Citrus Sinensis ID: 012611

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460
MSGPLDRFARPCFEGSCSNDERRERKSDFDNSEDDRKTRMRNLKKKAIKASSKLKPSFKKKSRRKSVERVPVSIEDVRNVEELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWADMIQWRKDFGTDTILEDFEFSEVNEVLQYYPQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGVGFKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGSCNCADQGGCMRSDKGPWKDPNILQIVLSGEALRSRQIVTVLNNEGRVIARDKPRFLMIKSGDTSAAESGSEVEDIASPEPTGSYLVPRLTPVCEEPRVDVMATCAGEFSEYDEYVPVVDKAVDVGCKNQVSPQKPCYPSKG
ccccccccccccccccccHHHHHHccccccccccHHHccHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccccccccEEEEEEcccccccHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHccccccEEEEEcccccccccccHHHHHHHHHHHHHHHccccHHcccEEEEEcccHHHHHHHHHccccccccccEEEEEccccHHHHHccccccccccccccccccccccccccccccccccccHHHHHHcccccccccEEEEEcccccEEcccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHcccccHHHHHHHcccEEEEEcccccEEEEEcHHHccHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccEEEEEEcccccHHHccHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHccHHHHccEEEcccccHHHHcccccccccEHHHcccEcccHHHccccccccccccHHHHHHHHccccccccEEEEEccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccEEcccccccccccccccccc
msgpldrfarpcfegscsnderrerksdfdnsedDRKTRMRNLKKKAIKASSklkpsfkkksrrksvervpvsiedvrnvEELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWADMIQWRKdfgtdtiledfefsEVNEVLQyypqgyhgmdkegrpvyierlgkvdpnkltqvttMDRYLRYHVQEFEKCfaikfpacsiaakrhidssttildvqgvgfKSLTKSARELIMQVQkidsdnypetLCRMFIINAGQGFKLLWNSVrrfldpkttskiHVLGNKYQSKLLEIidaselpeflggscncadqggcmrsdkgpwkdpniLQIVLSGEALRSRQIVTVLNnegrviardkprflmiksgdtsaaesgsevediaspeptgsylvprltpvceeprvdvmatcagefseydeyvpvvdkavdvgcknqvspqkpcypskg
msgpldrfarpcfegscsnderrerksdfdnseddrktrmRNLKkkaikassklkpsfkkksrrksvervpvsiedvrnveelhavDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWADMIQWRKDFGTDTILEDFEFSEVNEVLQYYpqgyhgmdKEGRPVYIERlgkvdpnkltqvtTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGVGFKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGSCNCADQGGCMRSDKGPWKDPNILQIVLsgealrsrqivtvlnnegrviardkprflmIKSGdtsaaesgsevediaspeptgsylvprltpvceepRVDVMATCAGEFSEYDEYVPVVDKAVDVGcknqvspqkpcypskg
MSGPLDRFARPCFEGSCSNDERRERKSDFDNSEDDRKTRMRNlkkkaikassklkpsfkkksrrksvervpvsIEDVRNVEELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWADMIQWRKDFGTDTILEDFEFSEVNEVLQYYPQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGVGFKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGSCNCADQGGCMRSDKGPWKDPNILQIVLSGEALRSRQIVTVLNNEGRVIARDKPRFLMIKSGDTSAAESGSEVEDIASPEPTGSYLVPRLTPVCEEPRVDVMATCAGEFSEYDEYVPVVDKAVDVGCKNQVSPQKPCYPSKG
************************************************************************SIEDVRNVEELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWADMIQWRKDFGTDTILEDFEFSEVNEVLQYYPQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGVGFKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGSCNCADQGGCMRSDKGPWKDPNILQIVLSGEALRSRQIVTVLNNEGRVIARDKPRFLMI*************************YLVPRLTPVCEEPRVDVMATCAGEFSEYDEYVPVVDKAVDVGCK**************
********************************************************************************EELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWADMIQWRKDFGTDTILEDFEFSEVNEVLQYYPQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGVGFKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGSCNCADQGGCMRSDKGPWKDPNILQIVLSGEALRSR***************D*PRFLMIKSGDTSAA*************************V**************EFSEYDEYVPVVDKAVDV*****************
MSGPLDRFARPCFEGSC***********************RNLK*************************VPVSIEDVRNVEELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWADMIQWRKDFGTDTILEDFEFSEVNEVLQYYPQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGVGFKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGSCNCADQGGCMRSDKGPWKDPNILQIVLSGEALRSRQIVTVLNNEGRVIARDKPRFLMIKSG****************PEPTGSYLVPRLTPVCEEPRVDVMATCAGEFSEYDEYVPVVDKAVDVGCKNQ************
*******************************SE*DR*TRMRNLKKKAIKASSKLKPSFKKKSRRKSVERVPVSIEDVRNVEELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWADMIQWRKDFGTDTILEDFEFSEVNEVLQYYPQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGVGFKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGSCNCADQGGCMRSDKGPWKDPNILQIVLSGEALRSRQIVTVLNNEGRVIARD************************************RLTP***********TCAGEFSEYDEYVPVVDKAVDVGCK**************
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MSGPLDRFARPCFEGSCSNDERRERKSDFDNSEDDRKTRMRNLKKKAIKASSKLKPSFKKKSRRKSVERVPVSIEDVRNVEELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWADMIQWRKDFGTDTILEDFEFSEVNEVLQYYPQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGVGFKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGSCNCADQGGCMRSDKGPWKDPNILQIVLSGEALRSRQIVTVLNNEGRVIARDKPRFLMIKSGDTSAAESGSEVEDIASPEPTGSYLVPRLTPVCEEPRVDVMATCAGEFSEYDEYVPVVDKAVDVGCKNQVSPQKPCYPSKG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query460 2.2.26 [Sep-21-2011]
Q10137286 Sec14 cytosolic factor OS yes no 0.493 0.793 0.452 7e-54
P45816492 SEC14 cytosolic factor OS yes no 0.502 0.469 0.440 3e-53
P24280304 SEC14 cytosolic factor OS yes no 0.506 0.766 0.425 6e-51
P53989302 SEC14 cytosolic factor OS yes no 0.497 0.758 0.424 3e-50
P24859301 SEC14 cytosolic factor OS yes no 0.528 0.807 0.410 1e-48
P46250301 SEC14 cytosolic factor OS N/A no 0.530 0.810 0.419 5e-48
Q75DK1308 SEC14 cytosolic factor OS yes no 0.55 0.821 0.394 1e-47
P33324310 CRAL-TRIO domain-containi no no 0.552 0.819 0.369 3e-42
Q7PWB1684 Protein real-time OS=Anop yes no 0.469 0.315 0.340 2e-30
Q92503715 SEC14-like protein 1 OS=H yes no 0.467 0.300 0.346 2e-29
>sp|Q10137|SEC14_SCHPO Sec14 cytosolic factor OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec14 PE=4 SV=1 Back     alignment and function desciption
 Score =  211 bits (538), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 104/230 (45%), Positives = 147/230 (63%), Gaps = 3/230 (1%)

Query: 109 LLRFLKARKFDIAKATQMWADMIQWRKDFGTDTILEDFEFSEVNEVLQYYPQGYHGMDKE 168
           LLRFL+ARKF++ ++ +M+    +WRK+FG D ++++F + E   V +YYPQ YH  D +
Sbjct: 53  LLRFLRARKFNLQQSLEMFIKCEKWRKEFGVDDLIKNFHYDEKEAVSKYYPQFYHKTDID 112

Query: 169 GRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTIL 228
           GRPVY+E+LG +D  KL Q+TT +R ++  V E+E     +FPACS  A   I++S TI+
Sbjct: 113 GRPVYVEQLGNIDLKKLYQITTPERMMQNLVYEYEMLALKRFPACSRKAGGLIETSCTIM 172

Query: 229 DVQGVGFKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKT 288
           D++GVG  S+  S    I Q   I  D YPE + + ++INA  GF   +N ++ FLD  T
Sbjct: 173 DLKGVGITSI-HSVYSYIRQASSISQDYYPERMGKFYVINAPWGFSSAFNLIKGFLDEAT 231

Query: 289 TSKIHVLGNKYQSKLLEIIDASELPEFLGGSCNCADQGGCMRSDKGPWKD 338
             KIH+LG+ Y+S LLE I A  LP  LGG+C C   GGC  SD GPW +
Sbjct: 232 VKKIHILGSNYKSALLEQIPADNLPAKLGGNCQCP--GGCELSDAGPWHE 279
Has a direct role in controlling cell septation and in forespore membrane formation.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|P45816|SEC14_YARLI SEC14 cytosolic factor OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SEC14 PE=3 SV=2 Back     alignment and function description
>sp|P24280|SEC14_YEAST SEC14 cytosolic factor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC14 PE=1 SV=3 Back     alignment and function description
>sp|P53989|SEC14_CANGA SEC14 cytosolic factor OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SEC14 PE=3 SV=1 Back     alignment and function description
>sp|P24859|SEC14_KLULA SEC14 cytosolic factor OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SEC14 PE=3 SV=2 Back     alignment and function description
>sp|P46250|SEC14_CANAL SEC14 cytosolic factor OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SEC14 PE=2 SV=1 Back     alignment and function description
>sp|Q75DK1|SEC14_ASHGO SEC14 cytosolic factor OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEC14 PE=3 SV=2 Back     alignment and function description
>sp|P33324|YKJ1_YEAST CRAL-TRIO domain-containing protein YKL091C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL091C PE=1 SV=2 Back     alignment and function description
>sp|Q7PWB1|RETM_ANOGA Protein real-time OS=Anopheles gambiae GN=retm PE=3 SV=4 Back     alignment and function description
>sp|Q92503|S14L1_HUMAN SEC14-like protein 1 OS=Homo sapiens GN=SEC14L1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query460
255538726 623 phosphatidylinositol transporter, putati 1.0 0.738 0.741 0.0
225458197 623 PREDICTED: uncharacterized protein LOC10 0.984 0.727 0.763 0.0
359474936 625 PREDICTED: uncharacterized protein LOC10 0.997 0.734 0.744 0.0
356545143 629 PREDICTED: uncharacterized protein LOC10 0.984 0.720 0.733 0.0
356538743 629 PREDICTED: uncharacterized protein LOC10 0.984 0.720 0.730 0.0
224080383 636 predicted protein [Populus trichocarpa] 0.989 0.715 0.730 0.0
356564300 624 PREDICTED: uncharacterized protein LOC10 0.976 0.719 0.752 0.0
164564744 631 CM0216.430.nc [Lotus japonicus] 0.982 0.716 0.730 0.0
356551999 623 PREDICTED: uncharacterized protein LOC10 0.976 0.720 0.747 0.0
255543761 624 phosphatidylinositol transporter, putati 0.986 0.727 0.730 0.0
>gi|255538726|ref|XP_002510428.1| phosphatidylinositol transporter, putative [Ricinus communis] gi|223551129|gb|EEF52615.1| phosphatidylinositol transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/468 (74%), Positives = 397/468 (84%), Gaps = 8/468 (1%)

Query: 1   MSGPLDRFARPCFEGSCSNDERRERKSDFDNSEDDRKTRMRNLKKKAIKASSKLKPSFKK 60
           MSGPLDRFA PCFEGS  NDERRERKSDF+NSE+DRKTR+ NLKKKA+KAS + + S  K
Sbjct: 1   MSGPLDRFAIPCFEGSSGNDERRERKSDFENSEEDRKTRIGNLKKKAMKASKRFRRSLHK 60

Query: 61  KSRRKSVERVPVSIEDVRNVEELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDI 120
           +  + S E +  +IEDVR+VEEL  VDAFR+ LI ++LLP+RHD YHMLLRFLKARKFDI
Sbjct: 61  RKSKNSGEGISAAIEDVRDVEELQVVDAFRQALIGDDLLPSRHDDYHMLLRFLKARKFDI 120

Query: 121 AKATQMWADMIQWRKDFGTDTILEDFEFSEVNEVLQYYPQGYHGMDKEGRPVYIERLGKV 180
            KA QMWA+MIQWRKDFGTDTI+EDFEFSE+NEV++YYPQGYHG+DKEGRPVYIERLGKV
Sbjct: 121 EKAKQMWANMIQWRKDFGTDTIMEDFEFSELNEVVKYYPQGYHGVDKEGRPVYIERLGKV 180

Query: 181 DPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGVGFKSLTK 240
           DP+KL QVTT++RYLRYHVQEFEK FAIKFPACSIAAKRHIDSSTTILDVQGVG K+ TK
Sbjct: 181 DPSKLMQVTTVERYLRYHVQEFEKSFAIKFPACSIAAKRHIDSSTTILDVQGVGLKNFTK 240

Query: 241 SARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQ 300
           SAREL++Q+QKID DNYPETL RMFIINAG GFKLLWN+V+ FLD +T SKIHVLGNKYQ
Sbjct: 241 SARELVIQLQKIDGDNYPETLRRMFIINAGPGFKLLWNTVKSFLDTQTASKIHVLGNKYQ 300

Query: 301 SKLLEIIDASELPEFLGGSCNCADQGGCMRSDKGPWKDPNILQIVLSGEALRSRQIVTVL 360
           +KLLEIID SELPEFLGGSC CAD  GCMRSDKGPWKDP+IL++VLSGE L SRQIVT+ 
Sbjct: 301 NKLLEIIDKSELPEFLGGSCTCADHRGCMRSDKGPWKDPDILKMVLSGEVLYSRQIVTIS 360

Query: 361 NNEGRVIARDKPRFLMIKSGDTSAAESGSEVED-IASPEPTGSYLVPRLTPVCEEPRVDV 419
           N+EGRVIA +KPR+ ++K+ DTS AESGSEVED +ASP+PT +YL+PRLTPV EE RV  
Sbjct: 361 NSEGRVIASEKPRYPVVKTSDTSTAESGSEVEDVVASPKPTRNYLLPRLTPVSEEARVAG 420

Query: 420 MATCAGEFSEYDEYVPVVDKAVDVGCKNQVSPQK-------PCYPSKG 460
            A+ AG F+EYDEYVP++DK VD G   Q S Q        P  PS G
Sbjct: 421 KASAAGVFAEYDEYVPMIDKTVDDGWTKQASFQDQHTSRGIPSLPSIG 468

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225458197|ref|XP_002281429.1| PREDICTED: uncharacterized protein LOC100248963 isoform 2 [Vitis vinifera] gi|302142538|emb|CBI19741.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359474936|ref|XP_002283681.2| PREDICTED: uncharacterized protein LOC100252199 [Vitis vinifera] gi|297744421|emb|CBI37683.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356545143|ref|XP_003541004.1| PREDICTED: uncharacterized protein LOC100784405 [Glycine max] Back     alignment and taxonomy information
>gi|356538743|ref|XP_003537860.1| PREDICTED: uncharacterized protein LOC100785793 [Glycine max] Back     alignment and taxonomy information
>gi|224080383|ref|XP_002306120.1| predicted protein [Populus trichocarpa] gi|222849084|gb|EEE86631.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356564300|ref|XP_003550393.1| PREDICTED: uncharacterized protein LOC100799316 [Glycine max] Back     alignment and taxonomy information
>gi|164564744|dbj|BAF98225.1| CM0216.430.nc [Lotus japonicus] Back     alignment and taxonomy information
>gi|356551999|ref|XP_003544359.1| PREDICTED: uncharacterized protein LOC100812774 [Glycine max] Back     alignment and taxonomy information
>gi|255543761|ref|XP_002512943.1| phosphatidylinositol transporter, putative [Ricinus communis] gi|223547954|gb|EEF49446.1| phosphatidylinositol transporter, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query460
TAIR|locus:2136288 614 AT4G39170 [Arabidopsis thalian 0.997 0.747 0.653 1.2e-159
TAIR|locus:2050019 637 AT2G21520 [Arabidopsis thalian 0.995 0.718 0.635 1.4e-156
TAIR|locus:2018416 668 AT1G75370 [Arabidopsis thalian 0.980 0.675 0.610 9.3e-146
TAIR|locus:2013134 608 AT1G19650 [Arabidopsis thalian 0.976 0.738 0.590 2.4e-140
TAIR|locus:2049319 548 SFH3 "SEC14-like 3" [Arabidops 0.752 0.631 0.621 1.2e-121
TAIR|locus:2053114 558 AT2G18180 "AT2G18180" [Arabido 0.693 0.571 0.652 7.9e-117
TAIR|locus:2139564 554 COW1 "CAN OF WORMS1" [Arabidop 0.710 0.590 0.618 4.2e-115
TAIR|locus:2115265 543 SFH12 "AT4G36490" [Arabidopsis 0.710 0.602 0.640 2.2e-114
TAIR|locus:2136303 554 SEC14 "SECRETION 14" [Arabidop 0.708 0.588 0.618 4.5e-114
TAIR|locus:2042634 547 AT2G16380 [Arabidopsis thalian 0.710 0.597 0.609 3.4e-109
TAIR|locus:2136288 AT4G39170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1555 (552.4 bits), Expect = 1.2e-159, P = 1.2e-159
 Identities = 302/462 (65%), Positives = 359/462 (77%)

Query:     1 MSGPLDRFARPCFEGSCSNDERRERKSDFDNSEDDRKTRMRNXXXXXXXXXXXXXXXXXX 60
             MSGP+DRFA PCFEG  S+DE++ERKSDF+NSED+R+TR+ +                  
Sbjct:     1 MSGPVDRFAIPCFEGILSSDEKKERKSDFENSEDERRTRIGSLKKKAINASTKFKHSLKK 60

Query:    61 XXXXXXXXXXXXXIEDVRNVEELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDI 120
                          IEDVR+VEEL AVD FR+ L+ EELLP +HD YHM+LRFLKARKFDI
Sbjct:    61 KRRKSDVRVSSVSIEDVRDVEELQAVDEFRQALVMEELLPHKHDDYHMMLRFLKARKFDI 120

Query:   121 AKATQMWADMIQWRKDFGTDTILEDFEFSEVNEVLQYYPQGYHGMDKEGRPVYIERLGKV 180
              KA  MWADMIQWRK+FGTDTI++DF+F E++EVL+YYP GYH +DKEGRPVYIERLGKV
Sbjct:   121 EKAKHMWADMIQWRKEFGTDTIIQDFQFEEIDEVLKYYPHGYHSVDKEGRPVYIERLGKV 180

Query:   181 DPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGVGFKSLTK 240
             DPNKL QVTT+DRY+RYHV+EFE+ F +KFPAC+IAAK++IDSSTTILDVQGVG K+ TK
Sbjct:   181 DPNKLMQVTTLDRYIRYHVKEFERSFMLKFPACTIAAKKYIDSSTTILDVQGVGLKNFTK 240

Query:   241 SARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQ 300
             SARELI ++QKID DNYPETL +MFIINAG GF+LLW++V+ FLDPKTTSKIHVLG KYQ
Sbjct:   241 SARELITRLQKIDGDNYPETLHQMFIINAGPGFRLLWSTVKSFLDPKTTSKIHVLGCKYQ 300

Query:   301 SKLLEIIDASELPEFLGGSCNCADQGGCMRSDKGPWKDPNILQIVLSGEALRSRQIVTVL 360
             SKLLEIID+SELPEFLGG+C CADQGGCM SDKGPWK+P I+++VL G A R++Q+V VL
Sbjct:   301 SKLLEIIDSSELPEFLGGACTCADQGGCMLSDKGPWKNPEIVKMVLHGGAHRAKQVVKVL 360

Query:   361 NNEGRVIARDKPRFLMIKSGDTSAAESGSEVEDIA-SPEPTGSYLVPRLTPVCEEPRVDV 419
             N++G+VIA  KP +  IK  DTS AESGSE EDI  SP+   SY   RLTPV EE +V  
Sbjct:   361 NSDGKVIAYAKPSYPWIKGSDTSTAESGSEAEDIVVSPKAVKSYSHLRLTPVREEAKVGS 420

Query:   420 MATC-AGEFSEYDEYVPVVDKAVDVGCKNQVSPQKPCYPSKG 460
               T  AG F+ YDEYVP+VDKAVD   K + +      PSKG
Sbjct:   421 GETSFAGSFAGYDEYVPMVDKAVDATWKVKPTAINRA-PSKG 461
GO:0005215 "transporter activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0006810 "transport" evidence=IEA;ISS
GO:0008526 "phosphatidylinositol transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2050019 AT2G21520 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018416 AT1G75370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013134 AT1G19650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049319 SFH3 "SEC14-like 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053114 AT2G18180 "AT2G18180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139564 COW1 "CAN OF WORMS1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115265 SFH12 "AT4G36490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136303 SEC14 "SECRETION 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042634 AT2G16380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00014566001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (623 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query460
smart00516158 smart00516, SEC14, Domain in homologues of a S 4e-42
cd00170157 cd00170, SEC14, Sec14p-like lipid-binding domain 8e-39
pfam00650152 pfam00650, CRAL_TRIO, CRAL/TRIO domain 3e-35
smart0110048 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal dom 9e-10
pfam13716149 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain 2e-08
pfam0376548 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal doma 4e-08
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S Back     alignment and domain information 
 Score =  146 bits (370), Expect = 4e-42
 Identities = 61/169 (36%), Positives = 88/169 (52%), Gaps = 16/169 (9%)

Query: 153 EVLQYYPQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPA 212
            +  Y P G  G DK+GRPV IER G+ D        T++  LRY V   EK    +   
Sbjct: 4   LLKAYIPGGR-GYDKDGRPVLIERAGRFDLKS----VTLEELLRYLVYVLEKILQEEKK- 57

Query: 213 CSIAAKRHIDSSTTILDVQGVGFKSL-TKSARELIMQVQKIDSDNYPETLCRMFIINAGQ 271
                   I+  T I D++G+   +      R+++    KI  D+YPE L +++IIN   
Sbjct: 58  -----TGGIEGFTVIFDLKGLSMSNPDLSVLRKIL----KILQDHYPERLGKVYIINPPW 108

Query: 272 GFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGSC 320
            F++LW  ++ FLD KT  KI  +GN  + +LLE ID  +LPE LGG+ 
Sbjct: 109 FFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDKEQLPEELGGTL 157

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 158
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain Back     alignment and domain information
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain Back     alignment and domain information
>gnl|CDD|215024 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information
>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain Back     alignment and domain information
>gnl|CDD|217718 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 460
KOG1471317 consensus Phosphatidylinositol transfer protein SE 100.0
KOG1470324 consensus Phosphatidylinositol transfer protein PD 100.0
PF00650159 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T 99.97
smart00516158 SEC14 Domain in homologues of a S. cerevisiae phos 99.96
cd00170157 SEC14 Sec14p-like lipid-binding domain. Found in s 99.93
PF13716149 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q 99.47
PF0376555 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPr 98.76
KOG4406 467 consensus CDC42 Rho GTPase-activating protein [Sig 98.27
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1e-45  Score=373.16  Aligned_cols=265  Identities=47%  Similarity=0.767  Sum_probs=239.8

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCcccccchhHHHHHHhhcc
Q 012611           80 VEELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWADMIQWRKDFGTDTILEDFEFSEVNEVLQYYP  159 (460)
Q Consensus        80 ~~E~~~V~~lR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~L~~~l~WRk~~~~d~i~~d~~~~el~~vlk~~~  159 (460)
                      +.+.+.++++| |+.++++++...+|..+||||||||+||+++|++||.+++.||+++..+.+..+  .....++.++++
T Consensus        20 ~~~~~~i~~lr-~~~~~~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~--~~~~~~~~~~~~   96 (317)
T KOG1471|consen   20 ESEEAVIAQLR-WLLQKPHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFED--FEEDDELLKYYP   96 (317)
T ss_pred             HHHHHHHHHHH-HHhhccCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhc--cccchhhhhhcc
Confidence            45677788887 999999999744444699999999999999999999999999999999999876  234445666889


Q ss_pred             cccccCCCCCCcEEEEecCccCCccccccccHHHHHHHHHHHHHHHHHhhcchhhhhhhCCcCceEEEEeCCCCCccCCC
Q 012611          160 QGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGVGFKSLT  239 (460)
Q Consensus       160 ~~~~G~Dk~GRPVli~rlg~~d~~~l~~~~s~~~~ir~~v~~lE~~~~~~~pa~s~~~~~~i~~~tiIiD~~G~sl~~~~  239 (460)
                      ++++|.|++|+||++.+.|..+...++..+...+++++++..+|+.+..+++.|......+++|+++|+|++|+++.|+.
T Consensus        97 ~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~  176 (317)
T KOG1471|consen   97 QGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLL  176 (317)
T ss_pred             ccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHH
Confidence            99999999999999999999999999999999999999999999999999998887777899999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhhcCCcccceEEEEecChHHHHHHHHHhhccChhhhcceEEcCCcchHHHHhhcCCCCCccccCCC
Q 012611          240 KSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGS  319 (460)
Q Consensus       240 ~~~~~~ik~i~~ilq~~YPerL~~i~IINaP~~f~~lw~ivKpFLd~kt~~KI~~l~~~~~~~L~e~Id~~~LP~eyGGt  319 (460)
                      ...+..++.++.++|+|||++++++||||+|++|+++|++|||||+++|++||++++.++.++|.++|++++||++|||+
T Consensus       177 ~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k~i~~~~LP~~yGG~  256 (317)
T KOG1471|consen  177 KPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLLKYIPPEVLPEEYGGT  256 (317)
T ss_pred             HHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCchhhhhhhCCHhhCccccCCC
Confidence            99999999999999999999999999999999999999999999999999999977677789999999999999999999


Q ss_pred             CCCCC---CCCCcCCCCCCCCChhHHHHhhh
Q 012611          320 CNCAD---QGGCMRSDKGPWKDPNILQIVLS  347 (460)
Q Consensus       320 ~~~~~---~ggc~~~~~~pw~dp~~~k~~~~  347 (460)
                      |.+.+   .++|...+.++|.++.+.+....
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (317)
T KOG1471|consen  257 CGDLDDPNGGGCDLSDEGPWKEPEIKKGKQE  287 (317)
T ss_pred             ccccccccCCcCccccccccccccccccccc
Confidence            99963   47799999999988776654433

>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>smart00516 SEC14 Domain in homologues of a S Back     alignment and domain information
>cd00170 SEC14 Sec14p-like lipid-binding domain Back     alignment and domain information
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A Back     alignment and domain information
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query460
1aua_A296 Phosphatidylinositol Transfer Protein Sec14p From S 5e-52
3b74_A320 Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Co 2e-43
3q8g_A320 Resurrection Of A Functional Phosphatidylinositol T 1e-42
1olm_A403 Supernatant Protein Factor In Complex With Rrr-Alph 3e-22
1olm_E403 Supernatant Protein Factor In Complex With Rrr-Alph 3e-22
1o6u_A403 The Crystal Structure Of Human Supernatant Protein 6e-21
1oip_A278 The Molecular Basis Of Vitamin E Retention: Structu 2e-09
1r5l_A262 Crystal Structure Of Human Alpha-tocopherol Transfe 4e-09
3hy5_A316 Crystal Structure Of Cralbp Length = 316 6e-04
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From Saccharomyces Cerevisiae Length = 296 Back     alignment and structure 
Iteration: 1

 Score =  201 bits (512), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 100/235 (42%), Positives = 146/235 (62%), Gaps = 2/235 (0%)
Query: 109 LLRFLKARKFDIAKATQMWADMIQWRKDFGTDTILEDFEFSEVNEVLQYYPQGYHGMDKE 168
           LLRFL+ARKFD+  A +M+ +  +WRKD+GTDTIL+DF + E   + ++YPQ YH  DK+
Sbjct: 55  LLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKD 114
Query: 169 GRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTIL 228
           GRPVY E LG V+ +++ +VT+ +R L+  V E+E     + PACS AA   +++S TI+
Sbjct: 115 GRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIM 174
Query: 229 DVQGVGFKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKT 288
           D++G+   S   S    + +   I  + YPE + + +IINA  GF   +   + FLDP T
Sbjct: 175 DLKGISISS-AYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVT 233
Query: 289 TSKIHVLGNKYQSKLLEIIDASELPEFLGGSCNCAD-QGGCMRSDKGPWKDPNIL 342
            SKI +LG+ YQ +LL+ I A  LP   GG     + +GG   SD GPW+DP  +
Sbjct: 234 VSKIFILGSSYQKELLKQIPAENLPVKFGGKSEVDESKGGLYLSDIGPWRDPKYI 288
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex With Phosphatidylethanolamine Length = 320 Back     alignment and structure
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer Protein From A Pseudo-Sec14 Scaffold By Directed Evolution Length = 320 Back     alignment and structure
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor Length = 403 Back     alignment and structure
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of Human Alpha-tocopherol Transfer Protein Length = 278 Back     alignment and structure
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer Protein Bound To Its Ligand Length = 262 Back     alignment and structure
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp Length = 316 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query460
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 1e-119
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 1e-114
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 7e-95
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 8e-90
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 2e-71
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
3pg7_A256 Neurofibromin; SEC lipid binding domain, PH domain 2e-04
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296 Back     alignment and structure
 Score =  349 bits (896), Expect = e-119
 Identities = 105/265 (39%), Positives = 157/265 (59%), Gaps = 4/265 (1%)

Query: 79  NVEELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWADMIQWRKDFG 138
           +  +  A+   R+ L+ +     R D    LLRFL+ARKFD+  A +M+ +  +WRKD+G
Sbjct: 27  DSAQEKALAELRK-LLEDAGFIERLD-DSTLLRFLRARKFDVQLAKEMFENCEKWRKDYG 84

Query: 139 TDTILEDFEFSEVNEVLQYYPQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYH 198
           TDTIL+DF + E   + ++YPQ YH  DK+GRPVY E LG V+ +++ +VT+ +R L+  
Sbjct: 85  TDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNL 144

Query: 199 VQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGVGFKSLTKSARELIMQVQKIDSDNYP 258
           V E+E     + PACS AA   +++S TI+D++G+   S   S    + +   I  + YP
Sbjct: 145 VWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSA-YSVMSYVREASYISQNYYP 203

Query: 259 ETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGG 318
           E + + +IINA  GF   +   + FLDP T SKI +LG+ YQ +LL+ I A  LP   GG
Sbjct: 204 ERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGG 263

Query: 319 SCNCAD-QGGCMRSDKGPWKDPNIL 342
                + +GG   SD GPW+DP  +
Sbjct: 264 KSEVDESKGGLYLSDIGPWRDPKYI 288
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Length = 320 Back     alignment and structure
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Length = 403 Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316 Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Length = 256 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query460
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 100.0
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 100.0
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 100.0
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 100.0
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 100.0
3pg7_A256 Neurofibromin; SEC lipid binding domain, PH domain 99.21
3peg_A290 Neurofibromin; SEC14 domain, pleckstrin homology d 98.97
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Back     alignment and structure
Probab=100.00  E-value=5.7e-57  Score=455.20  Aligned_cols=265  Identities=36%  Similarity=0.666  Sum_probs=242.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCcccccchh------
Q 012611           76 DVRNVEELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWADMIQWRKDFGTDTILEDFEFS------  149 (460)
Q Consensus        76 d~~~~~E~~~V~~lR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~L~~~l~WRk~~~~d~i~~d~~~~------  149 (460)
                      .-.+++|+++|++||+||.+++ ++...|| .+||||||||+||+++|.+||+++++||++++++.+..++.++      
T Consensus        33 ~~lt~~q~~~l~~lR~~l~~~~-~~~~~dD-~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~  110 (320)
T 3q8g_A           33 GNLTKEQEEALLQFRSILLEKN-YKERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDK  110 (320)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHTT-CCSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhcC-CCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccchh
Confidence            3457889999999999999988 4567777 5999999999999999999999999999999999887765544      


Q ss_pred             HHHHHHhhcccccccCCCCCCcEEEEecCccCCccccccccHHHHHHHHHHHHHHHHHhhcchhhhhhhCCcCceEEEEe
Q 012611          150 EVNEVLQYYPQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILD  229 (460)
Q Consensus       150 el~~vlk~~~~~~~G~Dk~GRPVli~rlg~~d~~~l~~~~s~~~~ir~~v~~lE~~~~~~~pa~s~~~~~~i~~~tiIiD  229 (460)
                      +...+.++++.+++|+|++||||+|+++|++|++++.+.++.+++++++++.+|.+++.++++|+...+..++++++|+|
T Consensus       111 e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD  190 (320)
T 3q8g_A          111 ERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLD  190 (320)
T ss_dssp             HHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEE
T ss_pred             HHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEE
Confidence            44567788999999999999999999999999998877778999999999999999988888888777778999999999


Q ss_pred             CCCCCccCCChHHHHHHHHHHHHhhhcCCcccceEEEEecChHHHHHHHHHhhccChhhhcceEEcCCcchHHHHhhcCC
Q 012611          230 VQGVGFKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDA  309 (460)
Q Consensus       230 ~~G~sl~~~~~~~~~~ik~i~~ilq~~YPerL~~i~IINaP~~f~~lw~ivKpFLd~kt~~KI~~l~~~~~~~L~e~Id~  309 (460)
                      ++|++++++++. +.+++.+++++|++||+||+++||||+|++|+++|++|||||+++|++||+|+++++.++|.++||+
T Consensus       191 ~~g~sl~~~~~~-~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~i~~  269 (320)
T 3q8g_A          191 LKGISLSNAYHV-LSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPI  269 (320)
T ss_dssp             CTTCCHHHHHHT-HHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHHHSCG
T ss_pred             CCCCCHHHHHHH-HHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHhhCCh
Confidence            999999998753 7889999999999999999999999999999999999999999999999999998888899999999


Q ss_pred             CCCccccCCCCCCCC-CCCCcCCCCCCCCChhHHH
Q 012611          310 SELPEFLGGSCNCAD-QGGCMRSDKGPWKDPNILQ  343 (460)
Q Consensus       310 ~~LP~eyGGt~~~~~-~ggc~~~~~~pw~dp~~~k  343 (460)
                      ++||++|||+++|.+ +|||+.++.|||+||++++
T Consensus       270 ~~LP~~yGG~~~~~~~~ggc~~~~~gpw~~~~~~~  304 (320)
T 3q8g_A          270 ENLPVKYGGTSVLHNPNDKFYYSDIGPWRDPRYIG  304 (320)
T ss_dssp             GGSBGGGTSCBCCSSTTSCGGGBCBSGGGCTTTCC
T ss_pred             hhCChhhCCCCCCCCCCCCeecCCCCCCCChhhcC
Confidence            999999999999976 6999999999999999876
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Back     alignment and structure
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Back     alignment and structure
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 460
d1auaa2203 c.13.1.1 (A:97-299) C-terminal domain of phosphati 1e-64
d1olma3199 c.13.1.1 (A:76-274) Supernatant protein factor (SP 7e-55
d1r5la2185 c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot 2e-32
d1auaa193 a.5.3.1 (A:4-96) N-terminal domain of phosphatidyl 5e-20
d1olma175 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), 3e-16
d1r5la166 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protei 4e-09
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  204 bits (521), Expect = 1e-64
 Identities = 76/196 (38%), Positives = 114/196 (58%), Gaps = 2/196 (1%)

Query: 148 FSEVNEVLQYYPQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFA 207
           + E   + ++YPQ YH  DK+GRPVY E LG V+ +++ +VT+ +R L+  V E+E    
Sbjct: 1   YDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQ 60

Query: 208 IKFPACSIAAKRHIDSSTTILDVQGVGFKSLTKSARELIMQVQKIDSDNYPETLCRMFII 267
            + PACS AA   +++S TI+D++G+   S   S    + +   I  + YPE + + +II
Sbjct: 61  YRLPACSRAAGHLVETSCTIMDLKGISISSA-YSVMSYVREASYISQNYYPERMGKFYII 119

Query: 268 NAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGSCNCAD-QG 326
           NA  GF   +   + FLDP T SKI +LG+ YQ +LL+ I A  LP   GG     + +G
Sbjct: 120 NAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGGKSEVDESKG 179

Query: 327 GCMRSDKGPWKDPNIL 342
           G   SD GPW+DP  +
Sbjct: 180 GLYLSDIGPWRDPKYI 195
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199 Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185 Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 93 Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 75 Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 66 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query460
d1auaa2203 C-terminal domain of phosphatidylinositol transfer 100.0
d1olma3199 Supernatant protein factor (SPF), middle domain {H 100.0
d1r5la2185 Alpha-tocopherol transfer protein {Human (Homo sap 99.97
d1olma175 Supernatant protein factor (SPF), N-terminal domai 99.49
d1auaa193 N-terminal domain of phosphatidylinositol transfer 99.43
d1r5la166 Alpha-tocopherol transfer protein {Human (Homo sap 99.35
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-40  Score=310.60  Aligned_cols=190  Identities=39%  Similarity=0.719  Sum_probs=177.1

Q ss_pred             HHHhhcccccccCCCCCCcEEEEecCccCCccccccccHHHHHHHHHHHHHHHHHhhcchhhhhhhCCcCceEEEEeCCC
Q 012611          153 EVLQYYPQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQG  232 (460)
Q Consensus       153 ~vlk~~~~~~~G~Dk~GRPVli~rlg~~d~~~l~~~~s~~~~ir~~v~~lE~~~~~~~pa~s~~~~~~i~~~tiIiD~~G  232 (460)
                      .+.++||+++||+|++||||+|+++|++|+.++.+..+.+++++++++.+|.+++...+.++.....+++++++|+|++|
T Consensus         6 ~~~~~~p~~~~G~Dk~GrpV~~~r~g~~~~~~l~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~v~~~i~IiD~~g   85 (203)
T d1auaa2           6 LIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKG   85 (203)
T ss_dssp             HHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTT
T ss_pred             HHHHHCCCcCCCCCCCCCEEEEEECCCCChHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCccceEEEEEECCC
Confidence            46899999999999999999999999999999988889999999999999999988777666666778999999999999


Q ss_pred             CCccCCChHHHHHHHHHHHHhhhcCCcccceEEEEecChHHHHHHHHHhhccChhhhcceEEcCCcchHHHHhhcCCCCC
Q 012611          233 VGFKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDASEL  312 (460)
Q Consensus       233 ~sl~~~~~~~~~~ik~i~~ilq~~YPerL~~i~IINaP~~f~~lw~ivKpFLd~kt~~KI~~l~~~~~~~L~e~Id~~~L  312 (460)
                      ++++++.. ...+++.+++++|++||++++++||||+|++|+++|+++++||+++|++||+|+++++.+.|.++||+++|
T Consensus        86 ~s~~~~~~-~~~~~k~~~~~~q~~yPe~l~~i~ivN~P~~~~~~~~~vk~fl~~~t~~KI~~~~~~~~~~L~~~id~~~L  164 (203)
T d1auaa2          86 ISISSAYS-VMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENL  164 (203)
T ss_dssp             CCHHHHHH-HHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSS
T ss_pred             CChHHhhh-HHHHHHHHHHHHHHhChHhhcceEEECCcHHHHHHHHHHHhhcCHHHhhceeecCCCCHHHHHhhCCHhhC
Confidence            99998864 46889999999999999999999999999999999999999999999999999998888999999999999


Q ss_pred             ccccCCCCCCCCC-CCCcCCCCCCCCChhHHH
Q 012611          313 PEFLGGSCNCADQ-GGCMRSDKGPWKDPNILQ  343 (460)
Q Consensus       313 P~eyGGt~~~~~~-ggc~~~~~~pw~dp~~~k  343 (460)
                      |.+|||+|+|.+. |+|+..+.|||+||++++
T Consensus       165 P~~~GG~~~~~~~~g~~~~~~~~~~~~p~~~~  196 (203)
T d1auaa2         165 PVKFGGKSEVDESKGGLYLSDIGPWRDPKYIG  196 (203)
T ss_dssp             BGGGTSCBCCCGGGCCSTTCCCSGGGCGGGCC
T ss_pred             hHHhCCCCcCCCCCCCccccCCCCCCChhhcC
Confidence            9999999999754 999999999999999765
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure