Citrus Sinensis ID: 012575

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460
MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIIFSSVLQNFTYRVGTKLAPCSSCMRVSGLHYLF
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccEEEEccccccccEEEEEEEccccccccccccccHHHHHHHccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccc
ccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHEHHHHEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccEEEEEccccccEEEEEEEEccccccccEEEcccccHHHHcccccEEEEccccccEEEcccccccccccEEEEEEccEEEccccccccccHccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccHHHHHHHHHHHHHHHHccccEEEEEEccccccEEEcccHccc
mescdcidtqwppdeLLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTlgleecalwmpsrtglnlELSYTLNnqiqigssvpinlpivtdvfnsaqamrlpyncplARIRLLvgryvppdivAVRVpllhlsnfqindwpelpakSYAVMVLMLptdggrkwrdHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLlletdltpeQRVMIETVLKSSNLLTTLVDdvldlsrledgsleldngpfnLQIVLREVIIFSSVLQNFTyrvgtklapcsscmrvsglhylf
mescdcidtqwppDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRadeldremgliltqeetgrhvrMLTHEirstldrhtiLKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVlkssnlltTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIIFSSVLQNFTYRVgtklapcsscmrvsglhylf
MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNllttlvddvldlSRLEDGSLELDNGPFNLQIVLREVIIFSSVLQNFTYRVGTKLAPCSSCMRVSGLHYLF
***CDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILE**************************IHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIIFSSVLQNFTYRVGTKLAPCSSCMRVSGLHYL*
***CDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMG**L**EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLE****PEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIIFSSVLQNFTYRVGTKLAPCSSCMRVSGLHYLF
MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIIFSSVLQNFTYRVGTKLAPCSSCMRVSGLHYLF
**SCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIIFSSVLQNFTYRVGTKLAPCSSCMRVSGL****
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDxxxxxxxxxxxxxxxxxxxxxxxxxIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIIFSSVLQNFTYRVGTKLAPCSSCMRVSGLHYLF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query460 2.2.26 [Sep-21-2011]
Q9ZWL6 738 Ethylene receptor OS=Pass N/A no 0.928 0.578 0.761 0.0
Q9SSY6 740 Ethylene receptor 1 OS=Cu N/A no 0.928 0.577 0.768 0.0
O82436 740 Ethylene receptor 1 OS=Cu N/A no 0.928 0.577 0.768 0.0
Q38846 613 Ethylene response sensor yes no 0.928 0.696 0.779 0.0
Q9XH57 741 Ethylene receptor 2 OS=Pe N/A no 0.926 0.574 0.762 0.0
Q9M7M1 738 Ethylene receptor OS=Prun N/A no 0.926 0.577 0.753 0.0
Q9XH58 740 Ethylene receptor 1 OS=Pe N/A no 0.926 0.575 0.748 0.0
O81122 741 Ethylene receptor OS=Malu N/A no 0.926 0.574 0.748 0.0
P49333 738 Ethylene receptor 1 OS=Ar no no 0.928 0.578 0.749 0.0
O49230 735 Ethylene receptor 1 OS=Br N/A no 0.928 0.580 0.749 0.0
>sp|Q9ZWL6|ETR1_PASED Ethylene receptor OS=Passiflora edulis GN=ETR1 PE=2 SV=1 Back     alignment and function desciption
 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/427 (76%), Positives = 378/427 (88%)

Query: 1   MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGS 60
           MESC+CI+ QWP +ELL++YQYISD  IALAYFSIP+ELIYFV+KSA FPYRWVL+QFG+
Sbjct: 1   MESCNCIEPQWPAEELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGA 60

Query: 61  FIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTREL 120
           FI+LCG TH I+LWTFT+HS+ VA VMTIAK+  A VSC TALMLVHIIPDLLSVKTREL
Sbjct: 61  FIVLCGATHLINLWTFTMHSRTVATVMTIAKVLTAVVSCATALMLVHIIPDLLSVKTREL 120

Query: 121 FLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECA 180
           FLKN+A ELDREMGLI TQEETGRHVRMLTHEIRSTLDRHTIL+TTLVELGRTL LEECA
Sbjct: 121 FLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILRTTLVELGRTLALEECA 180

Query: 181 LWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG 240
           LWMP+RTGL L+LSYTL  Q  +G +VPI LP++  VF++ +A+++  NCP+AR+R L G
Sbjct: 181 LWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSTNRAVKISPNCPVARLRPLAG 240

Query: 241 RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 300
           +YVP ++VAVRVPLLHL+NFQINDWPEL  + YA+MVLMLP+D  R+WR HELEL++VVA
Sbjct: 241 KYVPGEVVAVRVPLLHLNNFQINDWPELSTRRYALMVLMLPSDSARQWRVHELELVEVVA 300

Query: 301 DQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH 360
           DQVAVALSHAAILE+SMRAR+ LMEQNVALD ARREAE AI ARNDF AVMNHEMRT MH
Sbjct: 301 DQVAVALSHAAILEESMRARDLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMH 360

Query: 361 AIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 420
           A+IALSSLL ET+LTPEQR+M+ET+LKSSNLL TL++DVLDLS+LEDGSL+LD+G FNL 
Sbjct: 361 AVIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSKLEDGSLQLDSGTFNLH 420

Query: 421 IVLREVI 427
            V REV+
Sbjct: 421 AVFREVL 427
May act early in the ethylene signal transduction pathway, possibly as an ethylene receptor, or as a regulator of the pathway.
Passiflora edulis (taxid: 78168)
EC: 2EC: .EC: 7EC: .EC: 1EC: 3EC: .EC: 3
>sp|Q9SSY6|ETR1_CUCSA Ethylene receptor 1 OS=Cucumis sativus GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|O82436|ETR1_CUCMN Ethylene receptor 1 OS=Cucumis melo var. cantalupensis GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q38846|ERS1_ARATH Ethylene response sensor 1 OS=Arabidopsis thaliana GN=ERS1 PE=1 SV=1 Back     alignment and function description
>sp|Q9XH57|ETR2_PELHO Ethylene receptor 2 OS=Pelargonium hortorum GN=ETR2 PE=2 SV=1 Back     alignment and function description
>sp|Q9M7M1|ETR1_PRUPE Ethylene receptor OS=Prunus persica GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9XH58|ETR1_PELHO Ethylene receptor 1 OS=Pelargonium hortorum GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|O81122|ETR1_MALDO Ethylene receptor OS=Malus domestica GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|P49333|ETR1_ARATH Ethylene receptor 1 OS=Arabidopsis thaliana GN=ETR1 PE=1 SV=1 Back     alignment and function description
>sp|O49230|ETR1_BRAOL Ethylene receptor 1 OS=Brassica oleracea GN=ETR1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query460
283520948 634 ethylene response sensor 1 [Citrus hybri 0.956 0.694 0.949 0.0
4092526 634 putative ethylene receptor [Citrus sinen 0.956 0.694 0.944 0.0
224068380 636 ethylene receptor 1 [Populus trichocarpa 0.928 0.671 0.854 0.0
225437449 636 PREDICTED: ethylene receptor 2 [Vitis vi 0.928 0.671 0.831 0.0
82471111 632 ERS type ethylene receptor [Ziziphus juj 0.928 0.675 0.854 0.0
237769861 636 ethylene receptor [Dimocarpus longan] gi 0.928 0.671 0.817 0.0
11935116 634 ethylene receptor [Carica papaya] 0.928 0.673 0.845 0.0
163639425 629 ethylene receptor ERS1b [Actinidia delic 0.928 0.678 0.817 0.0
326534419 629 ERS1 [Mangifera indica] 0.928 0.678 0.831 0.0
20135556 605 ethylene receptor [Malus x domestica] 0.928 0.705 0.798 0.0
>gi|283520948|gb|ADB25216.1| ethylene response sensor 1 [Citrus hybrid cultivar] Back     alignment and taxonomy information
 Score =  874 bits (2258), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/454 (94%), Positives = 435/454 (95%), Gaps = 14/454 (3%)

Query: 1   MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGS 60
           MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGS
Sbjct: 1   MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGS 60

Query: 61  FIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTREL 120
           FIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTREL
Sbjct: 61  FIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTREL 120

Query: 121 FLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECA 180
           FLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECA
Sbjct: 121 FLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECA 180

Query: 181 LWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG 240
           LWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG
Sbjct: 181 LWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG 240

Query: 241 RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 300
           RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA
Sbjct: 241 RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 300

Query: 301 DQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH 360
           DQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH
Sbjct: 301 DQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH 360

Query: 361 AIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 420
           AIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ
Sbjct: 361 AIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 420

Query: 421 IVLREVIIFSSVLQNFTYRVGTKLAPCSSCMRVS 454
           IVLREVI                + P +SC ++S
Sbjct: 421 IVLREVIKL--------------IKPVASCKKLS 440

Source: Citrus hybrid cultivar

Species: Citrus hybrid cultivar

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|4092526|gb|AAC99435.1| putative ethylene receptor [Citrus sinensis] Back     alignment and taxonomy information
>gi|224068380|ref|XP_002302732.1| ethylene receptor 1 [Populus trichocarpa] gi|222844458|gb|EEE82005.1| ethylene receptor 1 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225437449|ref|XP_002272649.1| PREDICTED: ethylene receptor 2 [Vitis vinifera] gi|297743925|emb|CBI36895.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|82471111|gb|ABB77561.1| ERS type ethylene receptor [Ziziphus jujuba] Back     alignment and taxonomy information
>gi|237769861|gb|ACL81481.3| ethylene receptor [Dimocarpus longan] gi|264683475|gb|ACY72568.1| ethylene receptor [Dimocarpus longan] Back     alignment and taxonomy information
>gi|11935116|gb|AAG41977.1|AF311942_1 ethylene receptor [Carica papaya] Back     alignment and taxonomy information
>gi|163639425|gb|ABY28263.1| ethylene receptor ERS1b [Actinidia deliciosa] Back     alignment and taxonomy information
>gi|326534419|gb|ADZ76430.1| ERS1 [Mangifera indica] Back     alignment and taxonomy information
>gi|20135556|gb|AAM08931.1| ethylene receptor [Malus x domestica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query460
TAIR|locus:2058500 613 ERS1 "AT2G40940" [Arabidopsis 0.928 0.696 0.761 2.1e-173
UNIPROTKB|Q41341 635 Never-ripe "Ethylene receptor" 0.926 0.670 0.749 1.5e-168
TAIR|locus:2201552 738 ETR1 "ETHYLENE RESPONSE 1" [Ar 0.928 0.578 0.728 6.2e-165
UNIPROTKB|Q41342 754 ETR1 "Ethylene receptor 1" [So 0.923 0.563 0.723 3.5e-162
TAIR|locus:2086208 773 ETR2 "ethylene response 2" [Ar 0.908 0.540 0.420 3.7e-80
TAIR|locus:2084968 766 EIN4 "ETHYLENE INSENSITIVE 4" 0.928 0.557 0.399 6.3e-76
TAIR|locus:2018259 645 ERS2 "ethylene response sensor 0.836 0.596 0.408 8.9e-70
UNIPROTKB|Q9KPC0 927 VC_2453 "Sensor histidine kina 0.245 0.121 0.371 2.7e-11
TIGR_CMR|VC_2453 927 VC_2453 "sensor histidine kina 0.245 0.121 0.371 2.7e-11
UNIPROTKB|P0AEC5 918 barA [Escherichia coli K-12 (t 0.241 0.120 0.375 7.2e-11
TAIR|locus:2058500 ERS1 "AT2G40940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1685 (598.2 bits), Expect = 2.1e-173, P = 2.1e-173
 Identities = 325/427 (76%), Positives = 374/427 (87%)

Query:     1 MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGS 60
             MESCDC +T    D+LLV+YQYISD LIALAYFSIP+ELIYFVQKSAFFPY+WVLMQFG+
Sbjct:     1 MESCDCFETHVNQDDLLVKYQYISDALIALAYFSIPLELIYFVQKSAFFPYKWVLMQFGA 60

Query:    61 FIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTREL 120
             FIILCG THFI+LW F +HSKAVA+VMTIAK++CA VSC TALMLVHIIPDLLSVK REL
Sbjct:    61 FIILCGATHFINLWMFFMHSKAVAIVMTIAKVSCAVVSCATALMLVHIIPDLLSVKNREL 120

Query:   121 FLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECA 180
             FLK +ADELDREMGLILTQEETGRHVRMLTH IR TLDRHTIL+TTLVELG+TL LEECA
Sbjct:   121 FLKKKADELDREMGLILTQEETGRHVRMLTHGIRRTLDRHTILRTTLVELGKTLCLEECA 180

Query:   181 LWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG 240
             LWMPS++GL L+LS+TL+++IQ+GSSVPINLPI+ ++FNSAQAM +P++CPLA+I   VG
Sbjct:   181 LWMPSQSGLYLQLSHTLSHKIQVGSSVPINLPIINELFNSAQAMHIPHSCPLAKIGPPVG 240

Query:   241 RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 300
             RY PP++V+VRVPLLHLSNFQ +DW +L  K YA+MVL+LPTDG RKWRDHELEL++ VA
Sbjct:   241 RYSPPEVVSVRVPLLHLSNFQGSDWSDLSGKGYAIMVLILPTDGARKWRDHELELVENVA 300

Query:   301 DQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH 360
             DQVAVALSHAAILE+SM AR+QLMEQN ALD AR+EAE A+HARNDF AVMNHEMRT MH
Sbjct:   301 DQVAVALSHAAILEESMHARDQLMEQNFALDKARQEAEMAVHARNDFLAVMNHEMRTPMH 360

Query:   361 AIIALSSLLLETDLTPEQRVMIETVLKSSNXXXXXXXXXXXXSRLEDGSLELDNGPFNLQ 420
             AII+LSSLLLET+L+PEQRVMIET+LKSSN            SRLEDGSL L+N PF+LQ
Sbjct:   361 AIISLSSLLLETELSPEQRVMIETILKSSNLVATLISDVLDLSRLEDGSLLLENEPFSLQ 420

Query:   421 IVLREVI 427
              +  EVI
Sbjct:   421 AIFEEVI 427
GO:0004673 "protein histidine kinase activity" evidence=ISS;TAS
GO:0007165 "signal transduction" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0016310 "phosphorylation" evidence=IEA
GO:0018106 "peptidyl-histidine phosphorylation" evidence=IEA
GO:0051740 "ethylene binding" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0004872 "receptor activity" evidence=TAS
GO:0010105 "negative regulation of ethylene mediated signaling pathway" evidence=TAS
UNIPROTKB|Q41341 Never-ripe "Ethylene receptor" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
TAIR|locus:2201552 ETR1 "ETHYLENE RESPONSE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q41342 ETR1 "Ethylene receptor 1" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
TAIR|locus:2086208 ETR2 "ethylene response 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084968 EIN4 "ETHYLENE INSENSITIVE 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018259 ERS2 "ethylene response sensor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KPC0 VC_2453 "Sensor histidine kinase/response regulator" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2453 VC_2453 "sensor histidine kinase/response regulator" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|P0AEC5 barA [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q38846ERS1_ARATH2, ., 7, ., 1, 3, ., 30.77980.92820.6965yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.130.963
3rd Layer2.7.13.30.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
ETR1
ethylene receptor 1 (636 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.II.248.1
extra response regulator (119 aa)
  •     0.435
fgenesh4_pm.C_LG_IX000289
extra response regulator (129 aa)
  •     0.430
fgenesh4_pg.C_LG_VI000330
type-a response regulator (233 aa)
  •     0.426
gw1.4987.1.1
annotation not avaliable (105 aa)
• •     0.425
ARR3
type-a response regulator (193 aa)
  •     0.413
eugene3.121890001
hypothetical protein (193 aa)
  •     0.407

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query460
TIGR02956 968 TIGR02956, TMAO_torS, TMAO reductase sytem sensor 1e-18
PRK11107 919 PRK11107, PRK11107, hybrid sensory histidine kinas 3e-18
pfam01590143 pfam01590, GAF, GAF domain 8e-17
pfam0051266 pfam00512, HisKA, His Kinase A (phospho-acceptor) 1e-14
smart0038866 smart00388, HisKA, His Kinase A (phosphoacceptor) 4e-14
PRK15347 921 PRK15347, PRK15347, two component system sensor ki 3e-12
PRK11466 914 PRK11466, PRK11466, hybrid sensory histidine kinas 4e-11
COG0642 336 COG0642, BaeS, Signal transduction histidine kinas 2e-10
PRK11091 779 PRK11091, PRK11091, aerobic respiration control se 6e-10
cd0008265 cd00082, HisKA, Histidine Kinase A (dimerization/p 2e-09
smart00065149 smart00065, GAF, Domain present in phytochromes an 1e-08
PRK09959 1197 PRK09959, PRK09959, hybrid sensory histidine kinas 2e-06
COG2205 890 COG2205, KdpD, Osmosensitive K+ channel histidine 3e-06
PRK10618 894 PRK10618, PRK10618, phosphotransfer intermediate p 6e-06
PRK10841 924 PRK10841, PRK10841, hybrid sensory kinase in two-c 2e-05
TIGR02966 333 TIGR02966, phoR_proteo, phosphate regulon sensor k 3e-05
pfam13492129 pfam13492, GAF_3, GAF domain 1e-04
PRK11100 475 PRK11100, PRK11100, sensory histidine kinase CreC; 0.001
TIGR01386457 TIGR01386, cztS_silS_copS, heavy metal sensor kina 0.003
COG2203175 COG2203, FhlA, FOG: GAF domain [Signal transductio 0.004
>gnl|CDD|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS Back     alignment and domain information 
 Score = 88.7 bits (220), Expect = 1e-18
 Identities = 52/159 (32%), Positives = 84/159 (52%), Gaps = 12/159 (7%)

Query: 289 RDHELELIDVVADQVAVALS---HAAILEDSMRARNQ-LMEQNVALDS-------ARREA 337
           RD     + + AD+  VA     H   LE  +  R Q L E N  L++       AR EA
Sbjct: 398 RDTAAHNLKLQADERQVAQELQEHKESLEQLVAQRTQELAETNERLNAEVKNHAKARAEA 457

Query: 338 EKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVD 397
           E+A  A++ F A M+HE+RT ++ I+    LL +T LT +Q+  ++ + +S   L  +++
Sbjct: 458 EEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILN 517

Query: 398 DVLDLSRLEDGSLELDNGPFNLQIVLREVI-IFSSVLQN 435
           D+LD S++E G L +   PF+L  +L +V  +  S  Q 
Sbjct: 518 DILDYSKIEAGHLSISPRPFDLNALLDDVHHLMVSRAQL 556

This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072) [Signal transduction, Two-component systems]. Length = 968
>gnl|CDD|236848 PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>gnl|CDD|216590 pfam01590, GAF, GAF domain Back     alignment and domain information
>gnl|CDD|215963 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain Back     alignment and domain information
>gnl|CDD|214644 smart00388, HisKA, His Kinase A (phosphoacceptor) domain Back     alignment and domain information
>gnl|CDD|237951 PRK15347, PRK15347, two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>gnl|CDD|236914 PRK11466, PRK11466, hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>gnl|CDD|223715 COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>gnl|CDD|119399 cd00082, HisKA, Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase Back     alignment and domain information
>gnl|CDD|214500 smart00065, GAF, Domain present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>gnl|CDD|182169 PRK09959, PRK09959, hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>gnl|CDD|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|236726 PRK10618, PRK10618, phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>gnl|CDD|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>gnl|CDD|234074 TIGR02966, phoR_proteo, phosphate regulon sensor kinase PhoR Back     alignment and domain information
>gnl|CDD|222174 pfam13492, GAF_3, GAF domain Back     alignment and domain information
>gnl|CDD|236846 PRK11100, PRK11100, sensory histidine kinase CreC; Provisional Back     alignment and domain information
>gnl|CDD|233391 TIGR01386, cztS_silS_copS, heavy metal sensor kinase Back     alignment and domain information
>gnl|CDD|225113 COG2203, FhlA, FOG: GAF domain [Signal transduction mechanisms] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 460
COG2205 890 KdpD Osmosensitive K+ channel histidine kinase [Si 99.96
PRK10490 895 sensor protein KdpD; Provisional 99.9
KOG0519 786 consensus Sensory transduction histidine kinase [S 99.83
PRK13837 828 two-component VirA-like sensor kinase; Provisional 99.75
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 99.73
PRK11091 779 aerobic respiration control sensor protein ArcB; P 99.69
COG4251 750 Bacteriophytochrome (light-regulated signal transd 99.63
PF0051268 HisKA: His Kinase A (phospho-acceptor) domain; Int 99.6
PRK10618 894 phosphotransfer intermediate protein in two-compon 99.57
PRK10841 924 hybrid sensory kinase in two-component regulatory 99.57
TIGR02956 968 TMAO_torS TMAO reductase sytem sensor TorS. This p 99.56
PRK11107 919 hybrid sensory histidine kinase BarA; Provisional 99.53
PRK15347 921 two component system sensor kinase SsrA; Provision 99.52
PRK11466 914 hybrid sensory histidine kinase TorS; Provisional 99.47
PRK09303 380 adaptive-response sensory kinase; Validated 99.45
COG5002 459 VicK Signal transduction histidine kinase [Signal 99.38
PRK15429 686 formate hydrogenlyase transcriptional activator Fh 99.31
PRK11006 430 phoR phosphate regulon sensor protein; Provisional 99.28
PRK09959 1197 hybrid sensory histidine kinase in two-component r 99.27
COG3852 363 NtrB Signal transduction histidine kinase, nitroge 99.15
PRK11061 748 fused phosphoenolpyruvate-protein phosphotransfera 99.12
PRK10604 433 sensor protein RstB; Provisional 99.05
smart0038866 HisKA His Kinase A (phosphoacceptor) domain. Dimer 99.05
PRK10364 457 sensor protein ZraS; Provisional 99.0
PRK10815 485 sensor protein PhoQ; Provisional 98.99
TIGR03785 703 marine_sort_HK proteobacterial dedicated sortase s 98.97
PRK10337449 sensor protein QseC; Provisional 98.91
TIGR01817 534 nifA Nif-specific regulatory protein. This model r 98.9
PF13492129 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_ 98.9
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 98.86
TIGR02966 333 phoR_proteo phosphate regulon sensor kinase PhoR. 98.86
PRK11644495 sensory histidine kinase UhpB; Provisional 98.86
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 98.85
PRK09835 482 sensor kinase CusS; Provisional 98.83
PRK11073 348 glnL nitrogen regulation protein NR(II); Provision 98.82
PRK10549 466 signal transduction histidine-protein kinase BaeS; 98.8
PF01590154 GAF: GAF domain; InterPro: IPR003018 This domain i 98.73
PRK10755 356 sensor protein BasS/PmrB; Provisional 98.73
PRK11100 475 sensory histidine kinase CreC; Provisional 98.73
cd0008265 HisKA Histidine Kinase A (dimerization/phosphoacce 98.7
PRK09467435 envZ osmolarity sensor protein; Provisional 98.7
PRK09470 461 cpxA two-component sensor protein; Provisional 98.69
COG4191 603 Signal transduction histidine kinase regulating C4 98.65
COG5000 712 NtrY Signal transduction histidine kinase involved 98.64
PRK15429 686 formate hydrogenlyase transcriptional activator Fh 98.64
COG4192 673 Signal transduction histidine kinase regulating ph 98.56
PRK05022 509 anaerobic nitric oxide reductase transcription reg 98.53
COG3850574 NarQ Signal transduction histidine kinase, nitrate 98.49
smart00065149 GAF Domain present in phytochromes and cGMP-specif 98.48
PRK11360 607 sensory histidine kinase AtoS; Provisional 98.48
PRK13560807 hypothetical protein; Provisional 98.44
TIGR02938 494 nifL_nitrog nitrogen fixation negative regulator N 98.42
COG3605 756 PtsP Signal transduction protein containing GAF an 98.37
PF13185148 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_ 98.31
PRK13557 540 histidine kinase; Provisional 98.24
PRK13559361 hypothetical protein; Provisional 98.13
COG2203175 FhlA FOG: GAF domain [Signal transduction mechanis 97.87
COG0642 336 BaeS Signal transduction histidine kinase [Signal 97.86
COG3604 550 FhlA Transcriptional regulator containing GAF, AAA 97.78
PRK13558665 bacterio-opsin activator; Provisional 97.64
KOG0519 786 consensus Sensory transduction histidine kinase [S 97.35
COG3851497 UhpB Signal transduction histidine kinase, glucose 96.88
PRK10935565 nitrate/nitrite sensor protein NarQ; Provisional 96.83
PRK11086542 sensory histidine kinase DcuS; Provisional 96.4
PF04340225 DUF484: Protein of unknown function, DUF484; Inter 96.39
PF11849174 DUF3369: Domain of unknown function (DUF3369); Int 95.51
COG1956163 GAF domain-containing protein [Signal transduction 94.71
PRK10963223 hypothetical protein; Provisional 94.17
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 93.22
PF1468962 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do 90.62
PF0756876 HisKA_2: Histidine kinase; InterPro: IPR011495 Two 89.81
PF0749566 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi 87.02
COG3159218 Uncharacterized protein conserved in bacteria [Fun 86.34
COG5385214 Uncharacterized protein conserved in bacteria [Fun 80.32
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=99.96  E-value=7.7e-27  Score=237.57  Aligned_cols=346  Identities=17%  Similarity=0.216  Sum_probs=238.1

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhcCCCchHHHHHHHHHHHH----------------HHHHHHHHHHHhhccchhHHHHHH
Q 012575           24 SDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFII----------------LCGLTHFISLWTFTVHSKAVAVVM   87 (460)
Q Consensus        24 ~d~~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~fi~----------------~cg~~hl~~~~~~~~~~~~~~~~~   87 (460)
                      .|.++++.+.++.+.+..+..+.-+...--++++.|.+++                +..+++||.-      +...+-+.
T Consensus       397 ~~~l~a~~~~a~~t~i~~~l~~~~~~~ni~mvFllgVlv~av~~g~~pa~~aailsvl~fNyFF~e------PryTf~v~  470 (890)
T COG2205         397 RDYLVAILICALATAIAIQLDKFFDLANIVMLFLLGVLVVAVLTGRWPAVLAALLSVLVFNYFFTE------PRYTFAVS  470 (890)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhheecC------CceEEEEe
Confidence            6788888888888777666655555444444444444333                2222333222      22222233


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Q 012575           88 TIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTL  167 (460)
Q Consensus        88 ~~~k~~ta~~s~~~a~~l~~~~p~~l~~~~~~~~l~~~~~~l~~e~~~l~~~~e~~~~l~~lt~~I~~sld~~~il~~~~  167 (460)
                      ..-+++|..|+++.|+....                 .+.+.+++.+..++++++.+.+.+.++++..+.+.++++.++.
T Consensus       471 d~~y~vTf~vml~vai~t~~-----------------Lt~~vr~Qa~~ar~r~~rT~~Lye~s~~L~~a~t~~~vl~~~~  533 (890)
T COG2205         471 DPQYLVTFAVMLAVALLTGN-----------------LTARVREQARAARRREQRTELLYEFSKKLAGARTREDILAAAG  533 (890)
T ss_pred             cCchHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            33344444444444433322                 3477788888889999999999999999999999999999999


Q ss_pred             HHhhhhcCCceeEEeccCCCCCceEEEEeecCCccCCccccc-CChhHHHHhhccCceeecCCCchhhhhhcccCCCCCc
Q 012575          168 VELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPI-NLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPD  246 (460)
Q Consensus       168 ~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  246 (460)
                      ..+.++++ .++.++++++++..  ......+    +  .+. +......++.++++.-.           .++.+  +.
T Consensus       534 ~qi~~~~~-~~v~i~l~~~~~~~--~~~~~~~----~--l~~~d~aaa~W~~~~~~~AG~-----------gTdTl--pg  591 (890)
T COG2205         534 QQIASLLN-QRVVILLPDDNGKL--QPLGNPD----G--LSADDRAAAQWAFENGKPAGA-----------GTDTL--PG  591 (890)
T ss_pred             HHHHHHhC-CceEEEEecCCccc--ccccCCc----c--ccHHHHHHhhchhhCCCcccc-----------CCCCC--CC
Confidence            99999998 56667777776543  1111100    0  111 11112222222221100           00111  11


Q ss_pred             ceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012575          247 IVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQ  326 (460)
Q Consensus       247 ~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~~~~~~~~e~~ll~~ia~~~a~ai~~a~l~~~~~~~~~~l~~~  326 (460)
                      ...              .|.++..++-..||+++.++......+++..++..++.|+|+|+++..+.++.++.+-+    
T Consensus       592 ~~~--------------~~lPl~~~~~~~gvlgv~~~~~~ll~p~~~rlL~a~~~q~AlAler~~L~~~~~~a~l~----  653 (890)
T COG2205         592 AKY--------------LYLPLKSGGKVLGVLGVEPGLSPLLAPEQRRLLDAVLTQIALALERVTLAEEAEQARLA----  653 (890)
T ss_pred             Cce--------------eEeecccCCceEEEEEecCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            111              23446666777899999888555688999999999999999999999998775544322    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhcC--CCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012575          327 NVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET--DLTPE-QRVMIETVLKSSNLLTTLVDDVLDLS  403 (460)
Q Consensus       327 ~~~L~~~~~~l~~~~~~k~~f~~~iSHELRtPLt~I~g~~~lL~~~--~~~~~-~~~~l~~I~~~~~rl~~LI~~LL~~s  403 (460)
                                 .+.++.|+.|++++|||||||||+|.|.++.|...  .++++ +.+.+..|.+++++|.++|+||||++
T Consensus       654 -----------~e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmT  722 (890)
T COG2205         654 -----------AERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMT  722 (890)
T ss_pred             -----------HHHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence                       23448899999999999999999999999999854  45555 67899999999999999999999999


Q ss_pred             hhhcCCcccccccccHHHHHHHHHHHHhhhc-ccceEeecC
Q 012575          404 RLEDGSLELDNGPFNLQIVLREVIIFSSVLQ-NFTYRVGTK  443 (460)
Q Consensus       404 r~e~g~~~l~~~~~~L~~li~~v~~~~~~~a-~~~~~l~~~  443 (460)
                      |+++|.++++.++..+.++|.+++..++... +..+.++.+
T Consensus       723 Ri~sG~~~l~~~~~~veEvVg~Al~r~~k~~~~~~i~v~~~  763 (890)
T COG2205         723 RLQSGGVNLKLDWVLVEEVVGEALQRLRKRFTGHKIVVSVP  763 (890)
T ss_pred             HHhcCCcccccchhhHHHHHHHHHHHhhhhcCCceEEEecC
Confidence            9999999999999999999999998887775 555555544

>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>smart00388 HisKA His Kinase A (phosphoacceptor) domain Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms] Back     alignment and domain information
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>PRK13559 hypothetical protein; Provisional Back     alignment and domain information
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms] Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PRK13558 bacterio-opsin activator; Provisional Back     alignment and domain information
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function Back     alignment and domain information
>PF11849 DUF3369: Domain of unknown function (DUF3369); InterPro: IPR021800 This domain is functionally uncharacterised Back     alignment and domain information
>COG1956 GAF domain-containing protein [Signal transduction mechanisms] Back     alignment and domain information
>PRK10963 hypothetical protein; Provisional Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B Back     alignment and domain information
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators Back     alignment and domain information
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query460
4ew8_A 268 Sensor protein DIVL; signal transduction, two-comp 5e-26
3p01_A184 Two-component response regulator; PSI-2, midwest c 2e-18
2c2a_A 258 Sensor histidine kinase; phosphotransfer, PHOQ, se 4e-18
3o5y_A165 Sensor protein; GAF domain, histidine, kinase, PSI 8e-09
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 2e-08
2qyb_A181 Membrane protein, putative; GAF domain, domain of 5e-06
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 6e-06
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 7e-06
3jz3_A 222 Sensor protein QSEC; helix-turn-helix, kinase doma 8e-06
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 9e-06
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 8e-05
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Length = 268 Back     alignment and structure
 Score =  105 bits (265), Expect = 5e-26
 Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 3/116 (2%)

Query: 313 LEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET 372
               +   + +++   AL        +A   + DF   +++E+RT +  II  S LL   
Sbjct: 11  SSGLVPRGSHMLQS--ALADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERA 68

Query: 373 D-LTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVI 427
           D ++   R  +  V  ++  L   +DDVLD+++++ G + L+     +  +L    
Sbjct: 69  DGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEMALEIEDIRVSDLLLNAQ 124
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP} Length = 184 Back     alignment and structure
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Length = 258 Back     alignment and structure
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans} Length = 165 Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Length = 177 Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Length = 181 Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Length = 171 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Length = 222 Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Length = 181 Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Length = 171 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query460
3p01_A184 Two-component response regulator; PSI-2, midwest c 99.58
4glq_A171 Methyl-accepting chemotaxis protein; chromophore, 99.52
2c2a_A 258 Sensor histidine kinase; phosphotransfer, PHOQ, se 99.51
2zmf_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 99.43
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 99.43
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 99.41
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 99.41
2e4s_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 99.4
4ew8_A 268 Sensor protein DIVL; signal transduction, two-comp 99.4
3o5y_A165 Sensor protein; GAF domain, histidine, kinase, PSI 99.31
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 99.3
3oov_A169 Methyl-accepting chemotaxis protein, putative; str 99.28
2lb5_A208 Sensor histidine kinase; PCB, transferase, GAF dom 99.28
1gkz_A 388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 99.14
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 99.14
2qyb_A181 Membrane protein, putative; GAF domain, domain of 99.13
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 99.12
2ool_A337 Sensor protein; bacteriophytochrome, photoconversi 99.11
3nhq_A505 Bacteriophytochrome; photoreceptor, PAS, signaling 99.09
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 99.09
2vjw_A149 GAF-B, GAF family protein; histidine kinase, hypox 99.07
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 99.06
3ibj_A 691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 99.05
3zq5_A520 Phytochrome-like protein CPH1; arginine finger, ta 99.05
4e04_A327 Bacteriophytochrome (light-regulated signal trans 99.05
3s7o_A343 Bacteriophytochrome; biliverdin, PAS, GAF, photore 99.03
2w3g_A153 DOSS, two component sensor histidine kinase DEVS ( 99.01
3mmh_A167 FRMSR, methionine-R-sulfoxide reductase; oxidoredu 99.01
3hcy_A151 Putative two-component sensor histidine kinase PR; 99.0
4fpp_A247 Phosphotransferase; four helix bundle, bergerat fo 98.99
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 98.98
3dba_A180 CONE CGMP-specific 3',5'-cyclic phosphodiesterase 98.98
3d36_A 244 Sporulation kinase B; GHKL ATPase, four helix bund 98.97
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 98.95
3ibj_A 691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 98.95
3cit_A160 Sensor histidine kinase; MEGA: 3.30.450.40, struct 98.93
2k2n_A172 Sensor protein, SYB-CPH1(GAF); phytochrome, GAF do 98.87
2btz_A 394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 98.86
3zcc_A114 HAMP, osmolarity sensor protein ENVZ; signaling pr 98.83
1vhm_A195 Protein YEBR; structural genomics, unknown functio 98.8
2q8g_A 407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 98.78
2e0a_A 394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 98.76
4eho_A 635 Bacteriophytochrome, PAS/PAC sensor; photoreceptor 98.65
3eea_A162 GAF domain/HD domain protein; structural genomics, 98.62
1y8o_A 419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 98.56
3rfb_A171 Putative uncharacterized protein; FRMSR, GAF, oxid 98.56
1f5m_A180 GAF; CGMP binding, signaling protein; 1.90A {Sacch 98.55
3ksh_A160 Putative uncharacterized protein; FRMSR, free-Met- 98.5
3bjc_A 878 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 98.43
3zrx_A115 AF1503 protein, osmolarity sensor protein ENVZ; si 98.4
3bjc_A 878 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 98.35
3ehh_A218 Sensor kinase (YOCF protein); four-helix bundle, G 97.87
1b3q_A 379 Protein (chemotaxis protein CHEA); histine kinase, 97.42
3e98_A252 GAF domain of unknown function; structural genomic 96.0
4eu0_A298 PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A 94.88
4a2l_A795 BT_4663, two-component system sensor histidine kin 93.03
3ott_A758 Two-component system sensor histidine kinase; beta 92.84
3v9f_A781 Two-component system sensor histidine kinase/RESP 91.52
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP} Back     alignment and structure
Probab=99.58  E-value=3.5e-14  Score=125.94  Aligned_cols=172  Identities=15%  Similarity=0.136  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecCCccCC
Q 012575          125 RADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIG  204 (460)
Q Consensus       125 ~~~~l~~e~~~l~~~~e~~~~l~~lt~~I~~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  204 (460)
                      ...++++..+++++++++.+.++++++.+++++|++++++.+++.+.+.+++|+|.+|+.+++. .......+..+....
T Consensus        11 ~~~~l~~~~~~l~~~~~~~~~L~~is~~l~~~~dl~~il~~i~~~l~~~l~~d~~~i~l~~~~~-~~~~~~~~~~~~~~~   89 (184)
T 3p01_A           11 TYDLLKQRTEELRRANAQMSLLTVLVQVTQASNSLEAILTPIATAFAESFAVNACILQMLEGQT-LSTIQGFYSQQGTVN   89 (184)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHTCSEEEEEEEETTE-EEEEEEEEESSSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCc-eeeeeeeccccCccC
Confidence            4567777778888899999999999999999999999999999999999999999999995443 222223233222122


Q ss_pred             cccccCChhHHHHhhccCceeecCCCchhhhhhcccCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCC
Q 012575          205 SSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDG  284 (460)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~  284 (460)
                      ..++ ..+.+..++.+++++.+++...+..+.........+..+.+.+||..              ++..+|++.+.+..
T Consensus        90 ~~~~-~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vPL~~--------------~~~~~GvL~l~~~~  154 (184)
T 3p01_A           90 NWLN-QDPLTNEAIATGQIQVAANIAKDPKLASISQYQDNGIQSHVVIPITY--------------RNEMLGVLSLQWQQ  154 (184)
T ss_dssp             CCGG-GCHHHHHHHHHCSCEEESCGGGCHHHHTCHHHHHHTCCEEEEEEEEE--------------TTEEEEEEEEEESS
T ss_pred             cccC-CCcHHHHHHhhCCeEEEeccccCccccchhHHHHhCccEEEEEEEEE--------------CCEEEEEEEeCcCC
Confidence            2244 47888999999999998877665544311000012446677778643              34458888888788


Q ss_pred             CCcccccHHHHHHHHHHHHHHHHHHHHH
Q 012575          285 GRKWRDHELELIDVVADQVAVALSHAAI  312 (460)
Q Consensus       285 ~~~~~~~e~~ll~~ia~~~a~ai~~a~l  312 (460)
                      ++.|+++|.+++..+|+|+|+||+|++.
T Consensus       155 ~~~f~~~d~~ll~~lA~q~aiAi~nAr~  182 (184)
T 3p01_A          155 PISLREDELTLIHLSAQLVAIALTSSRC  182 (184)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8999999999999999999999999864
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A* Back     alignment and structure
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Back     alignment and structure
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens} Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Back     alignment and structure
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Back     alignment and structure
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans} Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Back     alignment and structure
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} Back     alignment and structure
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A* Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Back     alignment and structure
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Back     alignment and structure
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9 Back     alignment and structure
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A* Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Back     alignment and structure
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Back     alignment and structure
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A* Back     alignment and structure
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris} Back     alignment and structure
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A* Back     alignment and structure
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A* Back     alignment and structure
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0 Back     alignment and structure
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Back     alignment and structure
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus} Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Back     alignment and structure
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Back     alignment and structure
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV} Back     alignment and structure
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A* Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Back     alignment and structure
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A Back     alignment and structure
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1 Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Back     alignment and structure
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens} Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Back     alignment and structure
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae} Back     alignment and structure
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A* Back     alignment and structure
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A* Back     alignment and structure
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Back     alignment and structure
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A Back     alignment and structure
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Back     alignment and structure
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* Back     alignment and structure
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A Back     alignment and structure
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa} Back     alignment and structure
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A* Back     alignment and structure
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* Back     alignment and structure
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 460
d2c2aa189 a.30.2.1 (A:232-320) Sensor histidine kinase TM085 4e-08
d1joya_67 a.30.2.1 (A:) EnvZ histidine kinase {Escherichia c 5e-07
d1mc0a2154 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phos 3e-04
d2k2na1170 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synec 0.001
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 89 Back     information, alignment and structure

class: All alpha proteins
fold: ROP-like
superfamily: Homodimeric domain of signal transducing histidine kinase
family: Homodimeric domain of signal transducing histidine kinase
domain: Sensor histidine kinase TM0853
species: Thermotoga maritima [TaxId: 2336]

 Score = 48.5 bits (115), Expect = 4e-08
 Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 326 QNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPE---QRVMI 382
           +NV         ++    + +F A ++HE+RT + AI A +  +  +    +    +  +
Sbjct: 2   ENVTESKELERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFL 61

Query: 383 ETVLKSSNLLTTLVDDVLDLSRLEDGSL 410
           E ++  SN L  L++++LD SRLE  SL
Sbjct: 62  EVIIDQSNHLENLLNELLDFSRLERKSL 89
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} Length = 67 Back     information, alignment and structure
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Length = 154 Back     information, alignment and structure
>d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]} Length = 170 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query460
d2c2aa189 Sensor histidine kinase TM0853 {Thermotoga maritim 99.73
d1joya_67 EnvZ histidine kinase {Escherichia coli [TaxId: 56 99.47
d1mc0a1187 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 99.4
d1mc0a2154 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 99.26
d2k2na1170 Sensor protein CYB2465 {Synechococcus sp. [TaxId: 99.12
d2o9ca1187 Bacteriophytochrome BphP {Deinococcus radiodurans 98.98
d2oola1194 Sensor protein PhyB2 {Rhodopseudomonas palustris [ 98.96
d3c2wa1192 Bacteriophytochrome BphP {Pseudomonas aeruginosa [ 98.89
d2veaa1196 Phytochrome-like protein Cph1 {Synechocystis sp. p 98.81
d1vhma_159 Hypothetical protein YebR {Escherichia coli [TaxId 98.81
d1f5ma_176 Hypothetical protein ykl069wp {Baker's yeast (Sacc 98.24
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 97.48
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: All alpha proteins
fold: ROP-like
superfamily: Homodimeric domain of signal transducing histidine kinase
family: Homodimeric domain of signal transducing histidine kinase
domain: Sensor histidine kinase TM0853
species: Thermotoga maritima [TaxId: 2336]

Probab=99.73  E-value=5.9e-18  Score=129.79  Aligned_cols=76  Identities=29%  Similarity=0.441  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc
Q 012575          335 REAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET---DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSL  410 (460)
Q Consensus       335 ~~l~~~~~~k~~f~~~iSHELRtPLt~I~g~~~lL~~~---~~~~~~~~~l~~I~~~~~rl~~LI~~LL~~sr~e~g~~  410 (460)
                      ++++++++.|++|++++||||||||++|.|++++|.+.   ..+++.+++++.|.+++++|.++|+++|+|||+|+|++
T Consensus        11 e~l~~~~~~k~~f~~~vsHeLRtPL~~I~~~~~~L~~~~~~~~~~~~~~~l~~i~~~~~rl~~li~~lLd~srle~g~l   89 (89)
T d2c2aa1          11 ERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSL   89 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            34567788999999999999999999999999999763   34566789999999999999999999999999999874
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]} Back     information, alignment and structure
>d2o9ca1 d.110.2.1 (A:135-321) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2oola1 d.110.2.1 (A:140-333) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]} Back     information, alignment and structure
>d3c2wa1 d.110.2.1 (A:118-309) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2veaa1 d.110.2.1 (A:131-326) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]} Back     information, alignment and structure
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure