFVVIG-AGGAGKALAYGAKAKGA--RVVIANRT--YDRARELAETVG----G--H-ALSLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       383 ~vlV~G-aGg~g~ai~~~L~~~G~--~v~i~~R~--~~~a~~la~~~~----~--~-~~~~~~l~~~~~~~~DilInaT~  450 (465)
                      ++.|+| +|.+|.++++.|...+.  ++.+++.+  .++++..+-++.    .  . .+...+. + .+.++|+||.+++
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~-~-~~~~aDiVvitaG   79 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY-E-DTAGSDVVVITAG   79 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG-G-GGTTCSEEEECCC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH-H-HhhhcCEEEEecc
Confidence            789999 69999999999999985  79999853  455554443332    1  1 0111111 2 3467999999988


Q ss_pred             CCCCCC
Q 012352          451 IGMQPK  456 (465)
Q Consensus       451 ~gm~~~  456 (465)
                      ....|.
T Consensus        80 ~~~~~g   85 (142)
T d1o6za1          80 IPRQPG   85 (142)
T ss_dssp             CCCCTT
T ss_pred             cccccC
Confidence            765543

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=95.17  E-value=0.024  Score=48.51  Aligned_cols=57  Identities=23%  Similarity=0.299  Sum_probs=45.2

Q ss_pred             HHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Q 012352          355 VGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRTYDRARELAE  422 (465)
Q Consensus       355 ~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg-~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~  422 (465)
                      .|++.-|++.           +.++.||+++|+|-|. .|+-++..|.+.|+.|+++.+.....++...
T Consensus        22 ~aI~~lL~~y-----------~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~~~~~   79 (166)
T d1b0aa1          22 RGIVTLLERY-----------NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVE   79 (166)
T ss_dssp             HHHHHHHHHT-----------TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHHHH
T ss_pred             HHHHHHHHHc-----------CcccccceEEEEeccccccHHHHHHHHHhhccccccccccchhHHHHh
Confidence            5677777763           2678999999999995 9999999999999999999876555444443

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.15  E-value=0.017  Score=49.75  Aligned_cols=69  Identities=14%  Similarity=0.151  Sum_probs=52.3

Q ss_pred             EEEEEccchhHHHHHHHHHHC-CCeEE-EEECCHHHHHHHHHHHCCc----c-cchhcccccCCCCeeEEEecCCCCC
Q 012352          383 LFVVIGAGGAGKALAYGAKAK-GARVV-IANRTYDRARELAETVGGH----A-LSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~-G~~v~-i~~R~~~~a~~la~~~~~~----~-~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      ++.|+|+|.+|+..+..+... +++|+ |++++++++++++++++..    . -+++++-+  -.+.|+|+-+||...
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--~~~iD~v~I~tp~~~   78 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLE--DPEIDALYVPLPTSL   78 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHH--CTTCCEEEECCCGGG
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhh--ccccceeeecccchh
Confidence            688999999999999888876 45655 8899999999999988632    1 24444322  246899999998763

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.13  E-value=0.007  Score=50.93  Aligned_cols=35  Identities=20%  Similarity=0.147  Sum_probs=32.2

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRA  417 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a  417 (465)
                      +|+|+|+|.+|..++..|++.|.+|++++|+.++.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~   36 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPY   36 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSE
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHh
Confidence            68999999999999999999999999999987643

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.02  E-value=0.0085  Score=53.81  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=31.4

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      .++|+|+|+|.+|.++|..|++.|++|+|+.|++
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4789999999999999999999999999999853

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.0089  Score=56.02  Aligned_cols=70  Identities=17%  Similarity=0.203  Sum_probs=44.0

Q ss_pred             cEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCH-HHHHHHHHHHCCcccch---hcccccCCCCeeEEEecCCCC
Q 012352          382 KLFVVIGAG-GAGKALAYGAKAKGARVVIANRTY-DRARELAETVGGHALSL---ADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       382 k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~-~~a~~la~~~~~~~~~~---~~l~~~~~~~~DilInaT~~g  452 (465)
                      |+|||+|+. -+|+.++..|.+.|++|+.++|.. .+.+.+-.......+++   +.+.. ...++|+||+++...
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~d~VihlAa~~   76 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP-LYIEVDQIYHLASPA   76 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSC-CCCCCSEEEECCSCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHH-HHcCCCEEEECcccC
Confidence            789999995 599999999999999999987632 11111111011111122   11222 345799999998754

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.01  E-value=0.026  Score=43.79  Aligned_cols=71  Identities=20%  Similarity=0.193  Sum_probs=48.2

Q ss_pred             CCcEEEEEccchhHHHH-HHHHHHCCCeEEEEECCH-HHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCCC
Q 012352          380 AGKLFVVIGAGGAGKAL-AYGAKAKGARVVIANRTY-DRARELAETVGGHALSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai-~~~L~~~G~~v~i~~R~~-~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      +.|++.++|-||+|.+. |..|+++|++|+-.++.. ...+.+.+ .+..... ..-.+ .+.+.|+||-++++..
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~-~Gi~v~~-g~~~~-~i~~~d~vV~S~AI~~   79 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQ-AGAKIYI-GHAEE-HIEGASVVVVSSAIKD   79 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHH-TTCEEEE-SCCGG-GGTTCSEEEECTTSCT
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHH-CCCeEEE-CCccc-cCCCCCEEEECCCcCC
Confidence            46899999999999755 888999999999999864 34444543 4543211 11112 3456799988877653

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=94.84  E-value=0.026  Score=47.92  Aligned_cols=70  Identities=16%  Similarity=0.108  Sum_probs=46.4

Q ss_pred             EEEEEccchhHHHH-HHHHHHCCC-e-EEEEECCHH-HHHHHHHHHCCccc--chhcccc-cCCCCeeEEEecCCCC
Q 012352          383 LFVVIGAGGAGKAL-AYGAKAKGA-R-VVIANRTYD-RARELAETVGGHAL--SLADLEN-FNPEDGMILANTTSIG  452 (465)
Q Consensus       383 ~vlV~GaGg~g~ai-~~~L~~~G~-~-v~i~~R~~~-~a~~la~~~~~~~~--~~~~l~~-~~~~~~DilInaT~~g  452 (465)
                      ++.|+|+|++|+.. ...|..... + +.+++|+.+ +..+.+++++....  .++++.+ ....+.|+++.|||.|
T Consensus         6 rvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag   82 (157)
T d1nvmb1           6 KVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSAS   82 (157)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHH
T ss_pred             EEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCch
Confidence            79999999999864 556665554 5 456688865 55677888775321  2333221 1234689999999976

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=94.83  E-value=0.035  Score=47.70  Aligned_cols=69  Identities=22%  Similarity=0.214  Sum_probs=51.5

Q ss_pred             EEEEEccchhHHH-HHHHHHHCC--CeEE-EEECCHHHHHHHHHHHCCcc--cchhcccccCCCCeeEEEecCCCCC
Q 012352          383 LFVVIGAGGAGKA-LAYGAKAKG--ARVV-IANRTYDRARELAETVGGHA--LSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       383 ~vlV~GaGg~g~a-i~~~L~~~G--~~v~-i~~R~~~~a~~la~~~~~~~--~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      ++.|+|+|.+|+. .+.++.+.+  ++|+ |++|+.++++.+++.++...  -+++++-+  -.+.|+|+-+||...
T Consensus         5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~--~~~id~v~I~tp~~~   79 (181)
T d1zh8a1           5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLE--SGLVDAVDLTLPVEL   79 (181)
T ss_dssp             EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHH--SSCCSEEEECCCGGG
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeecccc--ccccceeeccccccc
Confidence            7899999999986 477787654  3544 88999999999999997532  35555422  246899999998753

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.82  E-value=0.014  Score=46.58  Aligned_cols=34  Identities=32%  Similarity=0.346  Sum_probs=31.5

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      .|+++|+|+|-+|-.+|..|+++|.+|+++.|..
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~   55 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAG   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecc
Confidence            4799999999999999999999999999998864

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=94.81  E-value=0.018  Score=42.94  Aligned_cols=45  Identities=24%  Similarity=0.284  Sum_probs=36.8

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHC
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG  425 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~  425 (465)
                      ++.+++|.|+ ||+|..++..++..|++|+.+.+++++.+- ++++|
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~-~~~lG   76 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEY-LKSLG   76 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHH-HHHHT
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHH-HHHCC
Confidence            4678999987 799999999999999999999999887544 34443

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.76  E-value=0.016  Score=46.83  Aligned_cols=35  Identities=26%  Similarity=0.242  Sum_probs=31.9

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      +.|+++|+|+|.+|..+|..|+++|.+|+++.|..
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence            46899999999999999999999999999997753

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

Probab=94.72  E-value=0.2  Score=44.30  Aligned_cols=144  Identities=21%  Similarity=0.231  Sum_probs=95.2

Q ss_pred             cCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 012352           32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG  111 (465)
Q Consensus        32 ~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~~l~~~~~~~  111 (465)
                      ..|.+++.+-++++.+.+...|=++-.+.+      ..+..+...+. -+.|+=..+.|..   +.+.+..-.+.+++.|
T Consensus        14 ~~T~~~i~~lc~~A~~~~~~aVcV~P~~v~------~a~~~l~~s~v-~v~~VigFP~G~~---~~~~k~~e~~~ai~~G   83 (211)
T d1ub3a_          14 TATLEEVAKAAEEALEYGFYGLCIPPSYVA------WVRARYPHAPF-RLVTVVGFPLGYQ---EKEVKALEAALACARG   83 (211)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEECCGGGHH------HHHHHCTTCSS-EEEEEESTTTCCS---CHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHhCCeEEEECHHHHH------HHHHHccCCCC-ceEEEEecccccC---cHHHHHHHHHHHHHcC
Confidence            346788888888877777665543322211      23333333333 4556667777775   5567777788999999


Q ss_pred             CcEEEEeeccc-------cch---hHHHHh-cCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEEe----ec
Q 012352          112 ADYIDVELQVA-------REF---NDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFAT----TA  176 (465)
Q Consensus       112 ~~~iDiEl~~~-------~~~---~~~l~~-~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKia~----~~  176 (465)
                      ++-||+=++..       +.+   ++.+.. .+....|+|+-.+..    +.+++.+..+-+.+.|||.+|--+    ..
T Consensus        84 A~EiD~V~n~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L----~~~ei~~a~~~a~~aGadfiKTSTG~~~~g  159 (211)
T d1ub3a_          84 ADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYF----SPEEIARLAEAAIRGGADFLKTSTGFGPRG  159 (211)
T ss_dssp             CSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGS----CHHHHHHHHHHHHHHTCSEEECCCSSSSCC
T ss_pred             CCeEEEeeccchhhcCCHHHHHHHHHHHHHhccCCceEEEeccccC----CHHHHHHHHHHHHHhccceEEecCCCCCCC
Confidence            99999976542       112   222332 233456899987765    467899999999999999999865    34


Q ss_pred             CCHHHHHHHHHHh
Q 012352          177 LDITDVARVFQIT  189 (465)
Q Consensus       177 ~~~~D~~~ll~~~  189 (465)
                      .+++|+..+.+..
T Consensus       160 at~e~v~~m~~~~  172 (211)
T d1ub3a_         160 ASLEDVALLVRVA  172 (211)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHh
Confidence            5899997777654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.68  E-value=0.014  Score=46.66  Aligned_cols=34  Identities=24%  Similarity=0.196  Sum_probs=31.3

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      .|+++|+|+|-+|..+|..|+++|.+|+++.|.+
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence            4789999999999999999999999999999853

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.68  E-value=0.014  Score=47.20  Aligned_cols=34  Identities=21%  Similarity=0.259  Sum_probs=31.5

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      .|+++|+|+|-+|..+|..|+++|++|+++.|.+
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence            4799999999999999999999999999998854

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.64  E-value=0.018  Score=46.51  Aligned_cols=34  Identities=24%  Similarity=0.389  Sum_probs=31.6

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      +++++|+|+|-+|-.+|..|+++|.+|+++.|.+
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecc
Confidence            5899999999999999999999999999998754

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.59  E-value=0.0084  Score=54.51  Aligned_cols=34  Identities=21%  Similarity=0.354  Sum_probs=31.3

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEEC
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANR  412 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R  412 (465)
                      +++++|+|+|+||.|..++..|+..|. ++++++.
T Consensus        28 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~   62 (247)
T d1jw9b_          28 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDF   62 (247)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            567899999999999999999999999 9999873

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.58  E-value=0.015  Score=54.73  Aligned_cols=34  Identities=26%  Similarity=0.423  Sum_probs=31.5

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      .|+|+|||||-+|.++|+.|++.|.+|+|+.++.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence            5899999999999999999999999999998763

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.46  E-value=0.014  Score=52.16  Aligned_cols=36  Identities=19%  Similarity=0.254  Sum_probs=32.9

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      -.+|+|+|+|+|.+|.++|..|+++|++|+|+.++.
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeecc
Confidence            457899999999999999999999999999998754

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.018  Score=52.14  Aligned_cols=33  Identities=24%  Similarity=0.327  Sum_probs=30.2

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      .++|+|||+|-+|.++|+.|++.|++|+|+-++
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~   37 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEAR   37 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCC
Confidence            467999999999999999999999999999654

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.43  E-value=0.018  Score=46.21  Aligned_cols=33  Identities=24%  Similarity=0.207  Sum_probs=31.0

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      .|+++|+|+|-+|-.+|..|++.|.+|+++.|.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~   54 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARG   54 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehh
Confidence            479999999999999999999999999999984

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.38  E-value=0.016  Score=48.48  Aligned_cols=34  Identities=26%  Similarity=0.372  Sum_probs=30.8

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC--eEEEEECCH
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTY  414 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~  414 (465)
                      ||+|+|+|+|-+|..++..|.+++.  +|+++.+++
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            7999999999999999999999884  899998765

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=94.37  E-value=0.029  Score=48.14  Aligned_cols=72  Identities=13%  Similarity=0.101  Sum_probs=44.2

Q ss_pred             CcEEEEEccchhH--HHHHHHHHHC---CC-eEEEEECCHHHHHHHHHHHC-------Cc--ccchhcccccCCCCeeEE
Q 012352          381 GKLFVVIGAGGAG--KALAYGAKAK---GA-RVVIANRTYDRARELAETVG-------GH--ALSLADLENFNPEDGMIL  445 (465)
Q Consensus       381 ~k~vlV~GaGg~g--~ai~~~L~~~---G~-~v~i~~R~~~~a~~la~~~~-------~~--~~~~~~l~~~~~~~~Dil  445 (465)
                      ..++.|+|+|..+  ..+...+...   .. +|++++.++++++..+..+.       ..  .....+..+ .+..+|+|
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~e-al~~AD~V   81 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEE-AFTDVDFV   81 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHH-HHSSCSEE
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhh-ccCCCCEE
Confidence            3579999999543  3444444322   22 89999999999875444331       11  111122233 35679999


Q ss_pred             EecCCCCC
Q 012352          446 ANTTSIGM  453 (465)
Q Consensus       446 InaT~~gm  453 (465)
                      |++++.+-
T Consensus        82 vitag~~~   89 (167)
T d1u8xx1          82 MAHIRVGK   89 (167)
T ss_dssp             EECCCTTH
T ss_pred             EECCCcCC
Confidence            99998763

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.31  E-value=0.074  Score=40.55  Aligned_cols=69  Identities=17%  Similarity=0.196  Sum_probs=46.4

Q ss_pred             cEEEEEccchhHHH-HHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          382 KLFVVIGAGGAGKA-LAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       382 k~vlV~GaGg~g~a-i~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      .++-++|-||+|.+ +|..|.++|++|+-.++.....-+-.+..+.... ...-.+ .+.++|+||-++.+.
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~-~gh~~~-~i~~~d~vV~SsAI~   71 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIF-VPHSAD-NWYDPDLVIKTPAVR   71 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEE-SSCCTT-SCCCCSEEEECTTCC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEE-eeeccc-ccCCCCEEEEecCcC
Confidence            46889999999984 5778899999999999876433333344453321 111112 345789999887775

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.26  E-value=0.031  Score=48.18  Aligned_cols=69  Identities=23%  Similarity=0.263  Sum_probs=51.2

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCC
Q 012352          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       378 ~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~  450 (465)
                      .+++|+|.|+|-|--|+|=+..|.+.|.+|+|-.|...+..+.|+.-+....++++..    .++|+|..-+|
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~~~~eA~----~~aDiim~L~P   81 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAV----AAADVVMILTP   81 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHH----HTCSEEEECSC
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccccHHHHh----hhcCeeeeecc
Confidence            3678999999999999999999999999999999987777777776555444433221    23455555444

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.24  E-value=0.02  Score=46.36  Aligned_cols=33  Identities=24%  Similarity=0.209  Sum_probs=31.1

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      .|+++|+|+|-+|..++..|+++|.+|+++.|.
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~   54 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRH   54 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeec
Confidence            479999999999999999999999999999985

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.21  E-value=0.02  Score=46.09  Aligned_cols=34  Identities=26%  Similarity=0.283  Sum_probs=31.4

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      .|+++|+|+|.+|-.+|..|+++|.+|+++.|.+
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEeccc
Confidence            4789999999999999999999999999998864

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.19  E-value=0.017  Score=50.12  Aligned_cols=31  Identities=29%  Similarity=0.405  Sum_probs=28.9

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC-eEEEEECC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~  413 (465)
                      +|+|||+|-+|.++|+.|++.|. +|+|+.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~   33 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEAT   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECC
Confidence            59999999999999999999998 69999875

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.08  E-value=0.029  Score=44.97  Aligned_cols=33  Identities=30%  Similarity=0.247  Sum_probs=30.8

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      .++++|+|+|-+|..+|..|+++|++|+++.|.
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~   54 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAM   54 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEee
Confidence            478999999999999999999999999999874

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=94.00  E-value=0.018  Score=54.81  Aligned_cols=32  Identities=31%  Similarity=0.294  Sum_probs=28.7

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEECC
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      |.|||+|+ |-+|+.++..|.+.|.+|+.++|.
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~   34 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRR   34 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC-
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            78999997 559999999999999999999984

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=93.97  E-value=0.018  Score=51.47  Aligned_cols=31  Identities=26%  Similarity=0.442  Sum_probs=29.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      +|+|||+|-+|.++|+.|++.|++|+|+.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~   32 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESS   32 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecC
Confidence            5899999999999999999999999999874

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=93.96  E-value=0.046  Score=48.73  Aligned_cols=69  Identities=10%  Similarity=0.131  Sum_probs=50.1

Q ss_pred             EEEEEccchhHHH-HHHHHHHC-CCeEE-EEECCHHHHHHHHHHHCCcc------cchhcccccCCCCeeEEEecCCCCC
Q 012352          383 LFVVIGAGGAGKA-LAYGAKAK-GARVV-IANRTYDRARELAETVGGHA------LSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       383 ~vlV~GaGg~g~a-i~~~L~~~-G~~v~-i~~R~~~~a~~la~~~~~~~------~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      ++.|+|+|.+|+. .+..+... +++|+ |++|++++++.++++++...      -+++++-+  -.+.|+|+-+||...
T Consensus        35 riaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~--~~~iD~V~I~tp~~~  112 (221)
T d1h6da1          35 GYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAK--DPKIDAVYIILPNSL  112 (221)
T ss_dssp             EEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGG--CTTCCEEEECSCGGG
T ss_pred             EEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcc--cccceeeeeccchhh
Confidence            7999999999975 55666554 45644 89999999999999987431      23444322  246899999998653

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.95  E-value=0.023  Score=45.23  Aligned_cols=33  Identities=27%  Similarity=0.423  Sum_probs=30.9

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      .|+++|+|+|-+|-.+|..|+++|++|+++.|.
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~   53 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEAR   53 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeee
Confidence            479999999999999999999999999999874

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=93.85  E-value=0.043  Score=47.03  Aligned_cols=70  Identities=20%  Similarity=0.204  Sum_probs=44.6

Q ss_pred             EEEEEccchhH--HHHHHHHHHC----CCeEEEEECCHHHHHHHHHHHC-------Cc--ccchhcccccCCCCeeEEEe
Q 012352          383 LFVVIGAGGAG--KALAYGAKAK----GARVVIANRTYDRARELAETVG-------GH--ALSLADLENFNPEDGMILAN  447 (465)
Q Consensus       383 ~vlV~GaGg~g--~ai~~~L~~~----G~~v~i~~R~~~~a~~la~~~~-------~~--~~~~~~l~~~~~~~~DilIn  447 (465)
                      ++.|+|+|.+|  .++...+...    +.+|+++++++++++..+..+.       ..  .....+..+ .+..+|+||+
T Consensus         4 KI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~e-aL~dad~Vv~   82 (171)
T d1obba1           4 KIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDD-VIIDADFVIN   82 (171)
T ss_dssp             EEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHH-HHTTCSEEEE
T ss_pred             EEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhh-cccCCCeEee
Confidence            78999999555  4455555432    2389999999999876543321       11  111123333 4567999999


Q ss_pred             cCCCCC
Q 012352          448 TTSIGM  453 (465)
Q Consensus       448 aT~~gm  453 (465)
                      +...|-
T Consensus        83 ~~~~g~   88 (171)
T d1obba1          83 TAMVGG   88 (171)
T ss_dssp             CCCTTH
T ss_pred             eccccc
Confidence            987763

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.76  E-value=0.031  Score=45.83  Aligned_cols=34  Identities=29%  Similarity=0.350  Sum_probs=31.5

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      .+|+++|+|+|-+|-.+|..|++.|.+|+++.|.
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~   67 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTA   67 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeec
Confidence            3689999999999999999999999999999875

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.75  E-value=0.029  Score=45.32  Aligned_cols=33  Identities=21%  Similarity=0.089  Sum_probs=30.8

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      .++++|+|+|-+|..+|..|.++|.+|+|+.|+
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            468999999999999999999999999999886

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=93.71  E-value=0.029  Score=52.74  Aligned_cols=42  Identities=26%  Similarity=0.134  Sum_probs=35.6

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEECCHHHHHHH
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRAREL  420 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~~~~a~~l  420 (465)
                      +++|+|||+|+. -+|+.++..|.+.|++|++++|+..+...+
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~   48 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSL   48 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCH
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHH
Confidence            578999999985 599999999999999999999976544443

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=93.67  E-value=0.022  Score=53.80  Aligned_cols=38  Identities=29%  Similarity=0.315  Sum_probs=33.5

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHH
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRA  417 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a  417 (465)
                      +.|+|+|+|+ |.+|++++..|.+.|++|+++.|+..+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~   40 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL   40 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchh
Confidence            3689999997 7899999999999999999999986644

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=93.63  E-value=0.048  Score=45.90  Aligned_cols=67  Identities=18%  Similarity=0.027  Sum_probs=49.9

Q ss_pred             EEEEEccchhHHH-HHHHHHHC-CCe-EEEEECCHHHHHHHHHHHCCccc-chhcccccCCCCeeEEEecCCCCC
Q 012352          383 LFVVIGAGGAGKA-LAYGAKAK-GAR-VVIANRTYDRARELAETVGGHAL-SLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       383 ~vlV~GaGg~g~a-i~~~L~~~-G~~-v~i~~R~~~~a~~la~~~~~~~~-~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      ++.|+|+|.+|+- .+..+... +++ +.|++|+.++++++++.++.... .++++.    .+.|+|+-+||..+
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~----~~~D~V~I~tp~~~   73 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLA----ASCDAVFVHSSTAS   73 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHH----TTCSEEEECSCTTH
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhh----hhcccccccccchh
Confidence            6889999999975 56667665 455 56889999999999999876543 233332    35799999998763

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.59  E-value=0.026  Score=48.68  Aligned_cols=32  Identities=19%  Similarity=0.213  Sum_probs=29.8

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      .|+|||+|-.|..+|+.|++.|.+|+|+.++.
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            48999999999999999999999999999864

>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.56  E-value=0.64  Score=41.91  Aligned_cols=143  Identities=20%  Similarity=0.126  Sum_probs=93.9

Q ss_pred             cCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 012352           32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG  111 (465)
Q Consensus        32 ~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~~l~~~~~~~  111 (465)
                      ..|.+++.+-++++.+.++..|=++--+.+      ..+..++..+.. +.|+=..+.|-.   +.+.+..-.+.+++.|
T Consensus        47 ~~t~e~i~~lc~~A~~~~~aaVcV~P~~v~------~a~~~L~gs~v~-v~tVigFP~G~~---~~~~K~~Ea~~Ai~~G  116 (251)
T d1o0ya_          47 FATPDDIKKLCLEARENRFHGVCVNPCYVK------LAREELEGTDVK-VVTVVGFPLGAN---ETRTKAHEAIFAVESG  116 (251)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEEECGGGHH------HHHHHHTTSCCE-EEEEESTTTCCS---CHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHhhcCceEEEECHHHHH------HHHHHhcCCCce-EEeeccCCCCCC---cHHHHHHHHHHHHHcC
Confidence            445788888888877777666544333222      334444445555 456556666554   5577877788999999


Q ss_pred             CcEEEEeeccc-------cch---hHHHHh-cCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEEe----ec
Q 012352          112 ADYIDVELQVA-------REF---NDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFAT----TA  176 (465)
Q Consensus       112 ~~~iDiEl~~~-------~~~---~~~l~~-~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKia~----~~  176 (465)
                      ++-||+=++..       +.+   ++.+.. .+..-.|+|+-....    +.+++.+..+-+.+.|||.+|-.+    ..
T Consensus       117 AdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L----~~~e~~~a~~ia~~aGadfvKTSTGf~~~g  192 (251)
T d1o0ya_         117 ADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYL----DTEEKIAACVISKLAGAHFVKTSTGFGTGG  192 (251)
T ss_dssp             CSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGC----CHHHHHHHHHHHHHTTCSEEECCCSSSSCC
T ss_pred             CceEEEEeccchhhcCCHHHHHHHHHHHHHHhcccceeeeeccccc----CcHHHHHHHHHHHHhCcceeeccCCCCCCC
Confidence            99999976642       112   222332 344577888865544    567888888888999999999854    34


Q ss_pred             CCHHHHHHHHHH
Q 012352          177 LDITDVARVFQI  188 (465)
Q Consensus       177 ~~~~D~~~ll~~  188 (465)
                      .+++|+..+.+.
T Consensus       193 at~e~V~~m~~~  204 (251)
T d1o0ya_         193 ATAEDVHLMKWI  204 (251)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHH
Confidence            688888655544

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.46  E-value=0.022  Score=46.06  Aligned_cols=34  Identities=29%  Similarity=0.290  Sum_probs=31.5

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      .|+++|+|+|-+|..+|..|+++|.+|+++.|.+
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~   58 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS   58 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcc
Confidence            4799999999999999999999999999998853

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=93.44  E-value=1  Score=40.45  Aligned_cols=159  Identities=19%  Similarity=0.210  Sum_probs=93.4

Q ss_pred             CCHHHHHHHHHhhhhcCCCEEEEEecCCC-CCCc-hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHH---HHHH
Q 012352           33 ESVDKMVVDMGKANASGADLVEIRLDGLK-NFNP-RENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDV---LRLA  107 (465)
Q Consensus        33 ~t~~e~~~~~~~~~~~~~D~vElRlD~l~-~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~~---l~~~  107 (465)
                      .++++++    .+.+.|+|-|||.-++-. .+.| ...++.+++..++|+-+-+|.+  ||.|--+++|....   ++.+
T Consensus         8 ~s~~~a~----~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~iPv~vMIRPR--~GdF~Ys~~E~~~M~~di~~~   81 (247)
T d1twda_           8 YSMECAL----TAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRPR--GGDFCYSDGEFAAILEDVRTV   81 (247)
T ss_dssp             SSHHHHH----HHHHTTCSEEEECBCGGGTCBCCCHHHHHHHHHHCCSCEEEBCCSS--SSCSCCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHH----HHHHcCCCEEEEcCCcccCCCCCCHHHHHHHHHhcCCCeEEEEecC--CCCCCCCHHHHHHHHHHHHHH
Confidence            4555544    445679999999987654 3344 2346667777899999999965  55666676665444   4556


Q ss_pred             HHhCCcEEEEee-----ccccchhHHHHhcCCCCcEEEEEecc-CCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHH
Q 012352          108 MELGADYIDVEL-----QVAREFNDSIRGKKPEKCKVIVSSHN-YQYTPSVEDLSNLVARIQASGADIVKFATTALDITD  181 (465)
Q Consensus       108 ~~~~~~~iDiEl-----~~~~~~~~~l~~~~~~~~~iI~S~H~-f~~tps~~el~~~~~~~~~~gadivKia~~~~~~~D  181 (465)
                      .+.|++.|=+=.     +.+.+..+++... ..+.++  -||- |+.+++.   .+-++.+.++|.+=+==.--+.+..|
T Consensus        82 k~~G~dGvV~G~L~~dg~iD~~~~~~L~~~-a~~l~v--TFHRAfD~~~d~---~~al~~Li~lG~~rILTSGg~~~a~~  155 (247)
T d1twda_          82 RELGFPGLVTGVLDVDGNVDMPRMEKIMAA-AGPLAV--TFHRAFDMCANP---LYTLNNLAELGIARVLTSGQKSDALQ  155 (247)
T ss_dssp             HHTTCSEEEECCBCTTSSBCHHHHHHHHHH-HTTSEE--EECGGGGGCSCH---HHHHHHHHHHTCCEEEECTTSSSTTT
T ss_pred             HHcCCCeEEEEEECCCCCccHHHHHHHHHH-hcccCe--eeehhhhhhCCH---HHHHHHHHhcCCCeEeccCCCCchhH
Confidence            677888765532     2233445555532 234554  4576 8888865   45556666678543322222344555


Q ss_pred             HHHHHHH-hccCCCCEEEEecCc
Q 012352          182 VARVFQI-TVHSQVPIIGLVMGE  203 (465)
Q Consensus       182 ~~~ll~~-~~~~~~p~i~~~MG~  203 (465)
                      .+.+++- ....+.++|..+-|-
T Consensus       156 G~~~L~~L~~~a~~~iIm~GgGI  178 (247)
T d1twda_         156 GLSKIMELIAHRDAPIIMAGAGV  178 (247)
T ss_dssp             THHHHHHHHTSSSCCEEEEESSC
T ss_pred             HHHHHHHHHHhcCCcEEEecCCC
Confidence            5544443 344455555444443

>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]

Probab=93.43  E-value=0.91  Score=39.29  Aligned_cols=152  Identities=13%  Similarity=0.171  Sum_probs=87.1

Q ss_pred             eeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCch---hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 012352           29 PIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR---ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (465)
Q Consensus        29 ~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~~l~  105 (465)
                      .|+.++.....+.+++++..|+++|-+|.=.+...+-.   ..++.+.+..+.|+|+.-+                  +.
T Consensus        10 ~ITd~~~~~~~~~v~~~l~~Gv~~vqlR~k~~~~~e~~~~a~~l~~i~~~~~~~liind~------------------~~   71 (206)
T d1xi3a_          10 VITDRRLKPEVESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLTREYDALFFVDDR------------------VD   71 (206)
T ss_dssp             EECCTTTSCHHHHHHHHHHTTCSEEEECCCSCCHHHHHHHHHHHHHHHHHTTCEEEEESC------------------HH
T ss_pred             EEeCCcccCHHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEechh------------------HH
Confidence            45666666677888888889999999997544421111   2234444567889987522                  23


Q ss_pred             HHHHhCCcEEEEeeccccchhHHHHhcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCC--H----
Q 012352          106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALD--I----  179 (465)
Q Consensus       106 ~~~~~~~~~iDiEl~~~~~~~~~l~~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKia~~~~~--~----  179 (465)
                      .|.+.+++.|=+.-+...  ..... ....+.-+..|.|+      .++    +.+....|+|++=+-..-.|  .    
T Consensus        72 lA~~~~adGvHl~~~~~~--~~~~~-~~~~~~iig~s~h~------~~e----~~~a~~~g~DYi~~gpvf~T~tk~~~~  138 (206)
T d1xi3a_          72 VALAVDADGVQLGPEDMP--IEVAK-EIAPNLIIGASVYS------LEE----ALEAEKKGADYLGAGSVFPTKTKEDAR  138 (206)
T ss_dssp             HHHHHTCSEEEECTTSCC--HHHHH-HHCTTSEEEEEESS------HHH----HHHHHHHTCSEEEEECSSCC----CCC
T ss_pred             HHHhccCceEeecccccc--Hhhhh-hcccccccccccCC------HHH----HHHHHhcCCCEEEeccccccccccccc
Confidence            456678888776433211  11111 12345567778885      333    44556679998876632211  1    


Q ss_pred             -HHHHHHHHHhccCCCCEEEEecCccchhhhhh
Q 012352          180 -TDVARVFQITVHSQVPIIGLVMGERGLISRIL  211 (465)
Q Consensus       180 -~D~~~ll~~~~~~~~p~i~~~MG~~G~~sRi~  211 (465)
                       -....+-++.+..+.|+++++==..-.+..++
T Consensus       139 ~~g~~~l~~~~~~~~~Pv~AiGGI~~~ni~~~~  171 (206)
T d1xi3a_         139 VIGLEGLRKIVESVKIPVVAIGGINKDNAREVL  171 (206)
T ss_dssp             CCHHHHHHHHHHHCSSCEEEESSCCTTTHHHHH
T ss_pred             cccHHHHHHHHHhcCCCEEEECCCCHHHHHHHH
Confidence             23333444445568898887543444455544

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=93.24  E-value=0.031  Score=50.50  Aligned_cols=32  Identities=28%  Similarity=0.314  Sum_probs=29.9

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      .|+|||+|-+|.++|+.|++.|.+|+|+.|+.
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            49999999999999999999999999999863

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=93.21  E-value=0.047  Score=45.83  Aligned_cols=73  Identities=14%  Similarity=0.078  Sum_probs=49.1

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCC---------eEEEEECCHHHHHHHHHHHCCcc-------cchhcccccCCCCeeEE
Q 012352          383 LFVVIGA-GGAGKALAYGAKAKGA---------RVVIANRTYDRARELAETVGGHA-------LSLADLENFNPEDGMIL  445 (465)
Q Consensus       383 ~vlV~Ga-Gg~g~ai~~~L~~~G~---------~v~i~~R~~~~a~~la~~~~~~~-------~~~~~l~~~~~~~~Dil  445 (465)
                      +|.|+|| |.+|..+++.|+..+.         ++...+++.++++.++..+....       ....+..+ .+.++|+|
T Consensus         6 KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~advV   84 (154)
T d1y7ta1           6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKV-AFKDADYA   84 (154)
T ss_dssp             EEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHH-HTTTCSEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhh-hcccccEE
Confidence            7999997 8999999999987552         23334567777777776654211       01112223 46789999


Q ss_pred             EecCCCCCCCC
Q 012352          446 ANTTSIGMQPK  456 (465)
Q Consensus       446 InaT~~gm~~~  456 (465)
                      |.+++....|.
T Consensus        85 iitaG~~~~pg   95 (154)
T d1y7ta1          85 LLVGAAPRKAG   95 (154)
T ss_dssp             EECCCCCCCTT
T ss_pred             EeecCcCCCCC
Confidence            99998765544

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.11  E-value=0.046  Score=43.49  Aligned_cols=35  Identities=29%  Similarity=0.335  Sum_probs=32.1

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      .+|+++|+|+|-+|..+|..|+..|.+|+++.|.+
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcchhheEeeccc
Confidence            46899999999999999999999999999998853

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.02  E-value=0.069  Score=44.49  Aligned_cols=72  Identities=22%  Similarity=0.239  Sum_probs=45.9

Q ss_pred             EEEEEc-cchhHHHHHHHHHH-CCC--eEEEEECCHHHHHHHHHHHCC-c-c-----cchhcccccCCCCeeEEEecCCC
Q 012352          383 LFVVIG-AGGAGKALAYGAKA-KGA--RVVIANRTYDRARELAETVGG-H-A-----LSLADLENFNPEDGMILANTTSI  451 (465)
Q Consensus       383 ~vlV~G-aGg~g~ai~~~L~~-~G~--~v~i~~R~~~~a~~la~~~~~-~-~-----~~~~~l~~~~~~~~DilInaT~~  451 (465)
                      ++.|+| +|.+|.++++.|+. .+.  ++.+++..+ +++..+-++.. . .     +...+..+ .+.++|+||.+++.
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~~~~~~~~-~~~~aDvvvitaG~   79 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGV   79 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEEECSSCCHH-HHTTCSEEEECCSC
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcEEEcCCCcc-ccCCCCEEEECCCc
Confidence            688999 59999999999864 453  899999864 45554444421 1 0     00011111 24578999999887


Q ss_pred             CCCCC
Q 012352          452 GMQPK  456 (465)
Q Consensus       452 gm~~~  456 (465)
                      .-.|.
T Consensus        80 ~~k~g   84 (145)
T d2cmda1          80 RRKPG   84 (145)
T ss_dssp             CCCTT
T ss_pred             cCCCC
Confidence            65443

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=92.95  E-value=0.037  Score=49.93  Aligned_cols=34  Identities=24%  Similarity=0.306  Sum_probs=30.8

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCH
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      .|+|||+|+ |-+|+.++.+|.+.|.+|+++.|+.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~   37 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   37 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence            578999998 6899999999999999999999864

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=92.93  E-value=0.25  Score=44.53  Aligned_cols=51  Identities=24%  Similarity=0.361  Sum_probs=39.4

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEE
Q 012352          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIAN  411 (465)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~  411 (465)
                      +.|.+.+++..+..       .+.++++|+|+|-|.|.+|..++..|.+.|++|+.++
T Consensus        11 g~Gv~~~~~~~~~~-------~~~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vs   61 (242)
T d1v9la1          11 GFGVAVATREMAKK-------LWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVS   61 (242)
T ss_dssp             HHHHHHHHHHHHHH-------HHSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             hHHHHHHHHHHHHH-------cCCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEee
Confidence            56666666544321       1257899999999999999999999999999876554

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.87  E-value=0.023  Score=49.68  Aligned_cols=69  Identities=16%  Similarity=0.043  Sum_probs=43.6

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCC
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~--~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~g  452 (465)
                      .|++||+|+ |-+|+.++..|.+.|.  +|+...|++....   ..+.....++.++........|.+|++.+..
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~---~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEH---PRLDNPVGPLAELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCC---TTEECCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhc---ccccccccchhhhhhccccchheeeeeeeee
Confidence            489999999 7899999999999996  6777777642100   0000111233333221344579999997654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.80  E-value=0.042  Score=44.55  Aligned_cols=45  Identities=16%  Similarity=0.191  Sum_probs=37.0

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEECC--------HHHHHHHHHHHC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRT--------YDRARELAETVG  425 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~--------~~~a~~la~~~~  425 (465)
                      .++++|+|+|-+|..+|..|+.+|.+|+++.|.        ++-++.+.+.+.
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~~~l~   78 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNE   78 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHG
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHHHHHH
Confidence            479999999999999999999999999999874        344555555554

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.70  E-value=0.031  Score=51.01  Aligned_cols=34  Identities=29%  Similarity=0.332  Sum_probs=31.2

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYD  415 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~  415 (465)
                      .+|+|+|+|.+|.++|..|++.|.+|+|+.|.++
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3699999999999999999999999999998754

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.70  E-value=0.043  Score=49.02  Aligned_cols=32  Identities=22%  Similarity=0.338  Sum_probs=29.6

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC-eEEEEECCH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY  414 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~  414 (465)
                      +|+|+|+|.+|.++|..|++.|. +|+|+.|.+
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            69999999999999999999997 899999864

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.54  E-value=0.032  Score=49.12  Aligned_cols=33  Identities=12%  Similarity=0.053  Sum_probs=29.7

Q ss_pred             cEEEEEccchhHHHHHHHHHHCC-------CeEEEEECCH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKG-------ARVVIANRTY  414 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G-------~~v~i~~R~~  414 (465)
                      .+|+|||+|.+|.++|+.|+++|       ++|+|+.+.+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            58999999999999999999887       4799999864

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=92.45  E-value=0.046  Score=49.73  Aligned_cols=34  Identities=18%  Similarity=0.273  Sum_probs=30.3

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCH
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      .++|||+|+ |-+|+.++.+|.+.|.+|+++.|+.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   37 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   37 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            457999997 7799999999999999999999964

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.37  E-value=0.05  Score=51.02  Aligned_cols=33  Identities=30%  Similarity=0.369  Sum_probs=30.0

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC--eEEEEECCH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTY  414 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~  414 (465)
                      |+|+|||||.+|.++|.+|++.|.  +|+|+.|+.
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            799999999999999999988874  899999875

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=92.37  E-value=0.045  Score=50.27  Aligned_cols=31  Identities=29%  Similarity=0.442  Sum_probs=29.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC-eEEEEECC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~  413 (465)
                      +|+|||+|-+|.++|+.|++.|. +|+|+.|+
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            59999999999999999999997 79999886

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=92.27  E-value=0.034  Score=47.69  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=30.5

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      +++.|+|||+|.+|..+|..+++.|.+++|+.|.
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM   37 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEee
Confidence            4678999999999999999999999999998753

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=92.23  E-value=0.11  Score=44.73  Aligned_cols=70  Identities=13%  Similarity=0.166  Sum_probs=46.4

Q ss_pred             CcEEEEE--ccchhHHHHHHHHHHCCCeEEEEECCHHHHH---HHHHHHCCcc-cchh-----c----ccc---cCCCCe
Q 012352          381 GKLFVVI--GAGGAGKALAYGAKAKGARVVIANRTYDRAR---ELAETVGGHA-LSLA-----D----LEN---FNPEDG  442 (465)
Q Consensus       381 ~k~vlV~--GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~---~la~~~~~~~-~~~~-----~----l~~---~~~~~~  442 (465)
                      +.+++|+  |+|++|.+++...+..|++|+.+.|+.++.+   +.+++++... ++.+     +    +.+   .....+
T Consensus        29 g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~v  108 (189)
T d1gu7a2          29 GKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEA  108 (189)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCCE
T ss_pred             CCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCCc
Confidence            5678888  4578999999999999998887776654443   3456777532 3221     1    111   023568


Q ss_pred             eEEEecCC
Q 012352          443 MILANTTS  450 (465)
Q Consensus       443 DilInaT~  450 (465)
                      |+++|+.+
T Consensus       109 dvv~D~vg  116 (189)
T d1gu7a2         109 KLALNCVG  116 (189)
T ss_dssp             EEEEESSC
T ss_pred             eEEEECCC
Confidence            99999875

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.11  E-value=0.057  Score=42.30  Aligned_cols=38  Identities=11%  Similarity=0.200  Sum_probs=31.9

Q ss_pred             ccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       376 ~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      ...++||+|+|+|+|..|.-++..|+..+.++++..|.
T Consensus        27 ~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r   64 (107)
T d2gv8a2          27 PELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLL   64 (107)
T ss_dssp             GGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred             hhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence            35688999999999999999999998887776666654

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.01  E-value=0.061  Score=45.56  Aligned_cols=69  Identities=13%  Similarity=0.130  Sum_probs=41.3

Q ss_pred             EEEEEccchhHHHHHHH--HHH---CCC-eEEEEECCHHHHHHHHHHHC----Cc-ccch-hcccccCCCCeeEEEecCC
Q 012352          383 LFVVIGAGGAGKALAYG--AKA---KGA-RVVIANRTYDRARELAETVG----GH-ALSL-ADLENFNPEDGMILANTTS  450 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~--L~~---~G~-~v~i~~R~~~~a~~la~~~~----~~-~~~~-~~l~~~~~~~~DilInaT~  450 (465)
                      ++.|+|+|..|.+.++.  +..   ... ++.+++.++++++...+...    .. .+.. .+..+ .+.++|+||++++
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~-~l~~aDvVVita~   80 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEG-AVVDAKYVIFQFR   80 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHH-HHTTCSEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCccc-ccCCCCEEEEecc
Confidence            58999999555444433  222   223 89999999999876443221    10 0100 11222 3567899999998


Q ss_pred             CC
Q 012352          451 IG  452 (465)
Q Consensus       451 ~g  452 (465)
                      .+
T Consensus        81 ~~   82 (162)
T d1up7a1          81 PG   82 (162)
T ss_dssp             TT
T ss_pred             cC
Confidence            75

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.90  E-value=0.15  Score=47.63  Aligned_cols=72  Identities=21%  Similarity=0.258  Sum_probs=44.6

Q ss_pred             cEEEEEccc-hhHHHHHHHHHHCCCeEEEEECC----HHHHHHHHHHHCCc----ccchhc---cccc-CCCCeeEEEec
Q 012352          382 KLFVVIGAG-GAGKALAYGAKAKGARVVIANRT----YDRARELAETVGGH----ALSLAD---LENF-NPEDGMILANT  448 (465)
Q Consensus       382 k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R~----~~~a~~la~~~~~~----~~~~~~---l~~~-~~~~~DilIna  448 (465)
                      |.|||+|+. -+|+.++..|.+.|++|++++|-    .+............    ..++.+   +... ...++|+||++
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vihl   81 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHF   81 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEEc
Confidence            679999985 69999999999999999998652    22222222222211    123322   2210 11268999999


Q ss_pred             CCCCC
Q 012352          449 TSIGM  453 (465)
Q Consensus       449 T~~gm  453 (465)
                      ++...
T Consensus        82 Aa~~~   86 (347)
T d1z45a2          82 AGLKA   86 (347)
T ss_dssp             CSCCC
T ss_pred             ccccc
Confidence            87653

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.79  E-value=0.058  Score=47.52  Aligned_cols=33  Identities=27%  Similarity=0.247  Sum_probs=28.9

Q ss_pred             cEEEEEccchhHHHHHHHHHHC--CCeEEEEECCH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAK--GARVVIANRTY  414 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~--G~~v~i~~R~~  414 (465)
                      .+|+|||+|.+|.++|..|.+.  |++|+|+.+.+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            3799999999999999999765  67999999875

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=91.78  E-value=0.083  Score=42.53  Aligned_cols=66  Identities=14%  Similarity=0.191  Sum_probs=47.1

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCccc-----chhcccccCCCCeeEEEecCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL-----SLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~-----~~~~l~~~~~~~~DilInaT~  450 (465)
                      |+++|+|.|..|+.++..|.  |..|+++..++++.+.+.+ .+...+     +-+.+.+..+.+++.+|-+++
T Consensus         1 kHivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~~~-~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~   71 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR--GSEVFVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVNLE   71 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC--GGGEEEEESCTTHHHHHHH-TTCEEEESCTTSHHHHHHTTCTTCSEEEECCS
T ss_pred             CEEEEECCCHHHHHHHHHHc--CCCCEEEEcchHHHHHHHh-cCccccccccCCHHHHHHhhhhcCcEEEEecc
Confidence            57999999999999999985  4568889999998877653 332221     222243335677888888775

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=91.77  E-value=0.15  Score=45.52  Aligned_cols=37  Identities=27%  Similarity=0.285  Sum_probs=34.0

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~  413 (465)
                      ..+++.+++++|+|.+|-+++..+.+++. ++++++|.
T Consensus        22 ~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          22 KKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            56888999999999999999999999998 89999985

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.74  E-value=0.082  Score=48.69  Aligned_cols=33  Identities=30%  Similarity=0.182  Sum_probs=29.5

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEECCH
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      |+|||+|+ |-+|+.++..|.+.|++|+.++|..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            68999999 5699999999999999999998853

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.70  E-value=0.071  Score=48.83  Aligned_cols=30  Identities=33%  Similarity=0.405  Sum_probs=28.1

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          384 FVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       384 vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      |+|||||-+|.++|+.|++.|.+|+|+.++
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~   31 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEAR   31 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecC
Confidence            799999999999999999999999999763

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=91.55  E-value=0.068  Score=47.37  Aligned_cols=32  Identities=34%  Similarity=0.547  Sum_probs=29.5

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      .|+|+|+|.+|..+|..|++.|.+|+|+.++.
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~   35 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN   35 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            48999999999999999999999999998764

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=91.55  E-value=0.061  Score=48.28  Aligned_cols=34  Identities=26%  Similarity=0.283  Sum_probs=31.0

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYD  415 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~  415 (465)
                      ..|+|||+|.+|..+|..|++.|.+|.|+.++..
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~   38 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK   38 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            4599999999999999999999999999998754

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=91.54  E-value=0.12  Score=48.15  Aligned_cols=30  Identities=20%  Similarity=0.255  Sum_probs=27.1

Q ss_pred             EEEEEccc-hhHHHHHHHHHHCCCeEEEEEC
Q 012352          383 LFVVIGAG-GAGKALAYGAKAKGARVVIANR  412 (465)
Q Consensus       383 ~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R  412 (465)
                      +|||+|++ -+|+.++..|.+.|++|++++|
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            59999985 6999999999999999999876

>d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.50  E-value=1.6  Score=39.48  Aligned_cols=147  Identities=15%  Similarity=0.201  Sum_probs=94.8

Q ss_pred             CCHHHHHHHHHhhhhcCCCEEEEEecCCC----CCCchhHHHHHH---hh-CCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 012352           33 ESVDKMVVDMGKANASGADLVEIRLDGLK----NFNPRENIKTLI---KE-SPVPTLFTYRPIWEGGQYDGDENERVDVL  104 (465)
Q Consensus        33 ~t~~e~~~~~~~~~~~~~D~vElRlD~l~----~~~~~~~l~~l~---~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~~l  104 (465)
                      .+.+++++.+++....|||+|.+=.-.-.    ..+..+++.++.   +. .+..+++.+-|            .+.+..
T Consensus        23 ~~~~~a~~~~~~m~~~GAdiIDIGaeSTrPga~~is~~eE~~Rl~pvi~~l~~~~~~iSIDT------------~~~eVa   90 (264)
T d1ad1a_          23 NNVESAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEEELNRVLPVVEAIVGFDVKISVDT------------FRSEVA   90 (264)
T ss_dssp             CSHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTSSSEEEEEC------------SCHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCcCCHHHHHHhhhhHhhhhcccCcccchhh------------hhHHHH
Confidence            47889999999999999999998776543    234445555543   22 23455666664            234688


Q ss_pred             HHHHHhCCcEEE-Ee-eccccchhHHHHhcCCCCcEEEEEeccCCCCC-C---HHH----HHHHHHHHHHcCCCEEEEEe
Q 012352          105 RLAMELGADYID-VE-LQVAREFNDSIRGKKPEKCKVIVSSHNYQYTP-S---VED----LSNLVARIQASGADIVKFAT  174 (465)
Q Consensus       105 ~~~~~~~~~~iD-iE-l~~~~~~~~~l~~~~~~~~~iI~S~H~f~~tp-s---~~e----l~~~~~~~~~~gadivKia~  174 (465)
                      +.|++.|+++|- |- ...+++..+.+ .  ..+..+|+- |. .++| .   .++    +.+.++.+.+.|.+--+|..
T Consensus        91 ~~al~~Ga~iINDVs~g~~d~~~~~~v-a--~~~~~~ilm-H~-~~~~~~~~~~~~v~~~~~~~~~~~~~~Gi~~~~Iil  165 (264)
T d1ad1a_          91 EACLKLGVDIINDQWAGLYDHRMFQVV-A--KYDAEIVLM-HN-GNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWL  165 (264)
T ss_dssp             HHHHHTTCCEEEETTTTSSCTHHHHHH-H--HTTCEEEEE-CC-CCTTCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             HHHHhcCCcEeeccccccccccHHHHH-h--hcCcceeee-ee-ccccccCccchhhhhHHHHHHHHHHhhccccceEEe
Confidence            899999999885 53 23344444333 2  246778875 43 2333 2   233    45556677888877677887


Q ss_pred             ec-----CCHHHHHHHHHHhcc---CCCCE
Q 012352          175 TA-----LDITDVARVFQITVH---SQVPI  196 (465)
Q Consensus       175 ~~-----~~~~D~~~ll~~~~~---~~~p~  196 (465)
                      =|     ++.++++.|++-+..   .+.|+
T Consensus       166 DPGiGFgKt~~~n~~ll~~l~~~~~~g~Pi  195 (264)
T d1ad1a_         166 DPGIGFAKTRNEEAEVMARLDELVATEYPV  195 (264)
T ss_dssp             ECCTTSSCCHHHHHHHHHCHHHHHTTCSCB
T ss_pred             ccCcCccccchhHHHHHHHHHHhhccCCce
Confidence            44     899999999886543   36674

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=91.31  E-value=0.073  Score=48.11  Aligned_cols=31  Identities=26%  Similarity=0.514  Sum_probs=29.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      -|+|||+|-+|.++|+.|++.|.+|+|+.|.
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4899999999999999999999999999874

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.31  E-value=0.11  Score=44.15  Aligned_cols=70  Identities=10%  Similarity=0.042  Sum_probs=42.0

Q ss_pred             EEEEEccc--hhHHHHHHHHHHC---CC-eEEEEECCHHH--HHHHHH-------HHCCcc--cchhcccccCCCCeeEE
Q 012352          383 LFVVIGAG--GAGKALAYGAKAK---GA-RVVIANRTYDR--ARELAE-------TVGGHA--LSLADLENFNPEDGMIL  445 (465)
Q Consensus       383 ~vlV~GaG--g~g~ai~~~L~~~---G~-~v~i~~R~~~~--a~~la~-------~~~~~~--~~~~~l~~~~~~~~Dil  445 (465)
                      ++.|+|+|  |.+.+++.-++..   .. +|++++.++++  ++.+-.       .++...  ....+..+ .+.++|+|
T Consensus         3 KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~-al~gaDvV   81 (169)
T d1s6ya1           3 KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRR-ALDGADFV   81 (169)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHH-HHTTCSEE
T ss_pred             EEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchh-hcCCCCEE
Confidence            78999999  5566666555543   23 89999998754  433221       111111  11122223 35678999


Q ss_pred             EecCCCCC
Q 012352          446 ANTTSIGM  453 (465)
Q Consensus       446 InaT~~gm  453 (465)
                      |++++.+-
T Consensus        82 v~ta~~~~   89 (169)
T d1s6ya1          82 TTQFRVGG   89 (169)
T ss_dssp             EECCCTTH
T ss_pred             EEccccCC
Confidence            99999874

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.28  E-value=0.1  Score=49.82  Aligned_cols=31  Identities=32%  Similarity=0.351  Sum_probs=27.6

Q ss_pred             CcEEEEEccc-hhHHHHHHHHHHCCCeEEEEE
Q 012352          381 GKLFVVIGAG-GAGKALAYGAKAKGARVVIAN  411 (465)
Q Consensus       381 ~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~  411 (465)
                      |++|||+|+. -+|..++..|.+.|++|++++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            5799999995 599999999999999999986

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.23  E-value=0.13  Score=44.84  Aligned_cols=39  Identities=18%  Similarity=0.212  Sum_probs=35.8

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELA  421 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la  421 (465)
                      ++.|+|+|-+|..++..|++.|.+|+.++.+.++.+++.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln   40 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLIN   40 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhc
Confidence            588999999999999999999999999999999887765

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.18  E-value=0.63  Score=42.95  Aligned_cols=76  Identities=20%  Similarity=0.152  Sum_probs=48.1

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEE-----------CCHHHHHHHHHHHCCcc-cchhcc--cccCCCCe
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIAN-----------RTYDRARELAETVGGHA-LSLADL--ENFNPEDG  442 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~-----------R~~~~a~~la~~~~~~~-~~~~~l--~~~~~~~~  442 (465)
                      .++++|+|+|-|.|.+|..++..|.+.|++|+.++           -+.+...+..+..+... ..-..+  .++.-.++
T Consensus        32 ~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (293)
T d1hwxa1          32 PGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDC  111 (293)
T ss_dssp             SSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCCc
Confidence            36889999999999999999999999999876554           35555555544333210 000001  01111357


Q ss_pred             eEEEecCCCC
Q 012352          443 MILANTTSIG  452 (465)
Q Consensus       443 DilInaT~~g  452 (465)
                      |++|=|+--+
T Consensus       112 DIliPaA~~~  121 (293)
T d1hwxa1         112 DILIPAASEK  121 (293)
T ss_dssp             SEEEECSSSS
T ss_pred             cEEeeccccc
Confidence            8888876444

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.10  E-value=0.044  Score=53.98  Aligned_cols=34  Identities=29%  Similarity=0.392  Sum_probs=31.0

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEEC
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANR  412 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R  412 (465)
                      +++.+|||+|+||+|..++..|+..|+ +++|++.
T Consensus        35 l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~   69 (426)
T d1yovb1          35 LDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDM   69 (426)
T ss_dssp             HHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECC
T ss_pred             HhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEEC
Confidence            456789999999999999999999999 9999974

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=91.05  E-value=0.13  Score=45.88  Aligned_cols=69  Identities=13%  Similarity=0.079  Sum_probs=48.7

Q ss_pred             cEEEEEccch----hHHHHHHHHHHC--CCeEE-EEECCHHHHHHHHHHHCCcc----cchhcccccCCCCeeEEEecCC
Q 012352          382 KLFVVIGAGG----AGKALAYGAKAK--GARVV-IANRTYDRARELAETVGGHA----LSLADLENFNPEDGMILANTTS  450 (465)
Q Consensus       382 k~vlV~GaGg----~g~ai~~~L~~~--G~~v~-i~~R~~~~a~~la~~~~~~~----~~~~~l~~~~~~~~DilInaT~  450 (465)
                      =++.|+|+|+    +++.-+.++.+.  +++|+ |++|+.+++++++++++...    -+++++-+  -.+.|+|+.+||
T Consensus        17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~iD~V~i~tp   94 (237)
T d2nvwa1          17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQ--YKDIDMIVVSVK   94 (237)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHH--CTTCSEEEECSC
T ss_pred             eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhccc--ccccceeeccCC
Confidence            3799999986    555555666654  45655 89999999999999987432    24444432  246899999998


Q ss_pred             CC
Q 012352          451 IG  452 (465)
Q Consensus       451 ~g  452 (465)
                      ..
T Consensus        95 ~~   96 (237)
T d2nvwa1          95 VP   96 (237)
T ss_dssp             HH
T ss_pred             Cc
Confidence            54

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.03  E-value=0.062  Score=45.21  Aligned_cols=31  Identities=32%  Similarity=0.458  Sum_probs=26.8

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEE
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIAN  411 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~  411 (465)
                      +++|+|+|+|.+|-.++..|.++|.+++|+-
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~   33 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRL   33 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEE
Confidence            6799999999999999999999998655443

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=90.59  E-value=0.14  Score=43.27  Aligned_cols=65  Identities=15%  Similarity=0.191  Sum_probs=44.0

Q ss_pred             cEEEEEccchhHHHHHHHHHHC-CCe-EEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCCC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAK-GAR-VVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~-G~~-v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      -++.|+|+|.+|+..+.++.+. +++ +.|++|+.++...      .......+... ...+.|+|+.+||..+
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~------~~~~~~~~~~~-~~~~~D~Vvi~tp~~~   70 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK------TPVFDVADVDK-HADDVDVLFLCMGSAT   70 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS------SCEEEGGGGGG-TTTTCSEEEECSCTTT
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccc------cccccchhhhh-hccccceEEEeCCCcc
Confidence            3789999999999999999876 454 5688888553211      11112223333 3457899999999874

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.44  E-value=0.085  Score=48.84  Aligned_cols=31  Identities=19%  Similarity=0.389  Sum_probs=29.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      .++|||||-+|.++|+.|++.|.+|+|+.++
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~   33 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKR   33 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECC
Confidence            5899999999999999999999999999875

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.38  E-value=0.075  Score=45.66  Aligned_cols=32  Identities=16%  Similarity=0.230  Sum_probs=29.1

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEEC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANR  412 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R  412 (465)
                      .++|+|+|+|.+|..+|..+++.|.+++|+.+
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~   36 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEG   36 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECC
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEe
Confidence            57899999999999999999999999888864

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=90.36  E-value=0.12  Score=44.94  Aligned_cols=38  Identities=24%  Similarity=0.361  Sum_probs=33.0

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      .+++||+|+|+|+|..|--++..++..+.+++++-|+.
T Consensus        28 ~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            45789999999999999999999999999877776653

>d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: KguE-like
domain: Hypothetical protein PA2260
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.25  E-value=0.89  Score=40.19  Aligned_cols=76  Identities=25%  Similarity=0.279  Sum_probs=49.1

Q ss_pred             HHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEe--ccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEee
Q 012352           42 MGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTY--RPIWEGGQYDGDENERVDVLRLAMELGADYIDVEL  119 (465)
Q Consensus        42 ~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~--R~~~eGG~~~~~~~~~~~~l~~~~~~~~~~iDiEl  119 (465)
                      ++.++..|+|.||+|-+++.+....+.++.+++..++++....  ....+.+..   .++..+.+..|...|+.+|-+..
T Consensus        25 l~~~a~~G~dgIEi~~~~~~~~~~~~~l~~~~~~~GL~i~~~~~~~~~~~~~~~---~~~~~~~i~~A~~LG~~~v~~~~  101 (250)
T d1yx1a1          25 LPLLAMAGAQRVELREELFAGPPDTEALTAAIQLQGLECVFSSPLELWREDGQL---NPELEPTLRRAEACGAGWLKVSL  101 (250)
T ss_dssp             HHHHHHHTCSEEEEEGGGCSSCCCHHHHHHHHHHTTCEEEEEEEEEEECTTSSB---CTTHHHHHHHHHHTTCSEEEEEE
T ss_pred             HHHHHHhCCCEEEEecccCCCcchHHHHHHHHHHcCCEEEEecccccccCchhh---HHHHHHHHHHHHHhCCCEEEEee
Confidence            3444567999999999888765545678888888888764321  111222221   23445567788888988887755


Q ss_pred             c
Q 012352          120 Q  120 (465)
Q Consensus       120 ~  120 (465)
                      .
T Consensus       102 g  102 (250)
T d1yx1a1         102 G  102 (250)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.24  E-value=0.11  Score=45.06  Aligned_cols=31  Identities=26%  Similarity=0.339  Sum_probs=28.9

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      -|+|||+|.+|.++|..++++|.+|+|+.+.
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~   35 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKR   35 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEec
Confidence            5899999999999999999999999999875

>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Archaeal fructose 1,6-bisphosphate aldolase
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=90.23  E-value=3.1  Score=36.95  Aligned_cols=123  Identities=20%  Similarity=0.155  Sum_probs=76.6

Q ss_pred             HhhhhcCCCEEEEEecCCCCCCch--hHHHHHHh---hCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEE
Q 012352           43 GKANASGADLVEIRLDGLKNFNPR--ENIKTLIK---ESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDV  117 (465)
Q Consensus        43 ~~~~~~~~D~vElRlD~l~~~~~~--~~l~~l~~---~~~~PiI~T~R~~~eGG~~~~~~~~~~~~l~~~~~~~~~~iDi  117 (465)
                      ++++..|+|.|=+.+.+-.+.+..  +.+.++.+   +.++|+++-.-.+..+-....+.+.-....+.+.++|+|.+-+
T Consensus        97 e~a~rlGadaV~~~v~~g~~~e~~~l~~~~~v~~e~~~~glP~v~e~~p~g~~~~~~~~~~~v~~aaria~ElGaDivK~  176 (251)
T d1ojxa_          97 EEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKI  176 (251)
T ss_dssp             HHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             HHHHhchhceEEEEEeCCCCchHHHHHHHHHHHHHHHHcCCeEEEEEeecCCccccCCCHHHHHHHHHHHHHhCCCEEEe
Confidence            344567999999999866543221  22333443   3589998886555333333334444444477888899999999


Q ss_pred             eeccccchhHHHHhcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCC
Q 012352          118 ELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGAD  168 (465)
Q Consensus       118 El~~~~~~~~~l~~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gad  168 (465)
                      ++..+.+-...+... .....++++-=  ....+.+++.+.++...+.||-
T Consensus       177 ~~p~~~~~~~~~v~~-a~~~pv~~~gG--~~~~~~~~~l~~~~~a~~~Ga~  224 (251)
T d1ojxa_         177 KYTGDPKTFSWAVKV-AGKVPVLMSGG--PKTKTEEDFLKQVEGVLEAGAL  224 (251)
T ss_dssp             CCCSSHHHHHHHHHH-TTTSCEEEECC--SCCSSHHHHHHHHHHHHHTTCC
T ss_pred             cCCCcHHHHHHHHHh-cCCCceEEeCC--CCCCCHHHHHHHHHHHHHCCCc
Confidence            998765544443321 24556666522  1223567889999888888874

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.23  E-value=0.16  Score=40.12  Aligned_cols=36  Identities=28%  Similarity=0.479  Sum_probs=32.6

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCHH
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYD  415 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~  415 (465)
                      ...++.|+|+|-.||.++.+..++|+++++++.+++
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            356899999999999999999999999999998755

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=90.12  E-value=0.093  Score=48.80  Aligned_cols=34  Identities=24%  Similarity=0.299  Sum_probs=30.6

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      +.-.|+|||||-+|.++++.|.+.|.+++|+.++
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~   39 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETA   39 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcC
Confidence            3457999999999999999999999999999875

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=90.10  E-value=0.12  Score=44.82  Aligned_cols=31  Identities=23%  Similarity=0.381  Sum_probs=29.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      -++|||+|.+|.+++..++++|.+|.|+.++
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            4899999999999999999999999999885

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=90.07  E-value=0.3  Score=44.30  Aligned_cols=50  Identities=22%  Similarity=0.264  Sum_probs=39.2

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHHCCCeEEEE
Q 012352          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIA  410 (465)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~  410 (465)
                      +.|.+.+++..+..       .+.++++++|+|-|.|.+|+.++..|.+.|++|+.+
T Consensus        16 G~Gv~~~~~~~~~~-------~~~~l~g~~v~IQGfGnVG~~~a~~L~e~Gakvvav   65 (255)
T d1bgva1          16 GYGSVYYVEAVMKH-------ENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTL   65 (255)
T ss_dssp             HHHHHHHHHHHHHH-------TTCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEE
T ss_pred             hHHHHHHHHHHHHh-------CCCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            56766666654432       135789999999999999999999999999976644

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=90.01  E-value=0.41  Score=40.83  Aligned_cols=73  Identities=15%  Similarity=0.012  Sum_probs=47.3

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHC---CC----eEEEEECCH--HHHHHHHHHHCCcc-------cchhcccccCCCCeeE
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAK---GA----RVVIANRTY--DRARELAETVGGHA-------LSLADLENFNPEDGMI  444 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~---G~----~v~i~~R~~--~~a~~la~~~~~~~-------~~~~~l~~~~~~~~Di  444 (465)
                      .+|.|+|| |.+|.++++.|++.   |.    .+.+++...  +.++.++-++....       ....+..+ .+.++|+
T Consensus        25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~-~~~~aDv  103 (175)
T d7mdha1          25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYE-VFEDVDW  103 (175)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHH-HTTTCSE
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchh-hccCCce
Confidence            47999997 89999999999863   32    566666654  45566665543211       11122233 4678999


Q ss_pred             EEecCCCCCCC
Q 012352          445 LANTTSIGMQP  455 (465)
Q Consensus       445 lInaT~~gm~~  455 (465)
                      +|-+++....|
T Consensus       104 Vvi~ag~~rkp  114 (175)
T d7mdha1         104 ALLIGAKPRGP  114 (175)
T ss_dssp             EEECCCCCCCT
T ss_pred             EEEeeccCCCC
Confidence            99998776544

>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Putative cytoplasmic protein STM4435
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.00  E-value=1.6  Score=38.77  Aligned_cols=47  Identities=15%  Similarity=0.109  Sum_probs=32.5

Q ss_pred             cCCHHHHHHHHHhhhhcCCCEEEEEecCCCC----CCchhHHHHHHhhCCCcEE
Q 012352           32 GESVDKMVVDMGKANASGADLVEIRLDGLKN----FNPRENIKTLIKESPVPTL   81 (465)
Q Consensus        32 ~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~----~~~~~~l~~l~~~~~~PiI   81 (465)
                      .-++++.++.+.   ..|.|.||||.|....    ....++++.++++.+++++
T Consensus        17 ~l~lee~l~~a~---~~G~dgiEl~~~~~~~~~~~~~~~~~~k~~l~~~gl~i~   67 (271)
T d2q02a1          17 GLSIEAFFRLVK---RLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIV   67 (271)
T ss_dssp             TSCHHHHHHHHH---HTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEE
T ss_pred             CCCHHHHHHHHH---HhCCCEEEEecCcccccccccCCHHHHHHHHHHcCCcEE
Confidence            445777776554   5699999999886542    2234578888888887754

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.93  E-value=0.16  Score=42.43  Aligned_cols=34  Identities=32%  Similarity=0.360  Sum_probs=29.8

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECC
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~  413 (465)
                      .+++|+|||+|.+|--+|..+.++|+ .|+++-|.
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence            46789999999999999999999999 78888764

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=89.89  E-value=0.57  Score=40.66  Aligned_cols=74  Identities=19%  Similarity=0.216  Sum_probs=45.8

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCcccchhcccccCCCCeeEEEecCCCCC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGM  453 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~~~~~~DilInaT~~gm  453 (465)
                      .++.||+||=+|+|-=..+  ..++..|+ +|+-++.+++..+...+.+...-+...++.+ ..+.+|+||.+-|.|.
T Consensus        45 ~dl~Gk~VLDlGcGtG~l~--i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~-l~~~fD~Vi~NPPfg~  119 (197)
T d1ne2a_          45 GNIGGRSVIDAGTGNGILA--CGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGS  119 (197)
T ss_dssp             TSSBTSEEEEETCTTCHHH--HHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC--
T ss_pred             CCCCCCEEEEeCCCCcHHH--HHHHHcCCCcccccccCHHHHHHHHHccccccEEEEehhh-cCCcceEEEeCcccch
Confidence            3578999999999821223  34667787 8999999977655433322211111223333 2357999999988764

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.88  E-value=1  Score=39.15  Aligned_cols=118  Identities=19%  Similarity=0.248  Sum_probs=71.7

Q ss_pred             CcEEEEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEE---EeccCCCCCCCCCCHHH
Q 012352           23 PTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLF---TYRPIWEGGQYDGDENE   99 (465)
Q Consensus        23 ~~~icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~---T~R~~~eGG~~~~~~~~   99 (465)
                      ++.|. .|...+.++.+.-++.+...|++++|+-+.-   .+..+.++.++....--+++   |+.+          .  
T Consensus         9 ~~iip-vlr~~~~~~a~~~~~al~~~Gi~~iEitlr~---p~a~~~i~~l~~~~~~~~~vGaGTV~~----------~--   72 (202)
T d1wa3a1           9 HKIVA-VLRANSVEEAKEKALAVFEGGVHLIEITFTV---PDADTVIKELSFLKEKGAIIGAGTVTS----------V--   72 (202)
T ss_dssp             HCEEE-EECCSSHHHHHHHHHHHHHTTCCEEEEETTS---TTHHHHHHHTHHHHHTTCEEEEESCCS----------H--
T ss_pred             CCEEE-EEECCCHHHHHHHHHHHHHcCCCEEEEecCC---ccHHHHHHHHHHhcCCCcEEEeccccc----------H--
Confidence            44554 4889999999999999989999999998752   12234555554322112333   4332          2  


Q ss_pred             HHHHHHHHHHhCCcEEEEeeccccchhHHHHhcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 012352          100 RVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (465)
Q Consensus       100 ~~~~l~~~~~~~~~~iDiEl~~~~~~~~~l~~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKi  172 (465)
                        +-++.+++.|++++ |-=....++.+...   ..+..+|-..-    ||+  |    +.++.++|+|++|+
T Consensus        73 --~~~~~a~~aGa~fi-vsP~~~~~v~~~~~---~~~i~~iPGv~----Tps--E----i~~A~~~G~~~lK~  129 (202)
T d1wa3a1          73 --EQCRKAVESGAEFI-VSPHLDEEISQFCK---EKGVFYMPGVM----TPT--E----LVKAMKLGHTILKL  129 (202)
T ss_dssp             --HHHHHHHHHTCSEE-ECSSCCHHHHHHHH---HHTCEEECEEC----SHH--H----HHHHHHTTCCEEEE
T ss_pred             --HHHHHHHhhcccEE-eCCCCcHHHHHHHH---hcCCceeCCcC----cHH--H----HHHHHHCCCCEEEe
Confidence              24667888999987 32233333433322   24555555432    554  3    44456799999997

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.87  E-value=0.15  Score=47.05  Aligned_cols=32  Identities=28%  Similarity=0.240  Sum_probs=29.4

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEECC
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      |+|||+|+ |-+|+.++..|.+.|++|+.++|.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECC
Confidence            78999999 569999999999999999999984

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=89.75  E-value=0.11  Score=47.73  Aligned_cols=31  Identities=39%  Similarity=0.652  Sum_probs=29.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      -|+|||+|.+|.++|..|++.|.+|+|+.+.
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~   48 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKE   48 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence            5999999999999999999999999999874

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.37  E-value=0.22  Score=41.41  Aligned_cols=74  Identities=15%  Similarity=0.052  Sum_probs=47.1

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCC-------eEEEEEC--CHHHHHHHHHHHCCcc------cc-hhcccccCCCCeeE
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGA-------RVVIANR--TYDRARELAETVGGHA------LS-LADLENFNPEDGMI  444 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~-------~v~i~~R--~~~~a~~la~~~~~~~------~~-~~~l~~~~~~~~Di  444 (465)
                      -+|.|+|| |.+|.++++.|+..+.       .+.+++.  +.++++.+.-++....      +. ..+..+ .+.++|+
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~dv   82 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEI-AFKDLDV   82 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHH-HTTTCSE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCccccc-ccCCceE
Confidence            38999996 9999999999986442       4677765  4456666654432110      11 111222 4567899


Q ss_pred             EEecCCCCCCCC
Q 012352          445 LANTTSIGMQPK  456 (465)
Q Consensus       445 lInaT~~gm~~~  456 (465)
                      ||-+++....|.
T Consensus        83 VVitag~~~~~g   94 (154)
T d5mdha1          83 AILVGSMPRRDG   94 (154)
T ss_dssp             EEECCSCCCCTT
T ss_pred             EEEecccCCCCC
Confidence            999998766544

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.34  E-value=0.16  Score=44.18  Aligned_cols=31  Identities=29%  Similarity=0.344  Sum_probs=28.9

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      -|+|||+|.+|..+|..+++.|.+|.|+.+.
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~   37 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKR   37 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEec
Confidence            5899999999999999999999999999864

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=89.32  E-value=0.21  Score=40.08  Aligned_cols=38  Identities=13%  Similarity=0.258  Sum_probs=31.1

Q ss_pred             CCcEEEEEccch-----------hHHHHHHHHHHCCCeEEEEECCHHHH
Q 012352          380 AGKLFVVIGAGG-----------AGKALAYGAKAKGARVVIANRTYDRA  417 (465)
Q Consensus       380 ~~k~vlV~GaGg-----------~g~ai~~~L~~~G~~v~i~~R~~~~a  417 (465)
                      ..|+|||+|+|+           .+-.++++|+++|++++++|-|++..
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTV   51 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETV   51 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSS
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhh
Confidence            358999999983           34567888999999999999998753

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.17  E-value=0.19  Score=44.22  Aligned_cols=37  Identities=35%  Similarity=0.441  Sum_probs=31.2

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHH--------------------HCCC-eEEEEECC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAK--------------------AKGA-RVVIANRT  413 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~--------------------~~G~-~v~i~~R~  413 (465)
                      .++.+|+|+|||+|.+|.-+|..|.                    +.|+ +|+++.|.
T Consensus        35 ~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RR   92 (216)
T d1lqta1          35 PDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRR   92 (216)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSS
T ss_pred             ccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEEC
Confidence            4567899999999999998887766                    6788 89999884

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=89.04  E-value=0.17  Score=44.34  Aligned_cols=32  Identities=34%  Similarity=0.531  Sum_probs=29.6

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      -++|||+|.+|.+++..++++|.+|.|+.+..
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            58999999999999999999999999998753

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=88.86  E-value=0.16  Score=42.65  Aligned_cols=31  Identities=29%  Similarity=0.404  Sum_probs=28.3

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      .|+|||+|.+|..++..+++.|.++.++.|.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            4899999999999999999999999999864

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.67  E-value=0.19  Score=43.30  Aligned_cols=32  Identities=31%  Similarity=0.426  Sum_probs=29.3

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      ..++|||+|.+|..++..+++.|.+|.|+.+.
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~   35 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecC
Confidence            35899999999999999999999999999875

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=88.55  E-value=0.14  Score=38.03  Aligned_cols=34  Identities=24%  Similarity=0.310  Sum_probs=31.2

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECCHH
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYD  415 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~  415 (465)
                      |+|.|+|+|-.||.++.+-..+|+++.+++-+.+
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            6899999999999999999999999999987644

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.45  E-value=0.22  Score=44.10  Aligned_cols=38  Identities=21%  Similarity=0.186  Sum_probs=32.6

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHH--------------------CCC-eEEEEECCH
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKA--------------------KGA-RVVIANRTY  414 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~--------------------~G~-~v~i~~R~~  414 (465)
                      .++.+|+|+|||+|.+|.=++..|.+                    .|+ +|+++.|..
T Consensus        35 ~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          35 PDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             CCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             ccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            45679999999999999999988876                    588 999999853

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=88.45  E-value=0.18  Score=43.46  Aligned_cols=31  Identities=26%  Similarity=0.382  Sum_probs=28.6

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      -++|||+|.+|..++..+++.|.+|.|+.+.
T Consensus         5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~   35 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKY   35 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4899999999999999999999999999864

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=88.44  E-value=0.2  Score=40.58  Aligned_cols=38  Identities=24%  Similarity=0.344  Sum_probs=31.5

Q ss_pred             CCcEEEEEccch-----------hHHHHHHHHHHCCCeEEEEECCHHHH
Q 012352          380 AGKLFVVIGAGG-----------AGKALAYGAKAKGARVVIANRTYDRA  417 (465)
Q Consensus       380 ~~k~vlV~GaGg-----------~g~ai~~~L~~~G~~v~i~~R~~~~a  417 (465)
                      ..|+|||+|+|+           ++-.++++|++.|++++++|-|++..
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TV   54 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATI   54 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCG
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhh
Confidence            358999999983           45667889999999999999988753

>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: Transcarboxylase 5S subunit, N-terminal domain
species: Propionibacterium freudenreichii shermanii [TaxId: 1752]

Probab=88.30  E-value=8.3  Score=34.40  Aligned_cols=208  Identities=15%  Similarity=0.069  Sum_probs=122.3

Q ss_pred             HHHHHHhhhhcCCCEEEEEe------cC-CCCCCchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHH
Q 012352           38 MVVDMGKANASGADLVEIRL------DG-LKNFNPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENERVDVLRLAME  109 (465)
Q Consensus        38 ~~~~~~~~~~~~~D~vElRl------D~-l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~~l~~~~~  109 (465)
                      .++-++.+.+.|++.||.=-      +. +...++.+.+..+... ....+.+..|..+--+............+.....
T Consensus        35 ki~i~~~L~~~Gv~~IEvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (303)
T d1rqba2          35 MVGACADIDAAGYWSVECWGGATYDSCIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAE  114 (303)
T ss_dssp             TGGGHHHHHHTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCTTSCEEEEECGGGTTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEeCCCcChHHHHHHhcCchHHHHHHHHhhhhhHHHHHHhcccccccccccchhhhHHHHHHHHH
Confidence            33334455567999999731      00 1111222333333333 3566777888665444444455555555566666


Q ss_pred             hCCcEEEEeeccc--cchhHHHHhcCCCCcEEEEEeccCCCCC-CHHHHHHHHHHHHHcCCCEEEEEeec--CCHHHHHH
Q 012352          110 LGADYIDVELQVA--REFNDSIRGKKPEKCKVIVSSHNYQYTP-SVEDLSNLVARIQASGADIVKFATTA--LDITDVAR  184 (465)
Q Consensus       110 ~~~~~iDiEl~~~--~~~~~~l~~~~~~~~~iI~S~H~f~~tp-s~~el~~~~~~~~~~gadivKia~~~--~~~~D~~~  184 (465)
                      .+.+.+-+--...  +.....+...+..+..+.+....+...+ +.+.+.+..+++.+.|+|.+=++=+.  -+|+++.+
T Consensus       115 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~  194 (303)
T d1rqba2         115 NGMDVFRVFDAMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDMGADSIALKDMAALLKPQPAYD  194 (303)
T ss_dssp             TTCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCSTTCCHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHH
T ss_pred             hhhhHHhhhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCCCCCCHHHHHHHHHHHHhcCCcEEeecCccchhhhHHHHH
Confidence            6677766532221  1112222222223444544444333333 56779999999999999999998555  57999999


Q ss_pred             HHHHhcc---CCCCEEEE--ecCccchhhhhhccccCCccccccccCccCCCCCCCChhhHHhhhcc
Q 012352          185 VFQITVH---SQVPIIGL--VMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (465)
Q Consensus       185 ll~~~~~---~~~p~i~~--~MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApGQ~~~~~l~~~~~~  246 (465)
                      +++.+..   .+.|+-..  +.=.+|...=+..-..|....=+++.+ ..--||..+++++-..++.
T Consensus       195 li~~l~~~~~~~i~i~~H~Hnd~Gla~AN~laA~~aG~~~id~ti~G-lG~~~GN~~te~lv~~L~~  260 (303)
T d1rqba2         195 IIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVDVVDTAISS-MSLGPGHNPTESVAEMLEG  260 (303)
T ss_dssp             HHHHHHHHHCTTCCEEEEEBCTTSCHHHHHHHHHHTTCSEEEEBCGG-GCSTTSBCBHHHHHHHTTT
T ss_pred             HHHHHHhhcCCcccceeccCchHHHHHHHHHHHHHcCCCEEEECCcc-CCCCCCCccHHHHHHHHHh
Confidence            9988654   25677665  444445455556666676655566654 2345899999998766653

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=88.21  E-value=0.15  Score=47.24  Aligned_cols=31  Identities=42%  Similarity=0.699  Sum_probs=29.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      -|+|||+|.+|..++..|++.|.+|.|+.+.
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~   55 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKE   55 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4999999999999999999999999999875

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=88.19  E-value=0.24  Score=40.81  Aligned_cols=35  Identities=23%  Similarity=0.168  Sum_probs=30.6

Q ss_pred             CcEEEEE--ccchhHHHHHHHHHHCCCeEEEEECCHH
Q 012352          381 GKLFVVI--GAGGAGKALAYGAKAKGARVVIANRTYD  415 (465)
Q Consensus       381 ~k~vlV~--GaGg~g~ai~~~L~~~G~~v~i~~R~~~  415 (465)
                      ++.++|+  |+|-+|..+|..|+++|++|+++.|...
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            5678887  7788999999999999999999998753

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=88.15  E-value=0.16  Score=44.10  Aligned_cols=32  Identities=25%  Similarity=0.382  Sum_probs=29.7

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      ..++|||+|.+|..++..++++|.+|+|+.+.
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            46899999999999999999999999999875

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=87.79  E-value=0.065  Score=50.02  Aligned_cols=70  Identities=11%  Similarity=0.095  Sum_probs=43.5

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHCCcc--cchh---cccccCCCCeeEEEecCCCC
Q 012352          383 LFVVIGA-GGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVGGHA--LSLA---DLENFNPEDGMILANTTSIG  452 (465)
Q Consensus       383 ~vlV~Ga-Gg~g~ai~~~L~~~G~-~v~i~~R~~~~a~~la~~~~~~~--~~~~---~l~~~~~~~~DilInaT~~g  452 (465)
                      +|||+|+ |-+|+.++..|.+.|. +|+.+++...+...+.+.-+...  .++.   ++.+....++|+||+++...
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~~~   78 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIA   78 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCccccccccc
Confidence            5899998 5699999999999995 89998876444333221101111  1221   11111234689999998764

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.64  E-value=0.16  Score=44.47  Aligned_cols=30  Identities=27%  Similarity=0.386  Sum_probs=28.3

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEEC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANR  412 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R  412 (465)
                      -++|||+|.+|.++|..+++.|.+|.|+.+
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~   34 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDF   34 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            589999999999999999999999999984

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=87.62  E-value=0.19  Score=46.52  Aligned_cols=31  Identities=29%  Similarity=0.345  Sum_probs=28.5

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      -|+|||+|.+|..+|..+++.|.+|.|+.+.
T Consensus         7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~   37 (336)
T d2bs2a2           7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLI   37 (336)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEecC
Confidence            4999999999999999999999999999763

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=87.55  E-value=0.19  Score=45.47  Aligned_cols=36  Identities=33%  Similarity=0.461  Sum_probs=31.3

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHH-CCCeEEEEECCH
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKA-KGARVVIANRTY  414 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~-~G~~v~i~~R~~  414 (465)
                      .....|+|||+|.+|.++|..|++ .|.+|+|+.+.+
T Consensus        31 ~~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          31 YAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             HTEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence            345679999999999999999987 599999999864

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.49  E-value=0.29  Score=45.42  Aligned_cols=33  Identities=21%  Similarity=0.246  Sum_probs=29.5

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEEC
Q 012352          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR  412 (465)
Q Consensus       380 ~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R  412 (465)
                      +.|++||+|+ |-+|+.++..|.+.|.+|+.++|
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            4589999988 57999999999999999999875

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=87.24  E-value=0.17  Score=46.84  Aligned_cols=32  Identities=34%  Similarity=0.602  Sum_probs=29.4

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      ..|+|||+|.+|..++..+++.|.+|.|+.+.
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~   51 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKA   51 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            46999999999999999999999999999764

>d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Escherichia coli [TaxId: 562]

Probab=87.17  E-value=2.5  Score=38.47  Aligned_cols=149  Identities=13%  Similarity=0.185  Sum_probs=91.9

Q ss_pred             CCHHHHHHHHHhhhhcCCCEEEEEecCCC----CCCchhHHHHHH---hh--CCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 012352           33 ESVDKMVVDMGKANASGADLVEIRLDGLK----NFNPRENIKTLI---KE--SPVPTLFTYRPIWEGGQYDGDENERVDV  103 (465)
Q Consensus        33 ~t~~e~~~~~~~~~~~~~D~vElRlD~l~----~~~~~~~l~~l~---~~--~~~PiI~T~R~~~eGG~~~~~~~~~~~~  103 (465)
                      .+.+++++++++....|||+|.+=.-.-.    ..+..+++.++.   +.  ...++++.+-|.            |.++
T Consensus        35 ~~~~~a~~~a~~mi~~GAdiIDIGgeSTrPga~~vs~eeE~~Rl~pvi~~l~~~~~~~iSIDT~------------~~eV  102 (282)
T d1ajza_          35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWISVDTS------------KPEV  102 (282)
T ss_dssp             SHHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC------------CHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCccccccccCCcHHHHHHHHHHHHHHHhhcccceEEEEec------------ChHH
Confidence            35678899999988999999998766543    223344444432   11  123445566642            2457


Q ss_pred             HHHHHHhCCcEE-EEeeccccchhHHHHhcCCCCcEEEEEeccC-----CCCCC--------HHHHHHHHHHHHHcCCCE
Q 012352          104 LRLAMELGADYI-DVELQVAREFNDSIRGKKPEKCKVIVSSHNY-----QYTPS--------VEDLSNLVARIQASGADI  169 (465)
Q Consensus       104 l~~~~~~~~~~i-DiEl~~~~~~~~~l~~~~~~~~~iI~S~H~f-----~~tps--------~~el~~~~~~~~~~gadi  169 (465)
                      .+.|++.|+++| ||.-...++..+.+..   .+..+|+.|+.-     +..|.        .+.+.+.++.+.+.|-+-
T Consensus       103 a~~al~~Ga~iINDvsg~~~~~~~~~va~---~~~~~vlmh~~g~p~~~~~~~~y~dv~~~v~~~~~~~~~~~~~~GI~~  179 (282)
T d1ajza_         103 IRESAKVGAHIINDIRSLSEPGALEAAAE---TGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAK  179 (282)
T ss_dssp             HHHHHHTTCCEECCTTTTCSTTHHHHHHH---HTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHhcCceEEechhhcccchhHHHhhc---cCceEEEeccCCCccccccCCcccchhhhhHHHHHHHHHHHHHcCCcH
Confidence            889999999887 4443233334433332   366788876531     11121        133566677788888544


Q ss_pred             EEEEeec-----CCHHHHHHHHHHhccC---CCCE
Q 012352          170 VKFATTA-----LDITDVARVFQITVHS---QVPI  196 (465)
Q Consensus       170 vKia~~~-----~~~~D~~~ll~~~~~~---~~p~  196 (465)
                      =+|.+=|     ++.++++.+++-+...   +.|+
T Consensus       180 ~~IilDPGiGFgK~~~~n~~ll~~l~~~~~~~~Pi  214 (282)
T d1ajza_         180 EKLLLDPGFGFGKNLSHNYSLLARLAEFHHFNLPL  214 (282)
T ss_dssp             GGEEEECCTTSSCCHHHHHHHHHTGGGGGGGCSCB
T ss_pred             hhEecCCCcCcCCChhhhHHHHhhcchhhccccce
Confidence            5677665     7899999998876543   5664

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.12  E-value=1.5  Score=38.96  Aligned_cols=51  Identities=18%  Similarity=0.114  Sum_probs=37.3

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHH-HCCCeEEEEE
Q 012352          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAK-AKGARVVIAN  411 (465)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~-~~G~~v~i~~  411 (465)
                      +.|.+.+++..+..       .+.++++++++|-|.|.+|+.++..|. +.|++|+.++
T Consensus        11 g~Gv~~~~~~~~~~-------~~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vs   62 (234)
T d1b26a1          11 GRGVKVCAGLAMDV-------LGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVS   62 (234)
T ss_dssp             HHHHHHHHHHHHHH-------TTCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEE
T ss_pred             hHHHHHHHHHHHHH-------cCCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEee
Confidence            56666665544332       135789999999999999999999996 4699766443

>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=87.10  E-value=4.2  Score=35.84  Aligned_cols=144  Identities=20%  Similarity=0.115  Sum_probs=87.6

Q ss_pred             cCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 012352           32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG  111 (465)
Q Consensus        32 ~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~~l~~~~~~~  111 (465)
                      ..|.+++.+-++++.+.+.-.+=+.-.+.      ..++.+++..+..+ .|+=....|..   +.+.+..-.+.+++.|
T Consensus        32 ~~T~~~i~~lc~~A~~~~~~avcV~p~~v------~~a~~~l~~s~v~v-~tVigFP~G~~---~~~~k~~E~~~Ai~~G  101 (234)
T d1n7ka_          32 RATEEDVRNLVREASDYGFRCAVLTPVYT------VKISGLAEKLGVKL-CSVIGFPLGQA---PLEVKLVEAQTVLEAG  101 (234)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEEECHHHH------HHHHHHHHHHTCCE-EEEESTTTCCS---CHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhCCeEEEECcHhH------HHHHHHhhcCCCce-EEEEecCCCCC---cHHHHHHHHHHHHHcC
Confidence            44567777777776666544443321111      13444444445554 46657777664   6678888889999999


Q ss_pred             CcEEEEeeccccc------hhHHHH---hcCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEEee----cCC
Q 012352          112 ADYIDVELQVARE------FNDSIR---GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATT----ALD  178 (465)
Q Consensus       112 ~~~iDiEl~~~~~------~~~~l~---~~~~~~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKia~~----~~~  178 (465)
                      ++-||+=++....      .+.++.   .....-.|+|+--...    +.+++.+..+-+.+.|||.+|-.+=    ..+
T Consensus       102 AdEID~Vin~~~~~~~~~~ev~~~~~~~~~~g~~lKVIlEt~~L----~~~~i~~a~~~a~~aGadFVKTSTG~~~~gat  177 (234)
T d1n7ka_         102 ATELDVVPHLSLGPEAVYREVSGIVKLAKSYGAVVKVILEAPLW----DDKTLSLLVDSSRRAGADIVKTSTGVYTKGGD  177 (234)
T ss_dssp             CCEEEECCCGGGCHHHHHHHHHHHHHHHHHTTCEEEEECCGGGS----CHHHHHHHHHHHHHTTCSEEESCCSSSCCCCS
T ss_pred             CCeEEEEechhhhhhhhHHHHHHHHHHHhccCceEEEEEecccc----chHHHHHHHHHHHHhhhhheeecccccCCCCC
Confidence            9999986554311      111121   1222357888864322    5678888888888999999996432    235


Q ss_pred             HHHHHHHHHHh
Q 012352          179 ITDVARVFQIT  189 (465)
Q Consensus       179 ~~D~~~ll~~~  189 (465)
                      ++++..+++..
T Consensus       178 ~~~~~~l~~~~  188 (234)
T d1n7ka_         178 PVTVFRLASLA  188 (234)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            67776666553

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.09  E-value=0.22  Score=47.77  Aligned_cols=32  Identities=34%  Similarity=0.448  Sum_probs=29.1

Q ss_pred             EEEEEccchhHHHHHHHHHH------CCCeEEEEECCH
Q 012352          383 LFVVIGAGGAGKALAYGAKA------KGARVVIANRTY  414 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~------~G~~v~i~~R~~  414 (465)
                      -|+|+|+|.+|.++|+.|++      .|.+|.|+.|..
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA   71 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCC
Confidence            59999999999999999997      789999999863

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.04  E-value=0.27  Score=42.35  Aligned_cols=31  Identities=35%  Similarity=0.503  Sum_probs=28.5

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      -++|||+|.+|..++..+++.|.+|.|+.+.
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            3899999999999999999999999999764

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=86.99  E-value=0.31  Score=38.17  Aligned_cols=33  Identities=27%  Similarity=0.208  Sum_probs=27.8

Q ss_pred             CcEEEEEccchhHHHHHHHHHHC---CCeEEEEECC
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAK---GARVVIANRT  413 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~---G~~v~i~~R~  413 (465)
                      .|+++|+|+|.+|-.+|..|.++   |.+|+++.|.
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~   53 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRG   53 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccc
Confidence            47999999999999988776654   7799999885

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.81  E-value=0.56  Score=39.83  Aligned_cols=38  Identities=29%  Similarity=0.330  Sum_probs=33.8

Q ss_pred             ccccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEEECC
Q 012352          376 SSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       376 ~~~l~~k~vlV~GaGg-~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      +.+++||+|+|+|-|. .|+-++..|.+.|+.|++++++
T Consensus        24 g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1          24 GNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             cCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            3579999999999985 7999999999999999999765

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.64  E-value=0.28  Score=45.37  Aligned_cols=32  Identities=25%  Similarity=0.144  Sum_probs=27.8

Q ss_pred             cEE-EEEccc-hhHHHHHHHHHHCCCeEEEEECC
Q 012352          382 KLF-VVIGAG-GAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       382 k~v-lV~GaG-g~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      |+| ||+|+. -+|+.++..|.+.|++|+.++|.
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~   34 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRR   34 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            456 999995 59999999999999999988874

>d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein TM0922, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.61  E-value=1.7  Score=37.82  Aligned_cols=73  Identities=16%  Similarity=0.259  Sum_probs=41.1

Q ss_pred             CCcEEEEE-ccc---hhHHHHHHHHHHCCCeEEEEECCHHHHH------HHHHHHCCcccchhcccccCCCCeeEEEecC
Q 012352          380 AGKLFVVI-GAG---GAGKALAYGAKAKGARVVIANRTYDRAR------ELAETVGGHALSLADLENFNPEDGMILANTT  449 (465)
Q Consensus       380 ~~k~vlV~-GaG---g~g~ai~~~L~~~G~~v~i~~R~~~~a~------~la~~~~~~~~~~~~l~~~~~~~~DilInaT  449 (465)
                      +.++++|+ |.|   |=|.++++.|.+.|++|.++-....+..      ++....+.......+. . ....+|+||++-
T Consensus        39 ~~~~vlvl~G~GNNGGDGl~~Ar~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~dlIIDal  116 (211)
T d2ax3a2          39 SDYRFLVLCGGGNNGGDGFVVARNLLGVVKDVLVVFLGKKKTPDCEYNYGLYKKFGGKVVEQFEP-S-ILNEFDVVVDAI  116 (211)
T ss_dssp             TTCEEEEEECSSHHHHHHHHHHHHHTTTSSEEEEEECCSSCCHHHHHHHHHHHHTTCCEESCCCG-G-GGGGCSEEEEES
T ss_pred             cCCcEEEEECCCCCchhHHHHHHHHHhcCCeeEEEecCccCCcHHHHHHHHHHHcCCcccccccc-c-cccCceEEEEec
Confidence            34555554 765   7888899999999998887754222111      1222222222211111 1 234578999986


Q ss_pred             -CCCCC
Q 012352          450 -SIGMQ  454 (465)
Q Consensus       450 -~~gm~  454 (465)
                       |.|..
T Consensus       117 ~G~Gl~  122 (211)
T d2ax3a2         117 FGTGLR  122 (211)
T ss_dssp             CCTTCC
T ss_pred             ccCCcc
Confidence             66654

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=85.93  E-value=0.32  Score=43.44  Aligned_cols=30  Identities=33%  Similarity=0.579  Sum_probs=28.5

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          384 FVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       384 vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      ++|||+|.+|..++..++++|.+|.++.+.
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            799999999999999999999999999875

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.88  E-value=0.055  Score=47.41  Aligned_cols=30  Identities=30%  Similarity=0.272  Sum_probs=25.3

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC------eEEEEEC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGA------RVVIANR  412 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~------~v~i~~R  412 (465)
                      +|+|||+|-+|.++|+.|++.|.      +++++.+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~   37 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYAD   37 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEES
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeeccc
Confidence            59999999999999999999985      4566553

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.60  E-value=0.36  Score=44.78  Aligned_cols=31  Identities=19%  Similarity=0.233  Sum_probs=27.8

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEEC
Q 012352          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANR  412 (465)
Q Consensus       382 k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R  412 (465)
                      |+|||+|+ |-+|++++..|.+.|.+|++++|
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            78999998 56999999999999999998864

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.53  E-value=0.58  Score=37.76  Aligned_cols=33  Identities=30%  Similarity=0.317  Sum_probs=27.2

Q ss_pred             CcEEEEEccchhHHHHHHHHH----HCCCeEEEEECC
Q 012352          381 GKLFVVIGAGGAGKALAYGAK----AKGARVVIANRT  413 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~----~~G~~v~i~~R~  413 (465)
                      .|+++|+|+|.+|-.++..|+    +.|.+|+++.+.
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~   73 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPE   73 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccc
Confidence            579999999998888887774    468899998763

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=85.07  E-value=0.095  Score=47.21  Aligned_cols=62  Identities=11%  Similarity=0.150  Sum_probs=36.3

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHCCcccchhccccc-CCCCeeEEEecCCCC
Q 012352          383 LFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENF-NPEDGMILANTTSIG  452 (465)
Q Consensus       383 ~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~~~~~~~~~~~~l~~~-~~~~~DilInaT~~g  452 (465)
                      +|||+|+ |-+|++++..|.+.|..|.+..|+..        +.....+.+.+.+. .-.++|+|||+++..
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g~~v~~~~~~~~--------~~~Dl~~~~~~~~~i~~~~~D~Vih~Aa~~   65 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVGNLIALDVHSKE--------FCGDFSNPKGVAETVRKLRPDVIVNAAAHT   65 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTSEEEEECTTCSS--------SCCCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEECCCcc--------ccCcCCCHHHHHHHHHHcCCCEEEEecccc
Confidence            5899998 67999999999988854444444321        11111112222210 012469999998754

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=84.97  E-value=0.35  Score=45.18  Aligned_cols=30  Identities=23%  Similarity=0.266  Sum_probs=28.4

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEEC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANR  412 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R  412 (465)
                      .|+|||+|-.|..+|..|++.|.+|.|+.|
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEa   33 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEM   33 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEec
Confidence            489999999999999999999999999987

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.79  E-value=0.48  Score=44.16  Aligned_cols=35  Identities=20%  Similarity=0.214  Sum_probs=30.5

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEECC
Q 012352          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       379 l~~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      -++.+|||+|+ |-+|+.++..|.+.|.+|++++|.
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~   48 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWK   48 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            35778999988 569999999999999999999764

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=84.73  E-value=0.28  Score=43.70  Aligned_cols=31  Identities=23%  Similarity=0.396  Sum_probs=28.4

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEECC
Q 012352          383 LFVVIGA-GGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       383 ~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      +|||+|+ |-+|+.++.+|.+.|++|+.++|.
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~   34 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQ   34 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeech
Confidence            5899998 779999999999999999999985

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.41  E-value=0.25  Score=45.49  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=30.3

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHC--CCeEEEEECCH
Q 012352          380 AGKLFVVIGAGGAGKALAYGAKAK--GARVVIANRTY  414 (465)
Q Consensus       380 ~~k~vlV~GaGg~g~ai~~~L~~~--G~~v~i~~R~~  414 (465)
                      .++.|+|+|+|.+|.++++.|++.  |.+|+|+.++.
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~   85 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV   85 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            356799999999999999999864  88999998863

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.34  E-value=0.32  Score=39.96  Aligned_cols=30  Identities=23%  Similarity=0.360  Sum_probs=26.5

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      +|+|+|+|.+|-.++..|++ +.+|+++.|.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~   31 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKE   31 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSS
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecc
Confidence            79999999999999999965 6799999874

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.20  E-value=0.45  Score=37.34  Aligned_cols=34  Identities=18%  Similarity=0.121  Sum_probs=28.3

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCC---CeEEEEECCH
Q 012352          381 GKLFVVIGAGGAGKALAYGAKAKG---ARVVIANRTY  414 (465)
Q Consensus       381 ~k~vlV~GaGg~g~ai~~~L~~~G---~~v~i~~R~~  414 (465)
                      .++++|+|+|.+|-.+|..|..+|   .+|+++.|..
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            479999999999999998877665   4799998743

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=84.02  E-value=0.47  Score=40.30  Aligned_cols=32  Identities=9%  Similarity=0.058  Sum_probs=28.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC--eEEEEECCH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGA--RVVIANRTY  414 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~--~v~i~~R~~  414 (465)
                      +|+|+|+|-+|-.+|..|.+.+.  +|+++.|+.
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            69999999999999999998864  899998753

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=84.02  E-value=2.9  Score=35.12  Aligned_cols=90  Identities=14%  Similarity=0.100  Sum_probs=59.4

Q ss_pred             CcEEEEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHH
Q 012352           23 PTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERV  101 (465)
Q Consensus        23 ~~~icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~  101 (465)
                      .|++||.+-..++++.++-+++. ...+|++++-.+++..+.. +.++.+++.. ..+++.. +...+      ....  
T Consensus         1 ~p~l~vAlD~~~~~~~~~~~~~~-~~~vdiikig~~~~~~~G~-~~i~~l~~~~~~~~i~~d-~k~~d------~~~~--   69 (213)
T d1q6oa_           1 LPMLQVALDNQTMDSAYETTRLI-AEEVDIIEVGTILCVGEGV-RAVRDLKALYPHKIVLAD-AKIAD------AGKI--   69 (213)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHH-GGGCSEEEECHHHHHHHCT-HHHHHHHHHCTTSEEEEE-EEECS------CHHH--
T ss_pred             CCcEEEEecCCCHHHHHHHHHhc-CCCccEEEeCeeccccCCH-HHHHHHHHhcccccceeE-Eeecc------chHH--
Confidence            48999999999999999988875 5679999999987754333 3566666655 4555544 32212      2222  


Q ss_pred             HHHHHHHHhCCcEEEEeeccccc
Q 012352          102 DVLRLAMELGADYIDVELQVARE  124 (465)
Q Consensus       102 ~~l~~~~~~~~~~iDiEl~~~~~  124 (465)
                       ..+.+.+.|+|++-+=.....+
T Consensus        70 -~~~~~~~~gad~vtvh~~~g~~   91 (213)
T d1q6oa_          70 -LSRMCFEANADWVTVICCADIN   91 (213)
T ss_dssp             -HHHHHHHTTCSEEEEETTSCHH
T ss_pred             -HHHHHHHcCCCEEEEeccCCch
Confidence             2234456789998886554444

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=83.81  E-value=0.29  Score=44.65  Aligned_cols=31  Identities=16%  Similarity=0.293  Sum_probs=26.3

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEE
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIAN  411 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~  411 (465)
                      .|+|||+|+ |-+|+.++.+|.+.|..+++..
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~   33 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLR   33 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEec
Confidence            478999998 5799999999999999666553

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=83.78  E-value=0.46  Score=41.95  Aligned_cols=71  Identities=24%  Similarity=0.162  Sum_probs=47.7

Q ss_pred             cCC-cEEEEEccchhHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHCCcccc--hhcccccCCCCeeEEEecC
Q 012352          379 LAG-KLFVVIGAGGAGKALAYGAKAK------GARVVIANRTYDRARELAETVGGHALS--LADLENFNPEDGMILANTT  449 (465)
Q Consensus       379 l~~-k~vlV~GaGg~g~ai~~~L~~~------G~~v~i~~R~~~~a~~la~~~~~~~~~--~~~l~~~~~~~~DilInaT  449 (465)
                      +++ |+|.|+|-|--|+|=+..|.+.      |.+|+|--|...+..+.|+.-+....+  +-++.+ ...++|+|...+
T Consensus        41 ~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~E-Av~~ADiVmiLl  119 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWE-TISGSDLVLLLI  119 (226)
T ss_dssp             TTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHH-HHHTCSEEEECS
T ss_pred             hcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHH-HHhhCCEEEEec
Confidence            456 8999999999999999999984      467888888766666666655533211  111122 234577777776


Q ss_pred             C
Q 012352          450 S  450 (465)
Q Consensus       450 ~  450 (465)
                      |
T Consensus       120 P  120 (226)
T d1qmga2         120 S  120 (226)
T ss_dssp             C
T ss_pred             c
Confidence            6

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.61  E-value=0.64  Score=35.13  Aligned_cols=32  Identities=19%  Similarity=0.335  Sum_probs=28.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      +|||+|+||--.|+++.|.+...+++++-=|+
T Consensus         2 kVLviGsGgREHAia~~l~~s~~~v~~~pGN~   33 (90)
T d1vkza2           2 RVHILGSGGREHAIGWAFAKQGYEVHFYPGNA   33 (90)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCeEEEecCCc
Confidence            69999999999999999998877899885454

>d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Bacillus anthracis [TaxId: 1392]

Probab=83.56  E-value=3.4  Score=37.32  Aligned_cols=145  Identities=16%  Similarity=0.214  Sum_probs=87.3

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCC----CCCchhHHHHHH---hh--CCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 012352           34 SVDKMVVDMGKANASGADLVEIRLDGLK----NFNPRENIKTLI---KE--SPVPTLFTYRPIWEGGQYDGDENERVDVL  104 (465)
Q Consensus        34 t~~e~~~~~~~~~~~~~D~vElRlD~l~----~~~~~~~l~~l~---~~--~~~PiI~T~R~~~eGG~~~~~~~~~~~~l  104 (465)
                      +.++++++++.....|||+|++=.-.-.    ..++.++++++.   +.  ...++++.+-|.            +.++.
T Consensus        40 ~~~~a~~~a~~~i~~GAdiIDIGaeSTrPg~~~is~~eE~~rl~p~i~~~~~~~~~~iSIDT~------------~~~Va  107 (273)
T d1tx2a_          40 EVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEVKLPISIDTY------------KAEVA  107 (273)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHSCSCEEEECS------------CHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEeeceeccccccccCHHHHHHhhchhHHhhhccceEEEehHHh------------hHHHH
Confidence            5677889999988999999998766543    233444444332   11  112334465542            34688


Q ss_pred             HHHHHhCCcEEE-Ee-eccccchhHHHHhcCCCCcEEEEEeccCCCCCCH--------HHHHHHHHHHHHcCCCEEEEEe
Q 012352          105 RLAMELGADYID-VE-LQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSV--------EDLSNLVARIQASGADIVKFAT  174 (465)
Q Consensus       105 ~~~~~~~~~~iD-iE-l~~~~~~~~~l~~~~~~~~~iI~S~H~f~~tps~--------~el~~~~~~~~~~gadivKia~  174 (465)
                      +.|++.|+++|- |- ...+.+..+.+..   .+..+|+. |. .++|..        ..+.+.++.+.+.|-+--+|..
T Consensus       108 ~~al~~G~~iINDvsg~~~D~~m~~~~~~---~~~~~vlm-H~-~~~~~~~~~~~~~~~~~~~~i~~~~~~GI~~~~Iii  182 (273)
T d1tx2a_         108 KQAIEAGAHIINDIWGAKAEPKIAEVAAH---YDVPIILM-HN-RDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIIL  182 (273)
T ss_dssp             HHHHHHTCCEEEETTTTSSCTHHHHHHHH---HTCCEEEE-CC-CSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             HHHHHcCCeEEeccccccchhHHHHHHHh---hccccccc-cc-ccccccccccchhhhhHHHHHHHHHHcCCChheEec
Confidence            899999998763 43 2223333333322   34556664 54 344432        2345667778888876667777


Q ss_pred             ec-----CCHHHHHHHHHHhcc---CCCC
Q 012352          175 TA-----LDITDVARVFQITVH---SQVP  195 (465)
Q Consensus       175 ~~-----~~~~D~~~ll~~~~~---~~~p  195 (465)
                      =|     ++.++++.|++-+..   .+.|
T Consensus       183 DPGiGFgK~~~~n~~ll~~i~~l~~~g~P  211 (273)
T d1tx2a_         183 DPGIGFAKTPEQNLEAMRNLEQLNVLGYP  211 (273)
T ss_dssp             ECCTTSSCCHHHHHHHHHTGGGGGGGCSC
T ss_pred             CccCCccchHHHHHHHHhhhcccccCCCc
Confidence            66     788999988886543   3566

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=83.56  E-value=0.59  Score=39.91  Aligned_cols=71  Identities=20%  Similarity=0.163  Sum_probs=42.9

Q ss_pred             EEEEEccchhHHHHHHHHHHCC-CeEEEEEC-CHHHHHHHHHHHCCcc-cchhc---ccc----------cCCCCeeEEE
Q 012352          383 LFVVIGAGGAGKALAYGAKAKG-ARVVIANR-TYDRARELAETVGGHA-LSLAD---LEN----------FNPEDGMILA  446 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G-~~v~i~~R-~~~~a~~la~~~~~~~-~~~~~---l~~----------~~~~~~DilI  446 (465)
                      +|.|.|.|-+||.+++++.+.+ .+|+-+|. ++.............. ..++.   ..+          +...++|+||
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi   82 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence            6889999999999999999876 47666654 4333333333333211 11111   000          0123589999


Q ss_pred             ecCCCCC
Q 012352          447 NTTSIGM  453 (465)
Q Consensus       447 naT~~gm  453 (465)
                      .|||.+.
T Consensus        83 ecTG~f~   89 (178)
T d1b7go1          83 DTTPNGV   89 (178)
T ss_dssp             ECCSTTH
T ss_pred             ECCCCcC
Confidence            9999863

>d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Staphylococcus aureus [TaxId: 1280]

Probab=83.37  E-value=1.3  Score=40.14  Aligned_cols=107  Identities=22%  Similarity=0.297  Sum_probs=64.8

Q ss_pred             EEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEeecc----------ccch---hHHHHhcCCCCcEEEEEeccCCC
Q 012352           82 FTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQV----------AREF---NDSIRGKKPEKCKVIVSSHNYQY  148 (465)
Q Consensus        82 ~T~R~~~eGG~~~~~~~~~~~~l~~~~~~~~~~iDiEl~~----------~~~~---~~~l~~~~~~~~~iI~S~H~f~~  148 (465)
                      +|=-|..+||.+. +.+.-++..+..++.|+|+|||=-..          .+++   ...+...+  ..++++|.=.+  
T Consensus        11 ~TpDSFsdgg~~~-~~~~a~~~~~~m~~~GAdiIDIGaeSTrPga~~is~~eE~~Rl~pvi~~l~--~~~~~iSIDT~--   85 (264)
T d1ad1a_          11 VTPDSFSDGGKFN-NVESAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEEELNRVLPVVEAIV--GFDVKISVDTF--   85 (264)
T ss_dssp             CCGGGCSSTTTTC-SHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHT--TSSSEEEEECS--
T ss_pred             CCCCCCCCCCcCC-CHHHHHHHHHHHHHCCCCEEEECCccCCCCCCcCCHHHHHHhhhhHhhhhc--ccCcccchhhh--
Confidence            3556778999875 44556666777788899999993322          1221   11122222  23567786644  


Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEEEEecC
Q 012352          149 TPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMG  202 (465)
Q Consensus       149 tps~~el~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG  202 (465)
                        .    .+..+++.+.|+||+==+..-....   +++++....+.|+|.|-|+
T Consensus        86 --~----~eVa~~al~~Ga~iINDVs~g~~d~---~~~~~va~~~~~~ilmH~~  130 (264)
T d1ad1a_          86 --R----SEVAEACLKLGVDIINDQWAGLYDH---RMFQVVAKYDAEIVLMHNG  130 (264)
T ss_dssp             --C----HHHHHHHHHTTCCEEEETTTTSSCT---HHHHHHHHTTCEEEEECCC
T ss_pred             --h----HHHHHHHHhcCCcEeeccccccccc---cHHHHHhhcCcceeeeeec
Confidence              2    3456667789999887443222112   3466666678899988764

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=83.25  E-value=0.47  Score=37.96  Aligned_cols=38  Identities=18%  Similarity=0.139  Sum_probs=32.8

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECCH
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~  414 (465)
                      .-+++|+|+|+|.|..|--.|..|.+...+|+++-|..
T Consensus        23 ~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   60 (126)
T d1trba2          23 FFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD   60 (126)
T ss_dssp             GGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             HHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecc
Confidence            34689999999999999999999988777999998754

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=83.23  E-value=0.35  Score=44.36  Aligned_cols=33  Identities=24%  Similarity=0.249  Sum_probs=28.6

Q ss_pred             cEEEEEccchhHHHHHHHHH-----HCCCeEEEEECCH
Q 012352          382 KLFVVIGAGGAGKALAYGAK-----AKGARVVIANRTY  414 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~-----~~G~~v~i~~R~~  414 (465)
                      --|+|+|+|.+|.++|..|+     ..|.+|+|+.|.+
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~   45 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   45 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence            36999999999999999996     4689999999864

>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.54  E-value=6.8  Score=33.47  Aligned_cols=153  Identities=12%  Similarity=0.082  Sum_probs=91.7

Q ss_pred             cEEEEeeccCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 012352           24 TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDV  103 (465)
Q Consensus        24 ~~icv~l~~~t~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~~  103 (465)
                      .+|||.+-..+.+++++-+++. ...++++|+=.+++..... +.++.+.+..+.|++.=.. ..+     ...-.+ +.
T Consensus         3 ~ki~lAlD~~~~~~a~~l~~~~-~~~v~~iKig~~l~~~~G~-~~v~~l~~~~~~~i~~D~K-~~D-----Ig~t~~-~~   73 (212)
T d1km4a_           3 NRLILAMDLMNRDDALRVTGEV-REYIDTVKIGYPLVLSEGM-DIIAEFRKRFGCRIIADFA-VAD-----IPETNE-KI   73 (212)
T ss_dssp             GGEEEEECCSSHHHHHHHHHHH-TTTCSEEEEEHHHHHHHCT-HHHHHHHHHHCCEEEEEEE-ECS-----CHHHHH-HH
T ss_pred             CCeEEEecCCCHHHHHHHHHHh-CCCCcEEEECHHHHHhcCH-HHHHHHHHhcccceehhhh-hhc-----cccHHH-Hh
Confidence            3589999999999999988875 5568999999998864333 3577776666778765433 223     222222 33


Q ss_pred             HHHHHHhCCcEEEEeeccccchhHHHHh-cCCCCcEEEEEeccCCCCCCH----HH-HHHHHHHHHHcCCCEEEEEeecC
Q 012352          104 LRLAMELGADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYTPSV----ED-LSNLVARIQASGADIVKFATTAL  177 (465)
Q Consensus       104 l~~~~~~~~~~iDiEl~~~~~~~~~l~~-~~~~~~~iI~S~H~f~~tps~----~e-l~~~~~~~~~~gadivKia~~~~  177 (465)
                      .+.+.+.|+|++-|=-....+-++.... .+..+.++++--+..  .++.    +. ..+..+...+.|.+  -+++...
T Consensus        74 ~~~~~~~gad~~TVh~~~g~~~i~~~~~~a~~~~~~~~~l~~~s--~~~~~~~~~~~~~~~~~~~~~~g~~--g~v~~~~  149 (212)
T d1km4a_          74 CRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMS--HPGAEMFIQGAADEIARMGVDLGVK--NYVGPST  149 (212)
T ss_dssp             HHHHHHTTCSEEEEESTTCHHHHHHHHHHHHHHTCEEEEECSCS--SGGGGTTHHHHHHHHHHHHHHHTCC--EEECCTT
T ss_pred             HhhhccccccEEEEeccCChHHHHHHHHHHHhcCCccccchhhc--chhhhhhhhhHHHHHHHHHHHhCCc--ccccccc
Confidence            4566678999999976665554444431 122234444422211  1111    12 33333334455644  4577778


Q ss_pred             CHHHHHHHHHHh
Q 012352          178 DITDVARVFQIT  189 (465)
Q Consensus       178 ~~~D~~~ll~~~  189 (465)
                      ++++..++-+..
T Consensus       150 ~~~~i~~ir~~~  161 (212)
T d1km4a_         150 RPERLSRLREII  161 (212)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHhhhhhcc
Confidence            888887665554

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.43  E-value=2.9  Score=34.53  Aligned_cols=34  Identities=29%  Similarity=0.473  Sum_probs=30.9

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEEC
Q 012352          379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR  412 (465)
Q Consensus       379 l~~k~vlV~GaG-g~g~ai~~~L~~~G~~v~i~~R  412 (465)
                      ++|++++++|-| .++++.+..|..+|++++++.-
T Consensus         2 l~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P   36 (163)
T d1pvva2           2 IKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATP   36 (163)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecc
Confidence            678999999997 7999999999999999999974

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=82.34  E-value=0.62  Score=42.33  Aligned_cols=30  Identities=23%  Similarity=0.377  Sum_probs=26.7

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEEC
Q 012352          383 LFVVIGA-GGAGKALAYGAKAKGARVVIANR  412 (465)
Q Consensus       383 ~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R  412 (465)
                      +|||+|+ |-+|+.++..|.+.|++|+.++|
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            6999998 56999999999999999998864

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=81.84  E-value=0.54  Score=43.41  Aligned_cols=30  Identities=23%  Similarity=0.330  Sum_probs=28.2

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEEC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANR  412 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R  412 (465)
                      -++|||+|-.|..+|..|++.|.+|.|+.+
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEa   35 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDI   35 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence            589999999999999999999999999975

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=81.77  E-value=0.51  Score=44.12  Aligned_cols=30  Identities=27%  Similarity=0.300  Sum_probs=28.3

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEEC
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANR  412 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R  412 (465)
                      .|+|||+|-+|..+|..|++.|.+|.|+.|
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEa   38 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEM   38 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence            599999999999999999999999999986

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=81.65  E-value=0.37  Score=44.69  Aligned_cols=31  Identities=35%  Similarity=0.445  Sum_probs=28.3

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEEC
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANR  412 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R  412 (465)
                      --|+|+|+|.+|..+|..+++.|.+|+|+.+
T Consensus         8 ~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK   38 (330)
T d1neka2           8 FDAVVIGAGGAGMRAALQISQSGQTCALLSK   38 (330)
T ss_dssp             ESCEEECCSHHHHHHHHHHHHTTCCCEEECS
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCeEEEEeC
Confidence            3599999999999999999999999999865

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.58  E-value=0.32  Score=48.82  Aligned_cols=34  Identities=18%  Similarity=0.225  Sum_probs=30.8

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEEC
Q 012352          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANR  412 (465)
Q Consensus       379 l~~k~vlV~GaGg~g~ai~~~L~~~G~-~v~i~~R  412 (465)
                      +.+.+|+|+|+||.|..++..|+..|+ +++|++.
T Consensus        23 L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~   57 (529)
T d1yova1          23 LESAHVCLINATATGTEILKNLVLPGIGSFTIIDG   57 (529)
T ss_dssp             HHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECC
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcC
Confidence            456799999999999999999999998 9999865

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=81.57  E-value=0.64  Score=37.12  Aligned_cols=37  Identities=24%  Similarity=0.309  Sum_probs=31.5

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEECC
Q 012352          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (465)
Q Consensus       377 ~~l~~k~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~  413 (465)
                      ..+++|+|+|+|.|..|---|..|++..-+|+++-|.
T Consensus        26 ~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~   62 (126)
T d1fl2a2          26 PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA   62 (126)
T ss_dssp             GGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSS
T ss_pred             hhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEecc
Confidence            4478999999999988888888898885699999764

>d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=81.30  E-value=9.6  Score=35.09  Aligned_cols=202  Identities=10%  Similarity=-0.010  Sum_probs=117.3

Q ss_pred             HHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEeecc-ccc---hh-------HHHH-hcCCC
Q 012352           68 NIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQV-ARE---FN-------DSIR-GKKPE  135 (465)
Q Consensus        68 ~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~~l~~~~~~~~~~iDiEl~~-~~~---~~-------~~l~-~~~~~  135 (465)
                      -++.++...+.|++.|+=...= |   .+.++..++......-|+|+|-=+-.. +..   +.       +.+. ..+..
T Consensus         7 G~R~~lgv~~RPLlgtiiKP~~-G---lsp~~~a~~~~~~~~GGvD~IKDDE~l~~~~~~p~~eRv~~~~~av~~a~~eT   82 (325)
T d1wdda1           7 VERDKLNKYGRPLLGCTIKPKL-G---LSAKNYGRACYECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAEAIYKSQAET   82 (325)
T ss_dssp             HHHHHHTCCSSCEEECBCSSSS-C---CCHHHHHHHHHHHHHTTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHHHHHHH
T ss_pred             ehHHhhCCCCCCeEEeecCCCC-C---CCHHHHHHHHHHHHccCCceeeCCcccCCCCCcchHHHHHHHHHHHHHHHHhh
Confidence            4555655568999999664322 2   378889999888888889987543222 111   11       1111 11223


Q ss_pred             CcEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccC---------------CCCEEEEe
Q 012352          136 KCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHS---------------QVPIIGLV  200 (465)
Q Consensus       136 ~~~iI~S~H~f~~tps~~el~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~~---------------~~p~i~~~  200 (465)
                      +.+.+.+.+..  .++.+|+.+..+.+.+.|++.+=+.+......=+..|-+.....               ..|--.|+
T Consensus        83 G~~k~y~~nit--~~~~~em~~ra~~a~e~G~~~~mi~~~~~G~~a~~~l~~~~~~~~l~ih~Hra~~ga~tr~~~~Gis  160 (325)
T d1wdda1          83 GEIKGHYLNAT--AGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMH  160 (325)
T ss_dssp             SSCCEEEEECC--CSSHHHHHHHHHHHHHHTCSEEEEEHHHHCHHHHHHHHHHHHHHTCEEEEECTTHHHHHSCSSSEEC
T ss_pred             CCceeEEeccC--CCCHHHHHHHHHHHHHcCCCEEEEecccccHHHHHHHHHhhhhcCceeecccccccccccCCCCCcc
Confidence            44455555542  34578999999999999999999988877666555554432111               33445677


Q ss_pred             cCccchhhhhhccccCCccccccccCccCCCCCCCChhhHHhhhccc-----------------ccCCCcceeeecCCCc
Q 012352          201 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFR-----------------QMGPDTKVFGIIGKPV  263 (465)
Q Consensus       201 MG~~G~~sRi~~~~~Gs~~tf~~~~~~~~sApGQ~~~~~l~~~~~~~-----------------~~~~~~~~~~~iG~pi  263 (465)
                      +.-++++.|+++-   ..+.|.+....   -+  .+-++..++.+.+                 .+....+.+-+.+-  
T Consensus       161 ~~vl~kl~RLaGa---D~ih~~~~~Gk---~~--~~~~~~~~~~~~l~~~~~~~d~~~~~~~~q~~~~~k~~~Pv~sG--  230 (325)
T d1wdda1         161 FRVLAKALRMSGG---DHIHAGTVVGK---LE--GEREMTLGFVDLLRDDFIEKDRARGIFFTQDWVSMPGVIPVASG--  230 (325)
T ss_dssp             HHHHHHHHHHHCC---SEEECCCSSSS---BC--CCHHHHHHHHHHHHCSEECCBGGGTBCSCEECTTCCCCEEEEES--
T ss_pred             HHHHHHHHHHcCC---CccccCccccC---cC--CCHHHHHHHHHHHHhhhcccccccCccccCcccCCCCeeeecCC--
Confidence            7778889999863   33444444321   01  1223333332211                 11111233444443  


Q ss_pred             cccccHHHHHHHHHHcCCCeeEec
Q 012352          264 GHSKSPILYNEAFKSVGFNGVFVH  287 (465)
Q Consensus       264 ~hS~SP~~hn~~f~~~gl~~~y~~  287 (465)
                        ..+|......++.+|-|..+..
T Consensus       231 --G~~~g~vp~~~~~~G~D~il~~  252 (325)
T d1wdda1         231 --GIHVWHMPALTEIFGDDSVLQF  252 (325)
T ss_dssp             --SCCGGGHHHHHHHHCSSSEEEC
T ss_pred             --CCCHhHHHHHHHhcCCcEEEEc
Confidence              4566667778899998877663

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=81.23  E-value=1.3  Score=37.43  Aligned_cols=71  Identities=24%  Similarity=0.263  Sum_probs=44.7

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC-eEE-EEECCHHHHHHHHHHHCCcc-c-c------hhc--------ccccCCCCee
Q 012352          382 KLFVVIGAGGAGKALAYGAKAKGA-RVV-IANRTYDRARELAETVGGHA-L-S------LAD--------LENFNPEDGM  443 (465)
Q Consensus       382 k~vlV~GaGg~g~ai~~~L~~~G~-~v~-i~~R~~~~a~~la~~~~~~~-~-~------~~~--------l~~~~~~~~D  443 (465)
                      .++.|-|.|-+||.+++++.+..- +|+ |.+.++......+.+++... . .      +.+        +.. ...++|
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vD   81 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLND-LLEKVD   81 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHH-HHTTCS
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhh-hhccCC
Confidence            478999999999999999987664 655 44555544444444444211 1 1      111        111 134799


Q ss_pred             EEEecCCCCC
Q 012352          444 ILANTTSIGM  453 (465)
Q Consensus       444 ilInaT~~gm  453 (465)
                      +||.|||...
T Consensus        82 vViEcTG~f~   91 (172)
T d2czca2          82 IIVDATPGGI   91 (172)
T ss_dssp             EEEECCSTTH
T ss_pred             EEEECCCCCC
Confidence            9999999874

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=80.80  E-value=0.4  Score=44.49  Aligned_cols=32  Identities=19%  Similarity=0.103  Sum_probs=25.8

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEEC
Q 012352          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANR  412 (465)
Q Consensus       381 ~k~vlV~Ga-Gg~g~ai~~~L~~~G~~v~i~~R  412 (465)
                      -++|||+|+ |-+|+.++..|.+.|.+|.+++|
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~   34 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL   34 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEE
Confidence            478999997 56999999999999975555443

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=80.12  E-value=0.94  Score=38.53  Aligned_cols=39  Identities=18%  Similarity=0.198  Sum_probs=33.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Q 012352          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAE  422 (465)
Q Consensus       383 ~vlV~GaGg~g~ai~~~L~~~G~~v~i~~R~~~~a~~la~  422 (465)
                      ++.|+|.|-+|..++..|+ .|++|+.++-++++.+++..
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~   40 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINN   40 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHT
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhh
Confidence            5789999999998887665 69999999999998877753

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=80.07  E-value=1.8  Score=38.48  Aligned_cols=51  Identities=29%  Similarity=0.262  Sum_probs=36.1

Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccCCcEEEEEccchhHHHHHHHHHH-CCCeEEEE
Q 012352          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKA-KGARVVIA  410 (465)
Q Consensus       354 ~~G~~~~l~~~~~~~~~~~~~~~~~l~~k~vlV~GaGg~g~ai~~~L~~-~G~~v~i~  410 (465)
                      +.|.+.+++..+....      ..++++|+|+|-|.|.+|..+++.|.+ .|++|+-+
T Consensus        11 g~Gv~~~~~~~~~~~g------~~~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~v   62 (239)
T d1gtma1          11 ARGASYTIREAAKVLG------WDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAV   62 (239)
T ss_dssp             HHHHHHHHHHHHHHTT------CSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             hHHHHHHHHHHHHHhC------CCCcCCCEEEEECCCHHHHHHHHHHHHhcCcceeec
Confidence            5666666655443211      134899999999999999999999975 58865543