Citrus Sinensis ID: 012500

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460--
Protein Sequence
MSFCIHVLLCLIGLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQCSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGNGDNL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccHHHHHHcccHHHHHHHHHHHHHHccHcHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHcccccccc
Coil and Loop (DISEMBL)
MSFCIHVLLCLIGLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCsshhcsqcshnpfrligVGLSVWTFatagcgssfdFWSIAICRMLVGVGEasfislaapfiddnapvpqktAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIkplqlkgfapaesgkAQVVASVSegseasnlndhvsedisdqasERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGaysywgpkagyniyhmsnadmmFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLvfatqapvnyVCLHSVKPSLRALSMAISTVSIhifgdvpssplvgvlQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKfnedgenqisldskanmkpllegngdnl
Flexible Loop (DISEMBL)
MSFCIHVLLCLIGLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQCSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEgseasnlndhvsedisdqaSERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENqisldskanmkpllegngdnl
Low Complexity Region (SEG)
MSFCIHVLLCLIGLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVcsshhcsqcshNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTgvalgyvyggvvgSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQvvasvsegseasNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFggvtivcgivgtisggFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGNGDNL
Disordered region (IsUnstruct)
**FCIHVLLCLIGLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQCSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA*************************************************QLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKF***************************
Disordered Region (DISOPRED)
MSFCIHVLLCLIGLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQCSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSID*****************************
Disordered Region (DISEMBL)
MSFCIHVLLCLIGLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQCSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVS*********RSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGNGDNL
Disordered Region (DISPRO)
MSFCIHVLLCLIGLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQCSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL******************************************************NQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNED************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSFCIHVLLCLIGLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQCSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGNGDNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	462	2.2.26 [Sep-21-2011]
Q9FLG8	484	Probable sphingolipid tra	yes	no	0.831	0.793	0.653	1e-150
F4IKF6	510	Probable sphingolipid tra	no	no	0.800	0.725	0.674	1e-147
Q6NMN6	492	Probable sphingolipid tra	no	no	0.781	0.733	0.595	1e-129
Q5XGK0	526	Protein spinster homolog	N/A	no	0.662	0.581	0.285	2e-22
A8WGF7	526	Protein spinster homolog	yes	no	0.662	0.581	0.271	3e-21
Q8IVW8	549	Protein spinster homolog	yes	no	0.675	0.568	0.234	4e-18
A2SWM2	504	Protein spinster homolog	yes	no	0.670	0.615	0.241	1e-17
Q9GQQ0	605	Protein spinster OS=Droso	yes	no	0.679	0.519	0.261	3e-17
Q91VM4	549	Protein spinster homolog	yes	no	0.675	0.568	0.229	8e-17
Q7ZU13	506	Protein spinster homolog	no	no	0.759	0.693	0.249	2e-16

>sp|Q9FLG8|SPNS2_ARATH Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana GN=At5g64500 PE=2 SV=1

 Score =  533 bits (1372), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 272/416 (65%), Positives = 310/416 (74%), Gaps = 32/416 (7%)

Query: 42  FTVTQLVCSSHHCSQC-SHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA 100
           F V  LV S    S   S NPFRLIGVGLS+WT A  GCG SFDFWSI ICRM VGVGEA
Sbjct: 98  FMVGLLVASPIFASLAKSVNPFRLIGVGLSIWTLAVIGCGLSFDFWSITICRMFVGVGEA 157

Query: 101 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAIL 160
           SF+SLAAPFIDDNAP  QK+AWL++FYMCIPTG A GYVYGGVVGS L WR AFWGEAIL
Sbjct: 158 SFVSLAAPFIDDNAPHDQKSAWLAVFYMCIPTGYAFGYVYGGVVGSVLPWRAAFWGEAIL 217

Query: 161 MLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIK 220
           MLPFAVL FVIKPL LKGFAP ++GK +            NLN               + 
Sbjct: 218 MLPFAVLGFVIKPLHLKGFAPDDTGKPR----------TDNLN---------------VL 252

Query: 221 SIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN 280
            +G        S   +D K+LL +KVYV N+LGYIAYNFV+GAYSYWGPKAGYNIY M N
Sbjct: 253 PVGYG-----FSAVMKDLKLLLVDKVYVTNILGYIAYNFVLGAYSYWGPKAGYNIYKMEN 307

Query: 281 ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYG 340
           ADM+FGGVT+VCGIVGT+SGG ILD M ATISNAFK+LS +TF+GAI C  AFC  S+Y 
Sbjct: 308 ADMIFGGVTVVCGIVGTLSGGVILDYMDATISNAFKVLSVSTFIGAIFCFAAFCFKSMYA 367

Query: 341 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD 400
           FLALF VGELLVFATQ PVN++ LH VKPSLR L+MA+STVSIHIFGDVPSSPLVGVLQD
Sbjct: 368 FLALFAVGELLVFATQGPVNFIVLHCVKPSLRPLAMAMSTVSIHIFGDVPSSPLVGVLQD 427

Query: 401 HVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLE 456
           +VNNWR T+L LT + F AA IW +GIFL S+D++NED E   ++  ++   PLL+
Sbjct: 428 YVNNWRVTSLVLTFVLFPAAAIWSIGIFLNSVDRYNEDSEPD-AVTRESTAAPLLQ 482

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage.
Arabidopsis thaliana (taxid: 3702)

>sp|F4IKF6|SPNS3_ARATH Probable sphingolipid transporter spinster homolog 3 OS=Arabidopsis thaliana GN=At2g22730 PE=3 SV=1

 Score =  523 bits (1346), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 259/384 (67%), Positives = 299/384 (77%), Gaps = 14/384 (3%)

Query: 63  RLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW 122
           RLIGVGL+VWT A  GCGSSF FW I +CRM VGVGEASFISLAAPFIDDNAP  QK AW
Sbjct: 128 RLIGVGLTVWTIAVLGCGSSFAFWFIVLCRMFVGVGEASFISLAAPFIDDNAPQEQKAAW 187

Query: 123 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPA 182
           L +FYMCIP+GVALGYVYGG VG H +WRYAFWGEA+LM PFAVL F++KPLQLKG    
Sbjct: 188 LGLFYMCIPSGVALGYVYGGYVGKHFSWRYAFWGEAVLMAPFAVLGFLMKPLQLKG---- 243

Query: 183 ESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLL 242
                   +   + +    +++ +  D  + + E S  S   + F    + F++D KVL 
Sbjct: 244 --------SETLKNNNRLQVDNEIEHDQFEVSIETSKSSYANAVF-KSFTGFAKDMKVLY 294

Query: 243 QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGF 302
           +EKV+VVNVLGY++YNFVIGAYSYWGPKAGYNIY M NADM+FG VTI+CGIVGT+SGGF
Sbjct: 295 KEKVFVVNVLGYVSYNFVIGAYSYWGPKAGYNIYKMKNADMIFGAVTIICGIVGTLSGGF 354

Query: 303 ILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYV 362
           ILD++ ATI NAFKLLS ATFLGA+ C TAF L SLYGF+ALF +GELLVFATQAPVNYV
Sbjct: 355 ILDRVTATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGFIALFALGELLVFATQAPVNYV 414

Query: 363 CLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGI 422
           CLH VKPSLR LSMAISTV+IHIFGDVPSSPLVG++QDH+N+WRKTTL LTSI FLAA I
Sbjct: 415 CLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGIVQDHINSWRKTTLILTSILFLAAAI 474

Query: 423 WFVG-IFLKSIDKFNEDGENQISL 445
           WF+G I L S    +E    QI L
Sbjct: 475 WFIGKINLNSFYSNDESFLVQIKL 498

Probable sphingolipid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NMN6|SPNS1_ARATH Probable sphingolipid transporter spinster homolog 1 OS=Arabidopsis thaliana GN=At5g65687 PE=1 SV=1

 Score =  463 bits (1191), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/378 (59%), Positives = 281/378 (74%), Gaps = 17/378 (4%)

Query: 60  NPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK 119
           NPF+LIGVGL+VWT A  GCG S++FW IA+ RM VGVGEASFISLAAP+IDD+APV +K
Sbjct: 108 NPFKLIGVGLTVWTIAVIGCGFSYNFWMIAVFRMFVGVGEASFISLAAPYIDDSAPVARK 167

Query: 120 TAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP-LQLKG 178
             WL +FYMCIP GVALGYV+GG +G+HL WR+AF+ EAI M  F +L+F IKP  QLKG
Sbjct: 168 NFWLGLFYMCIPAGVALGYVFGGYIGNHLGWRWAFYIEAIAMAVFVILSFCIKPPQQLKG 227

Query: 179 FAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDT 238
           FA  +S K          ++A           + Q   ++ KS       N +  F +D 
Sbjct: 228 FADKDSKKPSTSIETVAPTDAE----------ASQIKTKTPKS------KNLVVLFGKDL 271

Query: 239 KVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTI 298
           K L  EKV++VNVLGYI YNFVIGAYSYWGPKAG+ IY M NADM+FGG+TI+CGI+GT+
Sbjct: 272 KALFSEKVFIVNVLGYITYNFVIGAYSYWGPKAGFGIYKMKNADMIFGGLTIICGIIGTL 331

Query: 299 SGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAP 358
            G ++LD++ AT+SN FKLL+A+T LGA  C TAF + ++Y F+ALF VGE+L+FA QAP
Sbjct: 332 GGSYVLDRINATLSNTFKLLAASTLLGAAFCFTAFLMKNMYAFIALFAVGEILIFAPQAP 391

Query: 359 VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFL 418
           VN+VCLH V+P+LR LSMA STV IHI GDVPSSPL G +QDH+ NWRK+TL +TSI FL
Sbjct: 392 VNFVCLHCVRPNLRPLSMASSTVLIHILGDVPSSPLYGKMQDHLKNWRKSTLIITSILFL 451

Query: 419 AAGIWFVGIFLKSIDKFN 436
           AA IW +GIF+ S+D+ N
Sbjct: 452 AAIIWGIGIFMNSVDRSN 469

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5XGK0|SPNS1_XENLA Protein spinster homolog 1 OS=Xenopus laevis GN=spns1 PE=2 SV=1

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 157/364 (43%), Gaps = 58/364 (15%)

Query: 59  HNPFRLIGVGLSVWTFAT--AGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPV 116
           +N   ++ VG+S W+  T  +   S+  FW   I R LVGVGEAS+ ++A   I D    
Sbjct: 122 YNRKLIMCVGISFWSLVTLLSSFVSNQYFWLFLITRGLVGVGEASYSTIAPTIIADLFLA 181

Query: 117 PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL 176
            Q+T  LS FY   P G  LGY+    VGS +      W  A+ + P   L  V+  +  
Sbjct: 182 DQRTRMLSFFYFATPVGCGLGYI----VGSEMTSAAGDWHWALRVTPGLGLLAVLLLI-- 235

Query: 177 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQ 236
                                        V+E+    A ER        R L   S +S 
Sbjct: 236 ----------------------------FVAEEPPRGALERK-----TDRPLTNTS-WSS 261

Query: 237 DTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGP----KAGYNIYH-------MSNAD--M 283
           D K LL+   ++++  G+    FV GA + WGP    ++   IY        + N D  M
Sbjct: 262 DMKALLKNPSFILSTFGFTTVAFVTGALALWGPTYLMRSRMVIYKSKPCEGGICNYDDSM 321

Query: 284 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL---TAFCLSSLYG 340
           +FGG+T + GI+G ++G  I  +   T   A  L+ A   + +   L    AF  +SL  
Sbjct: 322 IFGGITCITGILGVLTGVEISKRYRKTNPRADPLVCAVGMISSAPFLFLSLAFADTSLVA 381

Query: 341 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD 400
                 +GE L+    A V  + L+ V P+ R+ + A+  V  H+ GD  S  L+GV+ D
Sbjct: 382 TYVFIFIGETLLSLNWALVADILLYVVIPTRRSTAEALQIVVSHLLGDAGSPYLIGVISD 441

Query: 401 HVNN 404
            +  
Sbjct: 442 QIQK 445

Sphingolipid transporter.

Xenopus laevis (taxid: 8355)

>sp|A8WGF7|SPNS1_XENTR Protein spinster homolog 1 OS=Xenopus tropicalis GN=spns1 PE=2 SV=2

 Score =  103 bits (257), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 154/364 (42%), Gaps = 58/364 (15%)

Query: 59  HNPFRLIGVGLSVWTFAT--AGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPV 116
           +N   ++ +G+S W+  T  +   S   FW   + R LVGVGEAS+ ++A   I D    
Sbjct: 122 YNRKLIMCIGISFWSLVTLLSSFVSKQYFWLFLLTRGLVGVGEASYSTIAPTIIADLFLA 181

Query: 117 PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL 176
            Q++  LS FY   P G  LGY+     GS +      W  A+ + P   L  V+  +  
Sbjct: 182 DQRSRMLSFFYFATPVGCGLGYI----AGSKVTSTAGDWHWALRVTPGLGLVAVLLLI-- 235

Query: 177 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQ 236
                                        V+++    A ER        R L   S FS 
Sbjct: 236 ----------------------------FVAKEPPRGALERK-----SDRPLTNTSWFS- 261

Query: 237 DTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGP----KAGYNIYHMS---------NADM 283
           D K LL+   ++++  G+    FV GA + WGP    ++   IY            +  M
Sbjct: 262 DVKALLKNPSFILSTFGFTTVAFVTGALALWGPTYLMRSRRVIYKTEPCQGGICNYDDSM 321

Query: 284 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL---TAFCLSSLYG 340
           +FGG+T V G++G ++G  I  +   T   A  L+ A   + +   L    AF  +SL  
Sbjct: 322 IFGGITCVTGVLGVLTGVEISKRYRKTNPRADPLVCAVGMISSAPFLYLSLAFADTSLVA 381

Query: 341 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD 400
             A   +GE L+    A V  + L+ V P+ R+ + A+  V  H+ GD  S  L+GV+ D
Sbjct: 382 TYAFIFIGETLLSLNWALVADILLYVVIPTRRSTAEALQIVVSHLLGDAGSPYLIGVISD 441

Query: 401 HVNN 404
            +  
Sbjct: 442 QIQK 445

Sphingolipid transporter.

Xenopus tropicalis (taxid: 8364)

>sp|Q8IVW8|SPNS2_HUMAN Protein spinster homolog 2 OS=Homo sapiens GN=SPNS2 PE=1 SV=2

 Score = 92.8 bits (229), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 91/388 (23%), Positives = 153/388 (39%), Gaps = 76/388 (19%)

Query: 85  FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV 144
           FW + + R LVG+GEAS+ ++A   I D      +T  LS+FY  IP G  LGY+ G  V
Sbjct: 193 FWLLVLSRGLVGIGEASYSTIAPTIIGDLFTKNTRTLMLSVFYFAIPLGSGLGYITGSSV 252

Query: 145 GSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLN 203
                +W +A     +L +    L  ++ P   +G A                       
Sbjct: 253 KQAAGDWHWALRVSPVLGMITGTLILILVPATKRGHA----------------------- 289

Query: 204 DHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGA 263
               + + DQ   R+               + +D K L++ + YV + L   A +F  GA
Sbjct: 290 ----DQLGDQLKART--------------SWLRDMKALIRNRSYVFSSLATSAVSFATGA 331

Query: 264 YSYWGP------KAGYNIYHMSNA-------DMMFGGVTIVCGIVGTISGGFILDQMGAT 310
              W P      +         N+        ++FG +T   G +G ++G          
Sbjct: 332 LGMWIPLYLHRAQVVQKTAETCNSPPCGAKDSLIFGAITCFTGFLGVVTGAGATRWCRLK 391

Query: 311 ISNAFKLLSAATFLGA---ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSV 367
              A  L+ A   LG+   I  +     SS+ G      VGE L+F+  A    + ++ V
Sbjct: 392 TQRADPLVCAVGMLGSAIFICLIFVAAKSSIVGAYICIFVGETLLFSNWAITADILMYVV 451

Query: 368 KPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTT------------------ 409
            P+ RA ++A+ + + H+ GD  S  L+G + D +    K +                  
Sbjct: 452 IPTRRATAVALQSFTSHLLGDAGSPYLIGFISDLIRQSTKDSPLWEFLSLGYALMLCPFV 511

Query: 410 LALTSIFFLAAGIWFVGIFLKSIDKFNE 437
           + L  +FFLA  ++FV    ++  + N+
Sbjct: 512 VVLGGMFFLATALFFVSDRARAEQQVNQ 539

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Homo sapiens (taxid: 9606)

>sp|A2SWM2|SPNS2_DANRE Protein spinster homolog 2 OS=Danio rerio GN=spns2 PE=1 SV=2

 Score = 91.7 bits (226), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 154/390 (39%), Gaps = 80/390 (20%)

Query: 85  FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV 144
           +W + + R LVG+GE+S+ S++   I D     ++T  LS+FY+ IP G  LGY+ G + 
Sbjct: 146 YWLLVLSRCLVGIGESSYSSISPTIIGDLFTNNKRTVMLSVFYLAIPLGSGLGYILGSIA 205

Query: 145 ---GSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASN 201
              G H  W +A     +L L    L  +                      VSE    S 
Sbjct: 206 KDAGGH--WYWALRVSPMLGLTAGTLILIF---------------------VSEPKRGS- 241

Query: 202 LNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVI 261
                    +DQ   R          L   + +  D K L + + YV + L   A +F  
Sbjct: 242 ---------ADQPGGR----------LKTRTSWVCDMKALAKNRSYVFSSLASAAVSFAT 282

Query: 262 GAYSYWGPK-----------AGYNIYH--MSNADMMFGGVTIVCGIVGTISGGFILDQMG 308
           GA+  W P+           A    Y    S   ++FG +T V G++G + G        
Sbjct: 283 GAFGIWIPQYLVRAQVVQKSAESCTYQPCSSRDSLIFGAITCVTGLLGVVIGAVTTRLCR 342

Query: 309 ATISNAFKLLSAATFLGA---ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLH 365
                A  L+ A + LG+   I  +      S+ G      +GE L+F   A    + ++
Sbjct: 343 QKTERADPLVCAVSMLGSAIFICLIFVVAKKSIVGAYICIFIGETLLFLNWAITADILMY 402

Query: 366 SVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTT---------------- 409
            V P+ RA ++A    + H+ GD  S  L+G++ D +     T+                
Sbjct: 403 VVIPTRRATAVAFQGFTSHLLGDAGSPYLIGLISDSLQESYATSEIWQFLSLGYALMLCP 462

Query: 410 --LALTSIFFLAAGIWFVGIFLKSIDKFNE 437
             + L  +FFLA  ++F+    K+  + N+
Sbjct: 463 FVIVLGGMFFLATALFFLDDRDKAAKQVNQ 492

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Danio rerio (taxid: 7955)

>sp|Q9GQQ0|SPIN_DROME Protein spinster OS=Drosophila melanogaster GN=spin PE=1 SV=1

 Score = 90.1 bits (222), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 162/378 (42%), Gaps = 64/378 (16%)

Query: 42  FTVTQLVCSS--HHCSQCSHNPFRLIGVGLSVWTFATAGCGSSFDF-WSIAICRMLVGVG 98
           F ++ +VC+    +       P+ ++ VG+ +W+  T        F W IA  R LVG+G
Sbjct: 159 FVISYMVCAPIFGYLGDRYSRPW-IMAVGVGLWSTTTLLGSFMKQFGWFIAF-RALVGIG 216

Query: 99  EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL--NWRYAFWG 156
           EAS+ ++A   I D      ++  L++FY  IP G  LGY+ G    +HL  +WR+A   
Sbjct: 217 EASYSTIAPTIISDLFVHDMRSKMLALFYFAIPVGSGLGYIVGSKT-AHLANDWRWALRV 275

Query: 157 EAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASE 216
             IL +    L  +IK                 V   SEGS   NL              
Sbjct: 276 TPILGIVAVFLILLIK---------------DPVRGHSEGSH--NL-------------- 304

Query: 217 RSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIY 276
                        + + + QD K L++ + ++++  G+    FV GA ++WGP   Y   
Sbjct: 305 -------------EATTYKQDIKALVRNRSFMLSTAGFTCVAFVAGALAWWGPSFIYLGM 351

Query: 277 HMS--NADMM-------FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI 327
            M   N +++       FG +T++ G++G   G F+   +      A  ++ A   L + 
Sbjct: 352 KMQPGNENIVQDDVAFNFGVITMLAGLLGVPLGSFLSQYLVKRYPTADPVICAFGLLVSA 411

Query: 328 SCLTAFCL---SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIH 384
             LT  CL   S+  G  AL   G+L +    A V  + L+ V P+ R+ + A   +  H
Sbjct: 412 PLLTGACLLVNSNSVGTYALIFFGQLALNLNWAIVADILLYVVVPTRRSTAEAFQILISH 471

Query: 385 IFGDVPSSPLVGVLQDHV 402
             GD  S  LVG + + +
Sbjct: 472 ALGDAGSPYLVGAISEAI 489

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage. Involved in TGF-beta-mediated synaptic growth regulation both pre- and postsynaptically via its function in endosomal storage regulation. Also required during oogenesis by regulating yolk spheres storage.

Drosophila melanogaster (taxid: 7227)

>sp|Q91VM4|SPNS2_MOUSE Protein spinster homolog 2 OS=Mus musculus GN=Spns2 PE=2 SV=2

 Score = 89.0 bits (219), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 89/388 (22%), Positives = 151/388 (38%), Gaps = 76/388 (19%)

Query: 85  FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV 144
           FW + + R LVG+GEAS+ ++A   I D      +T  LS+FY  IP G  LGY+ G  V
Sbjct: 193 FWLLVLSRGLVGIGEASYSTIAPTIIGDLFTKNTRTLMLSVFYFAIPLGSGLGYITGSSV 252

Query: 145 GSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLN 203
                +W +A     +L +    L  ++ P   +G A    G+                 
Sbjct: 253 KQAAGDWHWALRVSPVLGMITGTLILILVPATKRGHADQLGGQ----------------- 295

Query: 204 DHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGA 263
                                   L   + + +D K L++ + YV + L   A +F  GA
Sbjct: 296 ------------------------LKARTSWLRDMKALIRNRSYVFSSLATSAVSFATGA 331

Query: 264 YSYWGP------KAGYNIYHMSNA-------DMMFGGVTIVCGIVGTISGGFILDQMGAT 310
              W P      +         N+        ++FG +T   G +G ++G          
Sbjct: 332 LGMWIPLYLHRAQVVQKTAETCNSPPCGAKDSLIFGAITCFTGFLGVVTGAGATRWCRLR 391

Query: 311 ISNAFKLLSAATFLGA---ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSV 367
              A  L+ A   LG+   I  +     +S+ G      VGE L+F+  A    + ++ V
Sbjct: 392 TQRADPLVCAVGMLGSAIFICLIFVAAKTSIVGAYICIFVGETLLFSNWAITADILMYVV 451

Query: 368 KPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTT------------------ 409
            P+ RA ++A+ + + H+ GD  S  L+G + D +    K +                  
Sbjct: 452 IPTRRATAVALQSFTSHLLGDAGSPYLIGFISDLIRQSTKDSPLWEFLSLGYALMLCPFV 511

Query: 410 LALTSIFFLAAGIWFVGIFLKSIDKFNE 437
           + L  +FFLA  ++F+    K+  + N+
Sbjct: 512 VVLGGMFFLATALFFLSDRAKAEQQVNQ 539

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Mus musculus (taxid: 10090)

>sp|Q7ZU13|SPNS1_DANRE Protein spinster homolog 1 OS=Danio rerio GN=spns1 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 106/425 (24%), Positives = 173/425 (40%), Gaps = 74/425 (17%)

Query: 59  HNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLAAPFIDDNA 114
           +N   ++ VG+  W+  T    SSF     FW++ + R LVGVGEAS+ ++A   I D  
Sbjct: 111 YNRKLIMCVGIFFWSVVT--LASSFIGKDHFWALLLTRGLVGVGEASYSTIAPTIIADLF 168

Query: 115 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLP-FAVLAFVIKP 173
              ++T  LS+FY  IP G  +GY+    VGS ++     W  A+ + P   +LA  +  
Sbjct: 169 VKEKRTNMLSIFYFAIPVGSGMGYI----VGSKVDTVAKDWHWALRVTPGLGLLAVFLLM 224

Query: 174 LQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQ 233
           L +                                    Q  +R          L++ S 
Sbjct: 225 LVV------------------------------------QEPKRGAIEAHPEHTLHRTSW 248

Query: 234 FSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGP----KAG---------YNIYHMSN 280
            + D K L +   ++++  G+ A  FV G+ + W P    +AG         +      +
Sbjct: 249 LA-DMKALCRNPSFILSTFGFTAVAFVTGSLALWAPAFLFRAGVFTGVKQPCFKAPCDDS 307

Query: 281 ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL---TAFCLSS 337
             ++FG +T+V GI+G  SG      +      A  L+ AA  L A   L     F  +S
Sbjct: 308 DSLIFGAITVVTGILGVASGVQASKLLRTRTPRADPLVCAAGLLLAAPFLYLSIMFAQAS 367

Query: 338 LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGV 397
                    +GE  +    A V  + L+ V P+ R+ + A   V  H+ GD  S  L+GV
Sbjct: 368 TVATYVFIFLGETFLSMNWAIVADILLYVVIPTRRSTAEAFQIVLSHLLGDAISPYLIGV 427

Query: 398 LQDHVNN-----WR----KTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSK 448
           + D +       W     + +L L S   +A G +F+   +  I+K  +  EN +  D  
Sbjct: 428 VSDSIKESNSYMWEFRSLQMSLLLCSFVAVAGGAFFLATAV-FIEKDRDLAENYVPSDDA 486

Query: 449 ANMKP 453
             + P
Sbjct: 487 PIVVP 491

Sphingolipid transporter.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	462
255576025	505	transporter, putative [Ricinus communis]	0.859	0.786	0.790	0.0
359480514	510	PREDICTED: protein spinster homolog 1-li	0.906	0.821	0.745	1e-180
297735860	534	unnamed protein product [Vitis vinifera]	0.906	0.784	0.745	1e-180
296088668	427	unnamed protein product [Vitis vinifera]	0.865	0.936	0.712	1e-168
255554517	541	transporter, putative [Ricinus communis]	0.902	0.770	0.691	1e-167
359496250	466	PREDICTED: protein spinster homolog 1-li	0.880	0.873	0.700	1e-167
357485271	497	Spinster-like protein [Medicago truncatu	0.891	0.828	0.693	1e-164
356531403	496	PREDICTED: protein spinster homolog 1-li	0.857	0.798	0.702	1e-161
356546730	532	PREDICTED: protein spinster homolog 1-li	0.898	0.780	0.668	1e-160
356519493	530	PREDICTED: protein spinster homolog 1-li	0.863	0.752	0.685	1e-159

>gi|255576025|ref|XP_002528908.1| transporter, putative [Ricinus communis] gi|223531662|gb|EEF33488.1| transporter, putative [Ricinus communis]

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/401 (79%), Positives = 353/401 (88%), Gaps = 4/401 (0%)

Query: 58  SHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP 117
           SHNPFRLIGVGLSVWTFA AGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAP  
Sbjct: 98  SHNPFRLIGVGLSVWTFAAAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPAA 157

Query: 118 QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK 177
           QKTAWL+ FYMCIPTGVALGYVYGG VGS+ NWRYAFWGEA+LMLPFAVL F +KPLQLK
Sbjct: 158 QKTAWLATFYMCIPTGVALGYVYGGFVGSNFNWRYAFWGEALLMLPFAVLGFAMKPLQLK 217

Query: 178 GFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQD 237
           GFAPAES KA + +S+   + AS   D+ +EDIS +A + S K  GE   L+QLSQFS+D
Sbjct: 218 GFAPAESKKA-LTSSIE--ANASITEDNGNEDISSRAFKAS-KLKGEFTILHQLSQFSKD 273

Query: 238 TKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGT 297
            KVLL +KVYVVNVLGYI+YNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTI+CGI+GT
Sbjct: 274 MKVLLVDKVYVVNVLGYISYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIICGILGT 333

Query: 298 ISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQA 357
           ++GGFILD+M ATISNAFKLLS ATFLGAI C +AFCL +LYGF+ LF+VGELLVFATQA
Sbjct: 334 LAGGFILDRMNATISNAFKLLSGATFLGAIFCFSAFCLKNLYGFIILFSVGELLVFATQA 393

Query: 358 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFF 417
           PVNYVCLH VKP LR LSMAISTVSIHIFGDVPSSPLVGVLQDH+NNWR+T+L LT++ F
Sbjct: 394 PVNYVCLHCVKPGLRPLSMAISTVSIHIFGDVPSSPLVGVLQDHINNWRETSLILTAVLF 453

Query: 418 LAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGN 458
           +AAGIWFVG+FLK +D  NEDGENQIS + K +M+PLLE N
Sbjct: 454 IAAGIWFVGVFLKGVDMSNEDGENQISANVKGSMEPLLEEN 494

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480514|ref|XP_002273321.2| PREDICTED: protein spinster homolog 1-like [Vitis vinifera]

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 317/425 (74%), Positives = 355/425 (83%), Gaps = 6/425 (1%)

Query: 42  FTVTQLVCSSHHCSQC-SHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA 100
           F V  LV S    S   SHNPFRLIGVGLS WTFATAGCGSSFDFWSIAI RMLVGVGEA
Sbjct: 81  FMVGLLVASPIFASLAKSHNPFRLIGVGLSFWTFATAGCGSSFDFWSIAIFRMLVGVGEA 140

Query: 101 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAIL 160
           SF+SLAAPFIDDNAPV QKTAWL+MFYMCIPTG+ALGYVYGG VG H NWRYAFWGEAIL
Sbjct: 141 SFVSLAAPFIDDNAPVTQKTAWLAMFYMCIPTGIALGYVYGGFVGEHFNWRYAFWGEAIL 200

Query: 161 MLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHV---SEDISDQASER 217
           MLPFAVL FV+KPLQLKGFAPAES K   V   +EG   SN+N  V   +E IS+ AS +
Sbjct: 201 MLPFAVLGFVMKPLQLKGFAPAES-KNATVGPETEGPGLSNVNGGVLIRNELISNNASNK 259

Query: 218 SIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH 277
           + KS G  +  NQ  +F  D K+LL +KVYVVNVLGY++YNFVIGAYSYWGPKAGYNIYH
Sbjct: 260 ASKSRGAFKMCNQFPRFLIDMKMLLLDKVYVVNVLGYVSYNFVIGAYSYWGPKAGYNIYH 319

Query: 278 MSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS 337
           M+NADMMFGG+TIVCGI+GT++GG+ILD M ATISNAFKLLS ATFLGAI C  +FCL  
Sbjct: 320 MNNADMMFGGITIVCGILGTLAGGYILDCMDATISNAFKLLSGATFLGAIFCFISFCLKG 379

Query: 338 LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGV 397
           LYGF+ALF+VGELLVFATQAPVNYVCLH V+PSLR LSMA+STV+IHIFGDVPSSPLVG+
Sbjct: 380 LYGFIALFSVGELLVFATQAPVNYVCLHCVRPSLRPLSMAMSTVAIHIFGDVPSSPLVGI 439

Query: 398 LQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEG 457
           LQDHVNNWR+TTL LTS+ FLA+GIWF+G+FL S+D+F  D ENQ S+ SKA MKPLLEG
Sbjct: 440 LQDHVNNWRETTLILTSVLFLASGIWFLGVFLDSVDRFKLDSENQ-SVQSKATMKPLLEG 498

Query: 458 NGDNL 462
             D +
Sbjct: 499 EDDEM 503

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735860|emb|CBI18614.3| unnamed protein product [Vitis vinifera]

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 317/425 (74%), Positives = 355/425 (83%), Gaps = 6/425 (1%)

Query: 42  FTVTQLVCSSHHCSQC-SHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA 100
           F V  LV S    S   SHNPFRLIGVGLS WTFATAGCGSSFDFWSIAI RMLVGVGEA
Sbjct: 105 FMVGLLVASPIFASLAKSHNPFRLIGVGLSFWTFATAGCGSSFDFWSIAIFRMLVGVGEA 164

Query: 101 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAIL 160
           SF+SLAAPFIDDNAPV QKTAWL+MFYMCIPTG+ALGYVYGG VG H NWRYAFWGEAIL
Sbjct: 165 SFVSLAAPFIDDNAPVTQKTAWLAMFYMCIPTGIALGYVYGGFVGEHFNWRYAFWGEAIL 224

Query: 161 MLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHV---SEDISDQASER 217
           MLPFAVL FV+KPLQLKGFAPAES K   V   +EG   SN+N  V   +E IS+ AS +
Sbjct: 225 MLPFAVLGFVMKPLQLKGFAPAES-KNATVGPETEGPGLSNVNGGVLIRNELISNNASNK 283

Query: 218 SIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH 277
           + KS G  +  NQ  +F  D K+LL +KVYVVNVLGY++YNFVIGAYSYWGPKAGYNIYH
Sbjct: 284 ASKSRGAFKMCNQFPRFLIDMKMLLLDKVYVVNVLGYVSYNFVIGAYSYWGPKAGYNIYH 343

Query: 278 MSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS 337
           M+NADMMFGG+TIVCGI+GT++GG+ILD M ATISNAFKLLS ATFLGAI C  +FCL  
Sbjct: 344 MNNADMMFGGITIVCGILGTLAGGYILDCMDATISNAFKLLSGATFLGAIFCFISFCLKG 403

Query: 338 LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGV 397
           LYGF+ALF+VGELLVFATQAPVNYVCLH V+PSLR LSMA+STV+IHIFGDVPSSPLVG+
Sbjct: 404 LYGFIALFSVGELLVFATQAPVNYVCLHCVRPSLRPLSMAMSTVAIHIFGDVPSSPLVGI 463

Query: 398 LQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEG 457
           LQDHVNNWR+TTL LTS+ FLA+GIWF+G+FL S+D+F  D ENQ S+ SKA MKPLLEG
Sbjct: 464 LQDHVNNWRETTLILTSVLFLASGIWFLGVFLDSVDRFKLDSENQ-SVQSKATMKPLLEG 522

Query: 458 NGDNL 462
             D +
Sbjct: 523 EDDEM 527

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088668|emb|CBI38036.3| unnamed protein product [Vitis vinifera]

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 290/407 (71%), Positives = 332/407 (81%), Gaps = 7/407 (1%)

Query: 57  CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPV 116
           CS NPFRLIGVGLSVWT A  GCG SF+FWSI ICRM VGVGEASFISLAAPFIDDNAPV
Sbjct: 10  CSVNPFRLIGVGLSVWTVAAVGCGFSFNFWSITICRMFVGVGEASFISLAAPFIDDNAPV 69

Query: 117 PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL 176
            QKTAWL++FYMCIP+G+A+GYVYGG+VG H +WRYAFWGEAILMLPFA+L F++KPLQL
Sbjct: 70  AQKTAWLAIFYMCIPSGIAVGYVYGGLVGDHFSWRYAFWGEAILMLPFAILGFIMKPLQL 129

Query: 177 KGFAPAESGKAQV----VASVSEGSEASNLND---HVSEDISDQASERSIKSIGESRFLN 229
           KGFAPA+S K Q     +A   + +EA N  D    +  D   Q+S     S   S  +N
Sbjct: 130 KGFAPAKSKKTQTAVETIAQEGQDTEALNGKDGALSMKADSKYQSSNTPSGSTISSNNVN 189

Query: 230 QLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVT 289
           Q S+F +D KVLL +KVYVVNVLGYI+YNFVIGAYSYWGPKAGYNIY+MS AD++FGG+T
Sbjct: 190 QFSRFFKDMKVLLCDKVYVVNVLGYISYNFVIGAYSYWGPKAGYNIYNMSKADLIFGGIT 249

Query: 290 IVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGE 349
           IVCGI+GTI+GG ILD M +TISNAFKLLS ATF GAI C +AFC  SLYGFLALF++GE
Sbjct: 250 IVCGILGTIAGGCILDLMTSTISNAFKLLSTATFFGAICCFSAFCFKSLYGFLALFSIGE 309

Query: 350 LLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTT 409
           LLVFATQ PVNYVCLH VKPSLR LSMA+STV+IHIFGDVPSSPLVGVLQD VNNWR+T 
Sbjct: 310 LLVFATQGPVNYVCLHCVKPSLRPLSMAMSTVAIHIFGDVPSSPLVGVLQDSVNNWRETA 369

Query: 410 LALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLE 456
           L LTSI FLAAGIWF+GIFL  +D+FNE+ E+  +   K+N  PLLE
Sbjct: 370 LILTSILFLAAGIWFIGIFLHGVDRFNEESEHHATRIDKSNTTPLLE 416

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554517|ref|XP_002518297.1| transporter, putative [Ricinus communis] gi|223542517|gb|EEF44057.1| transporter, putative [Ricinus communis]

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 294/425 (69%), Positives = 338/425 (79%), Gaps = 8/425 (1%)

Query: 42  FTVTQLVCSSHHCSQC-SHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA 100
           F V  LV S    S   S NPFRLIGVGLSVWT A  GCG S +FWSI ICRM VGVGEA
Sbjct: 106 FMVGLLVASPIFASLAKSFNPFRLIGVGLSVWTLAVVGCGFSINFWSITICRMFVGVGEA 165

Query: 101 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAIL 160
           SFISLAAPFIDDNAPV QKTAWL++FYMCIP+G A GYVYGG+VG H NWR+AFWGEAIL
Sbjct: 166 SFISLAAPFIDDNAPVAQKTAWLAIFYMCIPSGYAFGYVYGGLVGDHANWRWAFWGEAIL 225

Query: 161 MLPFAVLAFVIKPLQLKGFAPAESGKA--QVVASVSE-----GSEASNLNDHVSEDISDQ 213
           MLPF VL F++KPLQLKGFAPAES KA   V  +VSE      S     N  V E+++D+
Sbjct: 226 MLPFVVLGFLMKPLQLKGFAPAESKKALTSVETAVSEVQDTETSAGKGENLSVKEELNDK 285

Query: 214 ASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY 273
           + + S  S   +  LNQ S+F +D K LL EKVYVVNVLGYIAYNFVIGAYSYWGPKAGY
Sbjct: 286 SPKPSCMSRYATFSLNQFSRFIKDMKALLVEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY 345

Query: 274 NIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF 333
           NIY+M+NADM+FGG+TIVCGI+GT++GG+ILD M +TI NAFKLLS ATFLGAI C +AF
Sbjct: 346 NIYNMTNADMIFGGITIVCGILGTMAGGYILDYMTSTIPNAFKLLSVATFLGAIFCFSAF 405

Query: 334 CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSP 393
           C  S+Y FLALF +GELLVFATQ PVNY+CLH VKPS+R LSMA+S VSIHIFGDVPSSP
Sbjct: 406 CFKSMYVFLALFAIGELLVFATQGPVNYICLHCVKPSMRPLSMAMSIVSIHIFGDVPSSP 465

Query: 394 LVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKP 453
           LVGVLQD +NNWR T L LT+I F AA IWF+GIFLKS+DKFNE+ E+Q+++  ++N  P
Sbjct: 466 LVGVLQDKINNWRLTALILTAILFPAAFIWFIGIFLKSVDKFNEESEHQVAVTDRSNTTP 525

Query: 454 LLEGN 458
           LLEG 
Sbjct: 526 LLEGK 530

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496250|ref|XP_002264030.2| PREDICTED: protein spinster homolog 1-like [Vitis vinifera]

 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 290/414 (70%), Positives = 334/414 (80%), Gaps = 7/414 (1%)

Query: 50  SSHHCSQCSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPF 109
           S+ + S    NPFRLIGVGLSVWT A  GCG SF+FWSI ICRM VGVGEASFISLAAPF
Sbjct: 42  SNQNPSPNHVNPFRLIGVGLSVWTVAAVGCGFSFNFWSITICRMFVGVGEASFISLAAPF 101

Query: 110 IDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF 169
           IDDNAPV QKTAWL++FYMCIP+G+A+GYVYGG+VG H +WRYAFWGEAILMLPFA+L F
Sbjct: 102 IDDNAPVAQKTAWLAIFYMCIPSGIAVGYVYGGLVGDHFSWRYAFWGEAILMLPFAILGF 161

Query: 170 VIKPLQLKGFAPAESGKAQV----VASVSEGSEASNLND---HVSEDISDQASERSIKSI 222
           ++KPLQLKGFAPA+S K Q     +A   + +EA N  D    +  D   Q+S     S 
Sbjct: 162 IMKPLQLKGFAPAKSKKTQTAVETIAQEGQDTEALNGKDGALSMKADSKYQSSNTPSGST 221

Query: 223 GESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD 282
             S  +NQ S+F +D KVLL +KVYVVNVLGYI+YNFVIGAYSYWGPKAGYNIY+MS AD
Sbjct: 222 ISSNNVNQFSRFFKDMKVLLCDKVYVVNVLGYISYNFVIGAYSYWGPKAGYNIYNMSKAD 281

Query: 283 MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFL 342
           ++FGG+TIVCGI+GTI+GG ILD M +TISNAFKLLS ATF GAI C +AFC  SLYGFL
Sbjct: 282 LIFGGITIVCGILGTIAGGCILDLMTSTISNAFKLLSTATFFGAICCFSAFCFKSLYGFL 341

Query: 343 ALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV 402
           ALF++GELLVFATQ PVNYVCLH VKPSLR LSMA+STV+IHIFGDVPSSPLVGVLQD V
Sbjct: 342 ALFSIGELLVFATQGPVNYVCLHCVKPSLRPLSMAMSTVAIHIFGDVPSSPLVGVLQDSV 401

Query: 403 NNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLE 456
           NNWR+T L LTSI FLAAGIWF+GIFL  +D+FNE+ E+  +   K+N  PLLE
Sbjct: 402 NNWRETALILTSILFLAAGIWFIGIFLHGVDRFNEESEHHATRIDKSNTTPLLE 455

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485271|ref|XP_003612923.1| Spinster-like protein [Medicago truncatula] gi|355514258|gb|AES95881.1| Spinster-like protein [Medicago truncatula]

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 292/421 (69%), Positives = 335/421 (79%), Gaps = 9/421 (2%)

Query: 42  FTVTQLVCSSHHCSQC-SHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA 100
           F V  L+ S    S   SHNPFRLIGVGLSVWTFA AGCGSSFDFWSIAICRMLVGVGEA
Sbjct: 79  FMVGLLIASPIFASLAKSHNPFRLIGVGLSVWTFAVAGCGSSFDFWSIAICRMLVGVGEA 138

Query: 101 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAIL 160
           SFISLAAPFIDDNAPV QKTAWL+ FYMCIP G ALGYVYGG+VGS  NWR AFWGEAI 
Sbjct: 139 SFISLAAPFIDDNAPVAQKTAWLATFYMCIPAGTALGYVYGGLVGSQFNWRVAFWGEAIF 198

Query: 161 MLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIK 220
           MLPF +L F+IKPLQLKGF P ES + +   + +E + + N +D +  +  DQA  R  K
Sbjct: 199 MLPFPILGFLIKPLQLKGFGPMESKQTR---TSNETNVSENGDDGILAE--DQAFIRGSK 253

Query: 221 SIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN 280
               S+  NQ ++F  D + LL E+VYV+NVLGYIAYNFVIGAYSYWGPKAGY+IYHMSN
Sbjct: 254 L--TSKLGNQFTRFLNDMQELLHERVYVINVLGYIAYNFVIGAYSYWGPKAGYSIYHMSN 311

Query: 281 ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYG 340
           AD++FGG+TIVCGI GT++GG ILD+M +TISNAFK+LS ATFLGAI CL AF    L+G
Sbjct: 312 ADLLFGGITIVCGIFGTLAGGLILDKMSSTISNAFKILSGATFLGAIFCLVAFLFKGLFG 371

Query: 341 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD 400
           F+ LF+VGELL+FATQAPVNYV L  VKPSLR LSMAISTVSIHIFGDVPS+PLVGVLQD
Sbjct: 372 FIILFSVGELLIFATQAPVNYVSLRCVKPSLRPLSMAISTVSIHIFGDVPSAPLVGVLQD 431

Query: 401 HVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDS-KANMKPLLEGNG 459
           H+N+WRKT++ LTSIFFLAAG+WF+G FLKS D FN+D E   S  + +   KPLLEG  
Sbjct: 432 HINDWRKTSICLTSIFFLAAGVWFIGTFLKSDDLFNKDDEEDESTTTLRGVRKPLLEGIN 491

Query: 460 D 460
           D
Sbjct: 492 D 492

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531403|ref|XP_003534267.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 284/404 (70%), Positives = 327/404 (80%), Gaps = 8/404 (1%)

Query: 58  SHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP 117
           SHNPFRLIGVGLSVWT A AGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAP  
Sbjct: 96  SHNPFRLIGVGLSVWTLAIAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPDA 155

Query: 118 QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK 177
           QKTAWL+ FYMCIP G ALGYVYGG+VGS  NWR AFW EAILMLPF +L FVIKPLQLK
Sbjct: 156 QKTAWLATFYMCIPAGTALGYVYGGIVGSQFNWRVAFWVEAILMLPFPILGFVIKPLQLK 215

Query: 178 GFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQD 237
           GFAP ES K  +  + +  SE  + +D ++ED   QA  +  KS   S+  NQ + FS+D
Sbjct: 216 GFAPLES-KQTLTYTETNVSETGD-DDTLAED---QALLKGSKS--TSKLWNQFTIFSKD 268

Query: 238 TKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGT 297
            + LL ++VYV+NVLGYIAYNFVIGAYSYWGPKAGY+IYHM+NAD++FGG+TIVCGIVGT
Sbjct: 269 MQELLHDQVYVINVLGYIAYNFVIGAYSYWGPKAGYSIYHMNNADLLFGGITIVCGIVGT 328

Query: 298 ISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQA 357
           ++GG  LD++ +TISNAFKLLS ATFLGAI CL AF   SL GF+  F++GELL+F TQA
Sbjct: 329 LAGGLFLDRISSTISNAFKLLSGATFLGAIFCLIAFLFKSLSGFIVFFSMGELLIFVTQA 388

Query: 358 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFF 417
           PVNYV L  VKPSLR LSMAISTVSIH+FGDVPSSPLVGVLQDH+N+WRKT L LTSIFF
Sbjct: 389 PVNYVSLRCVKPSLRPLSMAISTVSIHVFGDVPSSPLVGVLQDHINDWRKTALCLTSIFF 448

Query: 418 LAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGNGDN 461
           LAA IWF+GIFLKS D +++D E Q +      + PLL+G+ D 
Sbjct: 449 LAAVIWFIGIFLKS-DVYDKDDEEQSATTRGGKLTPLLDGSSDT 491

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546730|ref|XP_003541776.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 282/422 (66%), Positives = 333/422 (78%), Gaps = 7/422 (1%)

Query: 42  FTVTQLVCSSHHCSQC-SHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA 100
           F V  LV S    S   S NPFRLIGVGLSVWT AT  CG SF+FWSI+ICRMLVGVGEA
Sbjct: 97  FMVGLLVASPIFASLAKSVNPFRLIGVGLSVWTLATLCCGFSFNFWSISICRMLVGVGEA 156

Query: 101 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAIL 160
           SFISLAAPFIDDNAPV QKTAWL++FYMCIP+G ALGYVYGG+VGSHL WRYAFW E++ 
Sbjct: 157 SFISLAAPFIDDNAPVTQKTAWLAIFYMCIPSGYALGYVYGGLVGSHLGWRYAFWVESLF 216

Query: 161 MLPFAVLAFVIKPLQLKGFAPAESGKA---QVVASVSEGSEASNLNDH---VSEDISDQA 214
           M+PFA+    +KPLQL+GF PA+S K    + VAS  +  EASN  D    +  ++ D++
Sbjct: 217 MVPFAISGLFMKPLQLRGFVPADSKKTLTPETVASGVQVMEASNGKDEPLSLKAELRDKS 276

Query: 215 SERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN 274
           S    KS   ++   + S+F  D K LL +KVYVVNVLGYIAYNFVIGAYSYWGPKAGYN
Sbjct: 277 SNDHSKSKSVTQIFEKFSRFLNDMKELLLDKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN 336

Query: 275 IYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC 334
           IYHM++AD++FGG+TIVCGIVGT++GGF+LD M  T+SNAFKLLS  TF+GA  C  AF 
Sbjct: 337 IYHMTDADLIFGGITIVCGIVGTLAGGFVLDYMSNTLSNAFKLLSITTFIGAAFCFGAFL 396

Query: 335 LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPL 394
             S+YGFLALF++GELLVFATQ PVNYVCL  VKPSLR LSMA+STV IHIFGDVPSSPL
Sbjct: 397 FRSMYGFLALFSIGELLVFATQGPVNYVCLRCVKPSLRPLSMAMSTVVIHIFGDVPSSPL 456

Query: 395 VGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPL 454
           VGVLQD++NNWR T L LTSI FLAAGIWF+GIFL ++D+F+ED E+Q+S   ++N  PL
Sbjct: 457 VGVLQDNINNWRTTALILTSILFLAAGIWFIGIFLHTVDRFDEDSEHQVSNVERSNTMPL 516

Query: 455 LE 456
           L+
Sbjct: 517 LQ 518

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519493|ref|XP_003528407.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  569 bits (1467), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 279/407 (68%), Positives = 328/407 (80%), Gaps = 8/407 (1%)

Query: 58  SHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP 117
           S NPFRLIGVGLSVWT AT  CG SF+FWSIA+CRMLVGVGEASFISLAAPFIDDNAPV 
Sbjct: 113 SVNPFRLIGVGLSVWTLATLCCGFSFNFWSIAVCRMLVGVGEASFISLAAPFIDDNAPVS 172

Query: 118 QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK 177
           QKTAWL++FYMCIP G A+GY+YGG+VG+H  WRY FW EAILM PFA+L FV+KPLQLK
Sbjct: 173 QKTAWLAIFYMCIPAGYAIGYIYGGLVGNHFGWRYGFWVEAILMSPFAILGFVMKPLQLK 232

Query: 178 GFAPAESGKAQVVASV-SEGSE--ASNLNDH---VSEDISDQASERSIKSIGESRFLNQL 231
           GFAP +S KA  + +V SE S+  ASN  D    +  +  D++S    +S  +   L+Q 
Sbjct: 233 GFAPTDSEKALTLGTVASEVSDVGASNGKDEALSLKAEFRDKSSHEPSRS--KCTILDQF 290

Query: 232 SQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIV 291
           S+F +D K LL +KV+VVNVLGYIAYNFVIGAYSYWGPKAGY+IY+M+NADMMFGG+T+V
Sbjct: 291 SRFLKDMKELLLDKVFVVNVLGYIAYNFVIGAYSYWGPKAGYSIYNMTNADMMFGGITVV 350

Query: 292 CGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELL 351
           CGI+GT++GGF+LD M  TISNAFKLLS ATF+G   C  AF   S YGFLALF VGELL
Sbjct: 351 CGILGTVAGGFVLDFMTNTISNAFKLLSIATFIGGACCFGAFLFKSQYGFLALFAVGELL 410

Query: 352 VFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA 411
           VFATQ PVNYVCLH VKPSLR LSMA+STV+IHIFGDVPSSPLVG++QD +NNWR T L 
Sbjct: 411 VFATQGPVNYVCLHCVKPSLRPLSMAMSTVAIHIFGDVPSSPLVGLMQDKINNWRTTALI 470

Query: 412 LTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGN 458
           LT+IFF AA IWF+GIFL S+D+FNED E+++S   + +  PLLE N
Sbjct: 471 LTTIFFPAAAIWFIGIFLPSVDRFNEDSEHEVSSVERTSTAPLLEEN 517

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	462
TAIR|locus:2179401	484	AT5G64500 "AT5G64500" [Arabido	0.482	0.460	0.641	1.5e-123
TAIR|locus:2066045	510	AT2G22730 "AT2G22730" [Arabido	0.800	0.725	0.614	3.3e-118
TAIR|locus:504954889	492	AT5G65687 "AT5G65687" [Arabido	0.816	0.766	0.532	4.6e-105
ZFIN|ZDB-GENE-060531-7	500	spns3 "spinster homolog 3 (Dro	0.222	0.206	0.324	5e-13
UNIPROTKB|Q9H2V7	528	SPNS1 "Protein spinster homolo	0.134	0.117	0.411	7.9e-12
UNIPROTKB|H3BMF4	573	SPNS1 "Spinster, isoform CRA_a	0.134	0.108	0.411	1.1e-11
FB|FBgn0086676	605	spin "spinster" [Drosophila me	0.374	0.285	0.237	1.2e-11
MGI|MGI:1920908	528	Spns1 "spinster homolog 1" [Mu	0.134	0.117	0.411	2e-11
UNIPROTKB|Q08DX7	528	SPNS1 "Protein spinster homolo	0.134	0.117	0.411	3.3e-11
UNIPROTKB|E2RBY9	561	SPNS1 "Uncharacterized protein	0.134	0.110	0.411	4.2e-11

TAIR|locus:2179401 AT5G64500 "AT5G64500" [Arabidopsis thaliana (taxid:3702)]

 Score = 742 (266.3 bits), Expect = 1.5e-123, Sum P(2) = 1.5e-123
 Identities = 145/226 (64%), Positives = 171/226 (75%)

Query:   232 SQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFXXXXXX 291
             S   +D K+LL +KVYV N+LGYIAYNFV+GAYSYWGPKAGYNIY M NADM+F      
Sbjct:   259 SAVMKDLKLLLVDKVYVTNILGYIAYNFVLGAYSYWGPKAGYNIYKMENADMIFGGVTVV 318

Query:   292 XXXXXXXXXXFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELL 351
                        ILD M ATISNAFK+LS +TF+GAI C  AFC  S+Y FLALF VGELL
Sbjct:   319 CGIVGTLSGGVILDYMDATISNAFKVLSVSTFIGAIFCFAAFCFKSMYAFLALFAVGELL 378

Query:   352 VFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA 411
             VFATQ PVN++ LH VKPSLR L+MA+STVSIHIFGDVPSSPLVGVLQD+VNNWR T+L 
Sbjct:   379 VFATQGPVNFIVLHCVKPSLRPLAMAMSTVSIHIFGDVPSSPLVGVLQDYVNNWRVTSLV 438

Query:   412 LTSIFFLAAGIWFVGIFLKSIDKFNEDGE-NQISLDSKANMKPLLE 456
             LT + F AA IW +GIFL S+D++NED E + ++ +S A   PLL+
Sbjct:   439 LTFVLFPAAAIWSIGIFLNSVDRYNEDSEPDAVTRESTA--APLLQ 482

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0046520 "sphingoid biosynthetic process" evidence=RCA

TAIR|locus:2066045 AT2G22730 "AT2G22730" [Arabidopsis thaliana (taxid:3702)]

 Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
 Identities = 236/384 (61%), Positives = 273/384 (71%)

Query:    63 RLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW 122
             RLIGVGL+VWT A  GCGSSF FW I +CRM VGVGEASFISLAAPFIDDNAP  QK AW
Sbjct:   128 RLIGVGLTVWTIAVLGCGSSFAFWFIVLCRMFVGVGEASFISLAAPFIDDNAPQEQKAAW 187

Query:   123 LSMFYMCIPTXXXXXXXXXXXXXSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPA 182
             L +FYMCIP+              H +WRYAFWGEA+LM PFAVL F++KPLQLKG   +
Sbjct:   188 LGLFYMCIPSGVALGYVYGGYVGKHFSWRYAFWGEAVLMAPFAVLGFLMKPLQLKG---S 244

Query:   183 ESGKAQXXXXXXXXXXXXNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLL 242
             E+ K               +++ +  D  + + E S  S   + F    + F++D KVL 
Sbjct:   245 ETLKNNNRL---------QVDNEIEHDQFEVSIETSKSSYANAVF-KSFTGFAKDMKVLY 294

Query:   243 QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFXXXXXXXXXXXXXXXXF 302
             +EKV+VVNVLGY++YNFVIGAYSYWGPKAGYNIY M NADM+F                F
Sbjct:   295 KEKVFVVNVLGYVSYNFVIGAYSYWGPKAGYNIYKMKNADMIFGAVTIICGIVGTLSGGF 354

Query:   303 ILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYV 362
             ILD++ ATI NAFKLLS ATFLGA+ C TAF L SLYGF+ALF +GELLVFATQAPVNYV
Sbjct:   355 ILDRVTATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGFIALFALGELLVFATQAPVNYV 414

Query:   363 CLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGI 422
             CLH VKPSLR LSMAISTV+IHIFGDVPSSPLVG++QDH+N+WRKTTL LTSI FLAA I
Sbjct:   415 CLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGIVQDHINSWRKTTLILTSILFLAAAI 474

Query:   423 WFVG-IFLKSIDKFNEDGENQISL 445
             WF+G I L S    +E    QI L
Sbjct:   475 WFIGKINLNSFYSNDESFLVQIKL 498

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:504954889 AT5G65687 "AT5G65687" [Arabidopsis thaliana (taxid:3702)]

 Score = 1040 (371.2 bits), Expect = 4.6e-105, P = 4.6e-105
 Identities = 210/394 (53%), Positives = 264/394 (67%)

Query:    60 NPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK 119
             NPF+LIGVGL+VWT A  GCG S++FW IA+ RM VGVGEASFISLAAP+IDD+APV +K
Sbjct:   108 NPFKLIGVGLTVWTIAVIGCGFSYNFWMIAVFRMFVGVGEASFISLAAPYIDDSAPVARK 167

Query:   120 TAWLSMFYMCIPTXXXXXXXXXXXXXSHLNWRYAFWGEAILMLPFAVLAFVIKP-LQLKG 178
               WL +FYMCIP              +HL WR+AF+ EAI M  F +L+F IKP  QLKG
Sbjct:   168 NFWLGLFYMCIPAGVALGYVFGGYIGNHLGWRWAFYIEAIAMAVFVILSFCIKPPQQLKG 227

Query:   179 FAPAESGKAQXXXXXXXXXXXXNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDT 238
             FA  +S K              ++      D   +AS+   K+  +S+  N +  F +D 
Sbjct:   228 FADKDSKKPST-----------SIETVAPTDA--EASQIKTKT-PKSK--NLVVLFGKDL 271

Query:   239 KVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFXXXXXXXXXXXXX 298
             K L  EKV++VNVLGYI YNFVIGAYSYWGPKAG+ IY M NADM+F             
Sbjct:   272 KALFSEKVFIVNVLGYITYNFVIGAYSYWGPKAGFGIYKMKNADMIFGGLTIICGIIGTL 331

Query:   299 XXXFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAP 358
                ++LD++ AT+SN FKLL+A+T LGA  C TAF + ++Y F+ALF VGE+L+FA QAP
Sbjct:   332 GGSYVLDRINATLSNTFKLLAASTLLGAAFCFTAFLMKNMYAFIALFAVGEILIFAPQAP 391

Query:   359 VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFL 418
             VN+VCLH V+P+LR LSMA STV IHI GDVPSSPL G +QDH+ NWRK+TL +TSI FL
Sbjct:   392 VNFVCLHCVRPNLRPLSMASSTVLIHILGDVPSSPLYGKMQDHLKNWRKSTLIITSILFL 451

Query:   419 AAGIWFVGIFLKSIDKFNEDGENQISLDSKANMK 452
             AA IW +GIF+ S+D+ NE  E+    + K   K
Sbjct:   452 AAIIWGIGIFMNSVDRSNEVSEDDEVEEDKLESK 485

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

ZFIN|ZDB-GENE-060531-7 spns3 "spinster homolog 3 (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 116 (45.9 bits), Expect = 5.0e-13, Sum P(3) = 5.0e-13
 Identities = 36/111 (32%), Positives = 50/111 (45%)

Query:    67 VGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW 122
             VGL +W   T G  SSF     FW +   R LVG GEAS+ ++A   I D     ++T  
Sbjct:   119 VGLVMWIVTTLG--SSFVRKSHFWVLVATRALVGTGEASYSTIAPTIIGDLFAGSKRTLM 176

Query:   123 LSMFYMCIPTXXXXXXXXXXXXXSHL-NWRYAFW-GEAILMLPFAVLAFVI 171
             +S FY+ IP                  +WR+A     A+  L   +L F+I
Sbjct:   177 ISFFYIFIPVGSGLGYIIGATVADATGDWRWALRVSPALGGLGLLLLVFLI 227

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

UNIPROTKB|Q9H2V7 SPNS1 "Protein spinster homolog 1" [Homo sapiens (taxid:9606)]

 Score = 118 (46.6 bits), Expect = 7.9e-12, Sum P(3) = 7.9e-12
 Identities = 28/68 (41%), Positives = 39/68 (57%)

Query:    68 GLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL 123
             G++ W+  T G  SSF     FW + + R LVGVGEAS+ ++A   I D     Q++  L
Sbjct:   131 GIAFWSLVTLG--SSFIPGEHFWLLLLTRGLVGVGEASYSTIAPTLIADLFVADQRSRML 188

Query:   124 SMFYMCIP 131
             S+FY  IP
Sbjct:   189 SIFYFAIP 196

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|H3BMF4 SPNS1 "Spinster, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 118 (46.6 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
 Identities = 28/68 (41%), Positives = 39/68 (57%)

Query:    68 GLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL 123
             G++ W+  T G  SSF     FW + + R LVGVGEAS+ ++A   I D     Q++  L
Sbjct:   176 GIAFWSLVTLG--SSFIPGEHFWLLLLTRGLVGVGEASYSTIAPTLIADLFVADQRSRML 233

Query:   124 SMFYMCIP 131
             S+FY  IP
Sbjct:   234 SIFYFAIP 241

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0086676 spin "spinster" [Drosophila melanogaster (taxid:7227)]

 Score = 123 (48.4 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
 Identities = 44/185 (23%), Positives = 77/185 (41%)

Query:   230 QLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMS--NADMM--- 284
             + + + QD K L++ + ++++  G+    FV GA ++WGP   Y    M   N +++   
Sbjct:   305 EATTYKQDIKALVRNRSFMLSTAGFTCVAFVAGALAWWGPSFIYLGMKMQPGNENIVQDD 364

Query:   285 ----FXXXXXXXXXXXXXXXXFILDQMGATISNAFKLLSAATFLGAISCLTAFCL---SS 337
                 F                F+   +      A  ++ A   L +   LT  CL   S+
Sbjct:   365 VAFNFGVITMLAGLLGVPLGSFLSQYLVKRYPTADPVICAFGLLVSAPLLTGACLLVNSN 424

Query:   338 LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGV 397
               G  AL   G+L +    A V  + L+ V P+ R+ + A   +  H  GD  S  LVG 
Sbjct:   425 SVGTYALIFFGQLALNLNWAIVADILLYVVVPTRRSTAEAFQILISHALGDAGSPYLVGA 484

Query:   398 LQDHV 402
             + + +
Sbjct:   485 ISEAI 489

GO:0007422 "peripheral nervous system development" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0045924 "regulation of female receptivity" evidence=IMP

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0035193 "larval central nervous system remodeling" evidence=IMP

GO:0045477 "regulation of nurse cell apoptotic process" evidence=IMP

GO:0012501 "programmed cell death" evidence=NAS

GO:0007619 "courtship behavior" evidence=NAS

GO:0008582 "regulation of synaptic growth at neuromuscular junction" evidence=IMP

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006897 "endocytosis" evidence=IMP

GO:0008333 "endosome to lysosome transport" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0048488 "synaptic vesicle endocytosis" evidence=IMP

GO:0045476 "nurse cell apoptotic process" evidence=IMP

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0007040 "lysosome organization" evidence=IMP

GO:0010001 "glial cell differentiation" evidence=IMP

GO:0008347 "glial cell migration" evidence=IMP

GO:0031982 "vesicle" evidence=IDA

GO:0090099 "negative regulation of decapentaplegic signaling pathway" evidence=IGI

MGI|MGI:1920908 Spns1 "spinster homolog 1" [Mus musculus (taxid:10090)]

 Score = 118 (46.6 bits), Expect = 2.0e-11, Sum P(3) = 2.0e-11
 Identities = 28/68 (41%), Positives = 39/68 (57%)

Query:    68 GLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL 123
             G++ W+  T G  SSF     FW + + R LVGVGEAS+ ++A   I D     Q++  L
Sbjct:   131 GIAFWSLVTLG--SSFIPREHFWLLLLTRGLVGVGEASYSTIAPTLIADLFVADQRSRML 188

Query:   124 SMFYMCIP 131
             S+FY  IP
Sbjct:   189 SIFYFAIP 196

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q08DX7 SPNS1 "Protein spinster homolog 1" [Bos taurus (taxid:9913)]

 Score = 117 (46.2 bits), Expect = 3.3e-11, Sum P(3) = 3.3e-11
 Identities = 28/68 (41%), Positives = 39/68 (57%)

Query:    68 GLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL 123
             G++ W+  T G  SSF     FW + + R LVGVGEAS+ ++A   I D     Q++  L
Sbjct:   131 GIAFWSLVTLG--SSFIPRERFWLLLLTRGLVGVGEASYSTIAPTLIADLFVADQRSRML 188

Query:   124 SMFYMCIP 131
             S+FY  IP
Sbjct:   189 SVFYFAIP 196

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|E2RBY9 SPNS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 117 (46.2 bits), Expect = 4.2e-11, Sum P(3) = 4.2e-11
 Identities = 28/68 (41%), Positives = 39/68 (57%)

Query:    68 GLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL 123
             G++ W+  T G  SSF     FW + + R LVGVGEAS+ ++A   I D     Q++  L
Sbjct:   164 GIAFWSLVTLG--SSFIPRERFWLLLLTRGLVGVGEASYSTIAPTLIADLFVADQRSRML 221

Query:   124 SMFYMCIP 131
             S+FY  IP
Sbjct:   222 SVFYFAIP 229

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FLG8	SPNS2_ARATH	No assigned EC number	0.6538	0.8311	0.7933	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	462
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-12
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	7e-12
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	8e-10
pfam03137	582	pfam03137, OATP, Organic Anion Transporter Polypep	1e-07
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-07
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	4e-05
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	1e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.002
TIGR00805	633	TIGR00805, oat, sodium-independent organic anion t	0.002
PRK03545	390	PRK03545, PRK03545, putative arabinose transporter	0.003

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 30/112 (26%), Positives = 52/112 (46%)

Query: 63  RLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW 122
           R++ +GL ++   +     +   W + + R L+G+G  +    AA  I +  P  ++   
Sbjct: 65  RVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRA 124

Query: 123 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL 174
           L +F      G  LG + GG++   L WR+ F   AIL L  A+L   +  L
Sbjct: 125 LGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRL 176

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 66.3 bits (162), Expect = 7e-12
 Identities = 58/324 (17%), Positives = 105/324 (32%), Gaps = 47/324 (14%)

Query: 63  RLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW 122
           R++ +GL ++         +   W + + R+L G+G  +    AA  I D  P  ++   
Sbjct: 63  RVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRA 122

Query: 123 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPA 182
           L +       G ALG + GG++ S   WR AF   AIL L  AVLA ++ P         
Sbjct: 123 LGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLP--------- 173

Query: 183 ESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLL 242
                                   S+         +         L              
Sbjct: 174 -------------------RPPPESKRPKPAEEAPAPLVPAWKLLLRD------------ 202

Query: 243 QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGG 301
                +  +L  + + F   A   + P     +  +S     +  G+  + G +G +  G
Sbjct: 203 ---PVLWLLLALLLFGFAFFALLTYLPLYQ-EVLGLSALLAGLLLGLAGLLGAIGRLLLG 258

Query: 302 FILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNY 361
            + D++G        LL        +  L +   SSL+  +AL  +G          +N 
Sbjct: 259 RLSDRLGRRRRLLLALLLLILAALGL-ALLSLTESSLWLLVALLLLG-FGAGLVFPALNA 316

Query: 362 VCLHSVKPSLRALSMAISTVSIHI 385
           +         R  +  +   +  +
Sbjct: 317 LVSDLAPKEERGTASGLYNTAGSL 340

Length = 346

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 56.5 bits (137), Expect = 8e-10
 Identities = 36/108 (33%), Positives = 49/108 (45%), Gaps = 1/108 (0%)

Query: 67  VGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMF 126
           VGL ++  +TA    S +   + I R L G G A  +   A  I D  P  ++   L + 
Sbjct: 33  VGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLM 92

Query: 127 YMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILML-PFAVLAFVIKP 173
              I  G  LG   GGV+   L WR  F   AIL L  F +LAF++  
Sbjct: 93  SAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140

Length = 141

>gnl|CDD|217384 pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP) family

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 59/280 (21%), Positives = 97/280 (34%), Gaps = 54/280 (19%)

Query: 93  MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV--------- 143
           +L G+G     +L   +IDDN        +L + +     G A+G++ G           
Sbjct: 147 LLRGIGATPIFTLGISYIDDNVKSKNSPLYLGILFTMAMFGPAIGFLLGSFCLRLYVDFG 206

Query: 144 ----VGSHLN-----WRYAFW----GEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVV 190
                   +      W  A+W        L L  + + F   P  L     A+     + 
Sbjct: 207 RVPTEDVIITPTDPRWVGAWWLGFLVCGGLAL-LSAIPFFFFPKTLPK---AQGRLESLD 262

Query: 191 ASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN 250
            S  +  + +       E  S +++   +K             F +  K LL    +++ 
Sbjct: 263 LSRPKAKDETR--KQAEEPKSGKSAPDFLK------------DFPKTLKRLLTNPTFMLV 308

Query: 251 VLGYIAYNFVIGAYSYWGPKAGYNIYHMS--NADMMFGGVTIVCGIVGTISGGFILDQMG 308
           VL  +  + VI  YS + PK     Y +S   A+ + G V +    VG + GG I+    
Sbjct: 309 VLAQVFESSVIAGYSTFLPKYLETQYGLSASYANFLIGVVNLPAAAVGILLGGLII---- 364

Query: 309 ATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVG 348
                 FKL    T  G         L SL  +L  F +G
Sbjct: 365 ----KKFKL----TARGMAKFAIFVILVSLAFYLPYFFIG 396

This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules). Thus, Tamai et al. initiated the current scheme of using digits for rat OATPs and letters for human ones. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the Swiss-Prot database) as belonging to the SLC21 family of transporters. Length = 582

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 57/312 (18%), Positives = 110/312 (35%), Gaps = 40/312 (12%)

Query: 63  RLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW 122
           R++   + +++  T  C  + +   + I R L G+G    +      + + AP   +   
Sbjct: 83  RVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTA 142

Query: 123 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFW-GEAILMLPFAVLAFV----IKPLQLK 177
           + + +   P G A+G    G +     WR  F+ G    +L   +L       I  L  K
Sbjct: 143 VGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK 202

Query: 178 GFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQD 237
                     + + +       +     + E  + Q ++RS+                  
Sbjct: 203 R-----PETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVF----------------- 240

Query: 238 TKVLLQE---KVYVVNVLGYIAYNFVIGAYSYWGPK----AGYNIYHMSNADMMFGGVTI 290
            K L Q    ++ V+  L Y      +   + W PK     G++     +     G +  
Sbjct: 241 -KALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFS----LSLAATGGALFN 295

Query: 291 VCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLA-LFTVGE 349
             G++G+I  G++ D++G  ++    LL A   +   S L +  L  L G +A  F  G 
Sbjct: 296 FGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGG 355

Query: 350 LLVFATQAPVNY 361
                    + Y
Sbjct: 356 QSGLYALMALFY 367

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 63/353 (17%), Positives = 115/353 (32%), Gaps = 70/353 (19%)

Query: 84  DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV 143
            F  + + R L G+    F S+AA       P  ++   L++ +  +     LG   G  
Sbjct: 100 SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTF 159

Query: 144 VGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLN 203
           +G    WR  F   A+L    A+LA +   L  K   P+E   +                
Sbjct: 160 LGQLFGWRATFLAIAVL----ALLALL---LLWKLLPPSEISGS---------------- 196

Query: 204 DHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGA 263
                                      L    +   VLL     +   L    +      
Sbjct: 197 -------------------LPGPLRTLLRLLRR-PGVLL---GLLATFLFMTGHF---AL 230

Query: 264 YSYWGPKAGYNIYHMSNAD-----MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLL 318
           Y+Y  P    ++   S +      + FG    + G +G + GG + D+         + L
Sbjct: 231 YTYIRPFLE-SVAGFSVSAVSLVLLAFG----IAGFIGNLLGGRLADR------GPRRAL 279

Query: 319 SAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHS-VKPSLRALSMA 377
            AA  L A++ L A   +     LAL  +       + A        + + P    L+ +
Sbjct: 280 IAALLLLALA-LLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGS 338

Query: 378 ISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLK 430
           ++  + ++ G    + L G++ D +      T  + +   L A +  +    K
Sbjct: 339 LNVAAFNL-GIALGAALGGLVLDALGYA--ATGWVGAALLLLALLLALLSARK 388

Length = 394

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 55/278 (19%), Positives = 94/278 (33%), Gaps = 54/278 (19%)

Query: 71  VWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS-----LAAPFIDDNAPVPQKTAWLSM 125
           +W   T     +  + S+ I R+L+G  EA F       +A+ F     P  ++   +S+
Sbjct: 68  IWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWF-----PASERATAVSI 122

Query: 126 FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAIL--MLPFAVLAFVIKPLQLKGFAPAE 183
           F      G  +G    G +  H +W++AF  E +L  +     L F+  P Q   +   E
Sbjct: 123 FNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEE 182

Query: 184 SGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQ 243
                V   ++E                      + K               Q  ++L  
Sbjct: 183 EKYIVVGGLLAEQQGKGP---------------STPKK-------------YQIKELLKD 214

Query: 244 EKVYVVNVLGYIAYNFVIGAYSYWGP-----KAGYNIYHMSNADMMFGGVTIVCGIVGTI 298
            +V+ +  LG    N  +G +  W P     + G +I            +  + G +G I
Sbjct: 215 RRVWGL-ALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAG----FMASLPGIVGFIGMI 269

Query: 299 SGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS 336
            GG + D     +    K L  A     I+ L    L 
Sbjct: 270 LGGRLSD----LLLRRGKSLVFARKTAIIAGLVLSLLM 303

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 32/176 (18%), Positives = 60/176 (34%), Gaps = 7/176 (3%)

Query: 251 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGA 309
            L +   +F       + P     +  +S A+  +   +  + GI+G + GG + D++G 
Sbjct: 181 ALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLG- 239

Query: 310 TISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP 369
                  LL     L A+  L      SL   L    +    +      +  +      P
Sbjct: 240 ---RRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPP 296

Query: 370 SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV 425
             R  +  +      + G      L G+L D    +    L L ++  LAA +  +
Sbjct: 297 EARGTASGLFNTFGSLGG-ALGPLLAGLLLDTG-GYGGVFLILAALALLAALLLLL 350

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 20/111 (18%), Positives = 38/111 (34%)

Query: 62  FRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTA 121
             L+ +GL +          +     + +  +L+G G             + AP   +  
Sbjct: 242 RLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGT 301

Query: 122 WLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK 172
              +F      G ALG +  G++     +   F   A L L  A+L  ++ 
Sbjct: 302 ASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233136 TIGR00805, oat, sodium-independent organic anion transporter

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 23/68 (33%), Positives = 36/68 (52%)

Query: 334 CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSP 393
           C +SL  FL LF     + F T  P+  V L  V P  R+L++ +  + + +FG +P+  
Sbjct: 514 CATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEERSLAIGLQWLCMRVFGTIPAPI 573

Query: 394 LVGVLQDH 401
           L G+L D 
Sbjct: 574 LFGLLIDV 581

The Organo Anion Transporter (OAT) Family (TC 2.A.60)Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. Length = 633

>gnl|CDD|179591 PRK03545, PRK03545, putative arabinose transporter; Provisional

 Score = 39.5 bits (93), Expect = 0.003
 Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 10/100 (10%)

Query: 79  CGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY 138
              +++F  + I R+ +    A F S+ A      AP  +K   LS+    + TG AL  
Sbjct: 91  SALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSL----LATGTALAM 146

Query: 139 V----YGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL 174
           V     G V+G +L WR  F   AI       L  +IK L
Sbjct: 147 VLGLPLGRVIGQYLGWRTTFL--AIGGGALITLLLLIKLL 184

Length = 390

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	462
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
KOG1330	493	consensus Sugar transporter/spinster transmembrane	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	100.0
PRK03699	394	putative transporter; Provisional	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	100.0
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
KOG2533	495	consensus Permease of the major facilitator superf	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	100.0
PRK11646	400	multidrug resistance protein MdtH; Provisional	100.0
KOG0569	485	consensus Permease of the major facilitator superf	100.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	100.0
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	100.0
PRK15403	413	multidrug efflux system protein MdtM; Provisional	100.0
KOG2532	466	consensus Permease of the major facilitator superf	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
PRK10504	471	putative transporter; Provisional	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
PRK10473	392	multidrug efflux system protein MdtL; Provisional	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	100.0
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	100.0
PRK09874	408	drug efflux system protein MdtG; Provisional	100.0
TIGR00897	402	2A0118 polyol permease family. This family of prot	100.0
PRK11195	393	lysophospholipid transporter LplT; Provisional	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
PRK03893	496	putative sialic acid transporter; Provisional	100.0
PRK12382	392	putative transporter; Provisional	100.0
PRK10133	438	L-fucose transporter; Provisional	100.0
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
PRK03633	381	putative MFS family transporter protein; Provision	99.98
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.98
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.98
PRK15011	393	sugar efflux transporter B; Provisional	99.97
PRK11043	401	putative transporter; Provisional	99.97
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.97
TIGR00805	633	oat sodium-independent organic anion transporter.	99.97
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.97
PRK10054	395	putative transporter; Provisional	99.97
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.97
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.97
PRK11010	491	ampG muropeptide transporter; Validated	99.97
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.97
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.97
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.97
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.97
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.97
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.96
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.96
PRK09528	420	lacY galactoside permease; Reviewed	99.96
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.96
KOG0254	513	consensus Predicted transporter (major facilitator	99.96
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.96
PRK11902	402	ampG muropeptide transporter; Reviewed	99.96
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.96
TIGR00901	356	2A0125 AmpG-related permease.	99.96
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.96
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.96
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.96
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.95
KOG2615	451	consensus Permease of the major facilitator superf	99.95
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.95
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.94
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.94
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.94
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.94
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.93
PTZ00207	591	hypothetical protein; Provisional	99.92
KOG3626	735	consensus Organic anion transporter [Secondary met	99.92
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.91
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.91
PRK09669	444	putative symporter YagG; Provisional	99.91
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.9
PRK10429	473	melibiose:sodium symporter; Provisional	99.9
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.9
PF13347	428	MFS_2: MFS/sugar transport protein	99.89
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.89
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.88
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.88
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.88
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.88
PRK09848	448	glucuronide transporter; Provisional	99.86
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.86
PRK11462	460	putative transporter; Provisional	99.86
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.86
COG2211	467	MelB Na+/melibiose symporter and related transport	99.81
KOG2563	480	consensus Permease of the major facilitator superf	99.79
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.69
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.67
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.66
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.66
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.57
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.57
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.56
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.54
PRK10642	490	proline/glycine betaine transporter; Provisional	99.53
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.47
PRK05122	399	major facilitator superfamily transporter; Provisi	99.45
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.44
PRK10054	395	putative transporter; Provisional	99.44
PRK09528	420	lacY galactoside permease; Reviewed	99.44
PRK11663	434	regulatory protein UhpC; Provisional	99.43
PRK15011	393	sugar efflux transporter B; Provisional	99.43
PRK10489	417	enterobactin exporter EntS; Provisional	99.43
PRK09874	408	drug efflux system protein MdtG; Provisional	99.42
PRK12382	392	putative transporter; Provisional	99.4
PRK03893	496	putative sialic acid transporter; Provisional	99.4
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.39
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.38
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.36
TIGR00900	365	2A0121 H+ Antiporter protein.	99.36
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.35
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.35
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.34
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.33
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.33
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.33
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.32
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.32
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.31
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.31
TIGR00893	399	2A0114 d-galactonate transporter.	99.3
PRK03633	381	putative MFS family transporter protein; Provision	99.3
PRK03545	390	putative arabinose transporter; Provisional	99.3
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.3
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	99.3
TIGR00891	405	2A0112 putative sialic acid transporter.	99.29
KOG3762	618	consensus Predicted transporter [General function	99.28
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.28
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.28
PRK03699	394	putative transporter; Provisional	99.27
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.27
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.27
PRK10504	471	putative transporter; Provisional	99.27
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.26
PRK09705	393	cynX putative cyanate transporter; Provisional	99.25
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.24
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.24
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.24
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.23
TIGR00895	398	2A0115 benzoate transport.	99.22
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.22
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.2
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.2
PRK10091	382	MFS transport protein AraJ; Provisional	99.2
PRK11043	401	putative transporter; Provisional	99.2
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.19
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.19
PLN00028	476	nitrate transmembrane transporter; Provisional	99.18
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.18
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.18
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.18
PRK12307	426	putative sialic acid transporter; Provisional	99.18
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.17
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.15
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.14
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.14
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.13
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.13
PRK09952	438	shikimate transporter; Provisional	99.12
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.12
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.11
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.09
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.09
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.07
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.07
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.05
PRK11010	491	ampG muropeptide transporter; Validated	99.05
PRK15075	434	citrate-proton symporter; Provisional	99.05
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.04
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.04
TIGR00898	505	2A0119 cation transport protein.	99.03
KOG2615	451	consensus Permease of the major facilitator superf	99.02
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.02
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.99
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.96
KOG3810	433	consensus Micronutrient transporters (folate trans	98.96
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.96
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.95
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.94
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.94
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.93
PRK11902	402	ampG muropeptide transporter; Reviewed	98.93
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.92
PRK10133	438	L-fucose transporter; Provisional	98.92
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.9
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.89
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.88
PTZ00207	591	hypothetical protein; Provisional	98.88
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.85
TIGR00805	633	oat sodium-independent organic anion transporter.	98.84
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.83
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.81
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.8
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.8
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.79
KOG3762	618	consensus Predicted transporter [General function	98.79
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.77
KOG0637	498	consensus Sucrose transporter and related proteins	98.76
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.76
TIGR00901	356	2A0125 AmpG-related permease.	98.74
PRK09848	448	glucuronide transporter; Provisional	98.71
KOG2532	466	consensus Permease of the major facilitator superf	98.7
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.7
KOG0569	485	consensus Permease of the major facilitator superf	98.7
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.69
COG0477	338	ProP Permeases of the major facilitator superfamil	98.69
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.61
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.59
PRK09669	444	putative symporter YagG; Provisional	98.59
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.59
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.57
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.56
PRK11462	460	putative transporter; Provisional	98.56
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.54
PRK10429	473	melibiose:sodium symporter; Provisional	98.51
COG2211	467	MelB Na+/melibiose symporter and related transport	98.47
PF13347	428	MFS_2: MFS/sugar transport protein	98.47
KOG2533	495	consensus Permease of the major facilitator superf	98.46
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.43
KOG0254	513	consensus Predicted transporter (major facilitator	98.34
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.29
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.28
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	98.25
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.23
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.16
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.15
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.12
KOG3880	409	consensus Predicted small molecule transporter inv	98.04
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.98
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.86
COG3202	509	ATP/ADP translocase [Energy production and convers	97.81
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.78
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.77
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.73
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.65
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.65
PF12832	77	MFS_1_like: MFS_1 like family	97.57
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.37
KOG2563	480	consensus Permease of the major facilitator superf	97.33
PF12832	77	MFS_1_like: MFS_1 like family	97.28
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.24
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.22
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.21
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.92
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.81
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	96.46
KOG0637	498	consensus Sucrose transporter and related proteins	96.14
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.0
COG0477	338	ProP Permeases of the major facilitator superfamil	95.92
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	95.9
KOG3626	735	consensus Organic anion transporter [Secondary met	95.74
PRK03612	521	spermidine synthase; Provisional	95.58
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	95.56
PRK03612	521	spermidine synthase; Provisional	95.11
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	94.54
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	94.49
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	94.01
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	93.69
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	92.72
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	91.44
KOG3097	390	consensus Predicted membrane protein [Function unk	89.81
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	89.54
KOG3098	461	consensus Uncharacterized conserved protein [Funct	89.25
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	88.93
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	88.39
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	84.89
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	81.8

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.2e-39  Score=284.40  Aligned_cols=374  Identities=16%  Similarity=0.136  Sum_probs=295.5

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML   94 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l   94 (462)
                      .|.++++   .++|.+|+|.  +.+.+.+++-++-.+.|.+ ||.+.|+.+..++++.++.+++++++++.+.+.+.-++
T Consensus        52 ~p~l~e~---~~lsk~~lG~--i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~l  126 (448)
T COG2271          52 MPALIED---GGLSKTQLGI--LGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVL  126 (448)
T ss_pred             cHHHHHh---cCCCHHHHHH--HHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            6756555   6799999777  9999999999999999999 99999999999999999999999999999999999999


Q ss_pred             hhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHH--HHhhcccchHHHHHHHHHHHHHHHHHHhhcc
Q 012500           95 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYG--GVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  172 (462)
Q Consensus        95 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~--~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  172 (462)
                      +|..+|..+|++...+..|+|++|||+..++++.+-++|..+.|++.  +.+..+.+||..|++.++++++.+++.++..
T Consensus       127 ng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~  206 (448)
T COG2271         127 NGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLL  206 (448)
T ss_pred             HHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999  8999889999999999999999999999988


Q ss_pred             ccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHH
Q 012500          173 PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL  252 (462)
Q Consensus       173 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (462)
                      +++|+....++-++...+                  ..+...++++++.         ......-.+.+++||.+|.+.+
T Consensus       207 rd~Pqs~GLP~ie~~~~d------------------~~e~~~~~~~~~~---------ls~~~i~~~YVL~Nk~iW~la~  259 (448)
T COG2271         207 RDRPQSEGLPPIEEYRGD------------------PLEIYEEEKENEG---------LTAWQIFVKYVLKNKLIWLLAL  259 (448)
T ss_pred             CCCccccCCCCHHHhhcC------------------chhhhhhhccCCC---------ccHHHHHHHHHHcChHHHHHHH
Confidence            777665443333222100                  0000000000000         0000113567899999999999


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHH-HHHHHHHHHHHH
Q 012500          253 GYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLL-SAATFLGAISCL  330 (462)
Q Consensus       253 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~-~~~~~~~~~~~~  330 (462)
                      +..+.+..-+++..|.|.|+.+..|.+.... ...+++-.++++|++++||++||+-+.++   ... ++..+....+..
T Consensus       260 a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR---~p~~~i~~~~i~~~~~  336 (448)
T COG2271         260 ANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRR---GPMALIFMLLITASLV  336 (448)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccc---chHHHHHHHHHHHHHH
Confidence            9999999999999999999999999997666 44488899999999999999999743211   333 333333333333


Q ss_pred             HHHHhh--hhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHH
Q 012500          331 TAFCLS--SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKT  408 (462)
Q Consensus       331 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~  408 (462)
                      .....+  +.+...++++..|+...+.+..+-....|..|++..|++.|+...+....|.+.+....|++.|.+| |...
T Consensus       337 ~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g-W~g~  415 (448)
T COG2271         337 LYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWG-WDGG  415 (448)
T ss_pred             HHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCC-Ccch
Confidence            333333  3466677777778887777666666777888889999999999877777799999999999999865 8788


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 012500          409 TLALTSIFFLAAGIWFV  425 (462)
Q Consensus       409 ~~~~~~~~~~~~~~~~~  425 (462)
                      |++..+..+++.++++.
T Consensus       416 Fi~~~~~a~l~~lll~~  432 (448)
T COG2271         416 FIVLSIAALLAILLLLP  432 (448)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88777776666655543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.2e-38  Score=279.98  Aligned_cols=346  Identities=18%  Similarity=0.192  Sum_probs=281.4

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML   94 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l   94 (462)
                      +|.+.++   ++.|..+.|.  ..+.|.++..+++|+...+ ||+.||++++..+.++.++++++++++||+.++++|++
T Consensus        36 Lp~iA~d---l~vs~~~aG~--lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~  110 (394)
T COG2814          36 LPPIAAD---LGVSEGAAGQ--LITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARAL  110 (394)
T ss_pred             hHHHHHH---cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            6655555   8999999777  9999999999999999999 99999999999999999999999999999999999999


Q ss_pred             hhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhcccc
Q 012500           95 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  174 (462)
Q Consensus        95 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  174 (462)
                      .|+..|.+++...++..+..|++||++++++...+..++.++|.+++.++.+.+|||++|++.+.++++..+..+..+| 
T Consensus       111 ~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP-  189 (394)
T COG2814         111 AGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP-  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998888888 


Q ss_pred             ccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHH
Q 012500          175 QLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGY  254 (462)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (462)
                       +++.  +++++..                                              .++..+++|+|.++...+..
T Consensus       190 -~~~~--~~~~~~~----------------------------------------------~~~~~~~l~~p~v~~~l~~t  220 (394)
T COG2814         190 -PSEI--SGSLPGP----------------------------------------------LRTLLRLLRRPGVLLGLLAT  220 (394)
T ss_pred             -CccC--CCCCCcc----------------------------------------------hhHHHHHhcCchHHHHHHHH
Confidence             1111  1111100                                              12344788999999999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHH-HHH
Q 012500          255 IAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC-LTA  332 (462)
Q Consensus       255 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~  332 (462)
                      ++.....+...+|+..++++..|.++... .....++++.++|+.++|++.|| +.+     +.+.....+..... .+.
T Consensus       221 ~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~-----~~l~~~~~l~a~~~l~l~  294 (394)
T COG2814         221 FLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR-----RALIAALLLLALALLALT  294 (394)
T ss_pred             HHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cch-----hHHHHHHHHHHHHHHHHH
Confidence            99989988999999999999999987666 45578899999999999999999 665     55555544444443 344


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHH
Q 012500          333 FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLAL  412 (462)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~  412 (462)
                      ...++.+...+...+.++..............+ .-|+.+..+.+++....|. |..+|..++|.+.|+.| +....+..
T Consensus       295 ~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nl-gia~GA~lGG~v~~~~g-~~~~~~~~  371 (394)
T COG2814         295 FTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNL-GIALGAALGGLVLDALG-YAATGWVG  371 (394)
T ss_pred             HhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhc-hHHHHHHH
Confidence            444455555555555555555444444444444 4467899999999888887 99999999999999965 76777777


Q ss_pred             HHHHHHHHHHHHH
Q 012500          413 TSIFFLAAGIWFV  425 (462)
Q Consensus       413 ~~~~~~~~~~~~~  425 (462)
                      +...+.+..+.+.
T Consensus       372 a~l~~~a~~~~~~  384 (394)
T COG2814         372 AALLLLALLLALL  384 (394)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666665555543

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=2.7e-36  Score=282.25  Aligned_cols=336  Identities=15%  Similarity=0.092  Sum_probs=256.3

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccc
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS  104 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~  104 (462)
                      ++.++.+.++  ..+.+.+++.+++++.|++ ||+|||+++..+.++.+++++.+++++|++.+++.|+++|++.+...+
T Consensus        39 ~~~s~~~~g~--~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~  116 (390)
T PRK03545         39 FHMQTAQVGL--MLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWS  116 (390)
T ss_pred             cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            7888888665  9999999999999999999 999999999999999999999999999999999999999999998899


Q ss_pred             cccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCccc
Q 012500          105 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAES  184 (462)
Q Consensus       105 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  184 (462)
                      ...+++.|++|+++|++++++...+.++|.+++|++++.+.+++|||+.|++.++++++..+..+...|+.+++     +
T Consensus       117 ~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~-----~  191 (390)
T PRK03545        117 ITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE-----H  191 (390)
T ss_pred             HHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----C
Confidence            99999999999999999999999999999999999999999999999999999988877766655555542110     0


Q ss_pred             cccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 012500          185 GKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAY  264 (462)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (462)
                       +..                                              .++.++.+|+|.++......++........
T Consensus       192 -~~~----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (390)
T PRK03545        192 -SGS----------------------------------------------LKSLPLLFRRPALVSLYLLTVVVVTAHFTA  224 (390)
T ss_pred             -cch----------------------------------------------HHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence             000                                              113456778888776665555555555555


Q ss_pred             HHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 012500          265 SYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLA  343 (462)
Q Consensus       265 ~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (462)
                      ..+.|.++++..|.++... .......+++++++++.+++.||+++|     ...............+....++.+..+.
T Consensus       225 ~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~  299 (390)
T PRK03545        225 YSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG-----FLLIAIALLLVCLLLLLPAANSEWHLSV  299 (390)
T ss_pred             HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchh-----HHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence            6778888888778776555 444667788899999999999999876     5444333333333333333444555555


Q ss_pred             HHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHHHHHHHHH
Q 012500          344 LFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  423 (462)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  423 (462)
                      ...+.+++.....+.......+.. |+.++++.|+.+...+. |..+||.+.|.+.|+.| ++..+...+.+.+++.+..
T Consensus       300 ~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~-g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~~~~~~~  376 (390)
T PRK03545        300 LSIFWGIAIMCIGLAMQVKVLKLA-PDATDVAMALFSGIFNI-GIGAGALLGNQVSLHLG-LSSIGYVGAALALAALVWS  376 (390)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHhC-CCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHHH
Confidence            555666665444444445555554 56889999998666555 88999999999999877 6666766666655544443

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=2.6e-36  Score=285.55  Aligned_cols=375  Identities=14%  Similarity=0.122  Sum_probs=260.0

Q ss_pred             HHHhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHH
Q 012500           13 GLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAIC   91 (462)
Q Consensus        13 ~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~   91 (462)
                      +..+|.+.++   ++.+..+.+.  +.+.+.+++.+++++.|++ ||+|||+++..+.++.+++.+++++++|++.+++.
T Consensus        43 ~~~~~~~~~~---~g~s~~~~g~--~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  117 (434)
T PRK11663         43 NAAMPEMLAD---LGLSRSDIGL--LATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALL  117 (434)
T ss_pred             HHhhHHHHHh---cCCCHHHHHH--HHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            3446755554   7888888655  9999999999999999999 99999999999999999999999999999999999


Q ss_pred             HHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhc
Q 012500           92 RMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  171 (462)
Q Consensus        92 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  171 (462)
                      |++.|++.|...+...+++.|++|+++|++++++.+.+.++|..+++.+++.+.+++|||+.|++.+++.++..+..++.
T Consensus       118 ~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~  197 (434)
T PRK11663        118 WVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWR  197 (434)
T ss_pred             HHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998999999999999999999999999999999999999999999999999999999988777666555555


Q ss_pred             cccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhH-HHHhhhhHHHHH
Q 012500          172 KPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDT-KVLLQEKVYVVN  250 (462)
Q Consensus       172 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  250 (462)
                      .||++++...++..++..+           .     +  +.+++.+ ++.       ...+   +.+ +..++++.++..
T Consensus       198 ~~~~p~~~~~~~~~~~~~~-----------~-----~--~~~~~~~-~~~-------~~~~---~~~~~~~~~~~~~~~~  248 (434)
T PRK11663        198 LRDKPQAMGLPSVGEWRHD-----------A-----L--ELAQQQE-GAG-------LSRK---EILTKYVLLNPYIWLL  248 (434)
T ss_pred             cCCCHhhcCCCCccccccc-----------c-----c--ccchhcc-ccC-------CChh---hhHHHHHhcChHHHHH
Confidence            5665433211111110000           0     0  0000000 000       0000   111 135678888888


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHH
Q 012500          251 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC  329 (462)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  329 (462)
                      .+..++.......+..|+|.|+.+.+|.+.... ...+...++.++++++.|++.||+.++.++................
T Consensus       249 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~  328 (434)
T PRK11663        249 SFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGS  328 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHH
Confidence            777777777777888899999988788886555 4456778889999999999999994332111111111111111111


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHH
Q 012500          330 LTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTT  409 (462)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~  409 (462)
                      +......+...........+++.............+..|++.|+++.|+.+...+. |.+++|.+.|++.|..| +...+
T Consensus       329 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~~p~~~g~l~~~~g-~~~~f  406 (434)
T PRK11663        329 LWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYL-GAALSGYPLAKVLEIWH-WTGFF  406 (434)
T ss_pred             HHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHH-HHHHhcccHHHHHHhcc-cHHHH
Confidence            11111222222222222223222211112233456667788999999999866666 99999999999999887 77777


Q ss_pred             HHHHHHHHHHHHHH
Q 012500          410 LALTSIFFLAAGIW  423 (462)
Q Consensus       410 ~~~~~~~~~~~~~~  423 (462)
                      ...+.+.+++.+..
T Consensus       407 ~~~~~~~~~~~~~~  420 (434)
T PRK11663        407 VVISIAAGISALLL  420 (434)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77776655554433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=2e-36  Score=289.16  Aligned_cols=370  Identities=16%  Similarity=0.109  Sum_probs=261.0

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhc-----cchhHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGS-----SFDFWSIA   89 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~   89 (462)
                      .|.+.++   ++.+..+.++  +.+.+.+++.+++++.|++ ||+|||+++..+.++++++.+..++     ++|++.++
T Consensus        52 ~~~i~~~---~~~s~~~~g~--~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  126 (467)
T PRK09556         52 QNDMIST---YGLSTTELGM--IGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMI  126 (467)
T ss_pred             hHHHHHh---cCCCHHHHHH--HHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence            5544444   7888888655  9999999999999999999 9999999999888888877766654     68999999


Q ss_pred             HHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhccc---chHHHHHHHHHHHHHHHH
Q 012500           90 ICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL---NWRYAFWGEAILMLPFAV  166 (462)
Q Consensus        90 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~---gwr~~f~~~~~~~~~~~~  166 (462)
                      +.|+++|++.+...|...++++||+|+++||+++++++.+.++|.++++.++.++.+..   +||..|.+.++++++..+
T Consensus       127 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i  206 (467)
T PRK09556        127 ALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGF  206 (467)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999987776643   699999998888887777


Q ss_pred             HHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhh-HHHHhhhh
Q 012500          167 LAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQD-TKVLLQEK  245 (462)
Q Consensus       167 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  245 (462)
                      +.+++.++++++.+..++++..         .+         ...++....++++       .   +..+. .++.+++|
T Consensus       207 ~~~~~~~~~p~~~~~~~~~~~~---------~~---------~~~~~~~~~~~~~-------~---~~~~~~~~~~l~~~  258 (467)
T PRK09556        207 IGLRYGSDSPEELGWGKAEEIF---------GE---------PISEEDKETESTD-------M---TKWQIFVEYVLKNP  258 (467)
T ss_pred             HHHHhCCCChhhcCCCChhhcc---------cC---------ccchhhhcccccc-------C---cHHHHHHHHHHcCh
Confidence            7766655543221111100000         00         0000000000000       0   00011 23468899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHH
Q 012500          246 VYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFL  324 (462)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  324 (462)
                      .+|...+..++......+...|+|.|+++.+|.+..+. .......++.+++.++.|+++||+++|     +........
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r-----~~~~~~~~~  333 (467)
T PRK09556        259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGR-----RALVACIAL  333 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----chHHHHHHH
Confidence            99999888888888888888999999999899886555 444667788999999999999999987     443332222


Q ss_pred             HHHHH-H-HHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHh--
Q 012500          325 GAISC-L-TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD--  400 (462)
Q Consensus       325 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~--  400 (462)
                      ..... + .....++.+...+..++.+++.............+..|++.++++.|+.+...+..|.+++|.+.|++.|  
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~  413 (467)
T PRK09556        334 ALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPT  413 (467)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccc
Confidence            22211 1 1122223333334444444333222222234455888889999999999877776577899999999999  


Q ss_pred             ----------hhcchhHHHHHHHHHHHHHHHHHH
Q 012500          401 ----------HVNNWRKTTLALTSIFFLAAGIWF  424 (462)
Q Consensus       401 ----------~~g~~~~~~~~~~~~~~~~~~~~~  424 (462)
                                ..+ |+..|.+..++.+++.+..+
T Consensus       414 ~~g~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        414 KNGTPIFGYTLTG-WAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             ccccccccccccC-hHHHHHHHHHHHHHHHHHHH
Confidence                      334 88888777666666555444

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.1e-37  Score=273.07  Aligned_cols=363  Identities=34%  Similarity=0.552  Sum_probs=279.6

Q ss_pred             hHHHHHHHHHHH-------hhhhh-hhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHH
Q 012500            4 CIHVLLCLIGLI-------LKRSM-KKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTF   74 (462)
Q Consensus         4 ~i~~~~~~~~~~-------~p~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~   74 (462)
                      ..+.++|+.+.+       +|... ..+..++.+++..|.  +.+.+.+.+.+++|+.|++ |||+||+++..|..+|.+
T Consensus        33 ~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gl--l~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~  110 (493)
T KOG1330|consen   33 LTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGL--LQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTL  110 (493)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccc--hhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHH
Confidence            445556666555       44444 334447889998777  9999999999999999999 999999999999999999


Q ss_pred             HHHhhhccchhHHHHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccc-hHHH
Q 012500           75 ATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYA  153 (462)
Q Consensus        75 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~  153 (462)
                      +.++++++..||++.++|.+.|+|.+...|+++++++|.+|.++|++++++++.+..+|..+|.+++..+.+..+ |||.
T Consensus       111 Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~a  190 (493)
T KOG1330|consen  111 AVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWA  190 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998776 9999


Q ss_pred             HHHHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhc
Q 012500          154 FWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQ  233 (462)
Q Consensus       154 f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (462)
                      |+..++++++++++.+++.+|..+..+++.+.+..                       .               .....+
T Consensus       191 f~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~-----------------------~---------------~~~~ts  232 (493)
T KOG1330|consen  191 FRGSAVLGVIVGLLVFLFVREPERGARDEVDGENK-----------------------M---------------VKPFTS  232 (493)
T ss_pred             EEeehHHHHHHHHHHHhhccCcccccccccccCCc-----------------------C---------------CCCccc
Confidence            99999999999999999987744321111100000                       0               011223


Q ss_pred             chhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh---CCC-cchhhhhhhHHHhhhhhhhhhhHHHhhhcc
Q 012500          234 FSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIY---HMS-NADMMFGGVTIVCGIVGTISGGFILDQMGA  309 (462)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~  309 (462)
                      .+++.+.+.+++.+....+.+....+....+..|.|.+....+   +.+ .....+..+...++.+|.+.+|.++||+.+
T Consensus       233 ~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~  312 (493)
T KOG1330|consen  233 VWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSR  312 (493)
T ss_pred             hHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHH
Confidence            4667888888888888888888888888888888888655443   323 234466788899999999999999999876


Q ss_pred             ccccchhHH-----H-HHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHH
Q 012500          310 TISNAFKLL-----S-AATFLGAISCLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTV  381 (462)
Q Consensus       310 ~~~~~~~~~-----~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (462)
                      +.++..+..     . .+....+....+....  .+.+..++++.+.-......+.+...+..+.+||+.|.++.++...
T Consensus       313 ~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~  392 (493)
T KOG1330|consen  313 IFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTV  392 (493)
T ss_pred             hcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHH
Confidence            544421111     1 1112222222222221  2344445555554455556777888899999999999999999998


Q ss_pred             HHhhhccccchhHHHHHHhhhcchh
Q 012500          382 SIHIFGDVPSSPLVGVLQDHVNNWR  406 (462)
Q Consensus       382 ~~~~~g~~~~~~~~g~l~~~~g~~~  406 (462)
                      +...+|.+.+|++.|.+.|+..+++
T Consensus       393 ~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  393 FEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             HHHHhccCCCcceehhHHHHhhCCC
Confidence            9999999999999999999986665

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=3.1e-36  Score=276.54  Aligned_cols=354  Identities=12%  Similarity=0.030  Sum_probs=253.6

Q ss_pred             HHHHHHHHhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhH
Q 012500            8 LLCLIGLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFW   86 (462)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~   86 (462)
                      ....++.++|.+.++   ++.++.+.++  ..+.+.+++.+++++.|++ ||+|||+++..+......+.+....++|++
T Consensus         6 ~~~~~~~~lp~i~~~---~~~s~~~~g~--~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~   80 (368)
T TIGR00903         6 IWVTFSPVLSLVAED---IDVSKEELGL--LAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYE   80 (368)
T ss_pred             HHHHHHhhHHHHHHH---hCcCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHH
Confidence            455677788866665   7888888665  9999999999999999999 999999887766555555443333347999


Q ss_pred             HHHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHH
Q 012500           87 SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV  166 (462)
Q Consensus        87 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~  166 (462)
                      .+++.|+++|++.+. .+.....++|++|+++|++++++.+.+..+|.++++++++.+.+++|||+.|++.++++++..+
T Consensus        81 ~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~  159 (368)
T TIGR00903        81 WLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGII  159 (368)
T ss_pred             HHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence            999999999999986 4556667799999999999999999999999999999999999999999999999998888888


Q ss_pred             HHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhH
Q 012500          167 LAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKV  246 (462)
Q Consensus       167 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (462)
                      +.++..||++++.+  +   ..                   +   .+                   +..+++++++++|.
T Consensus       160 ~~~~~lp~~p~~~~--~---~~-------------------~---~~-------------------~~~~~~~~ll~~~~  193 (368)
T TIGR00903       160 LVLAALPALPFQAA--E---GF-------------------G---FK-------------------DAVKEFGALAGRKD  193 (368)
T ss_pred             HHHHHcCCCCCCCC--C---Cc-------------------c---hH-------------------HHHHHHHHHHcChh
Confidence            77777787543210  0   00                   0   00                   00123667899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchhhhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHH
Q 012500          247 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  326 (462)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  326 (462)
                      +|...+..++.....+++.+|+|.|+++ .+.+........+..+.+   .+..++++||..|+..+. ........+.+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~~~~~~~l~~~~g---~~g~~~~~d~~~r~~~r~-~~~~~~~~~~a  268 (368)
T TIGR00903       194 LWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDIAGDAVALAILAG---LIGVAVIPDRVARAGLRS-IYIRAAALLIA  268 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHH---HHHHHHhhHHhhhhhhHH-HHHHHHHHHHH
Confidence            9999999999999999999999999976 456643323333344444   444578889887652211 22222222223


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchh
Q 012500          327 ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWR  406 (462)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~  406 (462)
                      ..........+....+...++.+++....++..+.+..|.+|++.|+++.|+.+...+. +++.+|.+.+.+..  + ..
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~-~~~~~~~~~~~~~~--~-~~  344 (368)
T TIGR00903       269 AFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRA-ISVALALAAMLFIS--S-AE  344 (368)
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHH-HHHHHHHHHHHHhc--C-HH
Confidence            32223232333334444555555555556666777888999999999999999866666 88888988888774  3 44


Q ss_pred             HHHHHHHHHHHHHHHH
Q 012500          407 KTTLALTSIFFLAAGI  422 (462)
Q Consensus       407 ~~~~~~~~~~~~~~~~  422 (462)
                      ..|...+...+++.+.
T Consensus       345 ~~f~~~~~~~~i~~~~  360 (368)
T TIGR00903       345 AYFTFLAILITIAFAI  360 (368)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5566665555544444

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=2.4e-36  Score=283.39  Aligned_cols=361  Identities=17%  Similarity=0.211  Sum_probs=252.1

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccc
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS  104 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~  104 (462)
                      ++.++.+.++  ..+.+.+++.+++++.|++ ||+|||+++..++++++++++++++++|++.+++.|+++|++.+...|
T Consensus        38 ~~~s~~~~g~--~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~  115 (412)
T TIGR02332        38 LGLSATMFGL--AATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLP  115 (412)
T ss_pred             cCCCHHHHHH--HHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHH
Confidence            7888888666  9999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             cccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhc------ccchHHHHHHHHHHHHHHHHHHhhccccccCC
Q 012500          105 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG  178 (462)
Q Consensus       105 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~------~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~  178 (462)
                      ....++.|++|+++|++++++++.+.++|.++++.+++++.+      ..|||+.|++.++++++..++.++++||++++
T Consensus       116 ~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~  195 (412)
T TIGR02332       116 GILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDK  195 (412)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCccc
Confidence            999999999999999999999999999999999999998764      46999999999998887777777777876543


Q ss_pred             CCC-ccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHH
Q 012500          179 FAP-AESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAY  257 (462)
Q Consensus       179 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (462)
                      .+- ++++++...    +..+....      +.++.... .++.  +    .   .....+++++ ++.+|...+..++.
T Consensus       196 ~~~l~~~~~~~~~----~~~~~~~~------~~~~~~~~-~~~~--~----~---~~~~~~~~~~-~~~~~~~~~~~~~~  254 (412)
T TIGR02332       196 AKWLDEEDKKALK----EMIDNDQL------TLEQPEGA-FAHA--A----M---PQRSMLREIF-TPAIMLYTLAYFCL  254 (412)
T ss_pred             CCCCCHHHHHHHH----HHHHhccc------cccccccc-cccc--c----c---cHHHHHHHhc-ChHHHHHHHHHHHH
Confidence            210 000000000    00000000      00000000 0000  0    0   0011244444 57778777777777


Q ss_pred             HHHHHHHHHHhhHHHHHH-hCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhH-HHHHHHHHHHHHHHHHH
Q 012500          258 NFVIGAYSYWGPKAGYNI-YHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKL-LSAATFLGAISCLTAFC  334 (462)
Q Consensus       258 ~~~~~~~~~~~p~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  334 (462)
                      ....+.+.+|+|.++++. .+.++... .......++.+++.++.|+++||+++|     +. .............+...
T Consensus       255 ~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r-----~~~~~~~~~~~~~~~~~~~~  329 (412)
T TIGR02332       255 TNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKER-----KHHTALPYLFAAAGWLLASA  329 (412)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCcc-----HHHHHHHHHHHHHHHHHHHh
Confidence            888888999999999873 35554433 445778888999999999999999876     43 22222222222222222


Q ss_pred             hhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHH
Q 012500          335 LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTS  414 (462)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~  414 (462)
                      .++....+...++..++.....+.......+..|++.|+++.|+.+...+. |++++|.+.|.+.|..|+|...+.+..+
T Consensus       330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~-g~~~~p~~~g~i~~~~g~~~~~~~~~~~  408 (412)
T TIGR02332       330 TDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNI-GSALSPFLIGILKDATGSFNSGLWFVAA  408 (412)
T ss_pred             cCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhh-hhhhhhhhcccccccCCCCchhHHHHHH
Confidence            222222222222222222222222223334567889999999999877776 9999999999999998888877766554


Q ss_pred             H
Q 012500          415 I  415 (462)
Q Consensus       415 ~  415 (462)
                      +
T Consensus       409 ~  409 (412)
T TIGR02332       409 L  409 (412)
T ss_pred             H
Confidence            4

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=2.5e-35  Score=282.89  Aligned_cols=336  Identities=10%  Similarity=0.016  Sum_probs=225.8

Q ss_pred             HHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHH--------HHHHHHHhhcccccccccccch
Q 012500           39 VLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWS--------IAICRMLVGVGEASFISLAAPF  109 (462)
Q Consensus        39 ~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~  109 (462)
                      .+...++..+++++.|++ ||+|||+++..++++++++++++++++|+++        ++++|+++|++.|..++...++
T Consensus        63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~  142 (490)
T PRK10642         63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIF  142 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHH
Confidence            477889999999999999 9999999999999999999999999999875        8899999999999999999999


Q ss_pred             hcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhh--------cccchHHHHHHHHHHHHHHHHHHhhccccccCCCCC
Q 012500          110 IDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAP  181 (462)
Q Consensus       110 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~--------~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~  181 (462)
                      +.|++|+++||++.++.+.+..+|..+|+.+...+.        .++|||++|++.++++++ .++.....||++++...
T Consensus       143 ~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~  221 (490)
T PRK10642        143 VAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQH  221 (490)
T ss_pred             HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHH
Confidence            999999999999999999888888888886665443        257999999997765543 33334445665443111


Q ss_pred             ccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhh-hHHHH-HHHHHHHHHH
Q 012500          182 AESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQE-KVYVV-NVLGYIAYNF  259 (462)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~  259 (462)
                      .++.++.            ++     +...       +++             ..++++++++ +..+. .....++...
T Consensus       222 ~~~~~~~------------~~-----~~~~-------~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (490)
T PRK10642        222 VDKLEQG------------DR-----EGLQ-------DGP-------------KVSFKEIATKHWRSLLTCIGLVIATNV  264 (490)
T ss_pred             HHhhhhh------------cc-----cccc-------ccc-------------cCCHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            0000000            00     0000       000             0123334432 22222 2222334456


Q ss_pred             HHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHH-HHH--HHHHh
Q 012500          260 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI-SCL--TAFCL  335 (462)
Q Consensus       260 ~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~  335 (462)
                      .++....|+|.|+++..+.+.... .......++.+++.++.|+++||+|||     +.+..+.....+ ...  .....
T Consensus       265 ~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr-----~~~~~~~~~~~~~~~~~~~~~~~  339 (490)
T PRK10642        265 TYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRR-----PFVILGSVALFVLAIPAFILINS  339 (490)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHHHHHHHHHHHHHHHHHhC
Confidence            677788899999988888775444 334556677888999999999999998     655544432222 111  11112


Q ss_pred             hhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHH
Q 012500          336 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  415 (462)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  415 (462)
                      ++....++..++.+++.+...+.......+.+|++.|+++.|+.+..... ++.++|.+.+++.+..+++...++...+.
T Consensus       340 ~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~-~g~~~p~i~g~l~~~~~~~~~~~~~~~~~  418 (490)
T PRK10642        340 NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVL-VAGLTPTLAAWLVESTQNLMMPAYYLMVV  418 (490)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence            22333344444445554444455556666789999999999986455555 56789999999988766554444444433


Q ss_pred             HHH
Q 012500          416 FFL  418 (462)
Q Consensus       416 ~~~  418 (462)
                      .++
T Consensus       419 ~~i  421 (490)
T PRK10642        419 AVI  421 (490)
T ss_pred             HHH
Confidence            333

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=2.1e-35  Score=278.01  Aligned_cols=380  Identities=16%  Similarity=0.179  Sum_probs=273.8

Q ss_pred             HHHHHHhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHH
Q 012500           10 CLIGLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSI   88 (462)
Q Consensus        10 ~~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l   88 (462)
                      ..++...|.+.++   ++.++.+.+.  +.+.+.++..+++++.|++ ||+|||+++..+.++.+++.+++++++|++.+
T Consensus        11 ~~~~~~~~~~~~~---~g~s~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (399)
T TIGR00893        11 ANLSFAAPMLQED---LGLSAAQYGY--VFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSL   85 (399)
T ss_pred             HhhhHhHHHHHHh---hCCChhhHHH--HHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHH
Confidence            4556667754444   6788888655  9999999999999999999 99999999999999999999999999999999


Q ss_pred             HHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHH
Q 012500           89 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLA  168 (462)
Q Consensus        89 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~  168 (462)
                      +++|++.|++.+...+....++.|++|+++|++++++.+....+|..+++.+++.+.++.+||+.|++.+++.++..+..
T Consensus        86 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  165 (399)
T TIGR00893        86 YILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLW  165 (399)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998887777776


Q ss_pred             hhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHH
Q 012500          169 FVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYV  248 (462)
Q Consensus       169 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (462)
                      ++..||++++.+..+++++.   ..   .+          ...++.+..++           .+....+.++.+++|.++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~---~~---~~----------~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~  218 (399)
T TIGR00893       166 LKFIPDPPQKAKWLTEEEKY---IV---VG----------GLLAEQQGKGP-----------STPKKYQIKELLKDRRVW  218 (399)
T ss_pred             hheecCCCCccccCCHHHHh---hc---ch----------hhccccccccc-----------cCCCccchHHHhcCHHHH
Confidence            66666543321110000000   00   00          00000000000           000123456778889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHH
Q 012500          249 VNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI  327 (462)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  327 (462)
                      ...+..++..........+.|.|+++..+.++... .......++.+++.++.|++.||++||.................
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (399)
T TIGR00893       219 GLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLV  298 (399)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Confidence            88888888888888889999999998888876554 44566778889999999999999998831100000111111111


Q ss_pred             HHHHHHH---hhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcc
Q 012500          328 SCLTAFC---LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN  404 (462)
Q Consensus       328 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~  404 (462)
                      .......   .++.+.......+.+++. ...+....+..+..|++.|+++.|+.+...+. |..++|.+.|.+.|..|+
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~~~~~i~g~l~~~~g~  376 (399)
T TIGR00893       299 LSLLMFATNYVNIPYAALALVALGFFGL-GAGAIGWALISDNAPGNIAGLTGGLINSLGNL-GGIVGPIVIGAIAATTGS  376 (399)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHhch-hhhhHHHHHHHhhcChhHHHHHHHHHHHHHHH-hhhhhhHHhhhhccCCCc
Confidence            1111111   122333333333333333 35667788888999999999999999766665 999999999999998876


Q ss_pred             hhHHHHHHHHHHHHHHHHH
Q 012500          405 WRKTTLALTSIFFLAAGIW  423 (462)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~  423 (462)
                      +...+...+.+.+++.+..
T Consensus       377 ~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       377 FAGALMVVAALALIGALSY  395 (399)
T ss_pred             hhHHHHHHHHHHHHHHHHH
Confidence            7777777666655544433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=5.1e-35  Score=273.06  Aligned_cols=345  Identities=12%  Similarity=-0.030  Sum_probs=253.5

Q ss_pred             HHHHhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHH
Q 012500           12 IGLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAI   90 (462)
Q Consensus        12 ~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~   90 (462)
                      .+.++|.+.++   ++.|+.+.++  ..+.+.+++.+++++.|++ ||+|||+++..+..+++++.+++++++|++.+++
T Consensus        28 ~~~~lp~i~~~---~~~s~~~~g~--~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~  102 (393)
T PRK09705         28 VGPLLPQLRQA---SGMSFSVAAL--LTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLS  102 (393)
T ss_pred             cchhHHHHHHH---hCCCHHHHHH--HHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHH
Confidence            44446755544   7888888655  9999999999999999999 9999999999999999999999999999999999


Q ss_pred             HHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhccc-chHHHHHHHHHHHHHHHHHHh
Q 012500           91 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAF  169 (462)
Q Consensus        91 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~  169 (462)
                      +|+++|++.+...+....++.|++| ++|+++++++..+...|..+++.+++.+.++. +||+.+.+.++..++..+..+
T Consensus       103 ~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~  181 (393)
T PRK09705        103 SALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWW  181 (393)
T ss_pred             HHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999997 88999999999999999999999999988875 899998877665443332222


Q ss_pred             hccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHH
Q 012500          170 VIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV  249 (462)
Q Consensus       170 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (462)
                      ...++.      +++++.. +                                             .+.++.++++..|.
T Consensus       182 ~~~~~~------~~~~~~~-~---------------------------------------------~~~~~~l~~~~~~~  209 (393)
T PRK09705        182 WQSARE------VASSHKT-T---------------------------------------------TTPVRVVFTPRAWT  209 (393)
T ss_pred             HHhcCC------CccccCC-C---------------------------------------------cCCcccccCHhHHH
Confidence            211111      0000000 0                                             00112345566666


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHH
Q 012500          250 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS  328 (462)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  328 (462)
                      ..+..++....+.....|.|.++++ .+.+.... ...+...++.++++++.+++.||+++|     +....+..+....
T Consensus       210 l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~-----~~~~~~~~l~~~~  283 (393)
T PRK09705        210 LGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRR-----KLLMLALVLQLVG  283 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccch-----HHHHHHHHHHHHH
Confidence            6666666677777888999999987 67776554 455778889999999999999999987     6655554444443


Q ss_pred             HHHHHHhh-hhHHHHHHHHHHHHHHHhccccceeeeeccCC-cchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchh
Q 012500          329 CLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVK-PSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWR  406 (462)
Q Consensus       329 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~  406 (462)
                      .......+ +....  ...+.+++.+...+.......+..+ ++++++..|+.+...+. +..++|.+.|++.|..|++.
T Consensus       284 ~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-~~~~gp~~~G~l~~~~g~~~  360 (393)
T PRK09705        284 FCGFIWLPLQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFI-IAGLAPWFSGVLRSISGNYL  360 (393)
T ss_pred             HHHHHHccchHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCch
Confidence            33322222 22222  2233455555555544445556665 47899999999766665 78899999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 012500          407 KTTLALTSIFFLAAGIW  423 (462)
Q Consensus       407 ~~~~~~~~~~~~~~~~~  423 (462)
                      ..+.+.+++.+...++.
T Consensus       361 ~~~~~~~~~~~~~~~~~  377 (393)
T PRK09705        361 MDWAFHALCVVGLMIIT  377 (393)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            87877776655544443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=6.2e-35  Score=277.01  Aligned_cols=367  Identities=12%  Similarity=0.043  Sum_probs=258.1

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHH-HHHHhhccccccc
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAI-CRMLVGVGEASFI  103 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~g~~~  103 (462)
                      ++.++.+.+.  ..+.+.++..+++++.|++ ||+|||++++.+.++.+++.++++++++++.+++ .|+++|++.+...
T Consensus        49 ~g~s~~~~~~--~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~  126 (455)
T TIGR00892        49 FQATYSETAW--ISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNF  126 (455)
T ss_pred             hCcchhHHHH--HHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhh
Confidence            7788888555  8899999999999999999 9999999999999999999999999999998875 5799999999777


Q ss_pred             ccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCcc
Q 012500          104 SLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAE  183 (462)
Q Consensus       104 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  183 (462)
                      +....++.++++ ++|+++.++.+.+..+|..++|.+++.+.+.+|||+.|++.+++.++..+..++..|+.......++
T Consensus       127 ~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  205 (455)
T TIGR00892       127 QPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKS  205 (455)
T ss_pred             hHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccc
Confidence            777888899996 8999999999999999999999999999999999999999998877666555555443211000000


Q ss_pred             ccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 012500          184 SGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGA  263 (462)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (462)
                      +.+.        ..+.  .  ...++.....  . .         +..++ ..+. +++++|.++......++.......
T Consensus       206 ~~~~--------~~~~--~--~~~~~~~~~~--~-~---------~~~~~-~~~~-~~~~~~~~~~~~~~~~l~~~~~~~  259 (455)
T TIGR00892       206 KSKE--------GLPP--D--GSTKKLSKKS--T-A---------EKINR-FLDF-SLFTHRGFLVYLSGNVIMFLGFFA  259 (455)
T ss_pred             cccc--------cCCC--C--Cccccccccc--h-h---------hhhhh-hcch-HHhcCchHHHHHHHHHHHHHHccc
Confidence            0000        0000  0  0000000000  0 0         00000 1112 467888888887777777777777


Q ss_pred             HHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 012500          264 YSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFL  342 (462)
Q Consensus       264 ~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (462)
                      ...++|.|.++ .+.++... ...++..++.++++++.|++.||...+..+ +..+..+........++....++.+..+
T Consensus       260 ~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~~~~~  337 (455)
T TIGR00892       260 PIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHV-QYLFSFALLFNGLTHLLCALAGDYTGLV  337 (455)
T ss_pred             hHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHH-HHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence            77888999876 57775554 444667788888999999999974321110 0122222222222223333345556666


Q ss_pred             HHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Q 012500          343 ALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGI  422 (462)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  422 (462)
                      ....+.+++.+...+.....+.+.+|+++++++.|+.+...+. |.+++|.+.|.+.|..++|...++..+++.+++.+.
T Consensus       338 i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l-g~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       338 IYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECC-AVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHH-HHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence            6667777777777777788888889999999999999766666 999999999999998877888887777665555444


Q ss_pred             HH
Q 012500          423 WF  424 (462)
Q Consensus       423 ~~  424 (462)
                      ..
T Consensus       417 ~~  418 (455)
T TIGR00892       417 LA  418 (455)
T ss_pred             HH
Confidence            33

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=2.8e-34  Score=271.74  Aligned_cols=358  Identities=13%  Similarity=0.044  Sum_probs=233.0

Q ss_pred             HHHHHHhhhhhhhccccccccccccc-hhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhH-
Q 012500           10 CLIGLILKRSMKKKKFLSLRKLAAGS-SVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFW-   86 (462)
Q Consensus        10 ~~~~~~~p~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~-   86 (462)
                      ..+++..|.+.++....+.++.+.+. ....+...++..+++++.|++ ||+|||+++..++++++++++++++++|+. 
T Consensus        39 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~  118 (432)
T PRK10406         39 YVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYET  118 (432)
T ss_pred             HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchh
Confidence            33455566444442111233333222 123344556666999999999 999999999999999999999999998874 


Q ss_pred             -------HHHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhh--------cccchH
Q 012500           87 -------SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG--------SHLNWR  151 (462)
Q Consensus        87 -------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~--------~~~gwr  151 (462)
                             .+++.|+++|++.|..++...++++|++|+++|+++.++.+.+...|..+++.+...+.        +.+|||
T Consensus       119 ~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr  198 (432)
T PRK10406        119 IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWR  198 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchH
Confidence                   58999999999999999999999999999999999999999988888888887765543        257999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhh
Q 012500          152 YAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQL  231 (462)
Q Consensus       152 ~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (462)
                      ++|++.++++++... .....||+++.    ++ + .                              .++          
T Consensus       199 ~~F~i~~~~~ll~~~-~~~~~~e~~~~----~~-~-~------------------------------~~~----------  231 (432)
T PRK10406        199 IPFALGAVLAVVALW-LRRQLDETSQQ----ET-R-A------------------------------LKE----------  231 (432)
T ss_pred             HHHHHHHHHHHHHHH-HHhcCCCCchH----HH-h-h------------------------------hcc----------
Confidence            999998776654322 22222332110    00 0 0                              000          


Q ss_pred             hcchhhHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhcc
Q 012500          232 SQFSQDTKVLLQEKVYVVNVLGYIAY-NFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGA  309 (462)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~  309 (462)
                         ..+++++++++..+...+...+. ....+.+..|+|.|+++..+.+..+. ....+..+...++.++.|+++||++|
T Consensus       232 ---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~gr  308 (432)
T PRK10406        232 ---AGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGR  308 (432)
T ss_pred             ---cccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence               01355677788777666554443 56677788999999988888876444 33455566667788888999999999


Q ss_pred             ccccchhHHHHHHHHHHHHHH-HH--HH-hhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhh
Q 012500          310 TISNAFKLLSAATFLGAISCL-TA--FC-LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHI  385 (462)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~-~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (462)
                      |     +.+.....+...... ..  .. .++....+....+..+..+...+....+..|.+|++.|+++.|+.+...+.
T Consensus       309 r-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~  383 (432)
T PRK10406        309 R-----TSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANA  383 (432)
T ss_pred             h-----HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHH
Confidence            8     555444333222211 11  11 112222222222222333333334456677889999999999999766555


Q ss_pred             hccccchhHHHHHHhhhcchhHHHHHHHHHHHHHHHHH
Q 012500          386 FGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  423 (462)
Q Consensus       386 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  423 (462)
                      +.+...|.+.+.+ +..|.+...+++.+...+++.+..
T Consensus       384 ~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~  420 (432)
T PRK10406        384 LFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVS  420 (432)
T ss_pred             HHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHH
Confidence            4344577777754 556666555555555544444433

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=4.1e-35  Score=285.98  Aligned_cols=394  Identities=15%  Similarity=0.126  Sum_probs=270.1

Q ss_pred             HHHhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHH
Q 012500           13 GLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAIC   91 (462)
Q Consensus        13 ~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~   91 (462)
                      +.++|.+..+   ++.+..+.++  +.+.+.++.+++++++|++ ||+|||+++++++++.++++++++++++++.++++
T Consensus       187 s~ilp~i~~~---~gls~~~~g~--l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~  261 (742)
T TIGR01299       187 GFVLPSAEKD---LCIPDSGKGM--LGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFC  261 (742)
T ss_pred             HHHHHHHHHH---hCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            3345644443   6777777544  9999999999999999999 99999999999999999999999999999999999


Q ss_pred             HHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcc-------------cchHHHHHHHH
Q 012500           92 RMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------------LNWRYAFWGEA  158 (462)
Q Consensus        92 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-------------~gwr~~f~~~~  158 (462)
                      |++.|++.|...+...+++.|++|+++|++.+++...+..+|.++++.++..+...             .+||+.+++.+
T Consensus       262 R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~  341 (742)
T TIGR01299       262 RLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCA  341 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888766543             36999998887


Q ss_pred             HHHHHHHHHHhhccccccCCCCCccccccccccccccccccccccc--cccc-----cccchhhhh-----hhhcc----
Q 012500          159 ILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLND--HVSE-----DISDQASER-----SIKSI----  222 (462)
Q Consensus       159 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~-----~~~~~----  222 (462)
                      +++++. ++..+++||+|++...+.+.++.  .+...++...+...  ...+     ..+.....+     ++...    
T Consensus       342 lp~ll~-ll~~~~lPESPrwL~~~gr~~eA--~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (742)
T TIGR01299       342 FPCVFA-IGALTFMPESPRFFLENGKHDEA--WMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQ  418 (742)
T ss_pred             HHHHHH-HHHHHHcCCCHHHHHHCCCHHHH--HHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhh
Confidence            765544 44556679998875332222111  11111111111000  0000     000000000     00000    


Q ss_pred             -ccccchhhhhcchhhHHHHhhhhHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHH----h------------------
Q 012500          223 -GESRFLNQLSQFSQDTKVLLQEKVYV---VNVLGYIAYNFVIGAYSYWGPKAGYNI----Y------------------  276 (462)
Q Consensus       223 -~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~----~------------------  276 (462)
                       ...+........+.+++.+++++..+   .+.+.+++..+.++++..|+|.++.+.    +                  
T Consensus       419 ~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (742)
T TIGR01299       419 RCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFN  498 (742)
T ss_pred             cchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccc
Confidence             00000111223344566666654433   444556777888999999999875441    0                  


Q ss_pred             -------------------CC-----C-----------------------------------------------------
Q 012500          277 -------------------HM-----S-----------------------------------------------------  279 (462)
Q Consensus       277 -------------------~~-----~-----------------------------------------------------  279 (462)
                                         +.     +                                                     
T Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  578 (742)
T TIGR01299       499 FTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLH  578 (742)
T ss_pred             cchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccc
Confidence                               00     0                                                     


Q ss_pred             -----------c-----chhhhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 012500          280 -----------N-----ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLA  343 (462)
Q Consensus       280 -----------~-----~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (462)
                                 .     .......+..++.+++.+++|+++||+|||     +.+..+.++.++++++....++....++
T Consensus       579 ~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr-----~~l~~~~~lsai~~ll~~~~~s~~~ll~  653 (742)
T TIGR01299       579 NKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRL-----RMLAGSMVLSCISCFFLSFGNSESAMIA  653 (742)
T ss_pred             cCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence                       0     001223455678899999999999999998     7777777777776666555555555555


Q ss_pred             HHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Q 012500          344 LFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGI  422 (462)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  422 (462)
                      +.++.+++.+..++....++.+.+|++.|++++|+.+...+. |.+++|++.+.+.+..  ...++++.+++.++++++
T Consensus       654 ~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rl-Gaiigp~i~g~L~~~~--~~~pf~i~a~~lll~~ll  729 (742)
T TIGR01299       654 LLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKA-AAVLGILIFGSFVGIT--KAAPILFASAALACGGLL  729 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHH
Confidence            566667777777777888889999999999999999766665 9999999999888742  345566555555444443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=1.8e-34  Score=271.97  Aligned_cols=354  Identities=16%  Similarity=0.128  Sum_probs=256.9

Q ss_pred             HHHhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHH
Q 012500           13 GLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAIC   91 (462)
Q Consensus        13 ~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~   91 (462)
                      +...|.+.++   ++.++.+.+.  ..+.+.++..+++++.|++ ||+|||+++..+.++..++.+++++++|++.+++.
T Consensus        35 ~~~~~~~~~~---~~~s~~~~g~--~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (406)
T PRK11551         35 GVAAPRMAQE---FGLDVAQMGW--AFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVA  109 (406)
T ss_pred             HHHHHHHHHH---hCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            4446655544   6788888555  9999999999999999999 99999999999999999999999999999999999


Q ss_pred             HHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhc
Q 012500           92 RMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  171 (462)
Q Consensus        92 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  171 (462)
                      |++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+||+.|++.+++.++..+...+.
T Consensus       110 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (406)
T PRK11551        110 RLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRW  189 (406)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999888999999999887766666666666


Q ss_pred             cccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHH
Q 012500          172 KPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNV  251 (462)
Q Consensus       172 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (462)
                      .||++++.++++  +..                        +.+..                 .+...+..+.+..+...
T Consensus       190 l~~~~~~~~~~~--~~~------------------------~~~~~-----------------~~~~~~~~~~~~~~~~~  226 (406)
T PRK11551        190 LPESRAFAQAAG--AGK------------------------QRAPV-----------------LRALFGEGRATATLLLW  226 (406)
T ss_pred             CCCChhHHhccC--cch------------------------hhhhh-----------------HHHHhhhhhhhHHHHHH
Confidence            676433211000  000                        00000                 00000000112222233


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHH
Q 012500          252 LGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  330 (462)
Q Consensus       252 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  330 (462)
                      ...++.....+....|.|.++++ .|.++... .......++.+++.++.|++.||+++|     +.+............
T Consensus       227 ~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~~~~~~~~~~~~~~  300 (406)
T PRK11551        227 ISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPR-----RVVLLIYAGILASLA  300 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHH
Confidence            33334444555667789999887 56665444 444667788899999999999999987     665554444444433


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHH
Q 012500          331 TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTL  410 (462)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  410 (462)
                      .....++.+.......+.+++.....+.......+.+|+++|+++.|+.+...+. |..++|.+.|.+.|+.+++...+.
T Consensus       301 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~~g~~~~g~l~~~~~~~~~~~~  379 (406)
T PRK11551        301 ALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRL-GSMAGPLLAGQLLALGRSTVGVIG  379 (406)
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhH-HHHHHhhhHhhhhccCCchHHHHH
Confidence            3333444444555555566666666666777888899999999999999766665 899999999999998766655555


Q ss_pred             HHHHHHHHHHH
Q 012500          411 ALTSIFFLAAG  421 (462)
Q Consensus       411 ~~~~~~~~~~~  421 (462)
                      ....+.+.+..
T Consensus       380 ~~~~~~~~~~~  390 (406)
T PRK11551        380 ASIPVILVAAL  390 (406)
T ss_pred             HHHHHHHHHHH
Confidence            55444444333

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=4.6e-34  Score=272.44  Aligned_cols=359  Identities=12%  Similarity=0.005  Sum_probs=242.4

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML   94 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l   94 (462)
                      .|.+.++   ++.+..+.+.  ..+.+.+++.+++++.|++ ||+|||+++..+.++++++.+++++++|++.+++.|++
T Consensus        59 ~~~l~~~---~gls~~~~g~--~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l  133 (476)
T PLN00028         59 LPIIRDN---LNLTKSDIGN--AGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFF  133 (476)
T ss_pred             HHHHHHH---cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            4544443   7888888655  8889999999999999999 99999999999999999999999999999999999999


Q ss_pred             hhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhh----c-----ccchHHHHHHHHHHHHHHH
Q 012500           95 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG----S-----HLNWRYAFWGEAILMLPFA  165 (462)
Q Consensus        95 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~----~-----~~gwr~~f~~~~~~~~~~~  165 (462)
                      +|++.+... ....+++|++|+++|++++++.....++|..+++.+.+.+.    +     ..|||+.|++.++++++..
T Consensus       134 ~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~  212 (476)
T PLN00028        134 IGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMG  212 (476)
T ss_pred             HHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHH
Confidence            999988644 45667899999999999999998877777777766554432    2     2589999999999888777


Q ss_pred             HHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhh
Q 012500          166 VLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEK  245 (462)
Q Consensus       166 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (462)
                      ++.+++.++.++.     +.++..+                 +       ...++           ++..+.+++.++++
T Consensus       213 l~~~~~~~~~p~~-----~~~~~~~-----------------~-------~~~~~-----------~~~~~~~~~~~~~~  252 (476)
T PLN00028        213 ILVLTLGQDLPDG-----NYRELKK-----------------S-------GTMPK-----------DSFSKVLRYGVTNY  252 (476)
T ss_pred             HHHHHHcCcCCCC-----chhhHHh-----------------c-------Ccccc-----------ccHHHHHHHHHcCc
Confidence            6666553322110     0000000                 0       00000           00012356677888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccc-hhHH-HHHH
Q 012500          246 VYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNA-FKLL-SAAT  322 (462)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-~~~~-~~~~  322 (462)
                      ++|...+..++.......+..+.|.|+.+.+|.++... .+.++..++.++++++.|+++||++||...+ ++.. ....
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~  332 (476)
T PLN00028        253 RTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQ  332 (476)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHH
Confidence            88877776665555556677889999988888886555 4557788999999999999999999864321 1222 2222


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhh-
Q 012500          323 FLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH-  401 (462)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~-  401 (462)
                      .+..+..+.....++.+...+.+++.+++.+...+.......+ ++++.++++.|+.+.     ++.+++.+.+++.+. 
T Consensus       333 ~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~-----~g~lg~~i~~~l~~~~  406 (476)
T PLN00028        333 TLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPF-VSRRSLGVISGLTGA-----GGNVGAVLTQLLFFTG  406 (476)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcc-cChhhchhhhhhhhc-----cccHHHHHHHHHHHhc
Confidence            2222222333333344444444445555554444444444443 456788888888742     334455566666553 


Q ss_pred             -hcchhHHHHHHHHHHHHHHHHHHHH
Q 012500          402 -VNNWRKTTLALTSIFFLAAGIWFVG  426 (462)
Q Consensus       402 -~g~~~~~~~~~~~~~~~~~~~~~~~  426 (462)
                       .++|...+++.+++.+++.++.+..
T Consensus       407 ~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        407 SSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             CCccHhhHHHHHHHHHHHHHHHHHhe
Confidence             2458888888877776666655543

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=1.1e-33  Score=267.62  Aligned_cols=335  Identities=11%  Similarity=0.047  Sum_probs=230.6

Q ss_pred             HHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhH--------HHHHHHHHhhcccccccccccchhc
Q 012500           41 EFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFW--------SIAICRMLVGVGEASFISLAAPFID  111 (462)
Q Consensus        41 ~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~  111 (462)
                      ...++..+++++.|++ ||+|||+++..+.++++++++++++++|+.        .++++|+++|++.|..++....++.
T Consensus        72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~  151 (438)
T PRK09952         72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAV  151 (438)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence            4456678899999999 999999999999999999999999999987        5888999999999999999999999


Q ss_pred             ccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhh--------cccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCcc
Q 012500          112 DNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAE  183 (462)
Q Consensus       112 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~--------~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  183 (462)
                      |++|+++|++..+..+.+..+|.+++..+...+.        +++|||++|++.+++.++. +......||++++.+.++
T Consensus       152 e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~~~~~~  230 (438)
T PRK09952        152 ESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEFEQQQH  230 (438)
T ss_pred             HhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHHh
Confidence            9999999999999999999999999987776654        3579999999887765332 222222244322110000


Q ss_pred             ccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHH-HHHHHHHHHH
Q 012500          184 SGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL-GYIAYNFVIG  262 (462)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  262 (462)
                      +.++                              .+++             ....+.++++++.+.... ..++.....+
T Consensus       231 ~~~~------------------------------~~~~-------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  267 (438)
T PRK09952        231 EQAA------------------------------AKKR-------------IPVIEALLRHPGAFLKIIALRLCELLTMY  267 (438)
T ss_pred             hccc------------------------------cccc-------------CCHHHHHHHchHHHHHHHHHHHHHHHHHH
Confidence            0000                              0000             001223445665555543 3444455666


Q ss_pred             HHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHH---hh-h
Q 012500          263 AYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC---LS-S  337 (462)
Q Consensus       263 ~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~  337 (462)
                      ....|.|.|+++..|.+.... .......+..+++.++.|+++||++||     +.+..+..+..........   .. +
T Consensus       268 ~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr-----~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (438)
T PRK09952        268 IVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRR-----RVYITGALIGTLSAFPFFMALEAQSI  342 (438)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHHHHHHHHHHHHHcCCh
Confidence            777899999988888775433 233445666778888999999999998     6655444433332221111   11 2


Q ss_pred             hHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhc-chhHHHHHHHHHH
Q 012500          338 LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN-NWRKTTLALTSIF  416 (462)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~  416 (462)
                      .+..+...++.+++.+...+....+..|.+|++.|+++.++.+.....+++.++|.+.+++.|..+ +|...+.+..++.
T Consensus       343 ~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~  422 (438)
T PRK09952        343 FWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGC  422 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            223333344445555555666677888889999999999997655554588899999999998653 4666666666665


Q ss_pred             HHHHHHHH
Q 012500          417 FLAAGIWF  424 (462)
Q Consensus       417 ~~~~~~~~  424 (462)
                      +++.+..+
T Consensus       423 ~i~~v~~~  430 (438)
T PRK09952        423 LISAMTAL  430 (438)
T ss_pred             HHHHHHHH
Confidence            55544443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=1.2e-33  Score=268.74  Aligned_cols=366  Identities=13%  Similarity=0.054  Sum_probs=245.6

Q ss_pred             ccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccc----hhHHHHHHHHHhhccccc
Q 012500           27 SLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEAS  101 (462)
Q Consensus        27 ~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~  101 (462)
                      +.++.+.+.  ..+.+.++..+++++.|++ ||+|||+++..+.++.+++.+.+++++    +++.+++.|++.|++.+.
T Consensus        59 g~s~~~~g~--~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~  136 (452)
T PRK11273         59 GFSRGDLGF--ALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGM  136 (452)
T ss_pred             CCCHHHHHH--HHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhc
Confidence            677777555  9999999999999999999 999999999999999999999888763    788899999999999998


Q ss_pred             ccccccchhcccCCCCCchhHHHHHHhhhhhhhh-hhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccccCCCC
Q 012500          102 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVA-LGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA  180 (462)
Q Consensus       102 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~  180 (462)
                      ..+.....+.|++|+++|++++++++.+.++|.. .+|+++..+....+||+.|++.+++.++..++.+++.||++++..
T Consensus       137 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~  216 (452)
T PRK11273        137 GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCG  216 (452)
T ss_pred             cchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcC
Confidence            8888888899999999999999999999999864 455554444444599999999998887777777777776543321


Q ss_pred             Cccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhh-HHHHhhhhHHHHHHHHHHHHHH
Q 012500          181 PAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQD-TKVLLQEKVYVVNVLGYIAYNF  259 (462)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  259 (462)
                      .+++++..  +       +..+      +..+    ++.++       .+.   .+. .+.+++++.+|...+..++.+.
T Consensus       217 ~~~~~~~~--~-------~~~~------~~~~----~~~~~-------~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~  267 (452)
T PRK11273        217 LPPIEEYK--N-------DYPD------DYNE----KHEQE-------LTA---KQIFMQYVLPNKLLWYIAIANVFVYL  267 (452)
T ss_pred             CCChhhhh--h-------cccc------cccc----ccCCC-------ccH---HHHHHHHHHcChHHHHHHHHHHHHHH
Confidence            11110000  0       0000      0000    00000       000   011 2246788999988888777777


Q ss_pred             HHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHH--hh
Q 012500          260 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC--LS  336 (462)
Q Consensus       260 ~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  336 (462)
                      ..+....|.|.|+++..|.+.... ....+..++.+++.++.|+++||++++++.  ........+..........  ..
T Consensus       268 ~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~--~~~~~~~~l~~~~~~~~~~~~~~  345 (452)
T PRK11273        268 LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG--ATGVFFMTLVTIATIVYWLNPAG  345 (452)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc--hHHHHHHHHHHHHHHHHHHhccc
Confidence            778888999999999888775444 344566788888999999999999543111  1111111221111111111  12


Q ss_pred             hhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHH
Q 012500          337 SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIF  416 (462)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  416 (462)
                      +.+.........+...............+..|++.|+++.|+.+...+..+...+|.+.|.+.|+.| |...|...+.+.
T Consensus       346 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~~~f~~~~~~~  424 (452)
T PRK11273        346 NPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGS  424 (452)
T ss_pred             ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-chHHHHHHHHHH
Confidence            2222233333333332222222233456888899999999999766666234457999999999987 777777777665


Q ss_pred             HHHHHHHHHH
Q 012500          417 FLAAGIWFVG  426 (462)
Q Consensus       417 ~~~~~~~~~~  426 (462)
                      +++++....+
T Consensus       425 ~~~~~~~~~~  434 (452)
T PRK11273        425 ILAVILLIVV  434 (452)
T ss_pred             HHHHHHHHHH
Confidence            5555544433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=2.2e-33  Score=261.72  Aligned_cols=327  Identities=14%  Similarity=0.106  Sum_probs=243.0

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccc
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS  104 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~  104 (462)
                      ++.++.+.+.  ..+.+.++..+++++.|++ ||+|||+++..+.++.+++.+++++++|++.+++.|+++|++.+...+
T Consensus        50 ~g~s~~~~g~--~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~  127 (394)
T PRK10213         50 LGISEGVAGQ--SVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWA  127 (394)
T ss_pred             cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHH
Confidence            7888888666  8899999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             cccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCccc
Q 012500          105 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAES  184 (462)
Q Consensus       105 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  184 (462)
                      ...+++.|++|+++|++++++...+.++|..++|.+++.+.+++|||+.|++.++++++..+......||.+++     +
T Consensus       128 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~-----~  202 (394)
T PRK10213        128 MSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE-----P  202 (394)
T ss_pred             HHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc-----c
Confidence            99999999999999999999999999999999999999999999999999998877665554444334542110     0


Q ss_pred             cccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 012500          185 GKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAY  264 (462)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (462)
                      ++ .                                              .++.++.+++|.++...+..++........
T Consensus       203 ~~-~----------------------------------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  235 (394)
T PRK10213        203 SH-Q----------------------------------------------KQNTFRLLQRPGVMAGMIAIFMSFAGQFAF  235 (394)
T ss_pred             cc-c----------------------------------------------hhHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            00 0                                              012345678888887766555555555555


Q ss_pred             HHHh-hHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 012500          265 SYWG-PKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFL  342 (462)
Q Consensus       265 ~~~~-p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (462)
                      ..+. |.+. +..|.++... .......++.+++.++.+++.||.+++     .............+.+....++.+...
T Consensus       236 ~~~~~p~~~-~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~-----~l~~~~~~~~~~~~~l~~~~~~~~~~~  309 (394)
T PRK10213        236 FTYIRPVYM-NLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL-----ALAGAPLVLAVSALVLTLWGSDKIVAT  309 (394)
T ss_pred             HHHHHHHHH-HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh-----HHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            5665 5554 5567776554 334566778888999999999985433     333333332333333333344555556


Q ss_pred             HHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHH
Q 012500          343 ALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  415 (462)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  415 (462)
                      ....+.+++.+...+.....+.+..| ++++++.+......+ +|..+||.+.|++.|..| +...+...+..
T Consensus       310 ~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-lg~~~G~~l~G~l~~~~g-~~~~~~~~~~~  379 (394)
T PRK10213        310 GVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQ-LANTCGAAIGGYALDNIG-LTSPLMLSGTL  379 (394)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccC-hhhHHHHHHHH
Confidence            66677777777777767767777776 445666776644444 488999999999999876 44445544433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=2.2e-33  Score=261.49  Aligned_cols=345  Identities=14%  Similarity=0.128  Sum_probs=248.3

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML   94 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l   94 (462)
                      +|.+.++   ++.++.+.+.  ..+.+.+++.+++++.|++ ||+|||+++..+.++.+++.+++++++|++.+++.|++
T Consensus        26 l~~~~~~---~g~s~~~~g~--~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l  100 (382)
T PRK10091         26 LTELAHD---VGISIPAAGH--MISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLV  100 (382)
T ss_pred             hHHHHHH---cCCCHHHHhH--HHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            5544443   7888888555  9999999999999999999 99999999999999999999999999999999999999


Q ss_pred             hhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhcccc
Q 012500           95 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  174 (462)
Q Consensus        95 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  174 (462)
                      +|++.+...+....++.|++|+++|++++++...+..+|..++|++++.+.+..+||+.|++.+++.++..+..++..||
T Consensus       101 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~  180 (382)
T PRK10091        101 SGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPD  180 (382)
T ss_pred             HHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999988888888999999999999999999999999999999999999998999999999998877766665555565


Q ss_pred             ccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHH
Q 012500          175 QLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGY  254 (462)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (462)
                      .+++      ++..                        .                     .+.. +.++++..+......
T Consensus       181 ~~~~------~~~~------------------------~---------------------~~~~-~~~~~~~~~~~~~~~  208 (382)
T PRK10091        181 IRDE------AKGG------------------------L---------------------REQF-HFLRSPAPWLIFAAT  208 (382)
T ss_pred             CCcc------cccC------------------------H---------------------HHHH-HHhcChHHHHHHHHH
Confidence            3210      0000                        0                     0011 234566666555544


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHH
Q 012500          255 IAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF  333 (462)
Q Consensus       255 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (462)
                      .+..........+.+.++.+..|.++... .+.....++.++++++.+++.||++++     +.+.....+..+..+...
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~-----~~~~~~~~~~~i~~~~~~  283 (382)
T PRK10091        209 MFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPL-----RIAAVTDFIIVLALLMLF  283 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCch-----hHHHHHHHHHHHHHHHHH
Confidence            44444444555667778887778886555 445777888999999999999999987     666555554444433332


Q ss_pred             -HhhhhHHHHHHHHHHHHHHHhccccceeeee-ccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHH
Q 012500          334 -CLSSLYGFLALFTVGELLVFATQAPVNYVCL-HSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA  411 (462)
Q Consensus       334 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  411 (462)
                       ..++.+......++.+.+.....++...... +..+++.++.+.  .+...+. |..+||.+.|++.|..++|+..+..
T Consensus       284 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-g~~~Gp~~~G~l~~~~~~~~~~~~~  360 (382)
T PRK10091        284 FFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNL-GSAIGAYCGGMMLTLGLAYNYVALP  360 (382)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHH-HHHHHHHHhHHHHHcccCcchHHHH
Confidence             2233333334444444444333333332233 333445555543  3344454 9999999999999987778888887


Q ss_pred             HHHHHHHHHHHHHH
Q 012500          412 LTSIFFLAAGIWFV  425 (462)
Q Consensus       412 ~~~~~~~~~~~~~~  425 (462)
                      .+...++...+...
T Consensus       361 ~~~~~~~~~~~~~~  374 (382)
T PRK10091        361 AALLSFAAMSSLLL  374 (382)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77665555554443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=8e-34  Score=265.25  Aligned_cols=347  Identities=10%  Similarity=-0.019  Sum_probs=256.5

Q ss_pred             HHHhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHH
Q 012500           13 GLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAIC   91 (462)
Q Consensus        13 ~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~   91 (462)
                      +...|.+.++   ++.++.+.+.  ..+.+.++..+++++.|++ ||+|||+++..+.++.+++.+++++++|++.++++
T Consensus        23 ~~~~~~~~~~---~~~s~~~~g~--~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (377)
T TIGR00890        23 TLLAPPLGRY---FGVGVTAVAI--WFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLT   97 (377)
T ss_pred             hhHHHHHHHH---hCCCHHHHHH--HHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3446644444   7888888655  9999999999999999999 99999999999999999999999999999999999


Q ss_pred             HHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhc
Q 012500           92 RMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  171 (462)
Q Consensus        92 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  171 (462)
                      |++.|++.+...+.....+.|++| |+|+++.++...+.++|..+++++.+.+.+..|||+.|++.++++++..+..+++
T Consensus        98 ~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  176 (377)
T TIGR00890        98 YGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFL  176 (377)
T ss_pred             HHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999888888888999997 7899999999999999998887777777778899999999999888877777666


Q ss_pred             cccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHH
Q 012500          172 KPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNV  251 (462)
Q Consensus       172 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (462)
                      .|+++++.    +++..                    +.+++                     ..+.++.++++.++...
T Consensus       177 ~~~~~~~~----~~~~~--------------------~~~~~---------------------~~~~~~~~~~~~~~~~~  211 (377)
T TIGR00890       177 IGYPPGQL----IKTNI--------------------EVSVK---------------------DYTVWEMLRTPQFWVLY  211 (377)
T ss_pred             eecCchhc----cccCc--------------------ccchh---------------------hhhHHHHHcCccHHHHH
Confidence            54422110    00000                    00000                     01244567788887776


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHH
Q 012500          252 LGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  330 (462)
Q Consensus       252 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  330 (462)
                      +..++..........+.+.+.++ .+.++... .......+..++++++.|++.||++||     +.+..+..+......
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~~~~~~~~~~~~~~  285 (377)
T TIGR00890       212 LSFFLNAVSGLLLIGLYKPYGQS-LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQ-----KTMSIVFGISAVGMA  285 (377)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhhHHHHHHHHHHH
Confidence            66665555555555566666554 55665443 445677888899999999999999988     666555555554444


Q ss_pred             HHHHhhh--hHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHH
Q 012500          331 TAFCLSS--LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKT  408 (462)
Q Consensus       331 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~  408 (462)
                      .....++  ....+....+.+++.+...+..+....+.+|+++|+++.|+.+...+. |..++|.+.|.+.|..| |+..
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g-~~~~  363 (377)
T TIGR00890       286 AMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAV-AGIFGGLIASHALTEIG-FEYT  363 (377)
T ss_pred             HHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHH-HHHHHHHHHHHHHhhhc-hhhH
Confidence            4333332  222233344555555555556666778889999999999999766665 99999999999999876 7677


Q ss_pred             HHHHHHHHHH
Q 012500          409 TLALTSIFFL  418 (462)
Q Consensus       409 ~~~~~~~~~~  418 (462)
                      +...+++.++
T Consensus       364 f~~~~~~~~~  373 (377)
T TIGR00890       364 FIVTGAFALT  373 (377)
T ss_pred             HHHHHHHHHH
Confidence            7666555443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=100.00  E-value=8.4e-34  Score=263.93  Aligned_cols=338  Identities=15%  Similarity=0.096  Sum_probs=260.3

Q ss_pred             HHHhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccc-----hhH
Q 012500           13 GLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSF-----DFW   86 (462)
Q Consensus        13 ~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~   86 (462)
                      ...+|.+..+   .+.++.+.+.  ..+.+.++..+++++.|++ ||+|||+++..+.++..++.++.++.+     |++
T Consensus        19 ~~~~~~~~~~---~~~s~~~~g~--~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (365)
T TIGR00900        19 QVALPLYVLA---GTGSASVLSL--AALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIW   93 (365)
T ss_pred             HHHHHHHHHH---hhccHHHHHH--HHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence            3446765554   5777777555  9999999999999999999 999999999999999999998888887     999


Q ss_pred             HHHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHH
Q 012500           87 SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV  166 (462)
Q Consensus        87 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~  166 (462)
                      .+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.++.|||+.|++.++..++..+
T Consensus        94 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~  173 (365)
T TIGR00900        94 QVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISAL  173 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998876655544


Q ss_pred             HHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhH
Q 012500          167 LAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKV  246 (462)
Q Consensus       167 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (462)
                      ..+...+++.+.   +++ ++.                      +++                ..++..+..+.++++|.
T Consensus       174 ~~~~~~~~~~~~---~~~-~~~----------------------~~~----------------~~~~~~~~~~~~~~~~~  211 (365)
T TIGR00900       174 LIVSVRIPELAA---SEI-QAL----------------------SNA----------------VLRDTREGIKFVLKNPL  211 (365)
T ss_pred             HHHhcccccCCC---ccc-ccc----------------------chh----------------HHHHHHhHHHHHHcCcH
Confidence            444332211100   000 000                      000                00011234667788888


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHH
Q 012500          247 YVVNVLGYIAYNFVIGAYS-YWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFL  324 (462)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  324 (462)
                      ++...+..+.......... .+.|.+.++.++.++... .......++.+++.++.+++.||.+++     +.+..+...
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~  286 (365)
T TIGR00900       212 LRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRM-----ALMTGAIFV  286 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh-----HHHHHHHHH
Confidence            8887777766666665555 788999888788876555 444667788889999999999999987     666555544


Q ss_pred             HHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhc
Q 012500          325 GAISCLTAFCLSS-LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  403 (462)
Q Consensus       325 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g  403 (462)
                      ...........++ .+...+..++.+++.+...+.......+..|++.|+++.|+.+...+. +..++|.+.|.+.|..|
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       287 IGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHA-AWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC
Confidence            4444444444443 556666677778888777777888889999999999999999766666 88999999999998754

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=3.3e-33  Score=261.49  Aligned_cols=352  Identities=11%  Similarity=0.068  Sum_probs=253.8

Q ss_pred             HHHHHhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHH
Q 012500           11 LIGLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIA   89 (462)
Q Consensus        11 ~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~   89 (462)
                      ..+..+|.+.++   ++.++.+.+.  ..+.+.+++.+++++.|++ ||+|||+++..+.++.+++.+++++++|++.++
T Consensus        25 ~~g~~~~~i~~~---~~~s~~~~g~--~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~   99 (394)
T PRK03699         25 VTGMVMGPIAEY---FNLPVSSMSN--TFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFS   99 (394)
T ss_pred             HHhhhhHHHHHH---hCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHH
Confidence            344456765544   7888888665  8999999999999999999 999999999999999999999999999999999


Q ss_pred             HHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhc-ccchHHHHHHHHHHHHHHHHHH
Q 012500           90 ICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-HLNWRYAFWGEAILMLPFAVLA  168 (462)
Q Consensus        90 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~~gwr~~f~~~~~~~~~~~~~~  168 (462)
                      +.|+++|++.+...+....++.|++|+++|+++++..+....+|..++|.+.+.+.+ ..+||+.|.+.+++.++..++.
T Consensus       100 ~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~  179 (394)
T PRK03699        100 IAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT  179 (394)
T ss_pred             HHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998887754 5799999999888776655444


Q ss_pred             hhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHH
Q 012500          169 FVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYV  248 (462)
Q Consensus       169 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (462)
                      ++.  +.++    +++++..  +         +      +   +      .                  .+. ..++.++
T Consensus       180 ~~~--~~p~----~~~~~~~--~---------~------~---~------~------------------~~~-~~~~~~~  208 (394)
T PRK03699        180 LFS--EFPA----LGKHAPK--A---------D------K---P------V------------------AKE-KWGIGVL  208 (394)
T ss_pred             Hhc--CCcc----ccccCcc--c---------c------C---c------c------------------ccc-cCChHHH
Confidence            322  1110    0000000  0         0      0   0      0                  000 0134455


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHH
Q 012500          249 VNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI  327 (462)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  327 (462)
                      ...+..++.......+..|.|.|+++.++.++.+. .+.+...++..+++++.+++.||+++|     +.+.....+...
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~-----~~l~~~~~~~~~  283 (394)
T PRK03699        209 FLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQ-----RILTVLAGLALV  283 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchh-----hHHHHHHHHHHH
Confidence            55555666666677888999999998888886555 445677788899999999999999998     665555544444


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhH
Q 012500          328 SCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRK  407 (462)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  407 (462)
                      ........++.+......++.+++.+..++.......+..+ +.+++..+......+ +|..++|.+.|++.|..| +..
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~g~~i~p~~~G~l~~~~g-~~~  360 (394)
T PRK03699        284 LMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGT-IGTMLTFVVTSPIVAHFG-LQA  360 (394)
T ss_pred             HHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhh-HHHHHHHHHHHHHHHHhC-chh
Confidence            44444344444444455556666666555555555455443 445677777755544 599999999999999877 666


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 012500          408 TTLALTSIFFLAAGIWFVG  426 (462)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~  426 (462)
                      .++....+.+++.++.+..
T Consensus       361 ~~~~~~~~~~~~~~~~~~~  379 (394)
T PRK03699        361 ALLTANGLYAVVFVMCILL  379 (394)
T ss_pred             hhhhhHHHHHHHHHHHHHH
Confidence            6666666655554444433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=1.9e-33  Score=270.91  Aligned_cols=378  Identities=13%  Similarity=0.064  Sum_probs=236.1

Q ss_pred             chhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccch------hHHHHHHHHHhhccccccccccc
Q 012500           35 SSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFD------FWSIAICRMLVGVGEASFISLAA  107 (462)
Q Consensus        35 ~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~~~  107 (462)
                      .+++.+.+.++.++++++.|++ ||+|||+++..+.+++.+++++++++++      ++.++++|+++|++.|...+...
T Consensus        58 ~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~  137 (502)
T TIGR00887        58 SAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSA  137 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            3559999999999999999999 9999999999999999999999998876      78999999999999999999999


Q ss_pred             chhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhc-----------------------ccchHHHHHHHHHHHHHH
Q 012500          108 PFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-----------------------HLNWRYAFWGEAILMLPF  164 (462)
Q Consensus       108 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-----------------------~~gwr~~f~~~~~~~~~~  164 (462)
                      .++.|++|+++|++++++.+....+|..+++.++..+..                       .++||+.|.+.++++++.
T Consensus       138 ~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~  217 (502)
T TIGR00887       138 IITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLA  217 (502)
T ss_pred             HHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988875532                       247999998888776554


Q ss_pred             HHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhh
Q 012500          165 AVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQE  244 (462)
Q Consensus       165 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (462)
                      .+ ..+.+||++++...++++++...+ ...+....+..++ .++.++.+.++  +     ..       ..++++++++
T Consensus       218 ~~-~~~~lpESpr~l~~~~~~~~~a~~-~~~~~~~~~~~~~-~~~~~~~~~~~--~-----~~-------~~~~~~l~~~  280 (502)
T TIGR00887       218 LY-FRLTIPETPRYTADVAKDVEQAAS-DMSAVLQVKIEAE-PDEVEKASTAV--E-----VP-------KASWSDFFTH  280 (502)
T ss_pred             HH-HHHhCCCCHHHHHHhCcchHHHHH-HHHHHhccccccC-cccccchhccc--c-----ch-------hhhHHHHHHH
Confidence            44 445669998874332222111000 0001100000000 00000000000  0     00       0123333331


Q ss_pred             ---hHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-------------hhhhhHHHhhhhhhhhhhHHH
Q 012500          245 ---KVY----VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-------------MFGGVTIVCGIVGTISGGFIL  304 (462)
Q Consensus       245 ---~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~g~l~  304 (462)
                         ++.    .......+......++...|.|.++++ .|.++...             ....+..++.+++.++.++++
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~  359 (502)
T TIGR00887       281 FFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLV  359 (502)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               111    111222333344555667788888875 45543210             112334456677888999999


Q ss_pred             hhhccccccchhHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHH-hccccceeeeeccCCcchhhHHHHHHH
Q 012500          305 DQMGATISNAFKLLSAATFLGAISCLTAFCLS---SLYGFLALFTVGELLVF-ATQAPVNYVCLHSVKPSLRALSMAIST  380 (462)
Q Consensus       305 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (462)
                      ||+|||     +.+..+..+..+.........   +........++..++.+ ...+....+..|.+|++.|+++.|+.+
T Consensus       360 dr~gRR-----~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~  434 (502)
T TIGR00887       360 DIIGRK-----PIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISA  434 (502)
T ss_pred             hhhcch-----hHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHH
Confidence            999998     666555544443333222211   11111222222222222 233344555678888899999999997


Q ss_pred             HHHhhhccccchhHHHHHHhhhc---------chhHHHHHHHHHHHHHHHHHHHHHhhcc-ccccchhh
Q 012500          381 VSIHIFGDVPSSPLVGVLQDHVN---------NWRKTTLALTSIFFLAAGIWFVGIFLKS-IDKFNEDG  439 (462)
Q Consensus       381 ~~~~~~g~~~~~~~~g~l~~~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  439 (462)
                      ...+. +++++|.+.|.+.|..+         ++...+.+++++.+++.+..   .++|| ++++.||+
T Consensus       435 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~---~~lpEt~~~~leei  499 (502)
T TIGR00887       435 ASGKA-GAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT---LLIPETKGKSLEEL  499 (502)
T ss_pred             HHhhh-HHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh---eEeccCCCCCHHhh
Confidence            66665 89999999999988532         12345555555544443332   24455 55544443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=8.4e-34  Score=271.60  Aligned_cols=363  Identities=13%  Similarity=0.111  Sum_probs=255.7

Q ss_pred             ccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhcc--chhHHHHHHHHHhhccccc
Q 012500           25 FLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSS--FDFWSIAICRMLVGVGEAS  101 (462)
Q Consensus        25 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~  101 (462)
                      +++.+..+.+.  +.+.+.+++.+++++.|++ ||+|||+++..+.++++++.+++.++  .+++.+++.|+++|++.+.
T Consensus        70 ~~~~s~~~~g~--~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~  147 (465)
T TIGR00894        70 NFKWSGALQGL--ILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGS  147 (465)
T ss_pred             CCCCCHHHhhH--HHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhccc
Confidence            35666666555  9999999999999999999 99999999999999999999887554  5688899999999999999


Q ss_pred             ccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhccc-chHHHHHHHHHHHHHHHHHHhhccccccCCCC
Q 012500          102 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA  180 (462)
Q Consensus       102 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~  180 (462)
                      ..|....++.|++|+++|++++++...+..+|.++++++++.+.+.. |||+.|++.++++++..++.+++.||+++..+
T Consensus       148 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~  227 (465)
T TIGR00894       148 VSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP  227 (465)
T ss_pred             chhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC
Confidence            99999999999999999999999999999999999999999999884 99999999999887777777666655443211


Q ss_pred             CccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHH
Q 012500          181 PAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFV  260 (462)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (462)
                      . +++++.  +    .+.         +..+++    +++.           +...+++++++++.+|...+..++.+..
T Consensus       228 ~-~~~~~~--~----~i~---------~~~~~~----~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (465)
T TIGR00894       228 C-ISKFEK--K----YIN---------SSLQGQ----KGST-----------RQSLPIKAIPKSLPVWAIWFAIFGHFWL  276 (465)
T ss_pred             C-CCHHHH--H----HHH---------hhcccc----cCCC-----------CCCCCHHHHhcCHHHHHHHHHHHHHHHH
Confidence            1 000000  0    000         000000    0000           0012467888999999999988888888


Q ss_pred             HHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhH----HHHHHHHH-HHHHHHHHH
Q 012500          261 IGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKL----LSAATFLG-AISCLTAFC  334 (462)
Q Consensus       261 ~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~  334 (462)
                      .+.+.+|+|.|+++..+.+.... ...++..++..++.+++|+++||+++|+...++.    ........ ....+....
T Consensus       277 ~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (465)
T TIGR00894       277 YTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY  356 (465)
T ss_pred             HHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999888886555 4456778889999999999999987653322221    11111111 111111111


Q ss_pred             -hhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhh--cchhHHHHH
Q 012500          335 -LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV--NNWRKTTLA  411 (462)
Q Consensus       335 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~  411 (462)
                       ..+.+..+..+++.+.+.+...+..... ..+..++.+|.+.++.+..... +..++|.+.|.+.|..  +.|...+.+
T Consensus       357 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~l-~~~i~p~l~g~~~~~~~~~~~~~~f~~  434 (465)
T TIGR00894       357 LSAAFYLTIIILTLANAVSSGPLAGVLIN-SLDLAPRFLGFIKGITGLPGFI-GGLIASTLAGNILSQDSKNVWLIVFLI  434 (465)
T ss_pred             cCCchHHHHHHHHHHHHHhhhhhhhhhhc-hhhcChhHHHHHHHHHHHHHHH-HHHHHHHhhheeeCCCCchHHHHHHHH
Confidence             1233333344444444444333333333 3344456899999999766665 8889999999888753  446666666


Q ss_pred             HHHHHHHHHHH
Q 012500          412 LTSIFFLAAGI  422 (462)
Q Consensus       412 ~~~~~~~~~~~  422 (462)
                      .++..+++.++
T Consensus       435 ~~~~~~i~~i~  445 (465)
T TIGR00894       435 MAFVNILCVIF  445 (465)
T ss_pred             HHHHHHHHHHH
Confidence            66555554443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=100.00  E-value=1.3e-33  Score=264.08  Aligned_cols=359  Identities=15%  Similarity=0.156  Sum_probs=257.1

Q ss_pred             HHHHHHhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHH
Q 012500           10 CLIGLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSI   88 (462)
Q Consensus        10 ~~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l   88 (462)
                      ..++...|.+.++   ++.++.+.+.  +.+.+.++..+++++.|++ ||+|||+++..+.++.+++.++.+++++++.+
T Consensus        12 ~~~~~~~~~~~~~---~g~s~~~~g~--~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (379)
T TIGR00881        12 KNFALAMPYLVEE---IGLSKTDLGL--LLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVM   86 (379)
T ss_pred             HhhhhhhHHHHHH---hCCCHhHHHH--HHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHH
Confidence            4445557754443   6788888655  9999999999999999999 99999999999999999999999999999999


Q ss_pred             HHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhh-hHHHHhhcccchHHHHHHHHHHHHHHHHH
Q 012500           89 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY-VYGGVVGSHLNWRYAFWGEAILMLPFAVL  167 (462)
Q Consensus        89 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~-~~~~~l~~~~gwr~~f~~~~~~~~~~~~~  167 (462)
                      ++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++ .+++.+.+..+||+.|++.+++.++..++
T Consensus        87 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (379)
T TIGR00881        87 AALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLI  166 (379)
T ss_pred             HHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999 57777778889999999998888777777


Q ss_pred             HhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHH
Q 012500          168 AFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVY  247 (462)
Q Consensus       168 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (462)
                      .++..||+++..+.++.++...              ++.+++  +++   +++.         .+......++++++|.+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~--~~~---~~~~---------~~~~~~~~~~~~~~~~~  218 (379)
T TIGR00881       167 CFLLLRDSPQSCGLPPAEEMPN--------------EEPDGD--AEK---KEEE---------LTKKQIFLQYVLLNKVL  218 (379)
T ss_pred             HheeeCCCccccccCccccCcc--------------cccccc--ccc---cccc---------ccchHHHHHHHHhcchH
Confidence            7766666543221111100000              000000  000   0000         00011235567888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHH-HHH
Q 012500          248 VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT-FLG  325 (462)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~-~~~  325 (462)
                      +...+..++..........+.|.|+++..+.++... .......++.+++.++.+++.||..++++   ....... ...
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~---~~~~~~~~~~~  295 (379)
T TIGR00881       219 WYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRR---GPLAVFFMALI  295 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcc---hHHHHHHHHHH
Confidence            888888888888888888999999998888886555 44567778889999999999998654321   2221111 111


Q ss_pred             HHHHHHHHH--hhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhc
Q 012500          326 AISCLTAFC--LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  403 (462)
Q Consensus       326 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g  403 (462)
                      .........  ..+.+.......+.++......+.......+..|++.|+++.|+.+...+. |..++|.+.|.+.|..|
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g  374 (379)
T TIGR00881       296 IVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYL-GGILAGLPLGYLADGFG  374 (379)
T ss_pred             HHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhh-hhhhhhhhHHHHHHhhc
Confidence            111111111  123333333344444444344444455677888999999999999766665 88899999999999876


Q ss_pred             chh
Q 012500          404 NWR  406 (462)
Q Consensus       404 ~~~  406 (462)
                       |+
T Consensus       375 -~~  376 (379)
T TIGR00881       375 -WA  376 (379)
T ss_pred             -cc
Confidence             44

>PRK10489 enterobactin exporter EntS; Provisional

Probab=100.00  E-value=5.1e-33  Score=262.50  Aligned_cols=342  Identities=10%  Similarity=-0.008  Sum_probs=247.1

Q ss_pred             HhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhc-----cchhHHH
Q 012500           15 ILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGS-----SFDFWSI   88 (462)
Q Consensus        15 ~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l   88 (462)
                      .+|.+.++   ++.++.+.+.  ..+.+.++..+++++.|++ ||+|||+++..+.++.+++.+..+.     .++++.+
T Consensus        39 ~~~~~~~~---~~~s~~~~g~--~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  113 (417)
T PRK10489         39 AVPVQIQM---MTGSTLQVGL--SVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAI  113 (417)
T ss_pred             HHHHHHHH---HHCCHHHHHH--HHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence            36655554   5667767555  9999999999999999999 9999999999988888777665442     5688999


Q ss_pred             HHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHH
Q 012500           89 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLA  168 (462)
Q Consensus        89 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~  168 (462)
                      ++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..+||.+++.+.+..+||+.|++.++..++..++.
T Consensus       114 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~  193 (417)
T PRK10489        114 YLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL  193 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999988888899999999999999999999999999999999999999988899999998877766554443


Q ss_pred             hhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHH
Q 012500          169 FVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYV  248 (462)
Q Consensus       169 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (462)
                       +..|+++++.   ++ ++.                                         ..++..+.++.++++|.++
T Consensus       194 -~~l~~~~~~~---~~-~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~  227 (417)
T PRK10489        194 -LRLPALPPPP---QP-REH-----------------------------------------PLRSLLAGFRFLLASPVVG  227 (417)
T ss_pred             -HhCCCCCCCC---cc-ccc-----------------------------------------chHHHHHHHHHHHcChHHH
Confidence             3335432110   00 000                                         0001122355667777776


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHH
Q 012500          249 VNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI  327 (462)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  327 (462)
                      ...+..++... ......+.|.|.++..|.++... .+.....++.+++.++.+++.||.+++     +.+..+..+...
T Consensus       228 ~~~~~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~-----~~l~~~~~~~~~  301 (417)
T PRK10489        228 GIALLGGLLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPG-----LLMLLSTLGSFL  301 (417)
T ss_pred             HHHHHHHHHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcc-----hHHHHHHHHHHH
Confidence            65554443332 34567788999998788876554 344667788888999999999986554     455544444444


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhH
Q 012500          328 SCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRK  407 (462)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  407 (462)
                      ........++.+...+..++.+++.+...+...+...+..|++.|++++|+.+...+. |..++|.+.|++.|..|. ..
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~~g~~l~G~l~~~~g~-~~  379 (417)
T PRK10489        302 AVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVT-GDAIGAALLGGLGAMMTP-VA  379 (417)
T ss_pred             HHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhh-hHhHHHHHHHHHHHHhch-hh
Confidence            4444444455555555666666666655555567778888889999999999655555 999999999999998773 34


Q ss_pred             HHHHHHHH
Q 012500          408 TTLALTSI  415 (462)
Q Consensus       408 ~~~~~~~~  415 (462)
                      .+...+.+
T Consensus       380 ~~~~~~~~  387 (417)
T PRK10489        380 SASASGFG  387 (417)
T ss_pred             HHHHHHHH
Confidence            45444444

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.2e-32  Score=236.86  Aligned_cols=342  Identities=15%  Similarity=0.092  Sum_probs=278.9

Q ss_pred             cccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchh---HHHHHHHHHhhccc
Q 012500           24 KFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDF---WSIAICRMLVGVGE   99 (462)
Q Consensus        24 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~---~~l~~~r~l~G~~~   99 (462)
                      .++++|+.|.+.  +.+...+...+.-++.|.+ ||+|.|++...++++..+..+..+++.++   +++++.+.+.|++.
T Consensus        42 ~~~~LS~~q~~l--l~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~G  119 (417)
T COG2223          42 SDFGLSEGQKGL--LVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAG  119 (417)
T ss_pred             cccCCCHHHHHH--HHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhccc
Confidence            448999999766  9999999999999999999 99999999999999999999999998654   59999999999987


Q ss_pred             ccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccc---hHHHHHHHHHHHHHHHHHHhhcccccc
Q 012500          100 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN---WRYAFWGEAILMLPFAVLAFVIKPLQL  176 (462)
Q Consensus       100 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g---wr~~f~~~~~~~~~~~~~~~~~~p~~~  176 (462)
                      + .+......+++|+||+++|.++|++. ..|+|..+...++..+....+   ||.+..+..+..++..+..++...+.+
T Consensus       120 a-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p  197 (417)
T COG2223         120 A-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVP  197 (417)
T ss_pred             c-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence            7 67788999999999999999999999 899999999999999998888   999999999888888888888775433


Q ss_pred             CCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHH
Q 012500          177 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA  256 (462)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (462)
                      ..+...++..                                                ...++.++++++.|.+.+.++.
T Consensus       198 ~~r~~~~~~~------------------------------------------------~~~~~~v~~~~~~W~lsllY~~  229 (417)
T COG2223         198 EHRASVKPQL------------------------------------------------PAQLKAVFSNKDTWLLSLLYFA  229 (417)
T ss_pred             hhhccccccc------------------------------------------------hhHHHHHhcCcchHHHHHHHHH
Confidence            2211111000                                                0246778899999999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHh
Q 012500          257 YNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL  335 (462)
Q Consensus       257 ~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (462)
                      ....+.++..++|.|++++++.++... .+.....+.+.+.++++|+++||+|.+     +.+......++++.......
T Consensus       230 tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~-----rv~~~~f~~~~~~~~~l~~~  304 (417)
T COG2223         230 TFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGR-----RVTLAVFVGMALAAALLSLF  304 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccch-----hHHHHHHHHHHHHHHHHHcc
Confidence            999999999999999999999998766 555677778888999999999999988     66665555555544444333


Q ss_pred             -------hhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHH
Q 012500          336 -------SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKT  408 (462)
Q Consensus       336 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~  408 (462)
                             .+.......+...+++.+......+..+...++ ++.|.+.|+.. ..+.+|+..-|...|...|.+|++...
T Consensus       305 ~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vg-a~G~lGGf~lp~~~g~~~~~tg~~~~~  382 (417)
T COG2223         305 LTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVG-AIGGLGGFFLPLAFGVSLDLTGSYTGA  382 (417)
T ss_pred             ccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHH-HhccccccchhHHHHHHHHhcccHHHH
Confidence                   344555565666777788888888888877764 46888999994 555559999999999999999989888


Q ss_pred             HHHHHHHHHHHHHHHH
Q 012500          409 TLALTSIFFLAAGIWF  424 (462)
Q Consensus       409 ~~~~~~~~~~~~~~~~  424 (462)
                      ++++..+.+++.+...
T Consensus       383 f~~~~~~~~~a~v~~~  398 (417)
T COG2223         383 FMLLLAFYLVALVLTW  398 (417)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888877666655444

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=6.1e-33  Score=263.22  Aligned_cols=340  Identities=13%  Similarity=0.071  Sum_probs=234.0

Q ss_pred             HHhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHH
Q 012500           14 LILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICR   92 (462)
Q Consensus        14 ~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r   92 (462)
                      +..|.+.++   ++.++.+.+.  ..+.+.++..+++++.|++ ||+|||+++..+.++.+++.++++++++++.++++|
T Consensus        39 ~~~~~i~~~---~~~s~~~~~~--~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r  113 (426)
T PRK12307         39 YIMYLIKAD---LGLTDMEGAF--LATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSR  113 (426)
T ss_pred             HHHHHHHHH---hCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            335544333   7888888655  9999999999999999999 999999999999999999999999999999999999


Q ss_pred             HHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhcc
Q 012500           93 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  172 (462)
Q Consensus        93 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  172 (462)
                      +++|++.+...+....++.|++|+|+|++++++...+..+|.++++.+.+.+.+..+||+.|++..+..++ .+......
T Consensus       114 ~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~-~~~~~~~~  192 (426)
T PRK12307        114 FIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLL-VIYIRARA  192 (426)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHH-HHHHHHHC
Confidence            99999999999999999999999999999999999999999999999999999989999999985443222 11111111


Q ss_pred             ccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHH
Q 012500          173 PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL  252 (462)
Q Consensus       173 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (462)
                      ||++++.    +++..          +.++         +.      +        +.+++...+.+++++++.++....
T Consensus       193 p~~~~~~----~~~~~----------~~~~---------~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~  235 (426)
T PRK12307        193 PESKEWE----EAKLS----------GKGK---------HS------Q--------SAWSVFSLSMKGLFNRAQFPLTLC  235 (426)
T ss_pred             CCChHHH----Hhhhh----------cccc---------cc------c--------cchhhhhHHHHHHHhhchHHHHHH
Confidence            3221100    00000          0000         00      0        000001124566777777765443


Q ss_pred             HHHH---HHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHH
Q 012500          253 GYIA---YNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS  328 (462)
Q Consensus       253 ~~~~---~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  328 (462)
                      ....   ..........++|.|+++. +.++... .......++.+++.++.|++.||++||     +....+..+....
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~-----~~~~~~~~~~~~~  309 (426)
T PRK12307        236 VFIVLFSIFGANWPIFGLLPTYLAGE-GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLK-----KTFSIGLLMSFLF  309 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHHHHHHHHH
Confidence            3222   2222334567889888874 6665444 344667788899999999999999988     6665555444443


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHH--HhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhc
Q 012500          329 CLTAFCLSSLYGFLALFTVGELLV--FATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  403 (462)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g  403 (462)
                      .+.....++........++.+.+.  ....+..+..+.+.+|++.|+++.|+.+...+. ++.++|.+.|++.|..|
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-~~~~gp~~~g~l~~~~g  385 (426)
T PRK12307        310 IFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAAT-SGTFNSMAATWLGITMG  385 (426)
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhH-HHHHHHHHHHHHHHccc
Confidence            333322222111222222222221  122233445667889999999999999666666 88999999999999876

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=5.3e-33  Score=262.28  Aligned_cols=362  Identities=11%  Similarity=0.064  Sum_probs=247.1

Q ss_pred             HHHhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHH
Q 012500           13 GLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAIC   91 (462)
Q Consensus        13 ~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~   91 (462)
                      +.+.|.+.++   ++.++.+.+.  ..+.+.++..+++++.|.+ ||+|||+++..+.++.+++.++++++++++.+++.
T Consensus        32 ~~~~~~l~~~---~~~s~~~~g~--~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  106 (405)
T TIGR00891        32 ALVLAEVAGE---FGLTTVDAAS--LISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIA  106 (405)
T ss_pred             HHHHHHHHHH---hCCChhhHHH--HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            3445644443   7888888655  9999999999999999999 99999999999999999999999999999999999


Q ss_pred             HHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccc--hHHHHHHHHHHHHHHHHHHh
Q 012500           92 RMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN--WRYAFWGEAILMLPFAVLAF  169 (462)
Q Consensus        92 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g--wr~~f~~~~~~~~~~~~~~~  169 (462)
                      |++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+.+..+  ||+.|++.++..++. ++..
T Consensus       107 ~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~-~~~~  185 (405)
T TIGR00891       107 RLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA-LWLR  185 (405)
T ss_pred             HHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HHHH
Confidence            9999999999999999999999999999999999999999999999999999888766  999999876554443 3333


Q ss_pred             hccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhh-h-hHH
Q 012500          170 VIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQ-E-KVY  247 (462)
Q Consensus       170 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~  247 (462)
                      ...||++++.+++++++..                  .+..++...+++..+       ...++.....++..+ + +.+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  240 (405)
T TIGR00891       186 KNIPEAEDWKEKHAGKALV------------------RTMVDILYGGEHRIA-------NIVMTLAAAMVQSAGKRWPTF  240 (405)
T ss_pred             HhCCCChhHHHHhhhhhhh------------------hhHHHHHhccchhhh-------hhhhhhhHHhhhhhhhhhHHH
Confidence            3445543211000000000                  000000000000000       000000011111111 1 112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHH
Q 012500          248 VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  326 (462)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  326 (462)
                      ..........+........+.|.|+.+..+.++.+. .+.....++.+++.++.+++.||++||     +.+........
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~-----~~~~~~~~~~~  315 (405)
T TIGR00891       241 VYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRR-----KAYVCSLLAGQ  315 (405)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-----hhhHHHHHHHH
Confidence            222233333344455666788999988888886555 445677888899999999999999998     65555544432


Q ss_pred             HHHH-HHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcch
Q 012500          327 ISCL-TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNW  405 (462)
Q Consensus       327 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~  405 (462)
                      .... .....++.+......++.+++.....+.....+.+..|++.|+++.|+.+...+. |..++|.+.|.+.|+.|+|
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~~g~~~~g~l~~~~g~~  394 (405)
T TIGR00891       316 LLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNL-GGALAPIIGALLAQRLDEY  394 (405)
T ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHH-HHHHHHHHHHHHHHhcccc
Confidence            2222 2222233333344434555555555666677888889999999999999766665 8899999999999998877


Q ss_pred             hHHHHH
Q 012500          406 RKTTLA  411 (462)
Q Consensus       406 ~~~~~~  411 (462)
                      ...+..
T Consensus       395 ~~~~~~  400 (405)
T TIGR00891       395 GTALAS  400 (405)
T ss_pred             chhHHh
Confidence            554443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=4.3e-33  Score=267.57  Aligned_cols=367  Identities=13%  Similarity=0.060  Sum_probs=263.8

Q ss_pred             HHHhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHH
Q 012500           13 GLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAIC   91 (462)
Q Consensus        13 ~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~   91 (462)
                      +..+|.+.++   ++.+..+.  +|..+.|.++..++.++.|++ ||+|||+++..+.+++.++++++++++|++.++++
T Consensus        26 ~~a~p~i~~~---l~~s~~~~--~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~  100 (495)
T PRK14995         26 HVAAPTLSMT---LGASGNEL--LWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIAT  100 (495)
T ss_pred             HHHHHHHHHH---hCCCHhHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3346766555   78777774  459999999999999999999 99999999999999999999999999999999999


Q ss_pred             HHHhhcccccccccccchhcccC-CCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhh
Q 012500           92 RMLVGVGEASFISLAAPFIDDNA-PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  170 (462)
Q Consensus        92 r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  170 (462)
                      |+++|+|.+...+.....+.+++ |+++|+++++++.....+|..+||.+++.+.++.|||+.|++...++++..++.++
T Consensus       101 r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~  180 (495)
T PRK14995        101 RALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTAR  180 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888888887766 67899999999999999999999999999999999999999998887777777777


Q ss_pred             ccccccCCCCCcccccccccccc-------ccccccccccccccccccc--------hhhhhhhhccccccchhhhhcch
Q 012500          171 IKPLQLKGFAPAESGKAQVVASV-------SEGSEASNLNDHVSEDISD--------QASERSIKSIGESRFLNQLSQFS  235 (462)
Q Consensus       171 ~~p~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  235 (462)
                      ..|+++++.  +++.+.......       .....+...+.........        .......+.+.+        +..
T Consensus       181 ~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~--------~p~  250 (495)
T PRK14995        181 YVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAAS--------RPM  250 (495)
T ss_pred             hCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCC--------CCC
Confidence            767643211  110000000000       0000000000000000000        000000000000        111


Q ss_pred             hhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccc
Q 012500          236 QDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNA  314 (462)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~  314 (462)
                      .+ .+++|+|.+....+..++......+...+.|.|+++.+|.++... .......++..++.++.|++.||+++|    
T Consensus       251 ~~-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~----  325 (495)
T PRK14995        251 ID-MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLR----  325 (495)
T ss_pred             cC-HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch----
Confidence            12 357888888887777777777777888899999999999997666 444666788889999999999999987    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccc
Q 012500          315 FKLLSAATFLGAISCLTAFCL---SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPS  391 (462)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  391 (462)
                       +.+..+..+...........   ++.+......++.+++.+...++......+..|+++++.+.++.++..+. |..+|
T Consensus       326 -~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l-G~~~G  403 (495)
T PRK14995        326 -LVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYEL-GAGLG  403 (495)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHH-HHHHH
Confidence             66655554444433322221   23444555677778888887777788888889999999999999766666 98999


Q ss_pred             hhHHHHHHhh
Q 012500          392 SPLVGVLQDH  401 (462)
Q Consensus       392 ~~~~g~l~~~  401 (462)
                      +.+.|.+.++
T Consensus       404 ~ai~g~i~~~  413 (495)
T PRK14995        404 IAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHHH
Confidence            9999998774

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=1.9e-32  Score=257.77  Aligned_cols=327  Identities=12%  Similarity=0.005  Sum_probs=245.9

Q ss_pred             ccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhccccccc
Q 012500           25 FLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFI  103 (462)
Q Consensus        25 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~  103 (462)
                      +++.++.+.+.  ..+.+.+++.+++++.|++ ||+|||+++..+..+.+++.+.+.++++++.+++.|+++|++.+...
T Consensus        42 ~~~~s~~~~~~--~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~  119 (406)
T PRK15402         42 DFNAGAEWVPT--SMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIG  119 (406)
T ss_pred             HhCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHH
Confidence            37788877555  8899999999999999999 99999999999999999999999999999999999999999999888


Q ss_pred             ccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCcc
Q 012500          104 SLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAE  183 (462)
Q Consensus       104 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  183 (462)
                      +...+++.|++|+++|++++++......+|..++|.+++.+.++.+||+.|++.++..++..+..++..||+++..+  +
T Consensus       120 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  197 (406)
T PRK15402        120 AVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVG--E  197 (406)
T ss_pred             HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCcccc--c
Confidence            88899999999999999999999988889999999999999998999999999988877776665555565421100  0


Q ss_pred             ccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 012500          184 SGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGA  263 (462)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (462)
                        + .                                         +.++..+++++++++|.++...+...+.......
T Consensus       198 --~-~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (406)
T PRK15402        198 --K-L-----------------------------------------SLKELGRDYKLVLKNRRFVAGALALGLVSLPLLA  233 (406)
T ss_pred             --c-c-----------------------------------------cHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence              0 0                                         0001123466788899888877766666665666


Q ss_pred             HHHHhhHHHHHHhCCCcchhhh-hhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHh-----hh
Q 012500          264 YSYWGPKAGYNIYHMSNADMMF-GGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL-----SS  337 (462)
Q Consensus       264 ~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~  337 (462)
                      ...+.|.++.+.++.++..... .....++.+++.++.+++.||+++|     +.+..+..+...........     ++
T Consensus       234 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~  308 (406)
T PRK15402        234 WIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLR-----SLIRMGLWPMVAGLLLAALATVISSHA  308 (406)
T ss_pred             HHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHHHHHHHHccccc
Confidence            6677898888888888655432 3445567788999999999999987     66555544433332222211     23


Q ss_pred             hHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchh
Q 012500          338 LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWR  406 (462)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~  406 (462)
                      .+.......+.+++.+...+....... ..+++++++..+..+..... +..+|+.+.+.+.+..+.+.
T Consensus       309 ~~~~~~~~~~~g~g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~-~~~~g~~~~~~l~~~~~~~~  375 (406)
T PRK15402        309 YLWLTAGLSLYAFGIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLSML-IFTVGIELSKHAYLGGGNGL  375 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHh-hhccccccHHHHHHHHHHHH-HHHHHHHHHHhcccCCchHH
Confidence            334445556666666655555444433 33458899999999765555 88899999999988877443

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=4.4e-32  Score=256.89  Aligned_cols=339  Identities=14%  Similarity=0.101  Sum_probs=222.3

Q ss_pred             HHHHHHhhhhhhhccccccccccccch----hhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccch
Q 012500           10 CLIGLILKRSMKKKKFLSLRKLAAGSS----VNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFD   84 (462)
Q Consensus        10 ~~~~~~~p~~~~~~~~~~~~~~~~~~s----~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~   84 (462)
                      ..++...|.+.++   ++.++.+.+.-    .......++..+++++.|++ ||+|||++++.+.++++++++++++++|
T Consensus        32 ~~~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~  108 (434)
T PRK15075         32 FLFGFYATAIAKT---FFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPG  108 (434)
T ss_pred             HHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCc
Confidence            4456667855554   56666554320    11122233345788999999 9999999999999999999999999999


Q ss_pred             hHH--------HHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhh--------ccc
Q 012500           85 FWS--------IAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG--------SHL  148 (462)
Q Consensus        85 ~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~--------~~~  148 (462)
                      ++.        ++++|+++|++.+...+....+++|++|+++|++++++...+.++|..+++.+++.+.        +.+
T Consensus       109 ~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~  188 (434)
T PRK15075        109 YATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEW  188 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhcc
Confidence            874        6889999999999999989999999999999999999999988888888888777653        467


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccch
Q 012500          149 NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFL  228 (462)
Q Consensus       149 gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (462)
                      |||++|++..+.. +.   .+ +.++.+     +|+++...++                           ++.       
T Consensus       189 gWr~~f~~~~~~~-~~---~~-~~~~~~-----~e~~~~~~~~---------------------------~~~-------  224 (434)
T PRK15075        189 GWRIPFLIGCLIV-PF---IF-LIRRSL-----EETEEFLARK---------------------------HRP-------  224 (434)
T ss_pred             chHHHHHHHHHHH-HH---HH-HHHHhc-----CCCHHHHHhh---------------------------hcc-------
Confidence            9999999754332 11   11 111111     1110000000                           000       


Q ss_pred             hhhhcchhhHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhh
Q 012500          229 NQLSQFSQDTKVLLQEKVYVVNV-LGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQ  306 (462)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~  306 (462)
                       ..   .+.++...+++..+... ...++.....+....|.|.|+++..|.+..+. .......++++++.++.|+++||
T Consensus       225 -~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr  300 (434)
T PRK15075        225 -SM---REIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR  300 (434)
T ss_pred             -cc---ccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             00   01122333444444332 22334455566788899999998888886554 34456778888999999999999


Q ss_pred             hccccccchhHHHHHHHHHHHHHH-HH-HH-h-hhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHH
Q 012500          307 MGATISNAFKLLSAATFLGAISCL-TA-FC-L-SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVS  382 (462)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (462)
                      ++||     +.......+...... .. .. . ++.........+.+++.+...+.......|..|++.|+++.++.+..
T Consensus       301 ~g~r-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~  375 (434)
T PRK15075        301 IGRR-----PVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSL  375 (434)
T ss_pred             hcch-----HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHH
Confidence            9998     555444333222111 11 11 1 12222222233334445444444556678889999999999997555


Q ss_pred             HhhhccccchhHHHHHHhhhcc
Q 012500          383 IHIFGDVPSSPLVGVLQDHVNN  404 (462)
Q Consensus       383 ~~~~g~~~~~~~~g~l~~~~g~  404 (462)
                      .+.+++.++|.+.|++.|+.|.
T Consensus       376 ~~~~~g~~~p~~~g~i~~~~g~  397 (434)
T PRK15075        376 ATAIFGGFTPAISTWLIHVTGD  397 (434)
T ss_pred             HHHHHhhhHHHHHHHHHHhcCC
Confidence            5554567899999999998873

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=7.8e-33  Score=257.26  Aligned_cols=343  Identities=17%  Similarity=0.134  Sum_probs=245.7

Q ss_pred             hhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHh
Q 012500           17 KRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLV   95 (462)
Q Consensus        17 p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~   95 (462)
                      +.+....++.+....+++.  ..+++.++++++.++++.+ ||++..+.+....+++++-.++....+|++.+++.|++.
T Consensus        67 a~l~g~~edl~~~~~~l~~--~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~ll  144 (495)
T KOG2533|consen   67 ASLSGLKEDLKLVGNQLGV--LDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLL  144 (495)
T ss_pred             HHHcCCccccchhhhhhhh--HHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3344444456777777666  9999999999999999999 999999999999999999999998999999999999999


Q ss_pred             hcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhh------cccchHHHHHHHHHHHHHHHHHHh
Q 012500           96 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG------SHLNWRYAFWGEAILMLPFAVLAF  169 (462)
Q Consensus        96 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~------~~~gwr~~f~~~~~~~~~~~~~~~  169 (462)
                      |+.++..+|....+++.|+.++||++.++++.++.++|.++|.+++..+.      ...||||.|++.|+++++.+++.+
T Consensus       145 Gl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f  224 (495)
T KOG2533|consen  145 GLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVF  224 (495)
T ss_pred             HHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEE
Confidence            99999999999999999999999999999999999999999999998863      457999999999999999999999


Q ss_pred             hccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHH
Q 012500          170 VIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV  249 (462)
Q Consensus       170 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (462)
                      +++|+.|.+..-.+++++....                    ++.++.+.+...     +  +..+..+++.+++|.+|.
T Consensus       225 ~~lp~~P~~~~fl~~~ek~~~~--------------------~~~~~~~~~~~~-----~--~~~~~~~~~a~~dp~vw~  277 (495)
T KOG2533|consen  225 FFLPDNPSKAWFLTDEEKELVV--------------------ERLRESPSGGIE-----N--KFKWKGFKEALKDPGVWP  277 (495)
T ss_pred             EEecCChhhccccchHHHHHHH--------------------HHHHhccCCCcc-----c--ccCHHHHHHHHhchhHHH
Confidence            9999876532111111100000                    000000000000     0  011356889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhc----cccccchhHHHHHH-H
Q 012500          250 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMG----ATISNAFKLLSAAT-F  323 (462)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~----~~~~~~~~~~~~~~-~  323 (462)
                      ..+..++.....+++.+|+|.++.+..+.+..+. .+.....++++++.+++|+++||+.    +|     ....... +
T Consensus       278 ~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~-----~~~~~~~~~  352 (495)
T KOG2533|consen  278 FSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARR-----LLFIVFLCL  352 (495)
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHH-----HHHHHHHHH
Confidence            9999999999999999999999999666775555 6668889999999999999999953    33     3333333 2


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhh-HHHHHHHHHHhhhccccchhH
Q 012500          324 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRA-LSMAISTVSIHIFGDVPSSPL  394 (462)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~  394 (462)
                      .................................+.......+...++.|. +..++.....+. +++++|.+
T Consensus       353 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s-~~~~~~~~  423 (495)
T KOG2533|consen  353 YAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGS-AGAISGQL  423 (495)
T ss_pred             HHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhH-HHHhhhhh
Confidence            33333233333333343443344444444455555555666666664443 333333333344 44444433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=100.00  E-value=9.8e-32  Score=252.58  Aligned_cols=339  Identities=13%  Similarity=0.068  Sum_probs=239.2

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhcc--------chhH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSS--------FDFW   86 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~--------~~~~   86 (462)
                      +|..++++  ++.++.+.+.  ..+.+.++..+++++.|++ ||+|||+++..+.++.+++.+.+.++        .+++
T Consensus        38 l~~~i~~~--~g~s~~~~g~--~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (399)
T PRK05122         38 LPGYVHDQ--LGFSAFLAGL--VISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLL  113 (399)
T ss_pred             HHHHHHHh--cCccHHHHHH--HHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHH
Confidence            45444333  6778887555  9999999999999999999 99999999999999988877766543        2577


Q ss_pred             HHHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHH
Q 012500           87 SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV  166 (462)
Q Consensus        87 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~  166 (462)
                      .+++.|+++|++.+...+....++.|++|+++|++++++.+.+..+|.++|+.+++.+.++.|||+.+++..+..++..+
T Consensus       114 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~  193 (399)
T PRK05122        114 LLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLL  193 (399)
T ss_pred             HHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999998887665433222


Q ss_pred             HHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhH
Q 012500          167 LAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKV  246 (462)
Q Consensus       167 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (462)
                      .. ...|+.+     +++++ .                                               .+.++.+++  
T Consensus       194 ~~-~~~~~~~-----~~~~~-~-----------------------------------------------~~~~~~~~~--  217 (399)
T PRK05122        194 LA-RPRPAVP-----PVKGE-R-----------------------------------------------LPFRRVLGR--  217 (399)
T ss_pred             HH-hcCCCCC-----CCCcc-c-----------------------------------------------hhHHHHHHH--
Confidence            11 1111110     00000 0                                               001111111  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchhhhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHH
Q 012500          247 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  326 (462)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  326 (462)
                      .+.......+..........+.|.|+.+. +.+... .......++.+++.++.+++.||+++|     +.+.....+..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~-----~~~~~~~~~~~  290 (399)
T PRK05122        218 VWPYGMGLALASIGFGTIATFITLYYAAR-GWDGAA-LALTLFGVAFVGARLLFGNLINRLGGL-----RVAIVSLLVEI  290 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccccch-HHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHHHHHHH
Confidence            11111222233344455667778777653 443222 233556777888999999999999987     66655555555


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchh
Q 012500          327 ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWR  406 (462)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~  406 (462)
                      .........++.+..+....+.+++.+..++.......+..|+++|+++.|+.+...+. |..++|.+.|.+.|..| ++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g-~~  368 (399)
T PRK05122        291 LGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDL-SLGITGPLAGLVASWFG-YP  368 (399)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-HH
Confidence            54444444555555566666777777766666666667888899999999999766666 87888889999999876 77


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 012500          407 KTTLALTSIFFLAAGIW  423 (462)
Q Consensus       407 ~~~~~~~~~~~~~~~~~  423 (462)
                      ..+...+.+.+++.++.
T Consensus       369 ~~~~~~~~~~~~~~~~~  385 (399)
T PRK05122        369 SIFLAAALAALLGLALT  385 (399)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77777666655544433

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=6.2e-33  Score=268.76  Aligned_cols=366  Identities=13%  Similarity=0.061  Sum_probs=244.9

Q ss_pred             cccc---cccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhccccc
Q 012500           26 LSLR---KLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS  101 (462)
Q Consensus        26 ~~~~---~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~  101 (462)
                      ++.+   +.+.  ++..+.+.++.++++++.|++ ||+|||+++..+.++.+++.++.++++|++.+++.|++.|++.+.
T Consensus       119 ~~l~c~~~~~~--~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~  196 (505)
T TIGR00898       119 WDLVCEDAWKV--DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGG  196 (505)
T ss_pred             ecceechHHHH--HHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccc
Confidence            5555   5554  459999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             ccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccccCCCCC
Q 012500          102 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAP  181 (462)
Q Consensus       102 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~  181 (462)
                      ..+....++.|++|+++|+++.++.+.+..+|.++++.++..+.+   ||+.|++.+++.++..+.. ++.||++++...
T Consensus       197 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~~esp~~l~~  272 (505)
T TIGR00898       197 IWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFVPESPRWLIS  272 (505)
T ss_pred             hHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-HhcCCChHHHHH
Confidence            999999999999999999999999999999999999998877654   9999999998877666655 566887765432


Q ss_pred             ccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHH
Q 012500          182 AESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVI  261 (462)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (462)
                      +++.++.  .+...+..+.+......+....+.+++..++           ....+.++++++|.++...+......+..
T Consensus       273 ~~~~~~a--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  339 (505)
T TIGR00898       273 QGRIEEA--LKILQRIAKINGKKLPAEVLSLSLEKDLSSS-----------KKQYSFLDLFRTPNLRKTTLCLMMLWFTT  339 (505)
T ss_pred             CCCHHHH--HHHHHHHHHHcCCCCCHHHHhhhhhhhhhhc-----------cCCCcHHHHhCChHHHHHHHHHHHHHHHH
Confidence            2221111  0000010000000000000000000000000           00124677888888877665544433332


Q ss_pred             HHHHHHhhHHHHHHhCCCcchhhhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhh--H
Q 012500          262 GAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSL--Y  339 (462)
Q Consensus       262 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  339 (462)
                      ....+..+.+.. ..+.+  .........+..+++.++.+++.||+|||     +.+....++.++.++.....++.  +
T Consensus       340 ~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~i~~~~~~~~l~dr~grr-----~~~~~~~~~~~~~~l~~~~~~~~~~~  411 (505)
T TIGR00898       340 AFSYYGLVLDLG-NLGGN--IYLDLFISGLVELPAKLITLLLIDRLGRR-----YTMAASLLLAGVALLLLLFVPVDLYF  411 (505)
T ss_pred             HHHHHHHhcccc-ccCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHHHHHHcCCCchH
Confidence            222222222222 22323  22223455677788999999999999998     77766666655555544444332  3


Q ss_pred             HHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHHHHH
Q 012500          340 GFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLA  419 (462)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  419 (462)
                      ......++.+++....++..+.+..|.+|++.|+++.|+.+..... |++++|.+.+ +.+ .+ ....+.+.++..+++
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~i-g~~i~p~i~~-~~~-~~-~~~~~~~~~~~~~~~  487 (505)
T TIGR00898       412 LRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARV-GSIISPFLVY-LGE-KW-LFLPLVLFGGLALLA  487 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHH-HHHHHhHHHH-HHH-HH-HhhHHHHHHHHHHHH
Confidence            3444455555666666677778888999999999999999766555 9999998888 443 23 334555555554444


Q ss_pred             HHH
Q 012500          420 AGI  422 (462)
Q Consensus       420 ~~~  422 (462)
                      .++
T Consensus       488 ~~~  490 (505)
T TIGR00898       488 GIL  490 (505)
T ss_pred             HHH
Confidence            433

>TIGR00899 2A0120 sugar efflux transporter

Probab=100.00  E-value=7.7e-32  Score=251.56  Aligned_cols=346  Identities=11%  Similarity=0.050  Sum_probs=244.8

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHH-HHHHHHHHHHHhhhccchhHHHHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIG-VGLSVWTFATAGCGSSFDFWSIAICRM   93 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~-~~~~~~~~~~~~~~~~~~~~~l~~~r~   93 (462)
                      +|.+++++  ++.++.+.+.  ..+.+.++..+.+++.|++ ||+||||.++ .+.++..++.+++++++|++.+++.|+
T Consensus        20 l~~~l~~~--~g~s~~~~g~--~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   95 (375)
T TIGR00899        20 LSLFLSEE--VRARPAMIGL--FYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGV   95 (375)
T ss_pred             HHHHHHcc--cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            44444333  6788888655  9999999999999999999 9999998755 466666778888899999999999999


Q ss_pred             HhhcccccccccccchhcccCCCCCchhH--HHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhc
Q 012500           94 LVGVGEASFISLAAPFIDDNAPVPQKTAW--LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  171 (462)
Q Consensus        94 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  171 (462)
                      ++|.+.+...|...++..|+.|+++|++.  .+....+.++|.++||.+++.+.+..+||+.|++.+++.++..+..++.
T Consensus        96 ~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~  175 (375)
T TIGR00899        96 LLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLF  175 (375)
T ss_pred             HHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence            99988888888888889999887777654  6788888899999999999999999999999999998877777777766


Q ss_pred             cccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHH
Q 012500          172 KPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNV  251 (462)
Q Consensus       172 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (462)
                      .||.+++.++  +++ .                                               .+.++.++++.++...
T Consensus       176 ~~~~~~~~~~--~~~-~-----------------------------------------------~~~~~~~~~~~~~~~~  205 (375)
T TIGR00899       176 LPSYPRGAPG--ALT-R-----------------------------------------------LEVRGLLASRDTRLLF  205 (375)
T ss_pred             CCCcccCccc--ccC-c-----------------------------------------------chhhhhhcCcchHHHH
Confidence            6764322100  000 0                                               0112234555555544


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhCCCcchhh-hhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHH
Q 012500          252 LGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMM-FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  330 (462)
Q Consensus       252 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  330 (462)
                      ...++..........+.|.++++..+.++.... .........+++.++.|++.||+++|     +.+............
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~-----~~~~~~~~~~~~~~~  280 (375)
T TIGR00899       206 VACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKR-----RLMLLAALAGVAFYT  280 (375)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch-----hHHHHHHHHHHHHHH
Confidence            444444444445566788898888888865543 33444455677888999999999988     655554444443333


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHH
Q 012500          331 TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTL  410 (462)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  410 (462)
                      .....++.+.......+.+++.+...+.......+..| ++++++.++.+...+. |..++|.+.|.+.|..| ++..+.
T Consensus       281 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-g~~~g~~~~g~~~~~~g-~~~~~~  357 (375)
T TIGR00899       281 GLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRV-GWIIAGSVGGILAERWS-YHAVYW  357 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcc-chhHHH
Confidence            33334455555555555566666555555555556554 4567999999766665 99999999999999876 767777


Q ss_pred             HHHHHHHHHHHHH
Q 012500          411 ALTSIFFLAAGIW  423 (462)
Q Consensus       411 ~~~~~~~~~~~~~  423 (462)
                      ..+.+.+.+.++.
T Consensus       358 ~~~~~~~~~~~~~  370 (375)
T TIGR00899       358 FAIVMLIVALFCL  370 (375)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666555544443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=100.00  E-value=4.3e-32  Score=253.58  Aligned_cols=319  Identities=14%  Similarity=0.100  Sum_probs=233.6

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccc
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS  104 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~  104 (462)
                      ++.+..+.+.  ..+.+.++..+.+++.|++ ||+|||+++..+.++.+++.+.+.++++++.+++.|+++|++.+...|
T Consensus        41 ~g~s~~~~gl--~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~  118 (400)
T PRK11646         41 LGWAAVMVGI--ALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDP  118 (400)
T ss_pred             hCCcHHHHHH--HHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            6777888666  8899999999999999999 999999999999999999999999999999999999999999998889


Q ss_pred             cccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCccc
Q 012500          105 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAES  184 (462)
Q Consensus       105 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  184 (462)
                      ...+++.|++|+++|++++++.....++|..+||.+++.+. .+|||+.|++.++..++..++..+..||...      +
T Consensus       119 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~------~  191 (400)
T PRK11646        119 PRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL------S  191 (400)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc------c
Confidence            89999999999999999999999999999999999999998 6799999999988776665555555454210      0


Q ss_pred             cccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 012500          185 GKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAY  264 (462)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (462)
                      ++..                                            +..+++++++++|.++...+..+.........
T Consensus       192 ~~~~--------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (400)
T PRK11646        192 TVRT--------------------------------------------PVREGMTRVLRDKRFVTYVLTLTGYYMLAVQV  227 (400)
T ss_pred             ccch--------------------------------------------hhHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence            0000                                            00123556778887776555444444433445


Q ss_pred             HHHhhHHHHHHhCCCcchhhhhhhHHHhhhhhhhhhhHHHhh-hccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 012500          265 SYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQ-MGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLA  343 (462)
Q Consensus       265 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (462)
                      ..+.|.|.++..+.+.......+...+....+....+++.|| ++.+     +.+..+..+...........++.+....
T Consensus       228 ~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~  302 (400)
T PRK11646        228 MLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLE-----HRLMAGLLIMSLSMFPIGMVSNLQQLFT  302 (400)
T ss_pred             HHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-----HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            567899988876643222233344444444444444555554 4433     3344444444443333334445544445


Q ss_pred             HHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhc
Q 012500          344 LFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  403 (462)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g  403 (462)
                      ...+.+.+.+...+.......+..|+++|+++.|+.+...+. |..++|.+.|++.|+.+
T Consensus       303 ~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~ig~~l~G~l~~~~~  361 (400)
T PRK11646        303 LICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLAL-GGAIGYIGGGWLFDLGK  361 (400)
T ss_pred             HHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHH-HHHhcccchHHHHHHHh
Confidence            555566666666777788888899999999999999766666 99999999999999864

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3e-32  Score=249.59  Aligned_cols=391  Identities=14%  Similarity=0.087  Sum_probs=268.7

Q ss_pred             ccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhcc---chhHHHHHHHHHhhcccccccccc
Q 012500           31 LAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSS---FDFWSIAICRMLVGVGEASFISLA  106 (462)
Q Consensus        31 ~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~  106 (462)
                      .+..+|...+.+.+|.++++...+.+ ||+|||..+.++.++..++.++..++   +++.+++++|++.|+..|......
T Consensus        58 ~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~  137 (485)
T KOG0569|consen   58 LDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLV  137 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHH
Confidence            34446899999999999999999999 99999999999998888888877764   689999999999999999999999


Q ss_pred             cchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHH--HhhcccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCccc
Q 012500          107 APFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG--VVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAES  184 (462)
Q Consensus       107 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~--~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  184 (462)
                      +.++.|..|.+.||......+.+..+|.+++..++.  .+.+...|++.+....+++++..+... +.||+|++.-.++.
T Consensus       138 pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~-~~PESPk~Ll~~k~  216 (485)
T KOG0569|consen  138 PMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLP-FLPESPKYLLIKKG  216 (485)
T ss_pred             HHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHh-cCCCCcchHHHHcC
Confidence            999999999999999999999999999999977763  444566799999999888766655544 45999987643222


Q ss_pred             cccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHH-----HHHH
Q 012500          185 GKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI-----AYNF  259 (462)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  259 (462)
                      + +.+.++..+..+..++.++..++..++.++.+.++..           ..+++++++++..+.-....+     ....
T Consensus       217 ~-~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~-----------~~sl~~~~~~~~lR~~~~i~~~v~~~qq~s  284 (485)
T KOG0569|consen  217 D-EEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKK-----------QISLRQLLKNPTLRRPLLIGIVVSFAQQFS  284 (485)
T ss_pred             C-HHHHHHHHHHHhCCCcchhHHHHHHHHHHHhcccccc-----------CCcHHHHhcCcchhHHHHHHHHHHHHHHhc
Confidence            1 1222222222222222222222222222111111100           125667777766554332222     2222


Q ss_pred             HHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHh---
Q 012500          260 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL---  335 (462)
Q Consensus       260 ~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  335 (462)
                      +.+....|...++.+ .|.+.... ..........++.++++.++.||.|||     ++++.+..++.+..+++...   
T Consensus       285 Gi~ai~~Yst~i~~~-aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRR-----pLll~~~~~~~~~~~~~~~~~~l  358 (485)
T KOG0569|consen  285 GINAIFFYSTSIFKT-AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRR-----PLLLISLSLMAVALLLMSIALFL  358 (485)
T ss_pred             CcceeHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666666666 45665544 455677888999999999999999999     88877766666554443321   


Q ss_pred             hh---hH---HHHHHHHHHHHHHHhccccceeeeecc-CCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHH
Q 012500          336 SS---LY---GFLALFTVGELLVFATQAPVNYVCLHS-VKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKT  408 (462)
Q Consensus       336 ~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~  408 (462)
                      .+   .|   ..++..++..+.++.+.+++.+.+..| +|++.|+.+.++.....+. ..++-...+..+.+..|.  ..
T Consensus       359 ~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~-~~fiv~~~fp~l~~~~g~--~~  435 (485)
T KOG0569|consen  359 SNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWL-SNFIVGFAFPPLQNVIGP--YV  435 (485)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcc--hh
Confidence            11   11   234556666677777777777666555 7778999999999766666 777788899999998886  23


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcc-ccccchhhhcccCc
Q 012500          409 TLALTSIFFLAAGIWFVGIFLKS-IDKFNEDGENQISL  445 (462)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  445 (462)
                      ++.+.+.  +.....+.++++|| |+|+.+|+.++.++
T Consensus       436 filF~i~--~~~~~i~~~~~lPETkgr~~~eI~~~~~~  471 (485)
T KOG0569|consen  436 FILFVIP--LAIFLIYLYRYLPETKGRTPYEIIEELEK  471 (485)
T ss_pred             hHHHHHH--HHHHHHHHHHhCcccCCCCHHHHHHHHHh
Confidence            4433333  33344455667887 77887776665443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=100.00  E-value=1.7e-31  Score=246.17  Aligned_cols=335  Identities=13%  Similarity=0.014  Sum_probs=252.5

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHhhccc
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAICRMLVGVGE   99 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~   99 (462)
                      +++|++|.++  +.+.+.+++.+..++.|++ ||+|.|+++..+.+++++.++..+++     +|++.+++.|++.|++ 
T Consensus        65 ~~ls~~q~g~--l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-  141 (462)
T PRK15034         65 FNFTTDQLFL--LTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-  141 (462)
T ss_pred             cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-
Confidence            7888888655  9999999999999999999 99999999999999999999999987     8999999999999998 


Q ss_pred             ccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhh------------------cccchHHHHHHHHHHH
Q 012500          100 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG------------------SHLNWRYAFWGEAILM  161 (462)
Q Consensus       100 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~------------------~~~gwr~~f~~~~~~~  161 (462)
                      +..++.....+++|+|+++||+++|+.....++|..+++++...+.                  +..+||.++++..++.
T Consensus       142 g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~  221 (462)
T PRK15034        142 GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLL  221 (462)
T ss_pred             HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHH
Confidence            6688899999999999999999999997777777766655554322                  1345898888888888


Q ss_pred             HHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHH
Q 012500          162 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL  241 (462)
Q Consensus       162 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (462)
                      ++..++.++..++.+.      + +..                                              .++.++.
T Consensus       222 iv~~i~~~~~~~~~~~------~-~~~----------------------------------------------~~~~~~v  248 (462)
T PRK15034        222 AIATIAAWSGMNDIAS------S-RAS----------------------------------------------IADQLPV  248 (462)
T ss_pred             HHHHHHHHHhCCCccc------c-ccC----------------------------------------------HHHHHHH
Confidence            7777777766543211      0 000                                              1345678


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHH
Q 012500          242 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSA  320 (462)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  320 (462)
                      +|+|..|...+.+++.+..+.++..++|.|.++.+...  .. ....+..+...+.++++|+++||+|++     +.+..
T Consensus       249 lk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~~~--~~l~~~~l~~l~~~l~rplgG~LADRiG~~-----~vl~~  321 (462)
T PRK15034        249 LQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFPDV--NILRLAFFGPFIGAIARSVGGAISDKFGGV-----RVTLI  321 (462)
T ss_pred             hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHHHHHHHHHHhhHHHHHhcCch-----HHHHH
Confidence            99999999999999988889899999999998866322  22 223445677788899999999999998     66665


Q ss_pred             HHHHHHHHHHH-HHHh-----hhhHHHHHHHHHHHHHHHhccccceeeeeccCCc---------------------chhh
Q 012500          321 ATFLGAISCLT-AFCL-----SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP---------------------SLRA  373 (462)
Q Consensus       321 ~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~  373 (462)
                      ......+.... ....     .+.+...+.+....++.+......+-.+.+.+|+                     ++.|
T Consensus       322 ~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g  401 (462)
T PRK15034        322 NFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETA  401 (462)
T ss_pred             HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHH
Confidence            55444433322 1111     1334444444445566666666777677666653                     1567


Q ss_pred             HHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHHHHHHHHHH
Q 012500          374 LSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  424 (462)
Q Consensus       374 ~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  424 (462)
                      .+.|+.. ..+.+|+++-|.+.|...+.+|++...++.+....+++..+.+
T Consensus       402 ~v~G~v~-a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w  451 (462)
T PRK15034        402 AALGFIS-AIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW  451 (462)
T ss_pred             HHHHHHH-HHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence            8888884 5555599999999999999999998888888777666665554

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=100.00  E-value=5.3e-32  Score=256.64  Aligned_cols=364  Identities=12%  Similarity=0.056  Sum_probs=245.9

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhcc----chhHHHHHHHHHhhcccc
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSS----FDFWSIAICRMLVGVGEA  100 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~g  100 (462)
                      .+.++.+.++  ..+.+.++..+++++.|++ ||+|||+++..+.++.+++.++.++.    ++++.+.+.|++.|++.+
T Consensus        56 ~g~s~~~~g~--~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g  133 (438)
T TIGR00712        56 QGFSKGELGF--ALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQG  133 (438)
T ss_pred             cCCCHhHhHH--HHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhh
Confidence            4778888555  9999999999999999999 99999999999999999999887764    467788899999999999


Q ss_pred             cccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhh-cccchHHHHHHHHHHHHHHHHHHhhccccccCCC
Q 012500          101 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF  179 (462)
Q Consensus       101 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~  179 (462)
                      ..++.....+.|++|+++|++++++.+.+.++|..+++.+.+... ++.+||+.|++.++++++..+..+++.||++++.
T Consensus       134 ~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~  213 (438)
T TIGR00712       134 MGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSC  213 (438)
T ss_pred             cchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhc
Confidence            888888899999999999999999999999999999988776544 4579999999999988887777777777654332


Q ss_pred             CCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHH
Q 012500          180 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF  259 (462)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (462)
                      +.++.++..          ++...    +. .++    ++++       .+.++.  ..+.+++++.+|...+..++...
T Consensus       214 ~~~~~~~~~----------~~~~~----~~-~~~----~~~~-------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  265 (438)
T TIGR00712       214 GLPPIEEYR----------NDYPD----DY-NEK----AEQE-------LTAKEI--FMQYVLPNKLLWYIAIANVFVYL  265 (438)
T ss_pred             CCCCchhcc----------ccccc----cc-ccc----cccc-------cchHHH--HHHHHccCchHHHHHHHHHHHHH
Confidence            111100000          00000    00 000    0000       000000  12346788989888777777777


Q ss_pred             HHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHH-HHHHHHHHHHHh--
Q 012500          260 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF-LGAISCLTAFCL--  335 (462)
Q Consensus       260 ~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--  335 (462)
                      ..+++.+|.|.|+++..|.++... .......+.++++.++.|++.||++++++   ........ ............  
T Consensus       266 ~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  342 (438)
T TIGR00712       266 LRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNR---GATGVFFMTLVTIAVIVYWMNPA  342 (438)
T ss_pred             HHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc---cHHHHHHHHHHHHHHHHHHhcCC
Confidence            777888999999999888886554 44466778889999999999999965421   22111111 111111111111  


Q ss_pred             hhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHH
Q 012500          336 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  415 (462)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  415 (462)
                      .+.+......+..+++.............+..|++.|+++.|+.+...+..|.+++|.+.|.+.|..| +...+......
T Consensus       343 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g-~~~~~~~~~~~  421 (438)
T TIGR00712       343 GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGG  421 (438)
T ss_pred             CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc-chHHHHHHHHH
Confidence            12222222222233322111111123456778889999999999766666345789999999999876 77777766665


Q ss_pred             HHHHHHHH
Q 012500          416 FFLAAGIW  423 (462)
Q Consensus       416 ~~~~~~~~  423 (462)
                      .+++.+..
T Consensus       422 ~~~~~~~~  429 (438)
T TIGR00712       422 SILAVILL  429 (438)
T ss_pred             HHHHHHHH
Confidence            54444443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=100.00  E-value=1.1e-31  Score=251.85  Aligned_cols=322  Identities=9%  Similarity=0.006  Sum_probs=230.2

Q ss_pred             ccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhccccccc
Q 012500           25 FLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFI  103 (462)
Q Consensus        25 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~  103 (462)
                      +++.+..+.+.  ..+.+.+++.+++++.|.+ ||+|||+++..+.++++++++++++++|++.++++|+++|++.+...
T Consensus        45 ~~~~~~~~~~~--~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~  122 (413)
T PRK15403         45 DFNADVSLAPA--SVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIA  122 (413)
T ss_pred             HhCCCHHHHHH--HHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence            36777777545  8999999999999999999 99999999999999999999999999999999999999999998777


Q ss_pred             ccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCcc
Q 012500          104 SLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAE  183 (462)
Q Consensus       104 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  183 (462)
                      +....++.|++|+++|++++++...+..+|..+||.+++.+.++.|||+.|++.++..++..+..++..||+++..   +
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~---~  199 (413)
T PRK15403        123 TVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRG---A  199 (413)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcccc---C
Confidence            7778889999999999999999999999999999999999998899999999999887777665555567643210   0


Q ss_pred             ccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 012500          184 SGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGA  263 (462)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (462)
                      + +..                                          .+...++++++++||.++...+...+.......
T Consensus       200 ~-~~~------------------------------------------~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~  236 (413)
T PRK15403        200 V-PFS------------------------------------------AKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMS  236 (413)
T ss_pred             C-CCC------------------------------------------hHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            0 000                                          000123567888999999988877777777778


Q ss_pred             HHHHhhHHHHHHhCCCcchhhhh-hhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHH---HHHHHHHHHH--HHhhh
Q 012500          264 YSYWGPKAGYNIYHMSNADMMFG-GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT---FLGAISCLTA--FCLSS  337 (462)
Q Consensus       264 ~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~  337 (462)
                      +..+.|.++++.+|.++....+. .....+.+++..+.+++.++..++     +......   .++.......  ...++
T Consensus       237 ~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~-----~~~~~~~~~~~ig~~l~~~~~~~~~~~  311 (413)
T PRK15403        237 WVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEP-----RFIWRAVPIQLVGLALLIVGNLLWPHV  311 (413)
T ss_pred             HHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch-----hHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            88889999999888887665433 344556666666666665443332     2211111   1111111111  11222


Q ss_pred             hHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhh
Q 012500          338 LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  401 (462)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~  401 (462)
                      .+..+...++.+++.+...+....... .-.+..+|++.++.+..... +...++...+++.+.
T Consensus       312 ~~~~~~~~~l~~~G~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~-~~~~~~~~~g~~~~~  373 (413)
T PRK15403        312 WLWSVLGTSLYAFGIGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILM-VMAVSVEIGRWLWFN  373 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHc
Confidence            222345556666666666655553221 11122468888888666555 667788888888776

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.2e-33  Score=258.12  Aligned_cols=365  Identities=14%  Similarity=0.138  Sum_probs=272.5

Q ss_pred             ccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccc--hhHHHHHHHHHhhccccc
Q 012500           25 FLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEAS  101 (462)
Q Consensus        25 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~  101 (462)
                      +++.++.+.+.  +.++++.|+++++.+.|++ ||+|.|+++..+.++.++++++..++.  +++.+++.|++||++.|.
T Consensus        67 ~~~ws~~~k~~--i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   67 EYDWSSTEKGL--IFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             eecCCHHHHHH--HHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            35566666555  9999999999999999999 999999999999999999999999875  556789999999999999


Q ss_pred             ccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcc-cchHHHHHHHHHHHHHHHHHHhhccccccCCCC
Q 012500          102 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA  180 (462)
Q Consensus       102 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~  180 (462)
                      .+|+...+.++|.|++||++..++...+..+|.+++.+++|++.+. .||+++|++.++.+++..++++++..++|.+++
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~  224 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHP  224 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence            9999999999999999999999999999999999999999999998 999999999999999999888888765544321


Q ss_pred             CccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHH
Q 012500          181 PAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFV  260 (462)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (462)
                      .-.+ ++.                   +.+++.+.+.+.++           ....+++++++++.+|...+..++.+..
T Consensus       225 ~is~-~El-------------------~~I~~~k~~~~~~~-----------~~~vP~~~i~ts~~vwai~~~~f~~~~~  273 (466)
T KOG2532|consen  225 NISE-KEL-------------------KYIEKGKSEAHVKK-----------KPPVPYKAILTSPPVWAIWISAFGGNWG  273 (466)
T ss_pred             CCCH-HHH-------------------HHHHhcccccccCC-----------CCCCCHHHHHcCHHHHHHHHHHHHHHHH
Confidence            1111 100                   00000000000000           0124789999999999999999999999


Q ss_pred             HHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhcccc---ccchhHHHH-HHHHHHHHHHHHHHh
Q 012500          261 IGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI---SNAFKLLSA-ATFLGAISCLTAFCL  335 (462)
Q Consensus       261 ~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~  335 (462)
                      .+.+..|+|.|+++..+++..+. .+.+++.+...+..+++|.++||+.+|.   ..+|++.-. +....++.++.+.+.
T Consensus       274 ~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~  353 (466)
T KOG2532|consen  274 FYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT  353 (466)
T ss_pred             HHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec
Confidence            99999999999999999996665 5668999999999999999999997751   113455433 333333344444444


Q ss_pred             hh--hHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHh-h-hcchhHHHHH
Q 012500          336 SS--LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD-H-VNNWRKTTLA  411 (462)
Q Consensus       336 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~-~-~g~~~~~~~~  411 (462)
                      +.  .+..++++.+.....+...+. .........|++.+..+|+.+...+. +++++|.+.|.+.. . ..+|+..|++
T Consensus       354 ~~~~~~~a~~~l~~~~~~~g~~~~G-f~~~~~~~apq~a~~l~g~~~~~~~~-~~~~~P~~vg~~~~~~t~~eW~~VF~i  431 (466)
T KOG2532|consen  354 SDEHRLLAVILLTIAIGLSGFNISG-FYKNHQDIAPQHAGFVMGIINFVGAL-AGFIAPLLVGIIVTDNTREEWRIVFLI  431 (466)
T ss_pred             CCCcchHHHHHHHHHHHHcccchhh-hHhhhhhccchHHHHHHHHHHHHHHH-HHHHHHHheeeEeCCCCHHHHHHHHHH
Confidence            32  223333333333333333222 22333332578899999999866666 88899999999984 1 2368888888


Q ss_pred             HHHHHHHHHHHHH
Q 012500          412 LTSIFFLAAGIWF  424 (462)
Q Consensus       412 ~~~~~~~~~~~~~  424 (462)
                      .+++.+++.+.+.
T Consensus       432 ~a~i~~~~~i~f~  444 (466)
T KOG2532|consen  432 AAGILIVGNIIFL  444 (466)
T ss_pred             HHHHHHHhchhee
Confidence            8777666664443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=1.5e-32  Score=264.58  Aligned_cols=383  Identities=15%  Similarity=0.086  Sum_probs=230.9

Q ss_pred             ccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhcc------------chhHHHHHHHH
Q 012500           27 SLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSS------------FDFWSIAICRM   93 (462)
Q Consensus        27 ~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~   93 (462)
                      +.++.+.  ++..+.+.++..+++++.|++ ||+|||+++..+.+++.++.+.++++            ++++.++++|+
T Consensus        51 ~~~~~~~--~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~  128 (479)
T PRK10077         51 SAANSLL--GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRI  128 (479)
T ss_pred             cCChhHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHH
Confidence            5555664  459999999999999999999 99999999999999999998887763            23567889999


Q ss_pred             HhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhh--------cccchHHHHHHHHHHHHHHH
Q 012500           94 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFA  165 (462)
Q Consensus        94 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~--------~~~gwr~~f~~~~~~~~~~~  165 (462)
                      ++|++.|...+...++++|++|+++|++++++.+.+..+|.++++.+++.+.        +++|||+.|++.++..++..
T Consensus       129 l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~  208 (479)
T PRK10077        129 IGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFL  208 (479)
T ss_pred             HHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988776543        45799999999888777765


Q ss_pred             HHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhh
Q 012500          166 VLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEK  245 (462)
Q Consensus       166 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (462)
                      +. .+++||++++...+++.++.  +...++....++   ..+..++..+...++              ....+..+...
T Consensus       209 ~~-~~~l~~s~~~l~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~--------------~~~~~~~~~~~  268 (479)
T PRK10077        209 ML-LYFVPETPRYLMSRGKQEQA--EGILRKIMGNTL---ATQALQEIKHSLDHG--------------RKTGGKLLMFG  268 (479)
T ss_pred             HH-HHcCCCCcHHHHHcCCHHHH--HHHHHHHcCChh---HHHHHHHHHHHHHHh--------------hhhhhhhcchh
Confidence            44 45568775432111111100  000000000000   000000000000000              00000111100


Q ss_pred             HHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHH
Q 012500          246 VYVVN---VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA  321 (462)
Q Consensus       246 ~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  321 (462)
                      .....   ....+......+...++.|.+.++ .+.+.... .......+..+++.++.++++||++||     +.+..+
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r-----~~~i~~  342 (479)
T PRK10077        269 VGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK-----PLQIIG  342 (479)
T ss_pred             HHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-----HHHHHh
Confidence            00000   011111112233445667776655 56654333 334556778889999999999999998     766666


Q ss_pred             HHHHHHHHHHHHHh--hhhH--HHHHHHHHHHHHHHhcc-ccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHH
Q 012500          322 TFLGAISCLTAFCL--SSLY--GFLALFTVGELLVFATQ-APVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVG  396 (462)
Q Consensus       322 ~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g  396 (462)
                      ..+..+........  .+..  ......++.+.+.+... +.....+.+.+|++.|+++.|+.+...+. +.++++.+.+
T Consensus       343 ~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-g~~~~~~~~p  421 (479)
T PRK10077        343 ALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWI-ANYFVSWTFP  421 (479)
T ss_pred             HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHH-HHHHHHHHhH
Confidence            65555544333221  1111  22223333333443333 44567778888889999999999655555 7777876666


Q ss_pred             HHH------hhhcchhHHHHHHHHHHHHHHHHHHHHHhhcc-ccccchhhhc
Q 012500          397 VLQ------DHVNNWRKTTLALTSIFFLAAGIWFVGIFLKS-IDKFNEDGEN  441 (462)
Q Consensus       397 ~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  441 (462)
                      .+.      |..+ +...+++.++..+++.++.+  ...+| |++..+|.++
T Consensus       422 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~e~~~~~~~~~~~  470 (479)
T PRK10077        422 MMDKNSWLVAHFH-NGFSYWIYGCMGVLAALFMW--KFVPETKGKTLEEMEA  470 (479)
T ss_pred             HHHhccchhhhcc-CccHHHHHHHHHHHHHHHHH--hccccCCCCCHHHHHH
Confidence            544      4444 34455555544333333322  23344 4444444433

>PRK10504 putative transporter; Provisional

Probab=100.00  E-value=8.4e-32  Score=258.49  Aligned_cols=366  Identities=13%  Similarity=0.075  Sum_probs=255.1

Q ss_pred             HhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 012500           15 ILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRM   93 (462)
Q Consensus        15 ~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~   93 (462)
                      .+|.+.++   ++.++.+.++  ..+.+.++..++.++.|++ ||+|||+++..+.++.+++.++++++++++.+++.|+
T Consensus        32 ~~p~~~~~---~g~s~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  106 (471)
T PRK10504         32 ALPSMAQS---LGESPLHMHM--VIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARV  106 (471)
T ss_pred             HHHHHHHH---hCcCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            36755554   7888877555  8899999999999999999 9999999999999999999999999999999999999


Q ss_pred             HhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccc
Q 012500           94 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  173 (462)
Q Consensus        94 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p  173 (462)
                      ++|++.+...+...+++.|++|+++|+++.++.....++|..+||.+++.+.++.|||+.|++......+..+......|
T Consensus       107 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~  186 (471)
T PRK10504        107 LQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP  186 (471)
T ss_pred             HHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999988777666666655555


Q ss_pred             cccCCCCCcccccccccccc------c-cccccccccccccccccch--------hhhhhhhccccccchhhhhcchhhH
Q 012500          174 LQLKGFAPAESGKAQVVASV------S-EGSEASNLNDHVSEDISDQ--------ASERSIKSIGESRFLNQLSQFSQDT  238 (462)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  238 (462)
                      +.+...   ++.+.......      . ...++.+............        .....++.+.+        +...+.
T Consensus       187 ~~~~~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~  255 (471)
T PRK10504        187 NYTMQT---RRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNN--------RALFSL  255 (471)
T ss_pred             CccccC---CCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCC--------CCccCH
Confidence            432111   00000000000      0 0000000000000000000        00000000000        001123


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchhh-hhhhHHHhhhhhhhhhhHHHhhhccccccchhH
Q 012500          239 KVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMM-FGGVTIVCGIVGTISGGFILDQMGATISNAFKL  317 (462)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~  317 (462)
                       ++++||.++......++..........+.|.|++...|.++.... ......++.+++.++.+++.||+++|     +.
T Consensus       256 -~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~-----~~  329 (471)
T PRK10504        256 -KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR-----RV  329 (471)
T ss_pred             -HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----HH
Confidence             478899888888777777777767777889999887788765553 33555666677778899999999998     77


Q ss_pred             HHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhH
Q 012500          318 LSAATFLGAISCLTAFCL---SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPL  394 (462)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  394 (462)
                      +..+..+..+........   ++.+.......+.+++.+...+.......+.+|++.++.+.++.++.... |..+++.+
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~ig~~i  408 (471)
T PRK10504        330 LVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQL-SMSIGVTI  408 (471)
T ss_pred             HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHH-HHHHHHHH
Confidence            665555444443333322   22222233344455666666667777778889999999999999766666 99999999


Q ss_pred             HHHHHhhhc
Q 012500          395 VGVLQDHVN  403 (462)
Q Consensus       395 ~g~l~~~~g  403 (462)
                      .|.+.+..|
T Consensus       409 ~g~ll~~~g  417 (471)
T PRK10504        409 AGLLLGLFG  417 (471)
T ss_pred             HHHHHHHhh
Confidence            999988765

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=2e-31  Score=249.81  Aligned_cols=319  Identities=16%  Similarity=0.126  Sum_probs=241.8

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccc
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS  104 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~  104 (462)
                      ++.++.+.+.  ..+.+.++..+++++.|++ ||+|||+++..+.++.+++.+.++++++++.+++.|++.|++.+...+
T Consensus        35 ~g~s~~~~g~--~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  112 (385)
T TIGR00710        35 LSTPASIVQM--TLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSV  112 (385)
T ss_pred             hCCCHHHHHH--HHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHH
Confidence            7888888655  9999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             cccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCccc
Q 012500          105 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAES  184 (462)
Q Consensus       105 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  184 (462)
                      ...+++.|++|+++|++++++.+....+|..+++.+++.+.++.+||+.|++.++..++..+..++..||+++..    +
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  188 (385)
T TIGR00710       113 ISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYE----A  188 (385)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc----c
Confidence            999999999999999999999999999999999999999999999999999998887777766666655532110    0


Q ss_pred             cccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 012500          185 GKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAY  264 (462)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (462)
                      ++..                                           ++..++.++.++++.++...+............
T Consensus       189 ~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (385)
T TIGR00710       189 RIQI-------------------------------------------STYFETFLLLLKSKMFWGYALIYGASFGGFFAF  225 (385)
T ss_pred             cCCH-------------------------------------------HHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence            0000                                           000124566778888888777666666667777


Q ss_pred             HHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHh-----hhh
Q 012500          265 SYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL-----SSL  338 (462)
Q Consensus       265 ~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  338 (462)
                      ..+.|.++++.++.++... .......++.+++.++.+++.||+++|     +.+.....+...........     +..
T Consensus       226 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (385)
T TIGR00710       226 FSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAK-----SLLRMGLILFAVSAVLLEITAILGLGSW  300 (385)
T ss_pred             HHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence            7888999988888886555 344667788899999999999999987     55544443333322222211     122


Q ss_pred             HHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHh
Q 012500          339 YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  400 (462)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~  400 (462)
                      ........+.+++.+...+.......+..| +.++++.++.+......|.+.+| +.+.+.+
T Consensus       301 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~-~~~~~~~  360 (385)
T TIGR00710       301 AMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGY-LVSLIHG  360 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHH-HHHhccc
Confidence            233334455566666666666666666654 67899999987776665665555 5554444

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=100.00  E-value=3.2e-31  Score=248.43  Aligned_cols=323  Identities=14%  Similarity=0.048  Sum_probs=229.5

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML   94 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l   94 (462)
                      +|.+.++   ++.++.+.+.  ..+.+.++..+++++.|++ ||+|||+++..+.++..++.+++.+++|++.+++.|++
T Consensus        26 lp~~~~~---~~~s~~~~~~--~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l  100 (392)
T PRK10473         26 LPRIAAD---LNASEAQLHI--AFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFL  100 (392)
T ss_pred             HHHHHHH---hCCCHHHHHH--HHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            5644444   7888877555  9999999999999999999 99999999999999999999999999999999999999


Q ss_pred             hhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhcccc
Q 012500           95 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  174 (462)
Q Consensus        95 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  174 (462)
                      +|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+||+.|++.++++++..++.++..||
T Consensus       101 ~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  180 (392)
T PRK10473        101 QGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKE  180 (392)
T ss_pred             HHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999998999999999999999999999999999999999999999998888899999999988887777776666665


Q ss_pred             ccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHH
Q 012500          175 QLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGY  254 (462)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (462)
                      +++..    +++..                        .                    ..+..++.++++.++...+..
T Consensus       181 ~~~~~----~~~~~------------------------~--------------------~~~~~~~~~~~~~~~~~~~~~  212 (392)
T PRK10473        181 TRPAR----APAAS------------------------S--------------------KPRENSESLLNRFFLSRLVIT  212 (392)
T ss_pred             CCCcc----cCCcc------------------------c--------------------hHHHHHHHHhCHHHHHHHHHH
Confidence            42110    00000                        0                    001233556777766555544


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHH
Q 012500          255 IAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF  333 (462)
Q Consensus       255 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (462)
                      .+.......+..+.|.++++..|.++... .......++.+++.++.+++.||+++|     +.+..+..+.........
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~-----~~~~~~~~~~~~~~~~~~  287 (392)
T PRK10473        213 TLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPR-----TLMLTSQVLFLAAGITLA  287 (392)
T ss_pred             HHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHHHH
Confidence            44444444566677888888888886554 344667788889999999999999988     666655554444444433


Q ss_pred             HhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchh-hHHHHHHHHHHhhhccccchhHHHHHHhhhc
Q 012500          334 CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLR-ALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  403 (462)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g  403 (462)
                      ..++.+..+....+...+.+...+...  ..+..|.++| +.+.++    .+ ++..+++.+.+++.+..|
T Consensus       288 ~~~~~~~~~~~~~l~~~g~~~~~~~~~--~~~~~~~~~~~g~~~~~----~~-~~~~~g~~~~~~l~~~~g  351 (392)
T PRK10473        288 LSPSHAVSLFGITLICAGFSVGFGVAM--SQALGPFSLRAGVASST----LG-IAQVCGSSLWIWLAAVLG  351 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHhccCcccccHHHHH----HH-HHHHHHHHHHHHHHHHhc
Confidence            333333333333333333333332222  1222333333 333333    23 366677878888888776

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=3e-32  Score=263.14  Aligned_cols=367  Identities=13%  Similarity=0.123  Sum_probs=265.3

Q ss_pred             HHHhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHH
Q 012500           13 GLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAIC   91 (462)
Q Consensus        13 ~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~   91 (462)
                      +..+|.+.++   ++.+..+.++  ..+.+.++..++.++.|++ ||+|||+++..+.++..++.+++++++|++.++++
T Consensus        22 ~~~~p~~~~~---~g~s~~~~~~--~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   96 (485)
T TIGR00711        22 NVAIPTIAGD---LGSSLSQVQW--VITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIF   96 (485)
T ss_pred             HHHHHHHHHh---cCCChhhhhH--HHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            3336655554   7777777555  9999999999999999999 99999999999999999999999999999999999


Q ss_pred             HHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhc
Q 012500           92 RMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  171 (462)
Q Consensus        92 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  171 (462)
                      |+++|++.+...+...+++.|++|+++|+++++++..+..+|..+||.+++++.++++||+.|++.+.++++..++.++.
T Consensus        97 ~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~  176 (485)
T TIGR00711        97 RVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFI  176 (485)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988887777766666


Q ss_pred             cccccCCCCCcccccccccc-------ccccccccccccccccccccchh---------hhhhhhccccccchhhhhcch
Q 012500          172 KPLQLKGFAPAESGKAQVVA-------SVSEGSEASNLNDHVSEDISDQA---------SERSIKSIGESRFLNQLSQFS  235 (462)
Q Consensus       172 ~p~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~  235 (462)
                      .|++++..  .++.++....       .......+.++.++..+......         .....+.+.+++        .
T Consensus       177 ~~~~~~~~--~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~  246 (485)
T TIGR00711       177 LPRDKPAA--SENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNP--------L  246 (485)
T ss_pred             cCCccccc--cCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCC--------c
Confidence            66532211  1111100000       00000000000000000000000         000000000000        1


Q ss_pred             hhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccc
Q 012500          236 QDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNA  314 (462)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~  314 (462)
                      .+ .++++++.++...+..++.....+....+.|.|+++..+.++.+. .......++.+++.++.|++.||+++|    
T Consensus       247 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~----  321 (485)
T TIGR00711       247 VD-LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPR----  321 (485)
T ss_pred             cC-HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH----
Confidence            11 256788888888877777788888888899999999888887655 444667788899999999999999998    


Q ss_pred             hhHHHHHHHHHHHHHHHHH-Hh---hhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhcccc
Q 012500          315 FKLLSAATFLGAISCLTAF-CL---SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVP  390 (462)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  390 (462)
                       +.+..+..+......... ..   .+.+.......+.+++.+...++......+..|+++++++.|+.+...+. |+.+
T Consensus       322 -~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~i  399 (485)
T TIGR00711       322 -KLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQL-GGSI  399 (485)
T ss_pred             -HHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHH-HHHH
Confidence             666655555554444433 11   23344455566677777776666777777888999999999999766665 9999


Q ss_pred             chhHHHHHHhh
Q 012500          391 SSPLVGVLQDH  401 (462)
Q Consensus       391 ~~~~~g~l~~~  401 (462)
                      ++.+.+.+.++
T Consensus       400 g~~i~g~~~~~  410 (485)
T TIGR00711       400 GTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHH
Confidence            99999999885

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=100.00  E-value=1.4e-32  Score=254.31  Aligned_cols=320  Identities=19%  Similarity=0.260  Sum_probs=240.9

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccc
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS  104 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~  104 (462)
                      ++.++.+.++  ..+.+.++..+++++.|++ ||+|||+++..+.++.+++.++..+++|++.+++.|++.|++.+...+
T Consensus        27 ~~~s~~~~~~--~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  104 (352)
T PF07690_consen   27 LGLSPSQIGL--LFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSP  104 (352)
T ss_dssp             STTTSHCHHH--HHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccc
Confidence            7788888555  9999999999999999999 999999999999999999977777778888999999999999999999


Q ss_pred             cccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCccc
Q 012500          105 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAES  184 (462)
Q Consensus       105 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  184 (462)
                      ...+++.|++|+++|++++++.+.+.++|.+++|.+++.+.++.+||+.|++.+++.++..++..++.++++++.+.+++
T Consensus       105 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~  184 (352)
T PF07690_consen  105 ASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESP  184 (352)
T ss_dssp             HHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SS
T ss_pred             cccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccccc
Confidence            99999999999999999999999999999999999999999999999999999998888877554555543322211111


Q ss_pred             cccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 012500          185 GKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAY  264 (462)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (462)
                      .+..                           .            +..++..+.++.+++++.+|......++........
T Consensus       185 ~~~~---------------------------~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (352)
T PF07690_consen  185 KESE---------------------------S------------KKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGF  225 (352)
T ss_dssp             TTTT-----------------------------------------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             cccc---------------------------c------------ccccccccccccccccchhhhhhhhhhHHHHHHHHh
Confidence            1100                           0            000000112456667777775555556666677778


Q ss_pred             HHHhhHHHHHHhCCC-cchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHH---HHhhhhH
Q 012500          265 SYWGPKAGYNIYHMS-NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA---FCLSSLY  339 (462)
Q Consensus       265 ~~~~p~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  339 (462)
                      ..+.|.|+.+.++.+ .... .......+..+++.++.+++.||++++     +................   ...++..
T Consensus       226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (352)
T PF07690_consen  226 SFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRR-----RRLLIAILLLILGALGLLLLPFSSSPV  300 (352)
T ss_dssp             HHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHHCCSHHHCHHH
T ss_pred             hcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----HHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            899999988888888 4444 445677788888899999999999886     33333333332222222   2223445


Q ss_pred             HHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccch
Q 012500          340 GFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  392 (462)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  392 (462)
                      ..+....+.+++.+...+.......+..|+++++++.|+.+...+. +..++|
T Consensus       301 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-~~~igP  352 (352)
T PF07690_consen  301 WLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSL-GGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHCC
Confidence            5556667778888888888999999999999999999999766665 777665

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=100.00  E-value=1.8e-31  Score=250.99  Aligned_cols=354  Identities=14%  Similarity=0.062  Sum_probs=243.8

Q ss_pred             HHHHHHHhhhhhhhccccccccccccchhhHHHHH---HHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccch
Q 012500            9 LCLIGLILKRSMKKKKFLSLRKLAAGSSVNVLEFT---VTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFD   84 (462)
Q Consensus         9 ~~~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~---~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~   84 (462)
                      .+.+++..+.+.++.. .+.++.+.+..+....+.   ++..+++++.|++ ||+|||+++..+.++..++.++++++++
T Consensus         9 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~   87 (394)
T TIGR00883         9 FYLYGFAAVLVFHTFF-PPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPS   87 (394)
T ss_pred             HHHHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCC
Confidence            3455555564444432 234455544422333333   3445789999999 9999999999999999999999999998


Q ss_pred             hH--------HHHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhh--------ccc
Q 012500           85 FW--------SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG--------SHL  148 (462)
Q Consensus        85 ~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~--------~~~  148 (462)
                      ++        .+++.|+++|++.+...+....++.|++|+++|+++.++.+.+..+|.++++.++..+.        +.+
T Consensus        88 ~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~  167 (394)
T TIGR00883        88 YATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEW  167 (394)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhcc
Confidence            75        47889999999999999999999999999999999999999999999999998876654        357


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccch
Q 012500          149 NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFL  228 (462)
Q Consensus       149 gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (462)
                      +||+.|++.+++.++.... ....||+++..+++++++                                 +.       
T Consensus       168 ~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------------------------------~~-------  206 (394)
T TIGR00883       168 GWRIPFLVSAVLVLIGLYL-RRNLEETPVFEKAQEKHK---------------------------------KK-------  206 (394)
T ss_pred             chHHHHHHHHHHHHHHHHH-HHhcCCChhHHHHHhccc---------------------------------cc-------
Confidence            8999999877655443322 222343221100000000                                 00       


Q ss_pred             hhhhcchhhHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHh
Q 012500          229 NQLSQFSQDTKVLLQEKV--YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILD  305 (462)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d  305 (462)
                            ..+.++.++++.  ++......++..........+.|.|+++..+.++... .......+...++.++.|++.|
T Consensus       207 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  280 (394)
T TIGR00883       207 ------RGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSD  280 (394)
T ss_pred             ------cCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  012334445444  5555555566666677778899999988888776554 4446677888899999999999


Q ss_pred             hhccccccchhHHHHHHHHHHHHH--HHHHH--hhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHH
Q 012500          306 QMGATISNAFKLLSAATFLGAISC--LTAFC--LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTV  381 (462)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (462)
                      |++||     +.+.....+.....  .....  .++.+.......+.+++.+...++....+.+.+|++.|+++.++.+.
T Consensus       281 r~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  355 (394)
T TIGR00883       281 RIGRR-----PVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYN  355 (394)
T ss_pred             HhchH-----HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhH
Confidence            99988     55543333222221  11111  13444445555666777777777888888999999999999998644


Q ss_pred             HHhhhccccchhHHHHHHhhhcchhHHHHHHHHH
Q 012500          382 SIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  415 (462)
Q Consensus       382 ~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  415 (462)
                      ..+..|..++|.+.|++.|+.|.+...++....+
T Consensus       356 ~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~  389 (394)
T TIGR00883       356 LAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL  389 (394)
T ss_pred             hHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence            5555588899999999999887655544444433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=100.00  E-value=2.6e-31  Score=250.86  Aligned_cols=350  Identities=13%  Similarity=0.102  Sum_probs=252.2

Q ss_pred             Hhhhhhhhccccccccccc---cchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHH
Q 012500           15 ILKRSMKKKKFLSLRKLAA---GSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAI   90 (462)
Q Consensus        15 ~~p~~~~~~~~~~~~~~~~---~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~   90 (462)
                      .+|.+.++   ++.+..+.   ..++..+.+.++..+++++.|++ ||+|||+++..+.++.+++.+++.+++|++.+++
T Consensus        36 ~l~~~~~~---~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (408)
T PRK09874         36 FLPLYVEQ---LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLI  112 (408)
T ss_pred             hHHHHHHH---hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            35655544   56665442   13558899999999999999999 9999999999999999999999999999999999


Q ss_pred             HHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhh
Q 012500           91 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  170 (462)
Q Consensus        91 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  170 (462)
                      .|++.|++.+ ..+....++.|++|+++|++++++...+..+|..++|.+++.+.+..+||+.|++.+++.++..+..++
T Consensus       113 ~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (408)
T PRK09874        113 LRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLF  191 (408)
T ss_pred             HHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999865 467778889999999999999999999999999999999999999899999999999887777666666


Q ss_pred             ccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHH
Q 012500          171 IKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN  250 (462)
Q Consensus       171 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (462)
                      ..||..+..   ++++..                                         +    .++..+.++++.++..
T Consensus       192 ~~~~~~~~~---~~~~~~-----------------------------------------~----~~~~~~~~~~~~~~~~  223 (408)
T PRK09874        192 CIRENFQPV---SKKEML-----------------------------------------H----MREVVTSLKNPKLVLS  223 (408)
T ss_pred             HhccCcccc---cchhhh-----------------------------------------H----HHHHHHhCcCCchHHH
Confidence            655532110   000000                                         0    0012234455555443


Q ss_pred             H-HHHHHHHHHHHHHHHHhhHHHHHHhCCCcch---h-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHH
Q 012500          251 V-LGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD---M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLG  325 (462)
Q Consensus       251 ~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  325 (462)
                      . ...............+.|.|..+..+.....   . .+.....++.+++.+..|++.||+++|     +.+.....+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~-----~~~~~~~~~~  298 (408)
T PRK09874        224 LFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPE-----KILITALIFS  298 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----hhHHHHHHHH
Confidence            2 2233334444455667777877754433211   1 222445667778888899999999988     6665555555


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcch
Q 012500          326 AISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNW  405 (462)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~  405 (462)
                      ....+.....++.+...+...+.+++.+...+.......+..+++.+++..++.+...+. |..++|.+.|.+.|..| +
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~~gp~~~G~l~~~~g-~  376 (408)
T PRK09874        299 VLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDI-GNVTGPLMGAAISANYG-F  376 (408)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHH-HHHhhHHHHHHHHhhcc-h
Confidence            444444444455555555666677777777777777777788889999999998666555 99999999999999876 7


Q ss_pred             hHHHHHHHHHHHHHHHHH
Q 012500          406 RKTTLALTSIFFLAAGIW  423 (462)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~  423 (462)
                      ...+...+++.+++.+..
T Consensus       377 ~~~f~~~~~~~l~~~~~~  394 (408)
T PRK09874        377 RAVFLVTAGVVLFNAVYS  394 (408)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            777777776666555444

>TIGR00897 2A0118 polyol permease family

Probab=100.00  E-value=6.7e-31  Score=246.45  Aligned_cols=349  Identities=13%  Similarity=0.152  Sum_probs=243.6

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhh---c-cchhHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCG---S-SFDFWSIAI   90 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~l~~   90 (462)
                      +|.++++   ++.++.+.+.  ..+.+.++..+++++.|++ ||+|||+++..+.++.+++.+++.   + .++++.+++
T Consensus        36 ~~~~~~~---~g~s~~~~g~--~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  110 (402)
T TIGR00897        36 LSPFLKA---LGLSPQQSAS--AFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILL  110 (402)
T ss_pred             HHHHHHH---hCCCHHHhHH--HHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHH
Confidence            4545544   6788888666  9999999999999999999 999999999999999998877553   3 358888999


Q ss_pred             HHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhh-hhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHh
Q 012500           91 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGV-ALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  169 (462)
Q Consensus        91 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  169 (462)
                      .|+++|++.+...+.....+.+++|+++|++++|+.+.+.++|. +++|.+++.+.+..||+..++......++..++.+
T Consensus       111 ~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  190 (402)
T TIGR00897       111 FYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIAL  190 (402)
T ss_pred             HHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence            99999999988888788889999999999999999999999997 68999999998888977666655443333333334


Q ss_pred             hccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHH
Q 012500          170 VIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV  249 (462)
Q Consensus       170 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (462)
                      ++.++.++    ++++++.                   +                     +.++..++++.++++|.++.
T Consensus       191 ~~~~~~~~----~~~~~~~-------------------~---------------------~~~~~~~~~~~~~~~~~~~~  226 (402)
T TIGR00897       191 FSNKDIFT----PQHMQTR-------------------E---------------------KFSELGKAATILFTNPNVLL  226 (402)
T ss_pred             hccCCCCC----cccccCC-------------------c---------------------chhhHHHHHHHHHcChhHHH
Confidence            43333110    0000000                   0                     00001123567788999988


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHH-HHHHHHHH
Q 012500          250 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLS-AATFLGAI  327 (462)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~~  327 (462)
                      ..+..++.....++..++.|.|.++ .+.++.+. .......++..++.+..|+++||++||     +... ...+....
T Consensus       227 ~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~-----~~~~~~~~l~~~~  300 (402)
T TIGR00897       227 GGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWM-----NTVRWFGGVGCGI  300 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-----hHHHHHHHHHHHH
Confidence            8877777777778888999998866 67776554 344667788899999999999999987     4332 22221211


Q ss_pred             HH-HHHHH----hhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhh
Q 012500          328 SC-LTAFC----LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  402 (462)
Q Consensus       328 ~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~  402 (462)
                      .. .+...    .++.+.......+.+++.+... +..... .+.+|++|+++.|+.+...+. +..++|.+.|.+.|..
T Consensus       301 ~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~-~~~~~~~~g~~~g~~~~~~~l-g~~~gp~i~g~l~~~~  377 (402)
T TIGR00897       301 FTLALYYIPQHFGHSFAVALIIAIALGIFLAGYV-PLAAVF-PTLAPKHKGAAMSVLNLSAGL-SAFLAPAIAVLFIGFF  377 (402)
T ss_pred             HHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHH-HHHHHH-HhhCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhc
Confidence            11 11111    1234444445555565555433 233343 345677899999999877766 8899999999999988


Q ss_pred             cchhHHHHHHHHHHHHHHHHH
Q 012500          403 NNWRKTTLALTSIFFLAAGIW  423 (462)
Q Consensus       403 g~~~~~~~~~~~~~~~~~~~~  423 (462)
                      | +...+++.+.+.+++.++.
T Consensus       378 g-~~~~~~~~a~~~~i~~~~~  397 (402)
T TIGR00897       378 G-AIGVVWIFAALYVVSAFLT  397 (402)
T ss_pred             c-hHHHHHHHHHHHHHHHHHH
Confidence            7 5566666665554444433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=100.00  E-value=5.8e-31  Score=245.43  Aligned_cols=347  Identities=13%  Similarity=0.058  Sum_probs=243.5

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccc
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS  104 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~  104 (462)
                      ++.++.+.  +++.+.+.+++.+.+|+.|++ ||+|||+++..+.++.+++++.++++++.   ++.|+++|++.+...|
T Consensus        33 ~~~s~~~~--~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~p  107 (393)
T PRK11195         33 LHYPDWSQ--PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSP  107 (393)
T ss_pred             cCCcHHHH--HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence            56666664  559999999999999999999 99999999999999999999888777664   7899999999999999


Q ss_pred             cccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCccc
Q 012500          105 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAES  184 (462)
Q Consensus       105 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  184 (462)
                      +..+++.|++|+++|++++++.+....+|.++||.+++.+.+. .|+..+.+.+...++. .+..+.+||++.+.++++.
T Consensus       108 a~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~-~~~~~~l~~~~~~~~~~~~  185 (393)
T PRK11195        108 AKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA-ALFNLFIPRLGARRPGQSW  185 (393)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHhcCCCCcccccccCC
Confidence            9999999999999999999999999999999999999999885 4888887776554333 3334455654321100000


Q ss_pred             cccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 012500          185 GKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAY  264 (462)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (462)
                       ++                         .               ...++..+..+.++++|.+........+........
T Consensus       186 -~~-------------------------~---------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  224 (393)
T PRK11195        186 -NP-------------------------I---------------ALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATL  224 (393)
T ss_pred             -CH-------------------------H---------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHH
Confidence             00                         0               000111223456677777766555444444445555


Q ss_pred             HHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 012500          265 SYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLA  343 (462)
Q Consensus       265 ~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (462)
                      ....|.++++.+|.++... .......++.+++.+..+++.||.+++     +.+..+.... .........++.+....
T Consensus       225 ~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~-----~~~~~g~~~~-~~~~~~~~~~~~~~~~~  298 (393)
T PRK11195        225 RFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVL-----RVLPAGILMG-LVVLLMALQHSLLPAYP  298 (393)
T ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-----chHHHHHHHH-HHHHHHHHHhHHHHHHH
Confidence            6667778888888887666 334667778888999999998887766     4444443332 22222233344454555


Q ss_pred             HHHHHHHHHHhccccceeeeeccCCcch-hhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Q 012500          344 LFTVGELLVFATQAPVNYVCLHSVKPSL-RALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGI  422 (462)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  422 (462)
                      ...+.+++.+...++..+...+..|++. +|++.++.+...+. +..++..+.+.+ +..| .+..+++..+..+....+
T Consensus       299 ~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~-~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~  375 (393)
T PRK11195        299 LLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENL-AMLLMLGLYSLL-VKLG-VPVVAVIVGFGLLVALAM  375 (393)
T ss_pred             HHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHH-HHHHHHHHHHHH-HHcC-CCHHHHHHHHHHHHHHHH
Confidence            5556777777666777777766654444 79999999866666 888888888855 4545 556677666666666666


Q ss_pred             HHHHHhh
Q 012500          423 WFVGIFL  429 (462)
Q Consensus       423 ~~~~~~~  429 (462)
                      .+.+++.
T Consensus       376 ~~~~~~~  382 (393)
T PRK11195        376 ALLWRWH  382 (393)
T ss_pred             HHHHHHH
Confidence            5555543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=4.1e-32  Score=262.20  Aligned_cols=374  Identities=13%  Similarity=0.100  Sum_probs=236.5

Q ss_pred             cccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhcc---chhHHHHHHHHHhhccccccccc
Q 012500           30 KLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSS---FDFWSIAICRMLVGVGEASFISL  105 (462)
Q Consensus        30 ~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~  105 (462)
                      ..+  .++..+.+.++..+++++.|++ ||+|||+++..+.+++.++.+++.+.   .+++.++++|+++|++.+...+.
T Consensus        70 ~~~--~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~  147 (481)
T TIGR00879        70 SSL--WGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASAL  147 (481)
T ss_pred             hhH--HHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhH
Confidence            555  4559999999999999999999 99999999999999999999998554   45668999999999999999999


Q ss_pred             ccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHH---HHhhcccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCc
Q 012500          106 AAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYG---GVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPA  182 (462)
Q Consensus       106 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~---~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~  182 (462)
                      ...++.|++|+++|++++++.+.+..+|..+++.++   ....+..+||+.|++.++..++. ++..++.||+++....+
T Consensus       148 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~l~~~~~~~~~~  226 (481)
T TIGR00879       148 VPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLL-FLGLFFLPESPRWLVGK  226 (481)
T ss_pred             HHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHH-HHHHhcCCCChHHHHHc
Confidence            999999999999999999999999999999999999   77667789999999966655444 34445557765322111


Q ss_pred             cccccccccccccccccccccccccccccchhhh-hhhhccccccchhhhhcchhhHHHHhh---hhHHHHHHHHHHHHH
Q 012500          183 ESGKAQVVASVSEGSEASNLNDHVSEDISDQASE-RSIKSIGESRFLNQLSQFSQDTKVLLQ---EKVYVVNVLGYIAYN  258 (462)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  258 (462)
                      ++.+..  ++...+..+.++   ......+.... ...+....    +..+..+....+.++   .+.++...+..+...
T Consensus       227 ~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (481)
T TIGR00879       227 GRVEEA--RKSLARLRGTSG---EDKELLDELELIDIKRSIEK----RSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQF  297 (481)
T ss_pred             CChHHH--HHHHHHHhCCCC---CcHHHHHHHHHHHHHHHHHH----hhccccHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence            111110  000000000000   00000000000 00000000    000000112222222   333333333333333


Q ss_pred             HHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHH---
Q 012500          259 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC---  334 (462)
Q Consensus       259 ~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  334 (462)
                      ........+.|.+.++ .+.+.... .......++.+++.++.+++.||++||     +.+..+..+.....+....   
T Consensus       298 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  371 (481)
T TIGR00879       298 TGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRR-----PLLLIGAAGMAICLFVLGILGA  371 (481)
T ss_pred             hCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHHHHHHHHHHHHHhh
Confidence            3344556677777655 56665433 444667788899999999999999998     6665554444443333321   


Q ss_pred             h-hh------hHHHHHHHHHHHHHHHhcccc-ceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchh
Q 012500          335 L-SS------LYGFLALFTVGELLVFATQAP-VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWR  406 (462)
Q Consensus       335 ~-~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~  406 (462)
                      . .+      ....+....+...+.+....+ ......+..|++.|+++.++.+...+. |.+++|.+.+.+.++.+ +.
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l-g~~i~~~~~~~~~~~~~-~~  449 (481)
T TIGR00879       372 SFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWL-ANFIVGFLFPTMLESIG-VG  449 (481)
T ss_pred             cccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC-cc
Confidence            1 11      222333333444444433433 344557778889999999999766665 89999999999998766 65


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 012500          407 KTTLALTSIFFLAAGIW  423 (462)
Q Consensus       407 ~~~~~~~~~~~~~~~~~  423 (462)
                      ..++..+++.+++.++.
T Consensus       450 ~~f~~~~~~~~~~~i~~  466 (481)
T TIGR00879       450 GVFIFFGGLNVLGLIFV  466 (481)
T ss_pred             ceehhHHHHHHHHHHHH
Confidence            66666665544444433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK03893 putative sialic acid transporter; Provisional

Probab=100.00  E-value=2.1e-31  Score=257.74  Aligned_cols=372  Identities=11%  Similarity=0.092  Sum_probs=233.4

Q ss_pred             HhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 012500           15 ILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRM   93 (462)
Q Consensus        15 ~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~   93 (462)
                      .+|.+.++   ++.++.+.+.  ..+.+.++..+++++.|++ ||+|||+++..+.++.+++.+++++++|++.+++.|+
T Consensus        42 ~~~~i~~~---~~~s~~~~~~--~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  116 (496)
T PRK03893         42 VLTEVQGE---FGLTTVQAAS--LISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARL  116 (496)
T ss_pred             HHHHHHHH---hCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            35644433   7788877555  9999999999999999999 9999999999999999999999999999999999999


Q ss_pred             HhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccc
Q 012500           94 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  173 (462)
Q Consensus        94 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p  173 (462)
                      +.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.++++||+.|++..+..+ ..++.....|
T Consensus       117 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~-~~~~~~~~~p  195 (496)
T PRK03893        117 VIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPII-FALWLRKNLP  195 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-HHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999999999999999999987544332 2222222234


Q ss_pred             cccCCCCCccccccccccccccccccccccccccccc-cchhhhhhhhccccc--cchhhhhcch-hhH-----------
Q 012500          174 LQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDI-SDQASERSIKSIGES--RFLNQLSQFS-QDT-----------  238 (462)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~-----------  238 (462)
                      |.++..+++++++ .              ..+..+.. ..+............  .......... ..+           
T Consensus       196 ~~~~~~~~~~~~~-~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (496)
T PRK03893        196 EAEDWKEKHAGKA-P--------------VRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAA  260 (496)
T ss_pred             Cchhhhhhccccc-c--------------chhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHH
Confidence            4321110000000 0              00000000 000000000000000  0000000000 000           


Q ss_pred             ------HHH--hhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhcc
Q 012500          239 ------KVL--LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGA  309 (462)
Q Consensus       239 ------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~  309 (462)
                            .+.  .+.+.........+...........++|.|+++..|.+..+. .+.+...++.+++.++.|++.||+++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~  340 (496)
T PRK03893        261 IFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGT  340 (496)
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                  000  000111111111111111122355788999987788886555 44577788889999999999999998


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhc
Q 012500          310 TISNAFKLLSAATFLGAISCLTAFCLS--SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFG  387 (462)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  387 (462)
                      |     +.+..+..+.....+......  +.+.......+.+.......+..+..+.+.+|++.|++++|+.+...+. |
T Consensus       341 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g  414 (496)
T PRK03893        341 R-----KAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGAL-G  414 (496)
T ss_pred             h-----HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhH-H
Confidence            8     665555444433332222222  2222222222222222233445556777888889999999998766655 8


Q ss_pred             cccchhHHHHHHhhhcchhHHHHHHHH
Q 012500          388 DVPSSPLVGVLQDHVNNWRKTTLALTS  414 (462)
Q Consensus       388 ~~~~~~~~g~l~~~~g~~~~~~~~~~~  414 (462)
                      ..++|.+.|.+.|..| +...+.....
T Consensus       415 ~~lgp~l~g~l~~~~g-~~~~~~~~~~  440 (496)
T PRK03893        415 GALAPILGALIAQRLD-LGTALASLSF  440 (496)
T ss_pred             HHHHHHHHHHHhccCC-hHHHHHHHHH
Confidence            8999999999999876 5555544443

>PRK12382 putative transporter; Provisional

Probab=100.00  E-value=7.8e-31  Score=245.79  Aligned_cols=331  Identities=15%  Similarity=0.072  Sum_probs=232.9

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhh---hc-----cchhHHHHHHHHHhh
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGC---GS-----SFDFWSIAICRMLVG   96 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~---~~-----~~~~~~l~~~r~l~G   96 (462)
                      ++.|..+.+.  ..+.+.++..+++++.|++ ||+||||++..+.+...++.+..   ++     .+|++.+++.|+++|
T Consensus        46 lg~s~~~~g~--~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G  123 (392)
T PRK12382         46 LGFGNTMVGI--AVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILG  123 (392)
T ss_pred             cCCcHHHHHH--HHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHH
Confidence            7888888666  9999999999999999999 99999999999988877665432   22     358899999999999


Q ss_pred             cccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhcccccc
Q 012500           97 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  176 (462)
Q Consensus        97 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~  176 (462)
                      ++.+...+...+++.|++|+|+|++++++.+.+...|..+||++++.+.+.+|||+.+.+..+..++..    ...++.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~----~~~~~~~  199 (392)
T PRK12382        124 FGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAW----AFNGTVR  199 (392)
T ss_pred             HHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH----HHHHhcc
Confidence            999988888889999999999999999999999999999999999999999999988776654332221    1112111


Q ss_pred             CCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHH
Q 012500          177 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA  256 (462)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (462)
                      +.  ++++++ .                                        .+.   .+..+.+.+ +.     +...+
T Consensus       200 ~~--~~~~~~-~----------------------------------------~~~---~~~~~~~~~-~~-----~~~~l  227 (392)
T PRK12382        200 KV--PAHAGE-R----------------------------------------PSL---WSVVGLIWK-PG-----LGLAL  227 (392)
T ss_pred             CC--CCCccc-C----------------------------------------chH---HHHHHHHHH-hH-----HHHHH
Confidence            00  000000 0                                        000   001111111 11     11222


Q ss_pred             HHHHHHHHHHHhhHHHHHHhCCCcchhhhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhh
Q 012500          257 YNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS  336 (462)
Q Consensus       257 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (462)
                      ..........+.|.|+++. +.++.. .......++.+++.+..|++.||+++|     +.+..+..+...........+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~g~~-----~~~~~~~~~~~~~~~~~~~~~  300 (392)
T PRK12382        228 QGVGFAVIGTFVSLYFASK-GWAMAG-FTLTAFGGAFVLMRVLFGWMPDRFGGV-----KVAIVSLLVETVGLLLLWLAP  300 (392)
T ss_pred             HHHHHhHHHHHHHHHHHhc-CCchhH-HHHHHHHHHHHHHHHHHHHHHHhcCCC-----eehHHHHHHHHHHHHHHHHcc
Confidence            3344445567777777663 444322 223445666788899999999999988     555555554444444444445


Q ss_pred             hhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHH
Q 012500          337 SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIF  416 (462)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  416 (462)
                      +.+..+....+.+++.+...+.......+..|+++|+++.|+.+...+. |..++|.+.|++.|+.| |+..+...+.+.
T Consensus       301 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~  378 (392)
T PRK12382        301 TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDI-AYGVSGPLAGMLATSFG-YPSVFLAGAISA  378 (392)
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhC-chHHHHHHHHHH
Confidence            5555555666667776666666667778888999999999999766665 88999999999999876 777777777666


Q ss_pred             HHHHHHH
Q 012500          417 FLAAGIW  423 (462)
Q Consensus       417 ~~~~~~~  423 (462)
                      +++..+.
T Consensus       379 ~~~~~~~  385 (392)
T PRK12382        379 VLGIIVT  385 (392)
T ss_pred             HHHHHHH
Confidence            5555443

>PRK10133 L-fucose transporter; Provisional

Probab=100.00  E-value=9e-31  Score=246.68  Aligned_cols=342  Identities=14%  Similarity=0.148  Sum_probs=246.3

Q ss_pred             HHHhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhh---hccchhHHH
Q 012500           13 GLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGC---GSSFDFWSI   88 (462)
Q Consensus        13 ~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l   88 (462)
                      +..+|.+ ++  +++.++.+.+.  ..+.+.+++.+++++.|++ ||+|||+++..+.++++++.+++   .+++|++.+
T Consensus        46 ~~~~p~i-~~--~~~~s~~~~gl--~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~l  120 (438)
T PRK10133         46 DILLPQF-QQ--AFTLTNFQAGL--IQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLF  120 (438)
T ss_pred             HHHHHHH-HH--HhCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            3336755 33  27888888666  9999999999999999999 99999999999999999999885   568999999


Q ss_pred             HHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhc------------------c---
Q 012500           89 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS------------------H---  147 (462)
Q Consensus        89 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~------------------~---  147 (462)
                      +++|+++|+|.|...+....++.|+.|+++|++.+++.+....+|..+++.+++.+..                  .   
T Consensus       121 l~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w  200 (438)
T PRK10133        121 LVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAY  200 (438)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHH
Confidence            9999999999999999999999998877777778999999999999999998875430                  0   


Q ss_pred             -----cchHHHHHHHHH-HHHHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhc
Q 012500          148 -----LNWRYAFWGEAI-LMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS  221 (462)
Q Consensus       148 -----~gwr~~f~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (462)
                           .+||++|+.... ..++..+..+...||.+.     ++++..                                 
T Consensus       201 ~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~-----~~~~~~---------------------------------  242 (438)
T PRK10133        201 KHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS-----DNHSDA---------------------------------  242 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cccccc---------------------------------
Confidence                 256667764333 322222222222233110     000000                                 


Q ss_pred             cccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHhCCCcchh-hhhhhHHHhhhhhhhh
Q 012500          222 IGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAG-YNIYHMSNADM-MFGGVTIVCGIVGTIS  299 (462)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~  299 (462)
                              +.++..++.++++++|.++...+..++......+...|.+.|+ ++..|.++... .......++.++++++
T Consensus       243 --------~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~  314 (438)
T PRK10133        243 --------KQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFT  314 (438)
T ss_pred             --------cccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                    0000112356778899888777767777777777778888885 56678887666 4447778888999999


Q ss_pred             hhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHH
Q 012500          300 GGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS  379 (462)
Q Consensus       300 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (462)
                      ++++.||+++|     +.+.....+....++.....++. ..+..+.+.+++.+..+|...+...+..++ +.+++.++.
T Consensus       315 ~g~l~~r~g~~-----~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~  387 (438)
T PRK10133        315 GTWLISRFAPH-----KVLAAYALIAMALCLISAFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFI  387 (438)
T ss_pred             HHHHHHHcCHH-----HHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHH
Confidence            99999999998     66665555554444443333332 335566778889999999999888888755 467778877


Q ss_pred             HHHHhhhccccchhHHHHHHhhhcchhHHHHHHHH
Q 012500          380 TVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTS  414 (462)
Q Consensus       380 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~  414 (462)
                      . ... .|+.++|.+.|.+.|..|+.+..+++...
T Consensus       388 ~-~~~-~g~~~~~~i~G~l~~~~g~~~~~~~v~~~  420 (438)
T PRK10133        388 V-MTI-IGGGIVTPVMGFVSDAAGNIPTAELIPAL  420 (438)
T ss_pred             h-HHh-ccchHHHHHHHHHHHhccchHHHHHHHHH
Confidence            4 333 47888999999999987644455554333

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=100.00  E-value=9.9e-31  Score=244.11  Aligned_cols=325  Identities=15%  Similarity=0.141  Sum_probs=236.0

Q ss_pred             HhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 012500           15 ILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRM   93 (462)
Q Consensus        15 ~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~   93 (462)
                      .+|.+.++   ++.++.+.+.  ..+.+.++..+++++.|++ ||+|||+++..+.++.+++.+.+.++++++.+++.|+
T Consensus        13 ~~~~~~~~---~~~s~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   87 (377)
T PRK11102         13 ALPVIAAD---FGVSAGSVQM--TLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRF   87 (377)
T ss_pred             cHHHHHHH---hCCCHHHHHH--HHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            35544443   7888888665  9999999999999999999 9999999999999999999999999999999999999


Q ss_pred             HhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccc
Q 012500           94 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  173 (462)
Q Consensus        94 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p  173 (462)
                      ++|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+||+.|++.+++.++..+...+..|
T Consensus        88 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (377)
T PRK11102         88 LHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIP  167 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999899999999998887777666666666


Q ss_pred             cccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHH
Q 012500          174 LQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLG  253 (462)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (462)
                      |++++.    ++++.                    +                     .++..++.++.++++..+...+.
T Consensus       168 ~~~~~~----~~~~~--------------------~---------------------~~~~~~~~~~~~~~~~~~~~~~~  202 (377)
T PRK11102        168 ETLPKE----RRQPF--------------------H---------------------LRTTIRNFASLFRHKRVLGYMLA  202 (377)
T ss_pred             ccCccc----ccCCC--------------------C---------------------hHHHHHHHHHHHcChHHHHHHHH
Confidence            532210    00000                    0                     00001245567788887777666


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHH---
Q 012500          254 YIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC---  329 (462)
Q Consensus       254 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~---  329 (462)
                      ..+.......+..+.|.++.+.++.++... .......++.+++.++.+++.||+++|     +.+..+..+.....   
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~-----~~~~~~~~~~~~~~~~~  277 (377)
T PRK11102        203 SGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGAL-----NMLRFGLWIQFIMGIWL  277 (377)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-----HHHHHHHHHHHHHHHHH
Confidence            666666666777788888888888886555 444667788889999999999999988     65554443322211   


Q ss_pred             HHHHHh-hhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHH
Q 012500          330 LTAFCL-SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV  395 (462)
Q Consensus       330 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  395 (462)
                      ...... .+.+.......+...+.+...........+.. |+.++++.++.+.....+|..+++.+.
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~g~~~g~~~~  343 (377)
T PRK11102        278 VVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEF-PHMAGTASSLAGTLRFGIGAIVGALLS  343 (377)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhccc-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111 12333333333333333333333344444544 578999999987655555666666443

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=1.6e-31  Score=251.58  Aligned_cols=356  Identities=14%  Similarity=0.142  Sum_probs=247.2

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML   94 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l   94 (462)
                      .|.+.++   ++.++.+.+.  +.+.+.++..++.++.|++ ||+|||+++..+.++.+++.++..++++++.+++.|++
T Consensus        40 ~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (398)
T TIGR00895        40 APAISAE---WGLDPVQLGF--LFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFL  114 (398)
T ss_pred             HHHHhhc---cCCCHHHHHH--HHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence            5544443   6777777555  9999999999999999999 99999999999999999999999999999999999999


Q ss_pred             hhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhcccc
Q 012500           95 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  174 (462)
Q Consensus        95 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  174 (462)
                      .|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+..|||+.|++.+++.++..++.+...||
T Consensus       115 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  194 (398)
T TIGR00895       115 AGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPE  194 (398)
T ss_pred             HhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999877776666666666676


Q ss_pred             ccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHH
Q 012500          175 QLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGY  254 (462)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (462)
                      +++...++++++..   +..++.......+ ..+...++..    +.       +..++..+..++..+.+..+...+..
T Consensus       195 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (398)
T TIGR00895       195 SIDFLVSKRPETVR---RIVNAIAPQMQAE-AQSALPEQKA----TQ-------GTKRSVFKALFQGKTARITVLLWLLY  259 (398)
T ss_pred             CChHHHhcCHHHHH---HHHHHHHHhcccc-cccccccccc----cc-------chhhHHHHHHhcchhHHHHHHHHHHH
Confidence            54322111100000   0000000000000 0000000000    00       00011111111111223333344444


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHH
Q 012500          255 IAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF  333 (462)
Q Consensus       255 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (462)
                      ++..........+.| ++.+..+.++... .......++.+++.++.+++.||+++|     +..............+..
T Consensus       260 ~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~  333 (398)
T TIGR00895       260 FMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR-----VTALLLLLGAVFAVLVGS  333 (398)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH-----HHHHHHHHHHHHHHHHHH
Confidence            455556667778888 4445567775444 445677888899999999999999986     444433333333333332


Q ss_pred             HhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHH
Q 012500          334 CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  398 (462)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l  398 (462)
                      ..++.+..+...++.+++.+...+.......+.+|++.|+++.|+.+...+. |..++|.+.|++
T Consensus       334 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~g~~~~G~l  397 (398)
T TIGR00895       334 TLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRL-GAIIGPILAGYL  397 (398)
T ss_pred             HhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH-HHHHHHHhHHhc
Confidence            2345555666777778888888888888999999999999999999766555 889999888875

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.98  E-value=1.5e-30  Score=242.46  Aligned_cols=336  Identities=16%  Similarity=0.157  Sum_probs=234.0

Q ss_pred             HHhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHH
Q 012500           14 LILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICR   92 (462)
Q Consensus        14 ~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r   92 (462)
                      ..+|.+.++   ++.++.+.++  ..+.+.++..+++++.|++ ||+|||+++..+.++.+++.+++++++|++.++++|
T Consensus        27 ~~lp~~~~~---~~~s~~~~G~--~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  101 (381)
T PRK03633         27 TLVPLWLAQ---EHLPTWQVGV--VSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWR  101 (381)
T ss_pred             HHHHHHHHH---cCCCHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            346655554   6788888555  9999999999999999999 999999999999999999999999999999999999


Q ss_pred             HHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhcc
Q 012500           93 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  172 (462)
Q Consensus        93 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  172 (462)
                      +++|++.+...+.....+.+..++++|++++++++.+.++|..+||.+++.+.+...|+..+. .+..........+...
T Consensus       102 ~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~  180 (381)
T PRK03633        102 FVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWV-TGLVLAAILPLLFTRI  180 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHH-HHHHHHHHHHHHHhcc
Confidence            999999998888888888889999999999999999999999999999999877543333332 2222111111111111


Q ss_pred             ccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHH
Q 012500          173 PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL  252 (462)
Q Consensus       173 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (462)
                      +++  .   +++ ++                                               ..+.++.+++|.++....
T Consensus       181 ~~~--~---~~~-~~-----------------------------------------------~~~~~~~~~~~~~~~~~~  207 (381)
T PRK03633        181 LNQ--Q---AEN-HD-----------------------------------------------STSIWPMLKLRQARLGVN  207 (381)
T ss_pred             cCC--C---CCC-CC-----------------------------------------------CCCHHHHHHhcchHHHHH
Confidence            110  0   000 00                                               002334567777665544


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHH
Q 012500          253 GYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT  331 (462)
Q Consensus       253 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (462)
                      ..+...........++|.|+++ .+.++... .+.....++.+++++..|++.||+++|     +.+..+..+.......
T Consensus       208 ~~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~-----~~l~~~~~~~~~~~~~  281 (381)
T PRK03633        208 GCIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRL-----LVLRVQVFVVILGSIA  281 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcH-----HHHHHHHHHHHHHHHH
Confidence            4444444555666788998877 46665444 344666788899999999999999998     6665554444443332


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHH
Q 012500          332 AFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA  411 (462)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  411 (462)
                      ..  .. ........+.+.+.....+.......+..|+++++...+..+...+. |.+++|.+.|++.|+.| +...+..
T Consensus       282 ~~--~~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l-G~~igp~~~G~l~~~~g-~~~~f~~  356 (381)
T PRK03633        282 ML--SQ-AAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTV-GSLLGPSFTAMLMQNYS-DNLLFIM  356 (381)
T ss_pred             Hh--hh-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhC-ccHHHHH
Confidence            22  11 12222333444444455666667777888887777777777655555 99999999999999877 6566666


Q ss_pred             HHHHHHHH
Q 012500          412 LTSIFFLA  419 (462)
Q Consensus       412 ~~~~~~~~  419 (462)
                      .+.+.++.
T Consensus       357 ~~~~~l~~  364 (381)
T PRK03633        357 IASVSFIY  364 (381)
T ss_pred             HHHHHHHH
Confidence            55554433

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.98  E-value=7.5e-30  Score=238.32  Aligned_cols=331  Identities=14%  Similarity=0.112  Sum_probs=247.9

Q ss_pred             ccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhc---cchhHHHHHHHHHhhcccc
Q 012500           25 FLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGS---SFDFWSIAICRMLVGVGEA  100 (462)
Q Consensus        25 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~g  100 (462)
                      +++.++.+.+.  +.+.+.+++.+++++.|++ ||+|||+++..+.++++++.+++..   .+|++.+++.|++.|+|.|
T Consensus        32 ~~~~s~~~~g~--l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g  109 (410)
T TIGR00885        32 AFTLTAFQAAL--VQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLG  109 (410)
T ss_pred             HhCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHH
Confidence            37888888655  9999999999999999999 9999999999999999999988644   4689999999999999999


Q ss_pred             cccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhc--------------------------ccchHHHH
Q 012500          101 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS--------------------------HLNWRYAF  154 (462)
Q Consensus       101 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~--------------------------~~gwr~~f  154 (462)
                      ...+....++.+..|+++|++.+++.+...++|..++|.+++.+..                          ..+||++|
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~f  189 (410)
T TIGR00885       110 FLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPY  189 (410)
T ss_pred             HHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999887742                          23699999


Q ss_pred             HHHHHHHHHHHHHHhhc-cccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhc
Q 012500          155 WGEAILMLPFAVLAFVI-KPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQ  233 (462)
Q Consensus       155 ~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (462)
                      ++.+++.++..++..+. .|+.++    +++++ .                                            +
T Consensus       190 l~~a~~~~~~~~~~~~~~~p~~~~----~~~~~-~--------------------------------------------~  220 (410)
T TIGR00885       190 MIIGAVVLAVALLIMLTKMPALNH----SDAKQ-I--------------------------------------------S  220 (410)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCc----ccccc-c--------------------------------------------c
Confidence            99988776655444322 122100    00000 0                                            0


Q ss_pred             chhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh-CCCcch-hhhhhhHHHhhhhhhhhhhHHHhhhcccc
Q 012500          234 FSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIY-HMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATI  311 (462)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~  311 (462)
                      ..++.++++|+|.++...+..+++........++++.|.++.. +.+... ..+......+..+|+++++++.||+++| 
T Consensus       221 ~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~-  299 (410)
T TIGR00885       221 FSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH-  299 (410)
T ss_pred             chhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH-
Confidence            0012446778888888777777777777777788999987643 222211 2334555677789999999999999988 


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccc
Q 012500          312 SNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPS  391 (462)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  391 (462)
                          +.+........+..++....++.. ....+.+.+++.+..+|..+....+..+++.+..+.++. +..  .|+++.
T Consensus       300 ----~~l~i~~~~~~~~~ll~~~~~~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~-~~~--~Gga~~  371 (410)
T TIGR00885       300 ----KVLMAYAIIGMALCLGSIFAGGHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLV-MAI--IGGGIV  371 (410)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH-HHH--hccchH
Confidence                777666666666666665544433 356666777888888899999999999877655455554 332  599999


Q ss_pred             hhHHHHHHhhh-----cchhHHHHHHHHH
Q 012500          392 SPLVGVLQDHV-----NNWRKTTLALTSI  415 (462)
Q Consensus       392 ~~~~g~l~~~~-----g~~~~~~~~~~~~  415 (462)
                      |++.|.+.|..     |+++..|++...+
T Consensus       372 p~l~G~~~d~~~~~~~~~~~~~~~~~~~~  400 (410)
T TIGR00885       372 PPLQGFIIDMKEIAAAPAVNTSFILPLLC  400 (410)
T ss_pred             HHHHHHHHHHhcccccCccchHHHHHHHH
Confidence            99999999964     3465666654433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.98  E-value=1.2e-30  Score=245.55  Aligned_cols=400  Identities=13%  Similarity=0.075  Sum_probs=292.8

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHH-HHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAI-CRM   93 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~r~   93 (462)
                      .+.+.++   ++.+..+  .+|+.+...-...+.+|+.+.+ ||+|.|.+.+.|.++.+++.++.+|++++|++++ .-+
T Consensus        69 ~~~~~~~---f~~s~~~--~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gv  143 (509)
T KOG2504|consen   69 FEELMDY---FGSSSSQ--IAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGV  143 (509)
T ss_pred             HHHHHHH---hCCCccH--HHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            4544444   6777777  5669999999999999999999 9999999999999999999999999999999877 568


Q ss_pred             HhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccc
Q 012500           94 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  173 (462)
Q Consensus        94 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p  173 (462)
                      +.|+|.|..+.....++..||+ |+|+.+.|+...+.++|..+-|.+...+.+.+|||+.+++.+.+.+-..+....+.|
T Consensus       144 i~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  144 IGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             HhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8999999999999999998887 899999999999999999999999999999999999999999998888887777777


Q ss_pred             cccCCCCCccccccccccccccc-----cccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHH
Q 012500          174 LQLKGFAPAESGKAQVVASVSEG-----SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYV  248 (462)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (462)
                      ..++..++.+++......+....     .....++....+ .........++.+.+.......+....--.++++++.++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl  301 (509)
T KOG2504|consen  223 LSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKK-LSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFL  301 (509)
T ss_pred             CCcCCCchhhhhhccccccccccccccccccccCCCCCCc-ccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHH
Confidence            55443222000000000000000     000000000000 000000000000000000000000000013688999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCc-chhhhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHH
Q 012500          249 VNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN-ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI  327 (462)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  327 (462)
                      ...+...+....+.....++|.|..+ .+.+. ......++.++..++++++.|++.|+...+..   .....+.+...+
T Consensus       302 ~~~~~~~~~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~---~~~~~~ll~~gl  377 (509)
T KOG2504|consen  302 LLALSNLFAYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRAL---VLFLLTLLIAGL  377 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchH---HHHHHHHHHHHH
Confidence            99999999999999999999999996 45554 44466688899999999999999999884421   344455555555


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhH
Q 012500          328 SCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRK  407 (462)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  407 (462)
                      ..+.....++.+..+....++|++.+.........+.+.++.+.-+.+.|+.....+. +..+||++.|++.|.+|+|..
T Consensus       378 ~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi-~~l~gpPiag~~~d~tg~Y~~  456 (509)
T KOG2504|consen  378 ARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGI-GALVGPPIAGLLYDITGNYDH  456 (509)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHH-HHHcCcccceeeeeccCCeee
Confidence            5566666677778888888888888877766667888889999999999999555555 999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 012500          408 TTLALTSIFFLAAGIWFVGI  427 (462)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~  427 (462)
                      .+++.+.+.+.+..+++...
T Consensus       457 ~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  457 AFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             ehhhcChHHHHHHHHHHHhH
Confidence            99999999888887777665

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.97  E-value=2e-29  Score=235.76  Aligned_cols=344  Identities=10%  Similarity=0.055  Sum_probs=223.4

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhH-HHHHHHHHHHHHhhhccchhHHHHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLI-GVGLSVWTFATAGCGSSFDFWSIAICRM   93 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l-~~~~~~~~~~~~~~~~~~~~~~l~~~r~   93 (462)
                      +|.++.++  ++.++++.+.  ..+...+...+.+++.+.. ||+||||.+ ..+.++.+++..+.+++++++.+++.+.
T Consensus        38 ~~~~l~~~--~~~s~~~~g~--~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  113 (393)
T PRK15011         38 LSIFLTDE--VHARPAMVGF--FFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGV  113 (393)
T ss_pred             HHHHHHhh--cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            45444443  6778888655  7776666556666677777 999999875 5666777788888889999998876665


Q ss_pred             HhhcccccccccccchhcccCCCCCc--hhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhc
Q 012500           94 LVGVGEASFISLAAPFIDDNAPVPQK--TAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  171 (462)
Q Consensus        94 l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  171 (462)
                      +.|...+...|....++.|+.++++|  +...++.+.+.++|.++||++++.+.+++|||..|++.++.+++..+..++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~  193 (393)
T PRK15011        114 FLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLF  193 (393)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhh
Confidence            55544556788888888888876655  3456888999999999999999999999999999999998887777777776


Q ss_pred             cccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHH
Q 012500          172 KPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNV  251 (462)
Q Consensus       172 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (462)
                      .||.++..+  ++++..                   +                            ..++  +++..+...
T Consensus       194 ~~~~~~~~~--~~~~~~-------------------~----------------------------~~~~--~~~~~~~~~  222 (393)
T PRK15011        194 LPSMRKELP--LATGTL-------------------E----------------------------APRR--NRRDTLLLF  222 (393)
T ss_pred             cCccCCCCc--cccccc-------------------c----------------------------cccc--ccccHHHHH
Confidence            676432110  000000                   0                            0000  001112222


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHH
Q 012500          252 LGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  330 (462)
Q Consensus       252 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  330 (462)
                      ............+..+.|.|+++.++.++... .+.....+..+++.++.|+++||+++|     +.+............
T Consensus       223 ~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~-----~~~~~~~~~~~~~~~  297 (393)
T PRK15011        223 VICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKR-----FLMRVAAVAGVCFYA  297 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-----HHHHHHHHHHHHHHH
Confidence            22233333444556789999988888886554 333445566788899999999999998     555444333333322


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHH
Q 012500          331 TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTL  410 (462)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  410 (462)
                      .....++.+..+....+.++..+...+.......+..| ++++++.++.+...+. |..++|.+.|.+.|..| ++..+.
T Consensus       298 ~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~l-g~~~g~~l~G~i~~~~g-~~~~~~  374 (393)
T PRK15011        298 GMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRV-GWIIAGSLAGIVAEIWN-YHAVFW  374 (393)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHhh-hHHHHH
Confidence            22233444444444444444444333333344455555 5699999998766665 99999999999999875 666666


Q ss_pred             HHHHHHHHHHHH
Q 012500          411 ALTSIFFLAAGI  422 (462)
Q Consensus       411 ~~~~~~~~~~~~  422 (462)
                      ....+.+++...
T Consensus       375 ~~~~~~~~~~~~  386 (393)
T PRK15011        375 FALVMIIATLFC  386 (393)
T ss_pred             HHHHHHHHHHHH
Confidence            555554444333

>PRK11043 putative transporter; Provisional

Probab=99.97  E-value=9.3e-30  Score=239.24  Aligned_cols=325  Identities=18%  Similarity=0.095  Sum_probs=234.6

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML   94 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l   94 (462)
                      .|.+.....+++.++.+.+.  ..+.+.++..++++++|++ ||+|||+++..+.++..++.++++++++++.+++.|++
T Consensus        26 ~p~~~~i~~~~~~s~~~~g~--~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  103 (401)
T PRK11043         26 LPAFKAIQADLQTSASAVSA--SLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFV  103 (401)
T ss_pred             HhhHHHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            55443333347888888655  9999999999999999999 99999999999999999999999999999999999999


Q ss_pred             hhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhcccc
Q 012500           95 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  174 (462)
Q Consensus        95 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  174 (462)
                      +|++.+...+...+++.|++|++++++..+.......+|..++|.+++.+.+++|||+.|++.++..++..+..++. ++
T Consensus       104 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~  182 (401)
T PRK11043        104 QAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRL-KP  182 (401)
T ss_pred             HHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc-CC
Confidence            99998888888888999999999999999999999999999999999999999999999999988877766655444 32


Q ss_pred             ccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHH
Q 012500          175 QLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGY  254 (462)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (462)
                      ++++    +++++.                                              ..+++++++++.++...+..
T Consensus       183 ~~~~----~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~~~~  212 (401)
T PRK11043        183 SKKA----RKQSQD----------------------------------------------ALTFKQLLKSKTYLGNVLIF  212 (401)
T ss_pred             CCCc----cccchH----------------------------------------------HHHHHHHHcChhHHHHHHHH
Confidence            2110    000000                                              12356677888777665555


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhCCCcchhhh-hhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHH---HHHHHHHH
Q 012500          255 IAYNFVIGAYSYWGPKAGYNIYHMSNADMMF-GGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT---FLGAISCL  330 (462)
Q Consensus       255 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~---~~~~~~~~  330 (462)
                      .+.......+..+.|.++++ .|.++..... .....++.+++.+..+++.||+++|     +......   .+......
T Consensus       213 ~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~-----~~~~~~~~~~~~~~~~~~  286 (401)
T PRK11043        213 AACSAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGE-----QLLPWLLVLFAVSVIAIW  286 (401)
T ss_pred             HHHHHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH-----HHHHHHHHHHHHHHHHHH
Confidence            55555556667788988765 6777654433 3444567788888899999999877     4332221   22222111


Q ss_pred             HHHH--hhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhh
Q 012500          331 TAFC--LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  401 (462)
Q Consensus       331 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~  401 (462)
                      ....  .++.+.......+.+++.+..++.......+.. |++++++.|+.+..... +...++.+.|.+.|.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~-~~~~~~~~~g~l~~~  357 (401)
T PRK11043        287 LASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPF-PQATGKAAALQNTLQLG-LCFLASLLVSALIST  357 (401)
T ss_pred             HHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-cccChHHHHHHHHHHHH-HHHHHHHHHHHccCC
Confidence            1111  223333444455566666666666555555555 46799999999765554 667788888888774

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.97  E-value=1.3e-29  Score=234.42  Aligned_cols=324  Identities=21%  Similarity=0.280  Sum_probs=270.1

Q ss_pred             HhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 012500           15 ILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRM   93 (462)
Q Consensus        15 ~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~   93 (462)
                      ..|.+.++   .+.++.+.+.  ..+.+.++..++.++.|++ ||+|||+.+..+.++..++.+...++++++.+++.|+
T Consensus        21 ~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (352)
T cd06174          21 ALPLLAED---LGLSASQAGL--IVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRF   95 (352)
T ss_pred             hHHHHHHH---cCCCHHHHHH--HHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            35655544   5777777555  9999999999999999999 9999999999999999999999999999999999999


Q ss_pred             HhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccc
Q 012500           94 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  173 (462)
Q Consensus        94 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p  173 (462)
                      +.|++.+...+...+++.|++|+|+|++.+++.+....+|..++|.+++.+.+..+||+.+++.++..++..+...+. |
T Consensus        96 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  174 (352)
T cd06174          96 LLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFL-L  174 (352)
T ss_pred             HHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            999999999999999999999999999999999999999999999999999999899999999988776665544332 1


Q ss_pred             cccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHH
Q 012500          174 LQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLG  253 (462)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (462)
                                                                                             |.++...+.
T Consensus       175 -----------------------------------------------------------------------~~~~~~~~~  183 (352)
T cd06174         175 -----------------------------------------------------------------------RLLLLLALA  183 (352)
T ss_pred             -----------------------------------------------------------------------HHHHHHHHH
Confidence                                                                                   344555666


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchh-HHHHHHHHHHHHHHH
Q 012500          254 YIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFK-LLSAATFLGAISCLT  331 (462)
Q Consensus       254 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~-~~~~~~~~~~~~~~~  331 (462)
                      .++..........+.|.+.++..+.++... .......++..++.++.+++.||+++|     + .+..+..+.......
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~  258 (352)
T cd06174         184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRR-----RLLLLIGLLLAALGLLL  258 (352)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHH
Confidence            677777778888899999988777776555 445777888999999999999999998     6 666666666666666


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHH
Q 012500          332 AFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA  411 (462)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  411 (462)
                      ....++.+.......+.+++.+...+.......+..|+++|++..|+.+...+. +..++|.+.|.+.|..+ ++..+..
T Consensus       259 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~i~g~l~~~~~-~~~~~~~  336 (352)
T cd06174         259 LALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSL-GGALGPLLAGLLLDTGG-YGGVFLI  336 (352)
T ss_pred             HHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccC-cchHHHH
Confidence            666666677777888888888888888899999999999999999999766666 89999999999998655 6677777


Q ss_pred             HHHHHHHHHHH
Q 012500          412 LTSIFFLAAGI  422 (462)
Q Consensus       412 ~~~~~~~~~~~  422 (462)
                      .+.+.+++.+.
T Consensus       337 ~~~~~~i~~i~  347 (352)
T cd06174         337 LAALALLAALL  347 (352)
T ss_pred             HHHHHHHHHHH
Confidence            76665555443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.97  E-value=2.5e-29  Score=245.30  Aligned_cols=354  Identities=20%  Similarity=0.297  Sum_probs=255.7

Q ss_pred             ccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccc------------------
Q 012500           23 KKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSF------------------   83 (462)
Q Consensus        23 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~------------------   83 (462)
                      +.+++++..+.|+  +.+.+.+++++..++.+++ ||+|||+++.++.++++++++++++.+                  
T Consensus        60 ek~F~lss~~~G~--i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~  137 (633)
T TIGR00805        60 ERRFKLSTSSSGL--INGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNL  137 (633)
T ss_pred             hhhhCCCCCccee--eeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccc
Confidence            3447888888766  9999999999999999999 999999999999999999999988763                  


Q ss_pred             ---------------------------------hhHHHHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhh
Q 012500           84 ---------------------------------DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCI  130 (462)
Q Consensus        84 ---------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~  130 (462)
                                                       .+..++++|+++|+|.+..++...+++.|++|+++|++++++++.+.
T Consensus       138 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~  217 (633)
T TIGR00805       138 SSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIA  217 (633)
T ss_pred             cccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHH
Confidence                                             24567899999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhHHHHhhccc----------------------chHHHHHHHHHHHHHHHHHHhhccccccCCCCCccccccc
Q 012500          131 PTGVALGYVYGGVVGSHL----------------------NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQ  188 (462)
Q Consensus       131 ~~G~~~g~~~~~~l~~~~----------------------gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  188 (462)
                      .+|.++|+++++++.+.+                      +||..|++.+++.++..+..+ ..|++.+.....++.+..
T Consensus       218 ~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~-~~p~~lp~~~~~~~~~~~  296 (633)
T TIGR00805       218 VFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF-FFPKALPKEGKRVNVDVH  296 (633)
T ss_pred             HhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH-hCccccCCcccccchhhh
Confidence            999999999999887543                      278889998888777766544 445543221100000000


Q ss_pred             cccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012500          189 VVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWG  268 (462)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (462)
                       +++.   .+   +.    +  ++.   ..       ......++..+.+++++++|.++...+..++.....+++.+|+
T Consensus       297 -~~~~---~~---~~----~--~~~---~~-------~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~l  353 (633)
T TIGR00805       297 -ETEK---LE---KS----E--DKS---RK-------KNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFL  353 (633)
T ss_pred             -hhhc---cc---cc----c--ccc---ch-------hhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence             0000   00   00    0  000   00       0001122334567889999999999999999999999999999


Q ss_pred             hHHHHHHhCCCcchhhh-hhhHHH-hhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHH---------------
Q 012500          269 PKAGYNIYHMSNADMMF-GGVTIV-CGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT---------------  331 (462)
Q Consensus       269 p~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  331 (462)
                      |.|+++.++.++....+ .....+ +.+++.+++|+++||++.+.+...++.....++.......               
T Consensus       354 P~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~agv~  433 (633)
T TIGR00805       354 PKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLLCSPLFLIGCESAPVAGVN  433 (633)
T ss_pred             HHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHHHHHHHeecCCCCccceee
Confidence            99999999999766633 333343 5678999999999999865332112222222222111110               


Q ss_pred             ------------HHH--------h--------------------------------------------------------
Q 012500          332 ------------AFC--------L--------------------------------------------------------  335 (462)
Q Consensus       332 ------------~~~--------~--------------------------------------------------------  335 (462)
                                  ...        .                                                        
T Consensus       434 ~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~~CsCi~~~~~~~a~~g~C~~~  513 (633)
T TIGR00805       434 NPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYTNCSCVQTPGNSSAKKGLCNPP  513 (633)
T ss_pred             ccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcceecccccccCCCCCCCcCCCCCcc
Confidence                        000        0                                                        


Q ss_pred             -hh-hHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhh
Q 012500          336 -SS-LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  402 (462)
Q Consensus       336 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~  402 (462)
                       ++ ...+++..++..+..+....+...++.+.+|+++|+.+.|+.....+.+|.+.+|+++|++.|..
T Consensus       514 C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD~s  582 (633)
T TIGR00805       514 CATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLIDVS  582 (633)
T ss_pred             cchhHHHHHHHHHHHHHHHHhccCchheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhhch
Confidence             00 12233444444555567778888999999999999999999999999999999999999999975

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.97  E-value=1.5e-29  Score=235.67  Aligned_cols=339  Identities=10%  Similarity=-0.017  Sum_probs=252.8

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhH----HHHHHHHHHHHHhhhccchhHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLI----GVGLSVWTFATAGCGSSFDFWSIAI   90 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l----~~~~~~~~~~~~~~~~~~~~~~l~~   90 (462)
                      +|.+.++   ++.|..+.+.  ..+.+.+...+++++.+.+ ||+|||+..    ..+..+..+  ..+..+++++.+++
T Consensus        27 l~~~l~~---~g~s~~~ig~--~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~   99 (382)
T TIGR00902        27 FPAWLKG---IGLGEEMIGL--LIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFI   99 (382)
T ss_pred             HHHHHHH---cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHH
Confidence            4455544   7888888666  9999999999999999999 999985433    222222222  24456789999999


Q ss_pred             HHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhh
Q 012500           91 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  170 (462)
Q Consensus        91 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  170 (462)
                      .|+++|.+.+...|...++..++  +++|+++.+......++|.+++|++++.+.+++|||..|++.++.. ...+..+.
T Consensus       100 ~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~-~~~~~~~~  176 (382)
T TIGR00902       100 AIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGL-AFMLIGFL  176 (382)
T ss_pred             HHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH-HHHHHHHH
Confidence            99999999888889888887665  4789999999999999999999999999999999999998876553 22222333


Q ss_pred             ccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHH
Q 012500          171 IKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN  250 (462)
Q Consensus       171 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (462)
                      ..|+.+++. + ++++..                                            ...++.++++|+|+++..
T Consensus       177 ~~~~~~~~~-~-~~~~~~--------------------------------------------~~~~~~~~~l~~~~~~~~  210 (382)
T TIGR00902       177 IKPTIPPKD-A-IPEDES--------------------------------------------QGDSAFIALLKNPMNLRF  210 (382)
T ss_pred             cCCCCCCCc-c-cccccc--------------------------------------------ccchhHHHHHcChHHHHH
Confidence            322211110 0 000000                                            001235678899999998


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHH
Q 012500          251 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC  329 (462)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  329 (462)
                      .+..++.......+..+.|.|+++ .|.++... .......++.+++.++.+++.||++.|     +.+..+........
T Consensus       211 l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~-----~~l~~~~~~~~~~~  284 (382)
T TIGR00902       211 LAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSAR-----DLLLISAIACVGRW  284 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHH-----HHHHHHHHHHHHHH
Confidence            888888888888888899999977 67776555 333556777788888899999999988     77777777777776


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHH
Q 012500          330 LTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTT  409 (462)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~  409 (462)
                      ......++.+..+....+.++..+...+....++.+. |+++++++.++++.....+|.+++|.+.|++.|+.| + ..+
T Consensus       285 ~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~  361 (382)
T TIGR00902       285 AIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTF  361 (382)
T ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHH
Confidence            6666677878888888899999998888888888877 888899999998655555599999999999999986 4 445


Q ss_pred             HHHHHHHHHH
Q 012500          410 LALTSIFFLA  419 (462)
Q Consensus       410 ~~~~~~~~~~  419 (462)
                      ...+.+.+.+
T Consensus       362 ~~~~~~~~~~  371 (382)
T TIGR00902       362 VFMAIIAAAA  371 (382)
T ss_pred             HHHHHHHHHH
Confidence            5555554433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10054 putative transporter; Provisional

Probab=99.97  E-value=1e-29  Score=237.27  Aligned_cols=335  Identities=15%  Similarity=0.080  Sum_probs=241.0

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML   94 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l   94 (462)
                      +|.+++++  ++.++.+.+.  ..+.+.++..+.+++.|++ ||+|||+++..+.++.+++.++.++++|++.+++.|++
T Consensus        30 l~~~l~~~--~g~s~~~~g~--~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (395)
T PRK10054         30 MTIYLSRQ--YSLSVDLIGY--AMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFAL  105 (395)
T ss_pred             HHHHHHHH--cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            44455443  6788888655  9999999999999999999 99999999999999999999999999999999999999


Q ss_pred             hhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhcccc
Q 012500           95 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  174 (462)
Q Consensus        95 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  174 (462)
                      .|.+.+...+...++..|.+|+++|++++++.....++|.+++|.+++.+.+ .+||.+|++.++..++..++..+..|+
T Consensus       106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~  184 (395)
T PRK10054        106 INCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQR  184 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhc
Confidence            9988887888889999999999999999999999999999999999998875 699999999888776665555555554


Q ss_pred             ccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHH
Q 012500          175 QLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGY  254 (462)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (462)
                      +++..   ++++ .                                        +     ..+.++.+++|.++...+..
T Consensus       185 ~~~~~---~~~~-~----------------------------------------~-----~~~~~~~~~~~~~~~~~~~~  215 (395)
T PRK10054        185 SEKAI---ATET-G----------------------------------------S-----VWSPSVLLQDKALLWFTCSG  215 (395)
T ss_pred             ccccc---ccch-h----------------------------------------h-----hhhhhhhccCceehHHHHHH
Confidence            32110   0000 0                                        0     00124567888888777766


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhCCC--cchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHH
Q 012500          255 IAYNFVIGAYSYWGPKAGYNIYHMS--NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT  331 (462)
Q Consensus       255 ~~~~~~~~~~~~~~p~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (462)
                      ++.......+..+.+.|.....+.+  .... .......+.........|++.||.++|     +.+..+..+.......
T Consensus       216 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~l~~~~~~~~~~~~~  290 (395)
T PRK10054        216 FLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIR-----PLMTAGTLCFVIGLVG  290 (395)
T ss_pred             HHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCch-----hHHHHHHHHHHHHHHH
Confidence            6666665556566777765543332  2222 222333344455566778899998887     6555555444443333


Q ss_pred             HHH-hhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHH
Q 012500          332 AFC-LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTL  410 (462)
Q Consensus       332 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  410 (462)
                      ... .++.+...+...+.+++.....+.....+.+..|++.++++.+..+ ..+. |..+||.+.|.+.|+.| +...+.
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~-G~~~Gp~~~G~l~~~~g-~~~~~~  367 (395)
T PRK10054        291 FIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWL-GAAINPLVSGVILTTLP-PWSLFV  367 (395)
T ss_pred             HHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHH-HHHHHHHHHHHHHHHcC-hhhHHH
Confidence            332 2445445556666667766666666677778888899999988763 4444 89999999999999986 434444


Q ss_pred             HH
Q 012500          411 AL  412 (462)
Q Consensus       411 ~~  412 (462)
                      ..
T Consensus       368 ~~  369 (395)
T PRK10054        368 IL  369 (395)
T ss_pred             HH
Confidence            43

>TIGR00896 CynX cyanate transporter

Probab=99.97  E-value=7.3e-30  Score=235.90  Aligned_cols=330  Identities=14%  Similarity=0.029  Sum_probs=236.3

Q ss_pred             HHHHhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHH
Q 012500           12 IGLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAI   90 (462)
Q Consensus        12 ~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~   90 (462)
                      ++.++|.+.++   ++.++.+.++  ..+.+.++..+++++.|++ ||+|||+++..+.++..++.+.+ .+++++.+++
T Consensus        19 ~~~~lp~l~~~---~~~s~~~~g~--~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~   92 (355)
T TIGR00896        19 VGPLLPQIRSA---LGMSFSVAGL--LTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFA   92 (355)
T ss_pred             CcccHHHHHHH---hCCCHHHHHH--HHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHH
Confidence            34557765555   7888888666  9999999999999999999 99999999999999988888877 7889999999


Q ss_pred             HHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhccc--chHHHHHHHHHHHHHHHHHH
Q 012500           91 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL--NWRYAFWGEAILMLPFAVLA  168 (462)
Q Consensus        91 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~--gwr~~f~~~~~~~~~~~~~~  168 (462)
                      .|++.|++.+...+....++.|++| ++|++++++.+.+.++|..+++.+++.+.++.  +||+.|...++..++..   
T Consensus        93 ~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~---  168 (355)
T TIGR00896        93 GTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL---  168 (355)
T ss_pred             HHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---
Confidence            9999999999888888889999997 68999999999999999999999998887764  39999988766543322   


Q ss_pred             hhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHH
Q 012500          169 FVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYV  248 (462)
Q Consensus       169 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (462)
                      ....|+.+++.   ++++..                               +              ....++.+|+|.++
T Consensus       169 ~~~~~~~~~~~---~~~~~~-------------------------------~--------------~~~~~~~~~~~~~~  200 (355)
T TIGR00896       169 LAWIPQVRRRV---AANQTT-------------------------------T--------------RLTPVRIWRSPLAW  200 (355)
T ss_pred             HHHhhhhcccc---CCCCCC-------------------------------C--------------CCCCchhhcCHhHH
Confidence            22234321110   000000                               0              00123456778887


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHH
Q 012500          249 VNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI  327 (462)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  327 (462)
                      ...+..++..........|+|.|+++ .+.++... ...+...++.++++++.|++.||+++|+    +.+.....+...
T Consensus       201 ~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~----~~~~~~~~~~~~  275 (355)
T TIGR00896       201 QVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQR----GIVAVLAVLQLV  275 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccch----HHHHHHHHHHHH
Confidence            77666666666777788899999987 57775554 4557778889999999999999995441    444444444433


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCC-cchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchh
Q 012500          328 SCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVK-PSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWR  406 (462)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~  406 (462)
                      ..+......+.... ....+.+++.+...+.......+..+ ++.++...++.+...+. +..++|.+.|++.|+.|+|.
T Consensus       276 ~~~~~~~~~~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       276 GLCGLLFAPMHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYL-LAALGPLFVGVLHDISGNWL  353 (355)
T ss_pred             HHHHHHHhhhhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccC
Confidence            33333332222222 23445666666665554455544444 46778888887655555 77889999999999988764

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.97  E-value=2.7e-29  Score=235.55  Aligned_cols=318  Identities=13%  Similarity=0.055  Sum_probs=234.7

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccc
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS  104 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~  104 (462)
                      ++.++.+.+.  ..+.+.++..+++++.|++ ||+|||+++..+.++..++.+++.+++|++.+++.|++.|++.+...+
T Consensus        38 ~~~s~~~~~~--~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~  115 (394)
T PRK11652         38 LNVREGAVQA--VMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGV  115 (394)
T ss_pred             hCCCHHHHHH--HHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHH
Confidence            7888888655  9999999999999999999 999999999999999999999999999999999999999999988888


Q ss_pred             cccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCccc
Q 012500          105 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAES  184 (462)
Q Consensus       105 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  184 (462)
                      ....+..|.+++++|++++++.+.+..+|..++|.+++.+.++.|||+.|++.++..++..+...+..||+++..    +
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~----~  191 (394)
T PRK11652        116 MARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPAD----A  191 (394)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCccc----c
Confidence            888889999999999999999999999999999999999999899999999998877666665555556532110    0


Q ss_pred             cccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 012500          185 GKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAY  264 (462)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (462)
                       ++.                                            +..+++++.+++|.++...+..+........+
T Consensus       192 -~~~--------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (394)
T PRK11652        192 -RRT--------------------------------------------RVLASYRTLLSNRRFNCYLLMLIGTLAGIAVF  226 (394)
T ss_pred             -chh--------------------------------------------HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence             000                                            00234667778888777666555555555566


Q ss_pred             HHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHH-HHHHHHHHHHHHHHH--hhhhHH
Q 012500          265 SYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLS-AATFLGAISCLTAFC--LSSLYG  340 (462)
Q Consensus       265 ~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~  340 (462)
                      ..+.|.++++.++.++... .......++.+++.++.+++.||.+++     .... ...............  ..+.+.
T Consensus       227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (394)
T PRK11652        227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL-----MWQSVICCLLAGLLMWIPGWFGVMNVWT  301 (394)
T ss_pred             HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            6677888888788876544 333445566677777778888877633     2222 222222222222111  123344


Q ss_pred             HHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhh
Q 012500          341 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  401 (462)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~  401 (462)
                      ......+.+++.+...+.......+..| ++++++.++.+..... |..+++.+.+.+.+.
T Consensus       302 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~l-g~~~~~~~~~~~~~~  360 (394)
T PRK11652        302 LLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNI-GSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHH-HHHHHHHHHHHccCC
Confidence            5555666677777777777777777665 6789999999766555 888888888877654

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.97  E-value=1e-28  Score=235.98  Aligned_cols=350  Identities=13%  Similarity=0.083  Sum_probs=239.7

Q ss_pred             HhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-ccc-----CCchh-HHHHHHHHHHHHHhhhcc---ch
Q 012500           15 ILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSH-----NPFRL-IGVGLSVWTFATAGCGSS---FD   84 (462)
Q Consensus        15 ~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~   84 (462)
                      .+|...++   .+.+..+.+.  . +...... +..+++|.+ ||+     ||||. +..+.+..+++..++++.   ++
T Consensus        34 ~l~~~l~~---~g~~~~~ig~--~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~  106 (491)
T PRK11010         34 TLQAWMTV---ENIDLKTIGF--F-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQ  106 (491)
T ss_pred             HHHHHHHh---CCCCHHHHHH--H-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcch
Confidence            35655555   4666666554  2 2222222 567788888 888     99985 667888887887777665   47


Q ss_pred             hHHHHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhc-ccchHHHHHHHHHHHHH
Q 012500           85 FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-HLNWRYAFWGEAILMLP  163 (462)
Q Consensus        85 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~~gwr~~f~~~~~~~~~  163 (462)
                      ++.+.+.+++.|++.+...+...+++.|++|++||+++.++...+..+|.++++.++.++.+ ..|||..|++.+++.++
T Consensus       107 l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll  186 (491)
T PRK11010        107 LRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIP  186 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999999999999999999999999999998 57999999999987766


Q ss_pred             HHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhh
Q 012500          164 FAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQ  243 (462)
Q Consensus       164 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (462)
                      ..+..++ .||+++..   ++++..                        +                  +...++++++++
T Consensus       187 ~~l~~~~-~~e~~~~~---~~~~~~------------------------~------------------~~~~~~l~~~~~  220 (491)
T PRK11010        187 CIIATLL-APEPTDTI---PVPKTL------------------------E------------------QAVVAPLRDFFG  220 (491)
T ss_pred             HHHHHHh-cCCCcccc---ccccch------------------------h------------------hhHHHHHHHHHc
Confidence            6554443 45532110   000000                        0                  000124556777


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchhhhh--hhHHHhhhhhhhhhhHHHhhhccccccchhHHHHH
Q 012500          244 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFG--GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA  321 (462)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  321 (462)
                      ++..+...+..++..........+.+.|+.+..|.++.+....  ....++.+++.+++|+++||+++|     +.+...
T Consensus       221 ~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~-----~~l~i~  295 (491)
T PRK11010        221 RNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLF-----RALMIF  295 (491)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHH
Confidence            7777766665555556666666778888877788887666433  344578899999999999999987     555443


Q ss_pred             HHHHHHHH---HHHHHh-hhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHH
Q 012500          322 TFLGAISC---LTAFCL-SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGV  397 (462)
Q Consensus       322 ~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~  397 (462)
                      ..+..+..   ...... ++.+......++..++.+...+...+...+..+++.+++..++.+...+. |..+++.+.|+
T Consensus       296 ~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~l-g~~~~~~~~G~  374 (491)
T PRK11010        296 GILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAV-GRVYVGPVAGW  374 (491)
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            33222211   111121 23333333334433334444444566677778888899999999766665 87778889999


Q ss_pred             HHhhhcchhHHHHHHHHHHHHHHHHHH
Q 012500          398 LQDHVNNWRKTTLALTSIFFLAAGIWF  424 (462)
Q Consensus       398 l~~~~g~~~~~~~~~~~~~~~~~~~~~  424 (462)
                      +.|..| |...|.+...+.+.+.+...
T Consensus       375 l~~~~G-~~~~f~~~~~~~l~~l~~~~  400 (491)
T PRK11010        375 FVEAHG-WPTFYLFSVAAAVPGLLLLL  400 (491)
T ss_pred             HHHHhC-hHHHHHHHHHHHHHHHHHHH
Confidence            999876 77777777777666555544

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.97  E-value=4.7e-29  Score=231.92  Aligned_cols=325  Identities=15%  Similarity=0.104  Sum_probs=224.9

Q ss_pred             HHhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccc-hhHHHHHH
Q 012500           14 LILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSF-DFWSIAIC   91 (462)
Q Consensus        14 ~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~   91 (462)
                      ..+|.+++++  ++.++.+.++  ..+.+.+++.+++++.|++ ||+|||+++..+.++..++.+++++++ +++.+++.
T Consensus        22 ~~~~~~~~~~--~~~s~~~~~~--~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   97 (366)
T TIGR00886        22 PLAVQMIKDD--LGLSTAQLGN--LVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLL   97 (366)
T ss_pred             HhhhHHHHHH--hCCCHHHhhH--hhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            3356434333  7888888655  9999999999999999999 999999999999999999999999999 99999999


Q ss_pred             HHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhc----------ccchHHHH-HHHHHH
Q 012500           92 RMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS----------HLNWRYAF-WGEAIL  160 (462)
Q Consensus        92 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~----------~~gwr~~f-~~~~~~  160 (462)
                      |+++|++.+. .+....++.|++|+++|++++++.....++|..+++.+++.+..          +.+||+.| +..+++
T Consensus        98 ~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~  176 (366)
T TIGR00886        98 RLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGI  176 (366)
T ss_pred             HHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHH
Confidence            9999998664 56678899999999999999999998888888888877766554          34899999 444655


Q ss_pred             HHHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHH
Q 012500          161 MLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKV  240 (462)
Q Consensus       161 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (462)
                      ..+..++.+...+|++++.++++  +...+          +.    ....++       +             ..++.++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----------~~----~~~~~~-------~-------------~~~~~~~  220 (366)
T TIGR00886       177 LLLPALLIFFVGADTPPGKPATG--KLSFK----------GA----RWSVGT-------G-------------ALGDQLK  220 (366)
T ss_pred             HHHHHHHHHHhcccCCcccccch--hcccc----------cc----cccccc-------h-------------hHHHHHH
Confidence            55555555555555432210000  00000          00    000000       0             0113445


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHH
Q 012500          241 LLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLS  319 (462)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  319 (462)
                      .+++|.++...+..++..........+.|.|+++.++.++... .+.....+..++++++.|++.||+++|     +...
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~-----~~~~  295 (366)
T TIGR00886       221 VFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGA-----RKLL  295 (366)
T ss_pred             HHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccc-----hhHH
Confidence            6788888887777666666677788899999999888886555 345667788889999999999999997     4443


Q ss_pred             HHHHHHHHHHH-HHHHhh---hhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhh
Q 012500          320 AATFLGAISCL-TAFCLS---SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHI  385 (462)
Q Consensus       320 ~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (462)
                      ........... +.....   +.+..+....+..++.+...+.......+.. ++++|++.|+.+...+.
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~  364 (366)
T TIGR00886       296 MSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIF-RRATGAVSGLVGAIGNL  364 (366)
T ss_pred             HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhc-hhhcccHHHHHHHhccC
Confidence            33332222222 222112   3444444445555566666666666666655 47899999998655443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=9.2e-30  Score=219.88  Aligned_cols=344  Identities=14%  Similarity=0.034  Sum_probs=254.4

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccc
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS  104 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~  104 (462)
                      .+.++++  .|++...+.+.+++.+|+.|.+ ||+|+|..+++|++.+..+++++++.+++++++++|.+||+|.++..+
T Consensus       101 ~~~e~~~--iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t  178 (464)
T KOG3764|consen  101 LDRENTQ--IGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT  178 (464)
T ss_pred             ccccccc--hhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence            4445555  4559999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             cccchhcccCCCC-CchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCcc
Q 012500          105 LAAPFIDDNAPVP-QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAE  183 (462)
Q Consensus       105 ~~~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  183 (462)
                      .+.++++|.+|++ +|++++|+.-.+.++|.++||++||.+.+..|.+.+|++.+++.++-..+.+++++.+....+  +
T Consensus       179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~--~  256 (464)
T KOG3764|consen  179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPD--S  256 (464)
T ss_pred             hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCcc--c
Confidence            9999999999965 589999999999999999999999999999999999999999999999988888754221110  1


Q ss_pred             ccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 012500          184 SGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGA  263 (462)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (462)
                      .++                                                ..++++++++|..+.........+.....
T Consensus       257 ~~~------------------------------------------------~~~~~~Ll~dP~I~~~agai~~~n~~laf  288 (464)
T KOG3764|consen  257 TEQ------------------------------------------------GTPMWSLLMDPYILLIAGAITFSNSSLAF  288 (464)
T ss_pred             ccc------------------------------------------------CccHHHHHhCchHhhhhcchhhccchHHH
Confidence            111                                                12467889999998887766666666655


Q ss_pred             HHHHhhHHHHHHhCCCcchhhhh-hhHHHhhhhhhhhhhHHHhhhccccccchhHH-HHHHHHHHHHHHHHHHhhhhHHH
Q 012500          264 YSYWGPKAGYNIYHMSNADMMFG-GVTIVCGIVGTISGGFILDQMGATISNAFKLL-SAATFLGAISCLTAFCLSSLYGF  341 (462)
Q Consensus       264 ~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  341 (462)
                      .--.++.+..+....+.-...+. ....+...++..+.|.+.||++...    +.+ ..+.+.....+......++....
T Consensus       289 LePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~----wl~~~~gl~~~G~~~~~iP~~~~~~~L  364 (464)
T KOG3764|consen  289 LEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLR----WLLSLGGLATVGVSSGPIPFATSIAQL  364 (464)
T ss_pred             hCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchh----HHHHHHHHHHHHHHhchhHhhhhHHHH
Confidence            66667777788777443233333 3456777899999999999999541    222 23333333333333444444333


Q ss_pred             HHHH---HHHHHHHHhccccceeeeeccCCcc---hhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHH
Q 012500          342 LALF---TVGELLVFATQAPVNYVCLHSVKPS---LRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  415 (462)
Q Consensus       342 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  415 (462)
                      ++-.   ++.+........+...+..+.-..+   ..|...++....... |.++||.++|.+.+..| +.+.....++.
T Consensus       365 ~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sl-a~a~GP~~gg~iv~~iG-F~wl~~iig~~  442 (464)
T KOG3764|consen  365 WVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSL-AYAIGPTFGGSLVEAIG-FEWLMTIIGIL  442 (464)
T ss_pred             hhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHH-hhhccccccchheeehh-HHHHHHHHHHH
Confidence            3333   3333333344445555555554444   678899999756555 99999999999999988 66666555555


Q ss_pred             HHHHHHHHHHHH
Q 012500          416 FFLAAGIWFVGI  427 (462)
Q Consensus       416 ~~~~~~~~~~~~  427 (462)
                      .+...-++...+
T Consensus       443 n~iyapvl~ll~  454 (464)
T KOG3764|consen  443 NLIYAPVLLLLR  454 (464)
T ss_pred             HHHHHHHHHHHH
Confidence            555444444333

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.97  E-value=2.6e-28  Score=227.44  Aligned_cols=339  Identities=12%  Similarity=0.031  Sum_probs=239.6

Q ss_pred             HHHHhh---hhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCc----hhHHHHHHHHHHHHHhhhccc
Q 012500           12 IGLILK---RSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPF----RLIGVGLSVWTFATAGCGSSF   83 (462)
Q Consensus        12 ~~~~~p---~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr----~~l~~~~~~~~~~~~~~~~~~   83 (462)
                      .+...|   .+.++   ++.+..+.+.  ..+.+.++..+++++.|++ ||+|||    +.+.++..+.  .......++
T Consensus        20 ~g~~~p~l~~~l~~---~g~s~~~iG~--~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~   92 (382)
T PRK11128         20 YGVFLPFWSVWLKG---QGYTPETIGL--LLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAH   92 (382)
T ss_pred             HHHHhhhHHHHHHh---cCCCHHHHHH--HHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcc
Confidence            444444   55554   6888888666  9999999999999999999 999994    3333222222  223344568


Q ss_pred             hhHHHHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHH
Q 012500           84 DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLP  163 (462)
Q Consensus        84 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~  163 (462)
                      +++.+++.|++.|++.+...|...+++.++  +++|+++++......++|.++||++++++.+++|||..|++.++..++
T Consensus        93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~  170 (382)
T PRK11128         93 SFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVAS  170 (382)
T ss_pred             cHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Confidence            899999999999999998899888888876  367888999999999999999999999999999999999988765444


Q ss_pred             HHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhh
Q 012500          164 FAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQ  243 (462)
Q Consensus       164 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (462)
                      ..+ ..+..||..+.    +++++.                             .             ++..+++++++|
T Consensus       171 ~~~-~~~~~~~~~~~----~~~~~~-----------------------------~-------------~~~~~~~~~i~~  203 (382)
T PRK11128        171 MLL-GQLLRPTIMPQ----GESRQQ-----------------------------E-------------SAGWPAWKALLK  203 (382)
T ss_pred             HHH-HHHccCCCCCc----cccccc-----------------------------c-------------ccccchHHHHHc
Confidence            333 23333432110    000000                             0             000124678889


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHH
Q 012500          244 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  322 (462)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  322 (462)
                      +|.++...+..++..........+.|.|.++ .|.++... .+.....+..++..++.+++.||++++     +.+..+.
T Consensus       204 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~-----~~l~~~~  277 (382)
T PRK11128        204 EPTVWRFLLCVSLLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSAR-----DLLLLSA  277 (382)
T ss_pred             ChhHHHHHHHHHHHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-----HHHHHHH
Confidence            9999988877777766666777788888866 67775444 333555677788888899999999988     6666666


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhh
Q 012500          323 FLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  402 (462)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~  402 (462)
                      .............++.+..++..++.+++.+...+....+..+. +++++++..+..+...+..|..++|.+.|.+.|..
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~  356 (382)
T PRK11128        278 ICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL  356 (382)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            66555555555566677677777777777776666666665554 56667888888864555557789999999999988


Q ss_pred             cchhHHHHHHHHH
Q 012500          403 NNWRKTTLALTSI  415 (462)
Q Consensus       403 g~~~~~~~~~~~~  415 (462)
                      |.  ..++..+++
T Consensus       357 g~--~~~~~~~~~  367 (382)
T PRK11128        357 GA--GVFWVMALV  367 (382)
T ss_pred             cH--HHHHHHHHH
Confidence            73  344444443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.97  E-value=7.7e-28  Score=227.70  Aligned_cols=343  Identities=17%  Similarity=0.133  Sum_probs=263.2

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHhhccc
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAICRMLVGVGE   99 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~   99 (462)
                      ++-|+..  .+++.....+..++.++++|.+ ||++||++++.+.++.++..+..++.     .+.+.+++.-++.|++.
T Consensus        40 lt~S~~~--valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~  117 (524)
T PF05977_consen   40 LTGSPLM--VALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGS  117 (524)
T ss_pred             HhCCHHH--HHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHH
Confidence            3444444  5559999999999999999999 99999999999988877665554432     37889999999999999


Q ss_pred             ccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccccCCC
Q 012500          100 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF  179 (462)
Q Consensus       100 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~  179 (462)
                      +...|+..+++.|.+|+++...++++.+...++..++||.++|.+....|-.++|.+.++..++.........++..+  
T Consensus       118 a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~--  195 (524)
T PF05977_consen  118 AFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPP--  195 (524)
T ss_pred             HHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc--
Confidence            999999999999999999999999999999999999999999999998899999999987655544433333221100  


Q ss_pred             CCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHH
Q 012500          180 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF  259 (462)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (462)
                        ++.+++                                         +..++....++.+.++|.+...++..++.+.
T Consensus       196 --~~~~~e-----------------------------------------~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l  232 (524)
T PF05977_consen  196 --SSLPRE-----------------------------------------RFFSALREGLRYVRSSPPLRSVLLRSFLFNL  232 (524)
T ss_pred             --cccchh-----------------------------------------hhhhhHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence              000000                                         1122334467777778877777666666666


Q ss_pred             HHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhh
Q 012500          260 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSL  338 (462)
Q Consensus       260 ~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (462)
                      ....+...+|.+.++..+.++..+ .+.+..++++++|.++.+++.+|++++     +++..+.+..+...+.....++.
T Consensus       233 ~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~-----~lv~~~~~~~a~~~~~lal~~~~  307 (524)
T PF05977_consen  233 FASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSR-----RLVLLASLLFALALLLLALSPSF  307 (524)
T ss_pred             hhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc-----hhhHHHHHHHHHHHHHHhcchHH
Confidence            666667778999999888887666 444778888899999988888888776     66666666666666666667778


Q ss_pred             HHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHHHH
Q 012500          339 YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFL  418 (462)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  418 (462)
                      +...+.+++.|++.........+......|++.||++++++++.... +..+|..+.|.+.|..| ....+...++..++
T Consensus       308 ~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g-~~~lGsll~G~la~~~g-~~~al~~a~~~lll  385 (524)
T PF05977_consen  308 WLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFG-GMPLGSLLWGFLADHFG-VRTALLIAGAALLL  385 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHH
Confidence            87788888888888888888888899999999999999999766665 88899999999999987 44555555544444


Q ss_pred             HHHH
Q 012500          419 AAGI  422 (462)
Q Consensus       419 ~~~~  422 (462)
                      +.++
T Consensus       386 ~~~~  389 (524)
T PF05977_consen  386 SALI  389 (524)
T ss_pred             HHHH
Confidence            3333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.97  E-value=6.6e-28  Score=256.21  Aligned_cols=329  Identities=12%  Similarity=-0.003  Sum_probs=238.7

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhh---ccchhHHHHHHHHHhhccccc
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCG---SSFDFWSIAICRMLVGVGEAS  101 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~g~  101 (462)
                      ++.+......++..+++.++++++++++|++ ||+|||++++.+.++..+..++..   .+++++.+++.|+++|++.+.
T Consensus        40 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~  119 (1146)
T PRK08633         40 YDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAI  119 (1146)
T ss_pred             cCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHh
Confidence            3444444445679999999999999999999 999999999998877665555443   457899999999999999999


Q ss_pred             ccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcc--------c-chHHHHHHHHHHHHHHHHHHhhcc
Q 012500          102 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH--------L-NWRYAFWGEAILMLPFAVLAFVIK  172 (462)
Q Consensus       102 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~--------~-gwr~~f~~~~~~~~~~~~~~~~~~  172 (462)
                      ..++..+++.|++|+++|++++++.+.+..+|.++|+.+++++.+.        + +|++.+.+..+...+..++..+..
T Consensus       120 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (1146)
T PRK08633        120 YSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRL  199 (1146)
T ss_pred             hchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999998875        2 355555444444333334444444


Q ss_pred             ccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHH
Q 012500          173 PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL  252 (462)
Q Consensus       173 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (462)
                      |+.+......++.+..                                        ...+.....++.+++++.++...+
T Consensus       200 ~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~l~~~~~~~~~~~  239 (1146)
T PRK08633        200 PKVPAAAPEVFDKKKY----------------------------------------LFPKLLWRNLKLLRSDRVLWLAII  239 (1146)
T ss_pred             cCCCCCCccccccccc----------------------------------------ccHHHHHHHHHHHhcCcHHHHHHH
Confidence            5543221110000000                                        000111235667788888888777


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhCCCcc-hh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHH
Q 012500          253 GYIAYNFVIGAYSYWGPKAGYNIYHMSNA-DM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  330 (462)
Q Consensus       253 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  330 (462)
                      ..++..........++|.|+.+.++.+.. .. .+.+...++.+++.++.+++.||++++     +.+..+.++.++..+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~-----~~~~~~~~~~~~~~~  314 (1146)
T PRK08633        240 GLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIEL-----GLVPLGALGLALSLF  314 (1146)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEc-----cchhHHHHHHHHHHH
Confidence            77777676777778899999998888865 44 444667788889999999999999877     555444444444444


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHh
Q 012500          331 TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  400 (462)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~  400 (462)
                      ......+.+..++..++.+++.+...++...++.+..|++.||+++|+.+...+. |.++++.+.+.+..
T Consensus       315 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~l-g~~~~~~~~~~l~~  383 (1146)
T PRK08633        315 LLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNV-GMLLFLALTTLFSG  383 (1146)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            4444456666666677777777777777788888889999999999999766665 77777766555544

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.96  E-value=2.6e-28  Score=258.20  Aligned_cols=331  Identities=12%  Similarity=-0.044  Sum_probs=240.2

Q ss_pred             chhhHHHHHHHHHhhhhhhccc-cccCCchhHHH---HHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccccccchh
Q 012500           35 SSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGV---GLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFI  110 (462)
Q Consensus        35 ~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i  110 (462)
                      .++..+.+.++++++++++|++ ||+|||+++..   ..+...+..+.....+|+++++++|+++|++.+...|+..+++
T Consensus        54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l  133 (1140)
T PRK06814         54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSIL  133 (1140)
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhh
Confidence            4558889999999999999999 99999997533   3333333333344458999999999999999999999999999


Q ss_pred             cccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCccccccccc
Q 012500          111 DDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVV  190 (462)
Q Consensus       111 ~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  190 (462)
                      .+++|+++|++++++.+++.++|.++||++++++.+..+|++.|+..++..++. ++..+.+|+.+.... ..+.+.   
T Consensus       134 ~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~---  208 (1140)
T PRK06814        134 PDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLG-WLASLFIPKTGNAAP-DLKIDR---  208 (1140)
T ss_pred             HhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-HHHHhhCCCCCCCCC-CCeecc---
Confidence            999999999999999999999999999999999999999999995554444433 334444454321100 000000   


Q ss_pred             cccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 012500          191 ASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPK  270 (462)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  270 (462)
                                                            ...++....++.+.+++.++...+..++.++....+..++|.
T Consensus       209 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  250 (1140)
T PRK06814        209 --------------------------------------NIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPL  250 (1140)
T ss_pred             --------------------------------------chHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHH
Confidence                                                  000111235777889999999888888887777788889999


Q ss_pred             HHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHH---------------
Q 012500          271 AGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC---------------  334 (462)
Q Consensus       271 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  334 (462)
                      |+++.++.++... .+.+...++.+++.++.|++.|+..++     +.+..+.++..+..+.+..               
T Consensus       251 ~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  325 (1140)
T PRK06814        251 LAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITL-----LYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSI  325 (1140)
T ss_pred             HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceee-----eeehHHHHHHHHHHHHHHhcccccccccccccch
Confidence            9999888886555 444777888899999999999877665     3222222222221111111               


Q ss_pred             -----hhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHH
Q 012500          335 -----LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTT  409 (462)
Q Consensus       335 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~  409 (462)
                           .++.+..++..++.+++.+...++..+.+.+..|++.+|+++|+.++.... +..+++.+.|.+.+...++...+
T Consensus       326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~-~~~ig~~~~g~l~~~~~~~~~~~  404 (1140)
T PRK06814        326 LVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAA-FMVAGTIILALLQALGFSIPWII  404 (1140)
T ss_pred             hhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHH-HHHHHHHHHHHHHHhccCHHHHH
Confidence                 144555566667777777777778889999999999999999999866555 88899999999886544454444


Q ss_pred             HHHHH
Q 012500          410 LALTS  414 (462)
Q Consensus       410 ~~~~~  414 (462)
                      ++.+.
T Consensus       405 ~~~~~  409 (1140)
T PRK06814        405 LFIAL  409 (1140)
T ss_pred             HHHHH
Confidence            43333

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.96  E-value=2.7e-27  Score=206.29  Aligned_cols=329  Identities=15%  Similarity=0.110  Sum_probs=264.7

Q ss_pred             HhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhh---ccchhHHHHH
Q 012500           15 ILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCG---SSFDFWSIAI   90 (462)
Q Consensus        15 ~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~   90 (462)
                      .+|...+.   ++++..+.+.  +...+..|+.+.+++.+++ +|+|+|+-++.|+.+++++..+..   ...++..+++
T Consensus        35 Lip~l~~~---f~ls~~~a~l--iqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~  109 (422)
T COG0738          35 LIPHLKEV---FDLTYFEASL--IQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLV  109 (422)
T ss_pred             hHHHHHHH---hCccHHHHHH--HHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence            37755554   7888888656  9999999999999999999 999999999999999999999984   6678999999


Q ss_pred             HHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcc-------------------cchH
Q 012500           91 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------------------LNWR  151 (462)
Q Consensus        91 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-------------------~gwr  151 (462)
                      +-++.|.|.+...+++..++....|+++..+.+++.+...++|.+++|++++.+..+                   ..||
T Consensus       110 ~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~  189 (422)
T COG0738         110 ALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQ  189 (422)
T ss_pred             HHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999998999999999999999999999999987762                   2488


Q ss_pred             HHHHHHHHHHHHHHHHHhhcc-ccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhh
Q 012500          152 YAFWGEAILMLPFAVLAFVIK-PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQ  230 (462)
Q Consensus       152 ~~f~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (462)
                      ++|...+....++.+...... |+....     .++....                                        
T Consensus       190 ~pYl~~~~~lvll~v~~~~~k~p~~~~~-----~~~~~~~----------------------------------------  224 (422)
T COG0738         190 FPYLILAGLLVLLAVLILLSKLPDLQVA-----APSLGAS----------------------------------------  224 (422)
T ss_pred             hHHHHHHHHHHHHHHHHHhccCCcCCcc-----ccccccc----------------------------------------
Confidence            899888877666655554443 221111     0000000                                        


Q ss_pred             hhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhcc
Q 012500          231 LSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGA  309 (462)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~  309 (462)
                       +  .....+++++|+++...++.+++-........|++.|+.+..+.+..+. .+.+..+.+.++|++++.++..|+..
T Consensus       225 -~--~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~  301 (422)
T COG0738         225 -G--SAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKP  301 (422)
T ss_pred             -c--cchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence             0  0035678899999999999999999999999999999999878786655 56688899999999999999999988


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccc
Q 012500          310 TISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDV  389 (462)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  389 (462)
                      .     +.+....+.....+......++. ..+....+.+++.+..+|.+.+...+..| ++...+.++.  ....+|++
T Consensus       302 ~-----k~Laf~a~~~ill~~~~~l~~g~-v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~l--~maivGGA  372 (422)
T COG0738         302 E-----KYLAFYALIAILLLLAVALIGGV-VALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLL--VMAIVGGA  372 (422)
T ss_pred             H-----HHHHHHHHHHHHHHHHHHHhcCh-HHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccceee--eeheecch
Confidence            8     88877777777777766666664 44556666788999999999999999998 4444444444  44555999


Q ss_pred             cchhHHHHHHhhhcch
Q 012500          390 PSSPLVGVLQDHVNNW  405 (462)
Q Consensus       390 ~~~~~~g~l~~~~g~~  405 (462)
                      +-|++.|++.|+.|..
T Consensus       373 iiP~l~G~i~d~~g~~  388 (422)
T COG0738         373 IIPPLQGVIADMFGIQ  388 (422)
T ss_pred             HHHHHHHHHHHhhhhH
Confidence            9999999999998843

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.96  E-value=5.4e-28  Score=228.40  Aligned_cols=352  Identities=15%  Similarity=0.052  Sum_probs=223.3

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhh---ccc-----hhH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCG---SSF-----DFW   86 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~---~~~-----~~~   86 (462)
                      +|.+++++  ++.++.+.+.  ..+.+.++..+++++.|++ ||+|||+++..+..+.+++.....   .++     ...
T Consensus        33 ~~~~l~~~--~g~s~~~~g~--~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (420)
T PRK09528         33 FPIWLHDI--NGLSGTDTGI--IFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILL  108 (420)
T ss_pred             HHHHHHHh--cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444443  6778888666  9999999999999999999 999999999887666555443221   111     111


Q ss_pred             HHHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHH
Q 012500           87 SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV  166 (462)
Q Consensus        87 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~  166 (462)
                      ..++++++.|.+.....+....+..+ . ++++++.++......++|..++|.+++.+.+ .+|+++|++.+++.++..+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~  185 (420)
T PRK09528        109 GAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLV  185 (420)
T ss_pred             HHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHH
Confidence            12333444444333333333333222 2 3567888899999999999999999998876 4899999998887776666


Q ss_pred             HHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhH
Q 012500          167 LAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKV  246 (462)
Q Consensus       167 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (462)
                      +.++..|++++..+   ..++.             +            +  +++           +...++.++.+|+|.
T Consensus       186 ~~~~~~~~~~~~~~---~~~~~-------------~------------~--~~~-----------~~~~~~~~~~l~~~~  224 (420)
T PRK09528        186 LLFFAKPDAPSTAK---VANAL-------------G------------A--NAS-----------AVSLKDALALLKLPK  224 (420)
T ss_pred             HHhcccccccchhh---hccch-------------h------------c--ccc-----------cccHHHHHHHccCCC
Confidence            65555443221100   00000             0            0  000           000123556778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhC---CCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHH
Q 012500          247 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH---MSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  322 (462)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  322 (462)
                      ++...+..............+.|.|+.+..+   .+.... ...++..+...++.++.|++.||+++|     +.+....
T Consensus       225 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~~~~~~  299 (420)
T PRK09528        225 FWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAK-----NALLLAG  299 (420)
T ss_pred             eEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-----hhhHHHH
Confidence            7766655544444455555567777766542   222222 333555667788999999999999998     6666555


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHH-HHHHHhhhccccchhHHHHHHhh
Q 012500          323 FLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAI-STVSIHIFGDVPSSPLVGVLQDH  401 (462)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~l~~~  401 (462)
                      .+......+....++.+..+....+.+...+...+....+..+..|++.+++..+. .++..+ +|.+++|.+.|++.|.
T Consensus       300 ~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-lg~~ig~~~~G~l~~~  378 (420)
T PRK09528        300 TIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQ-LGAVFLSTLAGNLYDS  378 (420)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHH-HHHHHHHHHHHHHHHh
Confidence            55555544444455666555555566665555555556677788888888887665 444444 4999999999999998


Q ss_pred             hcchhHHHHHHHHHHHHHHHH
Q 012500          402 VNNWRKTTLALTSIFFLAAGI  422 (462)
Q Consensus       402 ~g~~~~~~~~~~~~~~~~~~~  422 (462)
                      .| |+..+...+.+.++...+
T Consensus       379 ~G-~~~~f~~~~~~~~i~~~~  398 (420)
T PRK09528        379 IG-FQGTYLILGGIVLLFTLI  398 (420)
T ss_pred             hC-chHHHHHHHHHHHHHHHH
Confidence            77 777777766665444433

>TIGR00889 2A0110 nucleoside transporter

Probab=99.96  E-value=3.6e-27  Score=221.28  Aligned_cols=338  Identities=10%  Similarity=-0.004  Sum_probs=228.9

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCC-chhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhccccccc
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNP-FRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFI  103 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~  103 (462)
                      ++.+..+.|+  +.+.+.++.++++++.|++ ||+|| |+++..+.++.+++..+..+.++++.+++.|++.|++.+...
T Consensus        33 ~g~s~~~iGl--~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  110 (418)
T TIGR00889        33 LHFSGAEIGW--VYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTI  110 (418)
T ss_pred             cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHH
Confidence            6888888666  9999999999999999999 99965 778888889998999899999999999999999999877776


Q ss_pred             ccccchhc--------ccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccc
Q 012500          104 SLAAPFID--------DNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  175 (462)
Q Consensus       104 ~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~  175 (462)
                      +...++..        |......|.+.+|      .+|.++||.+++.+....+|+ +|++.++..++..++ .+..||+
T Consensus       111 ~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~-~~~~~e~  182 (418)
T TIGR00889       111 ALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVF-ALTLPDI  182 (418)
T ss_pred             HHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHH-HhcCCCC
Confidence            66555432        2233234555555      368888898888774433455 455666655554443 3445654


Q ss_pred             cCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHH
Q 012500          176 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  255 (462)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (462)
                      ++..   ++++..                        ..                 +....+.++++|+|.++...+..+
T Consensus       183 ~~~~---~~~~~~------------------------~~-----------------~~~~~~~~~~~k~~~~~~~~~~~~  218 (418)
T TIGR00889       183 PVAK---STAKMS------------------------IK-----------------VMLGLDAFILFKNKRMAIFFFFSM  218 (418)
T ss_pred             CCCc---cccccC------------------------HH-----------------HHhhhhHHHHhcCCCeeeHHHHHH
Confidence            2110   000000                        00                 000012445778888877777666


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhCCCc--------ch-hhhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHH
Q 012500          256 AYNFVIGAYSYWGPKAGYNIYHMSN--------AD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  326 (462)
Q Consensus       256 ~~~~~~~~~~~~~p~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  326 (462)
                      +..........+.|.++++.. .++        .. ....++..+..+++.+..|++.||+++|     +.+..+.++..
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r-----~~l~~~~~~~~  292 (418)
T TIGR00889       219 LLGAPLQITNIFGNGFLHEFG-RNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK-----KVMLLSLVAWA  292 (418)
T ss_pred             HHHhHHHHHHHhHHHHHHHhc-ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHHHHHHHHH
Confidence            665555556677788877643 221        12 2334666777888899999999999998     77776666665


Q ss_pred             HHHHHHHHhh-h---hHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhh
Q 012500          327 ISCLTAFCLS-S---LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  402 (462)
Q Consensus       327 ~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~  402 (462)
                      +......... +   .+..+...++.+++.+...+....++.+..|++.|+++.|+.+...+.+|.+++|.+.|++.|+.
T Consensus       293 v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~  372 (418)
T TIGR00889       293 LRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKM  372 (418)
T ss_pred             HHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence            5544333322 1   23344455666666666666667778889999999999999964555558999999999999987


Q ss_pred             cc-----hhHHHHHHHHHHHHHHHHH
Q 012500          403 NN-----WRKTTLALTSIFFLAAGIW  423 (462)
Q Consensus       403 g~-----~~~~~~~~~~~~~~~~~~~  423 (462)
                      |+     |+..+...+.+.+++.++.
T Consensus       373 g~~~~~~~~~~f~~~~~~~~i~~~l~  398 (418)
T TIGR00889       373 FAYGTFDWQTMWLFFAGYIAILAVLF  398 (418)
T ss_pred             ccccCCchHHHHHHHHHHHHHHHHHH
Confidence            63     7777776666655544433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=4.9e-28  Score=233.30  Aligned_cols=388  Identities=14%  Similarity=0.122  Sum_probs=254.3

Q ss_pred             chhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccccccchhccc
Q 012500           35 SSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDN  113 (462)
Q Consensus        35 ~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~  113 (462)
                      .+|+.+.+.++..++++++|++ |++|||+.++++.+++.++++++++++|+++++++|++.|+|.|......+.+++|.
T Consensus        91 ~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEi  170 (513)
T KOG0254|consen   91 QGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEI  170 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhc
Confidence            3779999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcc-cchHHHHHHHHHHHHHHHHHHhhccccccCCCCCccccccccccc
Q 012500          114 APVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVAS  192 (462)
Q Consensus       114 ~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  192 (462)
                      .|++.||...+..+....+|..++..++....+. .+||..+.+..+.+++..+. .++.||+|++..+..+.++  .++
T Consensus       171 ap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~--a~~  247 (513)
T KOG0254|consen  171 APAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEE--AKR  247 (513)
T ss_pred             CChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHH--HHH
Confidence            9999999999999999999999996555555433 58999999999999888888 7778998887644222211  111


Q ss_pred             cccccccccccccccccccchhhhhh-hhccccccchhhhhcchhhHHHHhh----hhHHHHHHHHHHHHHHHHHHHHHH
Q 012500          193 VSEGSEASNLNDHVSEDISDQASERS-IKSIGESRFLNQLSQFSQDTKVLLQ----EKVYVVNVLGYIAYNFVIGAYSYW  267 (462)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  267 (462)
                      ....+.... +++...+.++...... +......         ....+.+++    ++......+..+....+.+...+|
T Consensus       248 ~l~~l~g~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y  317 (513)
T KOG0254|consen  248 SLKRLRGLS-PEDVEVELELLKIKLLVEAEVAEG---------KASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYY  317 (513)
T ss_pred             HHHHHhCCC-CcchHHHHHHHHHHHHHhhhcccc---------cccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEee
Confidence            111111111 0000111111110000 0000000         001222222    233333333334444445666678


Q ss_pred             hhHHHHHHhCCCcchhhhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHh------------
Q 012500          268 GPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL------------  335 (462)
Q Consensus       268 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  335 (462)
                      .+.+++.....++. .....+..+..+++.+++.++.||+|||     +.++.+.....++..+....            
T Consensus       318 ~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr-----~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~  391 (513)
T KOG0254|consen  318 STTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRR-----KLLLFGAAGMSICLVILAVVGVFALYYPNSSK  391 (513)
T ss_pred             hHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHhHHHHHHHHHHHHHHHHHhccCCCccc
Confidence            88887776554433 3344566777788888889999999999     77766665555544433221            


Q ss_pred             hhhHHHHHHHHHHHHHHHhccccceeee-eccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHH
Q 012500          336 SSLYGFLALFTVGELLVFATQAPVNYVC-LHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTS  414 (462)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~  414 (462)
                      ...+..++..++....+.....++++.+ .|.+|.+.|+.+.++.....+.....+ ......+.+..+ ....+..+..
T Consensus       392 ~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v-~~~~~~~~~~~~-~~~~f~~f~~  469 (513)
T KOG0254|consen  392 GAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLI-SFFFPFITEALG-IGGTFGYFGG  469 (513)
T ss_pred             chhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHhcc-ccchHHHHHH
Confidence            1123455566666667777788888755 555666999999999976666644444 445555555433 1123333333


Q ss_pred             HHHHHHHHHHHHHhhcc-ccccchhhhcccC
Q 012500          415 IFFLAAGIWFVGIFLKS-IDKFNEDGENQIS  444 (462)
Q Consensus       415 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  444 (462)
                      ........ +.....|| |++..|+.++...
T Consensus       470 ~~~~~~~~-fv~~~~pETkg~sleei~~~~~  499 (513)
T KOG0254|consen  470 ICLLSLII-FVFFFVPETKGLTLEEINELFE  499 (513)
T ss_pred             HHHHHHHH-HheEEcccCCCCcHHHHHHHHH
Confidence            32222221 33345566 7777777666443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.96  E-value=3.6e-27  Score=221.13  Aligned_cols=351  Identities=12%  Similarity=0.032  Sum_probs=232.7

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhh---hcc-----chhH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGC---GSS-----FDFW   86 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~---~~~-----~~~~   86 (462)
                      +|.++.++  ++.++.+.+.  ..+.+.++..+++++.|++ ||+|||+.+..+....+++....   .+.     +.+.
T Consensus        25 ~~~~~~~~--~g~s~~~~g~--~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (396)
T TIGR00882        25 FPIWLHDV--NGLSKTDTGI--VFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILV  100 (396)
T ss_pred             HHHHHHHh--cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            55555544  6778888666  9999999999999999999 99999999988776665544322   122     2234


Q ss_pred             HHHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHH
Q 012500           87 SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV  166 (462)
Q Consensus        87 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~  166 (462)
                      .+++.|++.|++.+...+....+..|..  +++++.++......++|.++||.+++.+.+ .+||.+|++.+++.++..+
T Consensus       101 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~  177 (396)
T TIGR00882       101 GAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILML  177 (396)
T ss_pred             HHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHH
Confidence            4567788999988888888777776653  344567788888889999999999998865 5999999999888877766


Q ss_pred             HHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhH
Q 012500          167 LAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKV  246 (462)
Q Consensus       167 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (462)
                      +.+...|+++++    ++.+.. .                 +   .+   .+             +...++.++++|+|.
T Consensus       178 ~~~~~~~~~~~~----~~~~~~-~-----------------~---~~---~~-------------~~~~~~~~~~l~~~~  216 (396)
T TIGR00882       178 LLMFAKPKAPSS----ATVANA-L-----------------G---AN---AS-------------AFSLKLALELFRQRK  216 (396)
T ss_pred             HHHHhCCCCchh----hhhhcc-c-----------------c---cc---cC-------------CCCHHHHHHHHcCCc
Confidence            665544442111    000000 0                 0   00   00             000124567888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhC---CCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHH
Q 012500          247 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH---MSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  322 (462)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  322 (462)
                      ++...+..+...........+.|.|+++.++   .+.... ...+...+...++.+..+++.||+++|     +.+..+.
T Consensus       217 ~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~-----~~l~~~~  291 (396)
T TIGR00882       217 FWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAK-----NALLIAG  291 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hhHHHHH
Confidence            8777666555555555666677888877653   222222 233555667777888999999999998     6666655


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHH-HHHHHhhhccccchhHHHHHHhh
Q 012500          323 FLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAI-STVSIHIFGDVPSSPLVGVLQDH  401 (462)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~l~~~  401 (462)
                      .+...........++.+..+...++.+.+.............+..+++.++++.+. .+.... +|++++|.+.|++.|.
T Consensus       292 ~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~-lg~~~~~~l~G~l~~~  370 (396)
T TIGR00882       292 TIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQ-LAMIFLSTLAGNMYDS  370 (396)
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHH-HHHHHHHHhHHHHHHh
Confidence            55555444434455666555555555555444333334455566677777776666 444444 4999999999999998


Q ss_pred             hcchhHHHHHHHHHHHHHHH
Q 012500          402 VNNWRKTTLALTSIFFLAAG  421 (462)
Q Consensus       402 ~g~~~~~~~~~~~~~~~~~~  421 (462)
                      .| +...+...+++.++..+
T Consensus       371 ~G-~~~~f~~~~~~~~i~~~  389 (396)
T TIGR00882       371 IG-FQGAYLVLGCIVLLFTL  389 (396)
T ss_pred             cc-cHHHHHHHHHHHHHHHH
Confidence            76 77777777666544433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.96  E-value=1.4e-26  Score=217.35  Aligned_cols=342  Identities=15%  Similarity=0.069  Sum_probs=227.1

Q ss_pred             HHhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-ccc-----CCch-hHHHHHHHHHHHHHhhhcc---c
Q 012500           14 LILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSH-----NPFR-LIGVGLSVWTFATAGCGSS---F   83 (462)
Q Consensus        14 ~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~-----Grr~-~l~~~~~~~~~~~~~~~~~---~   83 (462)
                      ..+|.++++   .+.+.++.|.  +......  .+..+++|++ ||+     |||| ++..+.++.+++..+.++.   +
T Consensus        20 ~~~~~~l~~---~g~~~~~ig~--~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~   92 (402)
T PRK11902         20 GTLQAWMTV---EGLDIQTIGF--FSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHA   92 (402)
T ss_pred             HHHHHHHHH---cCCCHHHHHH--HHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccc
Confidence            337878877   5888888776  5444443  5888999999 999     8876 7888888888888877776   4


Q ss_pred             hhHHHHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcc-cchHHHHHHHHHHHH
Q 012500           84 DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILML  162 (462)
Q Consensus        84 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-~gwr~~f~~~~~~~~  162 (462)
                      +++.+++..++.++..+...++..+++.|++|+|||+++.++...+..+|.++++.+++.+.+. .|||..|++.++..+
T Consensus        93 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l  172 (402)
T PRK11902         93 ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLML  172 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHH
Confidence            5788888888888888889999999999999999999999999999999999999999998885 599999999988776


Q ss_pred             HHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHh
Q 012500          163 PFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLL  242 (462)
Q Consensus       163 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (462)
                      +..+. .+..||+++..    ++++.                        .                 .++..+++++++
T Consensus       173 ~~~l~-~~~~~e~~~~~----~~~~~------------------------~-----------------~~~~~~~~~~l~  206 (402)
T PRK11902        173 AGALT-TLWAPEPEVPA----RPPRS------------------------L-----------------GEAVVGPLRDFF  206 (402)
T ss_pred             HHHHH-HHhcCCCcccc----cccch------------------------h-----------------HHHHHHHHHHHH
Confidence            55443 33445432110    00000                        0                 000123567788


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchhhhh-hh-HHHhhhhhhhhhhHHHhhhccccccchhHHHH
Q 012500          243 QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFG-GV-TIVCGIVGTISGGFILDQMGATISNAFKLLSA  320 (462)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  320 (462)
                      |+|.++...+..++..........+.+.++.+..|.++....+. .. ..++.+++.++++++.||+++|     +.+..
T Consensus       207 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~-----~~l~~  281 (402)
T PRK11902        207 SRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLY-----RSLML  281 (402)
T ss_pred             hCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHH
Confidence            99988887776666555443333445556677778886655333 23 3345788999999999999987     55544


Q ss_pred             HHHHHHHHHH---HHHHh-hhhHHHHHHHHH----HHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccch
Q 012500          321 ATFLGAISCL---TAFCL-SSLYGFLALFTV----GELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  392 (462)
Q Consensus       321 ~~~~~~~~~~---~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  392 (462)
                      .........+   ..... ++.+.......+    .++..+.........+.+..|.+.+    +..+...+. +...++
T Consensus       282 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~  356 (402)
T PRK11902        282 FGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASV-GRVYVG  356 (402)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHH-HHHHHH
Confidence            4333332221   11222 233433333322    3333444455556666666665544    443323333 555455


Q ss_pred             hHHHHHHhhhcchhHHHHHHHHHHHHH
Q 012500          393 PLVGVLQDHVNNWRKTTLALTSIFFLA  419 (462)
Q Consensus       393 ~~~g~l~~~~g~~~~~~~~~~~~~~~~  419 (462)
                      .+.|.+.|..| +...+...+.+.+.+
T Consensus       357 ~~~G~l~~~~G-~~~~f~~~~~~~~~~  382 (402)
T PRK11902        357 PTSGYLVEAYG-WPGFYLMTVVIALPG  382 (402)
T ss_pred             HHHHHHHHHhC-hHHHHHHHHHHHHHH
Confidence            68999999987 666566655554443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.96  E-value=1.3e-32  Score=262.83  Aligned_cols=380  Identities=18%  Similarity=0.201  Sum_probs=247.1

Q ss_pred             chhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccc---hhHHHHHHHHHhhcccccccccccchh
Q 012500           35 SSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSF---DFWSIAICRMLVGVGEASFISLAAPFI  110 (462)
Q Consensus        35 ~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i  110 (462)
                      .++..+...+|..+++++.|.+ ||+|||+.+..+.++..+++++.++++   |++.+.++|+++|++.|...+....++
T Consensus        48 ~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~  127 (451)
T PF00083_consen   48 SSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYI  127 (451)
T ss_pred             HHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5679999999999999999999 999999999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhccc---chHHHHHHHHHHHHHHHHHHhhccccccCCCCCcccccc
Q 012500          111 DDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL---NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKA  187 (462)
Q Consensus       111 ~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~---gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  187 (462)
                      .|..|+++|++..++.+.+..+|..++..++..+.+..   +||+.+++..+++++..+.. ++.||+|++...+++.++
T Consensus       128 ~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pESP~wL~~~~~~~~  206 (451)
T PF00083_consen  128 SEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLR-FFLPESPRWLLSKGRDEE  206 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccceecccccccc
Confidence            99999999999999999999999999988876664433   49999999998887655544 566999998755544332


Q ss_pred             ccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhH-----HHHHHHHHHHHHHHHH
Q 012500          188 QVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKV-----YVVNVLGYIAYNFVIG  262 (462)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  262 (462)
                        .++..++.++.+..   +++.+++.++.++..+.+           .+++++++++.     .....+..+.......
T Consensus       207 --A~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~  270 (451)
T PF00083_consen  207 --AEKVLRKLRGKEIE---DEEIEEIKAEKKESQESK-----------ASWRDLFRNKKYRKRLLIALLLQFFQQFSGIN  270 (451)
T ss_pred             --cccccccccccccc---cccccccccccccccccc-----------eeeeeccccccccccccccccccccccccccc
Confidence              22222222222111   111111111111110000           12334444432     1111121122122233


Q ss_pred             HHHHHhhHHHHHHhCCCcchhhhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHH----H-hhh
Q 012500          263 AYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF----C-LSS  337 (462)
Q Consensus       263 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~  337 (462)
                      ....+.|.++++ .+.+.. ........+...++.+++.++.||+|||     +.++.+.....++.....    . .++
T Consensus       271 ~~~~~~~~i~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~GRr-----~~~i~~~~~~~~~~~~~~~~~~~~~~~  343 (451)
T PF00083_consen  271 FIFYYSPSIFEN-AGISNS-FLATLILGLVNFLGTLLAIFLIDRFGRR-----KLLIIGLLLMAICSLILGIIFFLGVSS  343 (451)
T ss_pred             cccccccccccc-cccccc-cccccccccccccccccccccccccccc-----ccccccccccccccccccccccccccc
Confidence            445566666555 344433 2233445566777888888999999999     666655555444433332    1 112


Q ss_pred             ----hHHHHHHHHHHHHHHHhccccce-eeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHH
Q 012500          338 ----LYGFLALFTVGELLVFATQAPVN-YVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLAL  412 (462)
Q Consensus       338 ----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~  412 (462)
                          ....++...+.....+.+..+.. .+..|.+|++.|+++.++.....+ ++++++|.+.+.+.+..+.+ ..+.+.
T Consensus       344 ~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~-i~~~i~~~~~~~~~~~~~~~-~~~~i~  421 (451)
T PF00083_consen  344 SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGR-IGGFIIPFLFPYLFNNLGGW-GVFLIF  421 (451)
T ss_pred             ccccccccceeeeecccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccc-ccchhh
Confidence                22233333333344443444444 566888888999999999965555 48888998888888776533 334444


Q ss_pred             HHHHHHHHHHHHHHHhhcc-ccccchhhhcc
Q 012500          413 TSIFFLAAGIWFVGIFLKS-IDKFNEDGENQ  442 (462)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  442 (462)
                      +.+.++..+  +...+.|| |++..+|.+++
T Consensus       422 ~~~~~i~~i--~~~~~lpET~g~~l~ei~~~  450 (451)
T PF00083_consen  422 AGVCLIAII--FVYFFLPETKGKTLEEIQEM  450 (451)
T ss_pred             HHHHHHHHh--heeEEEeeCCCCCHHHHHhh
Confidence            433333222  22346676 77777776653

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00901 2A0125 AmpG-related permease

Probab=99.96  E-value=3.9e-27  Score=217.84  Aligned_cols=316  Identities=13%  Similarity=0.071  Sum_probs=225.9

Q ss_pred             HHHHHHhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-ccc-----CCchh-HHHHHHHHHHHHHhhhcc
Q 012500           10 CLIGLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSH-----NPFRL-IGVGLSVWTFATAGCGSS   82 (462)
Q Consensus        10 ~~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~-----Grr~~-l~~~~~~~~~~~~~~~~~   82 (462)
                      ...+..+|.+.++   ++.|.++.+.  .... .+...+ .++.|.+ ||+     ||||. ++.+.++.++.....++.
T Consensus         5 ~~~~~~~~~~~~~---~g~s~~~~g~--~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~   77 (356)
T TIGR00901         5 GLVGNTLPYWLRS---KNVSLKTIGF--FSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL   77 (356)
T ss_pred             hhHHhHHHHHHHH---cCCCHHHHHH--HHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC
Confidence            3456678877776   6888888666  5433 333333 7777888 886     89996 567788888887777777


Q ss_pred             ---chhHHHHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccc--------hH
Q 012500           83 ---FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN--------WR  151 (462)
Q Consensus        83 ---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g--------wr  151 (462)
                         .+.+.+....++.+++.+...++..+++.|++|+|+|+++.++...+..+|.++++.+++.+.++.+        ||
T Consensus        78 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr  157 (356)
T TIGR00901        78 VPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWG  157 (356)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccH
Confidence               4666777788888998888899999999999999999999999999999999999999999988888        99


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhh
Q 012500          152 YAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQL  231 (462)
Q Consensus       152 ~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (462)
                      ..|++.++..++..+..++..||+.+.  ++++ + .                        +                 .
T Consensus       158 ~~f~i~ai~~l~~~~~~~~~~~e~~~~--~~~~-~-~------------------------~-----------------~  192 (356)
T TIGR00901       158 YIFFWTALLILPGLLVTLFLAKEPQED--ASVP-K-P------------------------L-----------------T  192 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCcc--cccc-h-h------------------------H-----------------H
Confidence            999999987776655555454542111  0000 0 0                        0                 0


Q ss_pred             hcchhhHHHHhhhhH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchhh-hhhh-HHHhhhhhhhhhhHHHhh
Q 012500          232 SQFSQDTKVLLQEKV---YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMM-FGGV-TIVCGIVGTISGGFILDQ  306 (462)
Q Consensus       232 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~g~l~d~  306 (462)
                      ++..++++++++++.   ++...+..++..........+.|.|+++ .|.++.+.. .... ..+..+++.++++++.||
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r  271 (356)
T TIGR00901       193 QAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQP  271 (356)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence            001224556667664   6666666666677777888899999988 777765553 2333 335678899999999999


Q ss_pred             hccccccchhHHHHHHHHHHHHHHHHHHh-----------hhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHH
Q 012500          307 MGATISNAFKLLSAATFLGAISCLTAFCL-----------SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALS  375 (462)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (462)
                      +++|     +.+....++...........           ++.+......++.+++.+...+...++..+..|+++|++.
T Consensus       272 ~g~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~  346 (356)
T TIGR00901       272 LNIL-----YALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQ  346 (356)
T ss_pred             hhHH-----HHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHH
Confidence            9987     55555554444433322221           2234455555666777788888899999999999999999


Q ss_pred             HHHHHHHH
Q 012500          376 MAISTVSI  383 (462)
Q Consensus       376 ~~~~~~~~  383 (462)
                      .|+.+...
T Consensus       347 ~g~~~~~~  354 (356)
T TIGR00901       347 MALLSSLS  354 (356)
T ss_pred             HHHHHHHH
Confidence            99986544

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.96  E-value=1.3e-26  Score=220.77  Aligned_cols=333  Identities=14%  Similarity=0.103  Sum_probs=234.9

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cc----cCCch-hHHHHHHHHHHHHHhhhccch-----
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CS----HNPFR-LIGVGLSVWTFATAGCGSSFD-----   84 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~-----   84 (462)
                      ++.+..+.  ++.++.+.+.  +.+...+...+..|+.|++ ||    +|||| .++.+....+++.+++.+.++     
T Consensus        22 l~~~~~~~--~g~s~~~~g~--i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~   97 (437)
T TIGR00792        22 LLFFYTDV--LGLSAAFVGT--LFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATG   97 (437)
T ss_pred             HHHHHHHc--cCCCHHHHHH--HHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcch
Confidence            34344443  6888888666  9999999999999999999 97    67755 677888888888888777654     


Q ss_pred             -hHHHHHHHHHhhcccccccccccchhcccC-CCCCchhHHHHHHhhhhhhhhhhhhHHHHhh-------cccchHHHHH
Q 012500           85 -FWSIAICRMLVGVGEASFISLAAPFIDDNA-PVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-------SHLNWRYAFW  155 (462)
Q Consensus        85 -~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-------~~~gwr~~f~  155 (462)
                       ...+++.+++.+++.+...+...++..|.. +++||++..++.+.+..+|..+++.+.+.+.       +..+||+.+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~  177 (437)
T TIGR00792        98 KLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFAL  177 (437)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHH
Confidence             456677888999988888888888889987 4689999999999988888877776655444       2468999999


Q ss_pred             HHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcch
Q 012500          156 GEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFS  235 (462)
Q Consensus       156 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (462)
                      +.++++++..+..++..||++++.  +++++..                                           .+..
T Consensus       178 i~~~l~~~~~~~~~~~~~e~~~~~--~~~~~~~-------------------------------------------~~~~  212 (437)
T TIGR00792       178 VLALIGVVSLIICFFGTKERYSEI--PKNIEKK-------------------------------------------LSLK  212 (437)
T ss_pred             HHHHHHHHHHHHHHcCCEecCCCC--CcccccC-------------------------------------------CCHH
Confidence            999888877776666666532110  0000000                                           0012


Q ss_pred             hhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchhhhhhhHHHhhhhhhhhhhHHHhhhccccccch
Q 012500          236 QDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAF  315 (462)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~  315 (462)
                      +.+++++++|.++...+..++..........+.+.|.+...+.+.....+.....++.+++.++.+++.||+++|     
T Consensus       213 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~-----  287 (437)
T TIGR00792       213 QIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK-----  287 (437)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----
Confidence            346778899998888777777766666665666666655554332222344556788899999999999999988     


Q ss_pred             hHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhccccceeeeeccCC-------cchhhHHHHHHHHHHhhhc
Q 012500          316 KLLSAATFLGAISCLTAFCL-SSLYGFLALFTVGELLVFATQAPVNYVCLHSVK-------PSLRALSMAISTVSIHIFG  387 (462)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g  387 (462)
                      +.+..+..+........... ++.+...+..++.+++.+...+...+...+..+       ++.+|.+.|+.+..... |
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~-g  366 (437)
T TIGR00792       288 ILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKL-G  366 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHH-H
Confidence            66655555544444333332 344445555566667766666666666666544       45689999999766665 9


Q ss_pred             cccchhHHHHHHhhhc
Q 012500          388 DVPSSPLVGVLQDHVN  403 (462)
Q Consensus       388 ~~~~~~~~g~l~~~~g  403 (462)
                      ..+++.+.|.+.+..|
T Consensus       367 ~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       367 QALAGFLVGLILGIIG  382 (437)
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            9999999999998765

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.96  E-value=2.4e-27  Score=214.11  Aligned_cols=356  Identities=10%  Similarity=0.043  Sum_probs=245.9

Q ss_pred             HHHHHHHHHHH----------hhhhhhhcccccccccc-ccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHH
Q 012500            5 IHVLLCLIGLI----------LKRSMKKKKFLSLRKLA-AGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVW   72 (462)
Q Consensus         5 i~~~~~~~~~~----------~p~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~   72 (462)
                      +..++|++|++          .|.+.+   ++++|+++ .+.  +.+.+..++++..++.|.+ ||+|.|+++..+.+.+
T Consensus        28 ~~~~lC~fGF~~e~R~n~s~a~p~L~~---elglT~~qv~G~--I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~W  102 (511)
T TIGR00806        28 LVLYLCFYGFMAQFRPGESFITPYLLT---VLNFTEETVTNE--IIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSF  102 (511)
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHH---HcCCCHHHhcch--HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            34558888887          453333   37888888 666  9999999999999999999 9999999999999999


Q ss_pred             HHHHHhhhccchhHHHHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHH
Q 012500           73 TFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRY  152 (462)
Q Consensus        73 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~  152 (462)
                      ++.+++.++++++..+.+.|++.|+++|+.. +...++..|+|+++|+++.++..++..+|.+++++++++ ...+|||+
T Consensus       103 sl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~  180 (511)
T TIGR00806       103 VCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWIS  180 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchh
Confidence            9999999999999999999999999999999 999999999999999999999999999999999999999 55679997


Q ss_pred             HHHHH--HHHHHHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhh
Q 012500          153 AFWGE--AILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQ  230 (462)
Q Consensus       153 ~f~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (462)
                      -+.+.  .+.+..+.+++-+++|...+..--.++++..  .....+.++....    +. .+.    .+..  +......
T Consensus       181 y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~--~~~~~~~~~~~~~----~~-~~~----~~~~--~~~~~~~  247 (511)
T TIGR00806       181 YSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVR--GALPCELDQMVPG----PG-GKL----EDYL--GTCRDSF  247 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccc--cccccccccCCCC----Cc-ccc----chhh--hhhhhHH
Confidence            66544  2333344444555556332211000000000  0000000000000    00 000    0000  0001123


Q ss_pred             hhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcc-hhhhhhhHHHhhhhhhhhhhHHHhhhcc
Q 012500          231 LSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA-DMMFGGVTIVCGIVGTISGGFILDQMGA  309 (462)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~  309 (462)
                      .+..+..++...+|+.+..-.+-+.+...+++-+.+|....-++....++. ....-++..+.+.+..+..|++-.++.+
T Consensus       248 ~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~  327 (511)
T TIGR00806       248 LVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWAR  327 (511)
T ss_pred             HHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchh
Confidence            345567788888999888888877777777777777777666554332221 1122244555666677888888655533


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHH
Q 012500          310 TISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSI  383 (462)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (462)
                      ..   ...+.+...+.+.+++++...++.|..++...++...+....+....-+......+.-|...|++++..
T Consensus       328 ~~---~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvA  398 (511)
T TIGR00806       328 WS---KLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVA  398 (511)
T ss_pred             hH---HHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHH
Confidence            21   033445555666667777777899999999999888888888877888888887777788888875443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=1.4e-26  Score=197.82  Aligned_cols=370  Identities=13%  Similarity=0.079  Sum_probs=250.9

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccc
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS  104 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~  104 (462)
                      ++.+..+.  +++......|..+++..+|.. |++|||+.+.+..+..++...+.+.++|+..+++.|.+.|+|.|+ .|
T Consensus       108 w~~s~~q~--~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~p  184 (528)
T KOG0253|consen  108 WGPSEGQA--PLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LP  184 (528)
T ss_pred             hchhhhhh--hHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-cc
Confidence            67777664  449999999999999999999 999999999999999999999999999999999999999999998 88


Q ss_pred             cccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCccc
Q 012500          105 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAES  184 (462)
Q Consensus       105 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  184 (462)
                      ...++-.|..|..+|...+-.. ..+.+|.++...++-.+..++||||.....+.+..+.+. ..+..||+++..-.+.+
T Consensus       185 v~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~-f~~w~~ESpRf~~~~G~  262 (528)
T KOG0253|consen  185 VDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAAR-FLVWVYESPRFYLAKGD  262 (528)
T ss_pred             HhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHH-HHhhcccCcchhhhcCC
Confidence            8889999999999999887777 899999999999999999999999999988865544444 45556898886543333


Q ss_pred             ccccccccccccccccccc---------------ccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHH-
Q 012500          185 GKAQVVASVSEGSEASNLN---------------DHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYV-  248 (462)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  248 (462)
                      +.+..+  ..+++.+.+..               ++...++.+......++             ...+...++.....+ 
T Consensus       263 ~~kAle--tL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke-------------~rg~~~nLlsp~lrkt  327 (528)
T KOG0253|consen  263 DYKALE--TLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKE-------------VRGGTTNLLSPKLRKT  327 (528)
T ss_pred             hHHHHH--HHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccc-------------cccchHhhcChHHHHH
Confidence            322111  01111111110               00000111111111111             111222222211111 


Q ss_pred             --HHHHHHHHHHHHHHHHHHHhh-----------------HHHHHHhC---CCcchhhhhhhHHHhhhhhhhhhhHHHhh
Q 012500          249 --VNVLGYIAYNFVIGAYSYWGP-----------------KAGYNIYH---MSNADMMFGGVTIVCGIVGTISGGFILDQ  306 (462)
Q Consensus       249 --~~~~~~~~~~~~~~~~~~~~p-----------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  306 (462)
                        .....++...+.+++......                 .+.+...+   .+...+.-..+..+..+.|.++.++++||
T Consensus       328 tlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iver  407 (528)
T KOG0253|consen  328 TLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVER  407 (528)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHH
Confidence              111112333333333333222                 22222111   11122222355678889999999999999


Q ss_pred             hccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhh
Q 012500          307 MGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIF  386 (462)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (462)
                      +|||     +.+....++..+..+......+.....+..+..-++..+.+...+.+..+.+|+..|+++.|.+..+.+ +
T Consensus       408 lGRK-----kTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaR-I  481 (528)
T KOG0253|consen  408 LGRK-----KTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMAR-I  481 (528)
T ss_pred             hcch-----hHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHh-h
Confidence            9999     889888888888888777776666667777777888888899999999999999999999999965545 5


Q ss_pred             ccccchhHHHHHHhhhcchhHHHHHHHHHHHHHHHHHH
Q 012500          387 GDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  424 (462)
Q Consensus       387 g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  424 (462)
                      |+++.|.+. ...+..  ...+..+...+.+.+.++..
T Consensus       482 ggI~~p~iA-~~~e~s--~sl~i~vy~~~~ilagIavc  516 (528)
T KOG0253|consen  482 GGIFSPVIA-MRAELS--TSLPIFVYGALFILAGIAVC  516 (528)
T ss_pred             hhhhhhHHH-HHhccc--eeehHHHHHHHHHHHHHHhe
Confidence            999999777 444432  22444455555555444443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.95  E-value=1.2e-27  Score=210.65  Aligned_cols=384  Identities=14%  Similarity=0.103  Sum_probs=250.6

Q ss_pred             hhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccc-------hhHHHHHHHHHhhccccccccccc
Q 012500           36 SVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSF-------DFWSIAICRMLVGVGEASFISLAA  107 (462)
Q Consensus        36 s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~g~~~~~~~  107 (462)
                      +.+..+-.+|.++++++.|++ ||+|||+++...++++.+++++++++.       -++++...|++.|+|.|+.+|...
T Consensus        87 ~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSA  166 (538)
T KOG0252|consen   87 ALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSA  166 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchH
Confidence            458899999999999999999 999999999999999999999888763       256789999999999999999999


Q ss_pred             chhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcc---------------cchHHHHHHHHHHHHHHHHHHhhcc
Q 012500          108 PFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH---------------LNWRYAFWGEAILMLPFAVLAFVIK  172 (462)
Q Consensus       108 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~---------------~gwr~~f~~~~~~~~~~~~~~~~~~  172 (462)
                      +..+|....++||...+...+..+.|...|.+++-.+..-               .-||..|.+..++++.+....+ .+
T Consensus       167 tI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl-~M  245 (538)
T KOG0252|consen  167 TIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRL-KM  245 (538)
T ss_pred             HHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhh-cC
Confidence            9999999999999999999999999998888877665421               1399999998887766544333 33


Q ss_pred             ccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHH
Q 012500          173 PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL  252 (462)
Q Consensus       173 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (462)
                      ||+.+.....+++.+...++..+..+.         +++++.......    ++..+..+.+.+-+.+. .-+.+...+.
T Consensus       246 ~Et~~Y~al~~~~~~~a~~d~~k~~~~---------~~~~~~~~~~~~----~~~~~~~~~F~~~f~~~-hg~~Llgt~~  311 (538)
T KOG0252|consen  246 PETARYTALVSKKLKQAAGDMKKVLSV---------DIEAESTAESDV----PPPSNSFGLFSRLFLRW-HGKHLLGTAG  311 (538)
T ss_pred             CcchhHHHHhhcCHhhhhhcccccccc---------ccchhhccccCC----CCcccccchHHHHHHHH-HHHHHHHHHH
Confidence            776655311111100000111111110         111111100000    00001111111111111 1234455566


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhCCCcchh---------hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHH
Q 012500          253 GYIAYNFVIGAYSYWGPKAGYNIYHMSNADM---------MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  323 (462)
Q Consensus       253 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  323 (462)
                      .++......+....+....+.+..-.+....         .-..+.....++|..+..+++|++||+     +..+.+..
T Consensus       312 ~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk-----~iq~~GF~  386 (538)
T KOG0252|consen  312 TWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRK-----YIQLMGFF  386 (538)
T ss_pred             HHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhH-----HHHHhhHH
Confidence            6788888888888877777775432221111         111333344466778888999999998     77777777


Q ss_pred             HHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHhccc-cceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHH
Q 012500          324 LGAISCLTAFCLSS----LYGFLALFTVGELLVFATQA-PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  398 (462)
Q Consensus       324 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l  398 (462)
                      +..+..+.+....+    ....+++..+..++...+.. ....+..+.+|.+.|++..|+. ...+-.|++++...+.++
T Consensus       387 ~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIs-AA~GK~GAivg~~~F~~~  465 (538)
T KOG0252|consen  387 IMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGIS-AASGKAGAIVGAFGFLYL  465 (538)
T ss_pred             HHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHH-HHhccchHHHHHHHhhHh
Confidence            77666665554333    23445555665555554444 4444555667779999999999 566767999999999999


Q ss_pred             Hh-----hhcchhHHHHHHHHHHHHHHHHHHHHHhhcc-ccccchhhhcccC
Q 012500          399 QD-----HVNNWRKTTLALTSIFFLAAGIWFVGIFLKS-IDKFNEDGENQIS  444 (462)
Q Consensus       399 ~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  444 (462)
                      .+     ..| ....+++...+.+.+.+..+   .+|| +++..++++++.+
T Consensus       466 t~~~yp~~~g-~~~v~~i~~~~~~~gi~~T~---l~pEtk~~~leei~~e~~  513 (538)
T KOG0252|consen  466 TDHNYPPNIG-VRNVFIILAGCMLLGILFTL---LIPETKGKSLEEISNEEE  513 (538)
T ss_pred             hhccCCcccc-chHHHHHHHHHHHHhHheeE---EeecccccCHHHhcChhh
Confidence            88     444 66777777777666665554   3344 6777766654433

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.95  E-value=1.5e-26  Score=198.90  Aligned_cols=341  Identities=12%  Similarity=-0.012  Sum_probs=217.2

Q ss_pred             hhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccccccchhcccC
Q 012500           36 SVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA  114 (462)
Q Consensus        36 s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~  114 (462)
                      +.+.+.|.+++++.++.+|.+ ||+|||+++..+++..++..++.++++|+..++++|++.|+..| ...+..++++|.+
T Consensus        71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~rAiisdV~  149 (451)
T KOG2615|consen   71 GFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIRAIISDVV  149 (451)
T ss_pred             hhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHHHHHhhc
Confidence            559999999999999999999 99999999999999999999999999999777778999999998 5556889999999


Q ss_pred             CCCCchhHHHHHHhhhhhhhhhhhhHHHHhhc---ccc---hHHHHHHHHHHHHHHHHHHhhccccccCCCCCccccccc
Q 012500          115 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS---HLN---WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQ  188 (462)
Q Consensus       115 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~---~~g---wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  188 (462)
                      ++|+|++.++.....+++|.++||.+|+++.+   ..|   .-.+-++..+..........++.||+.+.+++.++....
T Consensus       150 sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~~~~  229 (451)
T KOG2615|consen  150 SEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDEHSTL  229 (451)
T ss_pred             ChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchhhcccccch
Confidence            99999999999999999999999999999987   222   111122222222221223344558875543222110000


Q ss_pred             cccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhH-------HHHHHHHHHHHHHHH
Q 012500          189 VVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKV-------YVVNVLGYIAYNFVI  261 (462)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~  261 (462)
                               .+....+   .+..+..  ...                 .. ...||+.       ...+.+-.+.+...+
T Consensus       230 ---------~~~~~~~---~~~~~~~--~~~-----------------~v-~~lrn~p~~~~i~~~~i~~l~~~ly~~l~  277 (451)
T KOG2615|consen  230 ---------QEAADDR---LALLKFA--RIF-----------------KV-AALRNPPLLDFISVLRIFGLHYFLYLELF  277 (451)
T ss_pred             ---------hhhhhhh---hhhcchh--hhh-----------------hh-hhhcCccccchHHHHHHHHHHHHHHHHHH
Confidence                     0000000   0000000  000                 00 1122221       222333344555555


Q ss_pred             HHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHH
Q 012500          262 GAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYG  340 (462)
Q Consensus       262 ~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (462)
                      ....++.+.+.++.++.++.+. .+.+..++..   .++.+.+..+..+.+......+.....++....++.........
T Consensus       278 s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m---~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~  354 (451)
T KOG2615|consen  278 SGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLM---LVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVV  354 (451)
T ss_pred             HHHHhhHHHhhcCccCCChhhheeeeehhhHHH---HHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchh
Confidence            5555666656567777776554 2223333333   34444444444433211113344444444445555555555666


Q ss_pred             HHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHH
Q 012500          341 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALT  413 (462)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~  413 (462)
                      ......+..+......+.++.+.....|+++||+.+|+...... ++.++||.+.|.+..+..+-+.++....
T Consensus       355 l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~a-laRaiGPlv~g~i~~Ws~~~~~a~~~~~  426 (451)
T KOG2615|consen  355 LYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGA-LARAIGPLVSGVIFSWSQGAQPAYIAWG  426 (451)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHH-HHHHhhhhhhheeEEEecCCCceeeehH
Confidence            67777777777777888888899999999999999999964444 4999999988888766543333443333

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.95  E-value=5.5e-25  Score=209.34  Aligned_cols=393  Identities=12%  Similarity=0.025  Sum_probs=235.8

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cc-cCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CS-HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRM   93 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~   93 (462)
                      +|.++.++.+++.++.+.+.  ..+.+.++..+++++.|++ || +|||+++..+.++.+++.++.+++++++.++++|+
T Consensus        33 L~~yl~~~~~lg~s~~~ag~--~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~  110 (475)
T TIGR00924        33 LAVYLVQQAGLGFSQEQAFI--IFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLG  110 (475)
T ss_pred             HHHHHHhCCCCCCCHHHHHH--HHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence            67666554336777777665  9999999999999999999 99 89999999999999999999999999999999999


Q ss_pred             HhhcccccccccccchhcccCCCCC---chhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhh
Q 012500           94 LVGVGEASFISLAAPFIDDNAPVPQ---KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  170 (462)
Q Consensus        94 l~G~~~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  170 (462)
                      +.|+|.|...+...++++|++|+++   |++++++++.+.++|.++||.+++++.+++|||+.|++.++..++. ++.++
T Consensus       111 l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~-~l~~~  189 (475)
T TIGR00924       111 TIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIG-LLTFF  189 (475)
T ss_pred             HHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH-HHHHH
Confidence            9999999999999999999998754   8889999999999999999999999999999999999987654443 33333


Q ss_pred             ccccccCCCCCcccccccccccccccccccc---------ccccccccccchhhhhhhhccc-cccchhhhhcchhhHHH
Q 012500          171 IKPLQLKGFAPAESGKAQVVASVSEGSEASN---------LNDHVSEDISDQASERSIKSIG-ESRFLNQLSQFSQDTKV  240 (462)
Q Consensus       171 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  240 (462)
                      ..++..++.++  +++...+++.........         ....................-. .....+...+...+..+
T Consensus       190 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (475)
T TIGR00924       190 AGRHMLRDIGS--VPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVA  267 (475)
T ss_pred             HcccccccCCC--CCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence            33332221111  110000000000000000         0000000000000000000000 00000000000000001


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcc-----hhhhhhhHHHhhhhhhhhhhHHHhhhccccccch
Q 012500          241 LLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA-----DMMFGGVTIVCGIVGTISGGFILDQMGATISNAF  315 (462)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~  315 (462)
                      -.|...+..+.+...++...+....+.++.+.++..+.+..     ...+.++..+..++..++..++..|..||..+.+
T Consensus       268 ~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~  347 (475)
T TIGR00924       268 RNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPT  347 (475)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            11222333344444444555555556667666665433311     1133344444445555444444445554321111


Q ss_pred             hH--HHHHHHHHHHHHHHHHH---------hhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHh
Q 012500          316 KL--LSAATFLGAISCLTAFC---------LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIH  384 (462)
Q Consensus       316 ~~--~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (462)
                      ..  +..+.++..........         ..+.++.+....+.+++.....+.......+..|++.||+.+|+......
T Consensus       348 ~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~  427 (475)
T TIGR00924       348 TPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQA  427 (475)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            22  23444444433333321         24677778888888999999999999999999999999999999965555


Q ss_pred             hhccccchhHHHHHHhhhcchhHHHHHHHHH
Q 012500          385 IFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  415 (462)
Q Consensus       385 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  415 (462)
                      . |..+++.+.....+..+ +...+...+..
T Consensus       428 ~-g~~l~~~~~~~~~~~~~-~~~~~~~~~~~  456 (475)
T TIGR00924       428 M-GSLLGGYLATFGAVPQG-VTGVFGKIGLV  456 (475)
T ss_pred             H-HHHHHHHHHHHHhcccc-hhhHHHHHHHH
Confidence            4 88888877776655433 44444444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.94  E-value=5.3e-25  Score=189.02  Aligned_cols=337  Identities=14%  Similarity=0.045  Sum_probs=257.0

Q ss_pred             hhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhccc
Q 012500           21 KKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE   99 (462)
Q Consensus        21 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   99 (462)
                      +...++++|.+..+.  +.+...+...+.+|+..++ .|+|.++.+..++++.+++.++-... +.+.++.+-.+.|.|.
T Consensus        37 ~Ir~~~gls~s~aGl--LTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gI  113 (395)
T COG2807          37 EIRQDLGLSFSVAGL--LTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGI  113 (395)
T ss_pred             HHHHHhcccHHHHHH--HHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhH
Confidence            333448899888766  9999999999999999999 99999999999999999999999888 8888999999999999


Q ss_pred             ccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhccc-chHHHHHHHHHHHHHHHHHHhhccccccCC
Q 012500          100 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQLKG  178 (462)
Q Consensus       100 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~  178 (462)
                      +......+.++.+.|| |+-+..+|+|....++|..+++.++-.+.++. |||......++++++..+.++   |...++
T Consensus       114 av~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl---Pq~~r~  189 (395)
T COG2807         114 AVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL---PQALRE  189 (395)
T ss_pred             HHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh---hhcccc
Confidence            9999999999999999 88999999999999999999999999999887 799999999888776665544   442221


Q ss_pred             CCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHH
Q 012500          179 FAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN  258 (462)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (462)
                      +....+.+                                                ..+...++|+|.-|.+.+.+...+
T Consensus       190 ~~~~~~~~------------------------------------------------~~~~~~vw~~~~aW~vtLfmGlqS  221 (395)
T COG2807         190 QAASIATK------------------------------------------------LVSVRKVWRSPLAWQVTLFMGLQS  221 (395)
T ss_pred             cccccccc------------------------------------------------cccccccccCchhHHHHHHHHhhH
Confidence            10111100                                                011235789999999999999999


Q ss_pred             HHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhh
Q 012500          259 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS  337 (462)
Q Consensus       259 ~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (462)
                      ..++....|+|.++.|. |.+.+.. .+.+...+..++..+....+.+|...++    +.......+..+..+...+.+.
T Consensus       222 ~~~Y~~~~WLP~ili~~-G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r----~~~~~~~~~~l~G~~G~~~~P~  296 (395)
T COG2807         222 LLYYIVIGWLPAILIDR-GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQR----PLVVLALLLMLVGLVGLLLAPG  296 (395)
T ss_pred             HHHHHHHHHHHHHHHHc-CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc----hHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999985 5665544 5567888899999999999999854431    4444444444443333333332


Q ss_pred             hHHHHHHHHHHHHHHHhccccceeeeeccCCc-chhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHH
Q 012500          338 LYGFLALFTVGELLVFATQAPVNYVCLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIF  416 (462)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  416 (462)
                      ...... ..+.|++.+..++.....+.....+ +..+.-.|+.+...+. =...||.+.|++.|.+|+|....+..+.+.
T Consensus       297 ~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYl-lAa~GP~l~G~lhDa~gsw~~~~~~l~~~~  374 (395)
T COG2807         297 QLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYL-LAAFGPWLFGFLHDATGSWSAPLVLLALAT  374 (395)
T ss_pred             hHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHH-HHhhhhhhHhHHHHhcCChHHHHHHHHHHH
Confidence            211111 4667777777777666666665544 6667777777655555 456799999999999999988777666554


Q ss_pred             HHH
Q 012500          417 FLA  419 (462)
Q Consensus       417 ~~~  419 (462)
                      +..
T Consensus       375 i~m  377 (395)
T COG2807         375 LLM  377 (395)
T ss_pred             HHH
Confidence            433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.94  E-value=5.4e-25  Score=209.28  Aligned_cols=368  Identities=14%  Similarity=0.060  Sum_probs=223.3

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cc-cCCchhHHHHHHHHHHHHHhhhccchhHH-HHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CS-HNPFRLIGVGLSVWTFATAGCGSSFDFWS-IAICR   92 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-l~~~r   92 (462)
                      ++.+++++  ++.++.+..  ++.+.+.....+..++.|++ || +||||++..+.++++++++.++++++... ++++|
T Consensus        37 l~~yl~~~--lg~~~~~a~--~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~  112 (489)
T PRK10207         37 LAVFFVKQ--LGFSQEQAF--ITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIAL  112 (489)
T ss_pred             HHHHHHHH--cCCCHHHHH--HHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            55565554  667776644  48888888888888999999 99 99999999999999999999999887554 55899


Q ss_pred             HHhhcccccccccccchhcccCCCC--CchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhh
Q 012500           93 MLVGVGEASFISLAAPFIDDNAPVP--QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  170 (462)
Q Consensus        93 ~l~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  170 (462)
                      +++|+|.|...|...+++.|.+|++  +|+++++++..+.++|..+||.+++++.+++|||+.|++.++ +++..++.+.
T Consensus       113 ~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i-~~~~~~~~~~  191 (489)
T PRK10207        113 GTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA-GLIIALLVYF  191 (489)
T ss_pred             HHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHHH
Confidence            9999999999999999999999877  457899999999999999999999999999999999999755 4444444444


Q ss_pred             ccccccCCCCCcccccccccccccc----------ccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHH
Q 012500          171 IKPLQLKGFAPAESGKAQVVASVSE----------GSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKV  240 (462)
Q Consensus       171 ~~p~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (462)
                      ..++..++.+++.+++..+......          ......+..    ...........-.....-..++.     ...+
T Consensus       192 ~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~f~~~~~-----~~~~  262 (489)
T PRK10207        192 ACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNV----EVANLVLIVLSIVVTIIFFREAF-----KLDK  262 (489)
T ss_pred             HcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHh-----cCCH
Confidence            4443322211011000000000000          000000000    00000000000000000000000     0013


Q ss_pred             HhhhhHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHhCCCc-----chhhhhhhHHHhhhhhhhhhhHHHhhhcccccc
Q 012500          241 LLQEKVYVVNVLG--YIAYNFVIGAYSYWGPKAGYNIYHMSN-----ADMMFGGVTIVCGIVGTISGGFILDQMGATISN  313 (462)
Q Consensus       241 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~  313 (462)
                      .+|+|.+....+.  .......+....+.+|.+.++..+.+.     ....+..+..+..++..++.+++.||+++|...
T Consensus       263 ~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~  342 (489)
T PRK10207        263 TGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKD  342 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            4455554433322  233333344444666667664332221     111222333455556777788999999887321


Q ss_pred             c--hhHHHHHHHHHHHHHHHH-----HHh-----hhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHH
Q 012500          314 A--FKLLSAATFLGAISCLTA-----FCL-----SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTV  381 (462)
Q Consensus       314 ~--~~~~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (462)
                      .  ..-+..+.++.....+..     ...     .+.+..+...++.+.+.....++....+.+..|++.++.++|+.+.
T Consensus       343 ~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l  422 (489)
T PRK10207        343 LSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFL  422 (489)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            1  112233333333222211     111     2345566777888888889999989999999999999999999976


Q ss_pred             HHhhhccccchhHHHHH
Q 012500          382 SIHIFGDVPSSPLVGVL  398 (462)
Q Consensus       382 ~~~~~g~~~~~~~~g~l  398 (462)
                      ..+. |+.++..+....
T Consensus       423 ~~~i-g~~lg~~l~~~~  438 (489)
T PRK10207        423 TQAA-AFLLGGYVATFT  438 (489)
T ss_pred             HHHH-HHHHHHHHHHHh
Confidence            6555 777777665444

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.94  E-value=2.4e-25  Score=216.00  Aligned_cols=342  Identities=14%  Similarity=0.105  Sum_probs=226.8

Q ss_pred             hhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccccccchhcccC
Q 012500           36 SVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA  114 (462)
Q Consensus        36 s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~  114 (462)
                      .+..+.+.+|.++++.+.|.+ ||+|||++++.++++..++.++.++++|++.+++.|++.|++.+.....+..++.|++
T Consensus       121 ~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~  200 (521)
T KOG0255|consen  121 ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIV  200 (521)
T ss_pred             HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeec
Confidence            448899999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCccccccccccccc
Q 012500          115 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVS  194 (462)
Q Consensus       115 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  194 (462)
                      ++++|+.+.++ ......+..++++.++++.+  +||+.+++..+++++..+. +++.||++++...+.+.++..+.  .
T Consensus       201 ~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~~~~a~~~--l  274 (521)
T KOG0255|consen  201 SPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKGRIDEAIKI--L  274 (521)
T ss_pred             CcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcCchHHHHHH--H
Confidence            99999999999 77778888888888888887  7999999999988777666 66667888876544443222111  1


Q ss_pred             cccccccc-cccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 012500          195 EGSEASNL-NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY  273 (462)
Q Consensus       195 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  273 (462)
                      ++..+.++ ..+..+..+......+.+.        ...+....+..+++.|++....+...+..+.. ...++.-.+..
T Consensus       275 ~~~a~~n~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~-~~~y~gl~~~~  345 (521)
T KOG0255|consen  275 KKIAKLNGRKLSVKELLRLELLLRPLKL--------LFTEPKISFLDLFRTPRLRYRTLYLLFIWFVF-SLVYYGLSLNV  345 (521)
T ss_pred             HHHHhhcCCCCCcHHHHHHHHHhhHhhh--------hccCCCCchhhhhcCHHHHHHHHHHHHHHHHH-hHHHHhhhhhh
Confidence            11111000 0000000111100000000        00000123556667665444433333222222 22222222222


Q ss_pred             HHhCCCcchhhhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHH
Q 012500          274 NIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLY---GFLALFTVGEL  350 (462)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  350 (462)
                      ...+.+  ...................+...|++|||     ........+..+.++.........   .......+..+
T Consensus       346 ~~lg~~--~~~~~~~~~~~~~p~~~~~~~~~~~~gR~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (521)
T KOG0255|consen  346 SGLGGN--IYLNFTLSGLVELPAYFRNGLLLPEFGRR-----PPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKF  418 (521)
T ss_pred             hhcCch--HHHHHHHHHHHHhhHHHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence            223333  22222333446666777778999999988     666666666666555555443222   35555555666


Q ss_pred             HHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHh
Q 012500          351 LVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  400 (462)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~  400 (462)
                      +.+..+........+.+|+..|..+.+..+. .+.++.+++|.+.-....
T Consensus       419 ~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~-~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  419 FIGSAFNLIFLYSAELIPTVVRNTAVGAISA-AARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence            6666666778888889999999999999964 444488888866544433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.94  E-value=2e-24  Score=202.08  Aligned_cols=344  Identities=11%  Similarity=-0.057  Sum_probs=230.5

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhcc-c-cccCCchhHHHHHHH-HHHHHHhhh---ccch-hHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCS-Q-CSHNPFRLIGVGLSV-WTFATAGCG---SSFD-FWSI   88 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~-l-dr~Grr~~l~~~~~~-~~~~~~~~~---~~~~-~~~l   88 (462)
                      +|.++++   .+.+.++.|.-.......+...+.+|+.|+ . ||+||||..++.+.+ .++.....+   ..++ ...+
T Consensus        24 lp~~l~~---~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (390)
T TIGR02718        24 LPTLLRE---DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWA  100 (390)
T ss_pred             HHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHH
Confidence            5656665   688888877611246668888899999977 6 999999987555433 221122222   2322 3344


Q ss_pred             HHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHH
Q 012500           89 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLA  168 (462)
Q Consensus        89 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~  168 (462)
                      +..-++.++..+...+....+..|..++++++...+....+..+|.++|+...+++.+++|||..|++.+++.++..+..
T Consensus       101 ~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~  180 (390)
T TIGR02718       101 VGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCV  180 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            55556666777778888888999999988889999999999999999999999999999999999999998877666665


Q ss_pred             hhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHH
Q 012500          169 FVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYV  248 (462)
Q Consensus       169 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (462)
                      ++..|+++++   +++++.                                              ..++.++++|+|.++
T Consensus       181 ~~~~~~~~~~---~~~~~~----------------------------------------------~~~~~~~~l~~~~~~  211 (390)
T TIGR02718       181 LWLKDRAVAS---PEAPLA----------------------------------------------RRASLFRFFRRPLAW  211 (390)
T ss_pred             HHcCCCCcCc---cccchh----------------------------------------------hHHHHHHHHcCcCHH
Confidence            5554332110   000000                                              012356778888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchhhhh-hhHH-HhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHH
Q 012500          249 VNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFG-GVTI-VCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  326 (462)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  326 (462)
                      ......++..........+.+.|+++ .|.++...... .... ...+++.++.|++.||++++     +.+..+..+..
T Consensus       212 ~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~-----~~l~~~~~~~~  285 (390)
T TIGR02718       212 SLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW-----RTFILGVGLAG  285 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHH
Confidence            77777777777677777788888887 57886655333 3333 45677888999999999988     66655444332


Q ss_pred             HHHHHHHHh------hhhHHHHHHHHHHHHHHHhccccceeeeeccCCc-chhhHHHHHHHHHHhhhccccchhHHHHHH
Q 012500          327 ISCLTAFCL------SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQ  399 (462)
Q Consensus       327 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~  399 (462)
                      .........      ++....+....+.++..+...+.......+..++ +.+++..++.+...+. |..++|.+.|.+.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l-g~~~g~~~~G~l~  364 (390)
T TIGR02718       286 SLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDL-GELIASSIAGYLT  364 (390)
T ss_pred             HHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            222221111      1122222333333444555555666666666666 8899999999767666 9999999999999


Q ss_pred             hhhcchhHHHHHHHHHHHHH
Q 012500          400 DHVNNWRKTTLALTSIFFLA  419 (462)
Q Consensus       400 ~~~g~~~~~~~~~~~~~~~~  419 (462)
                      |..| +...+...+.+.+.+
T Consensus       365 ~~~G-~~~~f~~~~~~~l~a  383 (390)
T TIGR02718       365 DRFG-YAGGFLSGTVLAVLA  383 (390)
T ss_pred             HHHc-cHHHHHHHHHHHHHH
Confidence            9876 666666655544443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.93  E-value=1.3e-23  Score=197.98  Aligned_cols=358  Identities=11%  Similarity=0.047  Sum_probs=230.0

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccc
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS  104 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~  104 (462)
                      ++-++.   .+|+.+.+.++..+..|+.|++ |.||||++++.+.++..+|+++++.++|...++.+..+.|+|.|....
T Consensus        74 iG~~~~---~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~  150 (599)
T PF06609_consen   74 IGGSDN---WSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL  150 (599)
T ss_pred             cCCCcc---chHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH
Confidence            555433   4679999999999999999999 999999999999999999999999999999999999999999886664


Q ss_pred             cccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhc-cccccCCCCCcc
Q 012500          105 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI-KPLQLKGFAPAE  183 (462)
Q Consensus       105 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~  183 (462)
                       ....++|..|.|.|+...++.....-.....++.++..+..+.+|||.|++..+...+..++.+++ .|.+.+..+.++
T Consensus       151 -~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~  229 (599)
T PF06609_consen  151 -AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRK  229 (599)
T ss_pred             -HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhcccc
Confidence             566689999999999888877776666666788888877777799999999988876665554443 343221111111


Q ss_pred             cc-cccccc-ccc-------------ccccccc--ccccccccccch-hhh-------hhhhccccccchhhhhcchhhH
Q 012500          184 SG-KAQVVA-SVS-------------EGSEASN--LNDHVSEDISDQ-ASE-------RSIKSIGESRFLNQLSQFSQDT  238 (462)
Q Consensus       184 ~~-~~~~~~-~~~-------------~~~~~~~--~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~  238 (462)
                      .. ++..++ +..             -.++-..  ..++.....-.. .-.       .-.+..      ...++..-+ 
T Consensus       230 ~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~------~~~~~Pl~P-  302 (599)
T PF06609_consen  230 LSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWF------GAPKDPLFP-  302 (599)
T ss_pred             CcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhh------ccCCCCcCC-
Confidence            10 100000 000             0000000  000000000000 000       000000      000111122 


Q ss_pred             HHHhhh-hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcc---hh-hhhhhHHHhhhhhhhhhhHHHhhhcccccc
Q 012500          239 KVLLQE-KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA---DM-MFGGVTIVCGIVGTISGGFILDQMGATISN  313 (462)
Q Consensus       239 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~  313 (462)
                      .+++|+ |.+...++..++....++....+.|......++.++.   .. ........+..++.++.|.+..++++-+  
T Consensus       303 ~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~K--  380 (599)
T PF06609_consen  303 HRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIK--  380 (599)
T ss_pred             HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchh--
Confidence            357776 5565556666677777778778888888877776643   22 3445566777788888899988887541  


Q ss_pred             chhHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccc
Q 012500          314 AFKLLSAATFLGAISCLTA--FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPS  391 (462)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  391 (462)
                        +.++.+..+....+..+  ...++....+...++.+++.+....+......-..|++.-+++.|+. ...+.+|+.++
T Consensus       381 --w~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~-~s~R~~GGsIg  457 (599)
T PF06609_consen  381 --WQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLT-GSIRSIGGSIG  457 (599)
T ss_pred             --HHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHH-HHHHHHhhHHH
Confidence              33334443333322222  22334455567777788888877767777777778889999999999 45555588888


Q ss_pred             hhHHHHHH
Q 012500          392 SPLVGVLQ  399 (462)
Q Consensus       392 ~~~~g~l~  399 (462)
                      ..++..+.
T Consensus       458 ~aIy~~I~  465 (599)
T PF06609_consen  458 YAIYNAIF  465 (599)
T ss_pred             HHHHHHHH
Confidence            76665443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PTZ00207 hypothetical protein; Provisional

Probab=99.92  E-value=5.5e-24  Score=201.99  Aligned_cols=399  Identities=12%  Similarity=-0.024  Sum_probs=250.2

Q ss_pred             HhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhcc------chhHH
Q 012500           15 ILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSS------FDFWS   87 (462)
Q Consensus        15 ~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~   87 (462)
                      ..|.+.++   ++.++.+.+.  +.+.. ......++++|++ ||+|||+++.++.++++++.++++++      ++++.
T Consensus        49 ~s~~L~~~---lgls~~~l~~--i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~  122 (591)
T PTZ00207         49 ISGAMQAR---YNLTQRDLST--ITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVR  122 (591)
T ss_pred             HHHHHHHH---hCcCHHHHHH--HHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHH
Confidence            34544333   7788887555  55542 3334567788999 99999999999999999999999997      68999


Q ss_pred             HHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhh-hhhHHHHhhcccchHHHHHHHHHHHHHHHH
Q 012500           88 IAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL-GYVYGGVVGSHLNWRYAFWGEAILMLPFAV  166 (462)
Q Consensus        88 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~  166 (462)
                      +++.|++.|+|.+...+.....+.+|+| ++||++.|+...+.++|.++ +++..+++.  .+|+..|++.+++.++..+
T Consensus       123 l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~l  199 (591)
T PTZ00207        123 LSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGI  199 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999997 88999999999999999976 454455544  3699999999999888888


Q ss_pred             HHhhccccccCCC---CC---cccccccc---------c-----c---------------------c---cc-c------
Q 012500          167 LAFVIKPLQLKGF---AP---AESGKAQV---------V-----A---------------------S---VS-E------  195 (462)
Q Consensus       167 ~~~~~~p~~~~~~---~~---~~~~~~~~---------~-----~---------------------~---~~-~------  195 (462)
                      +.+.++++.+...   ++   +++++...         +     .                     +   .. .      
T Consensus       200 l~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~  279 (591)
T PTZ00207        200 LAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGF  279 (591)
T ss_pred             HHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            7777663332211   00   01111000         0     0                     0   00 0      


Q ss_pred             -------------------cccccccccccc----ccccchhhhhhhhcc-ccccchhhhhcchhhHHHHhhhhHHHHHH
Q 012500          196 -------------------GSEASNLNDHVS----EDISDQASERSIKSI-GESRFLNQLSQFSQDTKVLLQEKVYVVNV  251 (462)
Q Consensus       196 -------------------~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (462)
                                         ..+..+++++.+    +..+++.+...++.. ..............++++.+++..+|.+.
T Consensus       280 ~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~  359 (591)
T PTZ00207        280 AVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLL  359 (591)
T ss_pred             HHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHH
Confidence                               000000000000    000000000000000 00000001011122778888999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhCC-Ccc--hhhhhhhHHHhhhhhhhhhhHHHhhhccccc---cchhHHHHHHHHH
Q 012500          252 LGYIAYNFVIGAYSYWGPKAGYNIYHM-SNA--DMMFGGVTIVCGIVGTISGGFILDQMGATIS---NAFKLLSAATFLG  325 (462)
Q Consensus       252 ~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~---~~~~~~~~~~~~~  325 (462)
                      ...++.......+...+..+.+...|. ...  ...+.++.++.+.+|++..|++.....+|..   -.|........++
T Consensus       360 ~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~  439 (591)
T PTZ00207        360 WSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVC  439 (591)
T ss_pred             HHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHH
Confidence            988888777666667777777776344 222  2236688899999999999998833333321   1122222222223


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccc-hhHHHHHHhhhc-
Q 012500          326 AISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPS-SPLVGVLQDHVN-  403 (462)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~g~l~~~~g-  403 (462)
                      .+..+++....+....++..++.|++.|..++.....+.+.+. ++-|+-.-+.. ..+.+|+.+- -.+.|.++|+-. 
T Consensus       440 ~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~-~a~pigs~~~n~~l~G~~Yd~ea~  517 (591)
T PTZ00207        440 IITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCF-LGSVLSAIFLNRLLYGEWYTQQAD  517 (591)
T ss_pred             HHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHh-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333333333232567788888999999999988888888888 77787777763 3344355443 557788887642 


Q ss_pred             -----------chhHHHHHHHHHHHHHHHHHH
Q 012500          404 -----------NWRKTTLALTSIFFLAAGIWF  424 (462)
Q Consensus       404 -----------~~~~~~~~~~~~~~~~~~~~~  424 (462)
                                 =+..++++++++.+.+.++..
T Consensus       518 k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~  549 (591)
T PTZ00207        518 KLGQDVCTERVCVVMPLAFLLGLSFLAFITST  549 (591)
T ss_pred             hCCCCeeCCceeeHhHHHHHHHHHHHHHHHHh
Confidence                       145677777777666655443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.92  E-value=1.6e-22  Score=191.68  Aligned_cols=358  Identities=19%  Similarity=0.329  Sum_probs=268.4

Q ss_pred             hhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccc--------------
Q 012500           19 SMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSF--------------   83 (462)
Q Consensus        19 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~--------------   83 (462)
                      +...+..++++.++.|.  +.+.+-++..+...+..++ .|..|-+++-.|.++++++++++++-+              
T Consensus       120 IttiErRF~i~Ss~sG~--I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~  197 (735)
T KOG3626|consen  120 ITTIERRFKISSSQSGL--IASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIK  197 (735)
T ss_pred             hhhhhhhcCCCCCccee--EeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhh
Confidence            33556668888888666  9999999999999999999 999999999999999999999988641              


Q ss_pred             -----------------------------------h--hH-HHHHHHHHhhcccccccccccchhcccCCCCCchhHHHH
Q 012500           84 -----------------------------------D--FW-SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSM  125 (462)
Q Consensus        84 -----------------------------------~--~~-~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~  125 (462)
                                                         +  ++ .++++.++.|+|....++.+.+|+-|...+++-+..+|+
T Consensus       198 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi  277 (735)
T KOG3626|consen  198 QSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGI  277 (735)
T ss_pred             ccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHH
Confidence                                               0  22 567799999999999999999999999999999999999


Q ss_pred             HHhhhhhhhhhhhhHHHHhhccc-------------------chHHHHHHHHHHHHHHHHHHhhccccccCCCCCccccc
Q 012500          126 FYMCIPTGVALGYVYGGVVGSHL-------------------NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGK  186 (462)
Q Consensus       126 ~~~~~~~G~~~g~~~~~~l~~~~-------------------gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  186 (462)
                      ......+|.++|.++++++...+                   .|..-|++.+.+.+...+..+++ |+..+...++.+.+
T Consensus       278 ~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~f-Pk~lp~~~~~~~~~  356 (735)
T KOG3626|consen  278 LYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFF-PKELPKSQKRKRAR  356 (735)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhC-cccCccccccchhh
Confidence            99999999999999999877421                   27777888888777777766665 54433221110000


Q ss_pred             cccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 012500          187 AQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSY  266 (462)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (462)
                      ..         +          ..+++.+    ..+......+..+++.+..+++++||.+...+++..+....+.++.+
T Consensus       357 ~~---------~----------~~k~~~~----~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~t  413 (735)
T KOG3626|consen  357 DL---------H----------VLKTESG----GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYIT  413 (735)
T ss_pred             hh---------c----------ccccccc----cccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHH
Confidence            00         0          0000000    01111122245567788899999999999999999999999999999


Q ss_pred             HhhHHHHHHhCCCcchh--hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHH----------
Q 012500          267 WGPKAGYNIYHMSNADM--MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC----------  334 (462)
Q Consensus       267 ~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  334 (462)
                      |+|.|++++++.++..+  ....+...+..+|.+++|++.+|+..+.+...++.++..++........++          
T Consensus       414 FlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~~~~~aG  493 (735)
T KOG3626|consen  414 FLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCESSPVAG  493 (735)
T ss_pred             hhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCCCCcccc
Confidence            99999999999996555  333555566688999999999999776443334444444444444333222          


Q ss_pred             ---------------------------------------------------------------------hh---------
Q 012500          335 ---------------------------------------------------------------------LS---------  336 (462)
Q Consensus       335 ---------------------------------------------------------------------~~---------  336 (462)
                                                                                           .+         
T Consensus       494 ~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a  573 (735)
T KOG3626|consen  494 VTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKNGNGSA  573 (735)
T ss_pred             eecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccccccCCCcee
Confidence                                                                                 00         


Q ss_pred             -----------hhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhh
Q 012500          337 -----------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  402 (462)
Q Consensus       337 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~  402 (462)
                                 ....+++.+++..+..+....+...++.+.+++|+|..++|+..+..+.+|.+.+|+++|+++|..
T Consensus       574 ~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~t  650 (735)
T KOG3626|consen  574 KKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDTT  650 (735)
T ss_pred             ecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhhH
Confidence                       112344555555666667778889999999999999999999999999999999999999999986

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.91  E-value=1.3e-21  Score=183.54  Aligned_cols=346  Identities=15%  Similarity=0.117  Sum_probs=262.8

Q ss_pred             hhhHHHHHHHHHhhhhhhccc-cccCCchhHHH-HHHHHHHHHHhhhcc-c-hhHHHHHHHHHhhcccccccccccchhc
Q 012500           36 SVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGV-GLSVWTFATAGCGSS-F-DFWSIAICRMLVGVGEASFISLAAPFID  111 (462)
Q Consensus        36 s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~-~~~~~~~~~~~~~~~-~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~  111 (462)
                      ++..+...+-..+..|+.|.+ |+-|+||.++. ...+..+++....+. + +++...+.-++.-++.+.......+++.
T Consensus        73 ~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP  152 (477)
T PF11700_consen   73 LYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLP  152 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            456778888888999999999 99988886554 445555566666653 3 4444455555566677778888899999


Q ss_pred             ccCCCCCc--------------------------hhHHHHHHhhhhhhhhhhhhHHHHhhc--------ccchHHHHHHH
Q 012500          112 DNAPVPQK--------------------------TAWLSMFYMCIPTGVALGYVYGGVVGS--------HLNWRYAFWGE  157 (462)
Q Consensus       112 ~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~g~~~~~~l~~--------~~gwr~~f~~~  157 (462)
                      |..+++++                          ++..+.-.....+|.++.-.+.-.+..        ..+-|..+.+.
T Consensus       153 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~  232 (477)
T PF11700_consen  153 DLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIV  232 (477)
T ss_pred             hhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHH
Confidence            99998888                          899999888888888887776655431        12358999999


Q ss_pred             HHHHHHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhh
Q 012500          158 AILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQD  237 (462)
Q Consensus       158 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (462)
                      ++.-++..+..++..|+.++....++..+                                       .....+++..+.
T Consensus       233 a~ww~vfsiP~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~g~~~l~~t  273 (477)
T PF11700_consen  233 ALWWLVFSIPLFLWLPDRPGPRPLPSGSS---------------------------------------YLRFGFKRLWRT  273 (477)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCcchh---------------------------------------HHHHHHHHHHHH
Confidence            99888888888888877544211111111                                       011345566677


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchh
Q 012500          238 TKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFK  316 (462)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~  316 (462)
                      +|++.+.|.....+++++++.-+...+......|..+..+++..+. .+..+..+.+++|.++.|++.||+|.|..   +
T Consensus       274 ~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~---~  350 (477)
T PF11700_consen  274 FKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK---R  350 (477)
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh---H
Confidence            8888889999999999999999999999999999999999997776 45577889999999999999999998733   3


Q ss_pred             HHHHHHHHHHHHHHHHHH--------hhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhcc
Q 012500          317 LLSAATFLGAISCLTAFC--------LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGD  388 (462)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  388 (462)
                      .+.....+..+..+....        .++.+..++...+.|.+.+..++..-++..+..|+++.+.-.|++..... ..+
T Consensus       351 ~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk-~ss  429 (477)
T PF11700_consen  351 TLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGK-ASS  429 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHH-HHH
Confidence            333333333333333333        45777788888899999999999999999999999999999999965544 489


Q ss_pred             ccchhHHHHHHhhhcchhHHHHHHHHHHHHHHHHHH
Q 012500          389 VPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  424 (462)
Q Consensus       389 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  424 (462)
                      ++||.+.|.+.|.+|+.+.++....++.+++.+++.
T Consensus       430 ~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~  465 (477)
T PF11700_consen  430 WLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLF  465 (477)
T ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh
Confidence            999999999999999888888888877777666654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.91  E-value=8.6e-22  Score=188.55  Aligned_cols=146  Identities=16%  Similarity=0.115  Sum_probs=119.5

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cc-cCCchhHHHHHHHHHHHHHhhhccc-hhHHHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CS-HNPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICR   92 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr-~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r   92 (462)
                      +|.++.++  ++.++.+.+.  ..+.+........++.|++ || +|||+++..+.++.+++..++++++ +.+.++++|
T Consensus        44 l~~yl~~~--lg~s~~~a~~--~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~  119 (500)
T PRK09584         44 MAVYLVKQ--LGMSEADSIT--LFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGM  119 (500)
T ss_pred             HHHHHHHH--cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            56666554  6666666444  6666665555666789999 99 5999999999999999999998875 566777899


Q ss_pred             HHhhcccccccccccchhcccCCCCC--chhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHH
Q 012500           93 MLVGVGEASFISLAAPFIDDNAPVPQ--KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFA  165 (462)
Q Consensus        93 ~l~G~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~  165 (462)
                      +++|++.|...+...+++.|++|+++  |..++++++.+.++|..+||.+++++.+++|||+.|++.++..++..
T Consensus       120 ~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~  194 (500)
T PRK09584        120 ATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITV  194 (500)
T ss_pred             HHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998654  45688999999999999999999999999999999999876544433

>PRK09669 putative symporter YagG; Provisional

Probab=99.91  E-value=6.2e-22  Score=188.27  Aligned_cols=332  Identities=13%  Similarity=0.055  Sum_probs=216.5

Q ss_pred             HHhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cc----cCCc-hhHHHHHHHHHHHHHhhhccch---
Q 012500           14 LILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CS----HNPF-RLIGVGLSVWTFATAGCGSSFD---   84 (462)
Q Consensus        14 ~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~---   84 (462)
                      ..++.+..+.  ++++..+.+.  +.+...+...+..|+.|++ ||    +||| +.++.+.+..+++..+....++   
T Consensus        30 ~~l~~~~t~~--~gls~~~~g~--i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~  105 (444)
T PRK09669         30 LFLAYFYTDV--FGLSAAIMGT--MFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGA  105 (444)
T ss_pred             HHHHHHHHHh--cCCCHHHHHH--HHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCc
Confidence            3344455554  6788888666  9999999999999999999 98    7775 4566777777777765544443   


Q ss_pred             ---hHHHHHHHHHhhcccccccccccchhcccC-CCCCchhHHHHHHhhhhhhhhhhhhHHHHhhc-------ccchHHH
Q 012500           85 ---FWSIAICRMLVGVGEASFISLAAPFIDDNA-PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-------HLNWRYA  153 (462)
Q Consensus        85 ---~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-------~~gwr~~  153 (462)
                         ...+++..++.+.+.........++.+|+. +++||++..++...+..+|..+++.+...+..       ..+|+..
T Consensus       106 ~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~  185 (444)
T PRK09669        106 TGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYA  185 (444)
T ss_pred             chHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHH
Confidence               455666666777766667777788999988 46889998888888888888777765443322       3579999


Q ss_pred             HHHHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhc
Q 012500          154 FWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQ  233 (462)
Q Consensus       154 f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (462)
                      +.+.++++++..+..++..+|..+.    +++++                                            ++
T Consensus       186 ~~i~~ii~~v~~~~~~~~~~e~~~~----~~~~~--------------------------------------------~~  217 (444)
T PRK09669        186 MMVMGLLGVVLFFCCFFMTKERYTP----EVDNS--------------------------------------------SS  217 (444)
T ss_pred             HHHHHHHHHHHHHHHhCCeEEecCC----CCcCC--------------------------------------------CC
Confidence            9888888777666655554442111    00000                                            01


Q ss_pred             chhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchhhhhhhHHHhhhhhhhhhhHHHhhhcccccc
Q 012500          234 FSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISN  313 (462)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~  313 (462)
                      ..++++.+++|+.++...+..++............+.|.+...+.+.....+.....+..+++.++.+++.||+++|   
T Consensus       218 ~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~---  294 (444)
T PRK09669        218 VWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRV---  294 (444)
T ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH---
Confidence            12457788899998888776665555544444444434333333222222333445567778888999999999988   


Q ss_pred             chhHHHHHHHHHHHHHH-HHH-HhhhhHHHHHHHHHHHHHHHhccccceeeeeccCC-------cchhhHHHHHHHHHHh
Q 012500          314 AFKLLSAATFLGAISCL-TAF-CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVK-------PSLRALSMAISTVSIH  384 (462)
Q Consensus       314 ~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~  384 (462)
                        +....+......... ... ..++.+..++..++.+++.+...+...+++.|..+       .+..|...|..+....
T Consensus       295 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~k  372 (444)
T PRK09669        295 --RAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIK  372 (444)
T ss_pred             --HHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHH
Confidence              555544443332222 222 22345555666667777777777777777777664       2334566777755555


Q ss_pred             hhccccchhHHHHHHhhhc
Q 012500          385 IFGDVPSSPLVGVLQDHVN  403 (462)
Q Consensus       385 ~~g~~~~~~~~g~l~~~~g  403 (462)
                      . |..+++.+.|.+.+..|
T Consensus       373 l-g~alg~~i~g~ll~~~G  390 (444)
T PRK09669        373 L-GLAIGGAVVGWILAWVD  390 (444)
T ss_pred             H-HHHHHHHHHHHHHHHcC
Confidence            5 99999999999998765

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.90  E-value=1.8e-21  Score=179.26  Aligned_cols=341  Identities=17%  Similarity=0.097  Sum_probs=242.9

Q ss_pred             HHHHHHHHhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccC-CchhHHHHHHHHHHHHHhhhccchh
Q 012500            8 LLCLIGLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHN-PFRLIGVGLSVWTFATAGCGSSFDF   85 (462)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~G-rr~~l~~~~~~~~~~~~~~~~~~~~   85 (462)
                      ..+..|..+|.....-++.+.|..|.|.  +.+...+..++.++++|.+ ||++ +||.+.+..++.++........+++
T Consensus        14 ~f~~~G~~~p~~~~~L~~~G~s~~qIG~--l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f   91 (400)
T PF03825_consen   14 YFFAYGAFLPYLPLYLESRGFSGTQIGI--LLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSF   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            3455566655443333336899999777  9999999999999999999 9985 5777878888888877777888899


Q ss_pred             HHHHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhH-HHHhhcccc---hHHHHHHHHHHH
Q 012500           86 WSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVY-GGVVGSHLN---WRYAFWGEAILM  161 (462)
Q Consensus        86 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~-~~~l~~~~g---wr~~f~~~~~~~  161 (462)
                      +.+++.-++..+...+..|...++..+...  ++++-.|-.-...++|.+++... ++.+....+   ..+.+++.+..+
T Consensus        92 ~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  169 (400)
T PF03825_consen   92 WWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILS  169 (400)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHH
Confidence            998888888888888888888888888875  34455666666677777766543 233333222   234566665554


Q ss_pred             HHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHH
Q 012500          162 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL  241 (462)
Q Consensus       162 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (462)
                      ++..... +..|+.+++++.+++.++.                                             ...+..++
T Consensus       170 ~ll~~~~-l~lp~~~~~~~~~~~~~~~---------------------------------------------~~~~~~~l  203 (400)
T PF03825_consen  170 LLLAGFA-LFLPKTPPKRSAKESVKKL---------------------------------------------LGLDALKL  203 (400)
T ss_pred             HHHHHHH-HhCCCCccccccCCCcccc---------------------------------------------cchHHHHH
Confidence            4443333 3346544221111110000                                             01234578


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHH
Q 012500          242 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSA  320 (462)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  320 (462)
                      +|+|++....+..++..........+.+.|+++..+.+.... ...++..++.++.....+++.+|+|.+     +++..
T Consensus       204 lk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~-----~ll~~  278 (400)
T PF03825_consen  204 LKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIK-----WLLLL  278 (400)
T ss_pred             hcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHHHH
Confidence            999999988888888888888888999999999876553333 333566677788888899999999988     88888


Q ss_pred             HHHHHHHHHHHHHHh-hhhHHHHHHH----HHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHH
Q 012500          321 ATFLGAISCLTAFCL-SSLYGFLALF----TVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV  395 (462)
Q Consensus       321 ~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  395 (462)
                      +....++=..+.... ++.+..++..    .+.|..++..+.....++.+..|++.|+++.++++.....+|..+|..++
T Consensus       279 a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~ig  358 (400)
T PF03825_consen  279 ALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIG  358 (400)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHH
Confidence            887777766666555 4444433333    34788888888888889999999999999999998777777999999999


Q ss_pred             HHHHhhhc
Q 012500          396 GVLQDHVN  403 (462)
Q Consensus       396 g~l~~~~g  403 (462)
                      |++.|+.|
T Consensus       359 G~l~~~~g  366 (400)
T PF03825_consen  359 GWLYDAFG  366 (400)
T ss_pred             HHHHHHhc
Confidence            99999987

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.90  E-value=1.5e-21  Score=186.65  Aligned_cols=338  Identities=7%  Similarity=-0.053  Sum_probs=215.4

Q ss_pred             HHHhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-c----ccCC-chhHHHHHHHHHHHHHhhhccch--
Q 012500           13 GLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-C----SHNP-FRLIGVGLSVWTFATAGCGSSFD--   84 (462)
Q Consensus        13 ~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-d----r~Gr-r~~l~~~~~~~~~~~~~~~~~~~--   84 (462)
                      +..++.+..+.  ++++....+.  +....-+--.+..|+.|++ |    |+|| |+.++.+.+..+++..++-..++  
T Consensus        26 ~~~l~~yyt~v--~Gls~~~vg~--i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~  101 (473)
T PRK10429         26 YMYLMYYYTDV--VGLSVGLVGT--LFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFE  101 (473)
T ss_pred             HHHHHHHHHHh--cCCCHHHHHH--HHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCC
Confidence            33345455554  6788888666  8888999999999999999 9    6699 55677788887777655544331  


Q ss_pred             ----hHHHHHHHHHhhcccccccccccchhcccC-CCCCchhHHHHHHhhhhhhhhhhhhHHHHhh-------cccchHH
Q 012500           85 ----FWSIAICRMLVGVGEASFISLAAPFIDDNA-PVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-------SHLNWRY  152 (462)
Q Consensus        85 ----~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-------~~~gwr~  152 (462)
                          +..+++.-++.+++.....+...++..|.. +++||.+..++-....++|..+.+.+...+.       +..+|+.
T Consensus       102 ~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~  181 (473)
T PRK10429        102 GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQM  181 (473)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHH
Confidence                334555666778888888888889999998 5889999999877777777666555443321       1236888


Q ss_pred             HHHHHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhh
Q 012500          153 AFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLS  232 (462)
Q Consensus       153 ~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (462)
                      ...+.+++.++..+..++..||.++...  ++++..                                         +..
T Consensus       182 ~~~i~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~-----------------------------------------~~~  218 (473)
T PRK10429        182 FTLVLIAFFIVSTIITLRNVHEVYSSDN--QVSAEG-----------------------------------------SHL  218 (473)
T ss_pred             HHHHHHHHHHHHHHHHHcCceecCCccc--cccccc-----------------------------------------cCC
Confidence            8777777766666666555555321100  000000                                         000


Q ss_pred             cchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchhhhhhhHHHhhhhhhhhhhHHHhhhccccc
Q 012500          233 QFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATIS  312 (462)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~  312 (462)
                      +..+.++.+++||.++..+...++..........+.+.|.+...+.......+.....++.+++.++.+++.||+|+|  
T Consensus       219 ~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk--  296 (473)
T PRK10429        219 TLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRR--  296 (473)
T ss_pred             CHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH--
Confidence            112346667789888888777777776666666666655554433322222333445577788889999999999998  


Q ss_pred             cchhHHHHHHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHhccccceeeeeccCC-------cchhhHHHHHHH
Q 012500          313 NAFKLLSAATFLGAISCLTAFC-----LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVK-------PSLRALSMAIST  380 (462)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~  380 (462)
                         +.+..+..+..+..+....     .++.+..++...+.+++.+...+...+++.|..+       .+..|...|..+
T Consensus       297 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~  373 (473)
T PRK10429        297 ---ILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQT  373 (473)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHH
Confidence               6665444443332222211     2334444445555666666666666666666644       234556778875


Q ss_pred             HHHhhhccccchhHHHHHHhhhc
Q 012500          381 VSIHIFGDVPSSPLVGVLQDHVN  403 (462)
Q Consensus       381 ~~~~~~g~~~~~~~~g~l~~~~g  403 (462)
                      .... ++..+++.+.|++.+..|
T Consensus       374 ~~~K-~~~al~~~i~g~~l~~~G  395 (473)
T PRK10429        374 MVVK-GGSAFAAFFIGVVLGLIG  395 (473)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHcC
Confidence            4444 488999999999988765

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.90  E-value=1.2e-22  Score=167.69  Aligned_cols=362  Identities=11%  Similarity=0.009  Sum_probs=232.9

Q ss_pred             HHHHHHHHHHH------hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cc-cCCchhHHHHHHHHHHHH
Q 012500            5 IHVLLCLIGLI------LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CS-HNPFRLIGVGLSVWTFAT   76 (462)
Q Consensus         5 i~~~~~~~~~~------~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr-~Grr~~l~~~~~~~~~~~   76 (462)
                      ..++.|..|+-      .|..++.+...+.+-.....+++.+.|....++...+.|++ || +|-|..-++-+....++.
T Consensus        45 ~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~Gq  124 (459)
T KOG4686|consen   45 ALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQ  124 (459)
T ss_pred             HHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHH
Confidence            34455555543      46555555444433333334558899999999999999999 65 788887666666777777


Q ss_pred             Hhhh---ccchhHHHHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccch---
Q 012500           77 AGCG---SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW---  150 (462)
Q Consensus        77 ~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gw---  150 (462)
                      ++++   .++.+|++..+||+.|+|.-....+-..+...|+..||.+.++|+.....-+|..+-..+.+++.+..+=   
T Consensus       125 liFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~  204 (459)
T KOG4686|consen  125 LIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFP  204 (459)
T ss_pred             HHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcc
Confidence            7766   4689999999999999999988888999999999999999999999999999998887777777654320   


Q ss_pred             ---HHH---HHHHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhcccc
Q 012500          151 ---RYA---FWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGE  224 (462)
Q Consensus       151 ---r~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (462)
                         +..   ....+.......+......    ...  +++.+...        +             .++....+.+   
T Consensus       205 ~~ghT~LG~~l~~~~~tc~~slical~l----g~~--D~rAeril--------h-------------~e~g~~Ge~p---  254 (459)
T KOG4686|consen  205 GVGHTLLGLWLCFEVKTCKQSLICALSL----GLS--DDRAERIL--------H-------------LEEGFLGEEP---  254 (459)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHh----hhh--hhHHHHHH--------h-------------hhcCcccCCc---
Confidence               000   1111111111111111100    000  00000000        0             0000000000   


Q ss_pred             ccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHH
Q 012500          225 SRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFI  303 (462)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l  303 (462)
                           +    ..+.+.  -.|.+|.+.+...+++.....+....|.++++.+|+++.+. .+.+.....+.+.+++.|.+
T Consensus       255 -----k----Ltdv~~--f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i  323 (459)
T KOG4686|consen  255 -----K----LTDVNT--FYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAI  323 (459)
T ss_pred             -----c----cccccc--cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHh
Confidence                 0    011111  24778888888899999999999999999999999997666 44466666677788899999


Q ss_pred             HhhhccccccchhHHHHH-HHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHH
Q 012500          304 LDQMGATISNAFKLLSAA-TFLGAISCLTAFC-LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTV  381 (462)
Q Consensus       304 ~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (462)
                      +||.|++     .+.+.+ .+.....-..+.+ .-+++   ..+++.|.............+...+|+++.|++.|.++.
T Consensus       324 ~Dk~G~n-----~~wv~~a~~~tl~~H~~l~Ft~lsPy---~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qs  395 (459)
T KOG4686|consen  324 SDKYGFN-----LWWVASACILTLLGHSGLFFTFLSPY---TSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQS  395 (459)
T ss_pred             Hhhhcce-----ehhHHHHHHHHHHHhhhHHhhhccHH---HHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHH
Confidence            9999998     444333 3333333222222 12333   344444444443333344455666788999999999988


Q ss_pred             HHhhhccccchhHHHHHHhhhcchhHHHHHHHHHH
Q 012500          382 SIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIF  416 (462)
Q Consensus       382 ~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  416 (462)
                      ..+. |-++.|++.|.+.|.-|+|.+.-.++.++.
T Consensus       396 IqNL-gla~i~Iiag~i~d~~g~y~~le~ffl~~~  429 (459)
T KOG4686|consen  396 IQNL-GLAFIPIIAGFIADGDGSYDNLEAFFLIIG  429 (459)
T ss_pred             HHhh-hhhHHhhhhheeecCCCchhhHHHHHHHHH
Confidence            8887 999999999999998887665544444433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.89  E-value=1.1e-20  Score=178.93  Aligned_cols=332  Identities=16%  Similarity=0.115  Sum_probs=249.6

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-c----ccCCchh-HHHHHHHHHHHHHhhhcc-c-----
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-C----SHNPFRL-IGVGLSVWTFATAGCGSS-F-----   83 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-d----r~Grr~~-l~~~~~~~~~~~~~~~~~-~-----   83 (462)
                      ++.+..+.  .++++...+.  +.....+-.++..|+.|.+ |    |+||||. ++.|.+..+++..++... +     
T Consensus        24 ~~~f~~~~--~gl~~~~~g~--i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~   99 (428)
T PF13347_consen   24 LLYFYTDV--LGLSPALAGL--ILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSF   99 (428)
T ss_pred             HHHHHHHH--cCCCHHHHHH--HHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhh
Confidence            33344443  5778877555  8888888999999999999 9    8997775 567888888888777766 4     


Q ss_pred             --hhHHHHHHHHHhhcccccccccccchhcccCC-CCCchhHHHHHHhhhhhhhhhhhhHHHHhhcc-------cchHHH
Q 012500           84 --DFWSIAICRMLVGVGEASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------LNWRYA  153 (462)
Q Consensus        84 --~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-------~gwr~~  153 (462)
                        ....+.+.-++..++.........++..|..+ ++||.+..+.-+.+..+|..+...+.+.+.+.       .+|++.
T Consensus       100 ~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~  179 (428)
T PF13347_consen  100 TAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWM  179 (428)
T ss_pred             hhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHH
Confidence              23345777777799999899999999999997 57899999999999999887666666655432       169999


Q ss_pred             HHHHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhc
Q 012500          154 FWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQ  233 (462)
Q Consensus       154 f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (462)
                      .++.+++.++..++..+..+|..+..  +++++                                            ..+
T Consensus       180 ~~v~~iv~~v~~~i~~~~~ke~~~~~--~~~~~--------------------------------------------~~~  213 (428)
T PF13347_consen  180 ALVLAIVGLVFFLITFFFVKERSVEV--TEQEK--------------------------------------------KIS  213 (428)
T ss_pred             HHHHHHHHHHHhhhhhheeeeccccc--ccccc--------------------------------------------ccc
Confidence            99999988888888887776611111  00000                                            011


Q ss_pred             chhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchhhhhhhHHHhhhhhhhhhhHHHhhhcccccc
Q 012500          234 FSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISN  313 (462)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~  313 (462)
                      ..+.++.+++||.++......++............+.|.+...+.+.....+.....++.+++.++.++++||+|+|   
T Consensus       214 ~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~---  290 (428)
T PF13347_consen  214 LRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKK---  290 (428)
T ss_pred             cccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccce---
Confidence            13457788999999988888888888877777788888888877774444555677888899999999999999998   


Q ss_pred             chhHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhccccceeeeeccCCc-------chhhHHHHHHHHHHh
Q 012500          314 AFKLLSAATFLGAISCLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP-------SLRALSMAISTVSIH  384 (462)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~  384 (462)
                        +....+..+.+...+.....  ++.+..++...+.+++.+..+....++..|..+.       +..|...|+.+....
T Consensus       291 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k  368 (428)
T PF13347_consen  291 --KVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIK  368 (428)
T ss_pred             --eehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhH
Confidence              77766666666655555544  4778888888889999998888888888887763       345788888865555


Q ss_pred             hhccccchhHHHHHHhhhc
Q 012500          385 IFGDVPSSPLVGVLQDHVN  403 (462)
Q Consensus       385 ~~g~~~~~~~~g~l~~~~g  403 (462)
                      . +..+++.+.+.+.+..|
T Consensus       369 ~-~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  369 I-GQGLAGAIVGLLLALVG  386 (428)
T ss_pred             H-HHHHHHHHHHHHHHHhC
Confidence            5 88889989998887765

>TIGR01272 gluP glucose/galactose transporter

Probab=99.89  E-value=4.1e-21  Score=172.22  Aligned_cols=274  Identities=13%  Similarity=0.111  Sum_probs=198.3

Q ss_pred             hccchhHHHHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcc------------
Q 012500           80 GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH------------  147 (462)
Q Consensus        80 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~------------  147 (462)
                      +..++|+.++++-++.|.|.+...+..+.++++..|+|++++.+++.+...++|..++|.+++.+...            
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            34578999999999999999999999999999999999999999999999999999999999977731            


Q ss_pred             ----cchHHHHHHHHHHHHHHHHHHhhc-cccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhcc
Q 012500          148 ----LNWRYAFWGEAILMLPFAVLAFVI-KPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSI  222 (462)
Q Consensus       148 ----~gwr~~f~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (462)
                          ..||++|++.+.+..+..+...+. .||..+    +++++..                       ++   +.    
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~----~~~~~~~-----------------------~~---~~----  130 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE----ADVARVS-----------------------SG---DT----  130 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc----ccccccc-----------------------cc---cc----
Confidence                479999997777655555444333 233110    0000000                       00   00    


Q ss_pred             ccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--hCCCcchh-hhhhhHHHhhhhhhhh
Q 012500          223 GESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI--YHMSNADM-MFGGVTIVCGIVGTIS  299 (462)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~  299 (462)
                                   .+.++.+++|.++...+..+++.....+...|.+.|+.+.  ++.++... ...+....+.++|+++
T Consensus       131 -------------~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~  197 (310)
T TIGR01272       131 -------------TQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFI  197 (310)
T ss_pred             -------------cchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                         0012356678888877777787778889999999999864  57776555 4457788889999999


Q ss_pred             hhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHH
Q 012500          300 GGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS  379 (462)
Q Consensus       300 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (462)
                      ++++.||++++     +.+.....+......+....++. .......+.+++.+..+|...+...+..|++ .+++.++.
T Consensus       198 ~~~l~~r~g~~-----~~l~~~~~l~~~~~~l~~~~~~~-~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~  270 (310)
T TIGR01272       198 GSAVMPMISQG-----RYLAFNAFLAVLLSIGAALTHGY-VAMWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL  270 (310)
T ss_pred             HHHHHHHhCHH-----HHHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH
Confidence            99999999987     66655555544444333333332 2334555778888888998888888887654 45666665


Q ss_pred             HHHHhhhccccchhHHHHHHhhhcchhHHHH
Q 012500          380 TVSIHIFGDVPSSPLVGVLQDHVNNWRKTTL  410 (462)
Q Consensus       380 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  410 (462)
                       .. +.+|+++.|++.|.+.|..| .+.+++
T Consensus       271 -~~-~~~Gg~i~P~l~G~lad~~g-~~~a~~  298 (310)
T TIGR01272       271 -CL-AIVGGAIVPLLQGSLADCLG-IQLAFA  298 (310)
T ss_pred             -HH-HHhcchHHHHHHHHHHHhcc-chHHHH
Confidence             34 44599999999999999877 555555

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.88  E-value=1.6e-24  Score=206.00  Aligned_cols=362  Identities=20%  Similarity=0.352  Sum_probs=3.0

Q ss_pred             hhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccc----------------
Q 012500           21 KKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSF----------------   83 (462)
Q Consensus        21 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~----------------   83 (462)
                      ..++.++++.++.|.  +.+.+-++.++..++..++ +|..|-|++..|.++++++++++++-+                
T Consensus        28 tiErRF~l~S~~~G~--i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~  105 (539)
T PF03137_consen   28 TIERRFGLSSSQSGL--ISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNG  105 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhcCCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccc
Confidence            455568999999777  9999999999999999999 998899999999999999999987521                


Q ss_pred             ----------------------------------hhHHHHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhh
Q 012500           84 ----------------------------------DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMC  129 (462)
Q Consensus        84 ----------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~  129 (462)
                                                        -+..++++.++.|+|....++.+.+|+-|.+++++-+..+|+..+.
T Consensus       106 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~  185 (539)
T PF03137_consen  106 NSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAM  185 (539)
T ss_dssp             ----------------------------------------------SSS-------------------------------
T ss_pred             ccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHH
Confidence                                              0245788999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhHHHHhhccc----------------------chHHHHHHHHHHHHHHHHHHhhccccccCCCCCcccccc
Q 012500          130 IPTGVALGYVYGGVVGSHL----------------------NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKA  187 (462)
Q Consensus       130 ~~~G~~~g~~~~~~l~~~~----------------------gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  187 (462)
                      ..+|.++|..+++.+.+.+                      .|-.-|++.+++.++..+..+++ |+..+...+.++.++
T Consensus       186 ~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~F-Pk~lp~~~~~~~~~~  264 (539)
T PF03137_consen  186 SILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFF-PKKLPGTSERQEEKE  264 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcC-CccCCCcccccchhh
Confidence            9999999999998776421                      26666666676666665555544 554433211111000


Q ss_pred             ccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 012500          188 QVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYW  267 (462)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (462)
                      ..++                 +.++...+..++.+.........+++++..+++++||.+....++.........++.+|
T Consensus       265 ~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF  327 (539)
T PF03137_consen  265 SSER-----------------KEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATF  327 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhc-----------------chhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000                 00000000000001111223456777888999999999999999999999999999999


Q ss_pred             hhHHHHHHhCCCcchh--hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHH-----------
Q 012500          268 GPKAGYNIYHMSNADM--MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC-----------  334 (462)
Q Consensus       268 ~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  334 (462)
                      +|.|++.+++.++..+  ....+...++.+|.+++|++.+|++-+.+...++.....++..+.....+.           
T Consensus       328 ~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv  407 (539)
T PF03137_consen  328 LPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGV  407 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeee
Confidence            9999999999996554  333555567789999999999999766444334444333333332111111           


Q ss_pred             ---h-------------------------------------hhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhH
Q 012500          335 ---L-------------------------------------SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRAL  374 (462)
Q Consensus       335 ---~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (462)
                         .                                     ......++..++..+..+....+......+.+++++|+.
T Consensus       408 ~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~  487 (539)
T PF03137_consen  408 TVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSF  487 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcch
Confidence               0                                     011233444445555666777788888899999999999


Q ss_pred             HHHHHHHHHhhhccccchhHHHHHHhhh
Q 012500          375 SMAISTVSIHIFGDVPSSPLVGVLQDHV  402 (462)
Q Consensus       375 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~  402 (462)
                      |.|+.....+.+|.+.+|+++|.+.|..
T Consensus       488 AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  488 ALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             ----------------------------
T ss_pred             hhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            9999999999999999999999999964

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.88  E-value=5.1e-20  Score=171.61  Aligned_cols=363  Identities=13%  Similarity=0.016  Sum_probs=235.4

Q ss_pred             hhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-c----ccCCchhHHHH-HHHHHHHHHhhhccchhH----
Q 012500           17 KRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-C----SHNPFRLIGVG-LSVWTFATAGCGSSFDFW----   86 (462)
Q Consensus        17 p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-d----r~Grr~~l~~~-~~~~~~~~~~~~~~~~~~----   86 (462)
                      +.+.++   ++.++...+.  +.....+..++.+|+.|++ |    |+||||.++.+ .....++.++.+++++++    
T Consensus        28 ~~yl~~---lg~~~~~~~~--i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~  102 (477)
T TIGR01301        28 TPYVQE---LGIPHAWASI--IWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFG  102 (477)
T ss_pred             HHHHHH---cCCCHHHHHH--HHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhcc
Confidence            335444   7888877555  8889999999999999999 9    59999998774 666777777777776653    


Q ss_pred             -------------HHHHHHHHhhcccccccccccchhcccCCCCCc--hhHHHHHHhhhhhhhhhhhhHHHHh--hccc-
Q 012500           87 -------------SIAICRMLVGVGEASFISLAAPFIDDNAPVPQK--TAWLSMFYMCIPTGVALGYVYGGVV--GSHL-  148 (462)
Q Consensus        87 -------------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~~~~~l--~~~~-  148 (462)
                                   .++++-.+..++.....+...++++|.+|+++|  +.+.++.+...++|.++|+.++++.  .+.+ 
T Consensus       103 ~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~  182 (477)
T TIGR01301       103 DNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFP  182 (477)
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence                         223333344457777778889999999998865  6899999999999999999999875  2211 


Q ss_pred             ------------chHHHHHHHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhh
Q 012500          149 ------------NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASE  216 (462)
Q Consensus       149 ------------gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (462)
                                  +.|..|++.++..++..+...+..||.+...  +++.+..                    +.++.++.
T Consensus       183 ~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~~~~~~~--------------------~~~~~~~~  240 (477)
T TIGR01301       183 FTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG--SDDFINS--------------------EAAPPSKH  240 (477)
T ss_pred             cccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc--cccchhh--------------------hccccccc
Confidence                        5789999998888888888888777754321  0100000                    00000000


Q ss_pred             hhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHhCCCcc-------h---h-h
Q 012500          217 RSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY-NIYHMSNA-------D---M-M  284 (462)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~-------~---~-~  284 (462)
                        .       .....++..++++++  .+.++.+++..++..++.+.+..|.+.+.. +.++-++.       .   . .
T Consensus       241 --~-------~~~~~~~i~~~~~~m--P~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~  309 (477)
T TIGR01301       241 --G-------EEAFFGELFGAFKYL--PRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAF  309 (477)
T ss_pred             --c-------hhhhHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHH
Confidence              0       001122233334332  467888888888888888888888887765 45554321       1   1 1


Q ss_pred             hhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhh---------------------hHHHHH
Q 012500          285 FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS---------------------LYGFLA  343 (462)
Q Consensus       285 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~  343 (462)
                      ......+...+.+++..++.+|+|+|+    +....+.++.+.++....+.++                     .+..++
T Consensus       310 ~l~~~s~~~~i~s~~l~~l~~~~g~~k----~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  385 (477)
T TIGR01301       310 GLMLNSVVLGITSIGMEKLCRGWGAGK----RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALI  385 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccch----hHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHH
Confidence            113334444455566677778887531    4434554444444443332221                     356677


Q ss_pred             HHHHHHHHHHhccccceeeeeccCCc--chhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchh-HHHHHHHHHHHHHH
Q 012500          344 LFTVGELLVFATQAPVNYVCLHSVKP--SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWR-KTTLALTSIFFLAA  420 (462)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~-~~~~~~~~~~~~~~  420 (462)
                      .+.+.|+.....+..-++++.++.++  +..|..+|+.|.+... ..++.....|.+.+..|+.. ..+.+.++..+++.
T Consensus       386 ~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~l-pQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa  464 (477)
T TIGR01301       386 VFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVI-PQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSG  464 (477)
T ss_pred             HHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHH-HHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHH
Confidence            77778888887777778888888885  4569999999987776 88888888888777776433 33444444444444


Q ss_pred             HH
Q 012500          421 GI  422 (462)
Q Consensus       421 ~~  422 (462)
                      ++
T Consensus       465 ~~  466 (477)
T TIGR01301       465 LL  466 (477)
T ss_pred             HH
Confidence            33

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.88  E-value=6.9e-21  Score=167.68  Aligned_cols=365  Identities=12%  Similarity=0.046  Sum_probs=273.1

Q ss_pred             HHHhhhhhhhcccc---ccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhH-HHHHHHHHHHHHhhhccch--h
Q 012500           13 GLILKRSMKKKKFL---SLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLI-GVGLSVWTFATAGCGSSFD--F   85 (462)
Q Consensus        13 ~~~~p~~~~~~~~~---~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l-~~~~~~~~~~~~~~~~~~~--~   85 (462)
                      +++.|.+.++..+-   +..+.+.-++...+...+...+.+|..|.. |+.|+||.. .....+..++.....++++  +
T Consensus        35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~  114 (438)
T COG2270          35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSY  114 (438)
T ss_pred             eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCch
Confidence            34455555443221   333444445667888888888999999999 999987754 4555566666666666655  4


Q ss_pred             H-HHHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHH--HHh-h---------------c
Q 012500           86 W-SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYG--GVV-G---------------S  146 (462)
Q Consensus        86 ~-~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~--~~l-~---------------~  146 (462)
                      + ..++.-.+..++.......-.+++.+..++++-++..+.-.....+|+.+.-.+.  ... .               +
T Consensus       115 ~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~  194 (438)
T COG2270         115 LLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPAD  194 (438)
T ss_pred             HHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccc
Confidence            4 4455677888888889999999999999999988888887777777776655443  111 1               2


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhcccccc
Q 012500          147 HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESR  226 (462)
Q Consensus       147 ~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (462)
                      ...=|.++.+.++..++..+..++..|+.++.. .++.                                        +.
T Consensus       195 ~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~-~~~~----------------------------------------~~  233 (438)
T COG2270         195 GEDVRITGLLAALWWLLFALPMILNVHDAEKIS-SPPP----------------------------------------TA  233 (438)
T ss_pred             cccchhHHHHHHHHHHHHHhHHHhccccccccc-ccch----------------------------------------HH
Confidence            234688888888887777777776665432211 0000                                        11


Q ss_pred             chhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHh
Q 012500          227 FLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILD  305 (462)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d  305 (462)
                      ..+..++...++|++.+++.+...+++.+++.-+.++...+...|....+|++..+. .+.....+.+++|+++.|++.|
T Consensus       234 l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~  313 (438)
T COG2270         234 LRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDE  313 (438)
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            124556667788999999999999999999999999999999999999999998776 5557788999999999999999


Q ss_pred             hhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhh
Q 012500          306 QMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHI  385 (462)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (462)
                      |++.|     +.+..+..+....++...........+.+..+.+.+.+..+...-++..+.+|+++.++..|+++.....
T Consensus       314 rfg~k-----~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra  388 (438)
T COG2270         314 RFGSK-----PVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRA  388 (438)
T ss_pred             HhCCc-----eeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhH
Confidence            99998     7777777776666666666666666777778888999999999999999999999999999999655555


Q ss_pred             hccccchhHHHHHHhhhcchhHHHHHHHHHHHHHHHHHH
Q 012500          386 FGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  424 (462)
Q Consensus       386 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  424 (462)
                       ++.++|.+.+.+.+.+|+.+..+.....+..++..++.
T Consensus       389 -~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~  426 (438)
T COG2270         389 -ASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLL  426 (438)
T ss_pred             -HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEE
Confidence             99999999999999999887777776666555554443

>TIGR00788 fbt folate/biopterin transporter

Probab=99.88  E-value=1.9e-21  Score=184.57  Aligned_cols=373  Identities=13%  Similarity=-0.014  Sum_probs=231.5

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccC-----CchhHHHHHHHH-HHHHHhhhccchhHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHN-----PFRLIGVGLSVW-TFATAGCGSSFDFWSI   88 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~G-----rr~~l~~~~~~~-~~~~~~~~~~~~~~~l   88 (462)
                      ++.+++++  ++.+.++.+.  ..+...+...+ .+++|.+ ||++     ||+.++++.++. .+.....+..++....
T Consensus        48 ~~~~l~~~--lg~s~~~i~~--~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~  122 (468)
T TIGR00788        48 LSPMLTDD--LGLDGARYQR--LVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKV  122 (468)
T ss_pred             hhHHHHHh--cCCCHHHHHH--HHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHH
Confidence            33344443  6888888655  77777777776 4558999 9998     777788887776 3444444544554444


Q ss_pred             H-HHHHHhhcccccccccccchhcccCCCCCchhHH---HHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHH
Q 012500           89 A-ICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL---SMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPF  164 (462)
Q Consensus        89 ~-~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~---~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~  164 (462)
                      . +..++.+++.+...++..++..|..+ ++++...   +......++|.++|+.+++.+.+.++||..|++.+++.++.
T Consensus       123 ~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~  201 (468)
T TIGR00788       123 AAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQ  201 (468)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence            4 48899999999999999999999998 5554433   33344455899999999999999999999999998887766


Q ss_pred             HHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhh
Q 012500          165 AVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQE  244 (462)
Q Consensus       165 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (462)
                      .+ ..++.||++....++.+++..                 ...  ......          .....++..++.++.+++
T Consensus       202 ~~-~~~~~~E~~~~~~~~~~~~~~-----------------~~~--~~~~~~----------~~~~~~~~~~~l~~~l~~  251 (468)
T TIGR00788       202 LF-VSNLSKERRAFVRPRIGTYLE-----------------MNM--ALLTLG----------VLANVKVQILGLRGAIQL  251 (468)
T ss_pred             HH-HHHhcccccccccccccccch-----------------hhh--hhhhhh----------HHHHHHHHHHHHHHHHhc
Confidence            33 344446532110000000000                 000  000000          000011112345556778


Q ss_pred             hHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHhCCCcchhh-hhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHH
Q 012500          245 KVYVVNVLGYIA-YNFVIGAYSYWGPKAGYNIYHMSNADMM-FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  322 (462)
Q Consensus       245 ~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  322 (462)
                      |.++...+..++ +......... .-.+..+..|.++.... ......++.+++....+++.+|++.|     +.+..+.
T Consensus       252 ~~i~~~l~fifl~~~~~~~~~~~-~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r-----~~l~~~~  325 (468)
T TIGR00788       252 LEIAKPLIFIFLSYANLPGASGS-VFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYR-----LLFGVTT  325 (468)
T ss_pred             HHHHHHHHHHHHHHhhcCCCCce-eEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHH-----HHHHHHH
Confidence            887775554444 2221111111 00122344677766553 33556677888888888888888876     6666666


Q ss_pred             HHHHHHHHHHHH----------hhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccch
Q 012500          323 FLGAISCLTAFC----------LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  392 (462)
Q Consensus       323 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  392 (462)
                      ++.....+....          .++.+.......+.++..+....+...++.+..|++.+++..++.+...+. |..+++
T Consensus       326 ~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~l-g~~v~~  404 (468)
T TIGR00788       326 LLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHL-GSSVSG  404 (468)
T ss_pred             HHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHH-HHHHHH
Confidence            665554433210          022334445556677777888888899999999999999999999766665 999999


Q ss_pred             hHHHHHHhhhc----chhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012500          393 PLVGVLQDHVN----NWRKTTLALTSIFFLAAGIWFVGIFLKS  431 (462)
Q Consensus       393 ~~~g~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (462)
                      .++|.+.+..|    +++..+....++.+...+.......+|+
T Consensus       405 ~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP~  447 (468)
T TIGR00788       405 FLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHLLPR  447 (468)
T ss_pred             HHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999876    3444444444443333333333335565

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09848 glucuronide transporter; Provisional

Probab=99.86  E-value=9.9e-20  Score=173.50  Aligned_cols=329  Identities=10%  Similarity=0.004  Sum_probs=203.5

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-ccc----CCchh-HHHHHHHHHHHHHhh-h----ccch
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSH----NPFRL-IGVGLSVWTFATAGC-G----SSFD   84 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~----Grr~~-l~~~~~~~~~~~~~~-~----~~~~   84 (462)
                      ++.+.++.  ++++..+.|.  +.+...+...+..|+.|++ ||.    ||||. +..+.+...+...+. .    ++++
T Consensus        31 l~~y~~~~--~gl~~~~~g~--~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (448)
T PRK09848         31 LLSYYTDV--AGVGAAAAGT--MLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHS  106 (448)
T ss_pred             HHHHHHHH--cCCCHHHHHH--HHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcc
Confidence            34355554  5778888666  9999999999999999999 996    66764 455555444444332 1    1222


Q ss_pred             --hHHHHHHHHHhhcccccccccccchhcccCC-CCCchhHHHHHHhhh-----hhhhhhhhhHHHHhhccc--chHHHH
Q 012500           85 --FWSIAICRMLVGVGEASFISLAAPFIDDNAP-VPQKTAWLSMFYMCI-----PTGVALGYVYGGVVGSHL--NWRYAF  154 (462)
Q Consensus        85 --~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~-----~~G~~~g~~~~~~l~~~~--gwr~~f  154 (462)
                        ...+++.-++.+++.+...+...++..+..+ +++|.+..++-..+.     .+|..++|.++.......  +|....
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~  186 (448)
T PRK09848        107 SKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWT  186 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH
Confidence              2334445567788888888777777777664 467888777665433     345556666655432211  122222


Q ss_pred             HHHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcc
Q 012500          155 WGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQF  234 (462)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (462)
                      .+.++++++..+..+...||+.+.    ++++                                             .+.
T Consensus       187 ~~~~v~~~~~~~~~~~~~~e~~~~----~~~~---------------------------------------------~~~  217 (448)
T PRK09848        187 IVLAIAGMVLYFICFKSTRENVVR----IVAQ---------------------------------------------PSL  217 (448)
T ss_pred             HHHHHHHHHHHHHHHcCcEeccCC----CccC---------------------------------------------CCH
Confidence            233333333333333333432110    0000                                             011


Q ss_pred             hhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchhhhh-hhHHHhhhhhhhhhhHHHhhhcccccc
Q 012500          235 SQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFG-GVTIVCGIVGTISGGFILDQMGATISN  313 (462)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~~~~~~~  313 (462)
                      .+.++.+++||.++...+..++..........+.|.|+++..+.++....+. ....++.+++.++.+++.||+++|   
T Consensus       218 ~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~---  294 (448)
T PRK09848        218 KISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK---  294 (448)
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH---
Confidence            2357788999999888887777777777777778888888777665433332 223456677888999999999988   


Q ss_pred             chhHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhccccceeeeeccCCcc-------hhhHHHHHHHHHHh
Q 012500          314 AFKLLSAATFLGAISCLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS-------LRALSMAISTVSIH  384 (462)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~  384 (462)
                        +.+..+..+..+........  .+.+.......+.+++.+...+...+...+..+.+       .+|...|+.+....
T Consensus       295 --~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~k  372 (448)
T PRK09848        295 --NTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRK  372 (448)
T ss_pred             --HHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHH
Confidence              66666655544443333332  23444445555667777766666666766666543       45888889865555


Q ss_pred             hhccccchhHHHHHHhhhc
Q 012500          385 IFGDVPSSPLVGVLQDHVN  403 (462)
Q Consensus       385 ~~g~~~~~~~~g~l~~~~g  403 (462)
                      . |..+++.+.+.+.+..|
T Consensus       373 l-g~aig~~i~g~~l~~~G  390 (448)
T PRK09848        373 C-GQAIGGSIPAFILGLSG  390 (448)
T ss_pred             H-HHHHHHHHHHHHHHHcC
Confidence            5 99999999999887654

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.86  E-value=6.7e-20  Score=165.40  Aligned_cols=361  Identities=14%  Similarity=0.097  Sum_probs=238.3

Q ss_pred             HHHHHHHhh---hhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHH--HHHH-Hhhhc
Q 012500            9 LCLIGLILK---RSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVW--TFAT-AGCGS   81 (462)
Q Consensus         9 ~~~~~~~~p---~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~--~~~~-~~~~~   81 (462)
                      .+..+...|   ..+++.  .+++.++.|.  +.+...+..++.+|+.|.+ ||.|.||-++..+.+.  ..+. ....+
T Consensus        20 Ff~~gi~~pF~~iWL~~~--~GLs~~~iG~--i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~   95 (412)
T PF01306_consen   20 FFIWGIFLPFFPIWLTQV--AGLSGTEIGI--IFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVF   95 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHH--H---HHHHHH--HHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHccc--cCCCHHHHHH--HHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555544   344433  5889999777  9999999999999999999 9999888655443222  1122 22222


Q ss_pred             c----chhH-HHHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHH
Q 012500           82 S----FDFW-SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWG  156 (462)
Q Consensus        82 ~----~~~~-~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~  156 (462)
                      .    .|.+ ..+++-...|+......|+..+++.++.  ++.+.=.|-.-...++|.+++..++|.+.+. +-+..||+
T Consensus        96 ~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i-~p~~~fwi  172 (412)
T PF01306_consen   96 GPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI-NPNIIFWI  172 (412)
T ss_dssp             HHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee-CccHHHHH
Confidence            2    2322 2333334445555555666666666664  3445567777888899999999999998863 55778888


Q ss_pred             HHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchh
Q 012500          157 EAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQ  236 (462)
Q Consensus       157 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (462)
                      ....+++..++.++..|+.++.....+..+..                                         +.+...+
T Consensus       173 ~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~  211 (412)
T PF01306_consen  173 ASAAAIILLLLLLLLKPDVPPQAEVADALGAK-----------------------------------------KDKVSLK  211 (412)
T ss_dssp             HHHHHHHHHHHHHSS---SSSSS-SSTTSSS-----------------------------------------------HH
T ss_pred             HHHHHHHHHHHHHHcCCcCchhhhhhcccccC-----------------------------------------CCCCcHH
Confidence            77766666665555555432221111110000                                         0000024


Q ss_pred             hHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcch---h-hhhhhHHHhhhhhhhhhhHHHhhhccccc
Q 012500          237 DTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD---M-MFGGVTIVCGIVGTISGGFILDQMGATIS  312 (462)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~  312 (462)
                      +..+++|+|++|...+........+..+....|.|....+.....+   . .+.+...+..++...+..++.+|+|.|  
T Consensus       212 ~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k--  289 (412)
T PF01306_consen  212 DVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAK--  289 (412)
T ss_dssp             HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH--
Confidence            5678899999999888766666667777766777777655433211   2 223556667788888999999999999  


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccch
Q 012500          313 NAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  392 (462)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  392 (462)
                         +.++.+..+..+=.......++++.....-.+.++-.........-++.+.+|++..++...+.......+|.++.+
T Consensus       290 ---~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s  366 (412)
T PF01306_consen  290 ---NLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILS  366 (412)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHH
T ss_pred             ---hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHh
Confidence               88888888888888888888888888888899998888888888999999999999888888864444445888889


Q ss_pred             hHHHHHHhhhcchhHHHHHHHHHHHHHHHHH
Q 012500          393 PLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  423 (462)
Q Consensus       393 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  423 (462)
                      .+.|.++|+.| ++..+++++.+.++..++.
T Consensus       367 ~~~G~lyd~~G-~~~tylimg~iv~~~~li~  396 (412)
T PF01306_consen  367 PLAGYLYDRIG-FQHTYLIMGLIVLPFTLIS  396 (412)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHhhHhhcC-cHHHHHHHHHHHHHHHHHh
Confidence            99999999997 6667777776655444433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK11462 putative transporter; Provisional

Probab=99.86  E-value=3.5e-19  Score=169.11  Aligned_cols=329  Identities=12%  Similarity=0.012  Sum_probs=198.6

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cc----cCCch-hHHHHHHHHHHHHHhhhccch-----
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CS----HNPFR-LIGVGLSVWTFATAGCGSSFD-----   84 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~-----   84 (462)
                      ++.+..+.  .++++...+.  +....-+--.+.-|+.|++ ||    +|||| .++++.+..+++..++-..++     
T Consensus        32 l~~fyt~~--~Gl~~~~~g~--i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~  107 (460)
T PRK11462         32 MMFFYTDI--FGIPAGFVGT--MFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNG  107 (460)
T ss_pred             HHHHHHHh--hCCCHHHHHH--HHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcch
Confidence            44344443  6777777555  7788777788999999999 85    78876 456677777777766554442     


Q ss_pred             -hHHHHHHHHHhhcccccccccccchhcccCC-CCCchhHHHHHHhhhhhhhhhhhhHHHHhhcc-------cchHHHHH
Q 012500           85 -FWSIAICRMLVGVGEASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------LNWRYAFW  155 (462)
Q Consensus        85 -~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-------~gwr~~f~  155 (462)
                       ...+++.-++..++.......-.++..|..+ ++||++..++...+..+|..+++.+...+.+.       .+|+....
T Consensus       108 ~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~  187 (460)
T PRK11462        108 KMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIA  187 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHH
Confidence             3445556666788888888888889999887 78999999999999999888887775544432       36888888


Q ss_pred             HHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcch
Q 012500          156 GEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFS  235 (462)
Q Consensus       156 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (462)
                      +.+++.+++..+.+...+|..+.    ++++ .                                            +..
T Consensus       188 i~~ii~~i~~~i~~~~~kE~~~~----~~~~-~--------------------------------------------~~~  218 (460)
T PRK11462        188 VLSVVAFMMLAFCFFTTKERVEA----PPTT-T--------------------------------------------SMR  218 (460)
T ss_pred             HHHHHHHHHHHHHHhcceeccCC----CccC-C--------------------------------------------CHH
Confidence            87777666665555544442111    0000 0                                            012


Q ss_pred             hhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchhhhhhhHHHhhhhhhhhhhHHHhhhccccccch
Q 012500          236 QDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAF  315 (462)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~  315 (462)
                      +.++..++|+.++......++..............|.....+.......+.....++.+++.++++++.||+++|     
T Consensus       219 ~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk-----  293 (460)
T PRK11462        219 EDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKV-----  293 (460)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-----
Confidence            346778888888777655555544444433333434443344332222344556677888999999999999987     


Q ss_pred             hHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhccccceeeeeccCC-----cchh--hHHHHHHHHHHhhh
Q 012500          316 KLLSAATFLGAISCLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHSVK-----PSLR--ALSMAISTVSIHIF  386 (462)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~  386 (462)
                      +...................  .+.....+..++.+++.+...+...++..|..+     +..|  |...+..+.... +
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~K-l  372 (460)
T PRK11462        294 TIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLK-L  372 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHH-H
Confidence            54432222222211222222  222233333444455444433333344444433     1133  444455534444 4


Q ss_pred             ccccchhHHHHHHhhhc
Q 012500          387 GDVPSSPLVGVLQDHVN  403 (462)
Q Consensus       387 g~~~~~~~~g~l~~~~g  403 (462)
                      |..+++.+.|.+.+..|
T Consensus       373 g~alg~~i~g~iL~~~G  389 (460)
T PRK11462        373 GLAFGGALIGWMLAYGG  389 (460)
T ss_pred             HHHHHHHHHHHHHHHcC
Confidence            88899989998887654

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.86  E-value=1e-18  Score=163.61  Aligned_cols=153  Identities=12%  Similarity=0.069  Sum_probs=121.6

Q ss_pred             HHhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-ccc-CCchhHHHHHHHHHHHHHhhhccc-hhHHHHH
Q 012500           14 LILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSH-NPFRLIGVGLSVWTFATAGCGSSF-DFWSIAI   90 (462)
Q Consensus        14 ~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~   90 (462)
                      ..+|.++.++  ++.++.+.+.  +.+.+.....++.++.|++ ||+ ||||++..+.++..++.++.+..+ +...+++
T Consensus        30 ~~L~~yL~~~--lgls~~~a~~--i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l  105 (493)
T PRK15462         30 ALLILYLTNQ--LKYDDNHAYE--LFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYL  105 (493)
T ss_pred             HHHHHHHHHh--cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence            3477777665  6777777555  8888889989999999999 999 999999999999999988776543 2233444


Q ss_pred             HHHHhhcccccccccccchhcccCCCC--CchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHH
Q 012500           91 CRMLVGVGEASFISLAAPFIDDNAPVP--QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLA  168 (462)
Q Consensus        91 ~r~l~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~  168 (462)
                      +..+.++|.|...+...++++|.+|++  +|..++++...+.++|..++|.+.+++.+++|||+.|.+.++. .+..++.
T Consensus       106 ~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaig-m~l~li~  184 (493)
T PRK15462        106 SLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVG-MIAGLVI  184 (493)
T ss_pred             HHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHH-HHHHHHH
Confidence            444555667777787889999999875  6999999999999999999999999999999999999987664 3444444


Q ss_pred             hhc
Q 012500          169 FVI  171 (462)
Q Consensus       169 ~~~  171 (462)
                      ++.
T Consensus       185 ~~~  187 (493)
T PRK15462        185 FLC  187 (493)
T ss_pred             HHH
Confidence            433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.81  E-value=5.5e-17  Score=148.06  Aligned_cols=340  Identities=11%  Similarity=0.018  Sum_probs=237.9

Q ss_pred             HHHHHHhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cc----cCCch-hHHHHHHHHHHHHHhhhccc
Q 012500           10 CLIGLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CS----HNPFR-LIGVGLSVWTFATAGCGSSF   83 (462)
Q Consensus        10 ~~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr----~Grr~-~l~~~~~~~~~~~~~~~~~~   83 (462)
                      +..+..+..+..+.  .++++...|.  +...-=+--++.-|+.|.+ ||    +||+| .++.+.+..++.+.++-.++
T Consensus        29 ~~~~~yLl~fYTdv--~Gis~~~aG~--iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p  104 (467)
T COG2211          29 GIVVLYLLFFYTDV--FGLSAALAGT--IFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITP  104 (467)
T ss_pred             HHHHHHHHHHHhcc--cCCcHHHHHH--HHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCC
Confidence            33444455555554  5677777555  6666666677888888888 85    67666 57778888888888888776


Q ss_pred             h------hHHHHHHHHHhhcccccccccccchhcccCC-CCCchhHHHHHHhhhhhhhhhhhhHHHHhhc-------ccc
Q 012500           84 D------FWSIAICRMLVGVGEASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-------HLN  149 (462)
Q Consensus        84 ~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-------~~g  149 (462)
                      +      ....++.-.+.+++.......-.++.+|+.+ ++||.+..++-+.+.++|..+...+...+..       ..|
T Consensus       105 ~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g  184 (467)
T COG2211         105 DFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALG  184 (467)
T ss_pred             CcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhh
Confidence            3      4455667788889999888888899999885 6899999999999999997776655544432       458


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchh
Q 012500          150 WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLN  229 (462)
Q Consensus       150 wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (462)
                      |+..-.+.++++.+..+.+++-..|...+..+.++.                                            
T Consensus       185 ~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~--------------------------------------------  220 (467)
T COG2211         185 YQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTG--------------------------------------------  220 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccCccccCccc--------------------------------------------
Confidence            999999999988888888887766543321111100                                            


Q ss_pred             hhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchhhhh-hhHHHhhhhhhhhhhHHHhhhc
Q 012500          230 QLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFG-GVTIVCGIVGTISGGFILDQMG  308 (462)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~~  308 (462)
                      ..++..+++..+++|+.+...++...+.....+........|.+...+.++...... .....+.+++.++..++.+|+|
T Consensus       221 ~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~g  300 (467)
T COG2211         221 VKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFG  300 (467)
T ss_pred             ccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence            001112346678899999998887777777777777777777776666664444333 4444555666889999999999


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhccccceeeeeccCCc-------chhhHHHHHH
Q 012500          309 ATISNAFKLLSAATFLGAISCLTAFCLS--SLYGFLALFTVGELLVFATQAPVNYVCLHSVKP-------SLRALSMAIS  379 (462)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  379 (462)
                      +|     +....+.++.++......+.+  +....++..++.+++.+...+...+++++..+-       +..|...|..
T Consensus       301 kk-----~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~  375 (467)
T COG2211         301 KK-----KLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGM  375 (467)
T ss_pred             hH-----HHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHH
Confidence            99     888777777777666665554  455555555777777777776666666664432       3446677776


Q ss_pred             HHHHhhhccccchhHHHHHHhhhc
Q 012500          380 TVSIHIFGDVPSSPLVGVLQDHVN  403 (462)
Q Consensus       380 ~~~~~~~g~~~~~~~~g~l~~~~g  403 (462)
                      . +..-+|.+++..+.|++.+..|
T Consensus       376 t-F~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         376 T-FFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHcC
Confidence            4 4455588999989999988776

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.79  E-value=1.1e-17  Score=148.46  Aligned_cols=320  Identities=14%  Similarity=0.103  Sum_probs=217.9

Q ss_pred             hhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccc------hhH--HHHHHHHHhhcccccccccc
Q 012500           36 SVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSF------DFW--SIAICRMLVGVGEASFISLA  106 (462)
Q Consensus        36 s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~------~~~--~l~~~r~l~G~~~g~~~~~~  106 (462)
                      -|....|++.++..+.++-|+ ||+|-|...+++..+.++|+.+-..+.      .++  ....+..+.+.++-.....-
T Consensus        82 ~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lP  161 (480)
T KOG2563|consen   82 DWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLP  161 (480)
T ss_pred             HHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccc
Confidence            358899999999999999999 999999999999999999999877653      344  66788899998888777766


Q ss_pred             cchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhccc------chHH--HHHHHHHHHHHHHHHHhhccccccCC
Q 012500          107 APFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL------NWRY--AFWGEAILMLPFAVLAFVIKPLQLKG  178 (462)
Q Consensus       107 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~------gwr~--~f~~~~~~~~~~~~~~~~~~p~~~~~  178 (462)
                      ..+..-||+++||..+..+-..+..+|.++|.++...+..+-      .|-.  .|+..++++.+..++..+..++.|+.
T Consensus       162 skiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~t  241 (480)
T KOG2563|consen  162 SKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPT  241 (480)
T ss_pred             cHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            777888999999999999999999999999998888777543      4654  35545544444444444443332221


Q ss_pred             CCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHH
Q 012500          179 FAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN  258 (462)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (462)
                      .  ++.....                                        ....++.++.++.++++++....+.+....
T Consensus       242 P--ps~s~~~----------------------------------------~~~~~f~~si~~~~~n~~F~il~~~ygi~~  279 (480)
T KOG2563|consen  242 P--PSASQAA----------------------------------------LQDASFPKSIKSCFKNRQFIILAICYGIGL  279 (480)
T ss_pred             C--CchhHhh----------------------------------------hhcCcHHHHHHHHHcCccHHHHHHHHhhhH
Confidence            1  1110000                                        000123567889999999999888777776


Q ss_pred             HHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHH---
Q 012500          259 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC---  334 (462)
Q Consensus       259 ~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  334 (462)
                      ..+++..+.+-..+... +.+.... ....+..+++++++++.|.+.||.++-+    ..............+....   
T Consensus       280 g~F~~l~~~l~~~l~~s-gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk----~~~~v~~~~~~v~~~~l~~~t~  354 (480)
T KOG2563|consen  280 GLFNSLSTLLNLALCPS-GYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFK----LTTLVLYLFALVGTLMLLTCTL  354 (480)
T ss_pred             HHHHHHHHHhhhccccc-cCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHH----HHHHHHHHHHHHHHHHHHHhhc
Confidence            66666666555333332 2332222 4456778888999999999999987642    2222222222222111111   


Q ss_pred             -hhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhc
Q 012500          335 -LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  403 (462)
Q Consensus       335 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g  403 (462)
                       ....+.......+.|++.....|.-.-+..|...|..-++..|+.+...+.++ ++-.++.+...+..+
T Consensus       355 ~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~-~~~~~~~~~~~~~~~  423 (480)
T KOG2563|consen  355 FLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFG-VILVFIMGILAEDLG  423 (480)
T ss_pred             cCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHH-HHHHHHHHHHhhccC
Confidence             12344455566667777778888888888998888777888888876666644 344556666666554

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.69  E-value=1.2e-14  Score=131.73  Aligned_cols=367  Identities=11%  Similarity=0.094  Sum_probs=205.6

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cc-cCCchhHHHHHHHHHHHHHhhhccc--hhHHHHHHHHHhhccccc
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CS-HNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEAS  101 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr-~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~  101 (462)
                      ++.++++...  +.+.|.--.-....+.|++ || .|+|+.+..|.++..+|-++.+.++  +...++++-.+.++|.|.
T Consensus        56 Lg~~~~~A~~--l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl  133 (498)
T COG3104          56 LGFDETHATG--LFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGL  133 (498)
T ss_pred             CCcChHhhHH--HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccc
Confidence            4577776544  5566655555677778888 88 6999999999999999999999985  788999999999999999


Q ss_pred             ccccccchhcccCCCC--CchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccccCCC
Q 012500          102 FISLAAPFIDDNAPVP--QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF  179 (462)
Q Consensus       102 ~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~  179 (462)
                      .-+...++++|.+|++  +|-..++++.++.++|+.++|.+.+++.+++||+..|...++-.....+. +...++.....
T Consensus       134 ~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~-f~~~~r~~~~~  212 (498)
T COG3104         134 FKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVI-FLLGRRHVKGI  212 (498)
T ss_pred             ccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH-HHHccchhcCC
Confidence            9999999999999854  47778999999999999999999999999999999999988765544443 43334333222


Q ss_pred             CCccccccccccccccccccccc---cccccccccchhhhhhhh-ccccccc---h--hhhhcchhhHHHHhh-hhHHHH
Q 012500          180 APAESGKAQVVASVSEGSEASNL---NDHVSEDISDQASERSIK-SIGESRF---L--NQLSQFSQDTKVLLQ-EKVYVV  249 (462)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~---~--~~~~~~~~~~~~~~~-~~~~~~  249 (462)
                      ..++++.....+.........-.   ..........+....... .......   .  .++++..+..++++. -+.+..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~  292 (498)
T COG3104         213 GGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLF  292 (498)
T ss_pred             CCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHH
Confidence            21121111111000000000000   000000000000000000 0000000   0  000000001111110 011111


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHH-hCCCcchhhhhhhHHHhhhhhhhhhhHHHhhhcccccc--chhHHHHHHHHHH
Q 012500          250 NVLGYIAYNFVIGAYSYWGPKAGYNI-YHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISN--AFKLLSAATFLGA  326 (462)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~--~~~~~~~~~~~~~  326 (462)
                      ..+.+.++......+..+.....++. +|.+-....+-++..+.-++..++..++..|.+++.+.  ...-+..+..++.
T Consensus       293 ~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g  372 (498)
T COG3104         293 AVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAG  372 (498)
T ss_pred             HHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHH
Confidence            11222222222333333333333333 23332233444555566666676777777775444222  1122223333333


Q ss_pred             HHHHHHHHh----------hhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHH
Q 012500          327 ISCLTAFCL----------SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVG  396 (462)
Q Consensus       327 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g  396 (462)
                      ...+.....          .+.++.+....+..++--+..+...+.+.+..|+...+..+++. ...+..|..++..+.+
T Consensus       373 ~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~w-fLt~a~~~~l~g~va~  451 (498)
T COG3104         373 LGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMW-FLTVAAGQTLGGQVAG  451 (498)
T ss_pred             HHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHH-HHHHHHHHHhhceecc
Confidence            322222221          14566677777788888788888899999999999999998887 4444446555554444

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.67  E-value=1.1e-16  Score=126.90  Aligned_cols=137  Identities=27%  Similarity=0.321  Sum_probs=125.1

Q ss_pred             hHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccccccchhcccCCC
Q 012500           38 NVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPV  116 (462)
Q Consensus        38 ~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~  116 (462)
                      ..+.+.++..+++++.|++ ||+|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+....++.|.+|+
T Consensus         3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   82 (141)
T TIGR00880         3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP   82 (141)
T ss_pred             EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence            4566778889999999999 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhcccc
Q 012500          117 PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  174 (462)
Q Consensus       117 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  174 (462)
                      ++|++.+++.+....+|..+++.+++.+.+..+|++.|++.++..++..+..++..||
T Consensus        83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        83 EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999999999999999999999999988877777766666554

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.66  E-value=3.7e-15  Score=138.59  Aligned_cols=318  Identities=11%  Similarity=0.051  Sum_probs=217.5

Q ss_pred             HHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccc--cccccccchhcccCCCC
Q 012500           41 EFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA--SFISLAAPFIDDNAPVP  117 (462)
Q Consensus        41 ~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g--~~~~~~~~~i~~~~~~~  117 (462)
                      ...+..++.++..|.+ ||+|||..+....+...+..+...+..  |++++   +.|+..+  .......++++|....+
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~  144 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEE  144 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchh
Confidence            4467888999999999 999999999999999888888877776  33333   5554333  46677888999999999


Q ss_pred             CchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCcc-ccccccccccccc
Q 012500          118 QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAE-SGKAQVVASVSEG  196 (462)
Q Consensus       118 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~  196 (462)
                      +|....++.......+..++|.+++.+.+..|.-.+|++..+..+...+...+.+||+..+..+++ ..+....      
T Consensus       145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~------  218 (463)
T KOG2816|consen  145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTP------  218 (463)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCC------
Confidence            999999999999999999999999999999999999999999998888888888898765543321 0000000      


Q ss_pred             cccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHH
Q 012500          197 SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIG-AYSYWGPKAGYNI  275 (462)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~  275 (462)
                         .       +. ..                ....+..+..+..-.+|..+.+.+..+....... ...-..+.|+...
T Consensus       219 ---~-------~~-~~----------------~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~  271 (463)
T KOG2816|consen  219 ---G-------SL-DS----------------SHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAK  271 (463)
T ss_pred             ---C-------cc-cc----------------hhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeee
Confidence               0       00 00                0000001111121123334443433333333322 2221446788888


Q ss_pred             hCCCcchhh-hhhhHHHhhhhhhhhhh-HHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 012500          276 YHMSNADMM-FGGVTIVCGIVGTISGG-FILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVF  353 (462)
Q Consensus       276 ~~~~~~~~~-~~~~~~~~~~~~~~~~g-~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (462)
                      +++++.... +.+.......++.++.. .+...++.+     +.+..+...-........+..+.|..+....+ .....
T Consensus       272 f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~-----~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~-~~~~~  345 (463)
T KOG2816|consen  272 FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEK-----RLISLGLLSEFLQLLLFAFATETWMMFAAGVV-VALAG  345 (463)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hHhhHHHHHHHHHHHHHHHhccchhhhHHHHH-HHhhc
Confidence            999977663 55666667777776665 677778877     65555555555555555556666655444443 34444


Q ss_pred             hccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhc
Q 012500          354 ATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  403 (462)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g  403 (462)
                      ...+...+.......++++|++.++...... +...++|.+.+.+...+.
T Consensus       346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~-l~~~~~~~~~~~i~~~t~  394 (463)
T KOG2816|consen  346 IVFPAIRAFASILVSPEEQGKVFGIISGIEG-LSGVVSPALYGNIFALTL  394 (463)
T ss_pred             chhHHHHhHHHhhcccccccchhhHHHHHHH-HhhhhhHHHHHHHHHHHH
Confidence            5667778888888999999999999965544 488899999988876653

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.66  E-value=1.6e-13  Score=122.08  Aligned_cols=314  Identities=14%  Similarity=0.052  Sum_probs=210.4

Q ss_pred             hHHHHHHHHHhhhhhhccc-cccC-----CchhH-HHHHHHHHHHHHhhhcc-----c-------hh--H--HHHHHHHH
Q 012500           38 NVLEFTVTQLVCSSHHCSQ-CSHN-----PFRLI-GVGLSVWTFATAGCGSS-----F-------DF--W--SIAICRML   94 (462)
Q Consensus        38 ~~~~~~~~~~~~~~~~g~l-dr~G-----rr~~l-~~~~~~~~~~~~~~~~~-----~-------~~--~--~l~~~r~l   94 (462)
                      ......+.+ ...+..|+. |+.+     ||..+ ..|.++...+..+.+++     .       +.  +  ...+.-.+
T Consensus        20 lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l   98 (403)
T PF03209_consen   20 LVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLL   98 (403)
T ss_pred             HHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHH
Confidence            444444433 468899999 9998     77654 55666666665555542     2       12  2  23456678


Q ss_pred             hhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHH---HHHHHHHHHHHHHHHHhhc
Q 012500           95 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRY---AFWGEAILMLPFAVLAFVI  171 (462)
Q Consensus        95 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~---~f~~~~~~~~~~~~~~~~~  171 (462)
                      .|+|.+...+...++++|..|+|+|+++.++.....-+|.+++..+.+.+.+.+.-.-   ++...+++.+...++..+-
T Consensus        99 ~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~wg  178 (403)
T PF03209_consen   99 YGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNLIALWG  178 (403)
T ss_pred             HHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8999999999999999999999999999999999999999999999998887665222   2222222222222222222


Q ss_pred             cccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHH
Q 012500          172 KPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNV  251 (462)
Q Consensus       172 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (462)
                       .|.+.....+.++                                           ++..++.+.++++..+|+.....
T Consensus       179 -~E~r~~~~~~~~~-------------------------------------------~~~~~f~~a~~~~~~~~~a~~f~  214 (403)
T PF03209_consen  179 -QEPRRSRRAAAAE-------------------------------------------RPRPPFREAWRQVWASPQARRFF  214 (403)
T ss_pred             -cccCCcccccCCC-------------------------------------------CCCccHHHHHHHHHhCCChhHHH
Confidence             2211111010000                                           00011234566777888888887


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhh-hccccccchhHHHHHHHHHHHH-
Q 012500          252 LGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAFKLLSAATFLGAIS-  328 (462)
Q Consensus       252 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~-  328 (462)
                      ...+.....++.-...+-.|--+.++++..+. .+......+..+|....|++..| .+++     +....++..+..+ 
T Consensus       215 ~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~-----~~a~~G~~~~~~~f  289 (403)
T PF03209_consen  215 VFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKK-----RTAALGCLLGALAF  289 (403)
T ss_pred             HHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch-----HHHHHHHHHHHHHH
Confidence            77777777776667777778899999997655 66677788888999899987764 3333     3333333333333 


Q ss_pred             --HHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhh
Q 012500          329 --CLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  402 (462)
Q Consensus       329 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~  402 (462)
                        .......++.+......+++|++.+.......+.+.+...++..|..+|.-...+.. +..++..+.|.+.|..
T Consensus       290 ~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~-A~Glg~~~GG~~~D~~  364 (403)
T PF03209_consen  290 ALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAI-ARGLGTFLGGALRDLV  364 (403)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence              233334456778888888899999887777788888888888899999998544444 7778888888887764

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.57  E-value=1.2e-13  Score=126.70  Aligned_cols=353  Identities=12%  Similarity=0.132  Sum_probs=207.4

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCC-chhHHHHHHHHHHHHHhh-hc---cc-hhHHHHHHHHHhhcc
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNP-FRLIGVGLSVWTFATAGC-GS---SF-DFWSIAICRMLVGVG   98 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Gr-r~~l~~~~~~~~~~~~~~-~~---~~-~~~~l~~~r~l~G~~   98 (462)
                      ++.+.+..-.|++.++..++.++++|..|.. .|.+. |+.++.+.++..++.++. ++   .+ ..+.++++|++.|+|
T Consensus        64 lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg  143 (488)
T KOG2325|consen   64 LDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVG  143 (488)
T ss_pred             cCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcC
Confidence            4444444445679999999999999999999 88886 888999999999999988 33   23 678899999999999


Q ss_pred             cccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcc----------c---chHHHHHHHHHHHHHHH
Q 012500           99 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH----------L---NWRYAFWGEAILMLPFA  165 (462)
Q Consensus        99 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~----------~---gwr~~f~~~~~~~~~~~  165 (462)
                      .| ......+|+++-...++|.++++....+..+|.++||.++..+..-          .   -+..+-|+.+++.++..
T Consensus       144 ~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~  222 (488)
T KOG2325|consen  144 VG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYI  222 (488)
T ss_pred             cc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHH
Confidence            88 4556789999988889999999999999999999999887665531          1   13456677778777877


Q ss_pred             HHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhh
Q 012500          166 VLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEK  245 (462)
Q Consensus       166 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (462)
                      +...+...|..++..+++.++..                       +++.+.++.+               ..+  +...
T Consensus       223 v~i~~~f~E~~~~~~~~~~~~~~-----------------------~~~~~~~~~~---------------~~~--~d~~  262 (488)
T KOG2325|consen  223 VIILFFFKEVYRGIIDKKKRSVE-----------------------EEKSDIEKVK---------------KPK--LDWV  262 (488)
T ss_pred             HHHHhheeecccCccccccccch-----------------------hhccchhhhc---------------cCC--hhHH
Confidence            77777776654443211111100                       0000000000               000  0112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhh-hhHHHhhhhhh-hhhhHHHhhhccccccchhHHHHHH
Q 012500          246 VYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFG-GVTIVCGIVGT-ISGGFILDQMGATISNAFKLLSAAT  322 (462)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~-~~~g~l~d~~~~~~~~~~~~~~~~~  322 (462)
                      ..+.+.+..+...+......+..+.+....++++.... ... ....+.+++.. +...+..-|.++...+  ..+....
T Consensus       263 ~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r--~~~~~g~  340 (488)
T KOG2325|consen  263 AVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKR--RIILLGF  340 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccc--eeeeehH
Confidence            22333344444555555545666666677777775443 222 22333333222 2333333444331111  2332222


Q ss_pred             HHHHHHHHHH-HHh---h---------------------------hhHHHHHH-HHHHHHHHHhccccceeeeeccCCcc
Q 012500          323 FLGAISCLTA-FCL---S---------------------------SLYGFLAL-FTVGELLVFATQAPVNYVCLHSVKPS  370 (462)
Q Consensus       323 ~~~~~~~~~~-~~~---~---------------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (462)
                      +.......+. ...   .                           +.+..+.. ..++|...-.......+..++...|+
T Consensus       341 l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~  420 (488)
T KOG2325|consen  341 LIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPR  420 (488)
T ss_pred             HHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCc
Confidence            2222221111 100   0                           00111111 11122222233445677778889999


Q ss_pred             hhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHHHHHHHHH
Q 012500          371 LRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  423 (462)
Q Consensus       371 ~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  423 (462)
                      .+++..+... ..+..+..++|.+........| ++..+.+..+..++...++
T Consensus       421 ~q~~~qg~~~-~~~s~~~~~~~~~~t~~~~~~g-~~~v~~~~~~~~l~~~~l~  471 (488)
T KOG2325|consen  421 DQGTMQGVFS-ISGSIARVVGPIFSTAIFTLSG-PRPVWIILLCLLLVVAALW  471 (488)
T ss_pred             cccceeEEEE-eccchhhhhhHHHHhhhHHhcC-ccHHHHHHHHHHHHHHHHH
Confidence            9999999985 4455588899988887777766 5565555555544444433

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.57  E-value=1.1e-12  Score=118.27  Aligned_cols=362  Identities=12%  Similarity=0.028  Sum_probs=226.0

Q ss_pred             hHHHHHHHHHHH----------hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHH
Q 012500            4 CIHVLLCLIGLI----------LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVW   72 (462)
Q Consensus         4 ~i~~~~~~~~~~----------~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~   72 (462)
                      ....++|.+|++          .| ++.+.+ .++++.|+.. -+.-...-.++....+...+ |..+.|++++++.+..
T Consensus         5 ~~~~llc~~gf~~~frPsEPfl~~-yL~~~~-kn~T~~qv~~-~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~   81 (412)
T PF01770_consen    5 KITLLLCLFGFFKEFRPSEPFLTP-YLTGPD-KNFTEEQVNN-EIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSY   81 (412)
T ss_pred             HHHHHHHHHHHHHhcCCCCccchH-HHcCCc-cCCCHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            566788999988          23 333221 3566655432 12233333455666677777 8889999999999999


Q ss_pred             HHHHHhhhccchhHHHHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhc--ccch
Q 012500           73 TFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS--HLNW  150 (462)
Q Consensus        73 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~--~~gw  150 (462)
                      .+...+.-+.++...+-+..+.-|++.+. ..+-.+++-...|+++-.++.+...++..+|..++..+|..+..  ..+.
T Consensus        82 i~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy  160 (412)
T PF01770_consen   82 IITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSY  160 (412)
T ss_pred             HHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence            99999999999999999999999999885 66778999999999999999999999999999999999988775  3446


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhh
Q 012500          151 RYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQ  230 (462)
Q Consensus       151 r~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (462)
                      +...++......+..+..++ +|..++..--+++.+....   ..+.+.++.+    +..+++.+..+.+...+......
T Consensus       161 ~~L~~isl~~~~~a~~~~~f-LP~~~~S~~f~r~~~~~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  232 (412)
T PF01770_consen  161 FQLNYISLASVSLALLIALF-LPMPKRSLFFHRKPPAEQD---ANESESDKMN----ESPESSSSTEKSPSTESSSRKSV  232 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cCCCCcccceeccCccccc---cccccccccc----cccccccccccCcccccchHHHH
Confidence            66666655443344343344 4543321111111000000   0000000000    00000000001111111112234


Q ss_pred             hhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh---hhhhhHHHhhhhhhhhhhHHHhhh
Q 012500          231 LSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM---MFGGVTIVCGIVGTISGGFILDQM  307 (462)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~  307 (462)
                      .+..++++++..++|.++...+-+.+...+..-+.+|.....++....+....   ..-+...+.+.++.+..|++..++
T Consensus       233 l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w  312 (412)
T PF01770_consen  233 LRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNW  312 (412)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcch
Confidence            45667788888999999988888888888888788877776666511121111   222455566666777888875555


Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHH
Q 012500          308 GATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIST  380 (462)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (462)
                      .+..   ...+.....+.+.+++++...++.|...+..++.........+....-++.....+.-+...|+.+
T Consensus       313 ~~~~---~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNt  382 (412)
T PF01770_consen  313 DRWG---ELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINT  382 (412)
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHH
Confidence            4431   033344555566666777777888888888888777777666665556666666666666666664

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.56  E-value=5.8e-14  Score=131.74  Aligned_cols=377  Identities=11%  Similarity=0.014  Sum_probs=212.7

Q ss_pred             hhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-ccc-----CCchhHHHHHHHHHHHHHhhhcc----chhHHH
Q 012500           19 SMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSH-----NPFRLIGVGLSVWTFATAGCGSS----FDFWSI   88 (462)
Q Consensus        19 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~-----Grr~~l~~~~~~~~~~~~~~~~~----~~~~~l   88 (462)
                      +.+++  ++.++.+...  ..+...+.- ..-|+.|.+ |.+     .||+-++++.++..++.+..+..    .+....
T Consensus        15 ~l~~~--l~ls~~~~~~--~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~   89 (433)
T PF03092_consen   15 FLKDD--LGLSPAQLQR--LSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA   89 (433)
T ss_pred             HHHHH--cCCCHHHHHH--HHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH
Confidence            44444  7788877554  555555443 335667777 766     35556677777776666555543    356666


Q ss_pred             HHHHHHhhcccccccccccchhcccCC--CCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHH
Q 012500           89 AICRMLVGVGEASFISLAAPFIDDNAP--VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV  166 (462)
Q Consensus        89 ~~~r~l~G~~~g~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~  166 (462)
                      .+.-++..+|.+....++.+++.|...  +++||...+.......+|.+++..++|.+.+..++|..|.+.+++..+..+
T Consensus        90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~  169 (433)
T PF03092_consen   90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLI  169 (433)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHH
Confidence            777788889999999999999999884  344788888999999999999999999999999999999999888777777


Q ss_pred             HHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhH
Q 012500          167 LAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKV  246 (462)
Q Consensus       167 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (462)
                      ..+++.+|.. .. ++++.....                  ++..+.             .....++..+..++.++.+.
T Consensus       170 ~~~~~~~e~~-~~-~~~~~~~~~------------------~~~~~~-------------~~~~~~~~~~~l~~~~~~~~  216 (433)
T PF03092_consen  170 VALFLLEERK-VR-PADEVFSFG------------------KEEVPC-------------LFGSFREQLSELWRALQQRA  216 (433)
T ss_pred             HHHHhhhhcc-cc-ccchhhccc------------------ccccch-------------hhHHHHHHHHHHHHHHhhhH
Confidence            6666665521 11 111000000                  000000             00112233455677778888


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHhhHHHHHHhC---CCcchhh-hhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHH
Q 012500          247 YVVNVL-GYIAYNFVIGAYSYWGPKAGYNIYH---MSNADMM-FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA  321 (462)
Q Consensus       247 ~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  321 (462)
                      ++...+ ..++............-.+..+..+   +++.... ...+..++.++|..+..+...+..-|     +++...
T Consensus       217 i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R-----~~~~~t  291 (433)
T PF03092_consen  217 IWQPILFFIFFFNLPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWR-----RIFVVT  291 (433)
T ss_pred             HHHHHHHHHHHHHhccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-----HHHHHH
Confidence            777666 2222222211100000001112222   3332221 11233333444444433333222222     455444


Q ss_pred             HHHHHHHHHHHH-H---------hhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccc
Q 012500          322 TFLGAISCLTAF-C---------LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPS  391 (462)
Q Consensus       322 ~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  391 (462)
                      .++.....+.-. .         .++.+..+.-..+........+.+....+.+..|+...|+..++.....|. |..++
T Consensus       292 ~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nl-g~~~s  370 (433)
T PF03092_consen  292 TLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNL-GSSVS  370 (433)
T ss_pred             HHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH-HHHHH
Confidence            444333222111 0         122233334445555556666667777889999999999999999767776 88888


Q ss_pred             hhHHHHHHhhhc----chhHHHHHHHHHHHHHHHHHHHHHhhccccccchhh
Q 012500          392 SPLVGVLQDHVN----NWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDG  439 (462)
Q Consensus       392 ~~~~g~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (462)
                      ..++..+.+..+    ++........+..++..+.+.+...++++++..|+.
T Consensus       371 ~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~~~~~~~~  422 (433)
T PF03092_consen  371 STLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQKRITDEL  422 (433)
T ss_pred             HHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHcCCCchhhHHH
Confidence            888888887765    222223333333333333333334556655444433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00889 2A0110 nucleoside transporter

Probab=99.54  E-value=4.2e-14  Score=133.10  Aligned_cols=140  Identities=16%  Similarity=0.208  Sum_probs=122.8

Q ss_pred             hhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccc----hhHHHHHHHHHhhcccccccccccchh
Q 012500           36 SVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLAAPFI  110 (462)
Q Consensus        36 s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i  110 (462)
                      +...+...++.+++.++.|++ ||+|||+++..+.++.+++..+.....    +++.+++.+++.|++.+...+....++
T Consensus       254 g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i  333 (418)
T TIGR00889       254 SIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFV  333 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            558888888999999999999 999999999999999988877666632    346678899999999998888889999


Q ss_pred             cccCCCCCchhHHHHHH-hhhhhhhhhhhhHHHHhhcc------cchHHHHHHHHHHHHHHHHHHhhccccc
Q 012500          111 DDNAPVPQKTAWLSMFY-MCIPTGVALGYVYGGVVGSH------LNWRYAFWGEAILMLPFAVLAFVIKPLQ  175 (462)
Q Consensus       111 ~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~------~gwr~~f~~~~~~~~~~~~~~~~~~p~~  175 (462)
                      .|++|+++|++++++.+ ...++|..+||.++|.+.++      +||+..|.+.+++.++..++.+++.||+
T Consensus       334 ~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       334 EKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999999999997 67889999999999999887      4699999999998888888888887765

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.53  E-value=8.1e-14  Score=134.28  Aligned_cols=159  Identities=8%  Similarity=-0.074  Sum_probs=116.1

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHh---hhccchhHHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAG---CGSSFDFWSIAIC   91 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~l~~~   91 (462)
                      +|.++++.  ++.+..+...  ......++..++.+..|++ ||+|||+++..+.++..++.+.   ...+++...++++
T Consensus       273 ~p~~l~~~--~g~s~~~~~~--~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (490)
T PRK10642        273 MPSYLSHN--LHYSEDHGVL--IIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAG  348 (490)
T ss_pred             HHHHHHHh--cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            67676554  4555544333  6777889999999999999 9999999988887654433322   2234567788889


Q ss_pred             HHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhccc-chHHHHHHHHHHHHHHHHHHhh
Q 012500           92 RMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFV  170 (462)
Q Consensus        92 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~~  170 (462)
                      |++.|++.+........++.|.+|++.|++++++......++..++|.+.+++.+.. +|+.+++...+.+++..+..+ 
T Consensus       349 ~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~-  427 (490)
T PRK10642        349 LLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV-  427 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-
Confidence            999998777666777788899999999999999754445566678888888887754 478777776666655555444 


Q ss_pred             ccccccCCC
Q 012500          171 IKPLQLKGF  179 (462)
Q Consensus       171 ~~p~~~~~~  179 (462)
                      +.||++++.
T Consensus       428 ~~pes~~~~  436 (490)
T PRK10642        428 TMKETANRP  436 (490)
T ss_pred             HhccccCCC
Confidence            458887764

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.47  E-value=9.4e-13  Score=116.69  Aligned_cols=174  Identities=17%  Similarity=0.183  Sum_probs=145.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHH
Q 012500          243 QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA  321 (462)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  321 (462)
                      |.+.+....+.+..+++.--.+..-.|...++ .+++..+. .+.+...+..-++.++.|.++||.+.|     ..+..+
T Consensus        27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~-~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr-----~fm~~g  100 (448)
T COG2271          27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIED-GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPR-----YFMAFG  100 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc-----eeehHH
Confidence            44556666777777777777777777766655 56776666 555888999999999999999999999     888999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHH--HHHH
Q 012500          322 TFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV--GVLQ  399 (462)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--g~l~  399 (462)
                      .+++++..++..+.++.+...++..+.+.+-+.++|+....+.+-+++++||+..++-|...|. |+.+.|++.  +++.
T Consensus       101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNi-GGal~~~~~~la~~~  179 (448)
T COG2271         101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNI-GGALAPLVALLAFFA  179 (448)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhc-ccchHHHHHHHHHHH
Confidence            9999998888888889999999999999999999999999999999999999999999988888 888888888  8888


Q ss_pred             hhhcchhHHHHHHHHHHHHHHHHHH
Q 012500          400 DHVNNWRKTTLALTSIFFLAAGIWF  424 (462)
Q Consensus       400 ~~~g~~~~~~~~~~~~~~~~~~~~~  424 (462)
                      ++. +|+..|++-+++.++..++.+
T Consensus       180 ~~~-~w~~~f~~pgiiaiival~~~  203 (448)
T COG2271         180 FHG-GWRAAFYFPGIIAIIVALILL  203 (448)
T ss_pred             hcc-chhHHHHHHHHHHHHHHHHHH
Confidence            775 598999988887666555443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.45  E-value=6.7e-13  Score=124.94  Aligned_cols=135  Identities=16%  Similarity=0.109  Sum_probs=120.4

Q ss_pred             hHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccccccchhcccCCC
Q 012500           38 NVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPV  116 (462)
Q Consensus        38 ~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~  116 (462)
                      ..+.+.++..++.++.|++ ||+|+|+.+..+..+.+++.++..+.+|.+.+++.+++.|++.+...+.....+.|.+|+
T Consensus       254 ~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~  333 (399)
T PRK05122        254 ALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPP  333 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCH
Confidence            6677888888999999999 999999999999999888888888888988888999999999998888877888899999


Q ss_pred             CCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhcc
Q 012500          117 PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  172 (462)
Q Consensus       117 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  172 (462)
                      ++|+++.++++....+|..+++.+.+.+.++.||++.|++.+++.++..+..++..
T Consensus       334 ~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (399)
T PRK05122        334 QNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLY  389 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999998888777666655553

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.44  E-value=2.2e-13  Score=134.26  Aligned_cols=137  Identities=9%  Similarity=-0.077  Sum_probs=118.9

Q ss_pred             hHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccccccchhcccCCC
Q 012500           38 NVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPV  116 (462)
Q Consensus        38 ~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~  116 (462)
                      ......++.+++.++.|++ ||+|||++++.+.++.+++.++.+++++...+++.+++.|++.+..++...++++|++|.
T Consensus       600 ~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt  679 (742)
T TIGR01299       600 VNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPS  679 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence            4566778899999999999 999999999999999999999999999888888899999998888889999999999999


Q ss_pred             CCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhcccccc
Q 012500          117 PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  176 (462)
Q Consensus       117 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~  176 (462)
                      ++|++++|+.+....+|.++||.+++.+.+. +...+|++.++..++.+++.++ +||+.
T Consensus       680 ~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~-LPET~  737 (742)
T TIGR01299       680 DKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALK-LPDTR  737 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHh-CCCCc
Confidence            9999999999999999999999999988764 4567888887776665555554 47754

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10054 putative transporter; Provisional

Probab=99.44  E-value=3.7e-12  Score=119.25  Aligned_cols=168  Identities=10%  Similarity=0.016  Sum_probs=124.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHH
Q 012500          245 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  323 (462)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  323 (462)
                      +.++.+.+..++..........++|.++++.+|.+..+. ...+...++.+++.+..|+++||+|||     +.+..+..
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k-----~~~~~~~~   81 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKK-----RYMLLAIT   81 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-----hhHHHHHH
Confidence            445666667777888888888899999999899987666 444666788888999999999999998     77766666


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhc
Q 012500          324 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  403 (462)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g  403 (462)
                      ............++.+..+....+.+...+...+.......+..|+++|+++.|+.+...+. |.+++|.+.+.+.+ . 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l-g~~igp~l~~~l~~-~-  158 (395)
T PRK10054         82 AFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNI-GWTVGPPLGTLLVM-Q-  158 (395)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-h-
Confidence            55555555555566655555555555555555556677778888899999999999777666 99999999998875 3 


Q ss_pred             chhHHHHHHHHHHHHHH
Q 012500          404 NWRKTTLALTSIFFLAA  420 (462)
Q Consensus       404 ~~~~~~~~~~~~~~~~~  420 (462)
                      +++..+...+++.++..
T Consensus       159 g~~~~f~~~~~~~~i~~  175 (395)
T PRK10054        159 SINLPFWLAAICSAFPL  175 (395)
T ss_pred             ccCcHHHHHHHHHHHHH
Confidence            47777776665554443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.44  E-value=4.2e-13  Score=127.04  Aligned_cols=137  Identities=9%  Similarity=0.014  Sum_probs=121.0

Q ss_pred             hhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccccccchhcccC
Q 012500           36 SVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA  114 (462)
Q Consensus        36 s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~  114 (462)
                      +++.+...++..++.++.|++ ||+|+|+.+..+.++.+++..+.++++|.+.+++.+++.|++.+...+....++.|.+
T Consensus       265 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  344 (420)
T PRK09528        265 GYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNF  344 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            458888888899999999999 9999999999999999999999999999999999999999998887777888999999


Q ss_pred             CCCCchhHHHH-HHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhcc
Q 012500          115 PVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  172 (462)
Q Consensus       115 ~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  172 (462)
                      |++.|+...+. ++....+|.++++.+.|++.+..|||..|.+.+++.++..++.++..
T Consensus       345 ~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~  403 (420)
T PRK09528        345 DVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTL  403 (420)
T ss_pred             CccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHh
Confidence            99999887665 67778899999999999999999999999998888776666665554

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.43  E-value=6.4e-12  Score=119.32  Aligned_cols=165  Identities=16%  Similarity=0.186  Sum_probs=124.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHH
Q 012500          245 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  323 (462)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  323 (462)
                      +.++...+.+++.+.....+..+.|.+.++ +|.++.+. .+.+...++..++.++.|++.||+|+|     +.+..+.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r-----~~~~~~~~   96 (434)
T PRK11663         23 HILITMYLGYALFYFTRKSFNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNAR-----YFMGIGLI   96 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCc-----hhHHHHHH
Confidence            334444454555555555667778877765 78886655 445778888899999999999999998     77777777


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhc
Q 012500          324 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  403 (462)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g  403 (462)
                      +.....+.....++.+......++.+++.+...+.....+.+.+|+++|+++.++.+...+. |..++|.+.+++.+..|
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~-g~~~~~~~~~~l~~~~g  175 (434)
T PRK11663         97 ATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNV-GGALIPLVVGAIALHYG  175 (434)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccc
Confidence            77766666666667776666666777777777777788888889999999999999766665 99999999999998766


Q ss_pred             chhHHHHHHHHHHH
Q 012500          404 NWRKTTLALTSIFF  417 (462)
Q Consensus       404 ~~~~~~~~~~~~~~  417 (462)
                       |+..+...++..+
T Consensus       176 -w~~~f~~~~i~~~  188 (434)
T PRK11663        176 -WRYGMMIAGIIAI  188 (434)
T ss_pred             -HHHHHHHHHHHHH
Confidence             8887776665443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.43  E-value=8.1e-13  Score=123.83  Aligned_cols=152  Identities=13%  Similarity=0.049  Sum_probs=121.1

Q ss_pred             HhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 012500           15 ILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRM   93 (462)
Q Consensus        15 ~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~   93 (462)
                      ..|.+.+++  ++.++.+.+.  ..+...++.+++.++.|++ ||+|||+.+..+.+...+.......+++.+.+++.++
T Consensus       238 ~~p~~l~~~--~~~~~~~~g~--~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  313 (393)
T PRK15011        238 NMPLFIINE--LHLPEKLAGV--MMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQL  313 (393)
T ss_pred             HHHHHHHHH--cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            366666554  5666666544  6666667778889999999 9999999888777666665555556778888888999


Q ss_pred             HhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhc
Q 012500           94 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  171 (462)
Q Consensus        94 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  171 (462)
                      +.+++.+...+....+..|.+| ++|++++++++...++|..+++.+++.+.++.||+..|++.+++.++..+..++.
T Consensus       314 l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        314 LNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            9888877777777788889998 5699999999999999999999999999999999999998887776655555443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.43  E-value=1.3e-12  Score=123.55  Aligned_cols=157  Identities=13%  Similarity=0.008  Sum_probs=133.8

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML   94 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l   94 (462)
                      .|.+.++.  ++.++.+.+.  ..+.+.++.+++.++.+++ ||.++++.+..+.++.+++.++..+.++.+...++.++
T Consensus       246 ~p~~~~~~--~g~~~~~~g~--~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (417)
T PRK10489        246 YPALADEV--WQMGAAQIGL--LYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLAL  321 (417)
T ss_pred             hHHHHHhc--cCCChhHhHH--HHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence            56565553  4556666444  8889999999999999999 99888888888888888888888888998888889999


Q ss_pred             hhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhcccc
Q 012500           95 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  174 (462)
Q Consensus        95 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  174 (462)
                      .|++.+...+...+++.|..|+++||++++++.....+|..+|+.+.+.+.+.+|++..+++.++..++..++.....|+
T Consensus       322 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  401 (417)
T PRK10489        322 FGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGE  401 (417)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccc
Confidence            99988877777788999999999999999999999999999999999999999999999998888777777777766665


Q ss_pred             cc
Q 012500          175 QL  176 (462)
Q Consensus       175 ~~  176 (462)
                      .+
T Consensus       402 ~~  403 (417)
T PRK10489        402 LR  403 (417)
T ss_pred             cc
Confidence            43

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.42  E-value=1.1e-12  Score=123.85  Aligned_cols=137  Identities=14%  Similarity=0.102  Sum_probs=122.6

Q ss_pred             hhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccccccchhcccC
Q 012500           36 SVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA  114 (462)
Q Consensus        36 s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~  114 (462)
                      +...+.+.++..++.+..|++ ||+|||+.+..+..+..++.+...+.++.+.+++.+++.|++.+...+...+++.+..
T Consensus       261 g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  340 (408)
T PRK09874        261 GMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNS  340 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhC
Confidence            446667788888999999999 9999999999999888888888888888899999999999999999998889999999


Q ss_pred             CCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhcc
Q 012500          115 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  172 (462)
Q Consensus       115 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  172 (462)
                      |+++||+.+++.+....+|..+||.+++.+.++.||+..|++.+++.++..+..++..
T Consensus       341 ~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~  398 (408)
T PRK09874        341 SNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL  398 (408)
T ss_pred             CcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988877776666544

>PRK12382 putative transporter; Provisional

Probab=99.40  E-value=1.5e-12  Score=122.27  Aligned_cols=134  Identities=11%  Similarity=0.049  Sum_probs=120.6

Q ss_pred             hHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccccccchhcccCCC
Q 012500           38 NVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPV  116 (462)
Q Consensus        38 ~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~  116 (462)
                      ....+.++..+++++.|++ ||+|+|+.+..+..+.+++.++..+.++.+.+++..++.|++.+...+.....+.|.+|+
T Consensus       254 ~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  333 (392)
T PRK12382        254 TLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPS  333 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCH
Confidence            5567788888999999999 999999999999999999988888888888888999999999998888888888999999


Q ss_pred             CCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhc
Q 012500          117 PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  171 (462)
Q Consensus       117 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  171 (462)
                      ++||+++++++....+|..++|.+.+.+.++.||+..|.+.+++.++..+..++.
T Consensus       334 ~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        334 QVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999988777766665544

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.40  E-value=2e-12  Score=125.41  Aligned_cols=143  Identities=13%  Similarity=0.073  Sum_probs=110.6

Q ss_pred             HhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhcc--chhHHHHHH
Q 012500           15 ILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSS--FDFWSIAIC   91 (462)
Q Consensus        15 ~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~   91 (462)
                      .+|.+.+++  ++.+..+.+.  ..+.+.++..++.++.|++ ||+|||+++..+.++..+..+.....  .+.+.+.+.
T Consensus       297 ~lp~~l~~~--~g~~~~~~g~--~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (496)
T PRK03893        297 LLPTYLKTD--LGYDPHTVAN--VLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLL  372 (496)
T ss_pred             HHHHHHHhh--cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            467676543  5677777555  8899999999999999999 99999999988877776665544333  344445455


Q ss_pred             HHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHH
Q 012500           92 RMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM  161 (462)
Q Consensus        92 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~  161 (462)
                      .++.+.......+..+.++.|.+|+++|++++++.+....+|..+||.+++.+.++.||+..+...+...
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~  442 (496)
T PRK03893        373 LFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSL  442 (496)
T ss_pred             HHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence            5555443333456677889999999999999999999999999999999999999999998886655443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.39  E-value=1.6e-12  Score=120.11  Aligned_cols=150  Identities=18%  Similarity=0.126  Sum_probs=134.3

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCch-hHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFR-LIGVGLSVWTFATAGCGSSFDFWSIAICRM   93 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~   93 (462)
                      .|.+.++.  .+.++.+.+.  ......++..++.++.+++ ||+|||+ .+..+..+..++.+...+.++.+.+++..+
T Consensus       198 ~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  273 (352)
T cd06174         198 LPLYLQEV--LGLSAAEAGL--LLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALL  273 (352)
T ss_pred             HHHHHHHh--cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            55555543  3556666544  8899999999999999999 9999999 999999999999999999999999999999


Q ss_pred             HhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHh
Q 012500           94 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  169 (462)
Q Consensus        94 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  169 (462)
                      +.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+.+..+|+..+++.+++.++..+..+
T Consensus       274 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         274 LLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            9999999999999999999999999999999999999999999999999999999999999999988777666544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.38  E-value=3.4e-11  Score=105.67  Aligned_cols=232  Identities=10%  Similarity=0.057  Sum_probs=148.4

Q ss_pred             ccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhccccccc
Q 012500           25 FLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFI  103 (462)
Q Consensus        25 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~  103 (462)
                      +++.++.|.+.  +.........+.+++.|.+ ||+|||+.-+.-+++.+++++ +-.++|++.++++|++.|++.....
T Consensus        63 ~yg~~~~qIa~--Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLf  139 (354)
T PF05631_consen   63 SYGFSEHQIAI--LFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLF  139 (354)
T ss_pred             HcCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHH
Confidence            36788888666  8888888999999999999 999999999999999998886 4566899999999999999999888


Q ss_pred             ccccchh-cccCCCC----CchhHHHHHH-hhhhhhhhhhhhHHHHhhcccch--HHHHHHHHHHHHHHHHHHhhccccc
Q 012500          104 SLAAPFI-DDNAPVP----QKTAWLSMFY-MCIPTGVALGYVYGGVVGSHLNW--RYAFWGEAILMLPFAVLAFVIKPLQ  175 (462)
Q Consensus       104 ~~~~~~i-~~~~~~~----~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~gw--r~~f~~~~~~~~~~~~~~~~~~p~~  175 (462)
                      .+-.++. .|+-..+    ..+.-++... ...++-.+.+..++..+.+..+.  ..+|.......++..+++...-+|.
T Consensus       140 S~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~EN  219 (354)
T PF05631_consen  140 SAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPEN  219 (354)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhccccc
Confidence            8777754 5553222    2222222222 12223344455556666665544  7788887776666655554443443


Q ss_pred             cCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHH
Q 012500          176 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  255 (462)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (462)
                      ..+   +++.+                                          +..++..+.++.+.++|+++.+.+...
T Consensus       220 yg~---~~~~~------------------------------------------~~~~~~~~a~~~i~~d~ril~LG~~qs  254 (354)
T PF05631_consen  220 YGD---TSSSS------------------------------------------SLSGSFREAWRAILSDPRILLLGLIQS  254 (354)
T ss_pred             CCC---ccccc------------------------------------------chHHHHHHHHHHHHcCchhHHHHHHHH
Confidence            211   00000                                          001111234667788899988888777


Q ss_pred             HHHHHHHHHH-HHhhHHHHHHhCCCcchhhhhhhHHHhhhhhhhhhhHHHhh
Q 012500          256 AYNFVIGAYS-YWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQ  306 (462)
Q Consensus       256 ~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  306 (462)
                      ++-..++.+. .|.|..-.+..+. |.. .+.+.+.++.++|+.+..++..+
T Consensus       255 lFE~smy~FVflWtPaL~~~~~~~-P~G-lIFssFM~a~MlGS~lf~~l~s~  304 (354)
T PF05631_consen  255 LFEGSMYLFVFLWTPALDPDDEEL-PLG-LIFSSFMVAMMLGSSLFSRLLSK  304 (354)
T ss_pred             HHHHHHHHheeeeeceecCCCCCC-Cch-HHHHHHHHHHHHHHHHHHHHHhC
Confidence            7766655544 5788765211111 212 33355667777788777655544

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.36  E-value=2.9e-12  Score=119.68  Aligned_cols=137  Identities=12%  Similarity=-0.016  Sum_probs=117.4

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchh--HHHHHHHHHhhcccccc
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDF--WSIAICRMLVGVGEASF  102 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~g~~  102 (462)
                      ++.++.+.+.  ..+.+.++..++.++.|++ ||+|||+.+..+.++..++.++..+.++.  ..++...++.|++.+..
T Consensus       235 ~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  312 (377)
T TIGR00890       235 LGLSDGFLVL--AVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGT  312 (377)
T ss_pred             cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccc
Confidence            5566655444  8888999999999999999 99999999999999998888887777643  33456678888888888


Q ss_pred             cccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHH
Q 012500          103 ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPF  164 (462)
Q Consensus       103 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~  164 (462)
                      .+..+.++.|.+|+++|+++.++.+....+|..++|.+.+.+.++.||++.|.+.+++.++.
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       313 ISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             hhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            88888899999999999999999999999999999999999999999999999988765543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.36  E-value=8.6e-12  Score=115.96  Aligned_cols=162  Identities=8%  Similarity=-0.031  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHH
Q 012500          250 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS  328 (462)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  328 (462)
                      .....++...........+|.|..+ .+.++... ...+...++..++.++.|+++||+|||     +.+..+..+....
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----~~~~~~~~~~~~~   77 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRK-----KVMIGADLIRAVL   77 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchh-----HHHHHHHHHHHHH
Confidence            3444555556666666777877776 45554444 445777888899999999999999998     7777666655554


Q ss_pred             HHHHHHhh-----hhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhc
Q 012500          329 CLTAFCLS-----SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  403 (462)
Q Consensus       329 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g  403 (462)
                      ........     +.+..++...+.+++.+...+....++.+..|+++|+++.++.+..... |..++|.+.+.+.+..|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~l~~~l~~~~g  156 (365)
T TIGR00900        78 VAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSL-FYIVGPGIGGLMYATLG  156 (365)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence            44444444     6677777777888888888888888999999999999999999766555 99999999999988766


Q ss_pred             chhHHHHHHHHHHHHH
Q 012500          404 NWRKTTLALTSIFFLA  419 (462)
Q Consensus       404 ~~~~~~~~~~~~~~~~  419 (462)
                       |+..++..+...++.
T Consensus       157 -~~~~~~~~~~~~~~~  171 (365)
T TIGR00900       157 -IKWAIWVDAVGFAIS  171 (365)
T ss_pred             -HHHHHHHHHHHHHHH
Confidence             777776655544433

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.35  E-value=2.4e-11  Score=114.45  Aligned_cols=174  Identities=13%  Similarity=0.011  Sum_probs=122.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhh-ccccccchhHHHHH
Q 012500          244 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQM-GATISNAFKLLSAA  321 (462)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~  321 (462)
                      ++.++......+...+.++++..++|.|+.+..|.++... ...........++.+++|+++||+ |||     +.+..+
T Consensus         8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrr-----r~iliG   82 (493)
T PRK15462          8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNR-----MAVMLG   82 (493)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH-----HHHHHH
Confidence            3445566666677778888899999999999888886555 444666677788899999999999 998     777666


Q ss_pred             HHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhccccceeeeeccCCcc--hhhHHHHHHHHHHhhhccccchhHHHHH
Q 012500          322 TFLGAISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS--LRALSMAISTVSIHIFGDVPSSPLVGVL  398 (462)
Q Consensus       322 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~g~l  398 (462)
                      ..+.....++....+ +.........+...+.+...+...++..+.+|++  +|.++.++.+...+. |+.++|.+.|++
T Consensus        83 ~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nl-G~~iap~l~g~L  161 (493)
T PRK15462         83 ALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNV-GSIIAPIACGYA  161 (493)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHH-HHHHHHHHHHHH
Confidence            666555544433222 1122333333344445555555667788888875  799999999878786 999999999999


Q ss_pred             HhhhcchhHHHHHHHHHHHHHHHHHH
Q 012500          399 QDHVNNWRKTTLALTSIFFLAAGIWF  424 (462)
Q Consensus       399 ~~~~g~~~~~~~~~~~~~~~~~~~~~  424 (462)
                      .+..| |+..|...++..+++.+.++
T Consensus       162 ~~~~G-w~~~F~iaaigm~l~li~~~  186 (493)
T PRK15462        162 QEEYS-WAMGFGLAAVGMIAGLVIFL  186 (493)
T ss_pred             HhhhC-hHHHHHHHHHHHHHHHHHHH
Confidence            98776 88888776655544444443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.35  E-value=1.6e-11  Score=117.44  Aligned_cols=171  Identities=11%  Similarity=-0.059  Sum_probs=129.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--hCCCcchh-hhhhhHHHhhhhhhhhhhHHHhh-hccccccchhHHHH
Q 012500          245 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI--YHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAFKLLSA  320 (462)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~  320 (462)
                      +.++.+.+..++..+.+++...++|.|+++.  .|.+..+. ...+...+...++.+++|+++|| +|||     +.+..
T Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~-----~~l~~   84 (475)
T TIGR00924        10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTK-----KTMVL   84 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchH-----HHHHH
Confidence            3455566666777888889999999999887  77876555 44577788889999999999999 8998     88877


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcc---hhhHHHHHHHHHHhhhccccchhHHHH
Q 012500          321 ATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS---LRALSMAISTVSIHIFGDVPSSPLVGV  397 (462)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~g~  397 (462)
                      +..+..+........++.+.......+.+++.+...+.......+.+|++   .|+++.++.+...+. |.+++|.+.++
T Consensus        85 ~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~ni-G~~ig~~l~g~  163 (475)
T TIGR00924        85 GGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINI-GSFISPLLAGV  163 (475)
T ss_pred             HHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHH-HHHHHHHHHHH
Confidence            77777766666555555555555666667777777777777888877764   488899998777777 99999999999


Q ss_pred             HHhhhcchhHHHHHHHHHHHHHHHH
Q 012500          398 LQDHVNNWRKTTLALTSIFFLAAGI  422 (462)
Q Consensus       398 l~~~~g~~~~~~~~~~~~~~~~~~~  422 (462)
                      +.++.| |+..|...++..+++.+.
T Consensus       164 l~~~~g-~~~~f~~~~~~~~~~~l~  187 (475)
T TIGR00924       164 IAENYG-YHVGFNLAAVGMVIGLLT  187 (475)
T ss_pred             HHHhcC-hHHHHHHHHHHHHHHHHH
Confidence            998766 878887766554444333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.34  E-value=9.1e-13  Score=125.60  Aligned_cols=146  Identities=12%  Similarity=0.118  Sum_probs=117.8

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-ccc--CCchhHH--HHHHHHHHHHHhhhccchhHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSH--NPFRLIG--VGLSVWTFATAGCGSSFDFWSIAI   90 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~--Grr~~l~--~~~~~~~~~~~~~~~~~~~~~l~~   90 (462)
                      +|.+.++   .+.+..+.+.  ..+...++.+++.++.|++ ||.  ++|+...  .+.++.+++.++..++++++.+++
T Consensus       264 l~~~~~~---~g~s~~~~g~--~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i  338 (455)
T TIGR00892       264 LVPYAKD---KGVDEYEAAF--LLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVI  338 (455)
T ss_pred             HHHHHHH---cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence            4555544   4667766555  8888999999999999999 974  3343333  344444555666677889999999


Q ss_pred             HHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhccc-chHHHHHHHHHHHHHHHH
Q 012500           91 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAV  166 (462)
Q Consensus        91 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-gwr~~f~~~~~~~~~~~~  166 (462)
                      .+++.|++.+...+...+++.|.+|++++++.+++++...++|..+||.+++.+.+.. +|++.|++.+++.++..+
T Consensus       339 ~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       339 YCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999877 599999998887655444

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.33  E-value=8.6e-12  Score=117.72  Aligned_cols=151  Identities=13%  Similarity=0.011  Sum_probs=123.3

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML   94 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l   94 (462)
                      .|.+.++   .+.++.+.+.  ..+.+.++.+++.++.|++ ||+|||+.+..+.+...++.+...+.++.+.+.+..++
T Consensus       243 ~p~~~~~---~g~s~~~~~~--~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (406)
T PRK11551        243 LPSLLVG---QGLSRSQAGL--VQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFA  317 (406)
T ss_pred             HHHHHHh---CCCChhhhhH--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            5666654   4677766555  8888999999999999999 99999999988877777777777778888888888888


Q ss_pred             hhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhccc-chHHHHHHHHHHHHHHHHHHhhc
Q 012500           95 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVI  171 (462)
Q Consensus        95 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~~~  171 (462)
                      .|++.+...+...+++.|.+|+++|++.+++.+....+|..+||.+++.+.++. +|+..++......++..++.++.
T Consensus       318 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        318 AGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            998887788888899999999999999999999999999999999999998865 46666666655555544444443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.33  E-value=1.3e-11  Score=117.80  Aligned_cols=150  Identities=19%  Similarity=0.154  Sum_probs=133.4

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML   94 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l   94 (462)
                      +|.+.++.  ++.++..+|.  +.+++.+|.++++.+.+++ +|+++++.+..+.++++++.+..+++++.+..++.-++
T Consensus       241 lPl~a~~~--l~~~a~~yGl--l~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l  316 (524)
T PF05977_consen  241 LPLFARDV--LGGGASGYGL--LLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFL  316 (524)
T ss_pred             hhHHHHHH--hCCcHHHHHH--HHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            67666554  5677777555  9999999999999999999 99999999999999999999999999999999999999


Q ss_pred             hhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHh
Q 012500           95 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  169 (462)
Q Consensus        95 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  169 (462)
                      .|++.....+...+.+.+..|++.|||.++++++....+..+|..+.|.+.+++|-+..+.+.++..++..++.+
T Consensus       317 ~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  317 AGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            999999888888999999999999999999999999999999999999999999999999888776555554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.33  E-value=8.3e-12  Score=116.57  Aligned_cols=149  Identities=11%  Similarity=0.135  Sum_probs=120.7

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML   94 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l   94 (462)
                      .|.+..++  .+.++.+.+.  ..........++.++.|++ ||+|||+++..+.++..+......+.++.+.+++.+++
T Consensus       222 ~~~~~~~~--~g~~~~~~g~--~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (375)
T TIGR00899       222 MPLLIIHE--LGLPDKLAGL--MMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLL  297 (375)
T ss_pred             hHHHHHHH--cCCCHHHHHH--HHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56555443  4666666544  6666666677788999999 99999999988877776666666677888888889999


Q ss_pred             hhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHh
Q 012500           95 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  169 (462)
Q Consensus        95 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  169 (462)
                      .|++.+...+....++.|..| +++++++++++....+|..++|.+++.+.+..||+..|++.++..++..+...
T Consensus       298 ~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       298 NAIFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence            999988888888888999887 46779999999999999999999999999999999999998887766655543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.32  E-value=1.1e-11  Score=115.82  Aligned_cols=144  Identities=13%  Similarity=-0.010  Sum_probs=126.8

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML   94 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l   94 (462)
                      .|.++++   .+.++.+.+.  ..+...++.++..++++++ ||+|+|+.+.++.++.++..+..++++|.+.+++.+++
T Consensus       228 ~~~~l~~---~g~s~~~~g~--l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l  302 (382)
T TIGR00902       228 SAIYWQA---AGISASATGL--LWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQIL  302 (382)
T ss_pred             HHHHHHH---CCCCHhHHHH--HHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHH
Confidence            5656654   6788877665  7788999999999999999 99999999999999999999999999999999999999


Q ss_pred             hhcccccccccccchhcccCCCCCchhHHHHHH-hhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHH
Q 012500           95 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFY-MCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV  166 (462)
Q Consensus        95 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~  166 (462)
                      +|+..+...+....++.+. |+++|++..++++ ...++|..+|+.++|.+.|++|+ ..|++.++++++..+
T Consensus       303 ~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~  373 (382)
T TIGR00902       303 HCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFF  373 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence            9999999999999999998 9899999999986 57789999999999999999996 667777777665443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.32  E-value=4.4e-11  Score=113.81  Aligned_cols=171  Identities=18%  Similarity=0.138  Sum_probs=112.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHH
Q 012500          243 QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA  321 (462)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  321 (462)
                      +++.++...+.....+.....+....|.+ ++ .|.++.+. ...+...++..++.++.|+++||++||     +.+..+
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~-----~~~~~~   97 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPYL-VE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPR-----VFLPAG   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHHH-HH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCc-----eehHHH
Confidence            33444444444444444444455566644 44 37887665 444777888899999999999999998     656555


Q ss_pred             HHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHH
Q 012500          322 TFLGAISCLTAFCL----SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGV  397 (462)
Q Consensus       322 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~  397 (462)
                      ..+.....+.....    ++.+...+..++.+++.+..+++....+.+.+|+++|+++.++.+...+. |..++|.+.+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~-g~~~~~~l~~~  176 (438)
T TIGR00712        98 LILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNI-GGGIPPLLVLL  176 (438)
T ss_pred             HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHh-HhHHHHHHHHH
Confidence            55444444333222    23334445555667776666666777778889999999999999766666 77888877776


Q ss_pred             HHhhhcchhHHHHHHHHHHHHHHH
Q 012500          398 LQDHVNNWRKTTLALTSIFFLAAG  421 (462)
Q Consensus       398 l~~~~g~~~~~~~~~~~~~~~~~~  421 (462)
                      ..+...+|+..++..+.+.++..+
T Consensus       177 ~~~~~~~w~~~f~~~~~~~~i~~~  200 (438)
T TIGR00712       177 GMAWFNDWHAALYFPAICAIIVAL  200 (438)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHH
Confidence            655445588888777666554433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.31  E-value=4.8e-11  Score=111.98  Aligned_cols=164  Identities=13%  Similarity=0.052  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchhhh-hhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHH
Q 012500          248 VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMF-GGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  326 (462)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  326 (462)
                      +......++.....+....++|.++++..+.++....+ .+...+...+..++.|+++||++||     +.+..+..+..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k-----~~l~~~~~~~~   87 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAK-----PMIVTGMLMRA   87 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCch-----HHHHHHHHHHH
Confidence            34445566777777777888898998888888766533 3556677777789999999999998     88877777777


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchh
Q 012500          327 ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWR  406 (462)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~  406 (462)
                      .........++.+..++...+.+++.+...++..+.+.+..|+++|+++.|+.+...+. |..++|.+.+++. ..| |+
T Consensus        88 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-g~~ig~~l~g~l~-~~g-~~  164 (400)
T PRK11646         88 AGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSA-GAVIGALLGSWLL-QYD-FR  164 (400)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-Hhh-HH
Confidence            76666666667666666667777776666677777888889999999999999766666 9999999999998 444 77


Q ss_pred             HHHHHHHHHHHHH
Q 012500          407 KTTLALTSIFFLA  419 (462)
Q Consensus       407 ~~~~~~~~~~~~~  419 (462)
                      ..+++.+...++.
T Consensus       165 ~~f~~~~~~~~~~  177 (400)
T PRK11646        165 LVCATGAVLFVLA  177 (400)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777665554443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.31  E-value=1.4e-11  Score=113.93  Aligned_cols=162  Identities=16%  Similarity=0.135  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHH
Q 012500          253 GYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT  331 (462)
Q Consensus       253 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (462)
                      ..++............|.++.+.+|.++.+. ...+...++..++.++.|+++||+|||     +.+..+..+.....+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~l~~~~~~~~~~~~~   78 (352)
T PF07690_consen    4 AFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRR-----RVLIIGLLLFALGSLL   78 (352)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HH-----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCe-----eeEeehhhhhhhHHHH
Confidence            3455555555666667756667778776665 445778888999999999999999998     7777776666666344


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHH
Q 012500          332 AFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA  411 (462)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  411 (462)
                      ..+.++.+..++..++.+++.+...+....++.+..|+++|+++.++.+...+. |..++|.+.+.+.+..+ |+..+++
T Consensus        79 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~l~~~l~~~~~-~~~~~~~  156 (352)
T PF07690_consen   79 LAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSL-GSILGPLLGGFLISYFG-WRWAFLI  156 (352)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHH-HHHHHHHHHHHCCCHCH-HCCHHHH
T ss_pred             hhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhh-hhhcccchhhhhhhccc-ccccccc
Confidence            433366667777888888888888888999999999999999999999766665 99999999999987655 7777777


Q ss_pred             HHHHHHHHHH
Q 012500          412 LTSIFFLAAG  421 (462)
Q Consensus       412 ~~~~~~~~~~  421 (462)
                      .+...++..+
T Consensus       157 ~~~~~~~~~i  166 (352)
T PF07690_consen  157 SAILSLIAAI  166 (352)
T ss_dssp             HHHHHHHHHH
T ss_pred             ccchhhhhhh
Confidence            7776665554

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.30  E-value=2.1e-11  Score=114.66  Aligned_cols=152  Identities=17%  Similarity=0.152  Sum_probs=115.7

Q ss_pred             HHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHH
Q 012500          262 GAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYG  340 (462)
Q Consensus       262 ~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (462)
                      ..+....|. +.+.++.++... ...+...++..++.++.|++.||+|||     +.+..+..+...........++.+.
T Consensus        11 ~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r-----~~~~~~~~~~~~~~~~~~~~~~~~~   84 (399)
T TIGR00893        11 ANLSFAAPM-LQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGAR-----KTLAVFIVIWGVFTGLQAFAGAYVS   84 (399)
T ss_pred             HhhhHhHHH-HHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcc-----eeeHHHHHHHHHHHHHHHHHcCHHH
Confidence            334444554 556678876555 455778888999999999999999998     6666666666666555556667777


Q ss_pred             HHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHHHHHH
Q 012500          341 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAA  420 (462)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  420 (462)
                      .++..++.+++.+...+....++.+..|+++|+++.++.+...+. |..++|.+.+.+.+..+ |+..+...+...++..
T Consensus        85 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~  162 (399)
T TIGR00893        85 LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGL-GGIIGGPLVGWILIHFS-WQWAFIIEGVLGIIWG  162 (399)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchH-HHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHH
Confidence            888888888888888888888999999999999999999655555 99999999999888766 7777776665544433


Q ss_pred             H
Q 012500          421 G  421 (462)
Q Consensus       421 ~  421 (462)
                      +
T Consensus       163 ~  163 (399)
T TIGR00893       163 V  163 (399)
T ss_pred             H
Confidence            3

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.30  E-value=2e-11  Score=113.97  Aligned_cols=146  Identities=8%  Similarity=0.067  Sum_probs=117.8

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML   94 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l   94 (462)
                      +|.+.++   .+.++.+.+.  ..+.+.++.++++++.|++ ||+|+|+++..+..+..++.+...   +........++
T Consensus       223 lp~~~~~---~g~s~~~~g~--~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~l  294 (381)
T PRK03633        223 MPLYLNH---QGMSDASIGF--WMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML---SQAAMAPALFI  294 (381)
T ss_pred             HHHHHHH---cCCCHHHHHH--HHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHH
Confidence            6766654   3666666544  7888889999999999999 999999999888888877665443   22344557788


Q ss_pred             hhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHh
Q 012500           95 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  169 (462)
Q Consensus        95 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  169 (462)
                      .|++.+...|...+.+.|..|+++++.+.+.+....++|..+||.++|++.+++||++.|.+.+.+.++..+..+
T Consensus       295 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        295 LGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             HHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence            888877788989999999999888888888888899999999999999999999999999998887765544333

>PRK03545 putative arabinose transporter; Provisional

Probab=99.30  E-value=3.1e-11  Score=113.20  Aligned_cols=151  Identities=15%  Similarity=0.122  Sum_probs=118.3

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHH-HhhhccchhHHHHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFAT-AGCGSSFDFWSIAICRM   93 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~r~   93 (462)
                      +|.+..++  .+.++.+.+.  ..+.+.++.+++.++.|++ ||+|||++.. +..+..++. .+....++.+.+++..+
T Consensus       228 ~~~~l~~~--~g~s~~~~~~--~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~  302 (390)
T PRK03545        228 IEPFVQQV--AGLSENFATL--LLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSI  302 (390)
T ss_pred             HHHHHHHh--cCCCccHHHH--HHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence            34454443  4566666444  7888889999999999999 9999887544 444444443 34456678888888999


Q ss_pred             HhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhcc
Q 012500           94 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  172 (462)
Q Consensus        94 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  172 (462)
                      +.|++.+...+.....+.+..| ++|++++++++....+|..+||.++|.+.+++|+|..|++.+.+.++..+..+...
T Consensus       303 l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        303 FWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            9999887777777778888876 68999999999999999999999999999999999999999988877666665554

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.30  E-value=1.4e-11  Score=118.29  Aligned_cols=153  Identities=12%  Similarity=-0.045  Sum_probs=113.5

Q ss_pred             HhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHH--hhhccchhHHHHHH
Q 012500           15 ILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATA--GCGSSFDFWSIAIC   91 (462)
Q Consensus        15 ~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~--~~~~~~~~~~l~~~   91 (462)
                      ..|.+++++  ++.+..+.+.  ..+.+.++..++.++.|++ ||+|||+.+.....+..++..  .....++.+.+.+.
T Consensus       280 ~~p~yl~~~--~g~s~~~a~~--~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (467)
T PRK09556        280 WSPVYAFQE--LGFSKEDAIN--TFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLAS  355 (467)
T ss_pred             HHHHHHHHc--cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            378777665  5666666544  7788889999999999999 999999987665544443332  22344567677788


Q ss_pred             HHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhh-hhhhhhhHHHHhhc------------ccchHHHHHHHH
Q 012500           92 RMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGS------------HLNWRYAFWGEA  158 (462)
Q Consensus        92 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~------------~~gwr~~f~~~~  158 (462)
                      +++.|++.............|.+|+++||++.|+.+...++ |..++|.+.|.+.+            ..||+..|++.+
T Consensus       356 ~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~  435 (467)
T PRK09556        356 LFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALD  435 (467)
T ss_pred             HHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHH
Confidence            88888654333333345667999999999999999988886 77999999999998            578999999887


Q ss_pred             HHHHHHHHHHhhc
Q 012500          159 ILMLPFAVLAFVI  171 (462)
Q Consensus       159 ~~~~~~~~~~~~~  171 (462)
                      +..++..+..++.
T Consensus       436 ~~~~~~~~~~~~~  448 (467)
T PRK09556        436 IAAIGCICLMAIV  448 (467)
T ss_pred             HHHHHHHHHHHHH
Confidence            7766655544433

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=99.30  E-value=3.8e-10  Score=101.99  Aligned_cols=322  Identities=15%  Similarity=0.060  Sum_probs=183.9

Q ss_pred             chhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccccccchhccc
Q 012500           35 SSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDN  113 (462)
Q Consensus        35 ~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~  113 (462)
                      .+.+..+-.+..++.-+.+.++ +|+..+.=.....+++.++.++.++++|.+.=+++-.+.+++.|........+.. .
T Consensus        61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~  139 (402)
T PF02487_consen   61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-F  139 (402)
T ss_pred             chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-h
Confidence            3446777777888888888888 9988777777788899999999999999999899999999999988877777654 5


Q ss_pred             CCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccch--HHHHHHHHHHHHHHHHHHhhccccccCCCCCcccccccccc
Q 012500          114 APVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW--RYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVA  191 (462)
Q Consensus       114 ~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gw--r~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  191 (462)
                      +++    ...+-+..+.+.+.++|+..-..+.+ .|+  |..+++...+.++..+..++.+|..+......+.+...  +
T Consensus       140 y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~--~  212 (402)
T PF02487_consen  140 YGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESED--E  212 (402)
T ss_pred             cCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCC--c
Confidence            553    35788888888888888877666655 554  77888887776666666666665432211111110000  0


Q ss_pred             ccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 012500          192 SVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKA  271 (462)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  271 (462)
                               .+++    ...++..+.+.+...+    ...++.++..|.++.  .+..+.+.+++-+....++.   |..
T Consensus       213 ---------~~~~----~~~~~~~~~~~~~~~~----~~~~~k~~~~k~Ll~--ymiPL~lVY~aEY~InqGv~---~tl  270 (402)
T PF02487_consen  213 ---------AEDD----LLESETSESKPDSSSK----LSFKEKLKRLKPLLW--YMIPLFLVYFAEYFINQGVA---PTL  270 (402)
T ss_pred             ---------cccc----ccccccccccccccch----hhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhchH---HHh
Confidence                     0000    0000000000000000    111111222333222  33334444444444433333   222


Q ss_pred             HHHHhCCCc-chh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHH
Q 012500          272 GYNIYHMSN-ADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA---FCLSSLYGFLALFT  346 (462)
Q Consensus       272 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  346 (462)
                      .......++ ..+ .+...+.++-++++--...+  |+.+.     +++.....+-.+.+++-   .+.++.|..++.++
T Consensus       271 ~fp~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~l-----wils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif  343 (402)
T PF02487_consen  271 LFPNSFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RIRRL-----WILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIF  343 (402)
T ss_pred             cCCccCCCHHHHHHHHHHHHHHHHhhhhcceeee--ehhhH-----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            211112222 223 44466666666665432221  22111     22222222222222221   22356777777778


Q ss_pred             HHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhH
Q 012500          347 VGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPL  394 (462)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  394 (462)
                      ..|...|..+...+..+.++.++++|..++|... ....+|..++..+
T Consensus       344 ~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vs-vsds~GI~lAgll  390 (402)
T PF02487_consen  344 YEGLLGGASYVNTFYRISEEVPPEDREFSLGAVS-VSDSLGILLAGLL  390 (402)
T ss_pred             HHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHhhHHHHHHHHH
Confidence            8888888899988999999999999999999994 4444466666533

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.29  E-value=9.3e-11  Score=110.71  Aligned_cols=159  Identities=11%  Similarity=0.085  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHH
Q 012500          248 VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  326 (462)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  326 (462)
                      ....+..+.............|.+ .+.++.++.+. ...+...++..++.++.|++.||+|||     +.+..+..+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r-----~~~~~~~~~~~   88 (405)
T TIGR00891        15 SAAWLGWLLDAFDFFLVALVLAEV-AGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRR-----LPMVTSIVLFS   88 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHHHHHHH
Confidence            344444555555555555666654 55678886665 445778888999999999999999999     77777766666


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhc-ch
Q 012500          327 ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN-NW  405 (462)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~  405 (462)
                      +..+.....++.+..+...++.+++.+...+....++.+..|+++|+++.++.+..... |.++++.+.+.+.+..+ +|
T Consensus        89 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~l~~~l~~~~~~~w  167 (405)
T TIGR00891        89 AGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAV-GAVVAAQVYSLVVPVWGDGW  167 (405)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCccH
Confidence            66666666677777777778888888888888888888999999999999999655555 99999999888887654 46


Q ss_pred             hHHHHHHH
Q 012500          406 RKTTLALT  413 (462)
Q Consensus       406 ~~~~~~~~  413 (462)
                      +..+...+
T Consensus       168 ~~~f~~~~  175 (405)
T TIGR00891       168 RALFFISI  175 (405)
T ss_pred             HHHHHHHH
Confidence            66665543

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.28  E-value=3.8e-11  Score=109.39  Aligned_cols=189  Identities=10%  Similarity=0.013  Sum_probs=143.8

Q ss_pred             cchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchhhhhhhHHHhhhhhhhhhhHHHhhhccccc
Q 012500          233 QFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATIS  312 (462)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~  312 (462)
                      ..+.+..+++.++....+++...+.+.....+.+++=-++++..+.+............+-++.-++.+++.+|+|+-  
T Consensus       359 ~v~a~~~~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv--  436 (618)
T KOG3762|consen  359 SVLADVGKVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHV--  436 (618)
T ss_pred             HHHHHHHHHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhccc--
Confidence            445555567788777776666666667666677777666777654443222333455666688888999999999998  


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccch
Q 012500          313 NAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  392 (462)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  392 (462)
                         +++..++....+=.+......++|..+..-++-+...+..+..+.+++....||+.++++.++.......+|--+|+
T Consensus       437 ---~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~Gs  513 (618)
T KOG3762|consen  437 ---NVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGS  513 (618)
T ss_pred             ---ceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhh
Confidence               77777777777778888888999999999999999999999999999999999999999999998888777999999


Q ss_pred             hHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 012500          393 PLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGI  427 (462)
Q Consensus       393 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  427 (462)
                      +++|.+.+++|. ...|..+++.+++..+......
T Consensus       514 lIGG~~v~~fg~-~ttf~~~giAcl~~l~~~~~iq  547 (618)
T KOG3762|consen  514 LIGGFVVERFGA-RTTFRIFGIACLVTLALFISIQ  547 (618)
T ss_pred             hhhhhhheeehh-HHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999874 4556655555444444444333

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.28  E-value=2e-11  Score=114.11  Aligned_cols=156  Identities=16%  Similarity=0.130  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHH
Q 012500          255 IAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF  333 (462)
Q Consensus       255 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (462)
                      ++.+.....+....|. +.+.++.++.+. ...+...++..++.++.|+++||+|||     +.+..+..+..+..++..
T Consensus         5 ~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~~~~~~   78 (379)
T TIGR00881         5 AAYYLVRKNFALAMPY-LVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPR-----VFLPIGLILCAIVNLFFG   78 (379)
T ss_pred             hHHHHhHHhhhhhhHH-HHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCe-----ehhHHHHHHHHHHHHHHH
Confidence            3444455555666664 455678886655 455778888899999999999999999     777777777766666666


Q ss_pred             HhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchh-HHHHHHhhhcchhHHHHHH
Q 012500          334 CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSP-LVGVLQDHVNNWRKTTLAL  412 (462)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~g~l~~~~g~~~~~~~~~  412 (462)
                      ..++.+..++...+.+++.+...+....++.+..|+++|+++.++.+..... |..++|. +.+.+.+.. +|+..++..
T Consensus        79 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~-~~~~~~~~~  156 (379)
T TIGR00881        79 FSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNV-GGGLLPPLVLFGIAELY-SWHWVFIVP  156 (379)
T ss_pred             HhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchh-HHHHHHHHHHHHHHhcC-CchhHHHHH
Confidence            6677777777778888888888888888999999999999999998655555 8888884 555555543 476766665


Q ss_pred             HHHHHH
Q 012500          413 TSIFFL  418 (462)
Q Consensus       413 ~~~~~~  418 (462)
                      +.+.++
T Consensus       157 ~~~~~~  162 (379)
T TIGR00881       157 GIIAII  162 (379)
T ss_pred             HHHHHH
Confidence            554443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.28  E-value=1.5e-10  Score=111.31  Aligned_cols=176  Identities=11%  Similarity=-0.043  Sum_probs=121.2

Q ss_pred             Hhhhh-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhh-hccccccchhH
Q 012500          241 LLQEK-VYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAFKL  317 (462)
Q Consensus       241 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~  317 (462)
                      .+++| .++......++..+.++++..++|.|+++.+|.+.... ..............+++|+++|| +|||     +.
T Consensus        16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r-----~~   90 (500)
T PRK09584         16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTK-----RV   90 (500)
T ss_pred             hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH-----HH
Confidence            44555 47777777788888888999999999999999986554 32233333334445689999999 5998     77


Q ss_pred             HHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhccccceeeeeccCCcc--hhhHHHHHHHHHHhhhccccchhH
Q 012500          318 LSAATFLGAISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS--LRALSMAISTVSIHIFGDVPSSPL  394 (462)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~  394 (462)
                      +..+..+..+...+....+ +.+...+...+.+++.+...+.......+.+|++  .+..+.++.+...+. |..++|.+
T Consensus        91 ~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~i-G~~~gp~i  169 (500)
T PRK09584         91 IMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINI-GSFFSMLA  169 (500)
T ss_pred             HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHH-HHHHHHHH
Confidence            7766666665544444432 3333444455566676666676677888888764  345677877667776 99999999


Q ss_pred             HHHHHhhhcchhHHHHHHHHHHHHHHHHH
Q 012500          395 VGVLQDHVNNWRKTTLALTSIFFLAAGIW  423 (462)
Q Consensus       395 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  423 (462)
                      .|++.|..| |+..|...++..+++.+.+
T Consensus       170 ~g~l~~~~g-~~~~F~i~~i~~~i~~i~~  197 (500)
T PRK09584        170 TPWLAAKYG-WSVAFALSVVGMLITVVNF  197 (500)
T ss_pred             HHHHHHhhC-HHHHHHHHHHHHHHHHHHH
Confidence            999999876 8888887665544444333

>PRK03699 putative transporter; Provisional

Probab=99.27  E-value=2.2e-10  Score=107.54  Aligned_cols=166  Identities=8%  Similarity=0.026  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHH
Q 012500          247 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLG  325 (462)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  325 (462)
                      .+...+..++...........+|.+.+ .++.++.+. ...+...++..++.++.|++.||+|||     +.+..+..+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~g~~~~~i~~-~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r-----~~~~~~~~~~   82 (394)
T PRK03699          9 TWISFLSYALTGALVIVTGMVMGPIAE-YFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLK-----RQLIFGFALM   82 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-----HHHHHHHHHH
Confidence            344444445555555556666777654 578886555 445677888899999999999999999     7777666666


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcch
Q 012500          326 AISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNW  405 (462)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~  405 (462)
                      .+...+....++.+..++...+.+++.+...+.....+.+..|+++|+.+.+..+..... ++.++|.+.+.+.+...+|
T Consensus        83 ~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~gw  161 (394)
T PRK03699         83 ILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSM-AGMIFPIIAAYLLARSIEW  161 (394)
T ss_pred             HHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccH
Confidence            666555555667777777777788888777777778888888888999999888655555 7788898888887654468


Q ss_pred             hHHHHHHHHHHHHH
Q 012500          406 RKTTLALTSIFFLA  419 (462)
Q Consensus       406 ~~~~~~~~~~~~~~  419 (462)
                      +..+...+...+..
T Consensus       162 ~~~f~~~~~~~~~~  175 (394)
T PRK03699        162 YWVYACIGLVYVAI  175 (394)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88877666554443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.27  E-value=1.2e-10  Score=111.46  Aligned_cols=172  Identities=12%  Similarity=-0.003  Sum_probs=125.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhh-hccccccchhHHHHHH
Q 012500          245 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAFKLLSAAT  322 (462)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~  322 (462)
                      +.++..+...+...+.+++...+++.|+++..|.+.... .....+.....+..+++|+++|| +|||     +.+..+.
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r-----~~~~~g~   88 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTK-----RTIVLGA   88 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchH-----HHHHHHH
Confidence            455666666777888889999999999999888886555 33344555555667789999999 9999     8888777


Q ss_pred             HHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhccccceeeeeccCCcc--hhhHHHHHHHHHHhhhccccchhHHHHHH
Q 012500          323 FLGAISCLTAFCLSSLY-GFLALFTVGELLVFATQAPVNYVCLHSVKPS--LRALSMAISTVSIHIFGDVPSSPLVGVLQ  399 (462)
Q Consensus       323 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~g~l~  399 (462)
                      .+..+..+......+.. ..++...+.+.+.+...+....++.+.+|++  +|+.+.++.+...+. |.+++|.+.|++.
T Consensus        89 ~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~ni-g~~~g~~l~g~l~  167 (489)
T PRK10207         89 IVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINI-GSLISLSLAPVIA  167 (489)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHH-HHHHHHHHHHHHH
Confidence            77776665555444322 2334556667777777788888999999886  457788888777787 9999999999999


Q ss_pred             hhhcchhHHHHHHHHHHHHHHHHH
Q 012500          400 DHVNNWRKTTLALTSIFFLAAGIW  423 (462)
Q Consensus       400 ~~~g~~~~~~~~~~~~~~~~~~~~  423 (462)
                      ++.| |+..|++..+..+.+.+.+
T Consensus       168 ~~~g-w~~~F~i~~i~~~~~~~~~  190 (489)
T PRK10207        168 DKFG-YSVTYNLCGAGLIIALLVY  190 (489)
T ss_pred             HhhC-hHHHHHHHHHHHHHHHHHH
Confidence            9876 8888877554444333333

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.27  E-value=9.3e-11  Score=110.48  Aligned_cols=162  Identities=10%  Similarity=0.035  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHH
Q 012500          250 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS  328 (462)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  328 (462)
                      ..+.+.+.+..........| .++++++.+..+. ...+...++..++.+..|++.||+|||     +.+..+.++..+.
T Consensus        13 ~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r-----~~~~~~~~~~~~~   86 (412)
T TIGR02332        13 LFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGAR-----RWIAGIMVLWGIA   86 (412)
T ss_pred             HHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChH-----HHHHHHHHHHHHH
Confidence            33333443444444445555 6677788887666 445778888899999999999999999     7777777777766


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhh-----hc
Q 012500          329 CLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH-----VN  403 (462)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~-----~g  403 (462)
                      .......++.+..++.-++.|++.+...+....++.+.+|+++|+++.++.+..... |..+++.+.+++.+.     ..
T Consensus        87 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~  165 (412)
T TIGR02332        87 STATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPV-TMALGLILSGYILALDGLMALK  165 (412)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCcc
Confidence            666666677777777778888888877777777778888999999999999766665 889999999988753     12


Q ss_pred             chhHHHHHHHHHHHH
Q 012500          404 NWRKTTLALTSIFFL  418 (462)
Q Consensus       404 ~~~~~~~~~~~~~~~  418 (462)
                      +|+..+++.+...++
T Consensus       166 gwr~~f~~~~~~~l~  180 (412)
T TIGR02332       166 GWQWLFLLEGFPSVI  180 (412)
T ss_pred             chhHHHHHHHHHHHH
Confidence            588888776555443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10504 putative transporter; Provisional

Probab=99.27  E-value=1.3e-10  Score=111.84  Aligned_cols=168  Identities=14%  Similarity=0.108  Sum_probs=126.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHH
Q 012500          245 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  323 (462)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  323 (462)
                      +.++...+..++.......+..+.|.+.++ +|.++... ...+...++..++.++.|+++||+|||     +.+..+..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r-----~~~~~~~~   83 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVR-----NIFFTAIV   83 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH-----HHHHHHHH
Confidence            456666676777777777788889988876 77886554 344666777788999999999999998     77666655


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhc
Q 012500          324 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  403 (462)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g  403 (462)
                      +.....+.....++.+..++..++.+++.+...+.....+.+.+|+++|+++.++.+...+. |..++|.+.|.+.+..|
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~~~g~l~~~~g  162 (471)
T PRK10504         84 LFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQV-GPLLGPALGGLLVEYAS  162 (471)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHhhcc
Confidence            55555444445566667777777888888877777777888889999999999999765565 88999999999999765


Q ss_pred             chhHHHHHHHHHHHHHH
Q 012500          404 NWRKTTLALTSIFFLAA  420 (462)
Q Consensus       404 ~~~~~~~~~~~~~~~~~  420 (462)
                       |+..|.+......+..
T Consensus       163 -w~~~f~~~~~~~~l~~  178 (471)
T PRK10504        163 -WHWIFLINIPVGIIGA  178 (471)
T ss_pred             -HHHHHHHHHHHHHHHH
Confidence             8777776655544433

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.26  E-value=2.2e-10  Score=103.08  Aligned_cols=176  Identities=16%  Similarity=0.084  Sum_probs=147.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHH
Q 012500          245 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  323 (462)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  323 (462)
                      ...+.+.++.++.....+.....+|..-++ ++.+.... ...+.+..+..++.++...+.||+.||     +.+.....
T Consensus        13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~d-l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr-----~lLl~~l~   86 (394)
T COG2814          13 LALLALALAAFAIGTTEFVPVGLLPPIAAD-LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERR-----RLLLGLLA   86 (394)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhchHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchH-----HHHHHHHH
Confidence            344566666777777787888888887766 77886655 555889999999999999999999999     99999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhc
Q 012500          324 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  403 (462)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g  403 (462)
                      +.....++....++.+..++.=.+.++..+..++.......+.+||++|+++.++....... +.++|.+++.++-|.+|
T Consensus        87 lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tl-A~v~GvPLGt~ig~~~G  165 (394)
T COG2814          87 LFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTL-ATVLGVPLGTFLGQLFG  165 (394)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHH-HHHHhccHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999655555 99999999999999988


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhc
Q 012500          404 NWRKTTLALTSIFFLAAGIWFVGIFLK  430 (462)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (462)
                       |+..|...+.+.+...+..  +..+|
T Consensus       166 -WR~~F~~ia~l~ll~~~~~--~~~lP  189 (394)
T COG2814         166 -WRATFLAIAVLALLALLLL--WKLLP  189 (394)
T ss_pred             -HHHHHHHHHHHHHHHHHHH--HHhCC
Confidence             9999888887765554443  34556

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.25  E-value=7.2e-11  Score=110.60  Aligned_cols=154  Identities=12%  Similarity=0.079  Sum_probs=120.3

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhc-cchhHHHHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGS-SFDFWSIAICRM   93 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~r~   93 (462)
                      +|.+..+   .+.+..+.+.  ..+.+.++.+++.+..|++ ||+|||+.+..+..+..++.++... .++...+.  -+
T Consensus       228 lp~~l~~---~g~s~~~ag~--~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~  300 (393)
T PRK09705        228 LPAFYIE---IGASAQYSGS--LLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--AM  300 (393)
T ss_pred             HHHHHHH---cCCChhhhhH--HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--HH
Confidence            6666654   4677777555  8899999999999999999 9999999999888887777665543 33322222  24


Q ss_pred             HhhcccccccccccchhcccCC-CCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccc-hHHHHHHHHHHHHHHHHHHhhc
Q 012500           94 LVGVGEASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVI  171 (462)
Q Consensus        94 l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~~  171 (462)
                      +.|++.+...+.......+..+ +++|++..++.+....++..++|.+.+++.++.| |+..|++.++.+++..+..+.+
T Consensus       301 l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (393)
T PRK09705        301 VCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRF  380 (393)
T ss_pred             HHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence            5688888777777767677775 5789999999999999999999999999999876 8888888888777777766777


Q ss_pred             ccccc
Q 012500          172 KPLQL  176 (462)
Q Consensus       172 ~p~~~  176 (462)
                      .||++
T Consensus       381 ~~~~~  385 (393)
T PRK09705        381 APARF  385 (393)
T ss_pred             ccccc
Confidence            67654

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.24  E-value=2.6e-11  Score=117.23  Aligned_cols=155  Identities=6%  Similarity=-0.086  Sum_probs=117.1

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhc-----cc------
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGS-----SF------   83 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~-----~~------   83 (462)
                      .|.+.++   .+.+..+.  ++......++..++.++.+++ ||+|||+.+..+.++.+++.++.++     .+      
T Consensus       307 ~~~~~~~---~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (481)
T TIGR00879       307 SPTIFEN---AGVSTDHA--FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSS  381 (481)
T ss_pred             HHHHHHH---cCCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccch
Confidence            4544433   45555443  337788888889999999999 9999999999998888887776652     11      


Q ss_pred             hhHHHHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHH
Q 012500           84 DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLP  163 (462)
Q Consensus        84 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~  163 (462)
                      +...+....+..+.......+....++.|.+|+++|++++++.+...++|.+++|.+.+.+.++.+|++.|++.++++++
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~  461 (481)
T TIGR00879       382 GNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVL  461 (481)
T ss_pred             hHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHH
Confidence            23333333333333223344666777899999999999999999999999999999999999989999999999988888


Q ss_pred             HHHHHhhccccc
Q 012500          164 FAVLAFVIKPLQ  175 (462)
Q Consensus       164 ~~~~~~~~~p~~  175 (462)
                      ..+..+++.||+
T Consensus       462 ~~i~~~~~~~~~  473 (481)
T TIGR00879       462 GLIFVYFFLPET  473 (481)
T ss_pred             HHHHHheecccC
Confidence            877777776664

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.24  E-value=2.3e-10  Score=106.40  Aligned_cols=148  Identities=17%  Similarity=0.086  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHH
Q 012500          246 VYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFL  324 (462)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  324 (462)
                      .++...+..+...........+.|.++++.+|.++... ...+...++..++.++.|+++||+|||     +.+..+..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~   76 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPR-----YTTTLSLLL   76 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCch-----HHHHHHHHH
Confidence            34555666666666777778888877888899997666 445778888999999999999999998     777777777


Q ss_pred             HHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHh
Q 012500          325 GAISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  400 (462)
Q Consensus       325 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~  400 (462)
                      ..+..+.....+ +.+..++..++.+++.+ ...+....+.+..|+++|+++.++.....+. |..+++.+.+.+.+
T Consensus        77 ~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~l~~  151 (366)
T TIGR00886        77 LAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNM-GGGVAQFVMPPIIG  151 (366)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHH-HHHHHHHHHHHHHH
Confidence            666666666566 66666666666666543 3455667788888889999999998544444 77777777666654

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.24  E-value=1.3e-10  Score=108.96  Aligned_cols=155  Identities=15%  Similarity=0.049  Sum_probs=115.6

Q ss_pred             HHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhh
Q 012500          259 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS  337 (462)
Q Consensus       259 ~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (462)
                      ..........|.+ .+.+|.++.+. ...+...++..++.++.|++.||+|||     +.+..+..+...........++
T Consensus        19 ~~~~~~~~~~p~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r-----~~~~~~~~~~~~~~~~~~~~~~   92 (385)
T TIGR00710        19 LGIDMYLPAFPEI-AADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRR-----PVLLLGLFIFALSSLGLALSNN   92 (385)
T ss_pred             HHHHHhcccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh-----HHHHHHHHHHHHHHHHHHHHcc
Confidence            3334444445554 44577776555 445777888899999999999999998     7777777776666666666677


Q ss_pred             hHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHHH
Q 012500          338 LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFF  417 (462)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  417 (462)
                      .+...+..++.+++.+...+....++.+..|+++|+++.++.+..... |..++|.+.+.+.+..+ |+..++..+...+
T Consensus        93 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~  170 (385)
T TIGR00710        93 IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLAL-APAVAPLLGGYILVWLS-WHAIFAFLSLAGI  170 (385)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHHH
Confidence            777777777788887777778888889999999999999999766555 88899999999988765 7777766655544


Q ss_pred             HHHH
Q 012500          418 LAAG  421 (462)
Q Consensus       418 ~~~~  421 (462)
                      ...+
T Consensus       171 ~~~~  174 (385)
T TIGR00710       171 LLSA  174 (385)
T ss_pred             HHHH
Confidence            4333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.23  E-value=3.6e-10  Score=105.87  Aligned_cols=144  Identities=15%  Similarity=0.054  Sum_probs=112.8

Q ss_pred             HHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 012500          265 SYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLA  343 (462)
Q Consensus       265 ~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (462)
                      ...+|.+.+ .+|.++.+. ...+...++..++.++.|++.||+|||     +.+..+..+.....+.....++.+..++
T Consensus        40 ~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~  113 (394)
T PRK10213         40 VSLLTPMAQ-DLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRR-----YVVILFAVLLTLSCLLVSFANSFSLLLI  113 (394)
T ss_pred             HhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcH-----HHHHHHHHHHHHHHHHHHHHChHHHHHH
Confidence            334565544 577776655 444677888888999999999999999     8887777777766666666677888888


Q ss_pred             HHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHH
Q 012500          344 LFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIF  416 (462)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  416 (462)
                      .-.+.+++.+...+.....+.+.+|+++|+++.++.....+. |..++|.+.+.+.+..| |+..+++.+.+.
T Consensus       114 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-g~~ig~~l~~~l~~~~g-w~~~f~~~~~l~  184 (394)
T PRK10213        114 GRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSI-ALVIAAPLGSFLGELIG-WRNVFNAAAVMG  184 (394)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcC-HHHHHHHHHHHH
Confidence            878888888887788888888999999999999999665565 99999999999998876 877777665443

>TIGR00895 2A0115 benzoate transport

Probab=99.22  E-value=5e-11  Score=112.21  Aligned_cols=150  Identities=14%  Similarity=0.162  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhh
Q 012500          258 NFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS  336 (462)
Q Consensus       258 ~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (462)
                      ...........|.+.+ .+|.++... ...+...++..++.++.|+++||++||     +.+..+..+...........+
T Consensus        30 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-----~~~~~~~~~~~~~~~~~~~~~  103 (398)
T TIGR00895        30 GYDLAAMGFAAPAISA-EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRK-----RVLLWSILLFSVFTLLCALAT  103 (398)
T ss_pred             HHHHHHHHhhHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHcc
Confidence            3334444555665544 477776555 444667788899999999999999998     777776666666665555566


Q ss_pred             hhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHH
Q 012500          337 SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  415 (462)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  415 (462)
                      +.+..++...+.+++.+...+....++.+..|+++|+++.++.+..... |..++|.+.+++.+..| |+..+.+.+..
T Consensus       104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~g-~~~~~~~~~~~  180 (398)
T TIGR00895       104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPI-GAAVGGFLAGWLIPVFG-WRSLFYVGGIA  180 (398)
T ss_pred             chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHH-HHHHHHHHHHHHhhccc-ceeehhhhhhH
Confidence            7777777777778877777888888889999989999999999655555 88999999999988765 66666665433

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.22  E-value=8.7e-09  Score=94.93  Aligned_cols=308  Identities=11%  Similarity=0.017  Sum_probs=178.3

Q ss_pred             HHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccccccchhcccCCCC
Q 012500           39 VLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP  117 (462)
Q Consensus        39 ~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~  117 (462)
                      .+.......+++++++.+ |+.|.|+.+.++...+..-.+..-+- |-+-++++-.+.|+|.+..+..--.+++|..+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            344445555666677777 77799999999999998877766554 5677888999999999999999999999999999


Q ss_pred             CchhHHHHHHhhhhhhhhhhhhHHHHhhcc--------cchH-HHH----------HHHHHHHHHHHH--HHhhcccccc
Q 012500          118 QKTAWLSMFYMCIPTGVALGYVYGGVVGSH--------LNWR-YAF----------WGEAILMLPFAV--LAFVIKPLQL  176 (462)
Q Consensus       118 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~--------~gwr-~~f----------~~~~~~~~~~~~--~~~~~~p~~~  176 (462)
                      ++.+..++.......+.++|..+-..+..+        .+-+ ..+          .+.+++..+..+  ......|.+.
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~  214 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD  214 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence            999999999999988888887665443321        1111 111          111111101000  0011111100


Q ss_pred             CCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHH
Q 012500          177 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA  256 (462)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (462)
                      .     ...++.                    . +                 ...++..+..-++++++++..+....+.
T Consensus       215 ~-----~~~~~~--------------------~-~-----------------~~~~~~l~~~~~l~~~~~ml~L~~~f~~  251 (461)
T KOG3098|consen  215 V-----VNCKSS--------------------S-E-----------------TSFSELLKLTFKLLKTPKMLLLFPFFFY  251 (461)
T ss_pred             h-----hhhhhh--------------------c-c-----------------ccHHHHHHHHHHHhcCHhHHHHHHHHHH
Confidence            0     000000                    0 0                 0111112334456677777777665555


Q ss_pred             HHHHHHHHHHHhhHHHHHH--hCCCcchh--hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHH
Q 012500          257 YNFVIGAYSYWGPKAGYNI--YHMSNADM--MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA  332 (462)
Q Consensus       257 ~~~~~~~~~~~~p~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (462)
                      .++.........|.-+.-.  .+.+....  ......+++.+++....+.+.+|..+...+  +.+.....+....+.+.
T Consensus       252 tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~--~~~~~~~~~~~~~~~li  329 (461)
T KOG3098|consen  252 TGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRK--PTVLIGIIIHLIGFLLI  329 (461)
T ss_pred             HHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccC--cchhHHHHHHHHHHHHH
Confidence            5555544555555533332  22232222  223445666677777777777776543222  44444443333333332


Q ss_pred             HHh------------------hhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhH
Q 012500          333 FCL------------------SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPL  394 (462)
Q Consensus       333 ~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  394 (462)
                      ...                  ++.....+...+.|++........++.+...+ |+.|..+.++.- ....+++.++-..
T Consensus       330 ~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~k-fyq~~~s~v~~f~  407 (461)
T KOG3098|consen  330 HLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFK-FYQSVASCVAFFF  407 (461)
T ss_pred             hccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHH-HHHHHHHHHHhhh
Confidence            211                  12345666777788888888888888888888 777888888884 3333355544433

>TIGR00897 2A0118 polyol permease family

Probab=99.20  E-value=1.8e-10  Score=108.41  Aligned_cols=150  Identities=16%  Similarity=0.038  Sum_probs=113.7

Q ss_pred             HhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHH-HHHHHHHHHHHhhh-----ccchhHH
Q 012500           15 ILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIG-VGLSVWTFATAGCG-----SSFDFWS   87 (462)
Q Consensus        15 ~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~-~~~~~~~~~~~~~~-----~~~~~~~   87 (462)
                      ..|.+.++   .+.+..+.+.  ..+...++..++.+..|++ ||+|||+.+. .+.+..+++.+...     ..++.+.
T Consensus       244 ~~p~~~~~---~g~s~~~~~~--~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~  318 (402)
T TIGR00897       244 FLPMFVAE---LGFSTSEWLQ--IWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAV  318 (402)
T ss_pred             HHHHHHHH---cCCChhHHHH--HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHH
Confidence            36766654   5666666544  7778889999999999999 9999998764 33333333333322     2346777


Q ss_pred             HHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHH
Q 012500           88 IAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVL  167 (462)
Q Consensus        88 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~  167 (462)
                      +++..++.|++.+...+ ....+.|..| ++|++++|+.+....+|..++|.+++.+.+..||+..|++.+++.++..++
T Consensus       319 ~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~  396 (402)
T TIGR00897       319 ALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFL  396 (402)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence            77888889988876554 3456677655 689999999999999999999999999999999999999998887776666


Q ss_pred             Hhhc
Q 012500          168 AFVI  171 (462)
Q Consensus       168 ~~~~  171 (462)
                      ..+.
T Consensus       397 ~~~~  400 (402)
T TIGR00897       397 TAFI  400 (402)
T ss_pred             HHHh
Confidence            5543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.20  E-value=3.6e-10  Score=105.77  Aligned_cols=147  Identities=12%  Similarity=-0.012  Sum_probs=105.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHH
Q 012500          245 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  323 (462)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  323 (462)
                      |.++...+..++............+.+..+ .+.++... .......+...+..++.|++.||++||     +.+..+..
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr-----~vl~~~~~   76 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIALLKE-LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKG-----RVMFIANG   76 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCc-----hhhHHHHH
Confidence            455666666666666554455545555444 45554444 444677788899999999999999999     77776666


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhh
Q 012500          324 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  401 (462)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~  401 (462)
                      +.....+......+.   +...++.+++.+...+...+.+.+.+|+++|++++|+.+..... +.++||.++|++.+.
T Consensus        77 ~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~-~~~~Gp~lgG~l~~~  150 (393)
T PRK11195         77 IKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIA-AILLGTVLGGALADP  150 (393)
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            555444433333332   34445678888888888899999999999999999999655554 889999999999985

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.20  E-value=4.1e-10  Score=105.22  Aligned_cols=167  Identities=15%  Similarity=0.011  Sum_probs=124.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHH
Q 012500          245 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  323 (462)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  323 (462)
                      +.++......+............+|.+.+ .+|.+..+. ...+...++..++.++.|++.||+|||     +.+..+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~   76 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAH-DVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLK-----HILLFLVA   76 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHH-HcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccH-----HHHHHHHH
Confidence            34455555566666666666677776554 477776555 455778899999999999999999998     88877777


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhc
Q 012500          324 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  403 (462)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g  403 (462)
                      +......+....++.+..++.-++.|++.+...+.......+..++++|+++.+........ +..++|.+.+.+.+..+
T Consensus        77 ~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~l~~~l~~~~g  155 (382)
T PRK10091         77 LCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTV-ANLLGIPLGTYLSQEFS  155 (382)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHH-HHHHhccHHHHHhhhcc
Confidence            77777777777778888887778888877766666666677778888899999998555444 88889999999888765


Q ss_pred             chhHHHHHHHHHHHHH
Q 012500          404 NWRKTTLALTSIFFLA  419 (462)
Q Consensus       404 ~~~~~~~~~~~~~~~~  419 (462)
                       |+..+...+...+..
T Consensus       156 -wr~~f~~~~~~~~~~  170 (382)
T PRK10091        156 -WRYTFLLIAVFNIAV  170 (382)
T ss_pred             -HHHHHHHHHHHHHHH
Confidence             888777766654433

>PRK11043 putative transporter; Provisional

Probab=99.20  E-value=5.6e-10  Score=105.19  Aligned_cols=155  Identities=16%  Similarity=0.077  Sum_probs=108.6

Q ss_pred             HHHHHHHHhhHH--HHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhh
Q 012500          260 VIGAYSYWGPKA--GYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS  336 (462)
Q Consensus       260 ~~~~~~~~~p~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (462)
                      .......+.|.+  +.+.++.++... ...+...++..++.++.|+++||++||     +.+..+..+.....+.....+
T Consensus        18 ~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~~~~~~~~~   92 (401)
T PRK11043         18 GFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRK-----PVLLAGLSLFALGSLGMLWVE   92 (401)
T ss_pred             HHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCc-----HHHHHHHHHHHHHHHHHHHhc
Confidence            333444555544  456678876655 445777888899999999999999999     777766666666555555556


Q ss_pred             hhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHH
Q 012500          337 SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIF  416 (462)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  416 (462)
                      +.+...+...+.+++.+...+.......+.+++++++...+..+..... +..++|.+.+++.+..| |+..++......
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~i~~~l~~~~g-~~~~~~~~~~~~  170 (401)
T PRK11043         93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVAL-SPALAPLLGAWLLNHFG-WQAIFATLFAIT  170 (401)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCC-hHHHHHHHHHHH
Confidence            6666666666666665555555556677888888888888887555554 88899999999998765 777777666554


Q ss_pred             HHHHH
Q 012500          417 FLAAG  421 (462)
Q Consensus       417 ~~~~~  421 (462)
                      ++..+
T Consensus       171 ~~~~~  175 (401)
T PRK11043        171 LLLIL  175 (401)
T ss_pred             HHHHH
Confidence            44433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.19  E-value=4.6e-10  Score=105.40  Aligned_cols=160  Identities=15%  Similarity=0.059  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHH
Q 012500          254 YIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA  332 (462)
Q Consensus       254 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (462)
                      ..............+|.+.++ .+.++... ...+...++..++.++.|+++||+|||     +.+..+.....+.....
T Consensus        12 ~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r-----~~l~~~~~~~~i~~~~~   85 (392)
T PRK10473         12 VLLYPAGIDMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRK-----PVAIPGAALFIIASLLC   85 (392)
T ss_pred             HHHHHHHHHHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCCh-----HHHHHHHHHHHHHHHHH
Confidence            333444444555667766555 67776555 444667788888999999999999998     77777766666666665


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHH
Q 012500          333 FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLAL  412 (462)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~  412 (462)
                      ...++.+..++...+.+.+.+...+.....+.+..|+++|+++.+..+..... +..++|.+.+.+.+..+ |+..+++.
T Consensus        86 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i-~~~~~~~i~~~l~~~~g-~~~~~~~~  163 (392)
T PRK10473         86 SLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCI-IPVLAPVLGHLIMLKFP-WQSLFYTM  163 (392)
T ss_pred             HHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcC-hHHHHHHH
Confidence            55566666666666677777666667777888889999999999999766555 78889988888877654 77766666


Q ss_pred             HHHHHHHHH
Q 012500          413 TSIFFLAAG  421 (462)
Q Consensus       413 ~~~~~~~~~  421 (462)
                      +.+.++...
T Consensus       164 ~~~~~i~~~  172 (392)
T PRK10473        164 AAMGILVLL  172 (392)
T ss_pred             HHHHHHHHH
Confidence            655444333

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.19  E-value=6e-11  Score=114.63  Aligned_cols=148  Identities=10%  Similarity=0.007  Sum_probs=108.9

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccc--h-hH-HHHHHHHHhhcccc
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSF--D-FW-SIAICRMLVGVGEA  100 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~--~-~~-~l~~~r~l~G~~~g  100 (462)
                      .+.+......  ......+..+++.++.+++ ||+|||++++.+.++.+++.++.+...  + .+ ....+-++.+.+.+
T Consensus       301 ~g~~~~~~~~--~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  378 (479)
T PRK10077        301 LGASTDIALL--QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFA  378 (479)
T ss_pred             cCCCCchHHH--HHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHh
Confidence            4555443333  5566777888999999999 999999999999999888887765431  1 11 22223344444443


Q ss_pred             c-ccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHH------hhcccchHHHHHHHHHHHHHHHHHHhhccc
Q 012500          101 S-FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV------VGSHLNWRYAFWGEAILMLPFAVLAFVIKP  173 (462)
Q Consensus       101 ~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~------l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p  173 (462)
                      . ..|....++.|.+|+++|++++++......+|..+++.+.+.      +.++.+|++.|++.++++++..++.+++.|
T Consensus       379 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (479)
T PRK10077        379 MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP  458 (479)
T ss_pred             ccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccc
Confidence            3 336678999999999999999999999999999888665544      346788999999998888777777777767


Q ss_pred             cc
Q 012500          174 LQ  175 (462)
Q Consensus       174 ~~  175 (462)
                      |+
T Consensus       459 e~  460 (479)
T PRK10077        459 ET  460 (479)
T ss_pred             cC
Confidence            64

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.18  E-value=1.3e-09  Score=104.74  Aligned_cols=151  Identities=14%  Similarity=0.094  Sum_probs=98.5

Q ss_pred             HHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHH
Q 012500          263 AYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGF  341 (462)
Q Consensus       263 ~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (462)
                      ....+.|. +.+.+|.+..+. ...+...++..++.++.|+++||+|+|     +.+..+.++..+..+.....++.+..
T Consensus        54 ~~~~~~~~-l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r-----~~~~~~~~~~~~~~~~~~~~~s~~~l  127 (476)
T PLN00028         54 AAAPLLPI-IRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPR-----YGSAFLLMLTAPAVFCMSLVSSATGF  127 (476)
T ss_pred             HHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-----HHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            33344444 455678886655 334666778888999999999999998     77766666665555555555566655


Q ss_pred             HHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhh--------hcchhHHHHHHH
Q 012500          342 LALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH--------VNNWRKTTLALT  413 (462)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~--------~g~~~~~~~~~~  413 (462)
                      ++..++.|++.+.. .+....+.+.+|+++|+++.|+.+...+. |..+++.+.+.+.+.        ..+|+..+++.+
T Consensus       128 ~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~-g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g  205 (476)
T PLN00028        128 IAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNL-GGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPG  205 (476)
T ss_pred             HHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHH
Confidence            55555666655543 33444567788889999999998655454 666666665554331        124888887776


Q ss_pred             HHHHHHHH
Q 012500          414 SIFFLAAG  421 (462)
Q Consensus       414 ~~~~~~~~  421 (462)
                      ++.++..+
T Consensus       206 ~l~l~~~l  213 (476)
T PLN00028        206 LLHIIMGI  213 (476)
T ss_pred             HHHHHHHH
Confidence            66544433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.18  E-value=6.4e-11  Score=111.33  Aligned_cols=142  Identities=8%  Similarity=-0.038  Sum_probs=110.3

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHH--Hhhhc--cchhHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFAT--AGCGS--SFDFWSIAI   90 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~--~~~~~--~~~~~~l~~   90 (462)
                      .|.+.+++  ++.++.+.+.  ......++..++.++.|++ ||+|||+.+..+..+..+..  +...+  .++.+.++.
T Consensus       242 ~~~~~~~~--~g~~~~~~~~--~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (394)
T TIGR00883       242 LPTYLTQT--LGLSANSALL--VLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFF  317 (394)
T ss_pred             HHHHHHHh--cCCChhHHHH--HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            56666544  4566666444  7788888999999999999 99999998775554444333  22222  356777778


Q ss_pred             HHHHhhcccccccccccchhcccCCCCCchhHHHH-HHhhhhhhhhhhhhHHHHhhcccc-hHHHHHHHHHHH
Q 012500           91 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILM  161 (462)
Q Consensus        91 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~~~~  161 (462)
                      ..++.|++.+...+...+++.|.+|+++|++++++ ++.+..+|..++|.+++.+.++.| |+..++...+..
T Consensus       318 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       318 LVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence            88999999888899999999999999999999998 456667899999999999999888 988877776543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.18  E-value=6.5e-10  Score=107.40  Aligned_cols=165  Identities=15%  Similarity=0.108  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHH
Q 012500          248 VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  326 (462)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  326 (462)
                      ....+..++...-...+..-+|.+..+ +|.++.+. .....+.++...+.+..|+++||+|||     +.+..+..+..
T Consensus         9 ~~~~~~~~~~~ld~tiv~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk-----~~l~~~~~~~~   82 (495)
T PRK14995          9 VIIVLVYIPVAIDATVLHVAAPTLSMT-LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFK-----RLLMLGGTLFG   82 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHHHHHHH
Confidence            344444555555566677778877655 67765444 445667778888889999999999999     88888887777


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccC-CcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcch
Q 012500          327 ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSV-KPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNW  405 (462)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~  405 (462)
                      +..+.....++.+..++.-.+.|++.+...+.....+.+.+ |+++|+++.|+.....+. |..++|.+.|++.++.| |
T Consensus        83 ~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~-g~~~gp~lgg~l~~~~g-w  160 (495)
T PRK14995         83 LASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSG-GAAFGPLVGGILLEHFY-W  160 (495)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccCC-h
Confidence            77777777778888887777888887776666566565665 568999999999655555 99999999999999865 8


Q ss_pred             hHHHHHHHHHHHHHH
Q 012500          406 RKTTLALTSIFFLAA  420 (462)
Q Consensus       406 ~~~~~~~~~~~~~~~  420 (462)
                      ++.|++...+.++..
T Consensus       161 r~~f~i~~~~~~~~~  175 (495)
T PRK14995        161 GSVFLINVPIVLVVM  175 (495)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888877665544433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.18  E-value=1.6e-09  Score=103.49  Aligned_cols=146  Identities=14%  Similarity=0.100  Sum_probs=97.6

Q ss_pred             HHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHh----hhh
Q 012500          264 YSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL----SSL  338 (462)
Q Consensus       264 ~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  338 (462)
                      +....|. +.+. +.++.+. ...+...++..++.++.|+++||+|+|     +.+..+..+..+..+.....    .+.
T Consensus        48 ~~~~~p~-l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k-----~~l~~~~~~~~i~~~~~~~~~~~~~~~  120 (452)
T PRK11273         48 FALAMPY-LVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR-----VFLPAGLILAAAVMLFMGFVPWATSSI  120 (452)
T ss_pred             HHHhhHH-HHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCc-----hhHHHHHHHHHHHHHHHHhhhcccccH
Confidence            4455664 4555 7776555 444778888899999999999999999     77766666555554444332    244


Q ss_pred             HHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhcc-ccchhHHHHHHhhhcchhHHHHHHHHHHH
Q 012500          339 YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGD-VPSSPLVGVLQDHVNNWRKTTLALTSIFF  417 (462)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  417 (462)
                      +..++...+.+++.+...++....+.+.+|+++|+++.++.+...+. |. ..+|.+...+. ...+|+..+++.+...+
T Consensus       121 ~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~~~~-~~~gw~~~f~i~~~~~~  198 (452)
T PRK11273        121 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV-GGGLPPLLFLLGMA-WFNDWHAALYMPAFAAI  198 (452)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHH-HhccHHHHHHHHHHHHH
Confidence            45555566677777777676667778888899999999998766666 54 44554332332 22457777776655444


Q ss_pred             H
Q 012500          418 L  418 (462)
Q Consensus       418 ~  418 (462)
                      +
T Consensus       199 ~  199 (452)
T PRK11273        199 L  199 (452)
T ss_pred             H
Confidence            4

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.18  E-value=7.1e-10  Score=105.44  Aligned_cols=157  Identities=12%  Similarity=0.076  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHH
Q 012500          248 VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  326 (462)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  326 (462)
                      ....+..+.............|. +.+.+|.++.+. ...+...++..++.++.|+++||+|||     +.+..+.....
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r-----~~l~~~~~~~~   94 (426)
T PRK12307         21 FSAWLGYVFDGFDFMLIFYIMYL-IKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRK-----PLMMWSIVAYS   94 (426)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-----HHHHHHHHHHH
Confidence            33334344444444444444554 455678886555 445777888899999999999999999     88887777777


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchh
Q 012500          327 ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWR  406 (462)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~  406 (462)
                      +........++.+..++.-.+.|++.+...+....++.+..|+++|+++.++....... |.++++.+.+.+.+..+ |+
T Consensus        95 ~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l-g~~~~~~l~~~l~~~~~-w~  172 (426)
T PRK12307         95 VGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGI-GNIIAAYFMPSFAEAYG-WR  172 (426)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhH-HHHHHHHHHHHHcccCC-HH
Confidence            77766666777777777778888888877777888888999999999999998655555 88888888888877655 77


Q ss_pred             HHHHHH
Q 012500          407 KTTLAL  412 (462)
Q Consensus       407 ~~~~~~  412 (462)
                      ..+++.
T Consensus       173 ~~f~i~  178 (426)
T PRK12307        173 AAFFVG  178 (426)
T ss_pred             HHHHHH
Confidence            777654

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.17  E-value=9.2e-10  Score=102.68  Aligned_cols=148  Identities=10%  Similarity=0.052  Sum_probs=103.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHH
Q 012500          244 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  322 (462)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  322 (462)
                      +|.++...+................+.+-++.+++++.+. .+.+++.+...+.++..|++.||+|.|     +++..+.
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R-----~v~~~~~  107 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGR-----RWTVFST  107 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-----HHHHHHH
Confidence            4566666665555555555555555555555689997776 455778888888899999999999998     7777776


Q ss_pred             HHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHH
Q 012500          323 FLGAISCLTAFCL-----SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGV  397 (462)
Q Consensus       323 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~  397 (462)
                      .+..+..+.....     ++.+..++.-++.|++ +..+++....+.+.+|+++||++.|+.. ..+.+|..+++.+.+.
T Consensus       108 ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~-g~G~~G~~l~~~l~p~  185 (462)
T PRK15034        108 AILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGING-GLGNLGVSVMQLVAPL  185 (462)
T ss_pred             HHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHH-HHHhhHHHHHHHHHHH
Confidence            6666655555543     5666777777777776 5567777888888899999999999995 3333366656555544


Q ss_pred             H
Q 012500          398 L  398 (462)
Q Consensus       398 l  398 (462)
                      +
T Consensus       186 ~  186 (462)
T PRK15034        186 V  186 (462)
T ss_pred             H
Confidence            3

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.15  E-value=4.6e-10  Score=108.68  Aligned_cols=164  Identities=14%  Similarity=0.093  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHH
Q 012500          250 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS  328 (462)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  328 (462)
                      ..+..+.............|.+.++ +|.++... ...+...++..++.++.|++.||+|||     +.+..+..+..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~   80 (485)
T TIGR00711         7 LMLGTFMAVLDSTIVNVAIPTIAGD-LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTR-----RLFLISTFAFTLG   80 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcH-----HHHHHHHHHHHHH
Confidence            3344444455555566667766555 67775554 455778888999999999999999998     7777777777777


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHH
Q 012500          329 CLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKT  408 (462)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~  408 (462)
                      .......++.+..++..++.+++.+...+....++.+.+|+++|+++.++.+..... |..++|.+.+++.++.+ |+..
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~~-w~~~  158 (485)
T TIGR00711        81 SLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLV-APALGPTLGGWIIENYH-WRWI  158 (485)
T ss_pred             HHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-HhhhhhccHhHhccCcC-ceeh
Confidence            666666677777778888888888877788888899999999999999999655555 89999999999998765 7777


Q ss_pred             HHHHHHHHHHHHH
Q 012500          409 TLALTSIFFLAAG  421 (462)
Q Consensus       409 ~~~~~~~~~~~~~  421 (462)
                      ++......++...
T Consensus       159 f~~~~~~~~~~~~  171 (485)
T TIGR00711       159 FLINVPIGIIVVV  171 (485)
T ss_pred             hhhhhHHHHHHHH
Confidence            7766555444333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.14  E-value=6e-10  Score=104.09  Aligned_cols=149  Identities=15%  Similarity=0.145  Sum_probs=113.1

Q ss_pred             HHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHH
Q 012500          263 AYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGF  341 (462)
Q Consensus       263 ~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (462)
                      .....+|.+.++ +|.++.+. ...+...++..++.++.|++.||+|||     +.+..+..+...........++.+..
T Consensus         9 ~~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~   82 (377)
T PRK11102          9 MYLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRK-----PVILGGTLVFALAAVACALAQTIDQL   82 (377)
T ss_pred             HHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCCh-----HHHHHHHHHHHHHHHHHHHHccHHHH
Confidence            344556666655 67876655 445777888899999999999999998     77777777766666666666677777


Q ss_pred             HHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHHHHH
Q 012500          342 LALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLA  419 (462)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  419 (462)
                      .....+.+++.+...+.....+.+..|+++|+++.++.+..... |..++|.+.+.+.+..+ |+..++..+...++.
T Consensus        83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~  158 (377)
T PRK11102         83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTI-APLLAPIIGGWLLVWFS-WHAIFWVLALAAILA  158 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHH
Confidence            77777778777777777788888888889999999999755555 88999999999998765 777766655554443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.14  E-value=3.2e-10  Score=105.96  Aligned_cols=141  Identities=13%  Similarity=0.070  Sum_probs=117.2

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML   94 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l   94 (462)
                      .|.+.++   .+.++.+.+.  ..+...++.++..++.|++ ||+|+|+.+..+.+..+++.++.+++++.+.+++..++
T Consensus       228 ~~~~~~~---~g~s~~~~g~--~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  302 (382)
T PRK11128        228 SAIYWQA---AGYSASTIGY--LWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQIL  302 (382)
T ss_pred             HHHHHHH---CCCCHhHHHH--HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            4555543   5677666555  7778888899999999999 99999999999999999988888899999999999999


Q ss_pred             hhcccccccccccchhcccCCCCCchhHHHHHH-hhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHH
Q 012500           95 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFY-MCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLP  163 (462)
Q Consensus        95 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~  163 (462)
                      .|++.+...+....++.+. +++++++..+..+ ....+|..+||.++|.+.+.+|+ ..|+..+++.++
T Consensus       303 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~  370 (382)
T PRK11128        303 HCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALP  370 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence            9999998888888888887 5567789899886 55677889999999999999988 466666655543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.13  E-value=1.2e-09  Score=102.59  Aligned_cols=152  Identities=11%  Similarity=0.049  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhh
Q 012500          258 NFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS  336 (462)
Q Consensus       258 ~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (462)
                      ..........+|.+. +.++.++... ...+...++..++.++.|+++||+|||     +.+..+........+.....+
T Consensus        21 ~~~~~~~~p~~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr-----~~~~~~~~~~~~~~~~~~~~~   94 (394)
T PRK11652         21 QMAQTIYVPAIADMA-RDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRR-----PVILVGMSIFILGTLVALFAH   94 (394)
T ss_pred             HHHHHHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh-----HHHHHHHHHHHHHHHHHHHHc
Confidence            333333444455554 4577776555 445777888899999999999999998     777766666666555555556


Q ss_pred             hhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHH
Q 012500          337 SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIF  416 (462)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  416 (462)
                      +.+..++...+.+++.+...+.......+..++++++.+.+..+..... +..++|.+.+.+.+..| |+..+.+.+...
T Consensus        95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~i~~~l~~~~g-~~~~f~~~~~~~  172 (394)
T PRK11652         95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILV-SPLLAPLIGGLLTTLFG-WRACYLFLLLLG  172 (394)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence            6666666666666666554444455566667778899999888655544 88889999999888765 777777665544


Q ss_pred             H
Q 012500          417 F  417 (462)
Q Consensus       417 ~  417 (462)
                      +
T Consensus       173 ~  173 (394)
T PRK11652        173 A  173 (394)
T ss_pred             H
Confidence            3

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.13  E-value=2e-08  Score=92.75  Aligned_cols=326  Identities=13%  Similarity=0.105  Sum_probs=176.6

Q ss_pred             hhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhc------c--c-------hhHHHHHHHHHhhccc
Q 012500           36 SVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGS------S--F-------DFWSIAICRMLVGVGE   99 (462)
Q Consensus        36 s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~------~--~-------~~~~l~~~r~l~G~~~   99 (462)
                      +.....-.+..++.++..|++ ||..|.+++..+.+.--++..+.+.      .  +       -...+++.-.+.|.-.
T Consensus        41 siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~  120 (432)
T PF06963_consen   41 SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIE  120 (432)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHH
Confidence            446667777888999999999 9999999877765544333322221      1  1       1112222222222211


Q ss_pred             c-cccccccchhcccC------CCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhcc
Q 012500          100 A-SFISLAAPFIDDNA------PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  172 (462)
Q Consensus       100 g-~~~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  172 (462)
                      - .......++=.||.      +++++.+.++...-.=.+..+++|++.|.+.+..+.+....+.++..++...+-+++.
T Consensus       121 ~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l  200 (432)
T PF06963_consen  121 RLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLL  200 (432)
T ss_pred             HHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 12222333445664      3445667777777777788999999999999988999888888887777666655554


Q ss_pred             ccc---cCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHH
Q 012500          173 PLQ---LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV  249 (462)
Q Consensus       173 p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (462)
                      ..-   .+....+++++..+.          +++++       +..+..++....+...+..+...++++..++.+.+..
T Consensus       201 ~~VY~~~P~L~~~~~~~~~~~----------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vfla  263 (432)
T PF06963_consen  201 ARVYNSVPALAVKKRSSESES----------SSDEE-------SSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLA  263 (432)
T ss_pred             HHHHHhChHhcCCCCCccccc----------ccccc-------ccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHH
Confidence            211   111111111110000          00000       0000000000001111222333455667777775555


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHH---HH
Q 012500          250 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF---LG  325 (462)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~---~~  325 (462)
                      .+. ..+.++..-++...+..|+.+. |.++... .+-....+.++.++++..++.+|+|..     +.-..+..   .+
T Consensus       264 s~a-lalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlv-----r~G~~~l~~q~~~  336 (432)
T PF06963_consen  264 SFA-LALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLV-----RAGLWSLWWQWVC  336 (432)
T ss_pred             HHH-HHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----hhHHHHHHHHHHH
Confidence            444 4444444445566677788876 7776555 334777888899999999999999976     33322222   22


Q ss_pred             HHHHHHHHHhhh-------hHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhh
Q 012500          326 AISCLTAFCLSS-------LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHI  385 (462)
Q Consensus       326 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (462)
                      ...+....+.+.       ....+..+.+.=++.-+.=-...-++.+.+|+++||+..|+-+...+.
T Consensus       337 L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~l  403 (432)
T PF06963_consen  337 LALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSL  403 (432)
T ss_pred             HHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHH
Confidence            222222222221       112222222222222222334466777889999999999999766665

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK09952 shikimate transporter; Provisional

Probab=99.12  E-value=6.6e-10  Score=105.62  Aligned_cols=152  Identities=11%  Similarity=0.030  Sum_probs=107.5

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhc---c-chhHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGS---S-FDFWSIAI   90 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~---~-~~~~~l~~   90 (462)
                      .|.+.++.  ++.++.....  ......+...++.++.|++ ||+|||+++..+.++..++.+....   . ++.+.+++
T Consensus       273 ~~~y~~~~--~g~s~~~~~~--~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (438)
T PRK09952        273 ALNYSTQN--LGLPRELFLN--IGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFF  348 (438)
T ss_pred             HHHHHHHh--cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            55555544  4555543222  4445566667888999999 9999999998887766555433322   2 23444455


Q ss_pred             HHHHhhcccccccccccchhcccCCCCCchhHHHHHH-hhhhhhhhhhhhHHHHhhccc--chHHHHHHHHHHHHHHHHH
Q 012500           91 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFY-MCIPTGVALGYVYGGVVGSHL--NWRYAFWGEAILMLPFAVL  167 (462)
Q Consensus        91 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~--gwr~~f~~~~~~~~~~~~~  167 (462)
                      ..++.|++.+...+...+++.|.+|.+.|+...++.. .+..+|..++|.+.+++.+..  +|+..+...++..++..+.
T Consensus       349 ~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~  428 (438)
T PRK09952        349 SIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMT  428 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence            6677788888778888899999999999998888854 445589999999999998743  4888888877777666555


Q ss_pred             Hhhc
Q 012500          168 AFVI  171 (462)
Q Consensus       168 ~~~~  171 (462)
                      .+..
T Consensus       429 ~~~~  432 (438)
T PRK09952        429 ALLM  432 (438)
T ss_pred             HHHc
Confidence            5433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.12  E-value=1.2e-09  Score=100.83  Aligned_cols=152  Identities=10%  Similarity=-0.050  Sum_probs=103.7

Q ss_pred             HHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhH
Q 012500          261 IGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLY  339 (462)
Q Consensus       261 ~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (462)
                      ...+...+|.+.+ +++.++.+. ...+...++..++.+..|++.||+|||     +.+.................++.+
T Consensus         7 ~~~~~~~lp~i~~-~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr-----~~~~~~~~~~~~~~~~~~~~~~~~   80 (368)
T TIGR00903         7 WVTFSPVLSLVAE-DIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKR-----WFLFGSLATFAAAAGRLLDPFNYE   80 (368)
T ss_pred             HHHHHhhHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch-----HHHHHHHHHHHHHHHHHHHhccHH
Confidence            3444555665544 578887665 445777888899999999999999987     655444433333322222224566


Q ss_pred             HHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHHHHH
Q 012500          340 GFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLA  419 (462)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  419 (462)
                      ..++.-++.|++.+.. .+......+.+|+++|+++.++.+..... |..+++.+.+++.+..| |+..++..+.+.++.
T Consensus        81 ~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~l-G~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~~  157 (368)
T TIGR00903        81 WLLACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYL-GIIFALAAGLKIYTAGG-LQLLIIPIAAVAAAG  157 (368)
T ss_pred             HHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHH
Confidence            6666667777776643 34444557889999999999999655555 99999999999988765 888887766654444


Q ss_pred             HH
Q 012500          420 AG  421 (462)
Q Consensus       420 ~~  421 (462)
                      .+
T Consensus       158 ~~  159 (368)
T TIGR00903       158 II  159 (368)
T ss_pred             HH
Confidence            33

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.11  E-value=5.1e-09  Score=96.17  Aligned_cols=131  Identities=13%  Similarity=0.035  Sum_probs=108.8

Q ss_pred             hhHHHHHHhCCCcch-h-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 012500          268 GPKAGYNIYHMSNAD-M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALF  345 (462)
Q Consensus       268 ~p~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (462)
                      ...++.+.+|++..+ . .+......+..+..+.+|++.||+|.|     +.+....+.-.+...+..+.++...+.+.-
T Consensus        48 a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K-----~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R  122 (511)
T TIGR00806        48 ITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK-----PVLVLQALSFVCVWLLLLLGTSVWHMQLME  122 (511)
T ss_pred             HHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334666689999776 4 555778889999999999999999999     888888888888777777777888888888


Q ss_pred             HHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhH
Q 012500          346 TVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRK  407 (462)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  407 (462)
                      ++.|++.+..+ ....++.+-+|+++|+++.|+.+..... |.++++++.+++ ...| |+.
T Consensus       123 ~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~v-G~~Ia~~L~qll-~s~g-Wr~  180 (511)
T TIGR00806       123 VFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLL-GVFLSSVLGQLL-VTLG-WIS  180 (511)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HhcC-chh
Confidence            99999999888 8888999999999999999999877666 999999999984 4444 443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.09  E-value=3.9e-09  Score=99.18  Aligned_cols=145  Identities=9%  Similarity=0.021  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHH
Q 012500          248 VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  326 (462)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  326 (462)
                      .......+...+.........|.+ ++.++.+..+. ...+...++..++.+..|++.||+|+|     +.+..+..+.+
T Consensus         6 ~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r-----~~~~~g~~l~~   79 (410)
T TIGR00885         6 ALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYK-----AGILLGLFLYA   79 (410)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHH
Confidence            334444455555554555666655 66788887665 455778889999999999999999999     77777777666


Q ss_pred             HHHHHHHH---hhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHH
Q 012500          327 ISCLTAFC---LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ  399 (462)
Q Consensus       327 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~  399 (462)
                      ........   .++.+..++..++.+++.+...+..+.+..+..|++++++..++.+...+. |..++|.+.+.+.
T Consensus        80 ~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-G~~~g~~i~~~l~  154 (410)
T TIGR00885        80 LGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPF-GSIIGMVVAQQLI  154 (410)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            65554322   235666677778888888888888888888888888999999999766665 9999998888775

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.09  E-value=2.4e-09  Score=101.01  Aligned_cols=147  Identities=12%  Similarity=0.028  Sum_probs=104.5

Q ss_pred             HHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 012500          266 YWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLAL  344 (462)
Q Consensus       266 ~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (462)
                      ..+|.+. +.++.++... ...+...++..++.++.|+++||+|||     +.+..+..+...........++.+..+..
T Consensus        34 ~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r-----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  107 (406)
T PRK15402         34 PGMLAVV-EDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRR-----PVMLAGVAFFILTCLAILLAQSIEQFTLL  107 (406)
T ss_pred             cchHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-----HHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            3444443 5577776555 344677888889999999999999999     77777766666666655556666666666


Q ss_pred             HHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHHHHHH
Q 012500          345 FTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAA  420 (462)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  420 (462)
                      ..+.+.+.+...+.....+.+.+|++.|.++.++....... +..++|.+.+.+.+..+ |+..+++.+++.++..
T Consensus       108 ~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~i~~~l~~~~~-w~~~~~~~~~~~~~~~  181 (406)
T PRK15402        108 RFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALL-APLLGPLVGAALIHVLP-WRGMFVLFAALAALSF  181 (406)
T ss_pred             HHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHHH
Confidence            66666666655555666777888888888888888544444 78889999999888655 7777776665544433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.07  E-value=2.6e-10  Score=102.46  Aligned_cols=154  Identities=11%  Similarity=0.116  Sum_probs=126.1

Q ss_pred             HHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 012500          273 YNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELL  351 (462)
Q Consensus       273 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (462)
                      ++.++.++... .+.....+...+.++++|++.||++|+     .++..+..+-....+...+..+.|...++=.+.|++
T Consensus        60 ~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~-----~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiG  134 (493)
T KOG1330|consen   60 QTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRK-----RVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIG  134 (493)
T ss_pred             HHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcc-----eEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            44567776554 556788889999999999999999998     777777766666666666667888888888999999


Q ss_pred             HHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012500          352 VFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKS  431 (462)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (462)
                      .....+..++++.|.+|.++|++..++.+..... |..+|-.....+.+..+.|++++...+++.++..++.++....|+
T Consensus       135 eAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipv-GsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~  213 (493)
T KOG1330|consen  135 EASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPV-GSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPE  213 (493)
T ss_pred             hhhhcccchhHhhhcCcchhhhHHHHHhhhhccc-ccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence            9999999999999999999999999999988877 888888888888888888999999888887777766665554454


Q ss_pred             c
Q 012500          432 I  432 (462)
Q Consensus       432 ~  432 (462)
                      |
T Consensus       214 r  214 (493)
T KOG1330|consen  214 R  214 (493)
T ss_pred             c
Confidence            4

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.07  E-value=7.4e-10  Score=104.12  Aligned_cols=135  Identities=8%  Similarity=0.032  Sum_probs=115.2

Q ss_pred             hhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccccccchhcccC
Q 012500           36 SVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA  114 (462)
Q Consensus        36 s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~  114 (462)
                      +...+...+...++.+..+++ ||+|||+.+.++.++.++...+...++|.+.+++.++++|++..........+..+..
T Consensus       257 g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  336 (396)
T TIGR00882       257 GYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQF  336 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            447777788888889999999 9999999999999999998888888899999999999999987766666666778888


Q ss_pred             CCCCchhHHHH-HHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhh
Q 012500          115 PVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  170 (462)
Q Consensus       115 ~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  170 (462)
                      |++.++...+. ++....+|..+++.++|++.+..||+..|.+.+++.++..+...+
T Consensus       337 ~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       337 DVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             CcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            87888877666 678899999999999999999999999999999887776665544

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.05  E-value=6.5e-09  Score=100.78  Aligned_cols=110  Identities=9%  Similarity=0.048  Sum_probs=84.7

Q ss_pred             hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHhccc
Q 012500          284 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS------LYGFLALFTVGELLVFATQA  357 (462)
Q Consensus       284 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  357 (462)
                      .+.+...++.+++.++.|++.||+|||     +.+....++..+...+....++      .+..++.-++.|++.+...+
T Consensus        60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~  134 (502)
T TIGR00887        60 AVNGSASIGTLAGQLFFGWLADKLGRK-----RVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYP  134 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccH-----HHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhH
Confidence            455777888999999999999999999     7776665555554444333332      45667777788888888888


Q ss_pred             cceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHH
Q 012500          358 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ  399 (462)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~  399 (462)
                      ....+..|.+|++.|+++.++.+..... |..+++.+...+.
T Consensus       135 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~-g~~~g~~~~~~~~  175 (502)
T TIGR00887       135 LSAIITSEFATKKWRGAMMAAVFAMQGF-GILAGAIVALIVL  175 (502)
T ss_pred             HHHHHHHHhcChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            8999999999999999999999655555 8888887766554

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.05  E-value=1.9e-09  Score=103.77  Aligned_cols=144  Identities=9%  Similarity=-0.010  Sum_probs=110.7

Q ss_pred             cccccccccchhhHH-HHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHh---hhcc-chhHHHHHHHHHhhccc
Q 012500           26 LSLRKLAAGSSVNVL-EFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAG---CGSS-FDFWSIAICRMLVGVGE   99 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~-~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~---~~~~-~~~~~l~~~r~l~G~~~   99 (462)
                      .+.+..+.+.  ... ...++.+++.++.|++ ||+|+|+.+..+.++.+++.+.   .+.. ++.+.+...-+++.+..
T Consensus       253 ~G~s~~~~g~--~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~  330 (491)
T PRK11010        253 VGFDAGEVGL--VNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCG  330 (491)
T ss_pred             cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            5777777555  664 5567889999999999 9999999887766655554432   2333 45555555666655555


Q ss_pred             ccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhc
Q 012500          100 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  171 (462)
Q Consensus       100 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  171 (462)
                      |...+...++..+..+++.+++..++.+...++|..+++.++|.+.+..||+..|.+.++++++..+...+.
T Consensus       331 g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        331 GMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            555566678888999999999999999999999999999999999999999999999988887776666554

>PRK15075 citrate-proton symporter; Provisional

Probab=99.05  E-value=1.3e-09  Score=103.61  Aligned_cols=132  Identities=9%  Similarity=-0.078  Sum_probs=93.6

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHh----hhccchhHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAG----CGSSFDFWSIAI   90 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~----~~~~~~~~~l~~   90 (462)
                      .|.+.++.  .+.+..+.+.  ....+.++.+++.++.|++ ||+|||+++..+.++..+....    ....+++....+
T Consensus       261 ~p~~l~~~--~g~~~~~~~~--~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (434)
T PRK15075        261 TPTFGKTV--LHLSAADSLL--VTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLA  336 (434)
T ss_pred             HHHHHHHh--cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence            67666654  3555555444  7778888899999999999 9999999887765444332211    112344444445


Q ss_pred             HHHHhhcccccccccccchhcccCCCCCchhHHHHHHh-hhhhhhhhhhhHHHHhhcccchH
Q 012500           91 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYM-CIPTGVALGYVYGGVVGSHLNWR  151 (462)
Q Consensus        91 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~~gwr  151 (462)
                      ..++.|++.+...+....++.|.+|+++|+..+++... +..++..++|.+.+++.++.|++
T Consensus       337 ~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        337 VELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            55666666666666667889999999999999998644 44445778999999999988864

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.04  E-value=7.1e-09  Score=97.76  Aligned_cols=142  Identities=12%  Similarity=0.097  Sum_probs=103.9

Q ss_pred             HHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 012500          272 GYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGEL  350 (462)
Q Consensus       272 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (462)
                      ..+.++.+.... ...+.+.++..++.++.|+++||+|||     +.+..+..+..+........++.+..++.-++.|+
T Consensus        42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr-----~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi  116 (413)
T PRK15403         42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRR-----PVLITGALIFTLACAATLFTTSMTQFLIARFIQGT  116 (413)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCch-----HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345577775554 445777888899999999999999999     77777776666666666666777777777677676


Q ss_pred             HHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHHHHHH
Q 012500          351 LVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAA  420 (462)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  420 (462)
                      +.+...+.......+.+++++++++.++.+..... +..++|.+.+.+.+..| |+..|+..++..++..
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~lg~~l~~~~g-w~~~f~~~~~~~~i~~  184 (413)
T PRK15403        117 SICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLV-APIIGPLSGAALMHFVH-WKVLFAIIAVMGLIAF  184 (413)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHH
Confidence            66544444455666778888899999998666655 88899989888887655 8888877766544443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.04  E-value=2.4e-09  Score=101.31  Aligned_cols=143  Identities=15%  Similarity=0.158  Sum_probs=125.0

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCc--hhHHHHHHHHHHHHHhhhc--------cchhHHHHHHHHH
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPF--RLIGVGLSVWTFATAGCGS--------SFDFWSIAICRML   94 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr--~~l~~~~~~~~~~~~~~~~--------~~~~~~l~~~r~l   94 (462)
                      ++++..+...  ......+...+++.+.|++ ||+|.|  +++..+++++.+..+...+        .++-+.+++.-++
T Consensus       312 lg~s~~~l~~--~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~  389 (477)
T PF11700_consen  312 LGMSTTQLIV--FGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVL  389 (477)
T ss_pred             cCcCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHH
Confidence            7888888666  8888889999999999999 999999  8999998888766666665        6788899999999


Q ss_pred             hhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccc-hHHHHHHHHHHHHHHHHHHhh
Q 012500           95 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFV  170 (462)
Q Consensus        95 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~  170 (462)
                      .|+..|..++...++.+|..|+++.+..+|++....-....+||++-+.+.+..| -|+.+....++.++..++.++
T Consensus       390 ~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  390 IGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF  466 (477)
T ss_pred             HHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999998876 788888777766555554433

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00898 2A0119 cation transport protein

Probab=99.03  E-value=2e-09  Score=104.67  Aligned_cols=136  Identities=9%  Similarity=-0.101  Sum_probs=108.9

Q ss_pred             hHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchh--HHHHHHHHHhhcccccccccccchhcccC
Q 012500           38 NVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDF--WSIAICRMLVGVGEASFISLAAPFIDDNA  114 (462)
Q Consensus        38 ~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~~~~~i~~~~  114 (462)
                      ......+..+++.++.+++ ||+|||+.+..+.++.+++.++..+.++.  +...+.-++.+++.+...+....+..|.+
T Consensus       360 ~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  439 (505)
T TIGR00898       360 DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY  439 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            3445566677888889999 99999999999999999888888776654  44555666777777777888889999999


Q ss_pred             CCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhcccccc
Q 012500          115 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  176 (462)
Q Consensus       115 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~  176 (462)
                      |++.|++++|+.+....+|.+++|.+.+ + +..++..++++.++..++..++.+ ++||+.
T Consensus       440 p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~-~lpet~  498 (505)
T TIGR00898       440 PTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTL-FLPETK  498 (505)
T ss_pred             cHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHH-cCcCCC
Confidence            9999999999999999999999999988 4 445678888888887777666554 447653

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.02  E-value=2.5e-09  Score=93.66  Aligned_cols=140  Identities=16%  Similarity=0.188  Sum_probs=100.0

Q ss_pred             hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhccccceee
Q 012500          284 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLAL-FTVGELLVFATQAPVNYV  362 (462)
Q Consensus       284 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  362 (462)
                      .+.+.+.++..+.++..|.++||+|||     ..+..+.+..++..++.....+. ..++. =++.| ...+......++
T Consensus        72 flGSsF~ilQ~~sS~~~G~~SD~yGRk-----pvll~c~~~va~s~ll~~~S~~F-~afv~aR~l~G-i~kgnl~v~rAi  144 (451)
T KOG2615|consen   72 FLGSSFSILQFISSPLWGCLSDRYGRK-----PVLLACLIGVALSYLLWALSRNF-AAFVLARFLGG-IFKGNLSVIRAI  144 (451)
T ss_pred             hHhhHHHHHHHHhhhhhhhhhhhhCch-----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhh-hccCchHHHHHH
Confidence            455788899999999999999999999     88887777777766666666666 33333 33333 344556678899


Q ss_pred             eeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHh---hhcchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012500          363 CLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD---HVNNWRKTTLALTSIFFLAAGIWFVGIFLKS  431 (462)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (462)
                      ++|.+++++|+.+++..+...+. |.++||.++|++..   ..|.+...+--+.++.....-+.....++||
T Consensus       145 isdV~sek~r~l~ms~v~~a~~l-GfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpE  215 (451)
T KOG2615|consen  145 ISDVVSEKYRPLGMSLVGTAFGL-GFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPE  215 (451)
T ss_pred             HHhhcChhhccceeeeeehhhhc-chhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999999999999766666 99999999999988   5566644443333333333323333345554

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.02  E-value=1.8e-09  Score=98.39  Aligned_cols=141  Identities=10%  Similarity=0.113  Sum_probs=124.7

Q ss_pred             chhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccccccchhccc
Q 012500           35 SSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDN  113 (462)
Q Consensus        35 ~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~  113 (462)
                      .|.+.+...+.-++...++.++ +|+|.|+.++++.+++.+=.+++++++|.+.+.+.+.+.|+-.+........|+++.
T Consensus       261 ~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~  340 (412)
T PF01306_consen  261 YGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAH  340 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4668888888888999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchhHHHH-HHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccc
Q 012500          114 APVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  175 (462)
Q Consensus       114 ~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~  175 (462)
                      +|+|-.++...+ .+.+.++|..+.+.++|.+.|+.|.+.+|++.+.+.++..++..+.++++
T Consensus       341 fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  341 FDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             S-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence            998887777777 47889999999999999999999999999999999888888888887543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.00  E-value=1.5e-06  Score=81.52  Aligned_cols=238  Identities=13%  Similarity=0.029  Sum_probs=139.4

Q ss_pred             chhhHHHHHHHHHhh-hhhhccc-cccCCchhHHHHHHHHHHHHHhhhcc----ch------------------------
Q 012500           35 SSVNVLEFTVTQLVC-SSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSS----FD------------------------   84 (462)
Q Consensus        35 ~s~~~~~~~~~~~~~-~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~----~~------------------------   84 (462)
                      ..++-+...+...+. .++.+++ +|++|++++-.....+.....++++.    ++                        
T Consensus        45 i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~  124 (472)
T TIGR00769        45 IPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIA  124 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHH
Confidence            455777776666655 8899999 99999999888777766666665544    11                        


Q ss_pred             ---hHHHHHHHHHhhcccccccc-cccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhc--------ccchH-
Q 012500           85 ---FWSIAICRMLVGVGEASFIS-LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS--------HLNWR-  151 (462)
Q Consensus        85 ---~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~--------~~gwr-  151 (462)
                         .|...+.-+...+-.....+ .-..++.|.++.+|-.|..++...+.++|.++++.+..++.+        .-.|. 
T Consensus       125 ~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~  204 (472)
T TIGR00769       125 ILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHV  204 (472)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHH
Confidence               22222333333333333443 567789999999999999999999999999999999888763        12342 


Q ss_pred             ---HHHHHHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccch
Q 012500          152 ---YAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFL  228 (462)
Q Consensus       152 ---~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (462)
                         ..+.+.++.+++...+...+ .+...     ++++....                      ++  .++++       
T Consensus       205 ~~~~l~~i~~~~~~~~~~~~~~l-~~~~~-----~~~~~~~~----------------------~~--~~~k~-------  247 (472)
T TIGR00769       205 SLKNLMVIVICSGLAIILLYWWV-NRNVL-----TDPRSYNP----------------------AL--KEKKV-------  247 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-Hhccc-----CCccccch----------------------hh--ccccC-------
Confidence               23344443333333333322 21110     00000000                      00  00000       


Q ss_pred             hhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh--h---hhhhHHHhhhhhhhhhhHH
Q 012500          229 NQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM--M---FGGVTIVCGIVGTISGGFI  303 (462)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~g~l  303 (462)
                      ++..+..++++.++++|.++.+.+...+++...+.+..---....+.+. ++.+.  .   +....++..++..++.+++
T Consensus       248 k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p-~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l  326 (472)
T TIGR00769       248 KPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYP-SPNEYSAFMGDFSTWTGVVSVTMMLLSGNV  326 (472)
T ss_pred             CCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1112345678999999999888887777777665555433334455442 32221  2   2233445555556666888


Q ss_pred             Hhhhccc
Q 012500          304 LDQMGAT  310 (462)
Q Consensus       304 ~d~~~~~  310 (462)
                      .+|+|-+
T Consensus       327 ~~~~Gw~  333 (472)
T TIGR00769       327 IRKYGWL  333 (472)
T ss_pred             HHHhhHH
Confidence            8888876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.99  E-value=3e-09  Score=102.23  Aligned_cols=140  Identities=12%  Similarity=0.107  Sum_probs=102.6

Q ss_pred             hCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHH
Q 012500          276 YHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL--SSLYGFLALFTVGELLV  352 (462)
Q Consensus       276 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  352 (462)
                      ++.+.... .+.+...++..++.++.|++.||+|+|     +.+..+.++..+..++....  .+.+..++.-++.|++.
T Consensus        71 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~  145 (465)
T TIGR00894        71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFK-----WSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQ  145 (465)
T ss_pred             CCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcc-----hhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhc
Confidence            45554444 445777888999999999999999998     77766665555544443222  33455566667778888


Q ss_pred             HhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHHHHHHH
Q 012500          353 FATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAG  421 (462)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  421 (462)
                      +...+....++.+..|+++|+++.++.+..... |.+++|.+.+.+.+...+|+..|++.++..++..+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~  213 (465)
T TIGR00894       146 GSVSPATHKIIVKWAPPKERSRLLGMSTSGFQL-GTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSL  213 (465)
T ss_pred             ccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHH
Confidence            888888888999999999999999999655565 99999999999988743488878777665444433

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.96  E-value=3.5e-09  Score=113.59  Aligned_cols=149  Identities=15%  Similarity=0.052  Sum_probs=121.7

Q ss_pred             hhhhhhhccccccccc-cccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 012500           16 LKRSMKKKKFLSLRKL-AAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRM   93 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~   93 (462)
                      +|.+..+.  ++.+.. +.+  ++.+.+.++.++++++.|++ ||+++|+++.++.++.+++.++..+..+.+.+++..+
T Consensus       255 ~~~~~~~~--~g~s~~~~~g--~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (1146)
T PRK08633        255 FPAYAKEV--LGLDNTFQVQ--YLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFF  330 (1146)
T ss_pred             hHHHHHHH--hCCCcHHHHH--HHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            56555554  455555 544  48899999999999999999 9999999999999999998888888889999999999


Q ss_pred             HhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhc-ccchHHHHHHHHHHHHHHHHHH
Q 012500           94 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-HLNWRYAFWGEAILMLPFAVLA  168 (462)
Q Consensus        94 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~~gwr~~f~~~~~~~~~~~~~~  168 (462)
                      +.|++.+...+...+++.+..|+++||+++++.+....+|.++++.+++.+.. .+++...|++.+.+.++..+..
T Consensus       331 ~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  406 (1146)
T PRK08633        331 LFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYT  406 (1146)
T ss_pred             HHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence            99999999888899999999999999999999999999999888888776654 2456667776666554444333

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.96  E-value=4.6e-09  Score=90.59  Aligned_cols=349  Identities=12%  Similarity=0.006  Sum_probs=212.1

Q ss_pred             ch-hHHHHHHHHHHH----------hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHH
Q 012500            2 SF-CIHVLLCLIGLI----------LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGL   69 (462)
Q Consensus         2 ~~-~i~~~~~~~~~~----------~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~   69 (462)
                      +| -+.+++|.+|++          .|.....+  .++++.++..- +.=...-.+++.-.+.=.+ |..-.|++++.-.
T Consensus         3 ~W~~~~~llC~yG~~~e~RPseP~~tpyl~gp~--~NlT~~~l~~e-vyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~   79 (433)
T KOG3810|consen    3 SWLKITCLLCLYGFVREFRPSEPYLTPYLLGPD--KNLTEDQLTNE-VYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQA   79 (433)
T ss_pred             chhhhhhhhhhhhHHHHhCCCCCccchhccCCC--CCccHHHHhcc-cccchhHHHHHHHHHHHHHhhhhhcceeeeeec
Confidence            56 677889999998          23222222  24444443310 1111111222333333345 7778999999888


Q ss_pred             HHHHHHHHhhhccchhHHHHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhccc-
Q 012500           70 SVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-  148 (462)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-  148 (462)
                      +.......+.-+.++.+.+=+.-+.-|...+ ...+-++++-+.++|+++.++.+...+..-.|-..|..++..+...- 
T Consensus        80 ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~  158 (433)
T KOG3810|consen   80 LSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLET  158 (433)
T ss_pred             cchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcc
Confidence            8888888889999999999999999998877 55678899999999999999999999999999999998888877542 


Q ss_pred             -chHHHHHHHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccc
Q 012500          149 -NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRF  227 (462)
Q Consensus       149 -gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (462)
                       +....-.+.-... .+....-+++|..++..-....+++.       ...+       .++..++.       +..+..
T Consensus       159 ~sy~~LN~ISL~~~-~ia~~~A~fLP~v~rSl~f~~~~~~~-------~v~~-------~e~~~~~~-------~~~~~l  216 (433)
T KOG3810|consen  159 LSYTTLNYISLAEV-TIAVLLALFLPRVKRSLYFHRLEDKI-------SVGD-------LEEMNPQA-------SYMSYL  216 (433)
T ss_pred             cchhhhchhhHHHH-HHHHHHHhhCCCCchhhhhhcccccc-------eecc-------chhcCccc-------hhhHHH
Confidence             3333333332222 22223333334322111000000000       0000       00000000       000001


Q ss_pred             hhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh--hhh-hhHHHhhhhhhhhhhHHH
Q 012500          228 LNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM--MFG-GVTIVCGIVGTISGGFIL  304 (462)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~g~l~  304 (462)
                      ..-....+++++...+||.+..-.+-+.+...+++-+.++....-.+.. .++...  +.. ++..+.+.++.+..|++.
T Consensus       217 ~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~-~~~~~vyNG~veAv~tlLGa~~~~~~g~l~  295 (433)
T KOG3810|consen  217 RGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVA-PNPANVYNGAVEAVSTLLGAIAALAAGYLN  295 (433)
T ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhC-CCchhhhcCHHHHHHHHHHHHHHHHHHhee
Confidence            1223344556777788888888777777777777777776665555543 222222  111 444555666777788876


Q ss_pred             hhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHH
Q 012500          305 DQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIST  380 (462)
Q Consensus       305 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (462)
                      -.+.|+..   .++..+...-+.+.+.+...++.|...+...++........+.....++.....+.-|...|+.+
T Consensus       296 i~w~r~g~---~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNT  368 (433)
T KOG3810|consen  296 INWNRWGD---LLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINT  368 (433)
T ss_pred             eccchhhH---HHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHH
Confidence            55555421   34455566666667777777888888888888888887777777777777777888888888874

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.96  E-value=4.3e-09  Score=98.72  Aligned_cols=146  Identities=10%  Similarity=-0.074  Sum_probs=107.8

Q ss_pred             hhhhhhhccccccccccccchhhHHHHH-HHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhc------cchhHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFT-VTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGS------SFDFWS   87 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~   87 (462)
                      .|.+..+   .+.++.+.+.  ...... ...+++.++.|++ ||+|+|+.+..+..+.++..+....      .++...
T Consensus       231 ~~~~l~~---~G~s~~~ig~--~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (390)
T TIGR02718       231 SKLYLVD---AGWPLEWIGR--LGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAV  305 (390)
T ss_pred             hhHHHHh---cCCCHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHH
Confidence            4445554   5777777655  666654 4666778899999 9999999988877665333322221      233444


Q ss_pred             HHHHHHHhhcccccccccccchhcccCCC-CCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHH
Q 012500           88 IAICRMLVGVGEASFISLAAPFIDDNAPV-PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV  166 (462)
Q Consensus        88 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~  166 (462)
                      ++....+.+++.+...+...+.+.+..++ +++++.++..+...++|..+||.++|.+.++.||+..|++.+++.++..+
T Consensus       306 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       306 AWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            45555666777777777777787777775 78999999999999999999999999999999999999988776655433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.95  E-value=2.3e-08  Score=89.40  Aligned_cols=170  Identities=16%  Similarity=0.139  Sum_probs=115.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHH
Q 012500          245 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  323 (462)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  323 (462)
                      ++++...++..........+....+ .+.+.+++++.+. .+.+++.+.+.+.++..|.+.||+|.|     ++...+.+
T Consensus        14 ~~L~~S~~af~v~F~VW~l~s~l~~-~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR-----~~~~~s~~   87 (417)
T COG2223          14 RNLWLSTLAFDVGFMVWTLFSPLGV-FIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGR-----KWTILSML   87 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-hhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCch-----HHHHHHHH
Confidence            4445444443333333333333333 4457799998777 556888999999999999999999999     78877777


Q ss_pred             HHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHh
Q 012500          324 LGAISCLTAFCLSSLY---GFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  400 (462)
Q Consensus       324 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~  400 (462)
                      +..+-++........+   ..+++-.+.|+ .+..+......++..+|||++|.++|++. ..|. |..+...+.+.+..
T Consensus        88 l~~IP~~~~~~a~~~~~~~~ll~~gll~G~-~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~-G~av~q~~~P~v~~  164 (417)
T COG2223          88 LLLIPCLGLAFAVTYPSTWQLLVIGLLLGL-AGASFAVGMPNASFFFPKEKQGLALGIAG-AGNL-GVAVAQLVAPLVAV  164 (417)
T ss_pred             HHHHHHHHHHHHccCCchHHHHHHHHHHhc-ccceehcccccccccCChhhhhHHHHHhc-cccc-cHHHHHHHHHHHHH
Confidence            7666665555443332   44444444333 33556667788889999999999999994 6665 88889988888888


Q ss_pred             hhcc--hhHHHHHHHHHHHHHHHHH
Q 012500          401 HVNN--WRKTTLALTSIFFLAAGIW  423 (462)
Q Consensus       401 ~~g~--~~~~~~~~~~~~~~~~~~~  423 (462)
                      ..|.  |+....+.....++..+..
T Consensus       165 ~~g~~~w~~~~~i~~~~l~v~~v~~  189 (417)
T COG2223         165 AFGFLAWRNVAGIYVVALAIAAVLA  189 (417)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            7773  6666666665555544433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.94  E-value=6e-09  Score=82.08  Aligned_cols=125  Identities=17%  Similarity=0.216  Sum_probs=94.4

Q ss_pred             hHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccC
Q 012500          288 VTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSV  367 (462)
Q Consensus       288 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (462)
                      ...++..++.+..+++.||++||     +.+.................++.+.......+.+++.+...+.......+..
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   80 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRK-----PVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIY   80 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchh-----HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC
Confidence            34667788899999999999998     7766666655555555555566666777777788887777777788888999


Q ss_pred             CcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHHHHH
Q 012500          368 KPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLA  419 (462)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  419 (462)
                      |+++|+++.++.+...+. |..++|.+.+.+.+..+ ++..+.......+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  130 (141)
T TIGR00880        81 PPEERGVALGLMSAGIAL-GPLLGPPLGGVLAQFLG-WRAPFLFLAILALAA  130 (141)
T ss_pred             ChhhhhHHHHHHHHhHHH-HHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHH
Confidence            999999999999766555 89999999999988755 656666555444433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.94  E-value=2.3e-09  Score=102.34  Aligned_cols=115  Identities=15%  Similarity=0.035  Sum_probs=99.1

Q ss_pred             hhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHhhcccccccccccchhccc
Q 012500           36 SVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSS-FDFWSIAICRMLVGVGEASFISLAAPFIDDN  113 (462)
Q Consensus        36 s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~  113 (462)
                      ++......++.+++.++.+++ ||+|+|+++..+.++.+++.+...+. ++.+.+++..++.|++.+...+...++++|.
T Consensus       260 ~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (437)
T TIGR00792       260 SYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADT  339 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            446777889999999999999 99999999999998888887777665 4667778888899999998888889999988


Q ss_pred             CC-------CCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccch
Q 012500          114 AP-------VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW  150 (462)
Q Consensus       114 ~~-------~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gw  150 (462)
                      .|       ++++|.+.++.+....+|..+++.+.+.+.+..||
T Consensus       340 ~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       340 VDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             hhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            65       45689999999999999999999999999876665

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR01272 gluP glucose/galactose transporter

Probab=98.93  E-value=6.8e-09  Score=93.42  Aligned_cols=139  Identities=10%  Similarity=-0.003  Sum_probs=110.9

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML   94 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l   94 (462)
                      .+.++.+...++.++.+.+.  ..+.+..+..++....+++ ||+|+|+++..+..+..++.++....++...+ .+-++
T Consensus       163 ~~~yl~~~~~~g~s~~~a~~--~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l  239 (310)
T TIGR01272       163 LVNFLSDPHALGLPEDQAAH--FTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLA  239 (310)
T ss_pred             HHHHHHhcccCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHH
Confidence            67777654446777777555  8999999999999999999 99999999998888888877666665554333 35558


Q ss_pred             hhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHH
Q 012500           95 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAI  159 (462)
Q Consensus        95 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~  159 (462)
                      .|++.+..+|...+...+..|+ +.+++.++. ....+|..++|++.|.+.|..|.+..|++..+
T Consensus       240 ~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~  302 (310)
T TIGR01272       240 LGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVP  302 (310)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHH
Confidence            8999999999999999998874 456667775 45668999999999999999999999886544

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.93  E-value=2.7e-08  Score=93.76  Aligned_cols=158  Identities=14%  Similarity=0.055  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhCCCcchhhhhhhHHHhhhhhhhhhhHHHhhh-----ccccccchhHHHHHHHHHHHH
Q 012500          254 YIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQM-----GATISNAFKLLSAATFLGAIS  328 (462)
Q Consensus       254 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~~~~~~~~~~~~~~~~~~  328 (462)
                      ++...........-+|.|+++. |.+..+..+....... .+..++.|+++||+     |||+    +++..+....+..
T Consensus         8 ~~~~~~~~~~~~~~~~~~l~~~-g~~~~~ig~~~~~~~~-~~~~~l~g~~~Dr~~~~~~g~rr----~~l~~~~~~~~l~   81 (402)
T PRK11902          8 GFASGLPLALTSGTLQAWMTVE-GLDIQTIGFFSLVGQA-YIFKFLWAPLMDRYTPPLLGRRR----GWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCcch----hHHHHHHHHHHHH
Confidence            5556666667778899999985 7776666433333332 57789999999999     6651    4565555555444


Q ss_pred             HHHHHHh---hhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcch
Q 012500          329 CLTAFCL---SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNW  405 (462)
Q Consensus       329 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~  405 (462)
                      .......   .+.+......++.+++.....++..+++.+..|+++|+++.++....... |..+++.+.+.+.+...+|
T Consensus        82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~-g~i~g~~l~~~l~~~~~gw  160 (402)
T PRK11902         82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRL-AMLVSGGLALWLADRVLGW  160 (402)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHH-HHHHHhHHHHHHHhcccCH
Confidence            4443333   23444444444555666666677788889999999999999999655454 8888888888888865458


Q ss_pred             hHHHHHHHHHHHH
Q 012500          406 RKTTLALTSIFFL  418 (462)
Q Consensus       406 ~~~~~~~~~~~~~  418 (462)
                      +..+++.+...+.
T Consensus       161 ~~~f~i~a~~~l~  173 (402)
T PRK11902        161 GNTYLLMAGLMLA  173 (402)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888777665443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.92  E-value=2.9e-08  Score=94.90  Aligned_cols=153  Identities=15%  Similarity=0.103  Sum_probs=110.7

Q ss_pred             HHhhHHHHHHhCCCcchhhhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 012500          266 YWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALF  345 (462)
Q Consensus       266 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (462)
                      ..++....+ .|.++....+.....++..+..++.|+++|.+|||     ..++.+.++..+........++....+...
T Consensus        65 ~~l~~I~~d-iG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr-----~~~i~g~~l~vvG~Iv~atA~~~~~~iag~  138 (599)
T PF06609_consen   65 SILPYINAD-IGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRR-----YFFIIGSLLGVVGSIVCATAQNMNTFIAGM  138 (599)
T ss_pred             HHHHHHHHh-cCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcch-----HHHHHHHHHHHhHHHHhhcCCcHHHHHHHH
Confidence            334544444 44455455566667778888889999999999999     888899899888888888888888889999


Q ss_pred             HHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHH
Q 012500          346 TVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV  425 (462)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  425 (462)
                      .+.+++.+.... ....+.|..|.+.|..+.++.. .........+|.+...+..+ ++|++.+++..+...++.+..++
T Consensus       139 ~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~-~~~i~~~~~~~~ia~~~~~~-~~WRw~~~~~~i~~~i~~vl~~~  215 (599)
T PF06609_consen  139 VLYGVGAGVQEL-AALAISELVPNKWRGLGLAIAS-IPFIITTWISPLIAQLFAAH-SGWRWIFYIFIIWSGIALVLIFF  215 (599)
T ss_pred             HHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHH-HHHHhhhcccHHHHHHhccC-CCcchHHHHHHHHHHHHHHHHHH
Confidence            998887665443 3445788888899988887764 33443555677666555443 56999998887766655555444


Q ss_pred             HH
Q 012500          426 GI  427 (462)
Q Consensus       426 ~~  427 (462)
                      +.
T Consensus       216 fY  217 (599)
T PF06609_consen  216 FY  217 (599)
T ss_pred             Hh
Confidence            33

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK10133 L-fucose transporter; Provisional

Probab=98.92  E-value=4.9e-08  Score=92.63  Aligned_cols=145  Identities=9%  Similarity=0.029  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHH
Q 012500          248 VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  326 (462)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  326 (462)
                      ....+..+...+.........|.+ ++.++.++.+. ...+...++..++.+..|++.||+|||     +.+..+..+..
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r-----~~l~~g~~~~~  102 (438)
T PRK10133         29 ALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK-----AGIITGLFLYA  102 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHHHHHHHHH
Confidence            334444555556666667778876 77788887666 444778889999999999999999999     88877777666


Q ss_pred             HHHHHH---HHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHH
Q 012500          327 ISCLTA---FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ  399 (462)
Q Consensus       327 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~  399 (462)
                      ...++.   ...++.+..++..++.|++.+...+..+..+.+..+++++....+..+..... |..++|.+.+.+.
T Consensus       103 ~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~-G~~~g~~~g~~l~  177 (438)
T PRK10133        103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSF-GAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            665543   23456777777888888888888888888777655455666678887555554 8888887766544

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.90  E-value=6.7e-09  Score=111.09  Aligned_cols=149  Identities=13%  Similarity=0.025  Sum_probs=119.6

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhcc------------
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSS------------   82 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~------------   82 (462)
                      +|.+..+.  ++.++.+.+.  +.+.+.++.++++++.|++ ||.++++.+..+.++.+++.+..++.            
T Consensus       248 ~p~~~~~~--~g~~~~~~g~--~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  323 (1140)
T PRK06814        248 LPLLAKET--LGGDENVATL--FLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLK  323 (1140)
T ss_pred             hHHHHHHH--cCCchHHHHH--HHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccccccccc
Confidence            67676654  5667776555  9999999999999999999 98888887777766666666544443            


Q ss_pred             --------chhHHHHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhc-ccchHHH
Q 012500           83 --------FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-HLNWRYA  153 (462)
Q Consensus        83 --------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~~gwr~~  153 (462)
                              ++.+.++++-++.|++.+...+...+++.+.+|+++||+++|..+....+|..+++++.+.+.+ ..++...
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~  403 (1140)
T PRK06814        324 SILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWI  403 (1140)
T ss_pred             chhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence                    6778888899999999999999999999999999999999999999999999999999988873 4567777


Q ss_pred             HHHHHHHHHHHHHHH
Q 012500          154 FWGEAILMLPFAVLA  168 (462)
Q Consensus       154 f~~~~~~~~~~~~~~  168 (462)
                      +++.+++.++.....
T Consensus       404 ~~~~~~~~~~~~~~~  418 (1140)
T PRK06814        404 ILFIALANLIVAILI  418 (1140)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            776666544444333

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.89  E-value=1.7e-08  Score=93.63  Aligned_cols=153  Identities=16%  Similarity=0.117  Sum_probs=118.2

Q ss_pred             hhhhhhhccccc-cccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhcc-chhHHHHH--
Q 012500           16 LKRSMKKKKFLS-LRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSS-FDFWSIAI--   90 (462)
Q Consensus        16 ~p~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~--   90 (462)
                      .+.++++   .+ .+....+.  ..+...++-++.-...+++ .|+|.|+++.++.+.+++=..+.+.. ++.+...+  
T Consensus       230 ~~~yl~~---~gg~~~~~~g~--~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~  304 (400)
T PF03825_consen  230 FSIYLQE---LGGYSGSTIGI--LWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQ  304 (400)
T ss_pred             HHHHHHH---cccchhhHHHH--HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            3445555   34 33333333  5566667777888899999 99999999999999999999998887 55444333  


Q ss_pred             --HHHHhhcccccccccccchhcccCCCCCchhHHHHHHhh-hhhhhhhhhhHHHHhhcccc------hHHHHHHHHHHH
Q 012500           91 --CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMC-IPTGVALGYVYGGVVGSHLN------WRYAFWGEAILM  161 (462)
Q Consensus        91 --~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~g~~~~~~l~~~~g------wr~~f~~~~~~~  161 (462)
                        ...++|+..+..+.++..++.+..|++.|+++.+++... .++|..+|..++|++.+++|      |...+.+.+++.
T Consensus       305 ~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~  384 (400)
T PF03825_consen  305 LLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMA  384 (400)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence              355799999999999999999999999999999998764 68999999999999998765      555666666666


Q ss_pred             HHHHHHHhhccc
Q 012500          162 LPFAVLAFVIKP  173 (462)
Q Consensus       162 ~~~~~~~~~~~p  173 (462)
                      ++..++.+++.+
T Consensus       385 ~~~~~~f~~~fk  396 (400)
T PF03825_consen  385 LVILVLFVILFK  396 (400)
T ss_pred             HHHHHHHHhhcc
Confidence            666665555543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.88  E-value=2e-08  Score=95.50  Aligned_cols=150  Identities=6%  Similarity=-0.053  Sum_probs=91.5

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhh----hccchhHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGC----GSSFDFWSIAI   90 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~----~~~~~~~~l~~   90 (462)
                      +|.++.++  .+.+..+.+.  ..+...++..+++++.|++ ||+|||+++..+.++.++.....    ...++....+.
T Consensus       266 lp~~l~~~--~g~s~~~~~~--~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (432)
T PRK10406        266 MQKYLVNT--AGMHANVASG--IMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFG  341 (432)
T ss_pred             HHHHHHHh--cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            67776554  4555555444  6667677778888999999 99999998877665543333211    11223332222


Q ss_pred             HHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhh-hhhhhhhHHHHhhcccc-hHHHHHHHHHHHHHHHHHH
Q 012500           91 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLA  168 (462)
Q Consensus        91 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~~  168 (462)
                      .-.+.++..+...+....++.|++|++.|+.++|+.+...++ .....|.+.+.+ +..| |...++..++..++..+..
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~  420 (432)
T PRK10406        342 LVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVS  420 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHH
Confidence            222222333333445667889999999999999998766554 234477777755 4445 5556665555555554444


Q ss_pred             hh
Q 012500          169 FV  170 (462)
Q Consensus       169 ~~  170 (462)
                      ++
T Consensus       421 ~~  422 (432)
T PRK10406        421 LM  422 (432)
T ss_pred             HH
Confidence            44

>PTZ00207 hypothetical protein; Provisional

Probab=98.88  E-value=6.1e-08  Score=93.31  Aligned_cols=152  Identities=16%  Similarity=0.088  Sum_probs=94.6

Q ss_pred             HHHHHHHhhHHHHHHhCCCcchhhh-hhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHh----
Q 012500          261 IGAYSYWGPKAGYNIYHMSNADMMF-GGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL----  335 (462)
Q Consensus       261 ~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  335 (462)
                      .+.+..+.|. +++.+|.+..+... ..+.. ......++.|++.||+|+|     +.+..+.++..+..++....    
T Consensus        43 ~y~fsv~s~~-L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R-----~vllig~ll~~iG~ll~ala~~~~  115 (591)
T PTZ00207         43 MYAFNLISGA-MQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPR-----PIFVLSMTVFCLGTLLFALTFQEV  115 (591)
T ss_pred             HHHHHHHHHH-HHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHHHHHhccc
Confidence            3455555564 56678888655532 23222 2234556789999999999     88877777766666555543    


Q ss_pred             --hhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhcccc-chhHHHHHHhhhcchhHHHHHH
Q 012500          336 --SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVP-SSPLVGVLQDHVNNWRKTTLAL  412 (462)
Q Consensus       336 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~g~l~~~~g~~~~~~~~~  412 (462)
                        ++.+.+.+..++.+.+.+...+.....+.+.+ |++||.+.|+.....+. |+++ ++...+++.+   ++...+++.
T Consensus       116 i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~F-p~~RG~a~Gi~~~~~gL-GsaI~~~l~~~l~~~---~~~~~fl~l  190 (591)
T PTZ00207        116 IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVF-PSNRGAVVAIMKTFTGL-GSAILGSIQLAFFSD---NTSAYFFFL  190 (591)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---hHHHHHHHH
Confidence              35666666666777776655555555666665 57899999999777766 6654 5544454443   354555555


Q ss_pred             HHHHHHHHHHHH
Q 012500          413 TSIFFLAAGIWF  424 (462)
Q Consensus       413 ~~~~~~~~~~~~  424 (462)
                      +...++..++..
T Consensus       191 ~vl~~vv~ll~~  202 (591)
T PTZ00207        191 MSFALVVGILAI  202 (591)
T ss_pred             HHHHHHHHHHHH
Confidence            555444444333

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.85  E-value=3.3e-08  Score=84.21  Aligned_cols=143  Identities=8%  Similarity=0.013  Sum_probs=109.6

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhcc-------chhHHHHHHHHHhhc
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSS-------FDFWSIAICRMLVGV   97 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~-------~~~~~l~~~r~l~G~   97 (462)
                      ++.|++|...  +.+.-.+|..+ +++.|.+ ||+|++.++.+|.+...+|..+.-.+       .++|.+.+..++.|.
T Consensus        32 l~~sq~~l~~--l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~  108 (250)
T PF06813_consen   32 LGYSQSQLNT--LSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGN  108 (250)
T ss_pred             hCCCHHHHHH--HHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcc
Confidence            7888888666  88999999876 6889999 99999999999999999988776543       467888888899999


Q ss_pred             ccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhcc
Q 012500           98 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  172 (462)
Q Consensus        98 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  172 (462)
                      +.+...+++.....+.|| ++||++.|+.-...+++..+-..+...+.+.-.-+..+........+..+..++..
T Consensus       109 s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr  182 (250)
T PF06813_consen  109 SSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVR  182 (250)
T ss_pred             cHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhhee
Confidence            888777777777778998 68999999999999998877776666555543344444444444444444444443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.84  E-value=2.1e-08  Score=98.99  Aligned_cols=126  Identities=8%  Similarity=-0.056  Sum_probs=93.2

Q ss_pred             HHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhh-------------
Q 012500          271 AGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS-------------  336 (462)
Q Consensus       271 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  336 (462)
                      -+++.++.+..+. .+.+...++..++.++.+++.||.+|+     +++..+.++.++..++....+             
T Consensus        58 ~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~-----~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~  132 (633)
T TIGR00805        58 TIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRP-----IVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVS  132 (633)
T ss_pred             hhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcc-----eEEEecHHHHHHHHHHHhChHHhcCCcccccccc
Confidence            4566688886665 455788899999999999999999998     666666655555544433221             


Q ss_pred             --------------------------------------hhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHH
Q 012500          337 --------------------------------------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAI  378 (462)
Q Consensus       337 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (462)
                                                            ....+++.-++.|++.+..++....++.|.+|+++|+...++
T Consensus       133 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i  212 (633)
T TIGR00805       133 STGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGI  212 (633)
T ss_pred             ccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHH
Confidence                                                  112334556677777777778888899999999999999999


Q ss_pred             HHHHHhhhccccchhHHHHHHhhh
Q 012500          379 STVSIHIFGDVPSSPLVGVLQDHV  402 (462)
Q Consensus       379 ~~~~~~~~g~~~~~~~~g~l~~~~  402 (462)
                      .+..... |..+|+.+++++.+..
T Consensus       213 ~~~~~~i-G~~lG~llgg~l~~~~  235 (633)
T TIGR00805       213 LESIAVF-GPAFGYLLGSFCLQIY  235 (633)
T ss_pred             HHHHHHh-hhHHHHHHHHHHHhcc
Confidence            9655554 9999999999888653

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.83  E-value=1.2e-07  Score=89.33  Aligned_cols=142  Identities=13%  Similarity=0.019  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhh----hccccccchhHHHH-HHH
Q 012500          250 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQ----MGATISNAFKLLSA-ATF  323 (462)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~~~~~~~-~~~  323 (462)
                      .....+...+.+.....+++.|+++ .|.++... .......+.+++..++.|+++||    +|||     +..+. +..
T Consensus         9 ~~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR-----rp~il~g~~   82 (477)
T TIGR01301         9 VASVAAGVQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR-----RPFIAAGAA   82 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh-----HHHHHHHHH
Confidence            3333445556666666777777755 67776544 44466778889999999999995    8887     54444 344


Q ss_pred             HHHHHHHHHHHhhhh-----------------HHHHHHHHHHHHHHHhccccceeeeeccCCcchh--hHHHHHHHHHHh
Q 012500          324 LGAISCLTAFCLSSL-----------------YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLR--ALSMAISTVSIH  384 (462)
Q Consensus       324 ~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  384 (462)
                      .......++....+.                 +..+..+.+..+......++..+++.|..|+++|  +.+.++.+...+
T Consensus        83 ~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~  162 (477)
T TIGR01301        83 LVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMA  162 (477)
T ss_pred             HHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHH
Confidence            444443443332221                 2223334445566677788889999999998754  578888866666


Q ss_pred             hhccccchhHHHHH
Q 012500          385 IFGDVPSSPLVGVL  398 (462)
Q Consensus       385 ~~g~~~~~~~~g~l  398 (462)
                      . |+.+++.+.+..
T Consensus       163 l-G~ilg~~~g~~~  175 (477)
T TIGR01301       163 I-GNVLGYAAGAYS  175 (477)
T ss_pred             H-HHHHHHHHHHHH
Confidence            6 999998777654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.81  E-value=1.1e-08  Score=91.36  Aligned_cols=133  Identities=12%  Similarity=0.049  Sum_probs=118.7

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccc
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS  104 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~  104 (462)
                      ++.++.+...  +.....+..++++.+.|++ ||+|.|+++..++++..+.++..-+...-..+.++-.+.|...|+.+.
T Consensus       283 ~gls~~~lll--~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA  360 (438)
T COG2270         283 LGLSSTELLL--IGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQA  360 (438)
T ss_pred             cCccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHH
Confidence            7888888776  8888889999999999999 999999999999999999999888888888888888999999999999


Q ss_pred             cccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccc-hHHHHHHHHHH
Q 012500          105 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAIL  160 (462)
Q Consensus       105 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~~~  160 (462)
                      .+.++.++.+|++|-++.+|++......+..+||.+-+.+.+..| -|..+....++
T Consensus       361 ~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vl  417 (438)
T COG2270         361 SSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVL  417 (438)
T ss_pred             HHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            999999999999999999999999999999999999998887554 56555555443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=2.9e-08  Score=87.66  Aligned_cols=134  Identities=13%  Similarity=0.104  Sum_probs=112.1

Q ss_pred             hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeee
Q 012500          284 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVC  363 (462)
Q Consensus       284 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (462)
                      .+.....+..++.+++.|.+.||+|+|     ..++.+..+......+..+..+.+..++.=.+-+.+..+......++.
T Consensus       110 ~LFaskA~~qllvnp~~G~l~~~iGy~-----ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglaml  184 (464)
T KOG3764|consen  110 LLFASKALVQLLVNPFFGNLIDRIGYK-----IPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAML  184 (464)
T ss_pred             HHHHHHHHHHHHhcccchhhHHHhccc-----cHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHH
Confidence            344667888999999999999999999     777888888877777777777888777788888999988888889999


Q ss_pred             eccCCcc-hhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHHHHHHHHHH
Q 012500          364 LHSVKPS-LRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  424 (462)
Q Consensus       364 ~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  424 (462)
                      .+.+|++ +|++++|+.-.+... |-.+||+++|.++|..| +..+|.+++++++.-..+.+
T Consensus       185 Ad~f~~d~er~~vmGialgfisl-G~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l  244 (464)
T KOG3764|consen  185 ADVFPEDNERGSVMGIALGFISL-GVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQL  244 (464)
T ss_pred             HHHcccchhhhHHHHHHHHHHhc-cceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHH
Confidence            9999985 689999999555554 99999999999999987 77889988888777665554

>TIGR00896 CynX cyanate transporter

Probab=98.80  E-value=1.1e-07  Score=88.08  Aligned_cols=141  Identities=12%  Similarity=0.102  Sum_probs=97.4

Q ss_pred             HHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 012500          266 YWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLAL  344 (462)
Q Consensus       266 ~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (462)
                      ..+|.+ .+.+|.++... ...+...++..++.++.|++.||+|+|     +.+..+..+........ ..++.+..+..
T Consensus        21 ~~lp~l-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~~~~~-~~~~~~~l~~~   93 (355)
T TIGR00896        21 PLLPQI-RSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEE-----RSVAAGLLLIAAGILIR-SAPGTALLFAG   93 (355)
T ss_pred             ccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCch-----HHHHHHHHHHHHHHHHH-HhccHHHHHHH
Confidence            445554 44578886665 455788899999999999999999998     77666555544444333 44555555566


Q ss_pred             HHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcc-hhHHHHHHHHH
Q 012500          345 FTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN-WRKTTLALTSI  415 (462)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~-~~~~~~~~~~~  415 (462)
                      .++.+++.+...+.......+.. +++|+++.++.+...+. |..+++.+.+.+.+..+. |+..+...++.
T Consensus        94 ~~~~g~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~  163 (355)
T TIGR00896        94 TALIGVGIAIINVLLPSLIKRDF-PQRVGLMTGLYSMALMG-GAALAAAATVPLAQHSGGHWQQALAWWALP  163 (355)
T ss_pred             HHHHHHHHHHHhccchHHHHHhC-cchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            66667776665555555555555 56899999999766555 888899888888876543 66666555443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.79  E-value=1.5e-08  Score=96.56  Aligned_cols=151  Identities=17%  Similarity=0.134  Sum_probs=132.1

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccC--CchhHHHHHHHHHHHHHhhhccchhHHHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHN--PFRLIGVGLSVWTFATAGCGSSFDFWSIAICR   92 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r   92 (462)
                      +|.+...   .+.++.+...  +.+...+...++.+..|.+ |+..  ++.+..++++..+++.+.+++.++++.++..-
T Consensus       321 l~~~~~~---~g~~~~~aa~--l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~  395 (509)
T KOG2504|consen  321 LPSYAKS---LGLSSNDAAF--LLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFS  395 (509)
T ss_pred             HHHHHhh---cCCChhhhHH--HHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            4444443   6777777656  9999999999999999999 9988  45567888999999999999999999999999


Q ss_pred             HHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccc-hHHHHHHHHHHHHHHHHHHhhc
Q 012500           93 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVI  171 (462)
Q Consensus        93 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~~  171 (462)
                      .+.|+..|........++.|..+.++-..+.|+.....+++.++||++++.+.|..| |...|+..++..++...++++.
T Consensus       396 ~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~  475 (509)
T KOG2504|consen  396 ILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLIL  475 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHh
Confidence            999999998888888899999999999999999999999999999999999998887 9999999999877776655544

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.79  E-value=2.1e-08  Score=91.99  Aligned_cols=144  Identities=17%  Similarity=0.090  Sum_probs=127.8

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccc
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS  104 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~  104 (462)
                      .+..++-.|  ........|-++.-++++++ .|+|+-+++..++.+..+=.+..+..+|.|+.+-..+++|+..+..+.
T Consensus       401 ~~~~~~LfG--v~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWa  478 (618)
T KOG3762|consen  401 LGGIKTLFG--VVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWA  478 (618)
T ss_pred             cCCcceeee--ehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHH
Confidence            444444444  47778888888899999999 999999999999999999999999999999999999999999999999


Q ss_pred             cccchhcccCCCCCchhHHHHHHhh-hhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhc
Q 012500          105 LAAPFIDDNAPVPQKTAWLSMFYMC-IPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  171 (462)
Q Consensus       105 ~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  171 (462)
                      +..+|+++..||+-|..+.++.+.. .++|--+|.++||.+.+.+|=|..|.+.++.+++.+++...+
T Consensus       479 a~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~i  546 (618)
T KOG3762|consen  479 AIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISI  546 (618)
T ss_pred             HHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999998665 678999999999999999999999999999887776655544

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.77  E-value=4.2e-08  Score=89.81  Aligned_cols=180  Identities=12%  Similarity=0.054  Sum_probs=133.2

Q ss_pred             Hhh-hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhC----CCcchh-hhhhhHHHhhhhhhhhhhHHHhhh-cccccc
Q 012500          241 LLQ-EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH----MSNADM-MFGGVTIVCGIVGTISGGFILDQM-GATISN  313 (462)
Q Consensus       241 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~  313 (462)
                      .++ .|.++.+...-+.--+.++++-..+..|+....+    +++.++ .+...+...--...+++||++||+ |+|   
T Consensus        16 ~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~---   92 (498)
T COG3104          16 FFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTR---   92 (498)
T ss_pred             cCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchh---
Confidence            344 3455666666677788888888888888888777    775444 333333333344678899999995 777   


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhccccceeeeeccCCcc--hhhHHHHHHHHHHhhhccc
Q 012500          314 AFKLLSAATFLGAISCLTAFCLS--SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS--LRALSMAISTVSIHIFGDV  389 (462)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~  389 (462)
                        +.+..+.++.++..+.+...+  .....++.+.+...+.|..-+....+..+.+|++  +|-.+.++.++..|. |+.
T Consensus        93 --~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNi-Gsl  169 (498)
T COG3104          93 --RTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINI-GSL  169 (498)
T ss_pred             --HHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeeh-HHH
Confidence              778777777777777666653  5666777777777888888888888889988873  567777887777787 999


Q ss_pred             cchhHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 012500          390 PSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGI  427 (462)
Q Consensus       390 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  427 (462)
                      ++|.+.+++.++.| |...|-..++....+.+.++..+
T Consensus       170 ~~p~i~~~~~~~~g-~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         170 IAPIITGLLAINYG-WHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             HHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999999999987 88888888877777776666544

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.76  E-value=2.5e-07  Score=83.43  Aligned_cols=118  Identities=18%  Similarity=0.122  Sum_probs=84.0

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-c----ccCCchhHHH-HHHHHHHHHHhhhccchhH-------------
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-C----SHNPFRLIGV-GLSVWTFATAGCGSSFDFW-------------   86 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-d----r~Grr~~l~~-~~~~~~~~~~~~~~~~~~~-------------   86 (462)
                      ++.++.-...  +-..-.+...+.+|+.|.. |    ||||||.++. +.++..++.++..++.++.             
T Consensus        62 lGvphk~~S~--iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~  139 (498)
T KOG0637|consen   62 LGVPHKWSSI--IWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKP  139 (498)
T ss_pred             cCCCcccccc--cccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccch
Confidence            5666555333  4455555566677777776 6    6899987654 5666677777777775433             


Q ss_pred             ----HHHHHHHHhhcccccccccccchhcccCCCCCchh-HHHHHHhhhhhhhhhhhhHHHHhh
Q 012500           87 ----SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTA-WLSMFYMCIPTGVALGYVYGGVVG  145 (462)
Q Consensus        87 ----~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~g~~~~~~l~  145 (462)
                          .++++--+.-++.-.....+-+++.|...++++.+ +++.+.....+|.++|...++++.
T Consensus       140 rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~  203 (498)
T KOG0637|consen  140 RAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLG  203 (498)
T ss_pred             HHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccC
Confidence                34444445555666777788999999998777766 999999999999999999887543

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.76  E-value=5.2e-08  Score=81.17  Aligned_cols=305  Identities=11%  Similarity=0.062  Sum_probs=156.5

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccc
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS  104 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~  104 (462)
                      ++....+.+.  +...-.-...+.+.+.|.+ ||-|||+.-+.-++.+.+++ +.-.++.|-.++++|.+.|++.+..+.
T Consensus        67 YgFgkG~Igq--LfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFS  143 (454)
T KOG4332|consen   67 YGFGKGDIGQ--LFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFS  143 (454)
T ss_pred             cCccCCccce--eeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHH
Confidence            4555556555  5555555566777888899 99999996554444444433 234578899999999999999998887


Q ss_pred             cccch-hcccCCCCCchhHHHHH----Hhhhhhhh----hhhhhHHHHhhcccc--hHHHHHHHHHHHHHHHHHHhhccc
Q 012500          105 LAAPF-IDDNAPVPQKTAWLSMF----YMCIPTGV----ALGYVYGGVVGSHLN--WRYAFWGEAILMLPFAVLAFVIKP  173 (462)
Q Consensus       105 ~~~~~-i~~~~~~~~r~~~~~~~----~~~~~~G~----~~g~~~~~~l~~~~g--wr~~f~~~~~~~~~~~~~~~~~~p  173 (462)
                      +-.++ +.|..+  +|+.-.-+.    .-+.-.|.    +++.+.+..+.+.++  --.+|-..+.+..+...  . .+.
T Consensus       144 aFEsWliaEHne--kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmA--v-il~  218 (454)
T KOG4332|consen  144 AFESWLIAEHNE--KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMA--V-ILS  218 (454)
T ss_pred             HHHHHHHHHhhh--ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHH--H-HHh
Confidence            77664 566653  343222221    11222333    333444444544432  23344333322111111  1 112


Q ss_pred             cccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHH
Q 012500          174 LQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLG  253 (462)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (462)
                      .+.....++.+.+..                                          ........+.+..++++..+-..
T Consensus       219 ~W~ENygdps~~kdl------------------------------------------ltqf~gaa~aiaSD~ki~LLG~i  256 (454)
T KOG4332|consen  219 SWSENYGDPSENKDL------------------------------------------LTQFKGAARAIASDEKIALLGAI  256 (454)
T ss_pred             hhhhccCChhhhHHH------------------------------------------HHHhhHhHHHHhcchHHHHHHHH
Confidence            222222122211110                                          00111123344445544433322


Q ss_pred             HH-HHHHHHHHHHHHhhHHHHHHhCCCcchhhhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHH
Q 012500          254 YI-AYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA  332 (462)
Q Consensus       254 ~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (462)
                      .. +-...+..+..|.|..--+..+.+ .. .+.+.+.++.++|+-+..++..|-..+.-   ..+.+...+....+.+.
T Consensus       257 qsLFE~smytFVFLWTPaLspn~e~iP-hG-fiFatFMlASmLGSSla~Rl~s~s~~~ve---~ymqivf~vs~a~l~Lp  331 (454)
T KOG4332|consen  257 QSLFEGSMYTFVFLWTPALSPNDEEIP-HG-FIFATFMLASMLGSSLASRLLSRSSPKVE---SYMQIVFLVSIAALLLP  331 (454)
T ss_pred             HHHHhhhhheeeeeecccCCCCcccCC-ch-hHHHHHHHHHHHhhHHHHHHHhcCCcccc---hHHHHHHHHHHHHHHHH
Confidence            22 223333344456775543322222 12 22244556666777666666655443322   33333333333322222


Q ss_pred             HHh-------hhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhh
Q 012500          333 FCL-------SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHI  385 (462)
Q Consensus       333 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (462)
                      ...       .++....+.++++-.+.+..+|.+.-+-.+.+|.+.|++.+-....-.+.
T Consensus       332 ilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLni  391 (454)
T KOG4332|consen  332 ILTSSVSPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNI  391 (454)
T ss_pred             HHHhccCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhH
Confidence            211       12334567777788888899999988888999999998776655443444

>TIGR00901 2A0125 AmpG-related permease

Probab=98.74  E-value=1.1e-07  Score=88.20  Aligned_cols=148  Identities=14%  Similarity=-0.008  Sum_probs=94.2

Q ss_pred             HHHHhhHHHHHHhCCCcchhhhhhhHHHhhhhhhhhhhHHHhhh-----ccccccchhHHHHHHHHHHHHHHHHHHh---
Q 012500          264 YSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQM-----GATISNAFKLLSAATFLGAISCLTAFCL---  335 (462)
Q Consensus       264 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  335 (462)
                      .....|.+.++ .|.+..+..+.....+...+ .++.|+++||+     |||    +.++..+..............   
T Consensus         7 ~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~-~~~~g~~~Dr~~~~~~Grr----~~~l~~~~~~~~~~~~~l~~~~~~   80 (356)
T TIGR00901         7 VGNTLPYWLRS-KNVSLKTIGFFSLVGLPYSL-KFLWSPLVDTVYLPFFGRR----RSWLVLTQVLLLSLLLILSFLVPS   80 (356)
T ss_pred             HHhHHHHHHHH-cCCCHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCcc----HHHHHHHHHHHHHHHHHHHcCCcc
Confidence            34456666665 57886665443323333343 88999999998     444    133444444444443333333   


Q ss_pred             hhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcc-------hhHH
Q 012500          336 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN-------WRKT  408 (462)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~-------~~~~  408 (462)
                      .+.+.......+.+.+.....++..+++.+..|+++|+.+.++.....+. |.++++.+.+.+.+..+.       |+..
T Consensus        81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~l~~~l~~~~g~~~~~~~~wr~~  159 (356)
T TIGR00901        81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRA-GMLLSGSLALVLASPEFANTGLITLWGYI  159 (356)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHH-HHHHHHHHHHHHhhhcccccccccccHHH
Confidence            23333444444455555556667778888999999999999999655555 999999999988887663       7777


Q ss_pred             HHHHHHHHHH
Q 012500          409 TLALTSIFFL  418 (462)
Q Consensus       409 ~~~~~~~~~~  418 (462)
                      +++.++..++
T Consensus       160 f~i~ai~~l~  169 (356)
T TIGR00901       160 FFWTALLILP  169 (356)
T ss_pred             HHHHHHHHHH
Confidence            7766665444

>PRK09848 glucuronide transporter; Provisional

Probab=98.71  E-value=2.2e-08  Score=95.79  Aligned_cols=112  Identities=9%  Similarity=-0.027  Sum_probs=93.3

Q ss_pred             hHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccc--hhHHHHHHHHHhhcccccccccccchhcccC
Q 012500           38 NVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEASFISLAAPFIDDNA  114 (462)
Q Consensus        38 ~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~  114 (462)
                      ......++.+++.++.+++ ||+|+|+++..+.++..++.+...+.+  +++.+++..++.|+|.+...+...++.+|..
T Consensus       269 ~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~  348 (448)
T PRK09848        269 VLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTV  348 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3444467788899999999 999999999999998888887776654  6777777888999999999999999999888


Q ss_pred             CCC-------CchhHHHHHHhhhhhhhhhhhhHHHHhhcccc
Q 012500          115 PVP-------QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN  149 (462)
Q Consensus       115 ~~~-------~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g  149 (462)
                      |.+       ++|...+..+....+|..+|+.+.+.+.+..|
T Consensus       349 ~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G  390 (448)
T PRK09848        349 EYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG  390 (448)
T ss_pred             hhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            754       45899999999999999999999888765444

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.70  E-value=2.2e-07  Score=87.58  Aligned_cols=145  Identities=19%  Similarity=0.301  Sum_probs=115.5

Q ss_pred             HhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHH
Q 012500          275 IYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS--SLYGFLALFTVGELL  351 (462)
Q Consensus       275 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  351 (462)
                      .+++++.+- .+.+....+.+++.+.+|++.||+|.|     +.+..+.++.++..++.....  +.+..++.=++.|++
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r-----~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~  141 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGAR-----RVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLG  141 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCch-----HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHH
Confidence            355554333 455778899999999999999999999     888888888877777666553  334556777788899


Q ss_pred             HHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHH
Q 012500          352 VFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV  425 (462)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  425 (462)
                      .+..++....+..+-.|+++|++..++....... |.+++-++.|.+.+...+|+..|++.+.+.++..++++.
T Consensus       142 ~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~-g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~  214 (466)
T KOG2532|consen  142 QGVLFPAIGSILAKWAPPNERSTFIAILTAGSQL-GTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFL  214 (466)
T ss_pred             HhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999655555 989898899999998445999999988887666555543

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.70  E-value=2.1e-07  Score=78.37  Aligned_cols=135  Identities=14%  Similarity=0.042  Sum_probs=98.9

Q ss_pred             hhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHH-HHHHhhhccchhHHHHHHHHH
Q 012500           17 KRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWT-FATAGCGSSFDFWSIAICRML   94 (462)
Q Consensus        17 p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~r~l   94 (462)
                      |...++.  +++|+.+.+.  +.+....-.++.+|+.|.+ ||+|++-+.+.+..+.. ++-....|  +++.=+++..+
T Consensus       288 ~~fF~~r--fGlS~~~a~~--i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~  361 (459)
T KOG4686|consen  288 PMFFQKR--FGLSAVSAGN--ILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTF  361 (459)
T ss_pred             HHHHHHh--hCCChhhccc--hhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHH
Confidence            3333444  6788877666  7777677778889999999 99999998776554443 33333333  23334566777


Q ss_pred             hhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccc---hHHHHHHH
Q 012500           95 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN---WRYAFWGE  157 (462)
Q Consensus        95 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g---wr~~f~~~  157 (462)
                      .|+............++..+|+++.|++.+..+...++|..+.|.+++.+.++-|   |--.|.+.
T Consensus       362 lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~  427 (459)
T KOG4686|consen  362 LGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLI  427 (459)
T ss_pred             HhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHH
Confidence            8887776555566778888899999999999999999999999999999998654   54444443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.70  E-value=1.5e-07  Score=87.81  Aligned_cols=149  Identities=11%  Similarity=-0.070  Sum_probs=114.0

Q ss_pred             ccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccc---hhH------HHHHHHHHhh
Q 012500           27 SLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSF---DFW------SIAICRMLVG   96 (462)
Q Consensus        27 ~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~------~l~~~r~l~G   96 (462)
                      +.++.+..+  ...+..+...+....+..+ ||+|||+.++.+..+..+..+++....   +..      ..+++.++..
T Consensus       301 G~~~~~a~~--an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~  378 (485)
T KOG0569|consen  301 GFTPEEAQY--ANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFI  378 (485)
T ss_pred             CCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            555555334  7788888888999999999 999999999999999998888877542   111      1233444444


Q ss_pred             ccccc-ccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccc
Q 012500           97 VGEAS-FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  175 (462)
Q Consensus        97 ~~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~  175 (462)
                      ++.+. ..|...-+.+|.+|++.|+.++++......++..+-...-..+.+..|= +.|++..+.++...+..++.+||+
T Consensus       379 ~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPET  457 (485)
T KOG0569|consen  379 ISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPET  457 (485)
T ss_pred             HhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCccc
Confidence            33332 4667778899999999999999999999888888777776677666664 788888999999999999999997


Q ss_pred             cCC
Q 012500          176 LKG  178 (462)
Q Consensus       176 ~~~  178 (462)
                      +.+
T Consensus       458 kgr  460 (485)
T KOG0569|consen  458 KGR  460 (485)
T ss_pred             CCC
Confidence            543

>TIGR00788 fbt folate/biopterin transporter

Probab=98.69  E-value=7.1e-08  Score=92.19  Aligned_cols=124  Identities=10%  Similarity=-0.051  Sum_probs=106.7

Q ss_pred             cccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhcc----------chhHHHHHHH
Q 012500           24 KFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSS----------FDFWSIAICR   92 (462)
Q Consensus        24 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~l~~~r   92 (462)
                      ..++.++.+.|.  ......++.+++....+++ +|++.|+++.++.++.+++.+.....          ++.+.++..-
T Consensus       281 ~~lG~s~~~~G~--~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~  358 (468)
T TIGR00788       281 QCLPGGPSFSGM--SKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDS  358 (468)
T ss_pred             ccCCCCcchhhh--HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehh
Confidence            347788888776  7777889999999999999 99999999999999999988665321          3444556677


Q ss_pred             HHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccc
Q 012500           93 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN  149 (462)
Q Consensus        93 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g  149 (462)
                      ++.+++.+....+...++.+..|++++|...++.+...++|..+++.+++.+.++.|
T Consensus       359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            888999999999999999999999999999999999999999999999999988766

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.69  E-value=1e-07  Score=86.45  Aligned_cols=129  Identities=19%  Similarity=0.254  Sum_probs=108.3

Q ss_pred             chhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccch--hHHHHHHHHHhhcccccccccccchhc
Q 012500           35 SSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFD--FWSIAICRMLVGVGEASFISLAAPFID  111 (462)
Q Consensus        35 ~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~g~~~~~~~~~i~  111 (462)
                      .++..+.+.++..++.++.|++ ||+|||+.+..+.....++.+..++..+  .+.+++.|+++|++.+...+...+++.
T Consensus        41 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  120 (338)
T COG0477          41 YGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLS  120 (338)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3558899999999999999999 9999999888888776666777777776  899999999999999999999999999


Q ss_pred             ccCCC-CCchhHHHHHHh-hhhhhhhhhhhHHHHhhcc--cchHHHHHHHHHHHHH
Q 012500          112 DNAPV-PQKTAWLSMFYM-CIPTGVALGYVYGGVVGSH--LNWRYAFWGEAILMLP  163 (462)
Q Consensus       112 ~~~~~-~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~--~gwr~~f~~~~~~~~~  163 (462)
                      |++|+ ++|+...+.... ...+|..+++.+++.+...  .+||..|.+.......
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (338)
T COG0477         121 EWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL  176 (338)
T ss_pred             HhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            99997 688999999888 5888889998777776654  6799977777655433

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.61  E-value=6.1e-06  Score=81.23  Aligned_cols=144  Identities=15%  Similarity=0.096  Sum_probs=108.2

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-c-ccCCchhHHHHHHHHHHHHHhhhccch--------hHHHHHHHHHh
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-C-SHNPFRLIGVGLSVWTFATAGCGSSFD--------FWSIAICRMLV   95 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-d-r~Grr~~l~~~~~~~~~~~~~~~~~~~--------~~~l~~~r~l~   95 (462)
                      ++.++++...  +...+....-+...+.|.+ | ++||++.+.++.++..++..+.+++..        ....+++-.+.
T Consensus        18 lg~~~~~A~~--i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLi   95 (654)
T TIGR00926        18 LGFSESTSTV--LFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALI   95 (654)
T ss_pred             cCCcHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHH
Confidence            4555554333  4445544445556666777 5 589999999999999999988876521        23356777888


Q ss_pred             hcccccccccccchhcccCCCC---CchhHHHHHHhhhhhhhhhhhhHHHHhhcc-------cchHHHHHHHHHHHHHHH
Q 012500           96 GVGEASFISLAAPFIDDNAPVP---QKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------LNWRYAFWGEAILMLPFA  165 (462)
Q Consensus        96 G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-------~gwr~~f~~~~~~~~~~~  165 (462)
                      .+|.|+.-|...+...|-++++   +|-..+.++..+.++|..+++.+..++.+.       .+|...|.+.++..++..
T Consensus        96 a~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~  175 (654)
T TIGR00926        96 ALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILAL  175 (654)
T ss_pred             HhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHH
Confidence            8999999999999999999754   366788899999999999999999888743       369999999988777666


Q ss_pred             HHHhhc
Q 012500          166 VLAFVI  171 (462)
Q Consensus       166 ~~~~~~  171 (462)
                      ++....
T Consensus       176 lvf~~g  181 (654)
T TIGR00926       176 IVFMAG  181 (654)
T ss_pred             HHHHHh
Confidence            555443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.59  E-value=1e-07  Score=83.32  Aligned_cols=124  Identities=6%  Similarity=0.030  Sum_probs=94.0

Q ss_pred             HHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccc--hhH--HHHHHHHHhhcccccccccccchhcccCCCC
Q 012500           43 TVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSF--DFW--SIAICRMLVGVGEASFISLAAPFIDDNAPVP  117 (462)
Q Consensus        43 ~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~  117 (462)
                      .+.-..+.++.+.+ ||+|||+.+....+++++..++.....  |..  .++.+|++.    .+.+.+.+.|..|.+|.+
T Consensus       391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafi----sg~fqvaYvYtPEVyPTa  466 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFI----SGAFQVAYVYTPEVYPTA  466 (528)
T ss_pred             HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH----hchheEEEEecCcccchh
Confidence            44456777888999 999999999999999999988876654  332  334566554    334557889999999999


Q ss_pred             CchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhcc
Q 012500          118 QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  172 (462)
Q Consensus       118 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  172 (462)
                      -|+...|.-....-+|.++.|.++  +....+-..+..+.+...++.++...++.
T Consensus       467 vRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffP  519 (528)
T KOG0253|consen  467 VRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFP  519 (528)
T ss_pred             hhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeee
Confidence            999999999999999999999999  33333344556666666667777666663

>PRK09669 putative symporter YagG; Provisional

Probab=98.59  E-value=1.2e-06  Score=83.62  Aligned_cols=147  Identities=17%  Similarity=0.056  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHH
Q 012500          255 IAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF  333 (462)
Q Consensus       255 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (462)
                      ...+.....+..+++.|+.+..|.++... ....+..+...+..++.|+++||.+.|..++|+++..+....++...+..
T Consensus        19 ~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f   98 (444)
T PRK09669         19 TACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTF   98 (444)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHH
Confidence            34444456667889999999999997666 34466677888899999999999766555555777666555554444433


Q ss_pred             Hhhh------hHHHHHHHHHHHHHHHhccccceeeeeccCC-cchhhHHHHHHHHHHhhhccccchhHHHHHHhhh
Q 012500          334 CLSS------LYGFLALFTVGELLVFATQAPVNYVCLHSVK-PSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  402 (462)
Q Consensus       334 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~  402 (462)
                      ..++      .....+...+...+......+..+...+..+ +++|.+..+......+. |..+++.+...+....
T Consensus        99 ~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~-G~~i~~~~~~pl~~~~  173 (444)
T PRK09669         99 YTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFI-GGLIVSVIALPLVDIL  173 (444)
T ss_pred             hCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence            3321      2233333344444555555566666666653 47788887777444444 7666765555555443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.59  E-value=2.8e-06  Score=75.82  Aligned_cols=129  Identities=12%  Similarity=0.060  Sum_probs=101.9

Q ss_pred             HHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHH---hhhhHHH
Q 012500          266 YWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC---LSSLYGF  341 (462)
Q Consensus       266 ~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  341 (462)
                      ...| .+++.++.+..+. .+......+..+..+..+++.+|+|.|     +-++.+..+.++.+.+...   ..+....
T Consensus        34 iLip-~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk-----~gi~lgL~l~avg~~lF~pAa~~~~y~~F  107 (422)
T COG0738          34 ILIP-HLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYK-----AGIVLGLLLYAVGAALFWPAASSKSYGFF  107 (422)
T ss_pred             hhHH-HHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence            3444 6788899997666 445777888899999999999999999     7777777777776666643   3355566


Q ss_pred             HHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhh
Q 012500          342 LALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  401 (462)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~  401 (462)
                      ++..++.+.+.+......+.++...-+++..+.-+.+.+.+... |++++|.+++.+..+
T Consensus       108 L~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~l-Ga~~gp~~g~~lils  166 (422)
T COG0738         108 LVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGL-GAILGPLLGSSLILS  166 (422)
T ss_pred             HHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhh-HHHHHHHHHHHHHHh
Confidence            77778888888888889999999998888778888888655554 999999999998883

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.57  E-value=7.6e-07  Score=78.16  Aligned_cols=165  Identities=18%  Similarity=0.115  Sum_probs=127.6

Q ss_pred             chhHHHHHHHHHHH-------hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-c-ccCCchhHHHHHHHH
Q 012500            2 SFCIHVLLCLIGLI-------LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-C-SHNPFRLIGVGLSVW   72 (462)
Q Consensus         2 ~~~i~~~~~~~~~~-------~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-d-r~Grr~~l~~~~~~~   72 (462)
                      +|.+..+.-.-+..       +|.+..|   -+.|..+.|.  +.+...+.++..++....+ + +-++|+..+...+++
T Consensus       210 aW~vtLfmGlqS~~~Y~~~~WLP~ili~---~G~sa~~aG~--llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~  284 (395)
T COG2807         210 AWQVTLFMGLQSLLYYIVIGWLPAILID---RGLSAAEAGS--LLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLM  284 (395)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHH---cCCCHHHhhh--HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            45555555333222       7877777   5888888776  8888888888888888888 6 567888888888888


Q ss_pred             HHHHHhhhccchhHHHHHHHHHhhcccccccccccchhcccCC-CCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccc-h
Q 012500           73 TFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-W  150 (462)
Q Consensus        73 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-w  150 (462)
                      .++...+.+.+.-..+.. -++.|+|.|..+|.+..++.+-.+ +++-++..++.|....+=..+||.+.|++.|..| |
T Consensus       285 l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw  363 (395)
T COG2807         285 LVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSW  363 (395)
T ss_pred             HHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCCh
Confidence            888888888775544444 499999999999999999988775 4556667777777777777889999999998764 9


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcc
Q 012500          151 RYAFWGEAILMLPFAVLAFVIK  172 (462)
Q Consensus       151 r~~f~~~~~~~~~~~~~~~~~~  172 (462)
                      +..+.......+...+..+..-
T Consensus       364 ~~~~~~l~~~~i~m~i~Gl~a~  385 (395)
T COG2807         364 SAPLVLLALATLLMLIFGLRAG  385 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcc
Confidence            9999988888777777766554

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.56  E-value=3.5e-07  Score=89.33  Aligned_cols=129  Identities=14%  Similarity=0.118  Sum_probs=109.2

Q ss_pred             hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeee
Q 012500          284 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVC  363 (462)
Q Consensus       284 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (462)
                      ...++..++..+|.++.|.++||+|||     +.+..+.++..+..+.....++.+...+.=++.|++.+........+.
T Consensus       122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk-----~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~  196 (521)
T KOG0255|consen  122 LGQSLFFLGVLVGSLIFGPLSDRFGRK-----PVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLV  196 (521)
T ss_pred             HHHHHHHHHHHHHHhhheehHhhcccH-----HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhh
Confidence            344778899999999999999999999     899999999888888888899999999999999999999999999999


Q ss_pred             eccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Q 012500          364 LHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGI  422 (462)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  422 (462)
                      .|.+++++|+.+..+ ...... ++.+++...+++..   +|+..++......+...+.
T Consensus       197 ~E~~~~~~R~~~~~~-~~~~~~-~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  197 AEIVSPKQRGLALTL-GGFFFV-GGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLL  250 (521)
T ss_pred             eeecCcchhhHHHHH-HHHHHH-HHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHH
Confidence            999999999999999 566666 66778888888887   5777777766665544444

>PRK11462 putative transporter; Provisional

Probab=98.56  E-value=2e-06  Score=82.16  Aligned_cols=150  Identities=13%  Similarity=0.048  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHH
Q 012500          253 GYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT  331 (462)
Q Consensus       253 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (462)
                      .-+..+........|+..|+.+..|.++... .+..+.-+...+.-++.|+++||...|..++|+++..+....++...+
T Consensus        17 g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~l   96 (460)
T PRK11462         17 GDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVL   96 (460)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHH
Confidence            3344455566677889999999999997655 334556677788899999999998766666667887776666655555


Q ss_pred             HHHhhh------hHHHHHHHHHHHHHHHhccccceeeeeccCCc-chhhHHHHHHHHHHhhhccccchhHHHHHHhhhc
Q 012500          332 AFCLSS------LYGFLALFTVGELLVFATQAPVNYVCLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  403 (462)
Q Consensus       332 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g  403 (462)
                      ++..++      .....+..++...+......|..++..+..++ ++|++..+....... +|..+++.+...+.+..|
T Consensus        97 lf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~-iG~~~~~~~~~plv~~~g  174 (460)
T PRK11462         97 AYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLAT-AGGMLSTVLMMPLVNLIG  174 (460)
T ss_pred             HHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhC
Confidence            443331      22233444445666666666777777777664 899999998854444 477777766655555544

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.54  E-value=3.7e-05  Score=70.76  Aligned_cols=365  Identities=9%  Similarity=-0.042  Sum_probs=173.6

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc--cccCCchhHH------HHHHHHHHHHHhh--------
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ--CSHNPFRLIG------VGLSVWTFATAGC--------   79 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l--dr~Grr~~l~------~~~~~~~~~~~~~--------   79 (462)
                      +|-++++.. -+.+-+|.+.=-+.+-.+---++++|+.+.+  .|+||||.-+      .|..+..++.-..        
T Consensus        23 iPflL~~~~-~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m~~l~~~i~~~~~~~~~  101 (544)
T PF13000_consen   23 IPFLLQSMA-KKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILMLYLSYNISQWLLFDGV  101 (544)
T ss_pred             chhhhcccc-CCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHHHHHHHhccchhhccccc
Confidence            675555511 1455555554112233333467899999988  8999999533      3333333333220        


Q ss_pred             --hc-------cch--hHHHHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcc-
Q 012500           80 --GS-------SFD--FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-  147 (462)
Q Consensus        80 --~~-------~~~--~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-  147 (462)
                        .+       .++  ...+...-++.=+-.+....+...+.-....+++++.|......+.+.|..++..+--.+.+. 
T Consensus       102 ~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlalns~~  181 (544)
T PF13000_consen  102 DDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALNSPD  181 (544)
T ss_pred             chhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhCCHH
Confidence              00       011  112233333444444556666677777777889999988888888888887776554333320 


Q ss_pred             ------------cc---hHHHHHHHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccc
Q 012500          148 ------------LN---WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISD  212 (462)
Q Consensus       148 ------------~g---wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (462)
                                  .|   -..-..+.|...++..+...++.+|.+.....++.++..          ..+.+   .++...
T Consensus       182 f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~----------~~~~~---~~~~~~  248 (544)
T PF13000_consen  182 FCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPIN----------KSDGK---SKEISI  248 (544)
T ss_pred             HHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCccccccc----------ccccc---ccccce
Confidence                        11   111122233333444455555555533221111111000          00000   000000


Q ss_pred             hhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchhhhhhhHHHh
Q 012500          213 QASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVC  292 (462)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  292 (462)
                      +.++.+   ...+......++.-+.+.+++|-|++..+.+.....-.++...-.-...=+.+ .|++......   ..+.
T Consensus       249 ~~~~~~---~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LAl---~~li  321 (544)
T PF13000_consen  249 EYDESD---VISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLAL---LVLI  321 (544)
T ss_pred             eccccc---ccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhHH---HHHH
Confidence            000000   00000001223334456667788888887776666666554444433333444 5666544422   2234


Q ss_pred             hhhhhhhhhHHHhhhcccccc----------------chhH----------HHHHHH---HHHHHH-HHHHHhh-----h
Q 012500          293 GIVGTISGGFILDQMGATISN----------------AFKL----------LSAATF---LGAISC-LTAFCLS-----S  337 (462)
Q Consensus       293 ~~~~~~~~g~l~d~~~~~~~~----------------~~~~----------~~~~~~---~~~~~~-~~~~~~~-----~  337 (462)
                      .++..++.|+++.|+-+..+.                ..+.          ...+..   +.++.. ......+     +
T Consensus       322 ~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP~~g~v~  401 (544)
T PF13000_consen  322 DFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFPSDGPVP  401 (544)
T ss_pred             hhhHHHHHHHHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCCCCCCcc
Confidence            444555555555555322110                0011          111111   111110 0001111     1


Q ss_pred             hH---HHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhh
Q 012500          338 LY---GFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  402 (462)
Q Consensus       338 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~  402 (462)
                      .+   .++..-.+..+.....+....++-++..+|..-|+.+.+.|+..|. |+---..+.=++.|..
T Consensus       402 ~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNL-GGtWP~~~vL~lVD~f  468 (544)
T PF13000_consen  402 TYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNL-GGTWPRTFVLWLVDYF  468 (544)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhc-CCCchHHHHHHHhhhc
Confidence            11   1222223344444466667788888889999999999999999998 6665555666666654

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.51  E-value=2.6e-06  Score=81.95  Aligned_cols=148  Identities=8%  Similarity=0.021  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHH
Q 012500          252 LGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  330 (462)
Q Consensus       252 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  330 (462)
                      +..+..+.....+..|++.|+.+..|.++... .+..+.-+...+..++.|+++||...|..++|+++..+....++...
T Consensus        13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~   92 (473)
T PRK10429         13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLF   92 (473)
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHH
Confidence            33445566666777889999999999997655 33466677778889999999996633333334666666666555544


Q ss_pred             HHHHhhh------hHHHHHHHHHHHHHHHhccccceeeeeccC-CcchhhHHHHHHHHHHhhhccccchhHHHHHHh
Q 012500          331 TAFCLSS------LYGFLALFTVGELLVFATQAPVNYVCLHSV-KPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  400 (462)
Q Consensus       331 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~  400 (462)
                      ++...++      .....+..++...+......+..+...+.. ++++|.+..+......+. |+.+.+.+...+.+
T Consensus        93 llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~i-g~~~~~~~~~~~~~  168 (473)
T PRK10429         93 LLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASL-AGFVTAGFTLPFVN  168 (473)
T ss_pred             HHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            4443221      112333334455566666777777777776 458899988885444444 54555544444433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.47  E-value=6.5e-06  Score=76.32  Aligned_cols=153  Identities=18%  Similarity=0.062  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchhh-hhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHH
Q 012500          250 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMM-FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS  328 (462)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  328 (462)
                      .-..-+..+........|+..|+.+..|.++.... +..+.-+...+.-++.|.++||..+|..++|++++.+.+..++.
T Consensus        17 Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~   96 (467)
T COG2211          17 YGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIV   96 (467)
T ss_pred             hcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHH
Confidence            33344555666677778999999999999976553 33455566788889999999999888888889988887777776


Q ss_pred             HHHHHHhh------hhHHHHHHHHHHHHHHHhccccceeeeeccCCc-chhhHHHHHHHHHHhhhccccchhHHHHHHhh
Q 012500          329 CLTAFCLS------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  401 (462)
Q Consensus       329 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~  401 (462)
                      ..+.+..+      ......+...+.+.++.....|..++..+..++ ++|.+..+.-....+. |..+...+.+.+...
T Consensus        97 ~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~-g~~l~~~~~~plv~~  175 (467)
T COG2211          97 AVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASL-GGLLVAVLFPPLVKL  175 (467)
T ss_pred             HHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            66666554      233445556667777777777777777777555 7899999988544444 777777777777766


Q ss_pred             hc
Q 012500          402 VN  403 (462)
Q Consensus       402 ~g  403 (462)
                      .+
T Consensus       176 ~g  177 (467)
T COG2211         176 FG  177 (467)
T ss_pred             hC
Confidence            65

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.47  E-value=1.3e-06  Score=83.07  Aligned_cols=148  Identities=15%  Similarity=0.103  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHH
Q 012500          255 IAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF  333 (462)
Q Consensus       255 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (462)
                      +..+........+++.|+.+..+.++... .......+...+..++.|+++||...|..++|+++..+....++...+..
T Consensus        11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf   90 (428)
T PF13347_consen   11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLF   90 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhh
Confidence            34444555566788889999999997555 33355667778888899999995443333334666666666666555555


Q ss_pred             Hh-h-------hhHHHHHHHHHHHHHHHhccccceeeeeccCCc-chhhHHHHHHHHHHhhhccccchhHHHHHHhhhc
Q 012500          334 CL-S-------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  403 (462)
Q Consensus       334 ~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g  403 (462)
                      .. +       ......+..++...+......+..+...+..++ ++|.+..+..+..... |..+...+.+.+.+..|
T Consensus        91 ~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~-g~~l~~~~~~~l~~~~g  168 (428)
T PF13347_consen   91 SPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMI-GSLLASFLAPILVSWFG  168 (428)
T ss_pred             ccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHH-HHHHHHHHhhhhhhhhc
Confidence            43 2       112234455555677777777888888888875 7899988888544444 77666666776666655

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.46  E-value=1.4e-06  Score=82.50  Aligned_cols=134  Identities=19%  Similarity=0.154  Sum_probs=106.6

Q ss_pred             hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeee
Q 012500          284 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVC  363 (462)
Q Consensus       284 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (462)
                      ...+++.++.+++.+.++.+.||++..     +.+....++-....++....++.+..++.-++.|++-+..+|....++
T Consensus        85 ~~~t~F~v~Yii~~~p~~~L~~r~~ls-----~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~l  159 (495)
T KOG2533|consen   85 VLDTVFYVGYIIGQFPSGLLGDRFPLS-----KGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAIL  159 (495)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHhCChH-----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHH
Confidence            445788999999999999999999965     666666666666665666688899999999999999999999999999


Q ss_pred             eccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhh-----hcchhHHHHHHHHHHHHHHHHH
Q 012500          364 LHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH-----VNNWRKTTLALTSIFFLAAGIW  423 (462)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~-----~g~~~~~~~~~~~~~~~~~~~~  423 (462)
                      ..-+.+++|+.-+|+.+...+. |+++|+.+...+.+.     .-+|++.|++-+++.+...++.
T Consensus       160 g~wy~~~e~g~r~~~~~a~~~~-g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~  223 (495)
T KOG2533|consen  160 GNWYGKSERGLRMGIWYASASL-GNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVV  223 (495)
T ss_pred             HhhcChhhhhhhHHHHHHhcch-hhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheE
Confidence            9999999999999999655555 888888777665431     1258888888887665555443

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.43  E-value=1.8e-05  Score=69.88  Aligned_cols=337  Identities=9%  Similarity=-0.066  Sum_probs=171.7

Q ss_pred             HhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc--cccCCchh------HHHHHHHHHHHHHhh------h
Q 012500           15 ILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ--CSHNPFRL------IGVGLSVWTFATAGC------G   80 (462)
Q Consensus        15 ~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l--dr~Grr~~------l~~~~~~~~~~~~~~------~   80 (462)
                      .+|.+++.   -+.|-++.+.--+......--++++|+.+.+  .|+||||.      +++|.++..++...-      +
T Consensus        52 ~iP~lL~a---k~vSyt~~a~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng  128 (510)
T KOG3574|consen   52 AIPLLLQA---KGVSYTSQAIFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNG  128 (510)
T ss_pred             hhHHHhcC---CCcchhhhhhhhhhhhHHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCC
Confidence            47866663   3556555554113333444556888888866  78999994      333333333333221      1


Q ss_pred             ccchhHHHHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhc-------ccchH--
Q 012500           81 SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-------HLNWR--  151 (462)
Q Consensus        81 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-------~~gwr--  151 (462)
                      -.++...+...-++.-+..+....+...+.-.+..+++.|-+......+.+.|..++..+--.+..       ..+|.  
T Consensus       129 ~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~  208 (510)
T KOG3574|consen  129 GLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPLD  208 (510)
T ss_pred             CCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcCc
Confidence            123444444455666677777777888888888888999998888888888887777654322221       00111  


Q ss_pred             -------HHHHHHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhcccc
Q 012500          152 -------YAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGE  224 (462)
Q Consensus       152 -------~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (462)
                             .-.+..+...++...+..+...|         +++.. .+                     +.+         
T Consensus       209 ~g~ItL~gy~~fwg~~~~vat~Lv~~~kke---------~~~~~-~~---------------------e~~---------  248 (510)
T KOG3574|consen  209 QGFITLAGYLWFWGALFIVATTLVALLKKE---------NDESV-DE---------------------ELE---------  248 (510)
T ss_pred             cceEEhhHHHHHHHHHHHHHHHHHHHhcCC---------Cchhh-hh---------------------hhh---------
Confidence                   11222223223333333333211         11100 00                     000         


Q ss_pred             ccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHH
Q 012500          225 SRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFI  303 (462)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l  303 (462)
                          ...++..+-++++++-|.+..........-.++.+.....+.-+.+ .|.+.... .+........++.....|++
T Consensus       249 ----~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle-~Gv~ke~Lal~~v~~~plqI~l~~~~gk~  323 (510)
T KOG3574|consen  249 ----LGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE-HGVPKEELALIAVPLVPLQIALPLYIGKW  323 (510)
T ss_pred             ----cCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH-cCCChhHheeeeeehhhHHHhhhhhheee
Confidence                0111112345666777777766666666666666666666666665 45554333 22222223333333333333


Q ss_pred             Hhhhcccccc--ch--hHHHHHHHHHHHHHHHHHHhhh---------hHHHHHHHHHHHHHHHhccccceeeeeccCCcc
Q 012500          304 LDQMGATISN--AF--KLLSAATFLGAISCLTAFCLSS---------LYGFLALFTVGELLVFATQAPVNYVCLHSVKPS  370 (462)
Q Consensus       304 ~d~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (462)
                      ...  .|...  .+  +.=+..................         ....+....+...+....+...++..++..+|.
T Consensus       324 ta~--~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~  401 (510)
T KOG3574|consen  324 TAG--PRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPA  401 (510)
T ss_pred             cCC--CCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcc
Confidence            321  11100  00  1111122222222111111111         111122233444444455556677888889999


Q ss_pred             hhhHHHHHHHHHHhhhccccchhHHHHHHhhh
Q 012500          371 LRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  402 (462)
Q Consensus       371 ~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~  402 (462)
                      ..|+.+.+.|...+. |+-.-..+..++.|..
T Consensus       402 iggTymTlLNTLsnL-Gg~wp~tv~l~l~D~l  432 (510)
T KOG3574|consen  402 IGGTYMTLLNTLSNL-GGNWPGTVALWLADGL  432 (510)
T ss_pred             cCccHHHHHHHHHHh-cCCcHHHHHHHhcccC
Confidence            999999999988888 5554555777887765

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.34  E-value=4.7e-06  Score=81.08  Aligned_cols=128  Identities=16%  Similarity=0.132  Sum_probs=102.2

Q ss_pred             hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeee
Q 012500          284 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVC  363 (462)
Q Consensus       284 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (462)
                      .+.+...+++.++.++.|+++|++|||     +.+..+.+...+..++....++.....+.=++.|++.+......+.+.
T Consensus        93 ~~~s~~~lga~~g~l~~g~l~d~~GRk-----~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~  167 (513)
T KOG0254|consen   93 LLTSILNLGALVGSLLAGRLGDRIGRK-----KTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYI  167 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhH
Confidence            566788899999999999999999999     888888888888888888888999999999999999998888888888


Q ss_pred             eccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhh-cchhHHHHHHHHHHHH
Q 012500          364 LHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV-NNWRKTTLALTSIFFL  418 (462)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~  418 (462)
                      .|..|++.||...+..+.... +|..++ .+.+...++. .+|+..+....+..+.
T Consensus       168 sEiap~~~RG~l~~~~~l~~~-~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~  221 (513)
T KOG0254|consen  168 SEIAPAHIRGTLVSLYQLFIT-IGILLG-YCINYGTSKVYAGWRIPLGLALIPAVI  221 (513)
T ss_pred             hhcCChhhhHHHHHHHHHHHH-HHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHH
Confidence            898988999999999976666 477766 4555555433 2466555444444333

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.29  E-value=3.8e-08  Score=94.33  Aligned_cols=126  Identities=13%  Similarity=0.108  Sum_probs=94.2

Q ss_pred             hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHhccccce
Q 012500          284 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS---SLYGFLALFTVGELLVFATQAPVN  360 (462)
Q Consensus       284 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  360 (462)
                      ...+...++.++|.++.|++.||+|||     +.+..+..+..+..++....+   +.+...+.-++.|++.+...+...
T Consensus        50 ~~~~~~~~g~~~G~~~~g~~~d~~GRk-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~  124 (451)
T PF00083_consen   50 LLTSSFFIGAIVGALIFGFLADRYGRK-----PALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP  124 (451)
T ss_pred             HHHHHHHhhhccccccccccccccccc-----cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            345777899999999999999999999     777777777777766666666   777788888889999999999999


Q ss_pred             eeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhc---chhHHHHHHHHHH
Q 012500          361 YVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN---NWRKTTLALTSIF  416 (462)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g---~~~~~~~~~~~~~  416 (462)
                      .++.|..|++.|+...++.+.... +|..++..+.-.. ....   .|+..+.+..+..
T Consensus       125 ~~~~E~~~~~~R~~~~~~~~~~~~-~G~~~~~~~~~~~-~~~~~~~~Wr~~~~~~~~~~  181 (451)
T PF00083_consen  125 IYISEIAPPKHRGFLSSLFQLFWA-LGILLASLIGYIV-SYYSDNWGWRILLIFGAIPS  181 (451)
T ss_pred             cccccccccccccccccccccccc-ccccccccccccc-cccccccccccccccccccc
Confidence            999999999999999998864444 4777776443333 2222   2555544444443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.28  E-value=0.0015  Score=62.10  Aligned_cols=230  Identities=13%  Similarity=0.108  Sum_probs=127.5

Q ss_pred             HHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhcc---------ch----------------------hHHHHHHH
Q 012500           45 TQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSS---------FD----------------------FWSIAICR   92 (462)
Q Consensus        45 ~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~---------~~----------------------~~~l~~~r   92 (462)
                      ..++...+..++ +|++|.+++-.....+.....+.++.         ++                      .|.+.+.-
T Consensus        71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY  150 (491)
T PF03219_consen   71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY  150 (491)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence            344556677888 99999998877666666555555542         11                      11222222


Q ss_pred             HHhhcccccccc-cccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhc---------ccchHHHHHHHHHHHH
Q 012500           93 MLVGVGEASFIS-LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS---------HLNWRYAFWGEAILML  162 (462)
Q Consensus        93 ~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~---------~~gwr~~f~~~~~~~~  162 (462)
                      ++.-+-.....+ .-..+..|.++.+|-.|..+++..+.++|.+++..+...+.+         ...|...+.......+
T Consensus       151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~  230 (491)
T PF03219_consen  151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVL  230 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHH
Confidence            222222222222 346778999999999999999999999999999998888877         2346544332221111


Q ss_pred             HHHHHH---hhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHH
Q 012500          163 PFAVLA---FVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTK  239 (462)
Q Consensus       163 ~~~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (462)
                      +.++..   ...+.+....  +++..+..                           ..++++       +...+..++++
T Consensus       231 ~~g~~i~~~~~~~~~~vl~--~~~~~~~~---------------------------~~~kk~-------k~k~s~~es~k  274 (491)
T PF03219_consen  231 ILGIVIILLYRYMNKNVLT--DPRFYPSA---------------------------KKKKKK-------KPKMSLKESFK  274 (491)
T ss_pred             HHHHHHHHHHHHHHHHccC--ccccchhh---------------------------hccccc-------CCCccHHHHHH
Confidence            111111   1122111100  00000000                           000000       11123346788


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-h---hhhhHHHhhhhhhhhhhHHHhhhccc
Q 012500          240 VLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-M---FGGVTIVCGIVGTISGGFILDQMGAT  310 (462)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~g~l~d~~~~~  310 (462)
                      .++++|.+..+++...+++...+.+....-...++.+..+.+-. .   +....++..++..++++.+.+|+|-+
T Consensus       275 ~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~  349 (491)
T PF03219_consen  275 LLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWR  349 (491)
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            89999999988887777777766665544445555553332211 1   22444555566667778888888865

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=98.25  E-value=7e-05  Score=70.36  Aligned_cols=98  Identities=11%  Similarity=-0.060  Sum_probs=56.6

Q ss_pred             hHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHh-hhc----c---chhHHHHHHHHHhhcccccccccccc
Q 012500           38 NVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAG-CGS----S---FDFWSIAICRMLVGVGEASFISLAAP  108 (462)
Q Consensus        38 ~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~-~~~----~---~~~~~l~~~r~l~G~~~g~~~~~~~~  108 (462)
                      +.....+..++..+..-.+ .|+..|.=+..++++..+..++ ..+    .   ..++..++.-++.|++.+........
T Consensus        50 ~~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~g  129 (437)
T TIGR00939        50 YTLASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFG  129 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchh
Confidence            3445566666666666666 6666533333333322222111 111    1   24666777888899999988887777


Q ss_pred             hhcccCCCCCchhHHHHHHhhhhhhhhhhhhH
Q 012500          109 FIDDNAPVPQKTAWLSMFYMCIPTGVALGYVY  140 (462)
Q Consensus       109 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~  140 (462)
                      +.+ .+|+    +.++.+..+.+++++++..+
T Consensus       130 la~-~fp~----~~~~a~~~G~g~aGv~~s~~  156 (437)
T TIGR00939       130 LAG-VFPS----TYSSAVMSGQGLAGVLTSLA  156 (437)
T ss_pred             hcc-cCCH----HHHHHHHhcchhHHHHHHHH
Confidence            777 5553    34566666666666665544

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.23  E-value=2.9e-05  Score=70.13  Aligned_cols=163  Identities=16%  Similarity=0.143  Sum_probs=124.7

Q ss_pred             hhHHHHHHHHHHHhhhhhhhcc---ccccccccccchhhHHHHHHHHHhhhhhhccc--cccCCchhHHHHHHHHHHHHH
Q 012500            3 FCIHVLLCLIGLILKRSMKKKK---FLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ--CSHNPFRLIGVGLSVWTFATA   77 (462)
Q Consensus         3 ~~i~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l--dr~Grr~~l~~~~~~~~~~~~   77 (462)
                      +++++++...++.....+-|-+   -++++..|...  +......|.+++....|++  .|.++|++-..++....++..
T Consensus       213 f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~--Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~  290 (403)
T PF03209_consen  213 FFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTR--LTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFA  290 (403)
T ss_pred             HHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Confidence            3455555566665433332211   15666666434  8888889999998889988  478888888888888877776


Q ss_pred             hhh---ccchhHHHHHHHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcc-------
Q 012500           78 GCG---SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------  147 (462)
Q Consensus        78 ~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-------  147 (462)
                      +..   ...+.+.+...-++.|++.|.......+.+.|..++++.|.++|.+.....++..++..+++.+.|.       
T Consensus       291 lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~  370 (403)
T PF03209_consen  291 LIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGN  370 (403)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            644   4467889999999999999999999999999999999999999999999999999999999887652       


Q ss_pred             ---cchHHHHHHHHHHHHHHHHH
Q 012500          148 ---LNWRYAFWGEAILMLPFAVL  167 (462)
Q Consensus       148 ---~gwr~~f~~~~~~~~~~~~~  167 (462)
                         .+|-.+|.+.++..++...+
T Consensus       371 ~~~~aY~~VF~lEa~ll~~a~~l  393 (403)
T PF03209_consen  371 SPALAYGVVFALEAVLLLAALVL  393 (403)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHH
Confidence               35778888887655444433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.16  E-value=3.1e-06  Score=76.64  Aligned_cols=133  Identities=10%  Similarity=-0.063  Sum_probs=99.5

Q ss_pred             HHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchh----HHHHHHHHHhhc-ccccccccccchhcccCCCC
Q 012500           44 VTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDF----WSIAICRMLVGV-GEASFISLAAPFIDDNAPVP  117 (462)
Q Consensus        44 ~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~----~~l~~~r~l~G~-~~g~~~~~~~~~i~~~~~~~  117 (462)
                      .+++.+-++...+ |+.|||+..+.|.+++++..+..+...|.    ..+++.-.+..+ +.-+-......+-+|.+|.+
T Consensus       359 ~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPar  438 (538)
T KOG0252|consen  359 CSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPAR  438 (538)
T ss_pred             HccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHH
Confidence            3444577778888 99999999999999999999999988771    112222222222 12223334456678999999


Q ss_pred             CchhHHHHHHhhhhhhhhhhhhHHHHhhc-----ccchHHHHHHHHHHHHHHHHHHhhccccccC
Q 012500          118 QKTAWLSMFYMCIPTGVALGYVYGGVVGS-----HLNWRYAFWGEAILMLPFAVLAFVIKPLQLK  177 (462)
Q Consensus       118 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-----~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~  177 (462)
                      -|+..-|+..++.-.|.++|...-.++.+     ..+-|+++++.+...++..+.. +++||+..
T Consensus       439 vR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T-~l~pEtk~  502 (538)
T KOG0252|consen  439 VRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT-LLIPETKG  502 (538)
T ss_pred             HhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee-EEeecccc
Confidence            99999999999999999999999899888     7789999999988776655544 44477643

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.15  E-value=1.3e-05  Score=63.00  Aligned_cols=101  Identities=10%  Similarity=0.089  Sum_probs=83.4

Q ss_pred             HHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccccccchhcccCCCCCchh
Q 012500           43 TVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTA  121 (462)
Q Consensus        43 ~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~  121 (462)
                      .....+++++...+ +++|.|+.+++|.+.+.+-.... +-++.+.++.+-.+.|++.+..+++...++.+..++++|++
T Consensus        47 Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~  125 (156)
T PF05978_consen   47 YGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGR  125 (156)
T ss_pred             HHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhh
Confidence            33344555556666 77799999999999988655543 56778899999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhhhhhHHHHh
Q 012500          122 WLSMFYMCIPTGVALGYVYGGVV  144 (462)
Q Consensus       122 ~~~~~~~~~~~G~~~g~~~~~~l  144 (462)
                      ..+++......+.++|.++...+
T Consensus       126 ~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  126 NTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888888887766554

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.12  E-value=2.4e-05  Score=66.87  Aligned_cols=132  Identities=11%  Similarity=0.130  Sum_probs=77.3

Q ss_pred             HHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHh-h-
Q 012500          260 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL-S-  336 (462)
Q Consensus       260 ~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-  336 (462)
                      ..+.+..|.|. +++..|.+..+. .+.....++..+ .+..|.+.|++|.+     ..+.++.............. . 
T Consensus        17 t~Y~Fs~yS~~-Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~-----~~l~iG~~~~~~GY~~~~l~~~~   89 (250)
T PF06813_consen   17 TTYTFSAYSPQ-LKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPW-----VVLLIGAVLGFVGYGLLWLAVSG   89 (250)
T ss_pred             cccchhhhhHH-HHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchH-----HHHHHHHHHHHHHHHHHHHHHhC
Confidence            35566666774 456788887665 444556666665 47889999999998     66666666655554444332 1 


Q ss_pred             -----hhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHh
Q 012500          337 -----SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  400 (462)
Q Consensus       337 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~  400 (462)
                           +.|......++.+.+.............+.+| ++||++.|+.....+. ++.+-..+...+.+
T Consensus        90 ~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GL-Saai~t~i~~~~f~  156 (250)
T PF06813_consen   90 RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGL-SAAIFTQIYSAFFG  156 (250)
T ss_pred             ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHh-HHHHHHHHHHHHcC
Confidence                 22333333333333322222333333445665 6799999999766666 55544445444444

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=98.04  E-value=4.1e-05  Score=65.59  Aligned_cols=134  Identities=9%  Similarity=-0.113  Sum_probs=96.2

Q ss_pred             hhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccccccchhcccC
Q 012500           36 SVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA  114 (462)
Q Consensus        36 s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~  114 (462)
                      +.+..+-.+..++.-+.+..+ ||+.--.=..+..++.+.+..+.+++++.++-+.+-.+..++.|.....-.++-+. +
T Consensus        65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~-Y  143 (409)
T KOG3880|consen   65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR-Y  143 (409)
T ss_pred             chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-C
Confidence            336677777888888888888 98765555666778888999999999999999999999988888777655544443 3


Q ss_pred             CCCCchhHHHHHHhhhhhhhhhhhhHHHHhhc--ccchHHHHHHHHHHHHHHHHHHhhcccc
Q 012500          115 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS--HLNWRYAFWGEAILMLPFAVLAFVIKPL  174 (462)
Q Consensus       115 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~--~~gwr~~f~~~~~~~~~~~~~~~~~~p~  174 (462)
                      |+    ...+.++.+.+.+.++|..--..+.+  ...-|...++...+..+.+...++.+++
T Consensus       144 ~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~  201 (409)
T KOG3880|consen  144 PS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKS  201 (409)
T ss_pred             CC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCC
Confidence            32    23455666666667777655555554  3457888888888777777777777644

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.98  E-value=1.6e-05  Score=54.62  Aligned_cols=75  Identities=20%  Similarity=0.142  Sum_probs=64.5

Q ss_pred             HHHHHHhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHH
Q 012500           10 CLIGLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSI   88 (462)
Q Consensus        10 ~~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l   88 (462)
                      |.++.++|...++   .+.|.++.++  +.+...+|++++++...++ ++..+++.+..+.+...+..+.+++.++.+.+
T Consensus         9 FayTplLP~M~~~---~~ls~~~ag~--lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w   83 (85)
T PF06779_consen    9 FAYTPLLPLMQAD---GGLSLSQAGW--LASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW   83 (85)
T ss_pred             HHHHhHhHHHHHh---cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            6677889955555   6778888555  9999999999999999999 99888999999999999999999999988765


Q ss_pred             H
Q 012500           89 A   89 (462)
Q Consensus        89 ~   89 (462)
                      .
T Consensus        84 ~   84 (85)
T PF06779_consen   84 S   84 (85)
T ss_pred             h
Confidence            3

Note that many members are hypothetical proteins.

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.86  E-value=0.0017  Score=63.12  Aligned_cols=132  Identities=16%  Similarity=0.135  Sum_probs=94.1

Q ss_pred             hHHHHHHHHHhhhhhhccc-cc-cCCchhHHHHHHHHHHHHHhhhccch-------------------------hHHHHH
Q 012500           38 NVLEFTVTQLVCSSHHCSQ-CS-HNPFRLIGVGLSVWTFATAGCGSSFD-------------------------FWSIAI   90 (462)
Q Consensus        38 ~~~~~~~~~~~~~~~~g~l-dr-~Grr~~l~~~~~~~~~~~~~~~~~~~-------------------------~~~l~~   90 (462)
                      ..+.+.-......+..+.+ |- +||-+++.++.++..++..+..++..                         ...++.
T Consensus        78 ~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~  157 (571)
T KOG1237|consen   78 NVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYG  157 (571)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHH
Confidence            3333333333444444555 43 57779999998888888655443311                         135666


Q ss_pred             HHHHhhcccccccccccchhcccCC---CC---CchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHH
Q 012500           91 CRMLVGVGEASFISLAAPFIDDNAP---VP---QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPF  164 (462)
Q Consensus        91 ~r~l~G~~~g~~~~~~~~~i~~~~~---~~---~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~  164 (462)
                      +.-+..+|.|+.-|...++-+|-++   ++   ++...+.++....++|..++..+-.+.-++.+|.+-|.+..+...+.
T Consensus       158 ~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~la  237 (571)
T KOG1237|consen  158 ALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALA  237 (571)
T ss_pred             HHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHH
Confidence            7778888999999999999999998   32   23367889999999999999998888888899999999887765554


Q ss_pred             HHHHh
Q 012500          165 AVLAF  169 (462)
Q Consensus       165 ~~~~~  169 (462)
                      .++.+
T Consensus       238 i~iF~  242 (571)
T KOG1237|consen  238 ILIFL  242 (571)
T ss_pred             HHHHH
Confidence            44433

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.81  E-value=0.03  Score=52.20  Aligned_cols=238  Identities=15%  Similarity=0.063  Sum_probs=129.9

Q ss_pred             hhhHHHHHH-HHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhcc---------ch--------------------
Q 012500           36 SVNVLEFTV-TQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSS---------FD--------------------   84 (462)
Q Consensus        36 s~~~~~~~~-~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~---------~~--------------------   84 (462)
                      +.+-+...+ ..++..++..++ +++.|.+++-.-+..+....+++++.         ++                    
T Consensus        64 ~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~il  143 (509)
T COG3202          64 SFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFIL  143 (509)
T ss_pred             HHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeE
Confidence            445555555 566778888899 99999999887777777777776653         11                    


Q ss_pred             ---hHHHHHHHHHhhcccccccc-cccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhccc----------ch
Q 012500           85 ---FWSIAICRMLVGVGEASFIS-LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL----------NW  150 (462)
Q Consensus        85 ---~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~----------gw  150 (462)
                         .|..-+.-.+.=+-...... .-.....|....+|-.|..+.++.+.+++..++..+..++.++.          .-
T Consensus       144 i~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~  223 (509)
T COG3202         144 IVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLL  223 (509)
T ss_pred             eecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHH
Confidence               01111111111111111111 22445778888889999999999999999999999988887631          13


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhh
Q 012500          151 RYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQ  230 (462)
Q Consensus       151 r~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (462)
                      +..+.+.++.++++..+..+.-+...+......+.+..                             ++++       ..
T Consensus       224 ~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~k-----------------------------k~~~-------k~  267 (509)
T COG3202         224 QILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKKK-----------------------------KKKK-------KL  267 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhcc-----------------------------cccc-------cc
Confidence            44455555544444443333321111110000000000                             0000       11


Q ss_pred             hhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHhCCCcc-hhh---hhhhHHHh-hhhhhhhhhHHH
Q 012500          231 LSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSY-WGPKAGYNIYHMSNA-DMM---FGGVTIVC-GIVGTISGGFIL  304 (462)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~-~~~---~~~~~~~~-~~~~~~~~g~l~  304 (462)
                      .....++.+.+.++|.++.+.+...+++.+.+.+-. |-.. .+..+..+.. ...   +....++. .++...+++-+.
T Consensus       268 k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~-ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~i  346 (509)
T COG3202         268 KLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSG-IKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLI  346 (509)
T ss_pred             cCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            122345688889999999988888887777655543 2222 2222222211 111   12233333 345556677777


Q ss_pred             hhhccc
Q 012500          305 DQMGAT  310 (462)
Q Consensus       305 d~~~~~  310 (462)
                      +|.|-.
T Consensus       347 r~~GW~  352 (509)
T COG3202         347 RRVGWF  352 (509)
T ss_pred             HHhhHH
Confidence            777754

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.78  E-value=5.4e-05  Score=70.43  Aligned_cols=108  Identities=19%  Similarity=0.212  Sum_probs=87.4

Q ss_pred             hhHHHHHHHHHHHHHhhhccc---h------hHHHHHHHHHhhcccccccccccchhcccCCCC---CchhHHHHHHhhh
Q 012500           63 RLIGVGLSVWTFATAGCGSSF---D------FWSIAICRMLVGVGEASFISLAAPFIDDNAPVP---QKTAWLSMFYMCI  130 (462)
Q Consensus        63 ~~l~~~~~~~~~~~~~~~~~~---~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~  130 (462)
                      |++.++.++..+|.++..++.   +      .+.++++-.+.++|.|+.-|...++.+|-++++   +|.+.+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            567888888888888844432   2      367889999999999999999999999999865   3667888999999


Q ss_pred             hhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhh
Q 012500          131 PTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  170 (462)
Q Consensus       131 ~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  170 (462)
                      ++|..+++.+.+++.+++||.+.|.+.++..++..+..+.
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998876655554433

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.77  E-value=0.00044  Score=68.39  Aligned_cols=158  Identities=12%  Similarity=-0.009  Sum_probs=98.9

Q ss_pred             HHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhh-ccccccchhHHHHHHHHHHHHHHHHHHhh---
Q 012500          262 GAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQM-GATISNAFKLLSAATFLGAISCLTAFCLS---  336 (462)
Q Consensus       262 ~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  336 (462)
                      +++...+..|+.+..+.+.... .+........-+..+++|++.|++ |++     +.+..+.++..+...++....   
T Consensus         4 YGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~-----~tIl~~~ii~~lG~~llai~a~~~   78 (654)
T TIGR00926         4 YGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKF-----KTILYLSIVYVVGHALLSFGAIPS   78 (654)
T ss_pred             eecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHhccCcc
Confidence            4455556667777777775443 222333333344567789999985 665     666666555555444443321   


Q ss_pred             -----hhHHHHHHHHHHHHHHHhccccceeeeeccCCcc---hhhHHHHHHHHHHhhhccccchhHHHHHHhhhc-----
Q 012500          337 -----SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS---LRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN-----  403 (462)
Q Consensus       337 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-----  403 (462)
                           .....+..+.+...+.+..-+...+...+.++++   .+-....+.....+. |+.+++.+.+++.+..+     
T Consensus        79 ~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNi-GSlis~~i~~~l~~~~~~fg~~  157 (654)
T TIGR00926        79 SGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINA-GSLISTIITPILRGDVGCFGCQ  157 (654)
T ss_pred             cccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccccC
Confidence                 1123455666677777778888888888877653   366777777767777 88889889999886542     


Q ss_pred             -chhHHHHHHHHHHHHHHHHHHH
Q 012500          404 -NWRKTTLALTSIFFLAAGIWFV  425 (462)
Q Consensus       404 -~~~~~~~~~~~~~~~~~~~~~~  425 (462)
                       +|...|.+.+++.+++.+++..
T Consensus       158 ~~~~~aF~i~~i~m~ia~lvf~~  180 (654)
T TIGR00926       158 DCYPLAFGVPAILMILALIVFMA  180 (654)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHH
Confidence             3556666666665555555443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.73  E-value=0.00077  Score=63.65  Aligned_cols=118  Identities=15%  Similarity=0.044  Sum_probs=79.4

Q ss_pred             HHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCc
Q 012500          290 IVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP  369 (462)
Q Consensus       290 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (462)
                      .+..++.++..|.++||+|||     ..+..................  ++..+... ...+.+.......+++++....
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk-----~~L~~~~~~~~l~~~~~~~~~--~~~~~~~~-l~g~~~~~~s~~~a~vadis~~  143 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRK-----VVLLLPLFGTILPALCLLFQG--YWFFLLLG-LSGGFSAIFSVGFAYVADISSE  143 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhh-----hhHHHHHHHHHHhHHHHHHHH--HHHhhhcc-cccchhhhhhhhhhheeeccch
Confidence            567788888999999999998     555555444444333333322  22222222 2233345566778889999988


Q ss_pred             chhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHHH
Q 012500          370 SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFF  417 (462)
Q Consensus       370 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  417 (462)
                      +.|....|+.+...+. +..++|.+.+.+.+..| +...+.+.....+
T Consensus       144 ~~R~~~~gll~~~~~~-~~~~~p~~~~~~~~~~~-~a~~f~ia~~~~~  189 (463)
T KOG2816|consen  144 EERSSSIGLLSGTFGA-GLVIGPALGGYLVKFLG-IALVFLIAAASGI  189 (463)
T ss_pred             hHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHhcC-chHHHHHHHHHHH
Confidence            9999999999776777 88889999999998855 4455555544433

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.65  E-value=0.00034  Score=65.38  Aligned_cols=134  Identities=11%  Similarity=0.055  Sum_probs=74.5

Q ss_pred             hhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHH-HH--h-h-hhHHHHHHHHHHHHHHHhccccc
Q 012500          285 FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA-FC--L-S-SLYGFLALFTVGELLVFATQAPV  359 (462)
Q Consensus       285 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~  359 (462)
                      ..+...++..++++..|++..|.+.-+    +.++.+.+++.+..++. ..  . + ..+.+++.-.+.|++.+. ....
T Consensus        76 viaa~slg~~i~~liF~~Ws~k~~~~k----~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~l  150 (488)
T KOG2325|consen   76 VIAASSLGHAIFSLIFGIWSNKTGSVK----KPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVL  150 (488)
T ss_pred             HHHHHHHHHHhcchhhcccccccCCcc----cCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHH
Confidence            335678888999999999999988521    44444444444443333 22  2 2 344455555555555442 2334


Q ss_pred             eeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhh------------hcchhHHHHHHHHHHHHHHHHHH
Q 012500          360 NYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH------------VNNWRKTTLALTSIFFLAAGIWF  424 (462)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~------------~g~~~~~~~~~~~~~~~~~~~~~  424 (462)
                      -.++++...+++|.++.+..+ ....+|.++||.+...+...            ++.|..+-+++++..+...+...
T Consensus       151 R~Y~a~~s~~~dR~rA~a~~~-~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~  226 (488)
T KOG2325|consen  151 RAYIADASTVEDRPRAFAATS-GGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIIL  226 (488)
T ss_pred             HHHHHhccCccchHHHHHHhh-hHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHH
Confidence            556666555677888877774 33334666666444333211            12355566666666555544443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.65  E-value=0.0014  Score=58.39  Aligned_cols=143  Identities=15%  Similarity=0.071  Sum_probs=84.9

Q ss_pred             HHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 012500          274 NIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLV  352 (462)
Q Consensus       274 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (462)
                      +.+|.+..+. .+.......+.+...+.|.+.||+|||     +..+..+++-...++.- ..++.+..++.=++.|+..
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk-----~~cl~~cily~~scl~k-~~~~~~~L~~GRvlgGiaT  135 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRK-----KACLLFCILYSLSCLTK-HSSNYPVLLLGRVLGGIAT  135 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-----HHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHH
Confidence            4578886655 333555666677777889999999999     77777777777766543 3456666666667777776


Q ss_pred             Hhccccceeeeec-----cCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcc-hhHHHHHHHHHHHHHHHH
Q 012500          353 FATQAPVNYVCLH-----SVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN-WRKTTLALTSIFFLAAGI  422 (462)
Q Consensus       353 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~-~~~~~~~~~~~~~~~~~~  422 (462)
                      ...+...-+++..     .+|++..+...+......+.+-.+.+..+..++.|..+. ...+|.....+.+++.++
T Consensus       136 SLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~  211 (354)
T PF05631_consen  136 SLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVL  211 (354)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence            6555544333332     344454555555442122332344445455566665552 345666666655544443

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.57  E-value=0.00013  Score=49.84  Aligned_cols=67  Identities=10%  Similarity=-0.026  Sum_probs=52.3

Q ss_pred             hHHHHHHHHHHHhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHH
Q 012500            4 CIHVLLCLIGLILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVW   72 (462)
Q Consensus         4 ~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~   72 (462)
                      ......+..+.+.|-......+.+.++.+.|.  +.+...+..+++.|++|.+ ||+++++.++....++
T Consensus         8 ~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGi--l~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    8 FYFFYFAALGCLYPFLPLYLKQLGLSPSQIGI--LSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            34455566666677555444458999999777  9999999999999999999 9999999887766543

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.37  E-value=0.0038  Score=52.93  Aligned_cols=55  Identities=11%  Similarity=0.051  Sum_probs=37.7

Q ss_pred             CCchhHHHHHHhhhhhhhhhhhhHHHHh---hc--ccchHHHHHHHHHHHHHHHHHHhhc
Q 012500          117 PQKTAWLSMFYMCIPTGVALGYVYGGVV---GS--HLNWRYAFWGEAILMLPFAVLAFVI  171 (462)
Q Consensus       117 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l---~~--~~gwr~~f~~~~~~~~~~~~~~~~~  171 (462)
                      |+|+....+...+.++|.++....--.-   .+  .-.|++++.+.+++.++.+++..++
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6788888888888888887764332111   11  2259999999998877766665555

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.33  E-value=0.0018  Score=59.20  Aligned_cols=150  Identities=16%  Similarity=0.089  Sum_probs=80.7

Q ss_pred             hHHHHHHHHHHHHHHHH-HHHHHHhh--HHHHHHhCCCcchhhhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHH
Q 012500          245 KVYVVNVLGYIAYNFVI-GAYSYWGP--KAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA  321 (462)
Q Consensus       245 ~~~~~~~~~~~~~~~~~-~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  321 (462)
                      ++.|..++...+.++.. .....|.|  .+..+.|+.+.....+..++.+.+++..+.+.|+.||+|-|     .....+
T Consensus        41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Ygs~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR-----~a~llg  115 (480)
T KOG2563|consen   41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYGSSSAADWLSMIYMVVSVPFGFAAMWILDKFGLR-----TALLLG  115 (480)
T ss_pred             hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhHHHHhhcccchH-----HHHHHH
Confidence            33455555444444443 11222333  25666677333344666888899999999999999999998     666555


Q ss_pred             HHHHHHHHHHHHHhh------hhH--HHHHHHHHHHHHHHhccccceeeee-ccCCcchhhHHHHHHHHHHhhhccccch
Q 012500          322 TFLGAISCLTAFCLS------SLY--GFLALFTVGELLVFATQAPVNYVCL-HSVKPSLRALSMAISTVSIHIFGDVPSS  392 (462)
Q Consensus       322 ~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~  392 (462)
                      ...-.+...+=....      ..+  .....-.+.+...-.. ...++-++ .-+++++|+++..+.. +.+-+|.+++.
T Consensus       116 t~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fi-m~lPskiA~~WF~~~qra~A~~~~v-~~n~LGvavg~  193 (480)
T KOG2563|consen  116 TVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFI-LGLPSKIAAVWFPPDQRAIATVLGV-MGNPLGVAVGF  193 (480)
T ss_pred             HHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHh-hccccHHHHhhCCcchhhhhhhHHH-hcchHHHHHHh
Confidence            555554444332221      222  2222222222222111 11222233 3478899999999984 44444666665


Q ss_pred             hHHHHHHhh
Q 012500          393 PLVGVLQDH  401 (462)
Q Consensus       393 ~~~g~l~~~  401 (462)
                      .+-+.+..+
T Consensus       194 llppilV~~  202 (480)
T KOG2563|consen  194 LLPPILVPS  202 (480)
T ss_pred             hccceecCC
Confidence            544444443

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.28  E-value=0.0022  Score=43.78  Aligned_cols=58  Identities=16%  Similarity=0.234  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccc
Q 012500          252 LGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGAT  310 (462)
Q Consensus       252 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~  310 (462)
                      ..+++.......+.-+.|.|+++ .|.++.+. .+.++..+..+++.++.|.++||.+++
T Consensus         7 ~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~   65 (77)
T PF12832_consen    7 AFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKR   65 (77)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence            34566677777888899999987 67887666 455778888999999999999999998

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.24  E-value=0.0093  Score=54.88  Aligned_cols=152  Identities=11%  Similarity=-0.059  Sum_probs=90.9

Q ss_pred             HHhhHHHHHH-hCCCcchhh--hhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 012500          266 YWGPKAGYNI-YHMSNADMM--FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFL  342 (462)
Q Consensus       266 ~~~p~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (462)
                      .|+..|+.+. .|++..+..  +.-+..=..++..+....+.|.++-|     +.++...+.......++.+.++...+.
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Yk-----pviil~~~~~i~t~~lll~~~sv~~mq   98 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYK-----PVIILQALSYIITWLLLLFGTSVLAMQ   98 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHHHCcHHHHH
Confidence            4555677776 777754441  11111122344556677899999988     788777777777777777778888777


Q ss_pred             HHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhh-cchhHHHHHHHHHHHHHHH
Q 012500          343 ALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV-NNWRKTTLALTSIFFLAAG  421 (462)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~  421 (462)
                      +.-++.|.....- ...++++-..+++++--++.+...... ..|.+++..++-.+.... .++....++......++.+
T Consensus        99 ~~q~~yg~~~a~e-vay~sYiys~v~~~~yq~vts~~raa~-l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~  176 (412)
T PF01770_consen   99 LMQFFYGLATAAE-VAYYSYIYSVVDKEHYQKVTSYTRAAT-LVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALL  176 (412)
T ss_pred             HHHHHHHHHHHHH-HHHHHHheeecCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            7777777766643 334556666677876667777765333 336666775555555422 2344444444443334444


Q ss_pred             HHH
Q 012500          422 IWF  424 (462)
Q Consensus       422 ~~~  424 (462)
                      ..+
T Consensus       177 ~~~  179 (412)
T PF01770_consen  177 IAL  179 (412)
T ss_pred             HHH
Confidence            333

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.22  E-value=0.059  Score=50.52  Aligned_cols=173  Identities=14%  Similarity=0.048  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHH--HHHHH
Q 012500          247 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLL--SAATF  323 (462)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~--~~~~~  323 (462)
                      .+.+....++..+..-...+-.|.++.+.+..+-... .+...-.+..++.....|.+.||..|.+..+..+.  -.+..
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~   83 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVA   83 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHH
Confidence            4555666777777777777778888888765442222 33444556667777788999999987632111111  12222


Q ss_pred             HHHHHHHHHHHhhh-----hHHHHHHH---HHHHHHHHhcccccee-----eeeccC--CcchhhHHHHHHHHHHhhhcc
Q 012500          324 LGAISCLTAFCLSS-----LYGFLALF---TVGELLVFATQAPVNY-----VCLHSV--KPSLRALSMAISTVSIHIFGD  388 (462)
Q Consensus       324 ~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~g~  388 (462)
                      +.+.........+.     .+....++   .+.+............     .+....  +++.....++... -...+..
T Consensus        84 ~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mR-RIDL~ck  162 (432)
T PF06963_consen   84 ASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMR-RIDLFCK  162 (432)
T ss_pred             HHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHH-HHHHHHH
Confidence            22222222222111     12222111   1222211111111111     111111  2344455555542 4455688


Q ss_pred             ccchhHHHHHHhhhcchhHHHHHHHHHHHHHHH
Q 012500          389 VPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAG  421 (462)
Q Consensus       389 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  421 (462)
                      .++|.+.|.+.+..+ ......+.+...++...
T Consensus       163 llaPl~vG~l~t~~s-~~~~~~~i~~~N~~S~~  194 (432)
T PF06963_consen  163 LLAPLFVGLLMTFAS-PVIAAIFIAGWNLASVF  194 (432)
T ss_pred             HHHHHHHHHHhhccC-HHHHHHHHHHHHHHHHH
Confidence            899999999998765 44555555544444443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.21  E-value=0.0027  Score=60.13  Aligned_cols=147  Identities=14%  Similarity=0.030  Sum_probs=86.1

Q ss_pred             HHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhh----hhHHHHHH
Q 012500          270 KAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS----SLYGFLAL  344 (462)
Q Consensus       270 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  344 (462)
                      .++++.++.++.+. .+..+..+. -...++.|.++|-+.-...+++..++++..+...........+    +.....++
T Consensus        14 ~~l~~~l~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~   92 (433)
T PF03092_consen   14 PFLKDDLGLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVL   92 (433)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHH
Confidence            47788889997655 333333332 3356788999999863333333666666666644333333222    33344445


Q ss_pred             HHHHHHHHHhccccceeeeeccCCc--chhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHHHHH
Q 012500          345 FTVGELLVFATQAPVNYVCLHSVKP--SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLA  419 (462)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  419 (462)
                      +++..++....-...-+.+.|....  +.++.-.+....... +|++++..+.|.+.+..+ ++..+.+...+..+.
T Consensus        93 l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~-~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~~~l~  167 (433)
T PF03092_consen   93 LFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRS-VGSLVGSLLSGPLLDSFG-PQGVFLISAALPLLM  167 (433)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHH-HHHHHHHHhhhhhhhcCC-CeEEehHHHHHHHHH
Confidence            5555555555555555555555432  337777777754444 488999999999998865 555565555443333

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.92  E-value=0.00013  Score=70.48  Aligned_cols=124  Identities=10%  Similarity=0.005  Sum_probs=1.5

Q ss_pred             HHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhh------------
Q 012500          270 KAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS------------  336 (462)
Q Consensus       270 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  336 (462)
                      .-++..++++..+. .+.+...++.++..++..++.+|..|.     +++..+.++.++..++....+            
T Consensus        27 ttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrp-----rwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~  101 (539)
T PF03137_consen   27 TTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRP-----RWIGIGALLMGLGSLLFALPHFLSGPYSYEEAS  101 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc-----ceeeecHHHHHHHHHHHhccHhhcCCCcccccc
Confidence            35677888887666 455777888888888888888776555     666666655555444332210            


Q ss_pred             ----------------------------------h----hHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHH
Q 012500          337 ----------------------------------S----LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAI  378 (462)
Q Consensus       337 ----------------------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (462)
                                                        .    .+.+++..++.|++....++...+++-|.++++..+...|+
T Consensus       102 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi  181 (539)
T PF03137_consen  102 NSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGI  181 (539)
T ss_dssp             --------------------------------------------------SSS---------------------------
T ss_pred             ccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhh
Confidence                                              0    11223333444455555566667777777877777777777


Q ss_pred             HHHHHhhhccccchhHHHHHH
Q 012500          379 STVSIHIFGDVPSSPLVGVLQ  399 (462)
Q Consensus       379 ~~~~~~~~g~~~~~~~~g~l~  399 (462)
                      .. ....+|-++|-.+++...
T Consensus       182 ~~-~~~~lGPa~Gf~lg~~~L  201 (539)
T PF03137_consen  182 LY-AMSILGPALGFLLGSFCL  201 (539)
T ss_dssp             ---------------------
T ss_pred             hh-HHhhccHHHHHHHHHHHH
Confidence            74 444446655555555443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.81  E-value=0.037  Score=43.70  Aligned_cols=101  Identities=7%  Similarity=-0.059  Sum_probs=73.4

Q ss_pred             hhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeecc
Q 012500          287 GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHS  366 (462)
Q Consensus       287 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (462)
                      ++......+..++.+.+.+++|.|     +.++++.+.-...... ...++.+..+....+.|++.+..+.....++.+.
T Consensus        44 ai~Y~~~~~s~l~~P~iv~~lg~K-----~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~  117 (156)
T PF05978_consen   44 AILYGSFAISCLFAPSIVNKLGPK-----WSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSY  117 (156)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhhH-----HHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence            455666677788889999999998     7776666655543333 3455677778888889999998888888888887


Q ss_pred             CCcchhhHHHHHHHHHHhhhccccchhH
Q 012500          367 VKPSLRALSMAISTVSIHIFGDVPSSPL  394 (462)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~  394 (462)
                      ..++.+++-.++.....+. +.++|..+
T Consensus       118 s~~~~~~~~~~ifw~i~~~-s~i~G~~~  144 (156)
T PF05978_consen  118 STEETIGRNTGIFWAIFQS-SLIFGNLF  144 (156)
T ss_pred             CCHHHHhhHHHHHHHHHHH-HHHHHHHH
Confidence            7778888888887555444 55555533

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=96.46  E-value=0.00052  Score=61.80  Aligned_cols=101  Identities=15%  Similarity=0.012  Sum_probs=2.7

Q ss_pred             hhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHH--HHHHHHHHHH----------HHhhhhHHHHHHHHHHHHHHHh
Q 012500          287 GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT--FLGAISCLTA----------FCLSSLYGFLALFTVGELLVFA  354 (462)
Q Consensus       287 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~  354 (462)
                      ..+.++..+|+.+.++..-+..++  +  .+.....  ++.....++.          ...++.+..++...++++..|-
T Consensus       189 l~Fn~gD~iGR~l~~~~~~~~~~~--~--~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy  264 (309)
T PF01733_consen  189 LLFNLGDFIGRFLASWPRWPGPSP--R--WLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY  264 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhcchhcceeEeccccc--c--cHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence            567888899999887642111111  0  2222111  1111111111          1223455666677777777776


Q ss_pred             ccccceeeeeccCCcchhhHHHHHHHHHHhhhccccch
Q 012500          355 TQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  392 (462)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  392 (462)
                      ..........+.+++++|..+..+....... |-.+|.
T Consensus       265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~-Gl~~Gs  301 (309)
T PF01733_consen  265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSF-GLFIGS  301 (309)
T ss_dssp             --HHHH--------------------------------
T ss_pred             hhhceeeeCCCcCCHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            6666677777888888787776666444443 666665

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=96.14  E-value=0.046  Score=50.42  Aligned_cols=146  Identities=10%  Similarity=-0.005  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHH
Q 012500          249 VNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI  327 (462)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  327 (462)
                      ......+...+....=..++|.|+++. |.+..-. ......-+.+++..++.|..+||...|..++|+.+.......++
T Consensus        36 ~v~~ia~Gvqf~wA~elsy~tPyl~~l-Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~  114 (498)
T KOG0637|consen   36 SVASIAAGVQFGWALELSYLTPYLQSL-GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAV  114 (498)
T ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHc-CCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHH
Confidence            333334455555656667888888874 4543222 22233445566778889999998766665556777666665555


Q ss_pred             HHHHHHHhhh-----------------hHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhH-HHHHHHHHHhhhccc
Q 012500          328 SCLTAFCLSS-----------------LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRAL-SMAISTVSIHIFGDV  389 (462)
Q Consensus       328 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~  389 (462)
                      .+.+..+..+                 ....++.+.+.=+.......+.-++..+...++++.+ +++....+... |+.
T Consensus       115 ~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~av-Gnv  193 (498)
T KOG0637|consen  115 SLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAV-GNV  193 (498)
T ss_pred             HHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHh-cce
Confidence            5554443221                 1112233333444555778888888888887766666 88888555555 887


Q ss_pred             cchhHHH
Q 012500          390 PSSPLVG  396 (462)
Q Consensus       390 ~~~~~~g  396 (462)
                      +|-.+.+
T Consensus       194 LGY~~g~  200 (498)
T KOG0637|consen  194 LGYALGS  200 (498)
T ss_pred             eeeeccc
Confidence            7765444

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.00  E-value=0.28  Score=46.73  Aligned_cols=41  Identities=5%  Similarity=-0.139  Sum_probs=30.9

Q ss_pred             cceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHH
Q 012500          358 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ  399 (462)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~  399 (462)
                      ....+++|...+++..+-.++.....+. |..+++.+..++.
T Consensus       149 lFW~fandi~t~~qakRfy~l~~~ganl-g~i~sg~~~~~~~  189 (472)
T TIGR00769       149 LFWGFANQITTIDEAKRFYALFGLGANV-ALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            3455666777778888999999666665 8888888887776

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=95.92  E-value=0.2  Score=44.71  Aligned_cols=113  Identities=17%  Similarity=0.112  Sum_probs=69.6

Q ss_pred             hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhcccccee
Q 012500          284 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS--SLYGFLALFTVGELLVFATQAPVNY  361 (462)
Q Consensus       284 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  361 (462)
                      .......+...++.+..|.+.||.|||     +....................  ..+.........+++.+...+....
T Consensus        43 ~~~~~~~~~~~~~~~~~g~l~d~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  117 (338)
T COG0477          43 LLLSAFFLGYAIGSLLAGPLGDRYGRR-----KVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASA  117 (338)
T ss_pred             HHHHHHHHHHHHHhhhhhhccccccch-----HHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            444556667777778999999999887     444444432222222222222  2444444444456666666667777


Q ss_pred             eeeccCCc-chhhHHHHHHHHHHhhhccccchhHHHHHHhh
Q 012500          362 VCLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  401 (462)
Q Consensus       362 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~  401 (462)
                      ...+..|+ +.|+...+.........+..++|.+.+.+.+.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477         118 LLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777776 57888888875534444777788777766665

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=95.90  E-value=0.27  Score=45.15  Aligned_cols=104  Identities=15%  Similarity=0.044  Sum_probs=56.9

Q ss_pred             HHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHH------HHhhhhHHHHHHHHHHHHHHHhccccceee
Q 012500          289 TIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA------FCLSSLYGFLALFTVGELLVFATQAPVNYV  362 (462)
Q Consensus       289 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (462)
                      ..+...+|.....++.++-+|..    ......=.+......+.      ....+.+..+....++++..|-.......+
T Consensus       292 fN~~d~vG~~~a~~~~~~~~r~l----~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl~m~~  367 (406)
T KOG1479|consen  292 FNVFDLIGSILAALLTWPDPRKL----TIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSLIMMY  367 (406)
T ss_pred             hHHHHHhhhhhhhcccCCCCcee----hHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhheehh
Confidence            66777777666655544433320    11111112222222211      123456667777888888888666677778


Q ss_pred             eeccCCcchhhHHHHHHHHHHhhhccccchhHHHHH
Q 012500          363 CLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  398 (462)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l  398 (462)
                      ..+.++++++..+-.+....... |-+.|. +.+++
T Consensus       368 aPk~v~~~e~e~aG~~m~~fl~~-Gl~~G~-~~s~l  401 (406)
T KOG1479|consen  368 APKQVKPSEKEAAGNLMVFFLVG-GLALGS-LLSWV  401 (406)
T ss_pred             cCCCCChHHHHHHHHHHHHHHHH-HHHHhh-HHHHH
Confidence            88888887776666665333333 555555 44444

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.74  E-value=0.063  Score=53.13  Aligned_cols=64  Identities=8%  Similarity=0.026  Sum_probs=39.3

Q ss_pred             HHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHH
Q 012500          263 AYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT  331 (462)
Q Consensus       263 ~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (462)
                      ++....-.-.++.++++.... .+....-++..+......+...|..|.     +++..+.++.++..++
T Consensus       114 ~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrP-----r~Ig~G~~~m~lgsll  178 (735)
T KOG3626|consen  114 GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRP-----RWIGIGLVLMGLGSLL  178 (735)
T ss_pred             hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCcc-----ceeeechhHHHHHHHH
Confidence            444334445677788886554 444667777777777777777777665     5555555544444333

>PRK03612 spermidine synthase; Provisional

Probab=95.58  E-value=0.51  Score=45.94  Aligned_cols=61  Identities=10%  Similarity=-0.021  Sum_probs=33.2

Q ss_pred             HHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHh-hhcchhH
Q 012500          345 FTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD-HVNNWRK  407 (462)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~  407 (462)
                      .++.++..|...|...-...+.. .+..+...|-. ...+.+|+++|+.+.+++.- ..|....
T Consensus       117 ~~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~l-y~~ntlGa~~G~l~~~~vLlp~lG~~~t  178 (521)
T PRK03612        117 VLLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATV-LAADYLGALVGGLAFPFLLLPRLGLIRT  178 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhh-HhHHhHHHHHHHHHHHHHHHHhcchHHH
Confidence            34455666666555444433322 22234455555 35555688888888877654 5564333

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=95.56  E-value=0.029  Score=51.66  Aligned_cols=109  Identities=9%  Similarity=0.021  Sum_probs=79.6

Q ss_pred             hhhHHHHHHHHHhhhhhhccccccCCchhHHHHHHHH---HHHHHhhhccchhHHHHHHHHHhhcccccccccccchhcc
Q 012500           36 SVNVLEFTVTQLVCSSHHCSQCSHNPFRLIGVGLSVW---TFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDD  112 (462)
Q Consensus        36 s~~~~~~~~~~~~~~~~~g~ldr~Grr~~l~~~~~~~---~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~  112 (462)
                      -+....|.+|..++.--...+ |+.+-+++.+--.+.   .+...+.-+.+|.|..++.-+..|+..|..+......+.|
T Consensus       284 ~~Y~~~YQ~GVFISRSS~~~~-rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~  362 (402)
T PF02487_consen  284 RWYQLLYQLGVFISRSSLPFF-RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISE  362 (402)
T ss_pred             HHHHHHHHHHHhhhhcceeee-ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence            348888888877775544333 232222222222222   2222333356889999999999999999999999999999


Q ss_pred             cCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhh
Q 012500          113 NAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG  145 (462)
Q Consensus       113 ~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~  145 (462)
                      -.|+++|..+++....+-+.|..++..++-.+-
T Consensus       363 ~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  363 EVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             cCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999998876654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK03612 spermidine synthase; Provisional

Probab=95.11  E-value=0.23  Score=48.27  Aligned_cols=136  Identities=11%  Similarity=-0.129  Sum_probs=76.5

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHH--HH-HHHHhh----hccchh-HHHHHHHHHhh
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSV--WT-FATAGC----GSSFDF-WSIAICRMLVG   96 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~--~~-~~~~~~----~~~~~~-~~l~~~r~l~G   96 (462)
                      ++.+..+  ++.+.+.+..|..+++.+++++ ++.-++.. ..-+.+  .+ ++..+.    ++.... ..++..-++.|
T Consensus        45 ~G~s~~~--~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~  121 (521)
T PRK03612         45 LGDSVTQ--FSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIG  121 (521)
T ss_pred             hCchHHH--HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444  5669999999999999998887 43222221 111111  11 111111    111111 12233445667


Q ss_pred             cccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhh-cccchHHHHHHHHHHHHHHH
Q 012500           97 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-SHLNWRYAFWGEAILMLPFA  165 (462)
Q Consensus        97 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~~gwr~~f~~~~~~~~~~~  165 (462)
                      +..|...|....+..+... ++-++..|-......+|.++|.++.+++. ..+|-....++.+.+.++++
T Consensus       122 ~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a  190 (521)
T PRK03612        122 LLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA  190 (521)
T ss_pred             HHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            7777777776666654332 34567788888888999999998877654 45664444444444444433

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=94.54  E-value=0.11  Score=46.74  Aligned_cols=126  Identities=11%  Similarity=-0.045  Sum_probs=69.9

Q ss_pred             hHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHh------hhccc------hhHHHHHHHH----Hhhcccc
Q 012500           38 NVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAG------CGSSF------DFWSIAICRM----LVGVGEA  100 (462)
Q Consensus        38 ~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~------~~~~~------~~~~l~~~r~----l~G~~~g  100 (462)
                      ....-....++.+++.|.. |+..|+|++...+.+.-++..+      ..+.+      ++..+..+-+    +..++.=
T Consensus        68 yglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~L  147 (503)
T KOG2601|consen   68 YGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVL  147 (503)
T ss_pred             HHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHH
Confidence            4444455567888888999 9999999887766554333322      22322      3443333222    2223222


Q ss_pred             cccccccchhcccC----CCCCchhHH---HHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHH
Q 012500          101 SFISLAAPFIDDNA----PVPQKTAWL---SMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLP  163 (462)
Q Consensus       101 ~~~~~~~~~i~~~~----~~~~r~~~~---~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~  163 (462)
                      ........+-.||.    ..+.+....   +..-..-..-.++.|.+.|.+.+..+-|..-.+.++.+++
T Consensus       148 as~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  148 ASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALV  217 (503)
T ss_pred             HHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHH
Confidence            22222223334554    234444443   4444444556788899999988887777755555555444

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=94.49  E-value=0.36  Score=33.41  Aligned_cols=75  Identities=16%  Similarity=0.072  Sum_probs=52.1

Q ss_pred             HHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhh
Q 012500          260 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSL  338 (462)
Q Consensus       260 ~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (462)
                      .-+.+...+|...+ ..+++..+. .+.+...++..+|.+...++.++..++     +.+..+.+............++.
T Consensus         7 gRFayTplLP~M~~-~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~ma~~~~~   80 (85)
T PF06779_consen    7 GRFAYTPLLPLMQA-DGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR-----RLLRAGLLLTVLSTAAMALTHSF   80 (85)
T ss_pred             HHHHHHhHhHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH-----HHHHHHHHHHHHHHHHHHHHhch
Confidence            34455566775544 577886665 566888999999999999988886655     66667776666666666655554


Q ss_pred             HH
Q 012500          339 YG  340 (462)
Q Consensus       339 ~~  340 (462)
                      +.
T Consensus        81 ~~   82 (85)
T PF06779_consen   81 WL   82 (85)
T ss_pred             HH
Confidence            43

Note that many members are hypothetical proteins.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=94.01  E-value=0.11  Score=48.32  Aligned_cols=86  Identities=15%  Similarity=0.055  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHHHhccccceeeeeccCCcc---hhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHH
Q 012500          339 YGFLALFTVGELLVFATQAPVNYVCLHSVKPS---LRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  415 (462)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  415 (462)
                      ...++.+.+..++.|+.-+....+..+.++++   .|.+.....+...+. |..+++...+++.++.| |...|.+..+.
T Consensus        34 ~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~-G~~~~~~~~~~i~~~~~-~~~~f~i~~~~  111 (372)
T PF00854_consen   34 GLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINI-GSLFSPTLVPYIQQNYG-WFLGFGIPAIG  111 (372)
T ss_dssp             CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHH-HHHHHHHCCCHHHHCS--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhh-hhHhhcccchhhccccc-hhhhhhHHHHH
Confidence            45677777888899988888888888888775   466667777777787 99999989999998876 87888888877


Q ss_pred             HHHHHHHHHHH
Q 012500          416 FFLAAGIWFVG  426 (462)
Q Consensus       416 ~~~~~~~~~~~  426 (462)
                      .+++.+.++..
T Consensus       112 ~~~~~~~f~~~  122 (372)
T PF00854_consen  112 MLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHHhC
Confidence            77776666543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=93.69  E-value=1.4  Score=40.63  Aligned_cols=34  Identities=9%  Similarity=-0.055  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHhccccceeeeeccCCcchhh
Q 012500          339 YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRA  373 (462)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (462)
                      ...++.+.+.+.+.+..++..+.. ...+|+++..
T Consensus       118 ~vt~~~vv~~~~a~a~~qgs~~G~-a~~~P~~ytq  151 (406)
T KOG1479|consen  118 LVTLIIVVLLNLANAVVQGSLYGL-AGLFPSEYTQ  151 (406)
T ss_pred             HHHHHHHHHHhhhhhhhccchhhh-hhcCCHHHHH
Confidence            344455555666666666655554 3456776543

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=92.72  E-value=4  Score=39.30  Aligned_cols=40  Identities=10%  Similarity=-0.046  Sum_probs=28.3

Q ss_pred             eeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHh
Q 012500          360 NYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  400 (462)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~  400 (462)
                      ..++.+....++..+-.++.....+. |.+++..+..++.+
T Consensus       166 W~fAN~itt~~eAKRfYpl~g~gani-gli~sG~~~~~~~~  205 (491)
T PF03219_consen  166 WGFANEITTVEEAKRFYPLFGLGANI-GLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            34455556668888999999766666 77777777766666

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=91.44  E-value=0.99  Score=42.67  Aligned_cols=36  Identities=19%  Similarity=0.120  Sum_probs=20.1

Q ss_pred             ceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHH
Q 012500          359 VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV  395 (462)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  395 (462)
                      +-........++.++-|........+. |.+++-.++
T Consensus       139 VDGWALT~Ls~~n~~~ASTcqtvG~~~-Gyfls~tvF  174 (544)
T PF13000_consen  139 VDGWALTMLSPENVGYASTCQTVGQTA-GYFLSFTVF  174 (544)
T ss_pred             eehhhhhhcChhhcchHHHHHHhHhhh-hHHHHHHHH
Confidence            344455566677777766665434444 666554444

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=89.81  E-value=14  Score=33.31  Aligned_cols=91  Identities=7%  Similarity=0.099  Sum_probs=60.2

Q ss_pred             hhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccccccchhcccCCC--CCc-------
Q 012500           50 SSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPV--PQK-------  119 (462)
Q Consensus        50 ~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r-------  119 (462)
                      +.+.+.+ .++|-|+++.++...+...-. .=+=+.+..++-.-...|++.+..+..--+|+++.-..  ++|       
T Consensus        75 ~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~~q~~~~  153 (390)
T KOG3097|consen   75 SMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRGEQAGDG  153 (390)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhhhhhccCc
Confidence            3333455 777999999998877765432 22346788899999999999999999888888776542  334       


Q ss_pred             --hhHHHHHHhhhhhhhhhhhhHH
Q 012500          120 --TAWLSMFYMCIPTGVALGYVYG  141 (462)
Q Consensus       120 --~~~~~~~~~~~~~G~~~g~~~~  141 (462)
                        .+..+.+.+.+.-+...|..++
T Consensus       154 ~~~~ffg~Ffii~~~~qv~gn~is  177 (390)
T KOG3097|consen  154 MKVRFFGEFFIIFQCAQVWGNLIS  177 (390)
T ss_pred             eeeeehhHHHHHHHHHHHHHHHHH
Confidence              3444555444444444444333

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=89.54  E-value=2.3  Score=36.73  Aligned_cols=138  Identities=13%  Similarity=-0.030  Sum_probs=81.8

Q ss_pred             cccccchhhHHHHHHHHHhhhhhhccc-cccCCch--hHHHHHHHHHHHHHhhhc----cc---hhHHHHHHHHHhhccc
Q 012500           30 KLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFR--LIGVGLSVWTFATAGCGS----SF---DFWSIAICRMLVGVGE   99 (462)
Q Consensus        30 ~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~--~l~~~~~~~~~~~~~~~~----~~---~~~~l~~~r~l~G~~~   99 (462)
                      +.+.-.+.+.+.++++..+++-+..++ .|-..|-  .+.+..++.++...+...    ++   +...=+++-.+.-.+.
T Consensus       279 ~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cv  358 (454)
T KOG4332|consen  279 DEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACV  358 (454)
T ss_pred             cccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHH
Confidence            334444669999999999999999888 6654443  444444444443333222    22   2222244555556677


Q ss_pred             ccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHH
Q 012500          100 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVL  167 (462)
Q Consensus       100 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~  167 (462)
                      |..+|....+-+.+.|++.|...+.++..-.++=..++-..-..-....+=|..|-+..+...+..+.
T Consensus       359 GlfwPSimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  359 GLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASIL  426 (454)
T ss_pred             hhcchHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHH
Confidence            88999999999999999999998888766544322211110000001134567777776655544443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.25  E-value=9.1  Score=36.43  Aligned_cols=99  Identities=9%  Similarity=-0.102  Sum_probs=73.9

Q ss_pred             hhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeecc
Q 012500          287 GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHS  366 (462)
Q Consensus       287 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (462)
                      ++......+..++++.+.|+++.|     +.++.+...-...-.. +...|.+..+..-.+.|++.+..+...-.+.++.
T Consensus        57 aiiY~~ftv~~l~~psiv~~i~~K-----~~lv~ga~~y~~f~~g-fl~~N~y~~yfssallG~Gaallw~GqG~ylt~~  130 (461)
T KOG3098|consen   57 AIIYAFFTVSCLFAPSIVNFLGPK-----WALVIGATCYAAFPLG-FLFPNSYYLYFSSALLGFGAALLWTGQGGYLTSN  130 (461)
T ss_pred             HHHHHHHHHHHHhhHHHHHHhhHH-----HHHHHHhHHHHHHHHH-HHhcchHHHHHHHHHhhhhHHheecccceehhhc
Confidence            566677788899999999999997     6666655555444333 3445677888888999999999899888899998


Q ss_pred             CCcchhhHHHHHHHHHHhhhccccch
Q 012500          367 VKPSLRALSMAISTVSIHIFGDVPSS  392 (462)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~g~~~~~  392 (462)
                      ..++.+.+..++....... +.++|.
T Consensus       131 st~~tie~Nisi~Wai~~~-~li~Gg  155 (461)
T KOG3098|consen  131 STRETIERNISIFWAIGQS-SLIIGG  155 (461)
T ss_pred             CChhhHHHHHHHHHHHHHH-HHHhhh
Confidence            8888888877777655444 555553

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=88.93  E-value=4.2  Score=37.27  Aligned_cols=63  Identities=13%  Similarity=0.036  Sum_probs=32.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHh-----hhcccc
Q 012500          245 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILD-----QMGATI  311 (462)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d-----~~~~~~  311 (462)
                      +++..+...+...+....... -+|.+++. .+.|-.+. .+.....--  .--++...++|     |+|||+
T Consensus        31 ~~illLl~LYllQGiP~GL~~-~iP~lL~a-k~vSyt~~a~fS~ay~P~--sLKllWaPiVDs~y~k~~Grrk   99 (510)
T KOG3574|consen   31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQA-KGVSYTSQAIFSFAYWPF--SLKLLWAPIVDSVYSKRFGRRK   99 (510)
T ss_pred             hhHHHHHHHHHHcCCchhHhh-hhHHHhcC-CCcchhhhhhhhhhhhHH--HHHHHHHhhhHHHHHHhhcccc
Confidence            344445554556555554444 78888774 45553332 222111111  12345556666     899884

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=88.39  E-value=3.2  Score=39.46  Aligned_cols=108  Identities=14%  Similarity=0.044  Sum_probs=76.0

Q ss_pred             hhHHHHHHHHHhhhhhhccccccCCc--hhHHHH--HHHHHHHHHhhh---------ccchhHHHHHHHHHhhccccccc
Q 012500           37 VNVLEFTVTQLVCSSHHCSQCSHNPF--RLIGVG--LSVWTFATAGCG---------SSFDFWSIAICRMLVGVGEASFI  103 (462)
Q Consensus        37 ~~~~~~~~~~~~~~~~~g~ldr~Grr--~~l~~~--~~~~~~~~~~~~---------~~~~~~~l~~~r~l~G~~~g~~~  103 (462)
                      +....|.+|-.++..+..+...-++|  ++.+..  =+++.-..++|.         +-++-+..++..++.|+..|-..
T Consensus       311 i~~~~fNvgD~vGR~~~~~~~~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~~  390 (437)
T TIGR00939       311 ICFLLFNLFDWLGRSLTSKFMWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYLG  390 (437)
T ss_pred             HHHHHHHHHHHHHhhhhheeEeeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHHH
Confidence            46778888888888766554111222  333322  222333333333         22466677778999999999999


Q ss_pred             ccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHh
Q 012500          104 SLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV  144 (462)
Q Consensus       104 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l  144 (462)
                      +.++.+..+..+++||..+..+...+..+|..+|..++-.+
T Consensus       391 s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       391 SLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888775443

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=84.89  E-value=17  Score=36.08  Aligned_cols=165  Identities=12%  Similarity=-0.003  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHH
Q 012500          255 IAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF  333 (462)
Q Consensus       255 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (462)
                      .+-...++++...+-.|+...++.+...+ -.............+.+++++|-+--|.    +.+.++.++......++.
T Consensus        47 ~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry----~tI~~~s~i~~~G~~~lt  122 (571)
T KOG1237|consen   47 VLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRY----FTINIGSLISLLGLFGLT  122 (571)
T ss_pred             HHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHH
Confidence            33344455555556667777777775333 2223344444556688899999875442    445444444333322222


Q ss_pred             Hhh----------------------h---hHHHHHHHHHHHHHHHhccccceeeeeccCC---c-chhh--HHHHHHHHH
Q 012500          334 CLS----------------------S---LYGFLALFTVGELLVFATQAPVNYVCLHSVK---P-SLRA--LSMAISTVS  382 (462)
Q Consensus       334 ~~~----------------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~--~~~~~~~~~  382 (462)
                      ...                      +   .......+.+...+.++.-+...++-.+.++   + +.+.  .-.......
T Consensus       123 ~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~  202 (571)
T KOG1237|consen  123 LSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFS  202 (571)
T ss_pred             HHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHH
Confidence            110                      0   0122333333444555666777777777777   3 2222  334444344


Q ss_pred             HhhhccccchhHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHH
Q 012500          383 IHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV  425 (462)
Q Consensus       383 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  425 (462)
                      .+. |..++..+.-++.|..+ |...+-....+..++.++++.
T Consensus       203 ~~~-g~l~a~t~~vyiq~~~~-w~lgf~i~~~~~~lai~iF~~  243 (571)
T KOG1237|consen  203 QNG-GALLAQTVLVYIQDNVG-WKLGFGIPTVLNALAILIFLP  243 (571)
T ss_pred             HHH-HHHHHHHHHHhhhhccc-ceeeccHHHHHHHHHHHHHHc
Confidence            444 66666666666666544 777777776666666555543

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.80  E-value=5.8  Score=28.47  Aligned_cols=34  Identities=18%  Similarity=0.276  Sum_probs=23.5

Q ss_pred             chhhHHHHHHHHHHhhhccccchhHHHHHHhhhcc
Q 012500          370 SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN  404 (462)
Q Consensus       370 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~  404 (462)
                      +.++.+.++- ...-.+++++.....||+.|++-+
T Consensus        38 s~k~~~~a~k-lssefIsGilVGa~iG~llD~~ag   71 (116)
T COG5336          38 SIKGYAQAFK-LSSEFISGILVGAGIGWLLDKFAG   71 (116)
T ss_pred             hhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4566777766 455555666666689999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	462
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	3e-13

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 70.5 bits (173), Expect = 3e-13
 Identities = 49/374 (13%), Positives = 105/374 (28%), Gaps = 39/374 (10%)

Query: 60  NPFRLIGVGLSVWTFATAGCG----SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAP 115
           NP   +  GL +        G    ++     + +   L G  +          +     
Sbjct: 90  NPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWS 149

Query: 116 VPQKTAWLSMFYMCIPTGVALGY-VYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI--K 172
             ++   +S++      G  +   ++   +    +W  A +  A   +  A+ AF +   
Sbjct: 150 QKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRD 209

Query: 173 PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLS 232
             Q  G  P E  K       +E +E                               +L+
Sbjct: 210 TPQSCGLPPIEEYKNDYPDDYNEKAEQ------------------------------ELT 239

Query: 233 QFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTI-V 291
                 + +L  K+     +  +    +      W P     + H +     +       
Sbjct: 240 AKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY 299

Query: 292 CGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELL 351
            GI GT+  G++ D++      A  +        A          +    +    V   L
Sbjct: 300 AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFL 359

Query: 352 VFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA 411
           ++     +    L          +   + +  ++ G V +S +VG   D    W    + 
Sbjct: 360 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMV 418

Query: 412 LTSIFFLAAGIWFV 425
           +     LA  +  V
Sbjct: 419 MIGGSILAVILLIV 432

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	462
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	100.0
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.97
2xut_A	524	Proton/peptide symporter family protein; transport	99.95
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.48
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.46
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.39
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.37
2xut_A	524	Proton/peptide symporter family protein; transport	99.34
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.21
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.04

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=3.3e-38  Score=300.78  Aligned_cols=369  Identities=12%  Similarity=0.062  Sum_probs=281.8

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhc----cchhHHHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGS----SFDFWSIAI   90 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~l~~   90 (462)
                      +|.+.++   + .++.+.++  +.+.+.++..+++++.|++ ||+|||+++..+.++.+++.+++++    ++|++.+++
T Consensus        51 ~~~~~~~---~-~s~~~~g~--~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  124 (451)
T 1pw4_A           51 MPYLVEQ---G-FSRGDLGF--ALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV  124 (451)
T ss_dssp             HHHTTSS---T-TCSSCHHH--HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHH
T ss_pred             HHHHHHH---h-ccHhHHHH--HHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHH
Confidence            5544443   6 77777555  9999999999999999999 9999999999999999999999999    999999999


Q ss_pred             HHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccc-hHHHHHHHHHHHHHHHHHHh
Q 012500           91 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAF  169 (462)
Q Consensus        91 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~  169 (462)
                      +|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+..| ||+.|++.++++++..++.+
T Consensus       125 ~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~  204 (451)
T 1pw4_A          125 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF  204 (451)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999888888 99999999998888777777


Q ss_pred             hccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHH
Q 012500          170 VIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV  249 (462)
Q Consensus       170 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (462)
                      +..||++++.+.+++++...+          .+     +    +.++.++++       ...+  ....++++++|.++.
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~----------~~-----~----~~~~~~~~~-------~~~~--~~~~~~~~~~~~~~~  256 (451)
T 1pw4_A          205 AMMRDTPQSCGLPPIEEYKND----------YP-----D----DYNEKAEQE-------LTAK--QIFMQYVLPNKLLWY  256 (451)
T ss_dssp             HHCCCSSTTTCCCSCTTTCCC---------------------------------------CCT--HHHHHHTSSCHHHHH
T ss_pred             hhccCCHhhcCCCChhhhccc----------cc-----c----cchhhhhcc-------cccc--cchHHHHHcCHHHHH
Confidence            777776544322111110000          00     0    000000000       0000  011467788999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhh--ccccccchhHHHHHHHHHH
Q 012500          250 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQM--GATISNAFKLLSAATFLGA  326 (462)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~~~~  326 (462)
                      ..+..++..........+.|.|+++.++.++... .......++.+++.++.|++.||+  ++|     +.+.....+..
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-----~~~~~~~~~~~  331 (451)
T 1pw4_A          257 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR-----GATGVFFMTLV  331 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH-----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----hhHHHHHHHHH
Confidence            9888888888888999999999998888886555 445777888999999999999999  877     66555554444


Q ss_pred             -HHHHHHHHh--hhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhc
Q 012500          327 -ISCLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  403 (462)
Q Consensus       327 -~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g  403 (462)
                       ...+.....  .+.+......++.+++.+...+....+..+..|++.|+++.|+.+...+.+|..++|.+.|.+.|..|
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g  411 (451)
T 1pw4_A          332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG  411 (451)
T ss_dssp             HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence             333333332  24555566666677777777777778889999999999999999655554388899999999999876


Q ss_pred             chhHHHHHHHHHHHHHHHHHH
Q 012500          404 NWRKTTLALTSIFFLAAGIWF  424 (462)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~  424 (462)
                       +...++..+++.+++.++.+
T Consensus       412 -~~~~~~~~~~~~~~~~~~~~  431 (451)
T 1pw4_A          412 -WDGGFMVMIGGSILAVILLI  431 (451)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHH
T ss_pred             -cHHHHHHHHHHHHHHHHHHH
Confidence             77777777766666555444

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=1.1e-36  Score=289.10  Aligned_cols=341  Identities=15%  Similarity=0.165  Sum_probs=270.8

Q ss_pred             HhhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhh---hccchhHHHHH
Q 012500           15 ILKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGC---GSSFDFWSIAI   90 (462)
Q Consensus        15 ~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~   90 (462)
                      .+|.+.++   ++.++.+.++  +.+.+.++..+++++.|++ ||+|||+++..+.++.+++.+++   ++++|++.+++
T Consensus        48 ~~~~~~~~---~g~s~~~~g~--~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  122 (438)
T 3o7q_A           48 LLPQFQQA---FTLTNFQAGL--IQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLV  122 (438)
T ss_dssp             HHHHHHHH---SCCCSHHHHH--HHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHH---cCCCHHHHHH--HHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence            35644444   7888888655  9999999999999999999 99999999999999999999999   89999999999


Q ss_pred             HHHHhhcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhh-cccc--------------------
Q 012500           91 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-SHLN--------------------  149 (462)
Q Consensus        91 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~~g--------------------  149 (462)
                      +|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.+++|.+++.+. +..+                    
T Consensus       123 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (438)
T 3o7q_A          123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKH  202 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhh
Confidence            9999999999999999999999999999999999999999999999999999988 5554                    


Q ss_pred             -----hHHHHHHHHHHHHHHHHHHhhc-cccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccc
Q 012500          150 -----WRYAFWGEAILMLPFAVLAFVI-KPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIG  223 (462)
Q Consensus       150 -----wr~~f~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (462)
                           ||+.|++.+++.++..++.++. .||++++.++++++                                      
T Consensus       203 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--------------------------------------  244 (438)
T 3o7q_A          203 SLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQ--------------------------------------  244 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSST--------------------------------------
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccc--------------------------------------
Confidence                 9999988887776666555443 23322110000000                                      


Q ss_pred             cccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHhCCCcchh-hhhhhHHHhhhhhhhhhh
Q 012500          224 ESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKA-GYNIYHMSNADM-MFGGVTIVCGIVGTISGG  301 (462)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g  301 (462)
                              ++..+++++++++|.++...+..++..........+.|.| +++.+|.++... .......++.+++.++.+
T Consensus       245 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  316 (438)
T 3o7q_A          245 --------GSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGT  316 (438)
T ss_dssp             --------TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------cchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence                    0012356788999999999988888888888888999999 888878886555 445677888899999999


Q ss_pred             HHHhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHH
Q 012500          302 FILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTV  381 (462)
Q Consensus       302 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (462)
                      ++.||+++|     +.+..+..+..+..+.....++.+. .....+.+++.+...+.......+.+|++ ++.+.++.. 
T Consensus       317 ~l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-  388 (438)
T 3o7q_A          317 WLISRFAPH-----KVLAAYALIAMALCLISAFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-  388 (438)
T ss_dssp             HHHHHSCHH-----HHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-
T ss_pred             HHHHHhcch-----HHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-
Confidence            999999998     7777766666666655555555443 34446667777777777788878888876 888888874 


Q ss_pred             HHhhhccccchhHHHHHHhhhcchhHHHHHHHHH
Q 012500          382 SIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  415 (462)
Q Consensus       382 ~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  415 (462)
                      ... +|..++|.+.|++.|..|+++..+.+.+++
T Consensus       389 ~~~-~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  421 (438)
T 3o7q_A          389 MTI-IGGGIVTPVMGFVSDAAGNIPTAELIPALC  421 (438)
T ss_dssp             HTT-HHHHHHHHHHHHHHHHHTSSGGGGHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            444 589999999999999988677777655444

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=2.3e-35  Score=284.24  Aligned_cols=387  Identities=13%  Similarity=0.082  Sum_probs=246.2

Q ss_pred             chhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhh------------------ccchhHHHHHHHHHh
Q 012500           35 SSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCG------------------SSFDFWSIAICRMLV   95 (462)
Q Consensus        35 ~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~   95 (462)
                      .+++.+.+.+|.++++++.|++ ||+|||+++.++.+++.+++++++                  +++|+++++++|+++
T Consensus        57 ~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~  136 (491)
T 4gc0_A           57 LGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIG  136 (491)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHH
Confidence            4669999999999999999999 999999999999999999999988                  478999999999999


Q ss_pred             hcccccccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcc--------cchHHHHHHHHHHHHHHHHH
Q 012500           96 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH--------LNWRYAFWGEAILMLPFAVL  167 (462)
Q Consensus        96 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~--------~gwr~~f~~~~~~~~~~~~~  167 (462)
                      |++.|...+..+.+++|+.|+++|++..++.+.+...|.++++.++..+...        .+||+.+.+..+..++..+ 
T Consensus       137 G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  215 (491)
T 4gc0_A          137 GIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLM-  215 (491)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhh-
Confidence            9999999999999999999999999999999999999999999888776532        4588888887776655544 


Q ss_pred             HhhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHH
Q 012500          168 AFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVY  247 (462)
Q Consensus       168 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (462)
                      ..+..||++++...+++.++..+  ..++....+.   ..++..+..+...           ..+. .......++.+..
T Consensus       216 ~~~~~peSp~~L~~~~~~~~a~~--~l~~~~~~~~---~~~~~~~~~~~~~-----------~~~~-~~~~~~~~~~~~~  278 (491)
T 4gc0_A          216 LLYTVPESPRWLMSRGKQEQAEG--ILRKIMGNTL---ATQAVQEIKHSLD-----------HGRK-TGGRLLMFGVGVI  278 (491)
T ss_dssp             HGGGSCCCHHHHHHTTCHHHHHH--HHHHHHHHHH---HHHHHHHHHHHHH-----------HHHH-HTTHHHHSCCTHH
T ss_pred             hhhcCCCChHHHHHcCchhHHHH--hHHHhcCCch---hHHHHHHHHHHHH-----------hhhh-hhhHHHHhcccHH
Confidence            44455888776433322221100  0000000000   0000000000000           0000 0111223333333


Q ss_pred             HHHHHHH-HHHHHHHHHHHHHhhHHHHHHhCCCcchhhhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHH
Q 012500          248 VVNVLGY-IAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  326 (462)
Q Consensus       248 ~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  326 (462)
                      ....... +......+.+..+.|.+.++....+...........+..+++.++++++.||+|||     +.+........
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr-----~~~~~~~~~~~  353 (491)
T 4gc0_A          279 VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK-----PLQIIGALGMA  353 (491)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH-----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCc-----chhccchHHHH
Confidence            3333322 33333455666677766665433333333444667788889999999999999998     66655554444


Q ss_pred             HHHHHHHHh----hhhHHHHHHHHHHHHHHHhccccc-eeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhh
Q 012500          327 ISCLTAFCL----SSLYGFLALFTVGELLVFATQAPV-NYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  401 (462)
Q Consensus       327 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~  401 (462)
                      +..+.....    .+.+..+....+...+.+....+. +.+..|.+|++.|+++.|+.+...+. ++++++.+.+.+.+.
T Consensus       354 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~-~~~i~~~~~p~l~~~  432 (491)
T 4gc0_A          354 IGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWL-ANYFVSWTFPMMDKN  432 (491)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHH-HHHHHHTHHHHHCHH
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            433322211    122333333344444444444443 45677888899999999999655555 888888887776553


Q ss_pred             hc-----chhHHHHHHHHHHHHHHHHHHHHHhhcc-ccccchhhhcccCchh
Q 012500          402 VN-----NWRKTTLALTSIFFLAAGIWFVGIFLKS-IDKFNEDGENQISLDS  447 (462)
Q Consensus       402 ~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  447 (462)
                      ..     +....+++.+++.+++.+.  .+.++|| |+|+.||+|+..+++.
T Consensus       433 ~~~~~~~~~~~~~~i~~~~~~~~~i~--~~~~~PETkg~tLeei~~~f~~~~  482 (491)
T 4gc0_A          433 SWLVAHFHNGFSYWIYGCMGVLAALF--MWKFVPETKGKTLEELEALWEPET  482 (491)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHH--HHHHCCCCTTCCHHHHGGGTC---
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHHH--HHheecCCCCCCHHHHHHHhCCCC
Confidence            21     1223455555444443332  2346676 8899999888776543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=100.00  E-value=4.4e-35  Score=272.15  Aligned_cols=327  Identities=15%  Similarity=0.049  Sum_probs=258.2

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccc
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS  104 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~  104 (462)
                      ++.++.+.+.  ..+.+.++..+++++.|++ ||+|||+++..+.++.+++.++.++++|++.+++.|+++|++.+...+
T Consensus        30 ~g~s~~~~g~--~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~  107 (375)
T 2gfp_A           30 LNVREGAVQS--VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGV  107 (375)
T ss_dssp             SSSTTHHHHH--HHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhh
Confidence            7888888555  9999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             cccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCccc
Q 012500          105 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAES  184 (462)
Q Consensus       105 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  184 (462)
                      ...+++.|++|+++|++++++.+.+..+|..++|.+++.+.++.+||+.|++.++..++..+..++..||++++.+++++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (375)
T 2gfp_A          108 MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTR  187 (375)
T ss_dssp             HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCCC
T ss_pred             hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccccc
Confidence            99999999999999999999999999999999999999999989999999999888777766555666664322110000


Q ss_pred             cccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 012500          185 GKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAY  264 (462)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (462)
                         .                                              .++.++++++|.++...+..++........
T Consensus       188 ---~----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (375)
T 2gfp_A          188 ---L----------------------------------------------LTSYKTLFGNSGFNCYLLMLIGGLAGIAAF  218 (375)
T ss_dssp             ---T----------------------------------------------TTCSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---H----------------------------------------------HHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence               0                                              112346678888888888888888888889


Q ss_pred             HHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHH-HHHHHHHHHHHH--hhhhHH
Q 012500          265 SYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT-FLGAISCLTAFC--LSSLYG  340 (462)
Q Consensus       265 ~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~  340 (462)
                      ..+.|.++++..|.++... .......++.+++.++.+++.||.+++     ....... ............  .++.+.
T Consensus       219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (375)
T 2gfp_A          219 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL-----MWQSVICCLLAGLLMWIPDWFGVMNVWT  293 (375)
T ss_dssp             HHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH-----HHHHHHHHHHTSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhccccHHH
Confidence            9999999998777776554 444667788888888999999988763     3222222 111111111111  234555


Q ss_pred             HHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHH
Q 012500          341 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA  411 (462)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  411 (462)
                      ..+...+.+++.+...+.......+..| ++|+++.|+.+...+. |..++|.+.|.+.+..+ +...+..
T Consensus       294 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~~~-~~~~~~~  361 (375)
T 2gfp_A          294 LLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNI-GSGVLASLSAMLPQTGQ-GSLGLLM  361 (375)
T ss_dssp             HHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHH-HHHCCSTTCTHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHH-HHHHHHHHHHHHhcCCc-ccHHHHH
Confidence            5666777788888888888888888887 8999999999766665 99999999999987643 5554444

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=100.00  E-value=4.5e-33  Score=268.20  Aligned_cols=402  Identities=11%  Similarity=-0.031  Sum_probs=256.7

Q ss_pred             hhhhhhhc---cccccccccccchhhHHHHHHHHHhhhhhhccc-cc-cCCchhHHHHHHHHHHHHHhhhccchhHHHHH
Q 012500           16 LKRSMKKK---KFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CS-HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAI   90 (462)
Q Consensus        16 ~p~~~~~~---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~   90 (462)
                      +|.++.++   .+++.+..+.+.  +.+.+.++..+++++.|++ || +|||+++..+.++.+++.+++++++|++.+++
T Consensus        36 ~~~~~~~~~~~~~~~~s~~~~~~--~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (491)
T 4aps_A           36 LLYYMWFLISTGDLHITRATAAS--IMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFG  113 (491)
T ss_dssp             HHHHHHHHHHHTSCCSCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHH
T ss_pred             HHHHHHhccchhhcCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            44455443   346778887555  9999999999999999999 99 89999999999999999999999999999999


Q ss_pred             HHHHhhcccccccccccchhcccCCCCC--chhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHH
Q 012500           91 CRMLVGVGEASFISLAAPFIDDNAPVPQ--KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLA  168 (462)
Q Consensus        91 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~  168 (462)
                      +|+++|++.+...+...+++.|++|+++  |++++++++.+.++|..++|.+++.+.++.|||+.|++.++..++..+..
T Consensus       114 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~  193 (491)
T 4aps_A          114 SIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVY  193 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988  77788889999999999999999999999999999999888776666655


Q ss_pred             hhccccccCCCCCcccccccccccccccccccc------------ccccccccccchhhhhhhhc--cccccchhhhhcc
Q 012500          169 FVIKPLQLKGFAPAESGKAQVVASVSEGSEASN------------LNDHVSEDISDQASERSIKS--IGESRFLNQLSQF  234 (462)
Q Consensus       169 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  234 (462)
                      ++..|+..++..++++.+.. +++..+..+...            .......+.++.........  .........+++.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (491)
T 4aps_A          194 YFGGKKTLDPHYLRPTDPLA-PEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSV  272 (491)
T ss_dssp             HHHHHTTCCSCCSCCSCCCS-HHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHhCcccccccccCCCCccc-cchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcc
Confidence            55444432221111110000 000000000000            00000000000000000000  0000000000000


Q ss_pred             hhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcch-hhhhhhHHHhhhhhhhhhhHHHhhhcccccc
Q 012500          235 SQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISN  313 (462)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~  313 (462)
                      ..+.++..+....+...+..............+.|.|.++..+.+... ........+..+++.++.+++.||++||...
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~  352 (491)
T 4aps_A          273 KVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPS  352 (491)
T ss_dssp             ---------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCC
Confidence            000011112222334444444455555566677888888877776333 3445667788888899999999999988443


Q ss_pred             chhHHHHHHHHHHHHHHHHHHh---------hhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHh
Q 012500          314 AFKLLSAATFLGAISCLTAFCL---------SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIH  384 (462)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (462)
                      ....+..+..+...........         .+.+......++.+++.+...+....+..+..|++.|+++.|+.+...+
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  432 (491)
T 4aps_A          353 SPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSS  432 (491)
T ss_dssp             CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            2233334444444433333222         1445556666777777777788888899999999999999999976666


Q ss_pred             hhccccchhHHHHHHhhhcchhHHHHHHHHHHHHHHHHH
Q 012500          385 IFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  423 (462)
Q Consensus       385 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  423 (462)
                      . |..++|.+.+.+.+.  ++...+...+.+.+++.++.
T Consensus       433 ~-g~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  468 (491)
T 4aps_A          433 V-GSALNAQLVTLYNAK--SEVAYFSYFGLGSVVLGIVL  468 (491)
T ss_dssp             H-HHHHHHHHGGGGGGS--STTHHHHHTHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHH
Confidence            5 999999998888774  34456665555544444433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.97  E-value=1.8e-30  Score=244.06  Aligned_cols=354  Identities=12%  Similarity=0.008  Sum_probs=227.9

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHH---HhhhccchhH-HHHH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFAT---AGCGSSFDFW-SIAI   90 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~---~~~~~~~~~~-~l~~   90 (462)
                      +|.+++++  ++.++.+.+.  +.+.+.++..+++++.|++ ||+|||+++..+..+++++.   ...++++... .++.
T Consensus        30 ~~~~l~~~--~g~s~~~~g~--~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (417)
T 2cfq_A           30 FPIWLHDI--NHISKSDTGI--IFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILV  105 (417)
T ss_dssp             HHHHHHTT--TCCCTTTSHH--HHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCH
T ss_pred             HHHHHHHH--hCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555443  6778888655  9999999999999999999 99999999999888775532   2123332221 2455


Q ss_pred             HHHHhhcccccccccccchhcccCCC--CCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHH
Q 012500           91 CRMLVGVGEASFISLAAPFIDDNAPV--PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLA  168 (462)
Q Consensus        91 ~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~  168 (462)
                      .+++.|++.+...+.....+.++.++  ++|+...+.......+|..++|.+++++.+ .+||+.|++.++..++..+..
T Consensus       106 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~  184 (417)
T 2cfq_A          106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLL  184 (417)
T ss_dssp             HHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHS
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHH
Confidence            67777777776665555556555543  456777888888899999999999999887 589999998877654444433


Q ss_pred             hhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHH
Q 012500          169 FVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYV  248 (462)
Q Consensus       169 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (462)
                      ++..||+++.   .++++..             +     ++  +       ++           ...++.++++++|.++
T Consensus       185 ~~~~~~~~~~---~~~~~~~-------------~-----~~--~-------~~-----------~~~~~~~~~~~~~~~~  223 (417)
T 2cfq_A          185 FFAKTDAPSS---ATVANAV-------------G-----AN--H-------SA-----------FSLKLALELFRQPKLW  223 (417)
T ss_dssp             CSSCCCCSCS---SCSSSSS-------------S-----SC--C-------CC-----------CCHHHHHHHTTCHHHH
T ss_pred             HHcCcccccc---ccccccc-------------c-----cc--c-------cc-----------ccHHHHHHHhcCCchh
Confidence            3332332110   0000000             0     00  0       00           0012355678888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhCCC---cchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHH
Q 012500          249 VNVLGYIAYNFVIGAYSYWGPKAGYNIYHMS---NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFL  324 (462)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  324 (462)
                      ...+..+........+..+.|.|+.+.++..   .... ....+..++.+++.++.++++||++||     +.+..+..+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~l~~~~~~  298 (417)
T 2cfq_A          224 FLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----NALLLAGTI  298 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----HHHHHHHHH
Confidence            7766555555555556667888887655422   1112 233455667788899999999999998     766655555


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHH-HHHHhhhccccchhHHHHHHhhhc
Q 012500          325 GAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS-TVSIHIFGDVPSSPLVGVLQDHVN  403 (462)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~l~~~~g  403 (462)
                      ..+........++.+..++...+.+++.....+....+..+..|++.|+++.+.. +...+ +|++++|.+.|++.|..|
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-lg~~~gp~l~G~l~~~~g  377 (417)
T 2cfq_A          299 MSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQ-LAMIFMSVLAGNMYESIG  377 (417)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHH-HHHHHHTHHHHTHHHHSH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHh-HHHHHhhhhHHHHHHhcC
Confidence            5544444333344444444444445544444444566788889999999999985 44444 488999999999998765


Q ss_pred             chhHHHHHHHHHHHHHHHH
Q 012500          404 NWRKTTLALTSIFFLAAGI  422 (462)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~  422 (462)
                       +...+...+++.+++.++
T Consensus       378 -~~~~f~~~~~~~l~~~~~  395 (417)
T 2cfq_A          378 -FQGAYLVLGLVALGFTLI  395 (417)
T ss_dssp             -HHHHHHHHHHHHHHHHHH
T ss_pred             -cHHHHHHHHHHHHHHHHH
Confidence             666666666655554443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.95  E-value=4.9e-28  Score=234.90  Aligned_cols=152  Identities=15%  Similarity=0.088  Sum_probs=133.9

Q ss_pred             hhhhhhhccccc------cccccccchhhHHHHHHHHHhhhhhhccc-ccc-CCchhHHHHHHHHHHHHHhhhccc-hhH
Q 012500           16 LKRSMKKKKFLS------LRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSH-NPFRLIGVGLSVWTFATAGCGSSF-DFW   86 (462)
Q Consensus        16 ~p~~~~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~   86 (462)
                      +|.++.++  ++      .++.+.+.  +.+.+.++..++.++.|++ ||+ |||+++..+.++.+++.+++++++ |++
T Consensus        35 l~~~l~~~--~~~~~~~~~s~~~~g~--~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  110 (524)
T 2xut_A           35 LTPFLMTA--LLLSIPEELRGAVAKD--VFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQ  110 (524)
T ss_dssp             HHHHHHHS--CSSCCSSSTTTTTHHH--HHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred             HHHHHHHH--hccccccccCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHH
Confidence            55555544  55      77777555  9999999999999999999 999 999999999999999999999999 999


Q ss_pred             HHHHHHHHhhcccccccccccchhcccCCCCCchhHHHH---HHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHH
Q 012500           87 SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSM---FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLP  163 (462)
Q Consensus        87 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~  163 (462)
                      .+++.|++.|++.+...+...+++.|++|+++|+++.+.   .+.+.++|..++|.+++.+.++.|||+.|++.+++.++
T Consensus       111 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~  190 (524)
T 2xut_A          111 GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFV  190 (524)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999877666   99999999999999999999989999999999887666


Q ss_pred             HHHHHhhc
Q 012500          164 FAVLAFVI  171 (462)
Q Consensus       164 ~~~~~~~~  171 (462)
                      ..+..++.
T Consensus       191 ~~~~~~~~  198 (524)
T 2xut_A          191 ATVFFWLG  198 (524)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHHHHh
Confidence            55554443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.48  E-value=5.7e-13  Score=126.32  Aligned_cols=171  Identities=16%  Similarity=0.094  Sum_probs=132.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHH
Q 012500          244 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  322 (462)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  322 (462)
                      .+.+....+..+........+...+|.+.++.  .++.+. ...+...++..++.++.|+++||+|||     +.+..+.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r-----~~l~~~~   99 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG--FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR-----VFLPAGL   99 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST--TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCch-----HHHHHHH
Confidence            34455555555666666666667778776664  565444 555778889999999999999999999     8888877


Q ss_pred             HHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHH
Q 012500          323 FLGAISCLTAFC----LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  398 (462)
Q Consensus       323 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l  398 (462)
                      .+..+..+....    .++.+..++..++.+++.+...+....++.+.+|+++|+++.++.+..... |.+++|.+.+++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l  178 (451)
T 1pw4_A          100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV-GGGIPPLLFLLG  178 (451)
T ss_dssp             HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHH-HHTSHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            777777777666    677788888888889998888888899999999999999999999766665 999999999998


Q ss_pred             HhhhcchhHHHHHHHHHHHHHHHH
Q 012500          399 QDHVNNWRKTTLALTSIFFLAAGI  422 (462)
Q Consensus       399 ~~~~g~~~~~~~~~~~~~~~~~~~  422 (462)
                      .+..|+|+..+++.+.+.++..++
T Consensus       179 ~~~~g~w~~~f~~~~~~~~~~~~~  202 (451)
T 1pw4_A          179 MAWFNDWHAALYMPAFCAILVALF  202 (451)
T ss_dssp             HHHTCCSTTCTHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHH
Confidence            887665877777776665444433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.46  E-value=8.6e-13  Score=126.56  Aligned_cols=172  Identities=11%  Similarity=0.039  Sum_probs=138.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-----hCCCcchh-hhhhhHHHhhhhhhhhhhHHHhh-hccccccchhH
Q 012500          245 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI-----YHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAFKL  317 (462)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~  317 (462)
                      +.++......++.....+....+++.|+++.     +|.++.+. ...+...++..++.++.|+++|| +|||     +.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r-----~~   87 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR-----PA   87 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH-----HH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-----HH
Confidence            4566666667777788888888999999988     88887665 45578889999999999999999 8999     88


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcch--hhHHHHHHHHHHhhhccccchhHH
Q 012500          318 LSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSL--RALSMAISTVSIHIFGDVPSSPLV  395 (462)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~  395 (462)
                      +..+..+..+..+.....++.+..++..++.+++.+...+....++.+.+|+++  |+.+.+..+...+. |..++|.+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~  166 (491)
T 4aps_A           88 VFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINL-GAFIAPLIV  166 (491)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHH-HHHHHHHHH
Confidence            888887777777777777788888888888899988888888999999999987  77788877666565 999999999


Q ss_pred             HHHHhhhcchhHHHHHHHHHHHHHHHHH
Q 012500          396 GVLQDHVNNWRKTTLALTSIFFLAAGIW  423 (462)
Q Consensus       396 g~l~~~~g~~~~~~~~~~~~~~~~~~~~  423 (462)
                      +.+.+..| |+..++..+...+++.+..
T Consensus       167 ~~l~~~~g-~~~~f~~~~~~~~~~~~~~  193 (491)
T 4aps_A          167 GAAQEAAG-YHVAFSLAAIGMFIGLLVY  193 (491)
T ss_dssp             HHHHHHSC-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhh-HHHHHHHHHHHHHHHHHHH
Confidence            99998866 8888877766555544443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.39  E-value=4.7e-13  Score=125.40  Aligned_cols=139  Identities=8%  Similarity=-0.008  Sum_probs=119.6

Q ss_pred             hhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccccccchhcccC
Q 012500           36 SVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA  114 (462)
Q Consensus        36 s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~  114 (462)
                      ++..+...++..++.++.+++ ||+|||+++..+.++.+++.+..++.++.+.+++..++.+++.+...+....++.|.+
T Consensus       262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  341 (417)
T 2cfq_A          262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF  341 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            446777778888899999999 9999999999999999888888888888888888888888887766777788999999


Q ss_pred             CCCCchhHHHH-HHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhcccc
Q 012500          115 PVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  174 (462)
Q Consensus       115 ~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  174 (462)
                      |++.|+++.++ ++....+|..++|.+++.+.++.|++..|.+.+++.++..++.++..||
T Consensus       342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~  402 (417)
T 2cfq_A          342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            99999999998 5888889999999999999998899999999888877777666665554

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.37  E-value=6.4e-12  Score=118.59  Aligned_cols=149  Identities=9%  Similarity=0.034  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHH
Q 012500          249 VNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI  327 (462)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  327 (462)
                      ...+..+.............|. +.+.++.+..+. ...+...++..++.++.|+++||+|||     +.+..+..+..+
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----~~l~~~~~~~~~  103 (438)
T 3o7q_A           30 LLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK-----AGIITGLFLYAL  103 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHH-----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch-----HHHHHHHHHHHH
Confidence            3334344455555566666776 455578887665 455788889999999999999999999     888777777777


Q ss_pred             HHHHH---HHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHH-hhhc
Q 012500          328 SCLTA---FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ-DHVN  403 (462)
Q Consensus       328 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~-~~~g  403 (462)
                      ..++.   ...++.+..++..++.|++.+...+....++.+..|+++|+.+.++.+...+. |..++|.+.+.+. +..+
T Consensus       104 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~~~  182 (438)
T 3o7q_A          104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSF-GAIIAVVFGQSLILSNVP  182 (438)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHH-HHHHHHHHTTHHHHTSSC
T ss_pred             HHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccc
Confidence            66665   55677888888888899999988888899999999999999999999766665 9999999999998 5444


Q ss_pred             c
Q 012500          404 N  404 (462)
Q Consensus       404 ~  404 (462)
                      .
T Consensus       183 ~  183 (438)
T 3o7q_A          183 H  183 (438)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.34  E-value=9.6e-12  Score=120.31  Aligned_cols=171  Identities=12%  Similarity=0.007  Sum_probs=132.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhC------CCcchh-hhhhhHHHhhhhhhhhhhHHHhhh-ccccccch
Q 012500          244 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH------MSNADM-MFGGVTIVCGIVGTISGGFILDQM-GATISNAF  315 (462)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~  315 (462)
                      ++.++...+..++.....+....++|.|+.+..+      .++... ...+...++..++.++.|+++||+ |||     
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r-----   85 (524)
T 2xut_A           11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY-----   85 (524)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----
Confidence            3455666666777777888888899999988888      776555 455778888899999999999999 998     


Q ss_pred             hHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHH---HHHHHhhhccccc
Q 012500          316 KLLSAATFLGAISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAI---STVSIHIFGDVPS  391 (462)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~  391 (462)
                      +.+..+..+..+..++....+ +.+..++..++.+++.+...+....++.+.+|+++|+++.+.   .+...+. |..++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-g~~~g  164 (524)
T 2xut_A           86 NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINF-GSFFA  164 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHH-HHHHH
Confidence            777777777766666666666 777777778888888888888889999999999999776666   6555555 88999


Q ss_pred             hhHHHHHHhhhcchhHHHHHHHHHHHHHHH
Q 012500          392 SPLVGVLQDHVNNWRKTTLALTSIFFLAAG  421 (462)
Q Consensus       392 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  421 (462)
                      |.+.+.+.+..| |+..+.+.+...++..+
T Consensus       165 ~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~  193 (524)
T 2xut_A          165 SLSMPLLLKNFG-AAVAFGIPGVLMFVATV  193 (524)
T ss_dssp             HHTSTHHHHTSC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccc-HHHHHHHHHHHHHHHHH
Confidence            999999988765 77777766665444433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.21  E-value=2.3e-11  Score=112.29  Aligned_cols=159  Identities=14%  Similarity=0.067  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHH
Q 012500          251 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC  329 (462)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  329 (462)
                      .+..++............|.+.+ .++.++.+. ...+...++..++.++.|+++||+|||     +.+..+..+.....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~~   79 (375)
T 2gfp_A            6 VLLVAVGQMAQTIYIPAIADMAR-DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRR-----PVILVGMSIFMLAT   79 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT-TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCC-----CCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----hhHHHHHHHHHHHH
Confidence            33444555555556666676544 467776555 455778888999999999999999998     67777777766666


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHH
Q 012500          330 LTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTT  409 (462)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~  409 (462)
                      ......++.+..++...+.+++.+...+....++.+..|+++|+++.+..+..... |..++|.+.+++.+..+ |+..+
T Consensus        80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~-~~~~~  157 (375)
T 2gfp_A           80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILV-SPLLAPLIGGLLDTMWN-WRACY  157 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHH-HHHHHHHHHHHSSCHHH-HHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHhcc-HHHHH
Confidence            66666677888888888888888888888888899999999999999999766655 99999999999988765 76666


Q ss_pred             HHHHHHHH
Q 012500          410 LALTSIFF  417 (462)
Q Consensus       410 ~~~~~~~~  417 (462)
                      ...+...+
T Consensus       158 ~~~~~~~~  165 (375)
T 2gfp_A          158 LFLLVLCA  165 (375)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            65555433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.04  E-value=4.7e-10  Score=107.46  Aligned_cols=139  Identities=8%  Similarity=0.018  Sum_probs=103.5

Q ss_pred             hHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhcc-----chhHHHH-HHHHHhhcccccccccccchh
Q 012500           38 NVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIA-ICRMLVGVGEASFISLAAPFI  110 (462)
Q Consensus        38 ~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~-~~r~l~G~~~g~~~~~~~~~i  110 (462)
                      ......+...++.++++++ ||+|||+.++.+.....++.+..+..     ++...+. +.-+..+.+.+ ..+....+.
T Consensus       317 ~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  395 (491)
T 4gc0_A          317 QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS-WGPVCWVLL  395 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT-TTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH-HHHHHHHHH
Confidence            5566677788888999999 99999999999888888777665532     1222222 22222233322 345667899


Q ss_pred             cccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhc------ccchHHHHHHHHHHHHHHHHHHhhccccccC
Q 012500          111 DDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLK  177 (462)
Q Consensus       111 ~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~------~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~  177 (462)
                      +|.+|.+.|++++++......+|..+++.+...+.+      ..++.+.|++.++++++..++.++++||+..
T Consensus       396 ~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg  468 (491)
T 4gc0_A          396 SEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG  468 (491)
T ss_dssp             HHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred             HHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence            999999999999999999999999988887765543      3456778899999998988888888998743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	462
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	0.001

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 10/120 (8%), Positives = 33/120 (27%), Gaps = 1/120 (0%)

Query: 53  HCSQCSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDD 112
                       + +  ++ +    G   +     + I + L        +     +I  
Sbjct: 280 PLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITS 339

Query: 113 NAPVPQKTAWLSMFY-MCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI 171
              V        + +       +    V  G +   + ++ A+    ++ L F +++   
Sbjct: 340 QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	462
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.95
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.45
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.41

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1e-37  Score=294.76  Aligned_cols=366  Identities=13%  Similarity=0.060  Sum_probs=270.0

Q ss_pred             cccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccc----hhHHHHHHHHHhhcccc
Q 012500           26 LSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEA  100 (462)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g  100 (462)
                      ++.|+++.++  +.+.+.+++.++++++|++ ||+|||+++..+.++.+++.+++++++    +++.+++.|++.|++.+
T Consensus        54 ~g~s~~~~g~--~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  131 (447)
T d1pw4a_          54 QGFSRGDLGF--ALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQG  131 (447)
T ss_dssp             STTCSSCHHH--HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHH
T ss_pred             hCcCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhh
Confidence            6888888655  9999999999999999999 999999999999999999999988774    78899999999999999


Q ss_pred             cccccccchhcccCCCCCchhHHHHHHhhhhhhhhhhhhHHHHhhcc-cchHHHHHHHHHHHHHHHHHHhhccccccCCC
Q 012500          101 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF  179 (462)
Q Consensus       101 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~  179 (462)
                      ...+....++.|++|+++|++++++.+.+..+|..+++.+++.+.+. .+||+.|++.+++.++..++.++..++.++..
T Consensus       132 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (447)
T d1pw4a_         132 MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC  211 (447)
T ss_dssp             HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT
T ss_pred             hhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhc
Confidence            99999999999999999999999999999999999999998877654 47999999999988888888777776654432


Q ss_pred             CCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHHHHHHHHHHHHH
Q 012500          180 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF  259 (462)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (462)
                      ..++.++..                   ++..++..+..++         +........+..++++.++......++...
T Consensus       212 ~~~~~~~~~-------------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (447)
T d1pw4a_         212 GLPPIEEYK-------------------NDYPDDYNEKAEQ---------ELTAKQIFMQYVLPNKLLWYIAIANVFVYL  263 (447)
T ss_dssp             CCCSCTTTC-------------------CC----------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhh-------------------hhcccchhhcccc---------ccchhhHHHHHHHcCchHHHHHHHhhhhhh
Confidence            221111110                   0000000000000         000012245667888999988888888888


Q ss_pred             HHHHHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHH--Hhh
Q 012500          260 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF--CLS  336 (462)
Q Consensus       260 ~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  336 (462)
                      ..+....+.|.|+.+..+.+.... .......+..+++.++.|++.||++++...  ........+.........  ...
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  341 (447)
T d1pw4a_         264 LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG--ATGVFFMTLVTIATIVYWMNPAG  341 (447)
T ss_dssp             HHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH--HHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             hhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccc--cccchhHHHHHHHHHHHHhcccc
Confidence            888999999999999888886555 445777888899999999999999987321  111111111111111111  123


Q ss_pred             hhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHH
Q 012500          337 SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIF  416 (462)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  416 (462)
                      +.+...+..++.+++.+...+.......+..|++.|+++.|+.+...+..|.+++|.+.|++.|..| +...++....+.
T Consensus       342 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~~~~~~~~  420 (447)
T d1pw4a_         342 NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGS  420 (447)
T ss_dssp             CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHH
Confidence            4555556666667666666667777888899999999999998777676567778999999999887 666666666655


Q ss_pred             HHHHHHHH
Q 012500          417 FLAAGIWF  424 (462)
Q Consensus       417 ~~~~~~~~  424 (462)
                      +++.++..
T Consensus       421 ~~~~~~~~  428 (447)
T d1pw4a_         421 ILAVILLI  428 (447)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55444443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.3e-27  Score=222.08  Aligned_cols=357  Identities=12%  Similarity=-0.010  Sum_probs=239.7

Q ss_pred             hhhhhhhccccccccccccchhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHH----HH
Q 012500           16 LKRSMKKKKFLSLRKLAAGSSVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSI----AI   90 (462)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l----~~   90 (462)
                      +|.+++++  ++.|+++.++  +.+.+.++..+++++.|++ ||+|||++++.+..+..++..+..+..+....    ++
T Consensus        30 l~~~l~~~--~g~s~~~~g~--i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (417)
T d1pv7a_          30 FPIWLHDI--NHISKSDTGI--IFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILV  105 (417)
T ss_dssp             HHHHHHHH--HCCCHHHHHH--HHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHH
T ss_pred             HHHHHHHc--cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            45444443  6788888666  9999999999999999999 99999999999999999999888887765543    45


Q ss_pred             HHHHhhcccccccccccchhcccCCC--CCchhHHHHHHhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHH
Q 012500           91 CRMLVGVGEASFISLAAPFIDDNAPV--PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLA  168 (462)
Q Consensus        91 ~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~  168 (462)
                      .+.+.+.+.+...........+..++  +++.+..+........+..+++.+++.+.+. +|+..+........+..+..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~  184 (417)
T d1pv7a_         106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLL  184 (417)
T ss_dssp             HHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHH
Confidence            56666666665555554444444432  3455677788888889999999999988765 56666666666666666666


Q ss_pred             hhccccccCCCCCccccccccccccccccccccccccccccccchhhhhhhhccccccchhhhhcchhhHHHHhhhhHHH
Q 012500          169 FVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYV  248 (462)
Q Consensus       169 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (462)
                      ++..|+.++..+++++++...+                                         +......++..+++..+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~  223 (417)
T d1pv7a_         185 FFAKTDAPSSATVANAVGANHS-----------------------------------------AFSLKLALELFRQPKLW  223 (417)
T ss_dssp             HSSCCCSCSSSCSSHHHHSCCC-----------------------------------------CCCHHHHHHHTTSSHHH
T ss_pred             HHHhcccccchhhhhhhhhhcc-----------------------------------------ccccccccccccccccc
Confidence            6666654433222111111000                                         00011222333444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHh---CCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHH
Q 012500          249 VNVLGYIAYNFVIGAYSYWGPKAGYNIY---HMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFL  324 (462)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  324 (462)
                      ....................+.+.....   +.+.... .......++..++..+.+++.||.+++     +.+..+..+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~-----~~~~~~~~~  298 (417)
T d1pv7a_         224 FLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----NALLLAGTI  298 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH-----HHHHHHHHH
T ss_pred             chhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccc-----cchhhhHHH
Confidence            3333333333332222222222222211   1111112 333556677788899999999999998     788777777


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcc
Q 012500          325 GAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN  404 (462)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~  404 (462)
                      .....+.....++.+..++...+.+++.+...+....+..+.+|++.|+++.++.....+.+|..++|.+.|++.|..| 
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-  377 (417)
T d1pv7a_         299 MSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-  377 (417)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence            7777777777778888888888888888888888899999999999999999986444554588999999999999987 


Q ss_pred             hhHHHHHHHHHHHHHHHHHH
Q 012500          405 WRKTTLALTSIFFLAAGIWF  424 (462)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~  424 (462)
                      ++..+++.+++.++..++..
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~  397 (417)
T d1pv7a_         378 FQGAYLVLGLVALGFTLISV  397 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            66777776666555444433

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=5.6e-13  Score=123.83  Aligned_cols=153  Identities=14%  Similarity=0.051  Sum_probs=114.5

Q ss_pred             HHHHHhhHHHHHHhCCCcchh-hhhhhHHHhhhhhhhhhhHHHhhhccccccchhHHHHHHHHHHHHHHHHHHh----hh
Q 012500          263 AYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL----SS  337 (462)
Q Consensus       263 ~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  337 (462)
                      .+....| ++++ .|.+..+. ...+...++..++.++.|+++||+|||     +.+..+.++..+..++....    ++
T Consensus        43 ~~~~~~p-~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r-----~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (447)
T d1pw4a_          43 NFALAMP-YLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR-----VFLPAGLILAAAVMLFMGFVPWATSS  115 (447)
T ss_dssp             SHHHHHH-HTTS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----HHHHHHHHHHHHHHHHHHHCHHHHSS
T ss_pred             HHHHHHH-HHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----HHHHHHHHHHHHHHhhccccchhhhh
Confidence            3444455 4444 67777666 455788899999999999999999999     77777766666555544332    35


Q ss_pred             hHHHHHHHHHHHHHHHhccccceeeeeccCCcchhhHHHHHHHHHHhhhccccchhHHHHHHhhhcchhHHHHHHHHHHH
Q 012500          338 LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFF  417 (462)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  417 (462)
                      .+..++.-++.+++.+...+....++.+.+|+++|+++.++.+..... |..++|.+.+.+.+..++|+..++..+.+.+
T Consensus       116 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~  194 (447)
T d1pw4a_         116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV-GGGIPPLLFLLGMAWFNDWHAALYMPAFCAI  194 (447)
T ss_dssp             SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHH-HHTSHHHHHHHHHHHTCCSTTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccch-hhhhhhhhhhhHhhhhhcccccchhhhhhHH
Confidence            566677777788888888888889999999999999999999766665 9999998888888877778777776666554


Q ss_pred             HHHHHH
Q 012500          418 LAAGIW  423 (462)
Q Consensus       418 ~~~~~~  423 (462)
                      +..++.
T Consensus       195 ~~~~~~  200 (447)
T d1pw4a_         195 LVALFA  200 (447)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=9.7e-14  Score=127.34  Aligned_cols=139  Identities=7%  Similarity=-0.026  Sum_probs=127.2

Q ss_pred             hhhHHHHHHHHHhhhhhhccc-cccCCchhHHHHHHHHHHHHHhhhccchhHHHHHHHHHhhcccccccccccchhcccC
Q 012500           36 SVNVLEFTVTQLVCSSHHCSQ-CSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA  114 (462)
Q Consensus        36 s~~~~~~~~~~~~~~~~~g~l-dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~  114 (462)
                      +.......++..++..+.+++ ||+|+|+.+..+.++.+++.++..+.++.+.+++..++.|++.+...+...+++.|.+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  341 (417)
T d1pv7a_         262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF  341 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            447788888999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchhHHHHH-HhhhhhhhhhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHhhcccc
Q 012500          115 PVPQKTAWLSMF-YMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  174 (462)
Q Consensus       115 ~~~~r~~~~~~~-~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  174 (462)
                      |+++|+++.++. +....+|..++|.++|++.++.||+..|++.+++.++..++..+..++
T Consensus       342 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             CGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            999999999985 566779999999999999999999999999999888887777777643