Citrus Sinensis ID: 012374

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-----
Protein Sequence
MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRFSSTSDNMCKRWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFSTDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLIILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPPLDTLALR
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHccccccccccccccccccccHHHHHHcccccccccccHHHHHHHHHHcccccccccccHHHHHHHHcccccccccccccccccHHHHHHHHccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccccccccHHHHHHHHcccccEcHHHHHcccccccccccHccccccccccccccEEcccccccccHHHcccccccccccccccEEEccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccccccccHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEcc
Coil and Loop (DISEMBL)
MAMVQLCckipskeqllpipkivrqnergfkchcisltensrfsstsdnMCKRwrsiypnqdvaelpvqwkmsnitshvgsfskkastKEKLRMVRCaakssdseCQIRILESYLAKlkddsiqnssessgeieelhsrsgeinaktELDSLDAYLGKLntdakfstdqttERNLVAAQLSIsksskrgymgklkgyrelrnkdgVRSLERDLALQRTEETSNLYLIILVSIDVAVFLFEIaspirnsefgffslpllygakINELILVGEWWRLVTPMFLHSGLFHVALSCWALLtfgpqvcksygpfTFFLIYTLggisgnltsflhtpeptvggtgpVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIIsnfgpvdtwaHLGAAFTGIIYGFLtcplvqlgdassrnsqEEGITLIRQYANPCKSLIVFTIFVIILGSfifvfeppldtlalr
Flexible Loop (DISEMBL)
MAMVQLCckipskeqllpipKIVRQNERGFKCHCIsltensrfsstsDNMCKRWRSIYPNQDVAELPVQWKMSNItshvgsfskkastkeKLRMVRcaakssdsecqIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDakfstdqtternlvaaqlsisksskrgymgklkgyrelrnkdgvrslERDLALQRTEETSNLYLIILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPPLDTLALR
Low Complexity Region (SEG)
MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRFSSTSDNMCKRWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFSTDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLIILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPPLDTLALR
Disordered region (IsUnstruct)
***VQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRFSSTSDNMCKRWRSIYPNQDVAELPVQWKMSNITSHV**************************CQIRILESYLA**************************************YL**********************************************************L**TEETSNLYLIILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGD********EGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPPL******
Disordered Region (DISOPRED)
*AMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTE************************AELPVQWKMSNIT*HV**********EKLRMVR*************ILESYLAKLK*********************************DAYLGKL************************************************************ETSNLYLIILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPPLDTLALR
Disordered Region (DISEMBL)
MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRFSSTSDNMCKRWRSIYPNQDVAELPVQWKMSNITSHVG************************ECQIRILESYLAKLKD********************GEINAKTELDSLDAYLGKLNTDAKFSTDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLIILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPPLDTLALR
Disordered Region (DISPRO)
*AMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRFSST*DN*CKRWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSECQIRILESYLAKLKD**********GEIEELHSRSGEINAKTELDSLDAYLGKLNTD*K**T****ERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLIILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPPLDTLALR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRFSSTSDNMCKRWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFSTDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLIILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPPLDTLALR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	465	2.2.26 [Sep-21-2011]
P54493	507	Rhomboid protease GluP OS	yes	no	0.387	0.355	0.341	3e-23
P96617	199	Putative rhomboid proteas	no	no	0.286	0.668	0.311	3e-13
P46116	281	Rhomboid protease AarA OS	yes	no	0.359	0.594	0.297	2e-12
Q695T9	283	Rhomboid-like protease 2	N/A	no	0.361	0.593	0.303	6e-12
Q695T8	641	Rhomboid-like protease 4	N/A	no	0.326	0.237	0.3	8e-09
Q6IUY1	263	Rhomboid-like protease 3	N/A	no	0.266	0.471	0.323	3e-08
Q6GMF8	857	Inactive rhomboid protein	no	no	0.365	0.198	0.236	6e-08
Q6PIX5	856	Inactive rhomboid protein	yes	no	0.303	0.164	0.277	3e-07
B0VX73	855	Inactive rhomboid protein	yes	no	0.303	0.164	0.270	4e-07
A9L8T6	855	Inactive rhomboid protein	N/A	no	0.303	0.164	0.270	4e-07

>sp|P54493|GLUP_BACSU Rhomboid protease GluP OS=Bacillus subtilis (strain 168) GN=gluP PE=1 SV=2

 Score =  110 bits (274), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 100/193 (51%), Gaps = 13/193 (6%)

Query: 225 YLIILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSG 284
           YL I + I +  FL EI     N+E       + +GAK N LI  GEWWRL+TP+ LH G
Sbjct: 181 YLFIALQI-LMFFLLEINGGSTNTE-----TLVAFGAKENSLIAQGEWWRLLTPIVLHIG 234

Query: 285 LFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAI 344
           + H+A +  AL + G  V + YG   F LIY   GI+G++ SF+ +P P+ G +G +F  
Sbjct: 235 IAHLAFNTLALWSVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGC 294

Query: 345 IGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGF 404
           +GA L     N+ +  + +   +    I++    F +SN   +D   H+G    G+I GF
Sbjct: 295 LGALLYVALSNRKMFLRTIGTNIIVIIIINLGFGFAVSN---IDNSGHIG----GLIGGF 347

Query: 405 LTCPLVQLGDASS 417
                + L  A +
Sbjct: 348 FAAAALGLPKAGA 360

Rhomboid-type serine protease that catalyzes intramembrane proteolysis. Important for normal cell division and sporulation. May act as a glucose exporter.
Bacillus subtilis (strain 168) (taxid: 224308)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 1EC: 0EC: 5

>sp|P96617|YDCA_BACSU Putative rhomboid protease YdcA OS=Bacillus subtilis (strain 168) GN=ydcA PE=3 SV=1

 Score = 76.6 bits (187), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 5/138 (3%)

Query: 270 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 329
           GEWWRL+TP+ LH+G  H+  +  ++  F P + +  G   F L+Y   GI GN+ +++ 
Sbjct: 56  GEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGTYVT 115

Query: 330 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 387
            P     VG +G +F + G +L       +LI ++ S+ +      +  +SFI SN   +
Sbjct: 116 EPLDYVHVGASGAIFGLFGVYLFMVLFRNELIGQEHSKMIITLLAFAVLMSFINSN---I 172

Query: 388 DTWAHLGAAFTGIIYGFL 405
           +  AHL     G +  FL
Sbjct: 173 NMMAHLFGLCGGFLLSFL 190

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P46116|AARA_PROST Rhomboid protease AarA OS=Providencia stuartii GN=aarA PE=1 SV=1

 Score = 74.7 bits (182), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 88/195 (45%), Gaps = 28/195 (14%)

Query: 229 LVSIDVAVFLFEI--ASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 286
           LV +++AV+ ++I  ASP+ + E    S  +L+GA I +L L G+WWR    M LHS   
Sbjct: 27  LVLLNIAVYFYQIVFASPLDSRE----SNLILFGANIYQLSLTGDWWRYPISMMLHSNGT 82

Query: 287 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL-TSFLHTPEPT----------- 334
           H+A +C AL   G    ++YG F    IY + GI   L +++    E +           
Sbjct: 83  HLAFNCLALFVIGIGCERAYGKFKLLAIYIISGIGAALFSAYWQYYEISNSDLWTDSTVY 142

Query: 335 ----VGGTGPVFAIIGAWLIYQFQ------NKDLIAKDVSERMFQKAILSTALSFIISNF 384
               VG +G +  I  A +IY  +      N   + +   +      I   AL+ I    
Sbjct: 143 ITIGVGASGAIMGIAAASVIYLIKVVINKPNPHPVIQRRQKYQLYNLIAMIALTLINGLQ 202

Query: 385 GPVDTWAHLGAAFTG 399
             VD  AH+G A  G
Sbjct: 203 SGVDNAAHIGGAIIG 217

Rhomboid serine protease that catalyzes intramembrane proteolysis. Mediates quorum-sensing and the subsequent regulation of target genes via activation of the Tat protein export system. Catalyzes the proteolytic activation of tatA by removal of its N-terminal extension.

Providencia stuartii (taxid: 588)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q695T9|RHBL2_TOXGO Rhomboid-like protease 2 OS=Toxoplasma gondii GN=ROM2 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 95/188 (50%), Gaps = 20/188 (10%)

Query: 226 LIILVSIDVAVFLFEIASPIRNSEFGFFSLP---LLYGAKINELILVGEWWRLVTPMFLH 282
           +II+  + +AV++  +A+ +  +E      P   +++GA I ELI VGE WRL+ P+FLH
Sbjct: 62  IIIISFVQIAVYIASLAAGLAPNEI-LAPTPQTLVMFGANIPELIRVGEIWRLICPLFLH 120

Query: 283 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS--FLHTPEPTVGGTGP 340
             LFH+ ++ W  +  G  + + YG      +Y   G+  N+ S   L   +   G +  
Sbjct: 121 LNLFHILMNLWVQIRIGLTMEEKYGWKMLLAVYFGVGVLANMISAAVLFCGQMKAGASTA 180

Query: 341 VFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF---IISNFGP-VDTWAHLGAA 396
           VFA+IG     Q     LI   + +R    AI+S  +      +S+FG  +D+  H+G  
Sbjct: 181 VFALIGV----QLAELALIWHAIQDR--NSAIISVCICLFFVFVSSFGSHMDSVGHIG-- 232

Query: 397 FTGIIYGF 404
             G++ GF
Sbjct: 233 --GLVMGF 238

Serine protease involved in intramembrane proteolysis and the subsequent release of polypeptides from their membrane anchors.

Toxoplasma gondii (taxid: 5811)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q695T8|RHBL4_TOXGO Rhomboid-like protease 4 OS=Toxoplasma gondii GN=ROM4 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 8/160 (5%)

Query: 258 LYGAKINELILVGEWWRLVTPMFLHSGLFHV--ALSCWALLTFGPQVCKSYGPFTFFLIY 315
           L G + N +    E +RL T M++H G  H+   LSC   + +   +   +G     L++
Sbjct: 328 LGGLETNYIREYSETFRLFTSMYMHGGWLHILINLSCQIQILW--IIEPDWGFLRTTLLF 385

Query: 316 TLGGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS 374
            LGGISGNL S +  P   TVG +G ++A++GA + Y  +    I +     +F   ++ 
Sbjct: 386 FLGGISGNLLSAVADPCSITVGSSGSMYALLGALIPYCVEYWKSIPRPGCILVFMIVVI- 444

Query: 375 TALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGD 414
             +  +    G  D +AH+G A  GI++GF +   V   D
Sbjct: 445 --IGILTGMAGFTDNYAHMGGALGGILWGFASITTVSACD 482

Putative serine protease involved in intramembrane proteolysis and the subsequent release of polypeptides from their membrane anchors.

Toxoplasma gondii (taxid: 5811)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q6IUY1|RHBL3_TOXGO Rhomboid-like protease 3 OS=Toxoplasma gondii GN=ROM3 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 9/133 (6%)

Query: 273 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 332
           WR+VTP+FLH+ + H+ L+   +L    ++ + YG   F + Y L  I GNL S L  P 
Sbjct: 84  WRVVTPLFLHATILHLVLNLVFILHISLRLEERYGTKKFLVTYFLSAIVGNLLSMLMQPW 143

Query: 333 P-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSE---RMFQKAILSTALSFIISNFG-PV 387
             +VG +   F IIG           ++   +SE   R++   I   A+     +FG  V
Sbjct: 144 ALSVGASTAGFGIIGG----MAAEVSVVWCKLSEELKRIYSMDICILAVLIYFLSFGRTV 199

Query: 388 DTWAHLGAAFTGI 400
           DT+ HLG    G+
Sbjct: 200 DTFGHLGGFLAGV 212

Serine protease involved in intramembrane proteolysis and the subsequent release of polypeptides from their membrane anchors.

Toxoplasma gondii (taxid: 5811)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q6GMF8|RHDF1_DANRE Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 76/186 (40%), Gaps = 16/186 (8%)

Query: 271 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 330
           +++RL   +FLH+G+ H  +S    +T    + K  G     +IY L GI+GNL S +  
Sbjct: 654 QFYRLWLSLFLHAGILHCLVSVCFQMTILRDLEKLAGWLRISIIYILSGITGNLASAIFL 713

Query: 331 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 389
           P    VG  G  F I+    +   Q+  ++A+    R F K +      F       +D 
Sbjct: 714 PYRAEVGPAGSQFGILACLFVELIQSWQILAQ--PWRAFTKLLCVVLFLFAFGLLPWIDN 771

Query: 390 WAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILG 449
           +AH+    +G    F   P +  G              +  Y   C+ +I   +F+ +  
Sbjct: 772 FAHISGFISGFFLSFAFLPYISFGR-------------LDMYRKRCQIIIFLVVFLGLFA 818

Query: 450 SFIFVF 455
             + +F
Sbjct: 819 GLVVLF 824

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Danio rerio (taxid: 7955)

>sp|Q6PIX5|RHDF1_MOUSE Inactive rhomboid protein 1 OS=Mus musculus GN=Rhbdf1 PE=1 SV=2

 Score = 57.0 bits (136), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 3/144 (2%)

Query: 271 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 330
           +++RL   +FLH+G+ H  +S    +T    + K  G     +IY L GI+GNL S +  
Sbjct: 653 QFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGITGNLASAIFL 712

Query: 331 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 389
           P    VG  G  F I+    +  FQ+  ++A+    R F K +      F       +D 
Sbjct: 713 PYRAEVGPAGSQFGILACLFVELFQSWQILAR--PWRAFFKLLAVVLFLFAFGLLPWIDN 770

Query: 390 WAHLGAAFTGIIYGFLTCPLVQLG 413
           +AH+    +G+   F   P +  G
Sbjct: 771 FAHISGFVSGLFLSFAFLPYISFG 794

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Mus musculus (taxid: 10090)

>sp|B0VX73|RHDF1_CALJA Inactive rhomboid protein 1 OS=Callithrix jacchus GN=RHBDF1 PE=3 SV=1

 Score = 56.6 bits (135), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 3/144 (2%)

Query: 271 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 330
           +++RL   +FLH+G+ H  +S    +T    + K  G     +IY L G++GNL S +  
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711

Query: 331 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 389
           P    VG  G  F I+    +  FQ+  ++A+    R F K +      F       +D 
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILARPW--RAFFKLLAVVLFLFTFGLLPWIDN 769

Query: 390 WAHLGAAFTGIIYGFLTCPLVQLG 413
           +AH+    +G+   F   P +  G
Sbjct: 770 FAHISGFISGLFLSFAFLPYISFG 793

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Callithrix jacchus (taxid: 9483)

>sp|A9L8T6|RHDF1_PAPAN Inactive rhomboid protein 1 OS=Papio anubis GN=RHBDF1 PE=3 SV=1

 Score = 56.6 bits (135), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 3/144 (2%)

Query: 271 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 330
           +++RL   +FLH+G+ H  +S    +T    + K  G     +IY L G++GNL S +  
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711

Query: 331 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 389
           P    VG  G  F I+    +  FQ+  ++A+    R F K +      F       +D 
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILARPW--RAFFKLLAVVLFLFTFGLLPWIDN 769

Query: 390 WAHLGAAFTGIIYGFLTCPLVQLG 413
           +AH+    +G+   F   P +  G
Sbjct: 770 FAHISGFISGLFLSFAFLPYISFG 793

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Papio anubis (taxid: 9555)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	465
224127432	492	predicted protein [Populus trichocarpa]	0.989	0.934	0.524	1e-143
225451989	486	PREDICTED: uncharacterized protein LOC10	0.989	0.946	0.539	1e-136
296087301	523	unnamed protein product [Vitis vinifera]	0.989	0.879	0.539	1e-135
255551392	429	conserved hypothetical protein [Ricinus	0.806	0.874	0.583	1e-128
356545710	503	PREDICTED: uncharacterized protein LOC10	0.987	0.912	0.493	1e-125
356573948	468	PREDICTED: uncharacterized protein LOC10	0.920	0.914	0.491	1e-114
147826430	585	hypothetical protein VITISV_003619 [Viti	0.924	0.735	0.498	1e-110
449439033	477	PREDICTED: uncharacterized protein LOC10	0.834	0.813	0.494	1e-105
449483332	479	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.834	0.810	0.487	1e-102
15240938	434	rhomboid-related intramembrane serine pr	0.851	0.912	0.456	2e-97

>gi|224127432|ref|XP_002329276.1| predicted protein [Populus trichocarpa] gi|222870730|gb|EEF07861.1| predicted protein [Populus trichocarpa]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 258/492 (52%), Positives = 332/492 (67%), Gaps = 32/492 (6%)

Query: 1   MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRFSSTSDNMCKRWRSIYPN 60
           MA+V +C KIP K+  L I  + RQ+ERG  C C +  +   + S S ++ + W  IY  
Sbjct: 1   MAVVPICYKIPCKDHTLSIRNLARQHERGLLCACSAFAQGGSYLSISSDVQRNWPVIYTT 60

Query: 61  QDV--------------------AELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAK 100
            DV                      L  Q  M     H+    +  +++E L +  CA+K
Sbjct: 61  ADVLVKVKTRGRTNASKGTILNQGLLKFQSVMD--VPHLHKIHR--TSRENLSVACCASK 116

Query: 101 SSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLN 160
           S  +E Q+R+L+SY  KL+D+  + SS+S  E  +      +IN K EL+ L+AYL K++
Sbjct: 117 SGTNEKQLRLLDSYFGKLQDNVSEPSSDSCNERTDFLDTRVQINVKEELEYLNAYLDKVD 176

Query: 161 TDAKFS-------TDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDL 213
            DA           D+ TE N +   +S+SK S+R    +L+ +R LRN+       R  
Sbjct: 177 KDANLENNVSSTFNDEATEENPIVKPISVSKESRRDNEERLRSFRNLRNQYVESGSRRSE 236

Query: 214 ALQRTEETSNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEW 272
           AL++  ETS  YLI  L SI++AVFLFEIASP+RNSEF  FSLPLLYGAKINELILVGEW
Sbjct: 237 ALEQNYETSYFYLIGTLASINIAVFLFEIASPVRNSEFALFSLPLLYGAKINELILVGEW 296

Query: 273 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 332
           WRLVTPMFLHSG FHV L  W+LLTFGP+VC+ YG FTFFLIY LGGISGNLTSFLHTPE
Sbjct: 297 WRLVTPMFLHSGAFHVVLGSWSLLTFGPEVCRGYGSFTFFLIYVLGGISGNLTSFLHTPE 356

Query: 333 PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAH 392
           PTVGGTGPVFAIIGAWLIYQ QNKD+I+KD  +RMFQKA+++TA+SFI+S+FGP+D W H
Sbjct: 357 PTVGGTGPVFAIIGAWLIYQNQNKDVISKDDFDRMFQKAVITTAVSFILSHFGPIDDWTH 416

Query: 393 LGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFI 452
           LGA  TGI+YGF TC  +QL DASSR+ Q+EGI L++++A+PCKSLI+FTIF++ L S +
Sbjct: 417 LGAVLTGIVYGFFTCATLQLDDASSRSGQDEGIALVKRHADPCKSLIIFTIFILFLSSML 476

Query: 453 FVFEPPLDTLAL 464
           F  EPPL+T+ L
Sbjct: 477 FFVEPPLETVVL 488

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451989|ref|XP_002279924.1| PREDICTED: uncharacterized protein LOC100256693 [Vitis vinifera]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 262/486 (53%), Positives = 328/486 (67%), Gaps = 26/486 (5%)

Query: 1   MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSR-FSSTSDNMCK------- 52
           MA+V +C K+  K+Q  PI KI+RQ+E+GF   CI + E S  FSS    MC        
Sbjct: 1   MAVVPVCHKMSYKDQAYPIQKIIRQSEKGFGWDCIGIQEGSGCFSS----MCSDSTGISI 56

Query: 53  ------RWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSEC 106
                   RS+   +   EL    +MS   S + S S+ AS +E L  V  A++SS +E 
Sbjct: 57  KLKARVHNRSLLQFRHRTELHGLHRMSYTESCLRSISENASQRENLGTVWSASESSTNEK 116

Query: 107 QIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFS 166
           Q+R+L+ Y  KL ++   +S  SS +  EL  +SG+   K  L SL+ +LGK+N DA   
Sbjct: 117 QLRLLDLYFGKLHNEDDGSSLHSSDKKTELMDQSGQFKPKEGLRSLEDHLGKINKDATSE 176

Query: 167 T-------DQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTE 219
                   D+  E        SI++       GKLK Y ELRNKDG    +     Q  +
Sbjct: 177 NYLPSSPCDKIDEDKHDIEPFSITEDVNPVDEGKLKSYAELRNKDGDSGPKNSREQQPYD 236

Query: 220 ETSNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTP 278
           ETS+LYLI ILVSI++AV LFE+ASPIRNS+    SLPL+YGAKIN+LILVGEWWRLVTP
Sbjct: 237 ETSDLYLISILVSINIAVVLFELASPIRNSDLELSSLPLMYGAKINDLILVGEWWRLVTP 296

Query: 279 MFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGT 338
           MFLHSG+FHVAL CW LLTFGPQVC+ YG FTFFLIY LGGISGNLTSFLHTP+ TVGGT
Sbjct: 297 MFLHSGIFHVALGCWVLLTFGPQVCRGYGSFTFFLIYILGGISGNLTSFLHTPDLTVGGT 356

Query: 339 GPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFT 398
           GPVFAIIGAW+I+Q QNKD+IAKDVSE M+ KAI++TALS I+S+F P+D W H GAAFT
Sbjct: 357 GPVFAIIGAWVIHQIQNKDVIAKDVSESMYHKAIIATALSSILSHFCPIDDWTHFGAAFT 416

Query: 399 GIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPP 458
           GI YG+ TCP +QL   SS+  Q+EGITL+R+YA+PCKSLI+FT+FV++L   +F  EPP
Sbjct: 417 GIAYGYFTCPTIQLNHTSSKTGQKEGITLVRRYADPCKSLIIFTLFVLVLICVLFFIEPP 476

Query: 459 LDTLAL 464
           L+TL  
Sbjct: 477 LNTLVF 482

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087301|emb|CBI33675.3| unnamed protein product [Vitis vinifera]

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 262/486 (53%), Positives = 328/486 (67%), Gaps = 26/486 (5%)

Query: 1   MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSR-FSSTSDNMCK------- 52
           MA+V +C K+  K+Q  PI KI+RQ+E+GF   CI + E S  FSS    MC        
Sbjct: 38  MAVVPVCHKMSYKDQAYPIQKIIRQSEKGFGWDCIGIQEGSGCFSS----MCSDSTGISI 93

Query: 53  ------RWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSEC 106
                   RS+   +   EL    +MS   S + S S+ AS +E L  V  A++SS +E 
Sbjct: 94  KLKARVHNRSLLQFRHRTELHGLHRMSYTESCLRSISENASQRENLGTVWSASESSTNEK 153

Query: 107 QIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFS 166
           Q+R+L+ Y  KL ++   +S  SS +  EL  +SG+   K  L SL+ +LGK+N DA   
Sbjct: 154 QLRLLDLYFGKLHNEDDGSSLHSSDKKTELMDQSGQFKPKEGLRSLEDHLGKINKDATSE 213

Query: 167 T-------DQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTE 219
                   D+  E        SI++       GKLK Y ELRNKDG    +     Q  +
Sbjct: 214 NYLPSSPCDKIDEDKHDIEPFSITEDVNPVDEGKLKSYAELRNKDGDSGPKNSREQQPYD 273

Query: 220 ETSNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTP 278
           ETS+LYLI ILVSI++AV LFE+ASPIRNS+    SLPL+YGAKIN+LILVGEWWRLVTP
Sbjct: 274 ETSDLYLISILVSINIAVVLFELASPIRNSDLELSSLPLMYGAKINDLILVGEWWRLVTP 333

Query: 279 MFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGT 338
           MFLHSG+FHVAL CW LLTFGPQVC+ YG FTFFLIY LGGISGNLTSFLHTP+ TVGGT
Sbjct: 334 MFLHSGIFHVALGCWVLLTFGPQVCRGYGSFTFFLIYILGGISGNLTSFLHTPDLTVGGT 393

Query: 339 GPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFT 398
           GPVFAIIGAW+I+Q QNKD+IAKDVSE M+ KAI++TALS I+S+F P+D W H GAAFT
Sbjct: 394 GPVFAIIGAWVIHQIQNKDVIAKDVSESMYHKAIIATALSSILSHFCPIDDWTHFGAAFT 453

Query: 399 GIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPP 458
           GI YG+ TCP +QL   SS+  Q+EGITL+R+YA+PCKSLI+FT+FV++L   +F  EPP
Sbjct: 454 GIAYGYFTCPTIQLNHTSSKTGQKEGITLVRRYADPCKSLIIFTLFVLVLICVLFFIEPP 513

Query: 459 LDTLAL 464
           L+TL  
Sbjct: 514 LNTLVF 519

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551392|ref|XP_002516742.1| conserved hypothetical protein [Ricinus communis] gi|223544115|gb|EEF45640.1| conserved hypothetical protein [Ricinus communis]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 234/401 (58%), Positives = 294/401 (73%), Gaps = 26/401 (6%)

Query: 70  WKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSECQIRILESYLAKLKDDSIQNSSES 129
           W M    S +GS + K S  EK               Q+R+L+SY  KL+ D+ Q S++S
Sbjct: 32  WSMKGENSSMGSHASKTSINEK---------------QLRLLDSYFGKLQGDANQPSTDS 76

Query: 130 SGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKF-------STDQTTERNLVAAQLSI 182
           S E  +L ++S EIN   EL SL++YL KL+ D+         S D TTE   +   +S+
Sbjct: 77  SDETTKLGNKSKEINPTEELQSLNSYLDKLSKDSNLENYVSSTSDDLTTESEKL---VSV 133

Query: 183 SKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLI-ILVSIDVAVFLFEI 241
            + SKRG   K K + +LR KD  R L R  ALQ+ +ETS+LYL  ILVSI++AVFLFE+
Sbjct: 134 YEDSKRGEEEKPKSFVKLREKDANRGLRRSQALQQNDETSDLYLTSILVSINIAVFLFEL 193

Query: 242 ASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQ 301
           ASP+RNSEF  F+LPLLYGAKIN+LILVGEWWRL+TPMFLHSG+FH+AL CW+LLTFGPQ
Sbjct: 194 ASPVRNSEFELFTLPLLYGAKINDLILVGEWWRLLTPMFLHSGVFHMALGCWSLLTFGPQ 253

Query: 302 VCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAK 361
           V + YG FTF LI+ LGGISGNLTSFLHTPEPTVGGTGP+FAIIGAWL++Q QNKD+IAK
Sbjct: 254 VSRGYGSFTFVLIFILGGISGNLTSFLHTPEPTVGGTGPIFAIIGAWLVFQMQNKDVIAK 313

Query: 362 DVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQ 421
           D+SE MFQKAI+ T LSFI+S+FGP+D W HLGA  TGI+YG+ TCP +QL +ASSR+ Q
Sbjct: 314 DISESMFQKAIIITGLSFILSHFGPIDDWTHLGATLTGIVYGYFTCPTLQLDNASSRSGQ 373

Query: 422 EEGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPPLDTL 462
           +EG+  +R YAN CKSLI+F + +++L S +F  EPPLDTL
Sbjct: 374 DEGVAFVRGYANSCKSLILFAVLIVLLISLLFFIEPPLDTL 414

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545710|ref|XP_003541279.1| PREDICTED: uncharacterized protein LOC100808799 [Glycine max]

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 242/490 (49%), Positives = 321/490 (65%), Gaps = 31/490 (6%)

Query: 1   MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRFSSTSDNMCK------RW 54
           MA   +  K P K+Q LP   I+RQNE+ F   C +L  +   SS    +C+      + 
Sbjct: 1   MAAFPMFYKTPYKDQNLPTQNIMRQNEKRFMLECDNLHRS--ISSIPGQICRSCQPWNKV 58

Query: 55  RSIYPNQDVAELPVQWKM--------SNITSHVGSFSKKA------STKEKLRMVRCAAK 100
            +I    ++ E  V   +         N+T   GS S  +      S  E L  V C+A 
Sbjct: 59  NNILTKSNIKEKNVTRSILHDRCSLHKNVTKLCGSDSHLSLIQGCYSKTENLSRVWCSAS 118

Query: 101 SSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLN 160
           SS +E Q+R L+SY  KL+D++  ++ +SS ++ ++H       +KT L+SLD YLGKLN
Sbjct: 119 SSSTEKQLRSLDSYFGKLQDNAKLSTFDSSHKVIQVHHIDDHARSKTGLESLDEYLGKLN 178

Query: 161 TDAKFS------TDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLA 214
             A          +  +E NL A + S++K  +R    K   Y ++    GV      + 
Sbjct: 179 RGANQEPHVPSYVENRSEENL-APKRSLTKDIERSNFRKRNAYVDIGRLKGVHGPRSAID 237

Query: 215 LQRTEETSNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWW 273
            Q+  ETS+LYLI IL S+++AVFLFEIASPIRNS+   FS+PLLYGAKIN LI+VGEWW
Sbjct: 238 SQQHVETSSLYLIGILASVNIAVFLFEIASPIRNSDLELFSIPLLYGAKINHLIMVGEWW 297

Query: 274 RLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP 333
           RLVTPMFLH+G+FH+A+SCWALLTFGPQVCK YG FTFFLIY LGG++ N  SFLHTP+P
Sbjct: 298 RLVTPMFLHAGIFHMAVSCWALLTFGPQVCKGYGSFTFFLIYILGGVACNFISFLHTPDP 357

Query: 334 TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHL 393
           TVGGTGPVFAIIGAWL+YQ QNKD+IA D SE +F KA++ TAL FI+S+FGP+D W+H 
Sbjct: 358 TVGGTGPVFAIIGAWLMYQIQNKDVIASDASENLFHKAVIMTALIFILSHFGPIDEWSHF 417

Query: 394 GAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIF 453
           GAAF+G+ YGFLT P++QL D+SS   Q EG+ L+R+Y + CKS+ +FTIF+I+L SF+F
Sbjct: 418 GAAFSGMAYGFLTSPILQLNDSSSGTGQ-EGLKLVRKYGDSCKSVFIFTIFIIVLSSFLF 476

Query: 454 VFEPPLDTLA 463
             EPP + LA
Sbjct: 477 FMEPPPNALA 486

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573948|ref|XP_003555116.1| PREDICTED: uncharacterized protein LOC100815930 [Glycine max]

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/460 (49%), Positives = 302/460 (65%), Gaps = 32/460 (6%)

Query: 1   MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRF-SSTSDNMCKR---W-- 54
           MA   +  K P K+Q LP   ++RQNE+ F   C ++    RF SST   +C+    W  
Sbjct: 1   MAAFPMFYKTPYKDQNLPTQNVMRQNEKRFMYECDNM---KRFISSTPGQICRSSQPWNK 57

Query: 55  ------RSIYPNQDVAELPVQWKMS---NIT------SHVGSFSKKASTKEKLRMVRCAA 99
                 +S    ++V    +  + S   N+T      SH+    +  S  E L  V C+A
Sbjct: 58  VNNVLTKSNTKERNVPRSILHGRCSLHKNVTKLCGSDSHLSLIKECYSKTENLSRVWCSA 117

Query: 100 KSSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKL 159
            SS +E Q+R L+SY  KL+D++   + +SS ++ +LH    +  +KT L+SL+ YLGKL
Sbjct: 118 GSSSTEKQLRSLDSYFGKLQDNAKLRTFDSSHKVIQLHHIDRQARSKTGLESLEEYLGKL 177

Query: 160 NTDAKFS------TDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDL 213
           N +A          +  +E NL A + S+SK  +R    K   + ++R    +      +
Sbjct: 178 NHEANQEPCVPSYVENHSEENL-APKRSLSKDIERSNFRKQNAFVDIRRLKRLHDPRSAI 236

Query: 214 ALQRTEETSNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEW 272
             Q+  ETS+LYLI IL S+++AVFLFEIASPIR S+   FS+PLLYGAKIN LI+VGEW
Sbjct: 237 DSQQQVETSSLYLIGILASVNIAVFLFEIASPIRTSDLELFSIPLLYGAKINHLIMVGEW 296

Query: 273 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 332
           WRLVTPMFLH+G+FH+A+SCWALLTFGPQVCK YG FTFFLIY LGG++ N TSFLHT +
Sbjct: 297 WRLVTPMFLHAGIFHMAVSCWALLTFGPQVCKGYGSFTFFLIYILGGVACNFTSFLHTSD 356

Query: 333 PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAH 392
           PTVGGTGPVFAIIGAWL+YQ QNK +IA D SE +FQKA++ TAL FI+S+FGP+D W+H
Sbjct: 357 PTVGGTGPVFAIIGAWLMYQIQNKHVIASDASENLFQKAVIMTALIFILSHFGPIDEWSH 416

Query: 393 LGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYA 432
            GAAF+G+ YGFLT P++QL D+SS   QEEG+ L+R+YA
Sbjct: 417 FGAAFSGMAYGFLTSPILQLNDSSSGTGQEEGLKLVRKYA 456

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147826430|emb|CAN66509.1| hypothetical protein VITISV_003619 [Vitis vinifera]

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 235/471 (49%), Positives = 295/471 (62%), Gaps = 41/471 (8%)

Query: 1   MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSR-FSSTSDNMCK------- 52
           MA+V +C K+  K+Q  PI KI+RQ+E+GF   CI + E S  FSS    MC        
Sbjct: 1   MAVVPVCHKMSYKDQAYPIQKIIRQSEKGFGWDCIGIQEGSGCFSS----MCSDSTGISI 56

Query: 53  ------RWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSEC 106
                   RS+   +   EL    +MS   S + S S+ AS +E L  V  A++SS +E 
Sbjct: 57  KLKARVHNRSLLQFRHRTELHGLHRMSYTESCLRSISENASQRENLGTVWSASESSTNEK 116

Query: 107 QIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFS 166
           Q+R+L+ Y  KL ++   +S  SS +  EL  +SG+   K  L SL+ +LGK+N DA   
Sbjct: 117 QLRLLDLYFGKLHNEDDGSSLHSSDKKTELMDQSGQFKPKEGLRSLEDHLGKINKDATSE 176

Query: 167 T-------DQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTE 219
                   D+  E        SI++       GKLK Y ELRNKDG    +     Q  +
Sbjct: 177 NYLPSSPCDKIDEDKHDIEPFSITEDVNPVDEGKLKSYAELRNKDGDSGPKNSREQQPYD 236

Query: 220 ETSNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTP 278
           ETS+LYLI ILVSI++AV LFE+ASPIRNS+    SLPL+YGAKIN+LILVGEWWRLVTP
Sbjct: 237 ETSDLYLISILVSINIAVVLFELASPIRNSDLELSSLPLMYGAKINDLILVGEWWRLVTP 296

Query: 279 MFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGT 338
           MFLHSG+FHVAL CW LLTFGPQVC+ YG FTFFLIY LGGISGNLTSFLHTP+ TVGGT
Sbjct: 297 MFLHSGIFHVALGCWVLLTFGPQVCRGYGSFTFFLIYILGGISGNLTSFLHTPDLTVGGT 356

Query: 339 GPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFT 398
           GPVFAIIGAW+I+Q QNKD+IAKDVSE M+ KAI++TALS I+S+F P+D W H GAAFT
Sbjct: 357 GPVFAIIGAWVIHQIQNKDVIAKDVSESMYHKAIIATALSSILSHFCPIDDWTHFGAAFT 416

Query: 399 GIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILG 449
                  +  L  L  A+ R          R    P  + + F +++IILG
Sbjct: 417 A------SAELEALMMATGRGG--------RSLMGPLLA-VNFVVYLIILG 452

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439033|ref|XP_004137292.1| PREDICTED: uncharacterized protein LOC101206746 [Cucumis sativus]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/429 (49%), Positives = 279/429 (65%), Gaps = 41/429 (9%)

Query: 70  WKMSNITSHVGSFSKKASTKEK-----LRMVRCAA-----------------KSSDSECQ 107
           W++ +  S V + S +A    +     L  VRC+                  + S +E Q
Sbjct: 50  WEIHDNDSSVVTISTRARKSRRGLKALLHHVRCSNGLDFEHSKVSEKLSQVWECSTNEKQ 109

Query: 108 IRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKF-- 165
           +R L SY  +L+    + + +S  +++ L   +G+  AK EL  LDAY  K++ D     
Sbjct: 110 LRSLGSYFGRLQGVGDRKNLDSLKKMKVL--DTGQFKAKKELQLLDAYFQKVDKDTGLHK 167

Query: 166 ----STDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGV-RSLERDLALQRTEE 220
               S D+  E  LV    + S S  R    +L+  R ++    + +S+     LQ  EE
Sbjct: 168 HPLSSFDEQEEGKLV---FTTSPSEDRVKDDELQ-IRHVKLSGMIHKSMPNKTQLQE-EE 222

Query: 221 TSNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPM 279
             +LYLI  LVSI++AVFLFE+ASP++NSE   FSLP LYGAKINELILVGEWWRLVTPM
Sbjct: 223 VCDLYLISALVSINIAVFLFEVASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPM 282

Query: 280 FLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTG 339
           FLHSG+ HVALSCW LLTFG QVC+ YGPFTFFLIY LGG+SGNLTSFLHTP+PTVGGTG
Sbjct: 283 FLHSGVLHVALSCWTLLTFGRQVCREYGPFTFFLIYVLGGVSGNLTSFLHTPDPTVGGTG 342

Query: 340 PVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTG 399
           PVFA+IGAWL YQFQNKD++ KDVS++MF KA+++  +S I+SN GP+D W H GAAF+G
Sbjct: 343 PVFAMIGAWLSYQFQNKDVMTKDVSDKMFLKALVAAVISSILSNIGPIDEWTHTGAAFSG 402

Query: 400 IIYGFLTCPLVQLGDA----SSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVF 455
           ++YGFLT P+V++ DA    SSR  QE+GI L+R+YANPC+SL  F +F++   S +F  
Sbjct: 403 MLYGFLTSPIVEVNDASSSSSSRRGQEKGIKLVRKYANPCRSLAFFVLFIMGFISLVFFI 462

Query: 456 EPPLDTLAL 464
           +PP     L
Sbjct: 463 QPPFHHFGL 471

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483332|ref|XP_004156558.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101206746 [Cucumis sativus]

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/431 (48%), Positives = 277/431 (64%), Gaps = 43/431 (9%)

Query: 70  WKMSNITSHVGSFSKKASTKEK-----LRMVRCAA-----------------KSSDSECQ 107
           W++ +  S V + S +A    +     L  VRC+                  + S +E Q
Sbjct: 50  WEIHDNDSPVVTISTRARKSRRGLKALLHHVRCSNGLDFEHSKVSEKLSQVWECSTNEKQ 109

Query: 108 IRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKF-- 165
           +R L SY  +L+    + + +S  +++ L   +G+  AK EL  LDAY  K++ D     
Sbjct: 110 LRSLGSYFGRLQGVGDRKNLDSLKKMKVL--DTGQFKAKKELQLLDAYFQKVDKDTGLHK 167

Query: 166 ----STDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGV-RSLERDLALQRTEE 220
               S D+  E  LV    + S S       +L+  R ++    + +S+     LQ  EE
Sbjct: 168 HPLSSFDEQEEGKLV---FTTSPSEDHVKDDELQ-IRHVKLSGMIHKSMPNKTQLQE-EE 222

Query: 221 TSNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPM 279
             +LYLI  LVSI++AVFLFE+ASP++NSE   FSLP LYGAKINELILVGEWWRLVTPM
Sbjct: 223 VCDLYLISALVSINIAVFLFEVASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPM 282

Query: 280 FLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGG-T 338
           FLHSG+ HVALSCW LLTFG QVC+ YGPFTFFLIY LGG+SGNLTSFLHTP+PTVGG  
Sbjct: 283 FLHSGVLHVALSCWTLLTFGRQVCRXYGPFTFFLIYVLGGVSGNLTSFLHTPDPTVGGRX 342

Query: 339 GPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFT 398
           GPVFA+IGAWL YQFQNKD++ KDVS++MF KA+++  +S I+SN GP+D W H GAAF+
Sbjct: 343 GPVFAMIGAWLSYQFQNKDVMTKDVSDKMFLKALVAAVISSILSNIGPIDEWTHTGAAFS 402

Query: 399 GIIYGFLTCPLVQLGDA-----SSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIF 453
           G++YGFLT P+V++ DA     SSR  QE+GI L+R+YANPC+SL  F +F++   S +F
Sbjct: 403 GMLYGFLTSPIVEVNDASSSSSSSRRGQEKGIKLVRKYANPCRSLAFFVLFIMGFISLVF 462

Query: 454 VFEPPLDTLAL 464
             +PP     L
Sbjct: 463 FIQPPFHHFGL 473

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240938|ref|NP_198667.1| rhomboid-related intramembrane serine protease-like protein [Arabidopsis thaliana] gi|145334671|ref|NP_001078681.1| rhomboid-related intramembrane serine protease-like protein [Arabidopsis thaliana] gi|10176819|dbj|BAB10141.1| unnamed protein product [Arabidopsis thaliana] gi|46518449|gb|AAS99706.1| At5g38510 [Arabidopsis thaliana] gi|110741692|dbj|BAE98792.1| hypothetical protein [Arabidopsis thaliana] gi|332006944|gb|AED94327.1| rhomboid-related intramembrane serine protease-like protein [Arabidopsis thaliana] gi|332006945|gb|AED94328.1| rhomboid-related intramembrane serine protease-like protein [Arabidopsis thaliana]

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 191/418 (45%), Positives = 268/418 (64%), Gaps = 22/418 (5%)

Query: 49  NMCKRWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSECQI 108
           N  +R+ S   ++ +AE     +   + S++ S     S + +L +VR ++++  ++ ++
Sbjct: 21  NGLRRFSSGLKHRTMAEATTLGRDCRMKSYMKSIPYCRSPRRRLCLVRASSENKITKQRL 80

Query: 109 RILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFSTD 168
           ++L+SY  KL++D  + S  +  +I+    R  E+N   ELDSL AYL KL  DAK    
Sbjct: 81  KLLDSYFGKLQNDDEKPSISTGDDID----RKAELNVNEELDSLSAYLDKLQKDAK---- 132

Query: 169 QTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLI- 227
               + LV++ L + KS       KL+      N    +  + +    + E+T N Y + 
Sbjct: 133 ---SKGLVSSTLDVVKSEGGSVASKLRKTGIENNNSPFQQFDDE---DQAEDTLNFYAVS 186

Query: 228 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 287
           IL SI+V V LFE A+P+RN+  G  SLPLLYGAKIN+LIL GEWWRLVTPMFLHSG+ H
Sbjct: 187 ILASINVGVCLFEAAAPVRNNNMGLLSLPLLYGAKINDLILAGEWWRLVTPMFLHSGIPH 246

Query: 288 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGA 347
           VALS WALLTFGP+VC+ YG FTF LIY LGG+SGN  SFLHT +PTVGGTGP FA+IGA
Sbjct: 247 VALSSWALLTFGPKVCRDYGLFTFCLIYILGGVSGNFMSFLHTADPTVGGTGPAFALIGA 306

Query: 348 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTC 407
           WL+ Q QNK++I  +  E +FQKAI+ T    I+S+FGP+D W +LGA   GI+YGF TC
Sbjct: 307 WLVDQNQNKEMIKSNEYEDLFQKAIIMTGFGLILSHFGPIDDWTNLGALIAGIVYGFFTC 366

Query: 408 PLVQLGDASSRNSQEEGITLI----RQYANPCKSLIVFTIFV-IILGSFIFVFEPPLD 460
           P++QLG   S   ++EGI  +    +  A+PCKS ++FTIFV +I+ S + + + PLD
Sbjct: 367 PVLQLGSGGSE--RQEGIVTVGPEKQNSADPCKSFLLFTIFVAVIVTSLLLIGDGPLD 422

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	465
TAIR|locus:2159808	434	AT5G38510 [Arabidopsis thalian	0.851	0.912	0.456	1e-91
DICTYBASE|DDB_G0295849	489	DDB_G0295849 "rhomboid family	0.391	0.372	0.376	3.8e-21
TAIR|locus:2195067	307	RBL6 "RHOMBOID-like protein 6"	0.434	0.657	0.287	1.3e-15
UNIPROTKB|Q74DX7	279	GSU1188 "Rhomboid-related memb	0.341	0.569	0.309	3.9e-15
TIGR_CMR|GSU_1188	279	GSU_1188 "rhomboid family prot	0.341	0.569	0.309	3.9e-15
UNIPROTKB|Q81VF8	190	BAS0235 "Rhomboid family prote	0.318	0.778	0.314	1.6e-14
TIGR_CMR|BA_0249	190	BA_0249 "rhomboid family prote	0.318	0.778	0.314	1.6e-14
TAIR|locus:2032940	343	RBL10 "RHOMBOID-like protein 1	0.434	0.588	0.248	1.9e-13
UNIPROTKB|P46116	281	aarA "Rhomboid protease AarA"	0.206	0.341	0.372	4.8e-12
UNIPROTKB|Q3ADW0	236	CHY_0820 "Rhomboid family prot	0.262	0.516	0.318	5.2e-12

TAIR|locus:2159808 AT5G38510 [Arabidopsis thaliana (taxid:3702)]

 Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
 Identities = 191/418 (45%), Positives = 268/418 (64%)

Query:    49 NMCKRWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSECQI 108
             N  +R+ S   ++ +AE     +   + S++ S     S + +L +VR ++++  ++ ++
Sbjct:    21 NGLRRFSSGLKHRTMAEATTLGRDCRMKSYMKSIPYCRSPRRRLCLVRASSENKITKQRL 80

Query:   109 RILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFSTD 168
             ++L+SY  KL++D  + S  +  +I+    R  E+N   ELDSL AYL KL  DAK    
Sbjct:    81 KLLDSYFGKLQNDDEKPSISTGDDID----RKAELNVNEELDSLSAYLDKLQKDAK---- 132

Query:   169 QTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLI- 227
                 + LV++ L + KS       KL+      N    +  + +    + E+T N Y + 
Sbjct:   133 ---SKGLVSSTLDVVKSEGGSVASKLRKTGIENNNSPFQQFDDE---DQAEDTLNFYAVS 186

Query:   228 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 287
             IL SI+V V LFE A+P+RN+  G  SLPLLYGAKIN+LIL GEWWRLVTPMFLHSG+ H
Sbjct:   187 ILASINVGVCLFEAAAPVRNNNMGLLSLPLLYGAKINDLILAGEWWRLVTPMFLHSGIPH 246

Query:   288 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGA 347
             VALS WALLTFGP+VC+ YG FTF LIY LGG+SGN  SFLHT +PTVGGTGP FA+IGA
Sbjct:   247 VALSSWALLTFGPKVCRDYGLFTFCLIYILGGVSGNFMSFLHTADPTVGGTGPAFALIGA 306

Query:   348 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTC 407
             WL+ Q QNK++I  +  E +FQKAI+ T    I+S+FGP+D W +LGA   GI+YGF TC
Sbjct:   307 WLVDQNQNKEMIKSNEYEDLFQKAIIMTGFGLILSHFGPIDDWTNLGALIAGIVYGFFTC 366

Query:   408 PLVQLGDASSRNSQEEGITLI----RQYANPCKSLIVFTIFV-IILGSFIFVFEPPLD 460
             P++QLG   S   ++EGI  +    +  A+PCKS ++FTIFV +I+ S + + + PLD
Sbjct:   367 PVLQLGSGGSE--RQEGIVTVGPEKQNSADPCKSFLLFTIFVAVIVTSLLLIGDGPLD 422

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0295849 DDB_G0295849 "rhomboid family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 272 (100.8 bits), Expect = 3.8e-21, P = 3.8e-21
 Identities = 73/194 (37%), Positives = 101/194 (52%)

Query:   225 YLIILVS-IDVAVFLFEIA-----SPIR-NSEFGFFSLPLL-YGAKINELILVGEWWRLV 276
             Y II +S ID+ +F++EI       P + N  FG  S  LL  GAK + LIL GEWWR  
Sbjct:   238 YFIIAISLIDLVMFIWEIIYNGGFEPWKTNPWFGPNSYTLLDVGAKYSPLILNGEWWRFF 297

Query:   277 TPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPT-V 335
             TP+FLH G+FH  ++    L  G Q+ ++YG      IY L G++GNL S +  P    V
Sbjct:   298 TPIFLHVGIFHYLMNMVTQLRVGMQLERAYGGHRIVPIYLLCGVAGNLCSAIMLPNSVQV 357

Query:   336 GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLG 394
             G +G +F  +G  L    +N  ++AK      F   + S   SF +  F P VD +AHLG
Sbjct:   358 GASGAIFGFLGVLLTDLIRNWSVLAKPWLN--FGSLLFSIITSFAVGLFLPGVDNFAHLG 415

Query:   395 AAFTGIIYGFLTCP 408
                 GI+   +  P
Sbjct:   416 GFIAGILTAAIFLP 429

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=ISS

TAIR|locus:2195067 RBL6 "RHOMBOID-like protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 60/209 (28%), Positives = 105/209 (50%)

Query:   244 PIRNSEF-GFFSLPL-LYGAKINELILVG-EWWRLVTPMFLHSGLFHVALSCWALLTFGP 300
             P+R + F G  S  L   GA   + ++ G E WRL+T M+LH+G+ H+ ++ + ++ FG 
Sbjct:    66 PLRENPFLGPSSSTLEKLGALDWKKVVQGNEKWRLITAMWLHAGIIHLVMNMFDVIIFGI 125

Query:   301 QVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLI 359
             ++ + +G     LIY + G  G++ S L   +  +VG +G +  ++GA L     N  + 
Sbjct:   126 RLEQQFGFIRIGLIYLISGFGGSILSALFLQKSISVGASGALLGLMGAMLSELLTNWTIY 185

Query:   360 AKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRN 419
                +   +    I+  A++  I     VD +AH+G   TG   GF+     Q G    RN
Sbjct:   186 KSKLCALLSFLFII--AINLAIGLLPWVDNFAHIGGLLTGFCLGFILLMQPQSGWEEFRN 243

Query:   420 SQEEGITLIRQYANPCKSLIVFTIFVIIL 448
             S + G     +Y NPC+ ++ F   V+++
Sbjct:   244 SSQYGARARSKY-NPCQYVLFFVAAVLVV 271

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q74DX7 GSU1188 "Rhomboid-related membrane protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 203 (76.5 bits), Expect = 3.9e-15, P = 3.9e-15
 Identities = 52/168 (30%), Positives = 79/168 (47%)

Query:   238 LFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLT 297
             LF   SP RNS      L LL    +  +   G +W L++  +LH GL H+  +  AL  
Sbjct:    80 LFSALSPGRNS------LLLLGATGVVPIDRFGRFWTLLSANYLHGGLLHIFFNMMALRQ 133

Query:   298 FGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKD 357
               P V + YG +  F IYTLGG++G + S+L     T+G +  + A+IG+ L Y      
Sbjct:   134 IAPLVAREYGTWRMFSIYTLGGVAGYVVSYLAGTGYTIGASCAICALIGSLLYYGKSRGG 193

Query:   358 LIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFL 405
             L  + V + ++   +       I+     +D W H G    GII  F+
Sbjct:   194 LYGQAVFKEVWGWVVGLFLFGLIVPG---IDNWGHGGGILGGIIMAFI 238

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1188 GSU_1188 "rhomboid family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 203 (76.5 bits), Expect = 3.9e-15, P = 3.9e-15
 Identities = 52/168 (30%), Positives = 79/168 (47%)

Query:   238 LFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLT 297
             LF   SP RNS      L LL    +  +   G +W L++  +LH GL H+  +  AL  
Sbjct:    80 LFSALSPGRNS------LLLLGATGVVPIDRFGRFWTLLSANYLHGGLLHIFFNMMALRQ 133

Query:   298 FGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKD 357
               P V + YG +  F IYTLGG++G + S+L     T+G +  + A+IG+ L Y      
Sbjct:   134 IAPLVAREYGTWRMFSIYTLGGVAGYVVSYLAGTGYTIGASCAICALIGSLLYYGKSRGG 193

Query:   358 LIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFL 405
             L  + V + ++   +       I+     +D W H G    GII  F+
Sbjct:   194 LYGQAVFKEVWGWVVGLFLFGLIVPG---IDNWGHGGGILGGIIMAFI 238

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q81VF8 BAS0235 "Rhomboid family protein" [Bacillus anthracis (taxid:1392)]

 Score = 193 (73.0 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 51/162 (31%), Positives = 80/162 (49%)

Query:   252 FFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTF 311
             FF  P+   A  +E I  GEWWRL+T +F+H  L H   +   L   G  + K  G F+F
Sbjct:    30 FFLFPM---AAYHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSF 86

Query:   312 FLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQN-KDLIAKDVSERMF 368
              +I+ L GI GN+ S+L  P   +  G +G +F ++GA L   +   +    KD++    
Sbjct:    87 IIIFFLSGILGNIFSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYRSSNPKDIAIFSI 146

Query:   369 QKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLV 410
                IL    +F   +  P+   +HL    TG++ G +  PL+
Sbjct:   147 MICIL-LLFTFFNPSANPI---SHL----TGLVIGGICTPLL 180

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_0249 BA_0249 "rhomboid family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 193 (73.0 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 51/162 (31%), Positives = 80/162 (49%)

Query:   252 FFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTF 311
             FF  P+   A  +E I  GEWWRL+T +F+H  L H   +   L   G  + K  G F+F
Sbjct:    30 FFLFPM---AAYHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSF 86

Query:   312 FLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQN-KDLIAKDVSERMF 368
              +I+ L GI GN+ S+L  P   +  G +G +F ++GA L   +   +    KD++    
Sbjct:    87 IIIFFLSGILGNIFSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYRSSNPKDIAIFSI 146

Query:   369 QKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLV 410
                IL    +F   +  P+   +HL    TG++ G +  PL+
Sbjct:   147 MICIL-LLFTFFNPSANPI---SHL----TGLVIGGICTPLL 180

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2032940 RBL10 "RHOMBOID-like protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 1.9e-13, P = 1.9e-13
 Identities = 55/221 (24%), Positives = 102/221 (46%)

Query:   196 GYRELRNKDGVRSLERDLALQRTEETSNLYLIILVSIDVAVFLFEIASPIRNSEFGFFSL 255
             G   L  + G          +R       +  +L++I+V +++ +IAS  +         
Sbjct:   100 GESRLNPRGGEEGSSNPETSKRNTVNGRRWTNVLLAINVIMYIAQIASDGK--------- 150

Query:   256 PLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIY 315
              L +GAKIN LI  G+ WRL T   LH+   H+ ++C++L + GP      GP  F  +Y
Sbjct:   151 VLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTAESLGGPKRFLAVY 210

Query:   316 TLGGIS-------GNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMF 368
                 ++       G+  S+     P+VG +G +F ++G+  ++  ++K ++ +  +E + 
Sbjct:   211 LTSAVAKPILRVLGSAMSYWFNKAPSVGASGAIFGLVGSVAVFVIRHKQMV-RGGNEDLM 269

Query:   369 QKAILSTALSFIISNFGP-VDTWAHLGAAFTGIIYGFLTCP 408
             Q A +  AL+  +      +D W H+G    G    +L  P
Sbjct:   270 QIAQI-IALNMAMGLMSRRIDNWGHIGGLLGGTAMTWLLGP 309

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0031969 "chloroplast membrane" evidence=IDA

UNIPROTKB|P46116 aarA "Rhomboid protease AarA" [Providencia stuartii (taxid:588)]

 Score = 169 (64.5 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
 Identities = 38/102 (37%), Positives = 56/102 (54%)

Query:   227 IILVSIDVAVFLFEI--ASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSG 284
             + LV +++AV+ ++I  ASP+ + E       +L+GA I +L L G+WWR    M LHS 
Sbjct:    25 LTLVLLNIAVYFYQIVFASPLDSRESNL----ILFGANIYQLSLTGDWWRYPISMMLHSN 80

Query:   285 LFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS 326
               H+A +C AL   G    ++YG F    IY + GI   L S
Sbjct:    81 GTHLAFNCLALFVIGIGCERAYGKFKLLAIYIISGIGAALFS 122

GO:0008236 "serine-type peptidase activity" evidence=IMP

UNIPROTKB|Q3ADW0 CHY_0820 "Rhomboid family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 154 (59.3 bits), Expect = 5.2e-12, Sum P(3) = 5.2e-12
 Identities = 43/135 (31%), Positives = 66/135 (48%)

Query:   227 IILVSIDVAVFLFEIASPIRNSE-----FGFFSLPLLYGAK---INELILVGEWWRLVTP 278
             I+++  +V VF+F+I+ P   SE     FGF  L L  G +   ++E+I  G    L T 
Sbjct:    18 ILIILANVLVFIFQISLPRETSELFLHTFGFTPLRLTEGLRQGLLSEIIWSGV--TLFTS 75

Query:   279 MFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH---TPEPTV 335
             MFLH    H+  + WAL  FG  V +  G   F L Y L GI      ++    +    V
Sbjct:    76 MFLHGSFIHLISNMWALWLFGDNVEERMGHLKFLLFYFLSGIVAMTAHYVFNFASDIVAV 135

Query:   336 GGTGPVFAIIGAWLI 350
             G +G +  ++GA+ +
Sbjct:   136 GASGAIAGVMGAYFV 150

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	LOW CONFIDENCE prediction!
3rd Layer	3.4.21.105	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.01230069	hypothetical protein (492 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.VI.85.1	hypothetical protein (242 aa)			•				•		0.556

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	465
pfam01694	146	pfam01694, Rhomboid, Rhomboid family	5e-36
COG0705	228	COG0705, COG0705, Membrane associated serine prote	6e-25
PTZ00101	278	PTZ00101, PTZ00101, rhomboid-1 protease; Provision	2e-12
TIGR03902	154	TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CT	5e-07

>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family

 Score =  129 bits (327), Expect = 5e-36
 Identities = 48/148 (32%), Positives = 79/148 (53%), Gaps = 4/148 (2%)

Query: 266 LILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLT 325
           L+  G+ WRL+T MFLH+G  H+  +  ALL FG  + +  G   F L+Y L G++G+L 
Sbjct: 1   LLQRGQLWRLITSMFLHAGWLHLLFNMLALLFFGIPLERILGSVRFLLLYLLSGLAGSLL 60

Query: 326 SFLHTPE--PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISN 383
           S+L +P   P+VG +G +F ++GA L+   +N+ L+            +    L+ ++  
Sbjct: 61  SYLFSPASSPSVGASGAIFGLLGALLVLLPRNRILL--FNFPGALLLLLGIILLNLLLGF 118

Query: 384 FGPVDTWAHLGAAFTGIIYGFLTCPLVQ 411
              +  +AHLG    G++ GFL     Q
Sbjct: 119 LPGISNFAHLGGLIAGLLLGFLLLRRPQ 146

This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. Length = 146

>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]

 Score =  102 bits (255), Expect = 6e-25
 Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 9/195 (4%)

Query: 227 IILVSIDVAVFLFEI--ASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSG 284
           + L+ +++ VFL E+             F L  LY   +   +   + WRL+T +FLH+G
Sbjct: 21  LFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAG 80

Query: 285 LFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE---PTVGGTGPV 341
             H+  +  AL  FG  + +  G   F L Y L G+   L   L  P+   P++G +G +
Sbjct: 81  FLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAI 140

Query: 342 FAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTAL-SFIISNFGP---VDTWAHLGAAF 397
           F ++GA+ +     + L+      R     IL   L S           V   AHLG   
Sbjct: 141 FGLLGAYFLLFPFARILLLFLSLPRPALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLI 200

Query: 398 TGIIYGFLTCPLVQL 412
            G++   L    ++ 
Sbjct: 201 GGLLLAALLSRKLRK 215

Length = 228

>gnl|CDD|185445 PTZ00101, PTZ00101, rhomboid-1 protease; Provisional

 Score = 67.6 bits (165), Expect = 2e-12
 Identities = 55/194 (28%), Positives = 80/194 (41%), Gaps = 33/194 (17%)

Query: 224 LYLIILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHS 283
           +  II VSI  A FL    S           L +  GA +   I  GE  RL+ P+FLH+
Sbjct: 65  IVFIISVSIKPADFLTPSDS-----------LLVTLGANVASRIKQGEIHRLILPIFLHA 113

Query: 284 GLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-TVGGTGPVF 342
            +FH   + +  L  G  + K+YG     ++Y L GI GN+ S   T  P  VG +    
Sbjct: 114 NIFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVTYCPIKVGASTSGM 173

Query: 343 AIIG--------AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIIS---NFGPVDTWA 391
            ++G         W + + +          ER+    I  + +SF      N   +D   
Sbjct: 174 GLLGIVTSELILLWHVIRHR----------ERVVFNIIFFSLISFFYYFTFNGSNIDHVG 223

Query: 392 HLGAAFTGIIYGFL 405
           HLG   +GI  G L
Sbjct: 224 HLGGLLSGISMGIL 237

Length = 278

>gnl|CDD|234388 TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CTERM serine protease

 Score = 48.7 bits (117), Expect = 5e-07
 Identities = 36/157 (22%), Positives = 55/157 (35%), Gaps = 28/157 (17%)

Query: 265 ELILVGEWWRLVTPMFLHSGLFHVALSCWALLT----FGPQVCKSYGPFTFFLIYTLGGI 320
             IL GEWWRL+T  F+H   +H+ ++   LL     F              L+  L  +
Sbjct: 9   AAILEGEWWRLLTGHFVHLNWWHLLMNLAGLLLLWLLFERH----LRARRLLLLLLLLSL 64

Query: 321 SGNLTSFLHTPEPT--VGGTGPVFAIIGAWLIYQFQNKD---------LIAKDVSERMFQ 369
             +L   L  P     VG +G +  +     +   +            +IAK   E    
Sbjct: 65  LISLGLLLFLPSLQWYVGLSGVLHGLFAWGALRDIRYGRRSGWLLLLGVIAKLAWE---- 120

Query: 370 KAILSTALSFIISNF--GPVDTWAHLGAAFTGIIYGF 404
                   S   +     PV T AHL  A +G++   
Sbjct: 121 ---QLFGASASTAELIGAPVATEAHLAGALSGLLLAL 154

This model describes a rhomboid-like intramembrane serine protease. Its species distribution closely matches model TIGR03501, GlyGly-CTERM, which describes a protein targeting domain analogous to LPXTG and PEP-CTERM. In a number of species (Ralstonia eutropha ,R. metallidurans, R. solanacearum, Marinobacter aquaeolei, etc) with just one GlyGly-CTERM protein (i.e., a dedicated system), the rhombosortase and GlyGly-CTERM genes are adjacent. Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	465
PTZ00101	278	rhomboid-1 protease; Provisional	100.0
KOG2289	316	consensus Rhomboid family proteins [Signal transdu	99.96
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.95
COG0705	228	Membrane associated serine protease [Amino acid tr	99.92
KOG2290	652	consensus Rhomboid family proteins [Signal transdu	99.89
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	99.86
KOG2632	258	consensus Rhomboid family proteins [Function unkno	99.63
KOG2980	310	consensus Integral membrane protease of the rhombo	98.88
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	98.37
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	98.22
KOG0858	239	consensus Predicted membrane protein [Function unk	97.67
KOG2890	326	consensus Predicted membrane protein [Function unk	97.44
KOG4463	323	consensus Uncharacterized conserved protein [Funct	93.57
COG5291	313	Predicted membrane protein [Function unknown]	91.93

>PTZ00101 rhomboid-1 protease; Provisional

Probab=100.00  E-value=6.3e-32  Score=268.54  Aligned_cols=193  Identities=26%  Similarity=0.333  Sum_probs=148.5

Q ss_pred             hhhcccCcchHHH-HHHHHHHHHHHHHHhcCCCCccccchhhhhhhhchhhhhhhcCceeeeeecccccCCHHHHHHHHH
Q 012374          215 LQRTEETSNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCW  293 (465)
Q Consensus       215 ~~~~~~~~~p~vt-~Li~inv~VFil~~~~~~~~~~~~l~~~~l~~ga~~~~~i~~gq~WRL~Ts~FlH~gl~HLl~Nml  293 (465)
                      ++++++.+.+.+| .++++|+++|++............-.+....+|++.++.+.++||||++|++|+|.|+.|+++||+
T Consensus        44 er~Fp~f~i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i~~gq~WRLiT~~FlH~~~~HLl~Nm~  123 (278)
T PTZ00101         44 NLIFPHFTWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRIKQGEIHRLILPIFLHANIFHTFFNVF  123 (278)
T ss_pred             HHHcCCccHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhhhcCCCHHHHHHHHHccCHHHHHHHHH
Confidence            3478999999999 999999999998766322111001112345678888888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhchhHHHHHHHHHhhhhhhhhcccCC-CCccCchHHHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHH
Q 012374          294 ALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI  372 (465)
Q Consensus       294 ~L~~fG~~LE~~~Gs~rfl~lYllsGi~G~l~s~l~~p-~~~VGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~l~~~~i  372 (465)
                      +++.+|..+|+.+|++|++++|+++|++|++++.++.+ ..++||||++||++|++++.....|.....+  .+.....+
T Consensus       124 ~l~~~G~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~~~~~svGASgAifGLiGa~~~~lil~w~~~~~~--~~~~~~~i  201 (278)
T PTZ00101        124 FQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVTYCPIKVGASTSGMGLLGIVTSELILLWHVIRHR--ERVVFNII  201 (278)
T ss_pred             HHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHccCCcEEehhHHHHHHHHHHHHHHHHHHHhhccH--HHHHHHHH
Confidence            99999999999999999999999999999999988765 4689999999999999987766555543221  11111111


Q ss_pred             HHHHHHH--HH-hcCCchhHHHHHHHHHHHHHHHHHhhcc
Q 012374          373 LSTALSF--II-SNFGPVDTWAHLGAAFTGIIYGFLTCPL  409 (465)
Q Consensus       373 i~~~l~~--ll-~~~~~is~~aHLgG~L~G~llg~l~~~~  409 (465)
                      ++.++.+  .. ...+++|++||+||+++|+++|+++.++
T Consensus       202 ~~~li~~~l~~~~~g~~Id~~aHlGG~i~G~llg~~~~~~  241 (278)
T PTZ00101        202 FFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNSQ  241 (278)
T ss_pred             HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHhh
Confidence            1111111  11 2246799999999999999999998654

>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.96  E-value=1.1e-29  Score=254.91  Aligned_cols=235  Identities=24%  Similarity=0.326  Sum_probs=167.6

Q ss_pred             cccCcchHHH-HHHHHHHHHHHHHHhcCCCCccccchhhhhhhhchhhhhhhcCceeeeeecccccCCHHHHHHHHHHHH
Q 012374          218 TEETSNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALL  296 (465)
Q Consensus       218 ~~~~~~p~vt-~Li~inv~VFil~~~~~~~~~~~~l~~~~l~~ga~~~~~i~~gq~WRL~Ts~FlH~gl~HLl~Nml~L~  296 (465)
                      .+..+.|.+. .+..+.+..|.++..................++.+....+.++|+||++||||+|+|+.||++||+.++
T Consensus        64 ~~~~~~~~f~~~~~~~~l~~f~~~~~~~n~~~~~s~~~~~~~~~~~i~~~~~r~E~WRllTym~LHaGi~HL~~N~~~ql  143 (316)
T KOG2289|consen   64 PKCCPPPIFMLCLAIVFLGRFSFQGLRENPLLGPSSLTLEKMGGLLIYKPVHRGELWRLLTYMWLHAGIFHLLLNMLSQL  143 (316)
T ss_pred             cccCCCchhhhhhhhhhhheeeeeeeccCCccCcCCCCccccCCceecChhhhchhHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3444555454 444446666665533111110000001223455556666789999999999999999999999999999


Q ss_pred             HHHHHHHHhhchhHHHHHHHHHhhhhhhhhcccCCC-CccCchHHHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHHH
Q 012374          297 TFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE-PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST  375 (465)
Q Consensus       297 ~fG~~LE~~~Gs~rfl~lYllsGi~G~l~s~l~~p~-~~VGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~l~~~~ii~~  375 (465)
                      ++|..+|..+|.+|+.++|++||++|++++.++.+. ++|||||++|||+||++.....||..+....  .++..+++++
T Consensus       144 ~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~d~~~~sVGASggvfaLlgA~Ls~l~~Nw~~m~~~~--~~l~~ll~Ii  221 (316)
T KOG2289|consen  144 FIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLFDPNSISVGASGGVFALLGAHLSNLLTNWTIMKNKF--AALRTLLIII  221 (316)
T ss_pred             hccccHHhhcCceEEeeehhhhhhhhHHHHHHhccCCceecccHHHHHHHHHHHHHHHhhHHHhcchH--HHHHHHHHHH
Confidence            999999999999999999999999999999999986 5999999999999999999999999875332  2344455666


Q ss_pred             HHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhcccccCCcCcCCccchhhHHhhhccccchhHHHHHHHHHHHHHHHHhh
Q 012374          376 ALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVF  455 (465)
Q Consensus       376 ~l~~ll~~~~~is~~aHLgG~L~G~llg~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ll~f~i~vivl~~~lf~i  455 (465)
                      +++..++..+++++++|+||+++|..+|++..+..++.....+..... ....++..+.++.+..++.+++.+.+.+|.+
T Consensus       222 ~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~~~g~~~~~~~~~~~~~-~~~~~~~~q~~~w~~~~~~~v~~~~~~~~~i  300 (316)
T KOG2289|consen  222 FINLDLGFAPYVDNFAHIGGLLAGFLLGFVLHIGGQLGGITIGLIVLR-VFSKRLPYQLLLWIVLLVYLVAGLFASLFNI  300 (316)
T ss_pred             HHHHhhccccceeccccccccCCCcchhHHhhhccceeEEeccceeee-ccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            677778888999999999999999999999999888776554332100 0111222223445555555555554433333

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.95  E-value=1.1e-27  Score=238.29  Aligned_cols=174  Identities=18%  Similarity=0.155  Sum_probs=129.0

Q ss_pred             HH-HHHHHHHHHHHHHHhcCCCCccccchhhhhhhhchhhhhhhcCceeeeeecccccCCHHHHHHHHHHHHHHHHHHHH
Q 012374          226 LI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCK  304 (465)
Q Consensus       226 vt-~Li~inv~VFil~~~~~~~~~~~~l~~~~l~~ga~~~~~i~~gq~WRL~Ts~FlH~gl~HLl~Nml~L~~fG~~LE~  304 (465)
                      +| +++++|++||++........        ...+..........+||||++|++|+|.|+.||++||+++|.+|..+|+
T Consensus        96 ~T~~li~i~i~vf~l~~~~~~~~--------~~~~l~~~~~~~~~~q~WRl~T~~flH~~~~Hl~fNml~l~~lG~~iE~  167 (276)
T PRK10907         96 LTLGVMIACVVVFILMQILGDQT--------VMLWLAWPFDPSLKFELWRYFTHALLHFSLLHILFNLLWWWYLGGAVEK  167 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHH--------HHHHHhccccccccCCcHHHHhHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence            66 99999999999876643211        0111111112235789999999999999999999999999999999999


Q ss_pred             hhchhHHHHHHHHHhhhhhhhhcccCCCCccCchHHHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHHHHHHHhcC
Q 012374          305 SYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNF  384 (465)
Q Consensus       305 ~~Gs~rfl~lYllsGi~G~l~s~l~~p~~~VGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~l~~~~ii~~~l~~ll~~~  384 (465)
                      .+|+++++.+|+++|++|+++++++.+...+|+||+|||++|+........+.. ...++..+...+++.+++.+.-...
T Consensus       168 ~~G~~~~l~l~l~s~i~~~~~~~~~~~~~~gGaSGvVygL~g~~~~~~~~~p~~-~~~lp~~~~~f~llwl~~g~~~~~g  246 (276)
T PRK10907        168 RLGSGKLIVITLISALLSGWVQSKFSGPWFGGLSGVVYALMGYVWLRGERDPQS-GIYLPRGLIAFALLWLVAGYFDLFG  246 (276)
T ss_pred             HHChHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHhcccccc-chhhhHHHHHHHHHHHHHHHHHccC
Confidence            999999999999999999999988877788999999999999866554322221 1112222222233333333332334


Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhc
Q 012374          385 GPVDTWAHLGAAFTGIIYGFLTCP  408 (465)
Q Consensus       385 ~~is~~aHLgG~L~G~llg~l~~~  408 (465)
                      ++|+++||++|+++|+++|++..+
T Consensus       247 ~~Ian~AHlgGli~Gll~g~~~~~  270 (276)
T PRK10907        247 MSIANAAHVAGLAVGLAMAFWDTR  270 (276)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhh
Confidence            679999999999999999998754

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.92  E-value=1.7e-24  Score=209.44  Aligned_cols=188  Identities=23%  Similarity=0.390  Sum_probs=139.9

Q ss_pred             chHHH-HHHHHHHHHHHHHHhcCCCCccccchhhhhhhhchhhhhh--hc--CceeeeeecccccCCHHHHHHHHHHHHH
Q 012374          223 NLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELI--LV--GEWWRLVTPMFLHSGLFHVALSCWALLT  297 (465)
Q Consensus       223 ~p~vt-~Li~inv~VFil~~~~~~~~~~~~l~~~~l~~ga~~~~~i--~~--gq~WRL~Ts~FlH~gl~HLl~Nml~L~~  297 (465)
                      .+.++ .++++|+++|++....+....... .... ......+..+  ..  .||||++|++|+|.|+.|+++||+.+|.
T Consensus        16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~~~Hll~N~~~l~~   93 (228)
T COG0705          16 APPVTLFLILLNILVFLLELVLGWSAIFLL-TFLF-RLFGLYPLNLLGALARDQLWRLITAIFLHAGFLHLLFNMLALWV   93 (228)
T ss_pred             cchHHHHHHHHHHHHHHHHHHccchHHHHH-HHhh-hHHhhcchhhhccccccchHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            45677 999999999999876553221110 0000 0011111111  11  1999999999999999999999999999


Q ss_pred             HHHHHHHhhchhHHHHHHHHHhhhhhhhhcccCCC---CccCchHHHHHHHHHHHHHHhcchhhhhhh-hHHHHHHHHHH
Q 012374          298 FGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE---PTVGGTGPVFAIIGAWLIYQFQNKDLIAKD-VSERMFQKAIL  373 (465)
Q Consensus       298 fG~~LE~~~Gs~rfl~lYllsGi~G~l~s~l~~p~---~~VGaSGaVfGLlga~~~~~~~~~~~l~~~-~~~~l~~~~ii  373 (465)
                      +|..+|+.+|+.+|+.+|+++|+++++++..+.+.   +.+||||++||+++++....+..+...... .+..+...+.+
T Consensus        94 fg~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~~~~~~~~~~~~~~~~~~~~~~~i~~  173 (228)
T COG0705          94 FGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPALILILI  173 (228)
T ss_pred             hhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHHHHHHccccchhhhhccCchhHHHHHHH
Confidence            99999999999999999999999999998888763   699999999999999999988766655433 44444434444


Q ss_pred             HHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHhhccccc
Q 012374          374 STALSFIISNFG---PVDTWAHLGAAFTGIIYGFLTCPLVQL  412 (465)
Q Consensus       374 ~~~l~~ll~~~~---~is~~aHLgG~L~G~llg~l~~~~~~~  412 (465)
                      .....++.....   ++++.||++|+++|++++..+.++.+.
T Consensus       174 ~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~~~~~  215 (228)
T COG0705         174 WLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSRKLRK  215 (228)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            444444444333   699999999999999999998776443

>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.89  E-value=1.7e-23  Score=213.89  Aligned_cols=173  Identities=28%  Similarity=0.447  Sum_probs=142.7

Q ss_pred             cCceeeeeecccccCCHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhhhhhhcccCCC-CccCchHHHHHHHHH
Q 012374          269 VGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE-PTVGGTGPVFAIIGA  347 (465)
Q Consensus       269 ~gq~WRL~Ts~FlH~gl~HLl~Nml~L~~fG~~LE~~~Gs~rfl~lYllsGi~G~l~s~l~~p~-~~VGaSGaVfGLlga  347 (465)
                      .+|+|||+||+|+|+|+.|++..|.+++.+-+.+|+..|+.|+.++|++||+.||+++.++.|. +.||+||+-||++++
T Consensus       448 PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLASAIFlpY~~eVgPa~sQ~Gila~  527 (652)
T KOG2290|consen  448 PDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLASAIFLPYRAEVGPAGSQFGILAC  527 (652)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeecccccccchheeeeccccccCCcccccchHHH
Confidence            4699999999999999999999999999999999999999999999999999999999999985 899999999999999


Q ss_pred             HHHHHhcchhhhhhhhHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhcccccCCcCcCCccchhhHH
Q 012374          348 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITL  427 (465)
Q Consensus       348 ~~~~~~~~~~~l~~~~~~~l~~~~ii~~~l~~ll~~~~~is~~aHLgG~L~G~llg~l~~~~~~~~~~~~~~~~~~~~~~  427 (465)
                      .++...++|..+..+  ++.+.-+++.+.+. .++..|+||||||+.|++.|++.+++++|++.+++...          
T Consensus       528 l~vEl~qs~~il~~~--w~a~~~Lia~~L~L-~iGliPWiDN~aHlfG~i~GLl~s~~~~PYi~Fg~~d~----------  594 (652)
T KOG2290|consen  528 LFVELFQSWQILERP--WRAFFHLIATLLVL-CIGLIPWIDNWAHLFGTIFGLLTSIIFLPYIDFGDFDL----------  594 (652)
T ss_pred             HHHHHHhhhHhhhhH--HHHHHHHHHHHHHH-HhccccchhhHHHHHHHHHHHHHHHHhhccccccchhh----------
Confidence            999999999988763  33443333333333 33777999999999999999999999999998877432          


Q ss_pred             hhhccccchhHHHHHHHHHHHHH--HHHhhcC
Q 012374          428 IRQYANPCKSLIVFTIFVIILGS--FIFVFEP  457 (465)
Q Consensus       428 ~r~~~~~~~~ll~f~i~vivl~~--~lf~i~p  457 (465)
                         |..++..++..++|.+++..  ++|+..|
T Consensus       595 ---yrKr~~ilIs~ivf~~Lla~Lvv~fy~~~  623 (652)
T KOG2290|consen  595 ---YRKRFYILISQIVFSGLLAILVVVFYNYP  623 (652)
T ss_pred             ---hhhHHHHHHHHHHHHHHHHHHHHheeecc
Confidence               23335566666666666644  4455444

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.86  E-value=1.6e-22  Score=180.98  Aligned_cols=140  Identities=31%  Similarity=0.614  Sum_probs=106.7

Q ss_pred             hcCceeeeeecccccCCHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhhhhhhcccCCC--CccCchHHHHHHH
Q 012374          268 LVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE--PTVGGTGPVFAII  345 (465)
Q Consensus       268 ~~gq~WRL~Ts~FlH~gl~HLl~Nml~L~~fG~~LE~~~Gs~rfl~lYllsGi~G~l~s~l~~p~--~~VGaSGaVfGLl  345 (465)
                      .++||||++|+.|+|.|+.|+++|++.++.+|..+|+.+|+.++..+|++++++++++..++.+.  +.+|+||+++|++
T Consensus         2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~~~l~   81 (145)
T PF01694_consen    2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAVFGLL   81 (145)
T ss_dssp             GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHHHHHH
T ss_pred             CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccccccccCCCcccchHHH
Confidence            57899999999999999999999999999999999999999999999999999999999877654  5999999999999


Q ss_pred             HHHHHHHhcchhhhhhhhHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhcc
Q 012374          346 GAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPL  409 (465)
Q Consensus       346 ga~~~~~~~~~~~l~~~~~~~l~~~~ii~~~l~~ll~~~~~is~~aHLgG~L~G~llg~l~~~~  409 (465)
                      ++.+...+..+........  ........+.+.+.....+++++.+|++|+++|+++++.+.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~hl~G~~~G~~~~~~~~~~  143 (145)
T PF01694_consen   82 GAFLFLYPQNKKRLRFIYL--ALVVPIIVLVIILLLGFIPNISFLGHLGGFLAGLLYGFLILRR  143 (145)
T ss_dssp             HHHHHHHHCCCCCS---HC--CCCCCCCCCCHHHCTSSSSTTTHHHHHHHHHHHHHHHHHHCH-
T ss_pred             HHHHHHHhhccchhhcchH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            9999998877554331000  0000111122333333468899999999999999999998765

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG2632 consensus Rhomboid family proteins [Function unknown]

Probab=99.63  E-value=1e-15  Score=149.15  Aligned_cols=172  Identities=18%  Similarity=0.230  Sum_probs=127.0

Q ss_pred             CcchHHH-HHHHHHHHHHHHHHhcCCCCccccchhhhhhhhchhhhhhhcCceeeeeecccccCCHHHHHHHHHHHHHHH
Q 012374          221 TSNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFG  299 (465)
Q Consensus       221 ~~~p~vt-~Li~inv~VFil~~~~~~~~~~~~l~~~~l~~ga~~~~~i~~gq~WRL~Ts~FlH~gl~HLl~Nml~L~~fG  299 (465)
                      .+.|.+| +++.++.++|++....+.. .         .+ .+....+.+.|.||++||.++|.+..|+++||+.+|.+|
T Consensus        12 ~~~p~~ts~~~~~~~~i~lv~~~~~i~-~---------~~-~l~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g   80 (258)
T KOG2632|consen   12 MKIPLLTSIVVVLAILIYLVSFFPGIV-E---------VL-GLPSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLG   80 (258)
T ss_pred             ccchHHHHHHHHHHHHHHHHhccchhh-h---------Hh-cCCHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhch
Confidence            3457777 8888889999886554332 1         11 123344578899999999999999999999999999999


Q ss_pred             HHHHHhhc-hhHHHHHHHHHhhhhhhhhcccC------C----CCccCchHHHHHHHHHHHHHHhcchhhhhhhhHHHHH
Q 012374          300 PQVCKSYG-PFTFFLIYTLGGISGNLTSFLHT------P----EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMF  368 (465)
Q Consensus       300 ~~LE~~~G-s~rfl~lYllsGi~G~l~s~l~~------p----~~~VGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~l~  368 (465)
                      ...|+.+| +.+++.+..+.++..+++..+..      +    ...+|.||..||+++......+...............
T Consensus        81 ~~fE~~~G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~siP~~  160 (258)
T KOG2632|consen   81 SQFERTHGTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFSIPIV  160 (258)
T ss_pred             hHHHhhccceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccHHHHHHHHHHhhcCcccchhhcccccccHH
Confidence            99999999 88888888888888888765543      2    3579999999999999888877766443332322222


Q ss_pred             HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Q 012374          369 QKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFL  405 (465)
Q Consensus       369 ~~~ii~~~l~~ll~~~~~is~~aHLgG~L~G~llg~l  405 (465)
                      ...++.++..  ....++.|+++|++|+++|+.+++-
T Consensus       161 l~Pw~lLi~~--~~lvp~aSFlghl~GllvG~ay~~~  195 (258)
T KOG2632|consen  161 LAPWALLIAT--QILVPQASFLGHLCGLLVGYAYAFS  195 (258)
T ss_pred             HHHHHHHHHH--HHHccCchHHHHHHHHHHHHHHHHH
Confidence            2222222222  1234889999999999999999994

>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]

Probab=98.88  E-value=2e-09  Score=107.19  Aligned_cols=180  Identities=18%  Similarity=0.249  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccchhhhhhhhchhhhhhhcCceeeeeecccccCCHHHHHHHHHHHHHHHH-HHH
Q 012374          225 YLIILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGP-QVC  303 (465)
Q Consensus       225 ~vt~Li~inv~VFil~~~~~~~~~~~~l~~~~l~~ga~~~~~i~~gq~WRL~Ts~FlH~gl~HLl~Nml~L~~fG~-~LE  303 (465)
                      .+..++++|+++|.++.+...+..+.       .|- ..+. +..---|-+++|.|.|.+..|+..||+.++.++. .+-
T Consensus       117 ~v~~ll~~n~~vf~lWrv~~~~~~~~-------~~m-ls~~-~~~t~~w~i~~s~Fsh~~a~h~g~~~~~~~~y~~~a~~  187 (310)
T KOG2980|consen  117 VVFGLLIANAFVFTLWRVPQKQFTMI-------PWM-LSRN-AYKTGCWKIILSTFSHYSALHLGPNMLVLKSYLAGALK  187 (310)
T ss_pred             chhHHHHHHHHHHHHHHhcchhhhhh-------hHH-hhcc-cccccceeEEeehhcchhHhhhcHHHHHHHHHhccccc
Confidence            34499999999999886643221111       111 1111 1223446699999999999999999999998887 788


Q ss_pred             HhhchhHHHHHHHHHhhhhhhhhccc-CC----CCccCchHHHHHHHHHHHHHHhcchhhhhhhhHHHHHHH----HHHH
Q 012374          304 KSYGPFTFFLIYTLGGISGNLTSFLH-TP----EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQK----AILS  374 (465)
Q Consensus       304 ~~~Gs~rfl~lYllsGi~G~l~s~l~-~p----~~~VGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~l~~~----~ii~  374 (465)
                      ...|...+..+|+.++..|......- .+    .+.+||||+++++++.....+|.....+.+..+......    +++.
T Consensus       188 ~~~~~~~~~AlylSa~~~~~~i~~~~~v~~~~~gp~LGAsGav~ai~a~~~~lfP~~~~~i~f~~~v~~ga~~~~~~i~~  267 (310)
T KOG2980|consen  188 GSLGFSSFFALYLSAGVKGLFISVKDKVPTSWAGPSLGASGAVYAILALDCTLFPKTTLYILFVFPVPAGAGLAFKAIAA  267 (310)
T ss_pred             CCcchhhcccceeccccccceeEeeccccccccccccccchHHHHHHHHHhhcCcCcceeEEEeecccccchhHHHHHHH
Confidence            88999999999997777777665543 12    478999999999999999998876655543333222111    1111


Q ss_pred             HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhcccccC
Q 012374          375 TALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLG  413 (465)
Q Consensus       375 ~~l~~ll~~~~~is~~aHLgG~L~G~llg~l~~~~~~~~  413 (465)
                      ..+..+......-++.||++|.+.|+.++.+..+++..+
T Consensus       268 ~~~a~~~l~~~~~n~~Ah~~gsl~Gv~va~~~~~ri~kg  306 (310)
T KOG2980|consen  268 YDFAGLILGWGFFNHAAHLSGSLFGVVVATYLWARIRKG  306 (310)
T ss_pred             hhhcceeeccccchhHhhhcchHHHHHHHHHHHHHHHcC
Confidence            111111122345677899999999999999987766544

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=98.37  E-value=4e-06  Score=80.07  Aligned_cols=170  Identities=17%  Similarity=0.191  Sum_probs=99.7

Q ss_pred             chHHH-HHHHHHHHHHHHHHhcCCCCccccchhhhhhhhchhhhh-hhcCceeeeeecccccCCH-HHHHHHHHHHHHHH
Q 012374          223 NLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINEL-ILVGEWWRLVTPMFLHSGL-FHVALSCWALLTFG  299 (465)
Q Consensus       223 ~p~vt-~Li~inv~VFil~~~~~~~~~~~~l~~~~l~~ga~~~~~-i~~gq~WRL~Ts~FlH~gl-~HLl~Nml~L~~fG  299 (465)
                      .|++| ..++..+++.++....-..         +... ...++. +.+.|+||++|+.|.-++. .+.++|++.++..+
T Consensus         1 iPpVTR~~~~~~~~~s~l~~~~~~~---------~~~l-~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s   70 (197)
T PF04511_consen    1 IPPVTRYWLISTVALSLLVSFGIIS---------PYYL-YFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYS   70 (197)
T ss_pred             CChhHHHHHHHHHHHHHHHHCCCCC---------HHHe-eECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHh
Confidence            37788 7777776666665432111         1111 122333 3579999999999987655 79999999999999


Q ss_pred             HHHHHh-hch--hHHHHHHHHHhhhhhhhhcccCCC----CccCchHHHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHH
Q 012374          300 PQVCKS-YGP--FTFFLIYTLGGISGNLTSFLHTPE----PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAI  372 (465)
Q Consensus       300 ~~LE~~-~Gs--~rfl~lYllsGi~G~l~s~l~~p~----~~VGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~l~~~~i  372 (465)
                      ..+|+. ++.  ..++...+.+++.-.+++.+....    +..| .+-.+.++=.+.-..+.....+.+.++.+....-+
T Consensus        71 ~~LE~~~f~~~~ady~~~ll~~~~~i~~~~~~~~~~~~~~~~l~-~~l~~~l~Y~wsr~np~~~v~~~g~~~i~a~ylP~  149 (197)
T PF04511_consen   71 SSLEEGHFQGRSADYLWFLLFGASLILILSLLIGPYFFNIPFLG-SSLSFALTYIWSRKNPNAQVSFFGLFTIKAKYLPW  149 (197)
T ss_pred             hHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH-HHHHHHHHHHHHHhCcccceeeEEEEEEChhhHHH
Confidence            999998 332  457666666666655555543321    1111 22222333233333333333222223334444455


Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHh
Q 012374          373 LSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLT  406 (465)
Q Consensus       373 i~~~l~~ll~~~~~is~~aHLgG~L~G~llg~l~  406 (465)
                      +.+++.++...   -+...++.|+++|-++-++-
T Consensus       150 ~~~~~~~l~~~---~~~~~~l~Gi~~Ghly~fl~  180 (197)
T PF04511_consen  150 VLLAFSLLFGG---SSPIPDLLGILVGHLYYFLK  180 (197)
T ss_pred             HHHHHHHHhCC---CcHHHHHHHHHHHHHHHHHH
Confidence            55555655532   24568999999999988763

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=98.22  E-value=2.7e-07  Score=78.92  Aligned_cols=58  Identities=22%  Similarity=0.332  Sum_probs=54.6

Q ss_pred             ceeeeeecccccCCHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhhhhhhcc
Q 012374          271 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFL  328 (465)
Q Consensus       271 q~WRL~Ts~FlH~gl~HLl~Nml~L~~fG~~LE~~~Gs~rfl~lYllsGi~G~l~s~l  328 (465)
                      .+|+++|+.|++.++..+++|.+.++..|+.+|+.||++.++..+++.+++.|++..+
T Consensus         7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~   64 (99)
T PF08551_consen    7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFL   64 (99)
T ss_pred             ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHH
Confidence            7899999999999999999999999999999999999999999999999988887654

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

>KOG0858 consensus Predicted membrane protein [Function unknown]

Probab=97.67  E-value=8.1e-05  Score=72.52  Aligned_cols=168  Identities=17%  Similarity=0.165  Sum_probs=95.5

Q ss_pred             cchHHH-HHHHHHHHHHHHHHhcCCCCccccchhhhhhhhchhhhh-hhcCceeeeeecccccCC-HHHHHHHHHHHHHH
Q 012374          222 SNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINEL-ILVGEWWRLVTPMFLHSG-LFHVALSCWALLTF  298 (465)
Q Consensus       222 ~~p~vt-~Li~inv~VFil~~~~~~~~~~~~l~~~~l~~ga~~~~~-i~~gq~WRL~Ts~FlH~g-l~HLl~Nml~L~~f  298 (465)
                      .+|.+| ....+|++.-++....-..         | .+-...+++ +.+.|+||++|+.+.-+. -+|.++||++++-.
T Consensus        11 ~iPpVTR~~~~~~v~tt~~~~l~lIs---------P-~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY   80 (239)
T KOG0858|consen   11 QIPPVTRYYTTACVVTTLLVRLDLIS---------P-FQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRY   80 (239)
T ss_pred             cCChHHHHHHHHHHHHHHHHhhcccC---------c-hheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHH
Confidence            467888 7777777777665332111         1 111223333 478899999999999866 69999999999999


Q ss_pred             HHHHHHhh-c--hhHHHHHHHHHhhhhhhhhcccCCCCccCchHHHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHHH
Q 012374          299 GPQVCKSY-G--PFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILST  375 (465)
Q Consensus       299 G~~LE~~~-G--s~rfl~lYllsGi~G~l~s~l~~p~~~VGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~l~~~~ii~~  375 (465)
                      .+.||+-. .  +..|+.+.+.++++-.+.+.... ...+|-+ -++.+.=.+.-..+.....+.+.+..+....-+++.
T Consensus        81 ~~~LE~g~f~~rtadf~~mllf~~~l~~~~~~~~~-~~fLg~~-l~~~l~YvWs~~Np~~~v~F~g~~~f~a~YlPwvll  158 (239)
T KOG0858|consen   81 SSMLEEGSFRGRTADFLYMLLFGAVLLTLTGLFVY-IVFLGQS-LVFMLVYVWSKRNPDVIVSFFGLITFKAPYLPWVLL  158 (239)
T ss_pred             HHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHhhCCCceEEEEEEecCccccchHHHH
Confidence            99999864 2  36777777787777775554211 1111111 111111111111111111111222333344445556


Q ss_pred             HHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Q 012374          376 ALSFIISNFGPVDTWAHLGAAFTGIIYGFL  405 (465)
Q Consensus       376 ~l~~ll~~~~~is~~aHLgG~L~G~llg~l  405 (465)
                      ++.++...   .+ ..-+-|+++|-++-++
T Consensus       159 ~fs~l~g~---~~-~~dllGi~~GHiy~fl  184 (239)
T KOG0858|consen  159 GFSFLFGG---SI-LVDLLGIIVGHIYYFL  184 (239)
T ss_pred             HHHHHhCC---ch-HHHHHhhhhheeEEEE
Confidence            66666532   23 6778888888766543

>KOG2890 consensus Predicted membrane protein [Function unknown]

Probab=97.44  E-value=0.00017  Score=72.40  Aligned_cols=142  Identities=21%  Similarity=0.238  Sum_probs=95.0

Q ss_pred             CceeeeeecccccCCHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhhhhhhc--------ccCC-----CCccC
Q 012374          270 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF--------LHTP-----EPTVG  336 (465)
Q Consensus       270 gq~WRL~Ts~FlH~gl~HLl~Nml~L~~fG~~LE~~~Gs~rfl~lYllsGi~G~l~s~--------l~~p-----~~~VG  336 (465)
                      -.+|+++|+.|+-.+++-.++|.+.+.+-|..+|+.||+..++.+|.+.-..-+++..        +...     .+..|
T Consensus        65 ~~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G  144 (326)
T KOG2890|consen   65 FFPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHG  144 (326)
T ss_pred             hhhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEecc
Confidence            3689999999999999999999999999999999999999999888765444444321        1111     25889


Q ss_pred             chHHHHHHHHHHHHHHhcchhhhhhhhHHHHHH--HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhcccccCC
Q 012374          337 GTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQ--KAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGD  414 (465)
Q Consensus       337 aSGaVfGLlga~~~~~~~~~~~l~~~~~~~l~~--~~ii~~~l~~ll~~~~~is~~aHLgG~L~G~llg~l~~~~~~~~~  414 (465)
                      ..|.+.|++.++=-..|..-..... .. ++..  .-++.+.+.+++.. -.....+.+.-+..|...+|.+++.-+.+.
T Consensus       145 ~~gilaGilVa~kQllpd~~il~~~-~~-r~~~~~lP~~~l~~~~il~i-~~f~~f~~l~s~~~g~~~sWtYLRfyq~h~  221 (326)
T KOG2890|consen  145 TTGILAGILVAWKQLLPDTIILELK-SG-RFLYAHLPLLVLFLSLILSI-ITFLVFASLPSITFGVLVSWTYLRFYQRHP  221 (326)
T ss_pred             chHHHHHHHHHHHHHcCceeEEecc-ch-hhhhhhCCHHHHHHHHHHHH-HHHHHhhhhHHHHHhhhhhhhhheecccCC
Confidence            9999999998887666543111100 00 1110  00111111111111 123456777888899999999998877665

>KOG4463 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.57  E-value=0.055  Score=53.73  Aligned_cols=60  Identities=15%  Similarity=0.246  Sum_probs=50.8

Q ss_pred             hcCceeeeeecccccCCHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhhhhhhcc
Q 012374          268 LVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFL  328 (465)
Q Consensus       268 ~~gq~WRL~Ts~FlH~gl~HLl~Nml~L~~fG~~LE~~~Gs~rfl~lYllsGi~G~l~s~l  328 (465)
                      ...|+||++.+.|.-.+-..+.+-++.++. .+.+||.+|+.||..+.+.+++.+.++...
T Consensus        47 ~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~-fR~~ERlLGShky~~fiv~s~~~~~l~~~i  106 (323)
T KOG4463|consen   47 KYFQYWRLLMSQFAFSNTPELMFGLYILYY-FRVFERLLGSHKYSVFIVFSGTVSLLLEVI  106 (323)
T ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHH-HHHHHHHhccccceeehhHHHHHHHHHHHH
Confidence            457999999999999998888887766655 568999999999999999999988886543

>COG5291 Predicted membrane protein [Function unknown]

Probab=91.93  E-value=0.15  Score=50.23  Aligned_cols=43  Identities=12%  Similarity=0.298  Sum_probs=35.2

Q ss_pred             hhcCceeeeeecccccCC-HHHHHHHHHHHHHHHHHHHHh-hchh
Q 012374          267 ILVGEWWRLVTPMFLHSG-LFHVALSCWALLTFGPQVCKS-YGPF  309 (465)
Q Consensus       267 i~~gq~WRL~Ts~FlH~g-l~HLl~Nml~L~~fG~~LE~~-~Gs~  309 (465)
                      +.+-||||++|+..+-++ -+..++|+++++--.+.||+- +|+.
T Consensus        55 ~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~f~~~   99 (313)
T COG5291          55 LKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGCFNTS   99 (313)
T ss_pred             HHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhccccCcc
Confidence            366799999997766654 578999999999999999985 5655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	465
2nr9_A	196	Crystal Structure Of Glpg, Rhomboid Peptidase From		3e-06

>pdb|2NR9|A Chain A, Crystal Structure Of Glpg, Rhomboid Peptidase From Haemophilus Influenzae Length = 196

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 5/141 (3%)
Query: 271 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG-GISGNLTSFLH 329
           E WR ++   +H    H+  +      FG  + +++G     ++Y +   I+G + +++ 
Sbjct: 49  EVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVS 108
Query: 330 TPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG-PVD 388
            P    G +G V+A++G   I    N  L   D+ E  F   ++  AL FI   FG  + 
Sbjct: 109 GP-AFFGLSGVVYAVLGYVFIRDKLNHHLF--DLPEGFFTMLLVGIALGFISPLFGVEMG 165
Query: 389 TWAHLGAAFTGIIYGFLTCPL 409
             AH+     G+I+GF+   L
Sbjct: 166 NAAHISGLIVGLIWGFIDSKL 186

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	465
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	4e-37
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	6e-35
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Length = 196

 Score =  133 bits (337), Expect = 4e-37
 Identities = 35/182 (19%), Positives = 70/182 (38%), Gaps = 13/182 (7%)

Query: 225 YLIILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSG 284
            ++  +   V +++ +      +  +        Y A   +     E WR ++   +H  
Sbjct: 13  LILTALC--VLIYIAQQLGFEDDIMYLMH-----YPAYEEQD---SEVWRYISHTLVHLS 62

Query: 285 LFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAI 344
             H+  +      FG  + +++G     ++Y +            +     G +G V+A+
Sbjct: 63  NLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAV 122

Query: 345 IGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGIIYG 403
           +G   I    N  L   D+ E  F   ++  AL FI   FG  +   AH+     G+I+G
Sbjct: 123 LGYVFIRDKLNHHLF--DLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWG 180

Query: 404 FL 405
           F+
Sbjct: 181 FI 182

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Length = 181

 Score =  127 bits (322), Expect = 6e-35
 Identities = 28/179 (15%), Positives = 59/179 (32%), Gaps = 9/179 (5%)

Query: 227 IILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 286
            +++   V VF+                  +L+ A   +  L  E+WR  T   +H  L 
Sbjct: 8   WVMMIACVVVFIAMQ--------ILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLM 59

Query: 287 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIG 346
           H+  +       G  V K  G     +I  +  +         +     G +G V+A++G
Sbjct: 60  HILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMG 119

Query: 347 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFL 405
              +   ++       +   +   A++     +       +   AH+     G+   F+
Sbjct: 120 YVWLRGERDPQSG-IYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFV 177

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 60/423 (14%), Positives = 117/423 (27%), Gaps = 110/423 (26%)

Query: 25  QNERGFKCHCISLTENSRFSSTSDNMCKRWRSIYPNQDVAELPVQWKMSNITSHVGSFSK 84
           Q +  FK   ++L   +   +  + + K    I PN            SNI   + S   
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH----SSNIKLRIHSI-- 230

Query: 85  KASTKEKLRM-------VRC-----------AAKSSDSECQIRILESYLAKLKDDSIQN- 125
               + +LR          C           A  + +  C+I      L   +   + + 
Sbjct: 231 ----QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI------LLTTRFKQVTDF 280

Query: 126 -SSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFSTDQTTERNLVAAQLSISK 184
            S+ ++  I   H         T  +     L  L+   +    +    N     LSI  
Sbjct: 281 LSAATTTHISLDHHSMTL----TPDEVKSLLLKYLDCRPQDLPREVLTTNPRR--LSIIA 334

Query: 185 SSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLIILVSIDVAVFLFEIASP 244
            S R  +     ++ +        +E  L +    E   ++        ++VF      P
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD------RLSVFPPSAHIP 388

Query: 245 IRNSEFGFFSLPLLYGAKI--------NELI---LVGEWWRLVTPMFLHSGLF------- 286
                     L L++   I        N+L    LV +  +  T + + S          
Sbjct: 389 TI-------LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST-ISIPSIYLELKVKLE 440

Query: 287 -----HVAL-------SCWALLTFGPQVCKSYGPFTFFLIYTLGGI--SGNLTSF----- 327
                H ++         +      P     Y  F   + + L  I     +T F     
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY--FYSHIGHHLKNIEHPERMTLFRMVFL 498

Query: 328 --------LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF 379
                   +         +G +   +     Y    K  I  +  +    + +++  L F
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFY----KPYICDNDPKY---ERLVNAILDF 551

Query: 380 IIS 382
           +  
Sbjct: 552 LPK 554

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	465
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.96
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.95

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.96  E-value=1.4e-28  Score=229.35  Aligned_cols=177  Identities=16%  Similarity=0.139  Sum_probs=131.3

Q ss_pred             chHHH-HHHHHHHHHHHHHHhcCCCCccccchhhhhhhhchhhhhhhcCceeeeeecccccCCHHHHHHHHHHHHHHHHH
Q 012374          223 NLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQ  301 (465)
Q Consensus       223 ~p~vt-~Li~inv~VFil~~~~~~~~~~~~l~~~~l~~ga~~~~~i~~gq~WRL~Ts~FlH~gl~HLl~Nml~L~~fG~~  301 (465)
                      .|++| .++++|+++|+++...+...        ...+.+..+..+.++||||++|++|+|.|+.|+++||+.++.+|..
T Consensus         3 ~~pvt~~li~~~v~vf~~~~~~~~~~--------~~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~   74 (181)
T 2xov_A            3 AGPVTWVMMIACVVVFIAMQILGDQE--------VMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGA   74 (181)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCHHH--------HHHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhCcHH--------HHHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            35688 99999999999987643210        1122233333457899999999999999999999999999999999


Q ss_pred             HHHhhchhHHHHHHHHHhhhhhhhhcccCCCCccCchHHHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 012374          302 VCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFII  381 (465)
Q Consensus       302 LE~~~Gs~rfl~lYllsGi~G~l~s~l~~p~~~VGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~l~~~~ii~~~l~~ll  381 (465)
                      +|+.+|+.|++.+|+++|++|+++++++.+...+||||++||++++..+.....++... .++..+.....+.+.+.+..
T Consensus        75 ~E~~~G~~~fl~~yl~~~i~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~p~~~~-~l~~~~~~~~~~~~~~~~~~  153 (181)
T 2xov_A           75 VEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGI-YLQRGLIIFALIWIVAGWFD  153 (181)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHHCGGGSC-CCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHhhCcCcee-eeHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998887767999999999999987754322222110 11222222222222222222


Q ss_pred             hcCCchhHHHHHHHHHHHHHHHHHhhc
Q 012374          382 SNFGPVDTWAHLGAAFTGIIYGFLTCP  408 (465)
Q Consensus       382 ~~~~~is~~aHLgG~L~G~llg~l~~~  408 (465)
                      ...+++|++||++|+++|+++++++.+
T Consensus       154 ~~~~~v~~~aHlgG~l~G~l~~~~~~~  180 (181)
T 2xov_A          154 LFGMSMANGAHIAGLAVGLAMAFVDSL  180 (181)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccccchHHHHHHHHHHHHHHHHHHhc
Confidence            223589999999999999999998754

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.95  E-value=4e-29  Score=235.98  Aligned_cols=177  Identities=19%  Similarity=0.314  Sum_probs=131.3

Q ss_pred             chHHH-HHHHHHHHHHHHHHhcCCCCccccchhhhhhhhchhhhhhhcCceeeeeecccccCCHHHHHHHHHHHHHHHHH
Q 012374          223 NLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQ  301 (465)
Q Consensus       223 ~p~vt-~Li~inv~VFil~~~~~~~~~~~~l~~~~l~~ga~~~~~i~~gq~WRL~Ts~FlH~gl~HLl~Nml~L~~fG~~  301 (465)
                      .+++| .++++|+++|+++...+...        ...+.+..+..+..+||||++|++|+|.|+.|+++||+.++.+|..
T Consensus         8 ~~pvt~~li~~~v~vfll~~~~~~~~--------~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~   79 (196)
T 2nr9_A            8 QGKITLILTALCVLIYIAQQLGFEDD--------IMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGM   79 (196)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTCHHH--------HHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHcCcHH--------HHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            35678 99999999999987643210        1122233343457899999999999999999999999999999999


Q ss_pred             HHHhhchhHHHHHHHHHhhhhhhhhcccCCCCccCchHHHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 012374          302 VCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFII  381 (465)
Q Consensus       302 LE~~~Gs~rfl~lYllsGi~G~l~s~l~~p~~~VGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~l~~~~ii~~~l~~ll  381 (465)
                      +|+.+|++|++.+|+++|++|+++++++.+...+||||++||++++.+......+....  .+..+...+.+.+.+.+..
T Consensus        80 lE~~~G~~~~l~~yl~~~~~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  157 (196)
T 2nr9_A           80 IERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHLFD--LPEGFFTMLLVGIALGFIS  157 (196)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHSSTTSCC--CCCSSTTTTTTTTTHHHHS
T ss_pred             HHHHHChHHHHHHHHHHHHHHHHHHHHhcCCCeeeHHHHHHHHHHHHHHHHHhcchhhc--chHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999887767999999999999987765433332211  1111111111112222221


Q ss_pred             h-cCCchhHHHHHHHHHHHHHHHHHhhcc
Q 012374          382 S-NFGPVDTWAHLGAAFTGIIYGFLTCPL  409 (465)
Q Consensus       382 ~-~~~~is~~aHLgG~L~G~llg~l~~~~  409 (465)
                      . ..+++|++||++|+++|+++++++.++
T Consensus       158 ~~~~~~v~~~aHlgG~l~G~l~~~~~~~~  186 (196)
T 2nr9_A          158 PLFGVEMGNAAHISGLIVGLIWGFIDSKL  186 (196)
T ss_dssp             CSSCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence            1 234799999999999999999988654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	465
d3b45a1	180	f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId:	5e-27
d2nr9a1	189	f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilu	7e-26

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Length = 180

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

 Score =  104 bits (261), Expect = 5e-27
 Identities = 28/180 (15%), Positives = 59/180 (32%), Gaps = 9/180 (5%)

Query: 227 IILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 286
            +++   V VF+                  +L+ A   +  L  E+WR  T   +H  L 
Sbjct: 8   WVMMIACVVVFIAMQ--------ILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLM 59

Query: 287 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIG 346
           H+  +       G  V K  G     +I  +  +         +     G +G V+A++G
Sbjct: 60  HILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMG 119

Query: 347 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLT 406
              +   ++       +   +   A++     +       +   AH+     G+   F+ 
Sbjct: 120 YVWLRGERDPQSGI-YLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVD 178

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Length = 189

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

 Score =  101 bits (253), Expect = 7e-26
 Identities = 35/180 (19%), Positives = 69/180 (38%), Gaps = 11/180 (6%)

Query: 227 IILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 286
           +IL ++ V +++ +      +  +                    E WR ++   +H    
Sbjct: 10  LILTALCVLIYIAQQLGFEDDIMYLMHYPAYE--------EQDSEVWRYISHTLVHLSNL 61

Query: 287 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIG 346
           H+  +      FG  + +++G     ++Y +            +     G +G V+A++G
Sbjct: 62  HILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLG 121

Query: 347 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGIIYGFL 405
              I    N  L   D+ E  F   ++  AL FI   FG  +   AH+     G+I+GF+
Sbjct: 122 YVFIRDKLNHHLF--DLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFI 179

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	465
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.94
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.93

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=3.1e-27  Score=217.00  Aligned_cols=175  Identities=16%  Similarity=0.146  Sum_probs=135.1

Q ss_pred             chHHH-HHHHHHHHHHHHHHhcCCCCccccchhhhhhhhchhhhhhhcCceeeeeecccccCCHHHHHHHHHHHHHHHHH
Q 012374          223 NLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQ  301 (465)
Q Consensus       223 ~p~vt-~Li~inv~VFil~~~~~~~~~~~~l~~~~l~~ga~~~~~i~~gq~WRL~Ts~FlH~gl~HLl~Nml~L~~fG~~  301 (465)
                      .+++| .++++|+++|++....+...        ...+.....+.+.++||||++|++|+|.|+.|+++||+.++.+|+.
T Consensus         3 ~~pvT~~li~i~~~vf~~~~~~~~~~--------~~~~~~~~~~~~~~g~~wrl~T~~f~H~~~~Hl~~N~~~l~~~G~~   74 (180)
T d3b45a1           3 AGPVTWVMMIACVVVFIAMQILGDQE--------VMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGA   74 (180)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCHHH--------HHHHHSSCCSGGGTTCGGGGTGGGGCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhCcHH--------HHHHHcCCCcccccCchHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            34567 99999999999865543211        1133333445567899999999999999999999999999999999


Q ss_pred             HHHhhchhHHHHHHHHHhhhhhhhhcccCCCCccCchHHHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 012374          302 VCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFII  381 (465)
Q Consensus       302 LE~~~Gs~rfl~lYllsGi~G~l~s~l~~p~~~VGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~l~~~~ii~~~l~~ll  381 (465)
                      +|+.+|++|++.+|+++++.|++++.++.+...+|+||+++|++++.....+.++..... .+........+.....+..
T Consensus        75 lE~~~G~~~~~~~~~~~~~~g~l~~~~~~~~~~~G~sg~i~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  153 (180)
T d3b45a1          75 VEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIY-LQRGLIIFALIWIVAGWFD  153 (180)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHHCGGGSCC-CCHHHHHHHHHHHHHHHTT
T ss_pred             HHHhccchhheeeeeHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHhhhcchhHHh-hHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988889999999999999988887665544322 1222222222222222222


Q ss_pred             hcCCchhHHHHHHHHHHHHHHHHHh
Q 012374          382 SNFGPVDTWAHLGAAFTGIIYGFLT  406 (465)
Q Consensus       382 ~~~~~is~~aHLgG~L~G~llg~l~  406 (465)
                      ...+++++.||++|+++|+++|++.
T Consensus       154 ~~~~~v~~~aHlgG~l~G~~~~~~~  178 (180)
T d3b45a1         154 LFGMSMANGAHIAGLAVGLAMAFVD  178 (180)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             hccCchHHHHHHHHHHHHHHHHHHH
Confidence            3457799999999999999999975

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.93  E-value=2.4e-27  Score=219.76  Aligned_cols=175  Identities=18%  Similarity=0.281  Sum_probs=133.8

Q ss_pred             hHHH-HHHHHHHHHHHHHHhcCCCCccccchhhhhhhhchhhhhhhcCceeeeeecccccCCHHHHHHHHHHHHHHHHHH
Q 012374          224 LYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQV  302 (465)
Q Consensus       224 p~vt-~Li~inv~VFil~~~~~~~~~~~~l~~~~l~~ga~~~~~i~~gq~WRL~Ts~FlH~gl~HLl~Nml~L~~fG~~L  302 (465)
                      +++| +++++|+++|+++.......        ...+.......+.++||||++|++|+|.|+.|+++||+.++.+|..+
T Consensus         6 ~pvt~~i~~~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~~   77 (189)
T d2nr9a1           6 GKITLILTALCVLIYIAQQLGFEDD--------IMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMI   77 (189)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCHHH--------HHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhccHH--------HHHHHHccccccccCchHHhHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            3577 99999999999876532110        00111222334578999999999999999999999999999999999


Q ss_pred             HHhhchhHHHHHHHHHhhhhhhhhcccCCCCccCchHHHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 012374          303 CKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIIS  382 (465)
Q Consensus       303 E~~~Gs~rfl~lYllsGi~G~l~s~l~~p~~~VGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~l~~~~ii~~~l~~ll~  382 (465)
                      |+.+|+.+++.+|++++++|++++.+..+.+.+|+||++||++++.+...+.++.....+...  ...+++.+.+.+...
T Consensus        78 E~~~G~~~~~~~~~~~~~~~~l~~~~~~~~~~vGaSG~v~gl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  155 (189)
T d2nr9a1          78 ERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGF--FTMLLVGIALGFISP  155 (189)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHSSTTSCCCCCSS--TTTTTTTTTHHHHSC
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHhhhHhccHHHH--HHHHHHHHHHHHHHh
Confidence            999999999999999999999999888888899999999999999888877766543322111  111222222333332


Q ss_pred             -cCCchhHHHHHHHHHHHHHHHHHhhc
Q 012374          383 -NFGPVDTWAHLGAAFTGIIYGFLTCP  408 (465)
Q Consensus       383 -~~~~is~~aHLgG~L~G~llg~l~~~  408 (465)
                       ..++++++||++|+++|+++|+++.+
T Consensus       156 ~~~~~v~~~aHl~G~l~G~~~g~~~~~  182 (189)
T d2nr9a1         156 LFGVEMGNAAHISGLIVGLIWGFIDSK  182 (189)
T ss_dssp             SSCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCChHHHHHHHHHHHHHHHHHHHHc
Confidence             33679999999999999999998854