Citrus Sinensis ID: 012627
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 459 | 2.2.26 [Sep-21-2011] | |||||||
| Q8GW61 | 504 | Sugar transport protein 1 | yes | no | 0.978 | 0.890 | 0.763 | 0.0 | |
| O04249 | 513 | Sugar transport protein 7 | no | no | 0.986 | 0.883 | 0.603 | 1e-163 | |
| Q10710 | 522 | Sugar carrier protein A O | N/A | no | 0.969 | 0.852 | 0.610 | 1e-154 | |
| Q94AZ2 | 526 | Sugar transport protein 1 | no | no | 0.980 | 0.855 | 0.571 | 1e-149 | |
| Q9LT15 | 514 | Sugar transport protein 1 | no | no | 0.978 | 0.873 | 0.524 | 1e-141 | |
| Q07423 | 510 | Hexose carrier protein HE | N/A | no | 0.978 | 0.880 | 0.533 | 1e-140 | |
| Q9SX48 | 517 | Sugar transport protein 9 | no | no | 0.978 | 0.868 | 0.523 | 1e-139 | |
| Q41144 | 523 | Sugar carrier protein C O | N/A | no | 0.978 | 0.858 | 0.547 | 1e-138 | |
| P23586 | 522 | Sugar transport protein 1 | no | no | 0.976 | 0.858 | 0.534 | 1e-134 | |
| O65413 | 508 | Sugar transport protein 1 | no | no | 0.978 | 0.883 | 0.535 | 1e-132 |
| >sp|Q8GW61|STP14_ARATH Sugar transport protein 14 OS=Arabidopsis thaliana GN=STP14 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/449 (76%), Positives = 395/449 (87%)
Query: 1 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR 60
MDDFLKEFFP +Y+RKQ HL ETDYCKYDNQ+LTLFTSSLYFAGL+STFGASYVTR GR
Sbjct: 53 MDDFLKEFFPGIYKRKQMHLNETDYCKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGR 112
Query: 61 RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 120
R SI+VGSVSFF+G ++NA A +I ML+LGRIFLG+GIGFGNQAVPLYLSEMAPAKIRG
Sbjct: 113 RGSILVGSVSFFLGGVINAAAKNILMLILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGT 172
Query: 121 VNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLV 180
VNQLFQLTTC+GILVANLINY TE+IHPWGWRLSLGLATVPA LMF+GGL LPETPNSLV
Sbjct: 173 VNQLFQLTTCIGILVANLINYKTEQIHPWGWRLSLGLATVPAILMFLGGLVLPETPNSLV 232
Query: 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALG 240
EQGKL++A+ VL KVRGT N++AEF DL++AS+AARA+KNPFRNL ++NRPQLVIGA+G
Sbjct: 233 EQGKLEKAKAVLIKVRGTNNIEAEFQDLVEASDAARAVKNPFRNLLARRNRPQLVIGAIG 292
Query: 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRA 300
+PAFQQLTGMNSILFYAPV+FQSLGFG A+L SS IT AL +AA++SM DKFGRR
Sbjct: 293 LPAFQQLTGMNSILFYAPVMFQSLGFGGSASLISSTITNAALVVAAIMSMYSADKFGRRF 352
Query: 301 FFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLV 360
LEA EM YMV+V +TLAL+FGEGK LPK +G+ LV++ICLFVLAYGRSWGP+GWLV
Sbjct: 353 LLLEASVEMFCYMVVVGVTLALKFGEGKELPKSLGLILVVLICLFVLAYGRSWGPMGWLV 412
Query: 361 PSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYF 420
PSELFPLE RSAGQSVVVC NL FTALIAQ FL +LCHLK+GIFL+F GL++ M +F+YF
Sbjct: 413 PSELFPLETRSAGQSVVVCVNLFFTALIAQCFLVSLCHLKYGIFLLFAGLILGMGSFVYF 472
Query: 421 FLPETKQVPIEEIYLLFENHWFWKRIVKE 449
LPETKQVPIEE+YLL+ HW WK+ V++
Sbjct: 473 LLPETKQVPIEEVYLLWRQHWLWKKYVED 501
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04249|STP7_ARATH Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 574 bits (1479), Expect = e-163, Method: Compositional matrix adjust.
Identities = 279/462 (60%), Positives = 354/462 (76%), Gaps = 9/462 (1%)
Query: 1 MDDFLKEFFPKVY-RRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRG 59
MD+FL+EFF VY ++KQAH E++YCKYDNQ L FTSSLY AGLVST AS +TR+ G
Sbjct: 54 MDEFLEEFFHTVYEKKKQAH--ESNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYG 111
Query: 60 RRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRG 119
RRASI+ G +SF IG+ LNA AV+++MLL GRI LG+GIGFGNQAVPLYLSE+AP +RG
Sbjct: 112 RRASIVCGGISFLIGSGLNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRG 171
Query: 120 AVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSL 179
+N +FQL T +GI AN++NYGT+++ PWGWRLSLGLA PA LM +GG FLPETPNSL
Sbjct: 172 GLNMMFQLATTIGIFTANMVNYGTQQLKPWGWRLSLGLAAFPALLMTLGGYFLPETPNSL 231
Query: 180 VEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGAL 239
VE+G + R+VL K+RGT NV+AE D++DAS A +IK+PFRN+ +K++RPQLV+ A+
Sbjct: 232 VERGLTERGRRVLVKLRGTENVNAELQDMVDASELANSIKHPFRNILQKRHRPQLVM-AI 290
Query: 240 GIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRR 299
+P FQ LTG+NSILFYAPV+FQ++GFG A+LYSS +TG L ++ IS+ VD+ GRR
Sbjct: 291 CMPMFQILTGINSILFYAPVLFQTMGFGGNASLYSSALTGAVLVLSTFISIGLVDRLGRR 350
Query: 300 AFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWL 359
A + G +MII VIVA+ L ++FG+ + L KG + +VI ICLFV+A+G SWGPLGW
Sbjct: 351 ALLITGGIQMIICQVIVAVILGVKFGDNQELSKGYSVIVVIFICLFVVAFGWSWGPLGWT 410
Query: 360 VPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIY 419
+PSE+FPLE RSAGQS+ V NLLFT +IAQAFL LC KFGIFL F G V +M+ F+Y
Sbjct: 411 IPSEIFPLETRSAGQSITVAVNLLFTFIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVY 470
Query: 420 FFLPETKQVPIEEIYLLFENHWFWKRIVK-----EDNGKFVE 456
F LPETK VPIEE+ LL+ HWFWK+++ ED K V
Sbjct: 471 FLLPETKGVPIEEMTLLWSKHWFWKKVLPDATNLEDESKNVS 512
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q10710|STA_RICCO Sugar carrier protein A OS=Ricinus communis GN=STA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 545 bits (1404), Expect = e-154, Method: Compositional matrix adjust.
Identities = 273/447 (61%), Positives = 339/447 (75%), Gaps = 2/447 (0%)
Query: 1 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR 60
MD FL++FF VY +K+ H E +YCKYD+Q L FTSSLY AGL ++ A +TR GR
Sbjct: 54 MDAFLEKFFRSVYLKKK-HAHENNYCKYDDQRLAAFTSSLYLAGLAASLVAGPITRIYGR 112
Query: 61 RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 120
RASI+ G +SF IGA LNA A++++MLLLGRI LG+GIGFGNQAVPLYLSEMAP +RG
Sbjct: 113 RASIISGGISFLIGAALNATAINLAMLLLGRIMLGVGIGFGNQAVPLYLSEMAPTHLRGG 172
Query: 121 VNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLV 180
+N +FQL T GI AN++NYGT K+ WGWRLSLGLA PA LM +GGL LPETPNSL+
Sbjct: 173 LNIMFQLATTSGIFTANMVNYGTHKLESWGWRLSLGLAAAPALLMTIGGLLLPETPNSLI 232
Query: 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALG 240
EQG ++ R VLEK+RGT +VDAEF D++DAS A +IK+PFRN+ +K+NRPQLV+ A+
Sbjct: 233 EQGLHEKGRNVLEKIRGTKHVDAEFQDMLDASELANSIKHPFRNILEKRNRPQLVM-AIF 291
Query: 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRA 300
+P FQ LTG+N ILFYAP +FQS+GFG AALYSS +TG LC + IS+A VD+ GRR
Sbjct: 292 MPTFQILTGINIILFYAPPLFQSMGFGGNAALYSSAVTGAVLCSSTFISIATVDRLGRRF 351
Query: 301 FFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLV 360
+ G +MI VIVAI L ++FG+ + L K + +VI+ICLFVLA+G SWGPLGW V
Sbjct: 352 LLISGGIQMITCQVIVAIILGVKFGDNQQLSKSFSVLVVIMICLFVLAFGWSWGPLGWTV 411
Query: 361 PSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYF 420
PSE+FPLE RSAGQS+ V NL FT +IAQ+F + LC KFGIFL F G V +M+AF+Y
Sbjct: 412 PSEIFPLETRSAGQSITVAVNLFFTFVIAQSFPSLLCAFKFGIFLFFAGWVTVMTAFVYI 471
Query: 421 FLPETKQVPIEEIYLLFENHWFWKRIV 447
FLPETK VPIEE+ L+ HWFWK+IV
Sbjct: 472 FLPETKGVPIEEMIFLWRKHWFWKKIV 498
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Ricinus communis (taxid: 3988) |
| >sp|Q94AZ2|STP13_ARATH Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 529 bits (1363), Expect = e-149, Method: Compositional matrix adjust.
Identities = 260/455 (57%), Positives = 338/455 (74%), Gaps = 5/455 (1%)
Query: 1 MDDFLKEFFPKVYRRKQAHLT-ETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRG 59
M DFL++FFP VYR+ A +++YCKYDNQ L LFTSSLY AGL +TF ASY TR+ G
Sbjct: 50 MPDFLEKFFPVVYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLG 109
Query: 60 RRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRG 119
RR ++++ V F IG LNA A ++ML+ GRI LG G+GF NQAVPL+LSE+AP +IRG
Sbjct: 110 RRLTMLIAGVFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRG 169
Query: 120 AVNQLFQLTTCLGILVANLINYGTEKIH-PWGWRLSLGLATVPATLMFVGGLFLPETPNS 178
+N LFQL +GIL ANL+NYGT KI WGWRLSLGLA +PA L+ VG L + ETPNS
Sbjct: 170 GLNILFQLNVTIGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNS 229
Query: 179 LVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGA 238
LVE+G+LDE + VL ++RGT NV+ EF+DL++AS A+ +K+PFRNL +++NRPQLVI A
Sbjct: 230 LVERGRLDEGKAVLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVI-A 288
Query: 239 LGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGR 298
+ + FQQ TG+N+I+FYAPV+F +LGFGS A+LYS+V+TG ++ L+S+ VDK GR
Sbjct: 289 VALQIFQQCTGINAIMFYAPVLFSTLGFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGR 348
Query: 299 RAFFLEAGTEMIIYMVIVAITLALEFGE-GKPLPKGIGIFLVIVICLFVLAYGRSWGPLG 357
R LEAG +M V++AI L ++ + L KG I +V++IC +V A+ SWGPLG
Sbjct: 349 RVLLLEAGVQMFFSQVVIAIILGVKVTDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLG 408
Query: 358 WLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAF 417
WL+PSE FPLE RSAGQSV VC NLLFT +IAQAFL+ LCH KFGIF+ F V+IMS F
Sbjct: 409 WLIPSETFPLETRSAGQSVTVCVNLLFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVF 468
Query: 418 IYFFLPETKQVPIEEIY-LLFENHWFWKRIVKEDN 451
+ F LPETK +PIEE+ +++ HWFW R + + N
Sbjct: 469 VMFLLPETKNIPIEEMTERVWKKHWFWARFMDDHN 503
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LT15|STP10_ARATH Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 501 bits (1289), Expect = e-141, Method: Compositional matrix adjust.
Identities = 237/452 (52%), Positives = 329/452 (72%), Gaps = 3/452 (0%)
Query: 1 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR 60
M++FL +FFP+V + + +T YCK+DNQ+L LFTSSLY A LV++F AS +TR GR
Sbjct: 52 MEEFLTKFFPQVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGR 111
Query: 61 RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 120
+ S+ +G ++F IGA+ NA AV++SML++GR+ LG+G+GF NQ+ P+YLSEMAPAKIRGA
Sbjct: 112 KVSMFIGGLAFLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGA 171
Query: 121 VNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLV 180
+N FQ+ +GILVANLINYGT K+ GWR+SLGLA VPA +M +G LP+TPNS++
Sbjct: 172 LNIGFQMAITIGILVANLINYGTSKMAQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSML 231
Query: 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALG 240
E+GK +EA+++L+K+RG NVD EF DLIDA AA+ ++NP++N+ + K RP L+ +
Sbjct: 232 ERGKNEEAKQMLKKIRGADNVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCS-A 290
Query: 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRA 300
IP FQQ+TG+N I+FYAPV+F++LGFG AAL S+VITG+ ++ +S+ VD++GRR
Sbjct: 291 IPFFQQITGINVIMFYAPVLFKTLGFGDDAALMSAVITGVVNMLSTFVSIYAVDRYGRRL 350
Query: 301 FFLEAGTEMIIYMVIVAITLALEFGEG--KPLPKGIGIFLVIVICLFVLAYGRSWGPLGW 358
FLE G +M I ++V + FG L +++ IC++V + SWGPLGW
Sbjct: 351 LFLEGGIQMFICQLLVGSFIGARFGTSGTGTLTPATADWILAFICVYVAGFAWSWGPLGW 410
Query: 359 LVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFI 418
LVPSE+ PLE+R AGQ++ V N+ FT LI Q FL LCH+KFG+F F +V IM+ FI
Sbjct: 411 LVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFASMVAIMTVFI 470
Query: 419 YFFLPETKQVPIEEIYLLFENHWFWKRIVKED 450
YF LPETK VPIEE+ +++ HWFWK+ + ED
Sbjct: 471 YFLLPETKGVPIEEMGRVWKQHWFWKKYIPED 502
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q07423|HEX6_RICCO Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 498 bits (1283), Expect = e-140, Method: Compositional matrix adjust.
Identities = 241/452 (53%), Positives = 333/452 (73%), Gaps = 3/452 (0%)
Query: 1 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR 60
MD FLK+FFP VYR+ + ++YCK+D+Q+LT FTSSLY AGLV++F AS VTR+ GR
Sbjct: 49 MDPFLKKFFPDVYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGR 108
Query: 61 RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 120
+ SI++G F A L AV++ ML+ GR+ LG+G+GF NQAVPLYLSEMAP + RGA
Sbjct: 109 KPSILLGGXVFLAXAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGA 168
Query: 121 VNQLFQLTTCLGILVANLINYGTEKIHP-WGWRLSLGLATVPATLMFVGGLFLPETPNSL 179
+N FQ + +G L ANLINYGTEKI WGWR+SL +A VPA ++ G LFLPETPNSL
Sbjct: 169 INNGFQFSVGIGALSANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGALFLPETPNSL 228
Query: 180 VEQGKLDE-ARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGA 238
+++ E A+ +L++VRGT +V AE DLI AS +R I++PF+N+ ++K RPQLV+ A
Sbjct: 229 IQRSNDHERAKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQLVM-A 287
Query: 239 LGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGR 298
+ IP FQQ+TG+N I FYAP++F+++G A+L SS++TG+ + ISM VDK GR
Sbjct: 288 VAIPFFQQVTGINVIAFYAPILFRTIGLEESASLLSSIVTGLVGSASTFISMLIVDKLGR 347
Query: 299 RAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGW 358
RA F+ G +M + ++V +A E G+ + KG ++I+IC++V +G SWGPLGW
Sbjct: 348 RALFIFGGVQMFVAQIMVGSIMAAELGDHGGIGKGYAYIVLILICIYVAGFGWSWGPLGW 407
Query: 359 LVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFI 418
LVPSE+FPLE+RSAGQS+VV + LFT ++AQ FL+ LCH K GIF FGG VV+M+AF+
Sbjct: 408 LVPSEIFPLEIRSAGQSIVVAVSFLFTFVVAQTFLSMLCHFKSGIFFFFGGWVVVMTAFV 467
Query: 419 YFFLPETKQVPIEEIYLLFENHWFWKRIVKED 450
+F LPETK+VPIE++ +++ +HWFWK+I+ E+
Sbjct: 468 HFLLPETKKVPIEKMDIVWRDHWFWKKIIGEE 499
|
Active uptake of hexoses. Probable glucose/hydrogen symport. Ricinus communis (taxid: 3988) |
| >sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 496 bits (1278), Expect = e-139, Method: Compositional matrix adjust.
Identities = 237/453 (52%), Positives = 330/453 (72%), Gaps = 4/453 (0%)
Query: 1 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR 60
M++FL +FFP+V ++ ET YCK+DNQ+L LFTSSLY A L S+F AS VTR GR
Sbjct: 52 MEEFLSKFFPEVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGR 111
Query: 61 RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 120
+ S+ VG V+F IG++ NA A +++ML++GR+ LG+G+GF NQ+ P+YLSEMAPAKIRGA
Sbjct: 112 KISMFVGGVAFLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGA 171
Query: 121 VNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLV 180
+N FQ+ +GIL+ANLINYGT ++ GWR+SLGLA VPA +M +G LP+TPNS++
Sbjct: 172 LNIGFQMAITIGILIANLINYGTSQMAKNGWRVSLGLAAVPAVIMVIGSFVLPDTPNSML 231
Query: 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKK-KNRPQLVIGAL 239
E+GK ++AR++L+K+RG NVD EF DL DA AA+ + NP++N+F++ K RP LV +
Sbjct: 232 ERGKYEQAREMLQKIRGADNVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFCS- 290
Query: 240 GIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRR 299
IP FQQ+TG+N I+FYAPV+F++LGF A+L S+VITG ++ L+S+ VD++GRR
Sbjct: 291 AIPFFQQITGINVIMFYAPVLFKTLGFADDASLISAVITGAVNVVSTLVSIYAVDRYGRR 350
Query: 300 AFFLEAGTEMIIYMVIVAITLALEFGE--GKPLPKGIGIFLVIVICLFVLAYGRSWGPLG 357
FLE G +MI+ ++V + ++FG L +++ ICL+V + SWGPLG
Sbjct: 351 ILFLEGGIQMIVSQIVVGTLIGMKFGTTGSGTLTPATADWILAFICLYVAGFAWSWGPLG 410
Query: 358 WLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAF 417
WLVPSE+ PLE+R AGQ++ V N+ FT LI Q FL LCH+KFG+F FGG+V +M+ F
Sbjct: 411 WLVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFGGMVAVMTVF 470
Query: 418 IYFFLPETKQVPIEEIYLLFENHWFWKRIVKED 450
IYF LPETK VPIEE+ +++ H FWKR + +D
Sbjct: 471 IYFLLPETKGVPIEEMGRVWKQHPFWKRYMPDD 503
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q41144|STC_RICCO Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 491 bits (1264), Expect = e-138, Method: Compositional matrix adjust.
Identities = 249/455 (54%), Positives = 335/455 (73%), Gaps = 6/455 (1%)
Query: 1 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR 60
MD FLK+FFP VYR+K+A + YC+YD+Q LT+FTSSLY A L+++ AS +TR GR
Sbjct: 52 MDSFLKKFFPSVYRKKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITRKFGR 111
Query: 61 RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 120
+ S++ G V F GAI+N A + ML+LGRI LG GIGF NQ+VPLYLSEMAP K RGA
Sbjct: 112 KLSMLFGGVLFCAGAIINGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGA 171
Query: 121 VNQLFQLTTCLGILVANLINYGTEKIH-PWGWRLSLGLATVPATLMFVGGLFLPETPNSL 179
+N FQL+ +GILVAN++NY KI WGWRLSLG A VPA ++ VG L LP+TPNS+
Sbjct: 172 LNIGFQLSITIGILVANVLNYFFAKIKGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSM 231
Query: 180 VEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGAL 239
+E+G+ +EAR L++VRG +VD EF+DL+ AS ++ +++P+RNL ++K RP L + A+
Sbjct: 232 IERGQHEEARAHLKRVRGVEDVDEEFTDLVHASEDSKKVEHPWRNLLQRKYRPHLSM-AI 290
Query: 240 GIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRR 299
IP FQQLTG+N I+FYAPV+F ++GFGS AAL S+VITG+ A ++S+ VDK+GRR
Sbjct: 291 AIPFFQQLTGINVIMFYAPVLFDTIGFGSDAALMSAVITGLVNVFATMVSIYGVDKWGRR 350
Query: 300 AFFLEAGTEMIIYMVIVAITLALEFG-EGKP--LPKGIGIFLVIVICLFVLAYGRSWGPL 356
FLE G +M+I IVA + +FG +G P LP+ + +V+ IC++V + SWGPL
Sbjct: 351 FLFLEGGVQMLICQAIVAACIGAKFGVDGAPGDLPQWYAVVVVLFICIYVSGFAWSWGPL 410
Query: 357 GWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSA 416
GWLVPSE+FPLE+RSA QSV V N+ FT ++AQ FL LCHLKFG+F+ F V+IMS
Sbjct: 411 GWLVPSEIFPLEIRSAAQSVNVSVNMFFTFVVAQVFLIMLCHLKFGLFIFFSFFVLIMSI 470
Query: 417 FIYFFLPETKQVPIEEIYLLFENHWFWKR-IVKED 450
F+Y+FLPETK +PIEE+ +++ HW+W R +V ED
Sbjct: 471 FVYYFLPETKGIPIEEMGQVWKQHWYWSRYVVDED 505
|
Ricinus communis (taxid: 3988) |
| >sp|P23586|STP1_ARATH Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 478 bits (1229), Expect = e-134, Method: Compositional matrix adjust.
Identities = 242/453 (53%), Positives = 327/453 (72%), Gaps = 5/453 (1%)
Query: 1 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR 60
M FLK FFP VYR++Q + YC+YD+ LT+FTSSLY A L+S+ AS VTR GR
Sbjct: 50 MPSFLKRFFPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGR 109
Query: 61 RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 120
R S++ G + F GA++N A H+ ML++GRI LG GIGF NQAVPLYLSEMAP K RGA
Sbjct: 110 RLSMLFGGILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGA 169
Query: 121 VNQLFQLTTCLGILVANLINYGTEKIH-PWGWRLSLGLATVPATLMFVGGLFLPETPNSL 179
+N FQL+ +GILVA ++NY KI WGWRLSLG A VPA ++ +G L LP+TPNS+
Sbjct: 170 LNIGFQLSITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSM 229
Query: 180 VEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGAL 239
+E+G+ +EA+ L ++RG +V EF DL+ AS +++I++P+RNL ++K RP L + A+
Sbjct: 230 IERGQHEEAKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTM-AV 288
Query: 240 GIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRR 299
IP FQQLTG+N I+FYAPV+F ++GF + A+L S+V+TG A L+S+ VD++GRR
Sbjct: 289 MIPFFQQLTGINVIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRR 348
Query: 300 AFFLEAGTEMIIYMVIVAITLALEFG-EGKP--LPKGIGIFLVIVICLFVLAYGRSWGPL 356
FLE GT+M+I +VA + +FG +G P LPK I +V IC++V + SWGPL
Sbjct: 349 FLFLEGGTQMLICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPL 408
Query: 357 GWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSA 416
GWLVPSE+FPLE+RSA QS+ V N++FT +IAQ FL LCHLKFG+FLVF VV+MS
Sbjct: 409 GWLVPSEIFPLEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSI 468
Query: 417 FIYFFLPETKQVPIEEIYLLFENHWFWKRIVKE 449
F+Y FLPETK +PIEE+ ++ +HW+W R V++
Sbjct: 469 FVYIFLPETKGIPIEEMGQVWRSHWYWSRFVED 501
|
Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings. Arabidopsis thaliana (taxid: 3702) |
| >sp|O65413|STP12_ARATH Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 471 bits (1213), Expect = e-132, Method: Compositional matrix adjust.
Identities = 243/454 (53%), Positives = 327/454 (72%), Gaps = 5/454 (1%)
Query: 1 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR 60
MD F ++FFP VY +++ YC++D+ LTLFTSSLY A L S+ ASYVTR GR
Sbjct: 50 MDSFQQKFFPSVYEKQKKDHDSNQYCRFDSVSLTLFTSSLYLAALCSSLVASYVTRQFGR 109
Query: 61 RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 120
+ S+++G V F GA+LN A + ML++GR+ LG GIGF NQ+VPLYLSEMAP K RGA
Sbjct: 110 KISMLLGGVLFCAGALLNGFATAVWMLIVGRLLLGFGIGFTNQSVPLYLSEMAPYKYRGA 169
Query: 121 VNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLV 180
+N FQL+ +GILVAN++N+ KI WGWRLSLG A VPA ++ VG L LP+TPNS++
Sbjct: 170 LNIGFQLSITIGILVANVLNFFFSKIS-WGWRLSLGGAVVPALIITVGSLILPDTPNSMI 228
Query: 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALG 240
E+G+ A L K+RG ++D E +DLI AS A++ +++P+RNL ++K RP L + L
Sbjct: 229 ERGQFRLAEAKLRKIRGVDDIDDEINDLIIASEASKLVEHPWRNLLQRKYRPHLTMAIL- 287
Query: 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRA 300
IPAFQQLTG+N I+FYAPV+FQ++GFGS AAL S+V+TG+ A ++S+ VDK+GRR
Sbjct: 288 IPAFQQLTGINVIMFYAPVLFQTIGFGSDAALISAVVTGLVNVGATVVSIYGVDKWGRRF 347
Query: 301 FFLEAGTEMIIYMVIVAITLALEFG-EGKP--LPKGIGIFLVIVICLFVLAYGRSWGPLG 357
FLE G +M+I V VA + +FG +G P LPK I +V+ IC++V A+ SWGPLG
Sbjct: 348 LFLEGGFQMLISQVAVAAAIGAKFGVDGTPGVLPKWYAIVVVLFICIYVAAFAWSWGPLG 407
Query: 358 WLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAF 417
WLVPSE+FPLE+RSA QS+ V N++FT LIAQ FL LCHLKFG+F+ F VV+MS F
Sbjct: 408 WLVPSEIFPLEIRSAAQSITVSVNMIFTFLIAQVFLMMLCHLKFGLFIFFAFFVVVMSIF 467
Query: 418 IYFFLPETKQVPIEEIYLLFENHWFWKRIVKEDN 451
+Y FLPET+ VPIEE+ ++ +HW+W + V +
Sbjct: 468 VYLFLPETRGVPIEEMNRVWRSHWYWSKFVDAEK 501
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 459 | ||||||
| 255552117 | 516 | sugar transporter, putative [Ricinus com | 0.989 | 0.879 | 0.842 | 0.0 | |
| 449466087 | 522 | PREDICTED: sugar transport protein 14-li | 0.993 | 0.873 | 0.822 | 0.0 | |
| 224142179 | 508 | predicted protein [Populus trichocarpa] | 0.973 | 0.879 | 0.836 | 0.0 | |
| 255589859 | 509 | sugar transporter, putative [Ricinus com | 0.973 | 0.878 | 0.807 | 0.0 | |
| 147799431 | 547 | hypothetical protein VITISV_012307 [Viti | 0.976 | 0.819 | 0.794 | 0.0 | |
| 225445142 | 512 | PREDICTED: sugar transport protein 14 [V | 0.993 | 0.890 | 0.784 | 0.0 | |
| 356495228 | 510 | PREDICTED: sugar transport protein 14-li | 0.982 | 0.884 | 0.787 | 0.0 | |
| 356529642 | 512 | PREDICTED: sugar transport protein 14-li | 0.978 | 0.876 | 0.788 | 0.0 | |
| 357500557 | 510 | Sugar transport protein [Medicago trunca | 0.982 | 0.884 | 0.782 | 0.0 | |
| 449521365 | 534 | PREDICTED: sugar transport protein 14-li | 0.986 | 0.848 | 0.777 | 0.0 |
| >gi|255552117|ref|XP_002517103.1| sugar transporter, putative [Ricinus communis] gi|223543738|gb|EEF45266.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/456 (84%), Positives = 428/456 (93%), Gaps = 2/456 (0%)
Query: 1 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR 60
MDDFLK+FFPKVY+RKQ HL ETDYCKYDNQ+LTLFTSSLYFA LVSTFGASY+TR++GR
Sbjct: 53 MDDFLKDFFPKVYKRKQEHLNETDYCKYDNQMLTLFTSSLYFAALVSTFGASYITRNKGR 112
Query: 61 RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 120
RASI+VGS+SFF+GAILNA AV+I+ML++GRI LG+GIGFGNQAVPLYLSEMAPAKIRGA
Sbjct: 113 RASIIVGSISFFLGAILNAAAVNIAMLIIGRILLGIGIGFGNQAVPLYLSEMAPAKIRGA 172
Query: 121 VNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLV 180
VNQLFQLTTCLGIL+ANLINYGTEKIHPWGWRLSLGLATVPATLMF+GG+FLPETPNSLV
Sbjct: 173 VNQLFQLTTCLGILIANLINYGTEKIHPWGWRLSLGLATVPATLMFIGGVFLPETPNSLV 232
Query: 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALG 240
EQG+L+E RKVLEKVRGTA VDAEF+DLIDASNAARAI++PF+NL K+KNRPQL+IGALG
Sbjct: 233 EQGRLEEGRKVLEKVRGTAKVDAEFADLIDASNAARAIQHPFKNLLKRKNRPQLIIGALG 292
Query: 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRA 300
IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVIT AL + ALISMA VDK+GRRA
Sbjct: 293 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITSGALVLGALISMALVDKYGRRA 352
Query: 301 FFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLV 360
FFLEAGTEM+ YMV VAITLAL+FG+G LPK IGIFLVI+ICLFVLAYGRSWGPLGWLV
Sbjct: 353 FFLEAGTEMLCYMVAVAITLALKFGQGVTLPKEIGIFLVIIICLFVLAYGRSWGPLGWLV 412
Query: 361 PSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYF 420
PSE+FPLE RSAGQS+VVC N+LFTALIAQ FL +LCHL++GIFLVFGGL++IMS+FI+F
Sbjct: 413 PSEIFPLETRSAGQSMVVCVNMLFTALIAQCFLVSLCHLRYGIFLVFGGLILIMSSFIFF 472
Query: 421 FLPETKQVPIEEIYLLFENHWFWKRIVKEDNGKFVE 456
LPETKQVPIEE+YLL++NHWFWKRIV NG VE
Sbjct: 473 LLPETKQVPIEEVYLLWQNHWFWKRIV--GNGDQVE 506
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449466087|ref|XP_004150758.1| PREDICTED: sugar transport protein 14-like [Cucumis sativus] gi|449527949|ref|XP_004170970.1| PREDICTED: sugar transport protein 14-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/456 (82%), Positives = 416/456 (91%)
Query: 1 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR 60
MDDFLKEFFPKVYRRKQ HL ETDYCKYDNQ+LTLFTSSLYFAGLVSTF ASYVTR+RGR
Sbjct: 54 MDDFLKEFFPKVYRRKQLHLKETDYCKYDNQILTLFTSSLYFAGLVSTFAASYVTRNRGR 113
Query: 61 RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 120
RASI+VGS+SFF+G ++NA AV+I ML++GRIFLG+GIGFGNQAVPLYLSEMAPAKIRGA
Sbjct: 114 RASILVGSISFFLGGVINAAAVNIEMLIIGRIFLGVGIGFGNQAVPLYLSEMAPAKIRGA 173
Query: 121 VNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLV 180
VNQLFQLTTCLGIL+AN INYGT+KIHPWGWRLSLGLATVPATLMF+GGLFLPETPNSLV
Sbjct: 174 VNQLFQLTTCLGILIANFINYGTDKIHPWGWRLSLGLATVPATLMFIGGLFLPETPNSLV 233
Query: 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALG 240
EQGK++E R VLEK+RGT VDAEF DLIDASN ARAIK+PF+NL K+KNRPQLVIGALG
Sbjct: 234 EQGKMEEGRAVLEKIRGTKKVDAEFDDLIDASNEARAIKHPFKNLLKRKNRPQLVIGALG 293
Query: 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRA 300
IPAFQQLTGMNSILFYAPV+FQSLGFGS AALYSS IT AL +A ISM VDKFGRRA
Sbjct: 294 IPAFQQLTGMNSILFYAPVMFQSLGFGSDAALYSSTITSGALVVATFISMLLVDKFGRRA 353
Query: 301 FFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLV 360
FFLEAG EMI ++ VA+TLAL+FG+G+ LPKGIGIFLVIVIC+FVLAYGRSWGPLGWLV
Sbjct: 354 FFLEAGAEMICCLIAVAVTLALKFGQGEELPKGIGIFLVIVICIFVLAYGRSWGPLGWLV 413
Query: 361 PSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYF 420
PSELFPLE RSAGQS+VVC N+LFTALIAQ FLAALCHL++GIFL+F GL+VIMS+FI+F
Sbjct: 414 PSELFPLETRSAGQSMVVCVNMLFTALIAQCFLAALCHLRYGIFLLFAGLIVIMSSFIFF 473
Query: 421 FLPETKQVPIEEIYLLFENHWFWKRIVKEDNGKFVE 456
LPETKQVPIEE+YLL+ENHWFWK IV ++ V
Sbjct: 474 LLPETKQVPIEEVYLLWENHWFWKIIVGKEGANGVN 509
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224142179|ref|XP_002324436.1| predicted protein [Populus trichocarpa] gi|222865870|gb|EEF03001.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/447 (83%), Positives = 411/447 (91%)
Query: 1 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR 60
MDDFL EFFP VYRRK AHL ETDYCKYD+QVLTLFTSSLYFA LVSTFGASYVTRSRGR
Sbjct: 52 MDDFLVEFFPDVYRRKHAHLRETDYCKYDDQVLTLFTSSLYFAALVSTFGASYVTRSRGR 111
Query: 61 RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 120
RASI+VG+VSFF GA++NA A +I+ML++GR FLG GIGF NQAVPLYLSEMAPAK+RGA
Sbjct: 112 RASILVGAVSFFTGALVNAFAKNITMLIIGRCFLGAGIGFSNQAVPLYLSEMAPAKVRGA 171
Query: 121 VNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLV 180
VNQLFQLTTCLGILVAN INYGTEKIHPWGWRLSLGLATVPAT+MFVGG+FLPETPNSLV
Sbjct: 172 VNQLFQLTTCLGILVANFINYGTEKIHPWGWRLSLGLATVPATIMFVGGIFLPETPNSLV 231
Query: 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALG 240
EQGKL+EAR+VLEKVRGT VDAEF+DL+DASN ARAIK+PFRNL +KNRPQ +IGAL
Sbjct: 232 EQGKLEEARRVLEKVRGTTRVDAEFADLVDASNEARAIKHPFRNLLARKNRPQFIIGALA 291
Query: 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRA 300
IPAFQQLTGMNSILFYAPV+FQSLGF + A+L+SSVIT AL + ALISMA VDKFGRRA
Sbjct: 292 IPAFQQLTGMNSILFYAPVLFQSLGFSNDASLFSSVITNAALVVGALISMALVDKFGRRA 351
Query: 301 FFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLV 360
FFLEAGTEM M+ V ITLAL+FGEGKP+PKGIGIFLVI ICLFVLAYGRSWGPLGWLV
Sbjct: 352 FFLEAGTEMFFVMIAVTITLALKFGEGKPIPKGIGIFLVIAICLFVLAYGRSWGPLGWLV 411
Query: 361 PSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYF 420
PSELFPLEMRSAGQSVVVC N++FTALIAQ FL +LCHLK+GIFL+FGGL+ IMSAFI+F
Sbjct: 412 PSELFPLEMRSAGQSVVVCVNMIFTALIAQCFLISLCHLKYGIFLLFGGLIFIMSAFIFF 471
Query: 421 FLPETKQVPIEEIYLLFENHWFWKRIV 447
FLPETKQVPIEE+YLL++NHWFWKRIV
Sbjct: 472 FLPETKQVPIEEVYLLWQNHWFWKRIV 498
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255589859|ref|XP_002535110.1| sugar transporter, putative [Ricinus communis] gi|223524019|gb|EEF27275.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/447 (80%), Positives = 406/447 (90%)
Query: 1 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR 60
MDDFLKEFFP V+ +K AHL ETDYCKYDNQ+LTLF+SSLYFA L +TFGAS VTR+RGR
Sbjct: 53 MDDFLKEFFPTVFEKKHAHLHETDYCKYDNQILTLFSSSLYFAALFATFGASVVTRTRGR 112
Query: 61 RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 120
RASI+VGSVSFFIGAI+NA A +I+ML++GR LG GIGFGNQAVPLYLSEMAPAKIRGA
Sbjct: 113 RASILVGSVSFFIGAIVNAFAKNIAMLIIGRCLLGGGIGFGNQAVPLYLSEMAPAKIRGA 172
Query: 121 VNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLV 180
VNQLFQLTTCLGILVAN INYGTEKIHPWGWRLSLGLA +PAT+MFVGGLFLPETPNSL+
Sbjct: 173 VNQLFQLTTCLGILVANFINYGTEKIHPWGWRLSLGLAALPATIMFVGGLFLPETPNSLI 232
Query: 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALG 240
EQGKL+E R++LEKVRGT VDAEF DL+DASNAARAIK+PF+NL K+KNRPQLVIGALG
Sbjct: 233 EQGKLEEGRRILEKVRGTTQVDAEFDDLVDASNAARAIKHPFKNLLKRKNRPQLVIGALG 292
Query: 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRA 300
IPAFQQLTG NSILFYAPVIFQSLGF +GA+LYS+VIT AL + ALISM+FVDKFGRRA
Sbjct: 293 IPAFQQLTGNNSILFYAPVIFQSLGFSNGASLYSAVITNSALVVGALISMSFVDKFGRRA 352
Query: 301 FFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLV 360
FFLEAG EM MV V ITLALEFGEGKP+ KG GIFLVI+ICLFVLAYGRSWGPLGWLV
Sbjct: 353 FFLEAGAEMFFIMVAVGITLALEFGEGKPIAKGTGIFLVIIICLFVLAYGRSWGPLGWLV 412
Query: 361 PSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYF 420
PSE+FPLE RSAGQSVVVC N++FTAL+AQ FL +LCHLK+GIFL+F L+++MSAFI+F
Sbjct: 413 PSEIFPLETRSAGQSVVVCVNMIFTALVAQCFLVSLCHLKYGIFLLFAALILVMSAFIFF 472
Query: 421 FLPETKQVPIEEIYLLFENHWFWKRIV 447
LPETKQVPIEE++LL++NHWFW +IV
Sbjct: 473 LLPETKQVPIEEMHLLWQNHWFWGKIV 499
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147799431|emb|CAN76865.1| hypothetical protein VITISV_012307 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/448 (79%), Positives = 406/448 (90%)
Query: 1 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR 60
MDDFLK FFPKVYRRKQ HL ETDYCKY++Q+LTLFTSSLYFAGLVSTF AS+VTR +GR
Sbjct: 53 MDDFLKRFFPKVYRRKQEHLKETDYCKYESQILTLFTSSLYFAGLVSTFAASHVTRKKGR 112
Query: 61 RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 120
+ASI+VGS+SFF+GA+LNA AV+I+ML++GRI LG+GIGFGNQAVPLYLSEM+PAKIRGA
Sbjct: 113 KASILVGSISFFLGAVLNAAAVNIAMLIIGRILLGVGIGFGNQAVPLYLSEMSPAKIRGA 172
Query: 121 VNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLV 180
VNQLFQL+TCLGILVAN INY T+K+HPWGWRLSLGLATVPAT+MF+GGL LPETPNSLV
Sbjct: 173 VNQLFQLSTCLGILVANFINYETDKLHPWGWRLSLGLATVPATVMFLGGLALPETPNSLV 232
Query: 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALG 240
EQGK +EARKVLEKVRGT+ ++AEF+DL+DAS AA+AIK+PFRNL K++NRPQL+IGALG
Sbjct: 233 EQGKFEEARKVLEKVRGTSKIEAEFADLVDASKAAQAIKHPFRNLLKRRNRPQLIIGALG 292
Query: 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRA 300
IPAFQQLTGMNSILFYAPVIFQSLGFGS A+LYSS+IT AL +A+LISMAFVD++GRR
Sbjct: 293 IPAFQQLTGMNSILFYAPVIFQSLGFGSNASLYSSLITSGALVLASLISMAFVDRWGRRK 352
Query: 301 FFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLV 360
FFLEAG EMI YMV VAITLALEFG+GK LPKG FLVI+I LFVLAYGRSWGPLGWLV
Sbjct: 353 FFLEAGCEMICYMVAVAITLALEFGQGKTLPKGTSYFLVIIISLFVLAYGRSWGPLGWLV 412
Query: 361 PSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYF 420
PSELFPLE RSAGQS+VVC NL FTALIAQ FL +LCHL++GIFLVF GL++IMS FIYF
Sbjct: 413 PSELFPLETRSAGQSMVVCVNLFFTALIAQCFLVSLCHLRYGIFLVFAGLIIIMSCFIYF 472
Query: 421 FLPETKQVPIEEIYLLFENHWFWKRIVK 448
LPETKQVPIEE+ L+ H WK+I +
Sbjct: 473 LLPETKQVPIEEVCYLWSKHPIWKKIER 500
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445142|ref|XP_002283960.1| PREDICTED: sugar transport protein 14 [Vitis vinifera] gi|297738778|emb|CBI28023.3| unnamed protein product [Vitis vinifera] gi|310877808|gb|ADP37135.1| putative hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/459 (78%), Positives = 411/459 (89%), Gaps = 3/459 (0%)
Query: 1 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR 60
MDDFLK FFPKVYRRKQ HL ETDYCKY++Q+LTLFTSSLYFAGLVSTF AS+VTR +GR
Sbjct: 53 MDDFLKRFFPKVYRRKQEHLKETDYCKYESQILTLFTSSLYFAGLVSTFAASHVTRKKGR 112
Query: 61 RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 120
+ASI+VGS+SFF+GA+LNA AV+I+ML++GRI LG+GIGFGNQAVPLYLSEM+PAKIRGA
Sbjct: 113 KASILVGSISFFLGAVLNAAAVNIAMLIIGRILLGVGIGFGNQAVPLYLSEMSPAKIRGA 172
Query: 121 VNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLV 180
VNQLFQL+TCLGILVAN INY T+K+HPWGWRLSLGLATVPAT+MF+GGL LPETPNSLV
Sbjct: 173 VNQLFQLSTCLGILVANFINYETDKLHPWGWRLSLGLATVPATVMFLGGLALPETPNSLV 232
Query: 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALG 240
EQGK +EARKVLEKVRGT+ ++AEF+DL+DAS AA+AIK+PFRNL K++NRPQL+IGALG
Sbjct: 233 EQGKFEEARKVLEKVRGTSKIEAEFADLVDASKAAQAIKHPFRNLLKRRNRPQLIIGALG 292
Query: 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRA 300
IPAFQQLTGMNSILFYAPVIFQSLGFGS A+LYSS+IT AL +A+LISMAFVD++GRR
Sbjct: 293 IPAFQQLTGMNSILFYAPVIFQSLGFGSNASLYSSLITSGALVLASLISMAFVDRWGRRK 352
Query: 301 FFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLV 360
FFLEAG EMI YMV VAITLALEFG+GK LPKG FLVI+I LFVLAYGRSWGPLGWLV
Sbjct: 353 FFLEAGCEMICYMVAVAITLALEFGQGKTLPKGTSYFLVIIISLFVLAYGRSWGPLGWLV 412
Query: 361 PSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYF 420
PSELFPLE RSAGQS+VVC NL FTALIAQ FL +LCHL++GIFLVF GL++IMS FIYF
Sbjct: 413 PSELFPLETRSAGQSMVVCVNLFFTALIAQCFLVSLCHLRYGIFLVFAGLIIIMSCFIYF 472
Query: 421 FLPETKQVPIEEIYLLFENHWFWKRIVKED---NGKFVE 456
LPETKQVPIEE+ L+ H WK+IV ++ GK E
Sbjct: 473 LLPETKQVPIEEVCYLWSKHPIWKKIVGDEPRTEGKSAE 511
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356495228|ref|XP_003516481.1| PREDICTED: sugar transport protein 14-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/451 (78%), Positives = 402/451 (89%)
Query: 1 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR 60
MDDFL EFFPKVY +K AHL ETDYCKYD+Q LTLFTSSLYFA LVSTFGAS VT+++GR
Sbjct: 53 MDDFLIEFFPKVYEKKHAHLVETDYCKYDDQTLTLFTSSLYFAALVSTFGASSVTKNKGR 112
Query: 61 RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 120
+ASI+ GSVSFFIGAILNA A +ISML++GRI LG+GIGFGNQAVPLYLSEMAP+K+RGA
Sbjct: 113 KASILAGSVSFFIGAILNAAARNISMLIIGRILLGVGIGFGNQAVPLYLSEMAPSKVRGA 172
Query: 121 VNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLV 180
VNQLFQLTTCLGIL+ANL+NYGTEK+HPWGWRLSLGLAT PA LMF+GGLF PETPNSLV
Sbjct: 173 VNQLFQLTTCLGILIANLVNYGTEKLHPWGWRLSLGLATFPAVLMFIGGLFCPETPNSLV 232
Query: 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALG 240
EQG+ DE R VLEKVRGT NVDAEF DLI+AS A++IKNPF+NL +KNRPQL+IGA+
Sbjct: 233 EQGRFDEGRAVLEKVRGTPNVDAEFDDLIEASREAKSIKNPFQNLLLRKNRPQLIIGAVA 292
Query: 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRA 300
IPAFQQLTG NSILFYAPVIFQ+LGFGSGA+LYSSVIT +AL +A LISMAFVD+FGRRA
Sbjct: 293 IPAFQQLTGNNSILFYAPVIFQTLGFGSGASLYSSVITSVALVVATLISMAFVDRFGRRA 352
Query: 301 FFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLV 360
FFLEAG EMII MV +AI L++EFG+GK L G+ IFLVIVI LFVLAYGRSWGPLGWLV
Sbjct: 353 FFLEAGAEMIICMVAMAIVLSVEFGKGKELSYGVSIFLVIVIFLFVLAYGRSWGPLGWLV 412
Query: 361 PSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYF 420
PSELFPLE+RSA QSVVVC N++FTAL+AQ FL +LCHLK+GIFL+F +V+MS F++F
Sbjct: 413 PSELFPLEIRSAAQSVVVCVNMIFTALVAQFFLVSLCHLKYGIFLLFAAFIVLMSCFVFF 472
Query: 421 FLPETKQVPIEEIYLLFENHWFWKRIVKEDN 451
LPETKQVPIEEIYLLFE HWFWKR+V E N
Sbjct: 473 LLPETKQVPIEEIYLLFEKHWFWKRVVGEGN 503
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529642|ref|XP_003533398.1| PREDICTED: sugar transport protein 14-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/449 (78%), Positives = 400/449 (89%)
Query: 1 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR 60
MDDFL +FFPKVY +K AHL ETDYCKYD+Q+LTLFTSSLYFA LVSTFGAS VT+++GR
Sbjct: 53 MDDFLIQFFPKVYEKKHAHLAETDYCKYDDQILTLFTSSLYFAALVSTFGASSVTKTKGR 112
Query: 61 RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 120
+ASI+ GSVSFFIGAILNA A I+ML+LGRI LG+GIGFGNQAVPLYLSEMAPAK+RGA
Sbjct: 113 KASILAGSVSFFIGAILNAAAKSITMLILGRILLGVGIGFGNQAVPLYLSEMAPAKVRGA 172
Query: 121 VNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLV 180
VNQLFQLTTCLGIL+ANL+NYGTEKIHPWGWRLSLGLATVPA MF+GG PETPNSLV
Sbjct: 173 VNQLFQLTTCLGILIANLVNYGTEKIHPWGWRLSLGLATVPAVFMFIGGCLCPETPNSLV 232
Query: 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALG 240
EQG+ DE R VLEKVRGT NVDAEF DLI+AS A++IKNPF+NL +KNRPQ++IGA
Sbjct: 233 EQGRFDEGRAVLEKVRGTPNVDAEFDDLIEASREAKSIKNPFQNLLLRKNRPQVIIGAFA 292
Query: 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRA 300
IPAFQQLTG NSILFYAPVIFQ+LGFGSGA+LYSSVIT +AL +A LISMAFVDKFGRRA
Sbjct: 293 IPAFQQLTGNNSILFYAPVIFQTLGFGSGASLYSSVITSVALVVATLISMAFVDKFGRRA 352
Query: 301 FFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLV 360
FFLEAG EMII +V +AI L++EFG+GK L G+ IFLVIVI LFVLAYGRSWGPLGWLV
Sbjct: 353 FFLEAGAEMIICLVAMAIVLSVEFGKGKELSYGVSIFLVIVIFLFVLAYGRSWGPLGWLV 412
Query: 361 PSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYF 420
PSELFPLE+RSA QSVVVC N++FTAL+AQ FL +LCHLK+GIFL+F L+V+MS F++F
Sbjct: 413 PSELFPLEIRSAAQSVVVCVNMIFTALVAQFFLVSLCHLKYGIFLLFAALIVLMSCFVFF 472
Query: 421 FLPETKQVPIEEIYLLFENHWFWKRIVKE 449
LPETKQVPIEEIYLLFENHWFWKR+V E
Sbjct: 473 LLPETKQVPIEEIYLLFENHWFWKRVVGE 501
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357500557|ref|XP_003620567.1| Sugar transport protein [Medicago truncatula] gi|355495582|gb|AES76785.1| Sugar transport protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/451 (78%), Positives = 402/451 (89%)
Query: 1 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR 60
MDDFL EFFP VY RK L ETDYCKYD+Q+LTLFTSSLYFA LVSTFGAS +T+++GR
Sbjct: 53 MDDFLVEFFPHVYARKHEKLQETDYCKYDDQILTLFTSSLYFAALVSTFGASSLTKNKGR 112
Query: 61 RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 120
RASI+VGSVSFF GAI+NA A +I+ML++GRI LG+GIGFGNQAVPLYLSEMAPAKIRGA
Sbjct: 113 RASILVGSVSFFCGAIINAAAKNIAMLIIGRILLGIGIGFGNQAVPLYLSEMAPAKIRGA 172
Query: 121 VNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLV 180
VNQLFQLTTCLGIL+ANL+NYGTEKIHPWGWRLSLGLATVPA MF+GG+F PETPNSLV
Sbjct: 173 VNQLFQLTTCLGILIANLVNYGTEKIHPWGWRLSLGLATVPAIFMFIGGIFCPETPNSLV 232
Query: 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALG 240
EQG++DE R VLEK+RGT NVDAEF DLI+AS A++IKNPF+NL +KNRPQ +IGA+
Sbjct: 233 EQGRMDEGRVVLEKIRGTRNVDAEFDDLIEASREAKSIKNPFQNLLLRKNRPQFIIGAIC 292
Query: 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRA 300
IPAFQQLTG NSILFYAPVIFQ++GFGSGA+LYSSVIT +AL +A LISMA VDKFGRRA
Sbjct: 293 IPAFQQLTGNNSILFYAPVIFQTIGFGSGASLYSSVITSVALVLATLISMALVDKFGRRA 352
Query: 301 FFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLV 360
FFLEAGTEMII MV AI LA FG+GK L G+ IFLV+VI LFVLAYGRSWGPLGWLV
Sbjct: 353 FFLEAGTEMIICMVATAIVLATCFGDGKQLSFGVAIFLVLVIFLFVLAYGRSWGPLGWLV 412
Query: 361 PSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYF 420
PSELFPLE+RS+ QSVVVC N++FTA++AQ FL +LCHLK+GIFL+FGGL+V+MS F+YF
Sbjct: 413 PSELFPLEIRSSAQSVVVCVNMIFTAIVAQFFLVSLCHLKYGIFLLFGGLIVLMSCFVYF 472
Query: 421 FLPETKQVPIEEIYLLFENHWFWKRIVKEDN 451
LPETKQVPIEEIYLLFENHWFWK IVK++N
Sbjct: 473 LLPETKQVPIEEIYLLFENHWFWKNIVKDEN 503
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449521365|ref|XP_004167700.1| PREDICTED: sugar transport protein 14-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/453 (77%), Positives = 403/453 (88%)
Query: 1 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR 60
MDDFLK+FFPKVY RKQ H+ ETDYCKYD+Q+LTLFTSSLYFAGL+STF AS+VTR+ GR
Sbjct: 79 MDDFLKQFFPKVYNRKQLHIKETDYCKYDDQILTLFTSSLYFAGLLSTFFASHVTRNYGR 138
Query: 61 RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 120
RASI+VGSVSFF+G ++NA A++I ML++GRI LG+GIGFGNQAVPLYLSE+APAKIRG
Sbjct: 139 RASILVGSVSFFLGGLINAVAINIPMLIIGRILLGIGIGFGNQAVPLYLSEIAPAKIRGR 198
Query: 121 VNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLV 180
VNQLFQLTTCLGIL+AN INYGTEKIHPWGWRLSLGLAT PA +MF+GGLFLPETPNSLV
Sbjct: 199 VNQLFQLTTCLGILIANFINYGTEKIHPWGWRLSLGLATFPAAMMFIGGLFLPETPNSLV 258
Query: 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALG 240
EQGKL+EAR+VLEK+RGT N++AEF+DL+DASN ARA+KNPFRNL ++KNRPQLVIGA+G
Sbjct: 259 EQGKLEEARRVLEKIRGTTNIEAEFADLVDASNQARAVKNPFRNLLRRKNRPQLVIGAIG 318
Query: 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRA 300
IPAFQQLTG NSILFYAPVI QSLGFGS A+LYSS T AL +AALISM VDKFGRR
Sbjct: 319 IPAFQQLTGNNSILFYAPVILQSLGFGSAASLYSSAFTSGALVVAALISMFLVDKFGRRK 378
Query: 301 FFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLV 360
FFLEAG EM +YM+ VAITL L FG+GK L KG+ I LV +I LFVLAYGRSWGPLGWLV
Sbjct: 379 FFLEAGFEMFVYMIAVAITLKLNFGQGKELSKGVSILLVCLIWLFVLAYGRSWGPLGWLV 438
Query: 361 PSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYF 420
PSELFPLE RSAGQS+VVC NLLFTALIAQ FLAA+CHL++GIF++F L+ +MS FIYF
Sbjct: 439 PSELFPLETRSAGQSIVVCVNLLFTALIAQCFLAAMCHLRYGIFILFAALIFLMSCFIYF 498
Query: 421 FLPETKQVPIEEIYLLFENHWFWKRIVKEDNGK 453
LPETKQVPIEEIYLL+ENH FWK V++D+ +
Sbjct: 499 LLPETKQVPIEEIYLLWENHPFWKSFVRDDDHQ 531
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 459 | ||||||
| TAIR|locus:2195995 | 504 | STP14 "sugar transport protein | 0.978 | 0.890 | 0.763 | 3.7e-190 | |
| TAIR|locus:2132213 | 513 | STP7 "sugar transporter protei | 0.971 | 0.869 | 0.611 | 1.8e-149 | |
| TAIR|locus:2151074 | 526 | MSS1 "AT5G26340" [Arabidopsis | 0.997 | 0.870 | 0.566 | 1.9e-138 | |
| TAIR|locus:2092221 | 514 | AT3G19940 [Arabidopsis thalian | 0.978 | 0.873 | 0.526 | 5.7e-130 | |
| TAIR|locus:2011957 | 517 | STP9 "sugar transporter 9" [Ar | 0.978 | 0.868 | 0.525 | 1.7e-128 | |
| TAIR|locus:2202044 | 522 | STP1 "AT1G11260" [Arabidopsis | 0.991 | 0.871 | 0.527 | 2.2e-128 | |
| TAIR|locus:2166781 | 514 | STP11 "sugar transporter 11" [ | 0.991 | 0.885 | 0.519 | 4.2e-127 | |
| TAIR|locus:2092286 | 514 | STP4 "sugar transporter 4" [Ar | 0.973 | 0.869 | 0.504 | 1.5e-122 | |
| TAIR|locus:2083003 | 507 | STP6 "sugar transporter 6" [Ar | 0.989 | 0.895 | 0.482 | 6.7e-120 | |
| TAIR|locus:2179734 | 507 | AT5G26250 [Arabidopsis thalian | 0.989 | 0.895 | 0.485 | 4.7e-119 |
| TAIR|locus:2195995 STP14 "sugar transport protein 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1843 (653.8 bits), Expect = 3.7e-190, P = 3.7e-190
Identities = 343/449 (76%), Positives = 395/449 (87%)
Query: 1 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR 60
MDDFLKEFFP +Y+RKQ HL ETDYCKYDNQ+LTLFTSSLYFAGL+STFGASYVTR GR
Sbjct: 53 MDDFLKEFFPGIYKRKQMHLNETDYCKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGR 112
Query: 61 RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 120
R SI+VGSVSFF+G ++NA A +I ML+LGRIFLG+GIGFGNQAVPLYLSEMAPAKIRG
Sbjct: 113 RGSILVGSVSFFLGGVINAAAKNILMLILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGT 172
Query: 121 VNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLV 180
VNQLFQLTTC+GILVANLINY TE+IHPWGWRLSLGLATVPA LMF+GGL LPETPNSLV
Sbjct: 173 VNQLFQLTTCIGILVANLINYKTEQIHPWGWRLSLGLATVPAILMFLGGLVLPETPNSLV 232
Query: 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALG 240
EQGKL++A+ VL KVRGT N++AEF DL++AS+AARA+KNPFRNL ++NRPQLVIGA+G
Sbjct: 233 EQGKLEKAKAVLIKVRGTNNIEAEFQDLVEASDAARAVKNPFRNLLARRNRPQLVIGAIG 292
Query: 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRA 300
+PAFQQLTGMNSILFYAPV+FQSLGFG A+L SS IT AL +AA++SM DKFGRR
Sbjct: 293 LPAFQQLTGMNSILFYAPVMFQSLGFGGSASLISSTITNAALVVAAIMSMYSADKFGRRF 352
Query: 301 FFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLV 360
LEA EM YMV+V +TLAL+FGEGK LPK +G+ LV++ICLFVLAYGRSWGP+GWLV
Sbjct: 353 LLLEASVEMFCYMVVVGVTLALKFGEGKELPKSLGLILVVLICLFVLAYGRSWGPMGWLV 412
Query: 361 PSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYF 420
PSELFPLE RSAGQSVVVC NL FTALIAQ FL +LCHLK+GIFL+F GL++ M +F+YF
Sbjct: 413 PSELFPLETRSAGQSVVVCVNLFFTALIAQCFLVSLCHLKYGIFLLFAGLILGMGSFVYF 472
Query: 421 FLPETKQVPIEEIYLLFENHWFWKRIVKE 449
LPETKQVPIEE+YLL+ HW WK+ V++
Sbjct: 473 LLPETKQVPIEEVYLLWRQHWLWKKYVED 501
|
|
| TAIR|locus:2132213 STP7 "sugar transporter protein 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1459 (518.7 bits), Expect = 1.8e-149, P = 1.8e-149
Identities = 275/450 (61%), Positives = 351/450 (78%)
Query: 1 MDDFLKEFFPKVY-RRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRG 59
MD+FL+EFF VY ++KQAH E++YCKYDNQ L FTSSLY AGLVST AS +TR+ G
Sbjct: 54 MDEFLEEFFHTVYEKKKQAH--ESNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYG 111
Query: 60 RRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRG 119
RRASI+ G +SF IG+ LNA AV+++MLL GRI LG+GIGFGNQAVPLYLSE+AP +RG
Sbjct: 112 RRASIVCGGISFLIGSGLNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRG 171
Query: 120 AVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSL 179
+N +FQL T +GI AN++NYGT+++ PWGWRLSLGLA PA LM +GG FLPETPNSL
Sbjct: 172 GLNMMFQLATTIGIFTANMVNYGTQQLKPWGWRLSLGLAAFPALLMTLGGYFLPETPNSL 231
Query: 180 VEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGAL 239
VE+G + R+VL K+RGT NV+AE D++DAS A +IK+PFRN+ +K++RPQLV+ A+
Sbjct: 232 VERGLTERGRRVLVKLRGTENVNAELQDMVDASELANSIKHPFRNILQKRHRPQLVM-AI 290
Query: 240 GIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRR 299
+P FQ LTG+NSILFYAPV+FQ++GFG A+LYSS +TG L ++ IS+ VD+ GRR
Sbjct: 291 CMPMFQILTGINSILFYAPVLFQTMGFGGNASLYSSALTGAVLVLSTFISIGLVDRLGRR 350
Query: 300 AFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWL 359
A + G +MII VIVA+ L ++FG+ + L KG + +VI ICLFV+A+G SWGPLGW
Sbjct: 351 ALLITGGIQMIICQVIVAVILGVKFGDNQELSKGYSVIVVIFICLFVVAFGWSWGPLGWT 410
Query: 360 VPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIY 419
+PSE+FPLE RSAGQS+ V NLLFT +IAQAFL LC KFGIFL F G V +M+ F+Y
Sbjct: 411 IPSEIFPLETRSAGQSITVAVNLLFTFIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVY 470
Query: 420 FFLPETKQVPIEEIYLLFENHWFWKRIVKE 449
F LPETK VPIEE+ LL+ HWFWK+++ +
Sbjct: 471 FLLPETKGVPIEEMTLLWSKHWFWKKVLPD 500
|
|
| TAIR|locus:2151074 MSS1 "AT5G26340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1355 (482.0 bits), Expect = 1.9e-138, P = 1.9e-138
Identities = 263/464 (56%), Positives = 342/464 (73%)
Query: 1 MDDFLKEFFPKVYRRKQAHLT-ETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRG 59
M DFL++FFP VYR+ A +++YCKYDNQ L LFTSSLY AGL +TF ASY TR+ G
Sbjct: 50 MPDFLEKFFPVVYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLG 109
Query: 60 RRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRG 119
RR ++++ V F IG LNA A ++ML+ GRI LG G+GF NQAVPL+LSE+AP +IRG
Sbjct: 110 RRLTMLIAGVFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRG 169
Query: 120 AVNQLFQLTTCLGILVANLINYGTEKIHP-WGWRLSLGLATVPATLMFVGGLFLPETPNS 178
+N LFQL +GIL ANL+NYGT KI WGWRLSLGLA +PA L+ VG L + ETPNS
Sbjct: 170 GLNILFQLNVTIGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNS 229
Query: 179 LVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGA 238
LVE+G+LDE + VL ++RGT NV+ EF+DL++AS A+ +K+PFRNL +++NRPQLVI A
Sbjct: 230 LVERGRLDEGKAVLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVI-A 288
Query: 239 LGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGR 298
+ + FQQ TG+N+I+FYAPV+F +LGFGS A+LYS+V+TG ++ L+S+ VDK GR
Sbjct: 289 VALQIFQQCTGINAIMFYAPVLFSTLGFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGR 348
Query: 299 RAFFLEAGTEMIIYMVIVAITLALEFGEGKP-LPKGIGIFLVIVICLFVLAYGRSWGPLG 357
R LEAG +M V++AI L ++ + L KG I +V++IC +V A+ SWGPLG
Sbjct: 349 RVLLLEAGVQMFFSQVVIAIILGVKVTDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLG 408
Query: 358 WLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAF 417
WL+PSE FPLE RSAGQSV VC NLLFT +IAQAFL+ LCH KFGIF+ F V+IMS F
Sbjct: 409 WLIPSETFPLETRSAGQSVTVCVNLLFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVF 468
Query: 418 IYFFLPETKQVPIEEIY-LLFENHWFWKRIVKEDNG-KFVEPVK 459
+ F LPETK +PIEE+ +++ HWFW R + + N +FV K
Sbjct: 469 VMFLLPETKNIPIEEMTERVWKKHWFWARFMDDHNDHEFVNGEK 512
|
|
| TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1275 (453.9 bits), Expect = 5.7e-130, P = 5.7e-130
Identities = 238/452 (52%), Positives = 330/452 (73%)
Query: 1 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR 60
M++FL +FFP+V + + +T YCK+DNQ+L LFTSSLY A LV++F AS +TR GR
Sbjct: 52 MEEFLTKFFPQVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGR 111
Query: 61 RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 120
+ S+ +G ++F IGA+ NA AV++SML++GR+ LG+G+GF NQ+ P+YLSEMAPAKIRGA
Sbjct: 112 KVSMFIGGLAFLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGA 171
Query: 121 VNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLV 180
+N FQ+ +GILVANLINYGT K+ GWR+SLGLA VPA +M +G LP+TPNS++
Sbjct: 172 LNIGFQMAITIGILVANLINYGTSKMAQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSML 231
Query: 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALG 240
E+GK +EA+++L+K+RG NVD EF DLIDA AA+ ++NP++N+ + K RP L+ +
Sbjct: 232 ERGKNEEAKQMLKKIRGADNVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCS-A 290
Query: 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRA 300
IP FQQ+TG+N I+FYAPV+F++LGFG AAL S+VITG+ ++ +S+ VD++GRR
Sbjct: 291 IPFFQQITGINVIMFYAPVLFKTLGFGDDAALMSAVITGVVNMLSTFVSIYAVDRYGRRL 350
Query: 301 FFLEAGTEMIIYMVIVAITLALEFG-EGK-PLPKGIGIFLVIVICLFVLAYGRSWGPLGW 358
FLE G +M I ++V + FG G L +++ IC++V + SWGPLGW
Sbjct: 351 LFLEGGIQMFICQLLVGSFIGARFGTSGTGTLTPATADWILAFICVYVAGFAWSWGPLGW 410
Query: 359 LVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFI 418
LVPSE+ PLE+R AGQ++ V N+ FT LI Q FL LCH+KFG+F F +V IM+ FI
Sbjct: 411 LVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFASMVAIMTVFI 470
Query: 419 YFFLPETKQVPIEEIYLLFENHWFWKRIVKED 450
YF LPETK VPIEE+ +++ HWFWK+ + ED
Sbjct: 471 YFLLPETKGVPIEEMGRVWKQHWFWKKYIPED 502
|
|
| TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1261 (449.0 bits), Expect = 1.7e-128, P = 1.7e-128
Identities = 238/453 (52%), Positives = 331/453 (73%)
Query: 1 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR 60
M++FL +FFP+V ++ ET YCK+DNQ+L LFTSSLY A L S+F AS VTR GR
Sbjct: 52 MEEFLSKFFPEVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGR 111
Query: 61 RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 120
+ S+ VG V+F IG++ NA A +++ML++GR+ LG+G+GF NQ+ P+YLSEMAPAKIRGA
Sbjct: 112 KISMFVGGVAFLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGA 171
Query: 121 VNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLV 180
+N FQ+ +GIL+ANLINYGT ++ GWR+SLGLA VPA +M +G LP+TPNS++
Sbjct: 172 LNIGFQMAITIGILIANLINYGTSQMAKNGWRVSLGLAAVPAVIMVIGSFVLPDTPNSML 231
Query: 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKK-KNRPQLVIGAL 239
E+GK ++AR++L+K+RG NVD EF DL DA AA+ + NP++N+F++ K RP LV +
Sbjct: 232 ERGKYEQAREMLQKIRGADNVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFCS- 290
Query: 240 GIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRR 299
IP FQQ+TG+N I+FYAPV+F++LGF A+L S+VITG ++ L+S+ VD++GRR
Sbjct: 291 AIPFFQQITGINVIMFYAPVLFKTLGFADDASLISAVITGAVNVVSTLVSIYAVDRYGRR 350
Query: 300 AFFLEAGTEMIIYMVIVAITLALEFGE-GK-PLPKGIGIFLVIVICLFVLAYGRSWGPLG 357
FLE G +MI+ ++V + ++FG G L +++ ICL+V + SWGPLG
Sbjct: 351 ILFLEGGIQMIVSQIVVGTLIGMKFGTTGSGTLTPATADWILAFICLYVAGFAWSWGPLG 410
Query: 358 WLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAF 417
WLVPSE+ PLE+R AGQ++ V N+ FT LI Q FL LCH+KFG+F FGG+V +M+ F
Sbjct: 411 WLVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFGGMVAVMTVF 470
Query: 418 IYFFLPETKQVPIEEIYLLFENHWFWKRIVKED 450
IYF LPETK VPIEE+ +++ H FWKR + +D
Sbjct: 471 IYFLLPETKGVPIEEMGRVWKQHPFWKRYMPDD 503
|
|
| TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1260 (448.6 bits), Expect = 2.2e-128, P = 2.2e-128
Identities = 243/461 (52%), Positives = 330/461 (71%)
Query: 1 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR 60
M FLK FFP VYR++Q + YC+YD+ LT+FTSSLY A L+S+ AS VTR GR
Sbjct: 50 MPSFLKRFFPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGR 109
Query: 61 RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 120
R S++ G + F GA++N A H+ ML++GRI LG GIGF NQAVPLYLSEMAP K RGA
Sbjct: 110 RLSMLFGGILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGA 169
Query: 121 VNQLFQLTTCLGILVANLINYGTEKIHP-WGWRLSLGLATVPATLMFVGGLFLPETPNSL 179
+N FQL+ +GILVA ++NY KI WGWRLSLG A VPA ++ +G L LP+TPNS+
Sbjct: 170 LNIGFQLSITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSM 229
Query: 180 VEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGAL 239
+E+G+ +EA+ L ++RG +V EF DL+ AS +++I++P+RNL ++K RP L + +
Sbjct: 230 IERGQHEEAKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVM 289
Query: 240 GIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRR 299
IP FQQLTG+N I+FYAPV+F ++GF + A+L S+V+TG A L+S+ VD++GRR
Sbjct: 290 -IPFFQQLTGINVIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRR 348
Query: 300 AFFLEAGTEMIIYMVIVAITLALEFG-EGKP--LPKGIGIFLVIVICLFVLAYGRSWGPL 356
FLE GT+M+I +VA + +FG +G P LPK I +V IC++V + SWGPL
Sbjct: 349 FLFLEGGTQMLICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPL 408
Query: 357 GWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSA 416
GWLVPSE+FPLE+RSA QS+ V N++FT +IAQ FL LCHLKFG+FLVF VV+MS
Sbjct: 409 GWLVPSEIFPLEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSI 468
Query: 417 FIYFFLPETKQVPIEEIYLLFENHWFWKRIVKE-DNGKFVE 456
F+Y FLPETK +PIEE+ ++ +HW+W R V++ + G +E
Sbjct: 469 FVYIFLPETKGIPIEEMGQVWRSHWYWSRFVEDGEYGNALE 509
|
|
| TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1248 (444.4 bits), Expect = 4.2e-127, P = 4.2e-127
Identities = 239/460 (51%), Positives = 338/460 (73%)
Query: 1 MDDFLKEFFPKVYRRKQAHL-TETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRG 59
M+DFL +FFP V R+ Q ET+YCKYDN++LTLFTSSLY A L ++F AS +TR G
Sbjct: 51 MEDFLTKFFPDVLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFG 110
Query: 60 RRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRG 119
R+ S+++GS++F GA+LN A+++ ML++GR+FLG+G+GF NQ+VPLYLSEMAPAKIRG
Sbjct: 111 RKVSMVIGSLAFLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRG 170
Query: 120 AVNQLFQLTTCLGILVANLINYGTEKIHPW-GWRLSLGLATVPATLMFVGGLFLPETPNS 178
A+N FQL +GIL AN++NY T K+ GWRLSLGLA VPA +M VG FLP+TPNS
Sbjct: 171 ALNIGFQLAITIGILAANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNS 230
Query: 179 LVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGA 238
++E+G ++A+++L+K+RGT V+ EF++L +A AA+ +K+P+ N+ + + RPQL
Sbjct: 231 ILERGNKEKAKEMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCT 290
Query: 239 LGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGR 298
IP FQQLTG+N I+FYAPV+F+++GFG+ A+L S+VITG+ ++ ++S+ VDKFGR
Sbjct: 291 F-IPFFQQLTGINVIMFYAPVLFKTIGFGNDASLISAVITGLVNVLSTIVSIYSVDKFGR 349
Query: 299 RAFFLEAGTEMIIYMVIVAITLALEFG-EGKPLPKGIGIFLVI-VICLFVLAYGRSWGPL 356
RA FL+ G +MI+ + V + +FG G+ G+ +++ +ICL+V + SWGPL
Sbjct: 350 RALFLQGGFQMIVTQIAVGSMIGWKFGFNGEGNLSGVDADIILALICLYVAGFAWSWGPL 409
Query: 357 GWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSA 416
GWLVPSE+ PLE+RSAGQS+ V N+ FT I Q FL LCH+KFG+F F G+V+IM+
Sbjct: 410 GWLVPSEICPLEIRSAGQSLNVSVNMFFTFFIGQFFLTMLCHMKFGLFYFFAGMVLIMTI 469
Query: 417 FIYFFLPETKQVPIEEIYLLFENHWFWKRIVKEDNGKFVE 456
FIYF LPETK VPIEE+ +++ H +W + D+G V+
Sbjct: 470 FIYFLLPETKGVPIEEMGKVWKEHRYWGKYSNNDDGDDVD 509
|
|
| TAIR|locus:2092286 STP4 "sugar transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1205 (429.2 bits), Expect = 1.5e-122, P = 1.5e-122
Identities = 229/454 (50%), Positives = 323/454 (71%)
Query: 1 MDDFLKEFFPKVYRR-KQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRG 59
M+ FL+EFFP VY++ K AH E +YC++D+Q+LTLFTSSLY A LVS+ AS +TR G
Sbjct: 50 MEPFLEEFFPYVYKKMKSAH--ENEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFG 107
Query: 60 RRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRG 119
R+ S+ +G +FFIG+ N A +I+MLL+GRI LG G+GF NQ+VP+YLSEMAP +RG
Sbjct: 108 RKWSMFLGGFTFFIGSAFNGFAQNIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRG 167
Query: 120 AVNQLFQLTTCLGILVANLINYGTEKIHP-WGWRLSLGLATVPATLMFVGGLFLPETPNS 178
A N FQ+ GI+VA +INY T ++ GWR+SLGLA VPA ++ +G L LP+TPNS
Sbjct: 168 AFNNGFQVAIIFGIVVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIGALILPDTPNS 227
Query: 179 LVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGA 238
L+E+G +EA+++L+ +RGT VD EF DLIDAS ++ +K+P++N+ + RPQL++
Sbjct: 228 LIERGYTEEAKEMLQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTC 287
Query: 239 LGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGR 298
IP FQQLTG+N I FYAPV+FQ+LGFGS A+L S+++TGI + +S+ VD+FGR
Sbjct: 288 F-IPFFQQLTGINVITFYAPVLFQTLGFGSKASLLSAMVTGIIELLCTFVSVFTVDRFGR 346
Query: 299 RAFFLEAGTEMIIYMVIVAITLALEFGEGKP--LPKGIGIFLVIVICLFVLAYGRSWGPL 356
R FL+ G +M++ + + + ++FG + K +V +IC++V + SWGPL
Sbjct: 347 RILFLQGGIQMLVSQIAIGAMIGVKFGVAGTGNIGKSDANLIVALICIYVAGFAWSWGPL 406
Query: 357 GWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSA 416
GWLVPSE+ PLE+RSA Q++ V N+ FT L+AQ FL LCH+KFG+F F VVIM+
Sbjct: 407 GWLVPSEISPLEIRSAAQAINVSVNMFFTFLVAQLFLTMLCHMKFGLFFFFAFFVVIMTI 466
Query: 417 FIYFFLPETKQVPIEEIYLLFENHWFWKRIVKED 450
FIY LPETK VPIEE+ +++ HWFW + + ++
Sbjct: 467 FIYLMLPETKNVPIEEMNRVWKAHWFWGKFIPDE 500
|
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| TAIR|locus:2083003 STP6 "sugar transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1180 (420.4 bits), Expect = 6.7e-120, P = 6.7e-120
Identities = 221/458 (48%), Positives = 321/458 (70%)
Query: 1 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR 60
MDDFLKEFFP V+ RK+ H+ E +YCKYDNQ L LFTSSLY A LV++F AS GR
Sbjct: 48 MDDFLKEFFPAVWERKK-HVHENNYCKYDNQFLQLFTSSLYLAALVASFVASATCSKLGR 106
Query: 61 RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 120
R ++ S+ F IG L A AV++ ML++GR+FLG G+GFGNQAVPL+LSE+APA++RG
Sbjct: 107 RPTMQFASIFFLIGVGLTAGAVNLVMLIIGRLFLGFGVGFGNQAVPLFLSEIAPAQLRGG 166
Query: 121 VNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLV 180
+N +FQL +GIL+AN++NY T +HP+GWR++LG A +PA ++ G L + ETP SL+
Sbjct: 167 LNIVFQLMVTIGILIANIVNYFTATVHPYGWRIALGGAGIPAVILLFGSLLIIETPTSLI 226
Query: 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALG 240
E+ K +E ++ L K+RG +++ E+ ++ A + A +K+P+R L K +RP +IG L
Sbjct: 227 ERNKNEEGKEALRKIRGVDDINDEYESIVHACDIASQVKDPYRKLLKPASRPPFIIGML- 285
Query: 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRA 300
+ FQQ TG+N+I+FYAPV+FQ++GFGS AAL S+VITG +A + + VD+ GRR
Sbjct: 286 LQLFQQFTGINAIMFYAPVLFQTVGFGSDAALLSAVITGSINVLATFVGIYLVDRTGRRF 345
Query: 301 FFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLV 360
L++ M+I +I+ I LA + G L + + +VI +C++V+ + SWGPLGWL+
Sbjct: 346 LLLQSSVHMLICQLIIGIILAKDLGVTGTLGRPQALVVVIFVCVYVMGFAWSWGPLGWLI 405
Query: 361 PSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYF 420
PSE FPLE RSAG +V V N+ FT +IAQAFL+ LC ++ GIF F G +++M F +F
Sbjct: 406 PSETFPLETRSAGFAVAVSCNMFFTFVIAQAFLSMLCGMRSGIFFFFSGWIIVMGLFAFF 465
Query: 421 FLPETKQVPIEEIY-LLFENHWFWKR-IVKEDNGKFVE 456
F+PETK + I+++ +++ HWFWKR ++ ED+ +E
Sbjct: 466 FIPETKGIAIDDMRESVWKPHWFWKRYMLPEDDHHDIE 503
|
|
| TAIR|locus:2179734 AT5G26250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1172 (417.6 bits), Expect = 4.7e-119, P = 4.7e-119
Identities = 222/457 (48%), Positives = 316/457 (69%)
Query: 1 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR 60
MDDFLKEFFP VY RK+ H E +YCKYDNQ L LFTSSLY A LV++F AS GR
Sbjct: 49 MDDFLKEFFPSVYERKK-HAHENNYCKYDNQFLQLFTSSLYLAALVASFFASATCSKLGR 107
Query: 61 RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 120
R ++ + S+ F IG L A AV+I ML++GRI LG G+GFGNQAVPL+LSE+APA++RG
Sbjct: 108 RPTMQLASIFFLIGVGLAAGAVNIYMLIIGRILLGFGVGFGNQAVPLFLSEIAPARLRGG 167
Query: 121 VNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLV 180
+N +FQL +GIL+AN++NY T IHP+GWR++LG A +PA ++ G L + ETP SL+
Sbjct: 168 LNIVFQLMVTIGILIANIVNYFTSSIHPYGWRIALGGAGIPALILLFGSLLICETPTSLI 227
Query: 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALG 240
E+ K E ++ L+K+RG +VD E+ ++ A + AR +K+P+ L K +RP VIG L
Sbjct: 228 ERNKTKEGKETLKKIRGVEDVDEEYESIVHACDIARQVKDPYTKLMKPASRPPFVIGML- 286
Query: 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRA 300
+ FQQ TG+N+I+FYAPV+FQ++GFG+ AAL S+V+TG ++ + + VDK GRR
Sbjct: 287 LQFFQQFTGINAIMFYAPVLFQTVGFGNDAALLSAVVTGTINVLSTFVGIFLVDKTGRRF 346
Query: 301 FFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLV 360
L++ M+I +++ I LA + L + + +VI +C++V+ + SWGPLGWL+
Sbjct: 347 LLLQSSVHMLICQLVIGIILAKDLDVTGTLARPQALVVVIFVCVYVMGFAWSWGPLGWLI 406
Query: 361 PSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYF 420
PSE FPLE R+ G ++ V N+ FT +IAQAFL+ LC +K GIF F G +V+M F F
Sbjct: 407 PSETFPLETRTEGFALAVSCNMFFTFVIAQAFLSMLCAMKSGIFFFFSGWIVVMGLFALF 466
Query: 421 FLPETKQVPIEEIY-LLFENHWFWKRIVKEDNGKFVE 456
F+PETK V I+++ +++ HW+WKR + E++ VE
Sbjct: 467 FVPETKGVSIDDMRDSVWKLHWYWKRFMLEEDEHDVE 503
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q41144 | STC_RICCO | No assigned EC number | 0.5472 | 0.9782 | 0.8585 | N/A | no |
| Q8GW61 | STP14_ARATH | No assigned EC number | 0.7639 | 0.9782 | 0.8908 | yes | no |
| C0SPB2 | YWTG_BACSU | No assigned EC number | 0.3333 | 0.8409 | 0.8446 | yes | no |
| Q10710 | STA_RICCO | No assigned EC number | 0.6107 | 0.9694 | 0.8524 | N/A | no |
| Q07423 | HEX6_RICCO | No assigned EC number | 0.5331 | 0.9782 | 0.8803 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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||
 | fgenesh4_pm.C_LG_XVIII000256 | hypothetical protein (508 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | eugene3.00400011 | hypothetical protein (117 aa) | • | 0.475 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 459 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-105 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 1e-90 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 8e-44 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 2e-18 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-13 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 1e-10 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 2e-10 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 3e-10 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-07 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 5e-06 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 8e-06 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 3e-05 | |
| PRK10406 | 432 | PRK10406, PRK10406, alpha-ketoglutarate transporte | 4e-05 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 6e-05 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 2e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-04 | |
| COG2807 | 395 | COG2807, CynX, Cyanate permease [Inorganic ion tra | 0.002 | |
| PRK10473 | 392 | PRK10473, PRK10473, multidrug efflux system protei | 0.002 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 320 bits (823), Expect = e-105
Identities = 155/441 (35%), Positives = 233/441 (52%), Gaps = 20/441 (4%)
Query: 1 MDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR 60
+ F K F C + L S L+ + A + GR
Sbjct: 25 LIKFFKRFGALTS---------IGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGR 75
Query: 61 RASIMVGSVSFFIGAILNACAV--HISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIR 118
+ S+++G+V F IGA+L A ML++GR+ +G+G+G + VP+Y+SE+AP K+R
Sbjct: 76 KKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLR 135
Query: 119 GAVNQLFQLTTCLGILVANLINYGTEKIH-PWGWRLSLGLATVPATLMFVGGLFLPETPN 177
GA+ L+QL GILVA +I G K GWR+ LGL VPA L+ +G LFLPE+P
Sbjct: 136 GALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPR 195
Query: 178 SLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRN-LFKKKNRPQLVI 236
LV +GKL+EAR VL K+RG ++VD E + D+ + + LF+ K Q ++
Sbjct: 196 WLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKASWLELFRGKTVRQRLL 255
Query: 237 GALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKF 296
+ + FQQLTG+N+I +Y+P IF++LG ++I G+ + I++ VD+F
Sbjct: 256 MGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSL--LVTIIVGVVNFVFTFIAIFLVDRF 313
Query: 297 GRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPL 356
GRR L M I +++ + L KG GI ++ I LF+ + WGP+
Sbjct: 314 GRRPLLLLGAAGMAICFLVLGVALLGVAK-----SKGAGIVAIVFILLFIAFFALGWGPV 368
Query: 357 GWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSA 416
W++ SELFPL +R ++ N L LI F + +FLVF GL+V+
Sbjct: 369 PWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYVFLVFAGLLVLFIL 428
Query: 417 FIYFFLPETKQVPIEEIYLLF 437
F++FF+PETK +EEI LF
Sbjct: 429 FVFFFVPETKGRTLEEIDELF 449
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 283 bits (725), Expect = 1e-90
Identities = 147/427 (34%), Positives = 230/427 (53%), Gaps = 18/427 (4%)
Query: 20 LTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA 79
T + Y + + L S G + A +++ GR+ S+++ ++ F IGAIL
Sbjct: 60 FTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMG 119
Query: 80 C---AVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVA 136
A+ + ML++GR+ LG+G+G + VP+YLSE+AP +RGA+ L+QL GILVA
Sbjct: 120 LAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVA 179
Query: 137 NLINYGTEKIHPW--GWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEK 194
G GWR+ LGL +PA L+F+G FLPE+P LV +G+++EARK L +
Sbjct: 180 YGFGSGK-VSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLAR 238
Query: 195 VRGTANVDAEFSDLIDASNAARAIKNPFRNL-------FKKKNRPQLVIGALGIPAFQQL 247
+RGT+ D E D ++ + R+I+ ++ R +L +G + + FQQ
Sbjct: 239 LRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVV-LQWFQQF 297
Query: 248 TGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGT 307
TG+N+I++Y+P IF++ G + A S+I G +++ VD+FGRR L
Sbjct: 298 TGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAA 357
Query: 308 EMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPL 367
M I + ++ I L K G ++ I LF+ + WGP+ W++ SE+FPL
Sbjct: 358 GMAICLFVLGI---LGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPL 414
Query: 368 EMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFG-IFLVFGGLVVIMSAFIYFFLPETK 426
+R G S+ V N L ++ F L + G +F+ FGGL V+ F+YFFLPETK
Sbjct: 415 SLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETK 474
Query: 427 QVPIEEI 433
+EEI
Sbjct: 475 GRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 8e-44
Identities = 111/417 (26%), Positives = 188/417 (45%), Gaps = 51/417 (12%)
Query: 53 YVTRSRGRRASIMVGSVSFFIGAILNAC------------AVHISMLLLGRIFLGMGIGF 100
Y + GRR S+ + +V FFI A+ +A ++ ++ RI G+G+G
Sbjct: 77 YCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGL 136
Query: 101 GNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEK--IHPW----GWRLS 154
+ P+Y++E+APA IRG + Q G LV +NY + W GWR
Sbjct: 137 ASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYM 196
Query: 155 LGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNA 214
+PA L + F+PETP L+ +GK ++A +L K+ G ++ + +
Sbjct: 197 FASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLDH 256
Query: 215 ARAIKNPFRNLFKKKNRPQLVIGALGI------PAFQQLTGMNSILFYAPVIFQSLGFGS 268
R K L+ G I FQQ G+N +L+YAP IF++LG +
Sbjct: 257 GR-----------KTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGAST 305
Query: 269 GAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGK 328
AL ++I G+ ++++ VDKFGR+ + M I M +
Sbjct: 306 DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT------ 359
Query: 329 PLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALI 388
+ GI ++ + +V A+ SWGP+ W++ SE+FP +R ++ V + +
Sbjct: 360 ---QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFV 416
Query: 389 AQAF------LAALCHLKFGIFLVFGGLVVIMSA-FIYFFLPETKQVPIEEIYLLFE 438
+ F + H G G + +++A F++ F+PETK +EE+ L+E
Sbjct: 417 SWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWE 473
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 2e-18
Identities = 101/427 (23%), Positives = 178/427 (41%), Gaps = 54/427 (12%)
Query: 21 TETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC 80
TE D D + L S + L+ +F Y++ GR+ +++ ++ + +L A
Sbjct: 117 TEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF 176
Query: 81 AVHISMLLLGRIFLGMGI-GFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLI 139
+ + ++ L+ R+ +GMGI G QAV L E P K R V L Q+ LG+++ L+
Sbjct: 177 SPNYTVFLVFRLLVGMGIGGIWVQAVVLNT-EFLPKKQRAIVGTLIQVFFSLGLVLLPLV 235
Query: 140 NYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGT- 198
Y WR ++P L F+ F+PE+P L+ QG+++EA K+L+++
Sbjct: 236 AYFIP-----DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKIN 290
Query: 199 -ANVDAEFSDLIDASNAARAIKNPF--RNLFKKKNRPQLVIGALGIPAFQQLTGMNSILF 255
+ AE L + + + K R + + + +
Sbjct: 291 GKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFT-------TAFSY 343
Query: 256 YAPVIFQSLGFGSGAALY-SSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMV 314
Y V+ G+ +Y I+G+ A LI++ +D+ GRR T ++
Sbjct: 344 YGLVLDLGNLGGN---IYLDLFISGLVELPAKLITLLLIDRLGRR------YTMAASLLL 394
Query: 315 IVAITLALEFGEGKPLPKGIGIFLVIVICL--------FVLAYGRSWGPLGWLVPSELFP 366
L L F +P + + L F + Y L +EL+P
Sbjct: 395 AGVALLLLLF-----VPVDLYFLRTALAVLGKFGITSAFQMVY---------LYTAELYP 440
Query: 367 LEMRSAGQSVVVCNNLL-FTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPET 425
+R+ G V VC+ + ++I+ + F ++FGGL ++ FLPET
Sbjct: 441 TVVRNLG--VGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILT-LFLPET 497
Query: 426 KQVPIEE 432
K VP+ E
Sbjct: 498 KGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 2/146 (1%)
Query: 28 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISML 87
L S+ + + A Y++ GRR +++G + F +G++L A A + +L
Sbjct: 31 LSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLL 90
Query: 88 LLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH 147
L+GR LG+G G A ++E P K RG LF LG L+ L+
Sbjct: 91 LVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLL--AE 148
Query: 148 PWGWRLSLGLATVPATLMFVGGLFLP 173
GWR + + L+ + LFL
Sbjct: 149 SLGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 69/347 (19%), Positives = 124/347 (35%), Gaps = 46/347 (13%)
Query: 32 VLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGR 91
+ L ++ ++ A ++ GRR +++G + F +G +L A + +LL+ R
Sbjct: 33 EIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLR 92
Query: 92 IFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGW 151
+ G+G G A +++ P + RG L LG + L+ G +GW
Sbjct: 93 VLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLL--GGLLASLFGW 150
Query: 152 RLSLGLATVPATLMFV-GGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLID 210
R + + + A L V L LP P +EA L
Sbjct: 151 RAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLV----------------- 193
Query: 211 ASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGA 270
P L + L++ L ++L Y P+ + LG +
Sbjct: 194 ----------PAWKLLLRDPVLWLLLALLLFGF-----AFFALLTYLPLYQEVLGLSALL 238
Query: 271 ALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPL 330
A + G+ I L+ D+ GRR L A +I+ + +A+ E
Sbjct: 239 AGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTE------- 291
Query: 331 PKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVV 377
++L++ + L G + L + S+L P E R +
Sbjct: 292 ---SSLWLLVALLLLGFGAGLVFPAL-NALVSDLAPKEERGTASGLY 334
|
Length = 346 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-10
Identities = 81/362 (22%), Positives = 130/362 (35%), Gaps = 80/362 (22%)
Query: 47 STFGASYVTR------------SRGRRASIMV-----GSVSFFIGAILNACAVHIS---M 86
+TF A ++ R GR+ ++++ G + IG + + + I +
Sbjct: 39 ATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPIL 98
Query: 87 LLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINY----- 141
LLL R+ G +G LYL+E AP RG Q+ +G+L+A L
Sbjct: 99 LLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYL 158
Query: 142 -GTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTAN 200
G + + WGWR+ ++ V + L ETP Q K + R
Sbjct: 159 LGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRG---------- 208
Query: 201 VDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVI 260
P K +P L+ L I + FY
Sbjct: 209 --------------------PIAETLTKHRKPFLLGLGLVI--------ATTTTFYLITT 240
Query: 261 F------QSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMV 314
+ Q+LG + +AL +++ I I +S A D+ GRR + + V
Sbjct: 241 YLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAV 300
Query: 315 IVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQ 374
+ + L L G ++ L G GP+G +P ELFP E+R G
Sbjct: 301 PLLMAL---------LDSGSFTLFFFLVLGMALIGGMYTGPMGSFLP-ELFPTEVRYTGA 350
Query: 375 SV 376
S+
Sbjct: 351 SL 352
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 63/327 (19%), Positives = 114/327 (34%), Gaps = 33/327 (10%)
Query: 59 GRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIR 118
GRR ++ + F + +L A A +++ LL+ R G+G+G + +SE AP + R
Sbjct: 80 GRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFR 139
Query: 119 GAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATV-PATLMFVGGLFLPETPN 177
G L +G V + I +GWR + + P L+ + FLPE+ +
Sbjct: 140 GTAVGLMFCGYPIGAAVGGFL--AGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESID 197
Query: 178 SLVEQGKLDEARKVLE-KVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVI 236
LV + R V + A + + R+ F+ LF+ K
Sbjct: 198 FLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRS---VFKALFQGKT------ 248
Query: 237 GALGIPAFQQLTGMNSILFYA-----PVIFQSLGFGSGAALYSSVITGIALCIAALISMA 291
A L M + Y P + LGF A + I ++I
Sbjct: 249 -ARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGW 307
Query: 292 FVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGR 351
D+ G R ++ ++ + + P L+++ +
Sbjct: 308 LADRLGPRVT-------ALLLLLGAVFAVLVGSTLFSP------TLLLLLGAIAGFFVNG 354
Query: 352 SWGPLGWLVPSELFPLEMRSAGQSVVV 378
L L+ +P +R+ G +
Sbjct: 355 GQSGLYALMA-LFYPTAIRATGVGWAI 380
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 6e-07
Identities = 37/187 (19%), Positives = 62/187 (33%), Gaps = 14/187 (7%)
Query: 238 ALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKF 296
L + F G +L Y P+ Q LG + A + G+ + AL+ D+
Sbjct: 179 LLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL 238
Query: 297 GRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPL 356
GRR L G + +++ L++ + L G P
Sbjct: 239 GRRRLLLLIGLLLAALGLLLLALAPSL------------ALLLVALLLLGFGLG-FAFPA 285
Query: 357 GWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSA 416
+ SEL P E R + L AL L +G + + +++A
Sbjct: 286 LLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAA 345
Query: 417 FIYFFLP 423
+ LP
Sbjct: 346 LLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 5e-06
Identities = 86/393 (21%), Positives = 144/393 (36%), Gaps = 65/393 (16%)
Query: 91 RIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLI----------- 139
R +LG+GIG + SE A K RGA+ GIL ++
Sbjct: 122 RFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHS 181
Query: 140 -NYGTEKIHPWG---------WRLSLGLATVPATLMFVGGLFLPETP--NSLVEQGKLDE 187
++ G WR+ +G VPA L L +PETP + V + +++
Sbjct: 182 LEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAK-DVEQ 240
Query: 188 ARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKK--KNRPQLVIGALGIPAFQ 245
A + V ++AE ++ AS A K + + F K R + F
Sbjct: 241 AASDMSAV-LQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFL 299
Query: 246 QLTGMNSILFYAPVIFQSLGFGSGAA-------LYSSVI--TGIALCIAA---LISMAFV 293
+ VI ++G+ AA LY + + IAL +++ V
Sbjct: 300 LDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLV 359
Query: 294 DKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSW 353
D GR+ L + + ++ L G + V+ F +G +
Sbjct: 360 DIIGRKPIQLMGFFILTVLFFVLGFAY-------NHLSTH-GFLAIYVLAQFFANFGPN- 410
Query: 354 GPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQ-AFLAALCH------LKFGIFLV 406
++VP E+FP RS + + A+I Q FL H GI++
Sbjct: 411 -ATTFIVPGEVFPTRYRSTAHGISAASGKA-GAIIGQFGFLYLAQHGDPTKGYPTGIWM- 467
Query: 407 FGGLVVIMSAFIY------FFLPETKQVPIEEI 433
G ++ I + F++ +PETK +EE+
Sbjct: 468 -GHVLEIFALFMFLGILFTLLIPETKGKSLEEL 499
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 8e-06
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Query: 59 GRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIR 118
GR+ ++VG F + + A + +I++L++ R G G F A ++++ P + R
Sbjct: 26 GRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEER 85
Query: 119 GAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF-LPET 175
G L LG L+ + G GWR + A F+ F LPET
Sbjct: 86 GVALGLMSAGIALGPLLGPPL--GGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 3e-05
Identities = 44/191 (23%), Positives = 72/191 (37%), Gaps = 18/191 (9%)
Query: 22 ETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVG-SVSFFIGAILNAC 80
E D C D+ + +Y +V F + GR+ +++ SV+ F A ++
Sbjct: 194 EKDLCIPDSGK-GMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFF-AFFSSF 251
Query: 81 AVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLIN 140
L R+ G GIG V Y +E + RG + +G + A +
Sbjct: 252 VQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMA 311
Query: 141 YGTEKIHPWGWRLSLGLA-------------TVPATLMFVGGLFLPETPNSLVEQGKLDE 187
+ I +GW +G A P F+PE+P +E GK DE
Sbjct: 312 WAI--IPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDE 369
Query: 188 ARKVLEKVRGT 198
A +L+ + T
Sbjct: 370 AWMILKLIHDT 380
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 4e-05
Identities = 79/355 (22%), Positives = 143/355 (40%), Gaps = 80/355 (22%)
Query: 53 YVTRSRGRRASIMVGSVSFFIGAILNACAVHIS--------MLLLGRIFLGMGIG--FGN 102
+ GR+ S+++ G+++ AC +LLL R+F G+ +G +G
Sbjct: 85 RIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGT 144
Query: 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLG-----ILVANLINY--GTEKIHPWGWRLSL 155
A Y+SE+A +G FQ T +G +LV ++ ++ WGWR+
Sbjct: 145 SAT--YMSEVAVEGRKGFYAS-FQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPF 201
Query: 156 GLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAA 215
L V A V L+L + +LDE E L +A +
Sbjct: 202 ALGAVLA----VVALWL---------RRQLDETS------------QQETRALKEAGS-- 234
Query: 216 RAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSS 275
+ L++ + +V+G T S+ FY + + A ++++
Sbjct: 235 ------LKGLWRNRRAFIMVLG---------FTAAGSLCFYTFTTYMQKYLVNTAGMHAN 279
Query: 276 VITGI---ALCIAALISM---AFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKP 329
V +GI AL + LI A DK GRR L G+ ++ V + L +
Sbjct: 280 VASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSAL-------QN 332
Query: 330 LPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRS--AGQSVVVCNNL 382
+ F +++ L ++++ S + ++ +E+FP ++R+ G S V N L
Sbjct: 333 VSSPYAAFGLVMCALLIVSFYTS---ISGILKAEMFPAQVRALGVGLSYAVANAL 384
|
Length = 432 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 6e-05
Identities = 68/346 (19%), Positives = 111/346 (32%), Gaps = 42/346 (12%)
Query: 59 GRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIR 118
GRR ++ V F G + A + + R+ +G+G+G + Y+ E P +R
Sbjct: 75 GRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLR 134
Query: 119 GAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNS 178
+ L +G +VA + + GWR ++ +P +PE
Sbjct: 135 NKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEA--- 191
Query: 179 LVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGA 238
E K A K L + + + I N L +
Sbjct: 192 --EDWKEKHAGKALVR-----------TMVDILYGGEHRIANIVMTLAAAMVQSAGKRWP 238
Query: 239 LGIPAFQQLTGMN-----SILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFV 293
+ + N + LG V + I + +
Sbjct: 239 TFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLG 298
Query: 294 DKFGRR---AFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYG 350
D GRR L AG +II + + +A+ G+G+F +L G
Sbjct: 299 DWLGRRKAYVCSLLAGQLLIIPVFAIGANVAV---------LGLGLFF-----QQMLVQG 344
Query: 351 RSWGPLGWLVPSELFPLEMRSAGQSVV--VCNNLLFTALIAQAFLA 394
WG L + E FP + R+AG + N A I A LA
Sbjct: 345 -IWGILPKHL-GEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLA 388
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 70/404 (17%), Positives = 129/404 (31%), Gaps = 38/404 (9%)
Query: 27 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISM 86
S+ + +V F ++ G R ++ V V + + L A A
Sbjct: 25 GLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVS 84
Query: 87 LLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKI 146
L + R+ LG + L ++ PA R +F LG ++ + +
Sbjct: 85 LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWI--L 142
Query: 147 HPWGWRLSLGLATVPATLM-FVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEF 205
+ W+ + + V + + F+P+ P + L E K + AE
Sbjct: 143 IHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ---KAKWLTEEEKYIVVGGL----LAEQ 195
Query: 206 SDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPV-IFQSL 264
++ IK ++ ++ ALG G L + P + Q
Sbjct: 196 QGKGPSTPKKYQIKELLKD-------RRVWGLALGQFLVNIGLGF--FLTWFPTYLVQER 246
Query: 265 GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEF 324
G A + + + GI I ++ D RR L + I +V L
Sbjct: 247 GLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFAT 306
Query: 325 GEGKPLPKGIGIFLVIVICLFVLAY-GRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNL- 382
+ L L + G G +GW + S+ P AG + + N+L
Sbjct: 307 NYVNI--------PYAALALVALGFFGLGAGAIGWALISDNAP--GNIAGLTGGLINSLG 356
Query: 383 ----LFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFL 422
+ ++ A A L+ + ++ A Y L
Sbjct: 357 NLGGIVGPIVIGAIAATTGSFAGA--LMVVAALALIGALSYLLL 398
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 3/147 (2%)
Query: 28 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMV-GSVSFFIGAILNACAVHISM 86
L S G++ ++ GRR +++ G + +G +L A A +++
Sbjct: 208 LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL 267
Query: 87 LLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKI 146
LL+ + LG G+GF A+ SE+AP + RG + LF LG + L+ +
Sbjct: 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLL--AGLLL 325
Query: 147 HPWGWRLSLGLATVPATLMFVGGLFLP 173
G+ + A L + L LP
Sbjct: 326 DTGGYGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 4/148 (2%)
Query: 44 GLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQ 103
GL + + R G S+ + + G ++ + + +L LG + G GI N
Sbjct: 61 GLFAPAAPR-LARRFGEERSLFLALLLIAAGILIRS-LGGLPLLFLGTLLAGAGIAVINV 118
Query: 104 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPAT 163
+P + P ++ G + L+ + G +A + + H GWR +LG + A
Sbjct: 119 LLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQ-HSGGWRGALGFWALLAL 176
Query: 164 LMFVGGLFLPETPNSLVEQGKLDEARKV 191
L + L + KL RKV
Sbjct: 177 LALLIWLPQALREQAASIATKLVSVRKV 204
|
Length = 395 |
| >gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 39 SLYFAGLVST--FGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGM 96
S+Y AG+ + F RS GR+ + G+ F I ++L + A S+ L GR G+
Sbjct: 45 SVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGI 103
Query: 97 GIGF 100
G G
Sbjct: 104 GAGC 107
|
Length = 392 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 459 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.98 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.98 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.98 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.98 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.98 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.98 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.98 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.97 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.97 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.97 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.97 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.97 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.97 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.97 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.97 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.97 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.97 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.96 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.96 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.96 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.96 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.96 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.96 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.95 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.95 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.95 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.95 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.95 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.94 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.94 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.94 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.94 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.93 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.93 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.93 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.93 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.93 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.92 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.92 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.91 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.9 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.89 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.88 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.88 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.88 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.86 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.86 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.85 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.85 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.85 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.84 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.84 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.82 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.82 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.81 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.81 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.8 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.72 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.69 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.68 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.68 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.68 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.64 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.64 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.59 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.54 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.51 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.49 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.46 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.46 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.46 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.45 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.45 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.44 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.42 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.42 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.41 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.4 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.38 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.38 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.38 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.38 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.37 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.37 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.35 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.34 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.33 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.32 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.32 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.31 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.31 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.29 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.29 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.29 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.29 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.28 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.28 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.27 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.27 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.26 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.26 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.24 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.24 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.24 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.24 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.23 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.23 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.23 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.22 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.22 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.22 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.22 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.22 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.21 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.2 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.2 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.19 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.18 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.18 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.17 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.17 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.17 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.17 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.16 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.16 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.14 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.14 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.14 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.14 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.12 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.11 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.09 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.09 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.08 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.08 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.08 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.08 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.08 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.08 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.07 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.06 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.05 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.05 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.04 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.02 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.01 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.01 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.99 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.98 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.98 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.96 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.96 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.95 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.94 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.93 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.92 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.9 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.9 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.9 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.89 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.88 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.85 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.85 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.84 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.83 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.8 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.79 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.79 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.78 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.77 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.75 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.73 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.72 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.72 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.7 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.67 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.67 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.65 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.64 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.62 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.62 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.58 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.58 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.56 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.51 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.51 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.5 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.43 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.42 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.42 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.36 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.33 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.28 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.28 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.28 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.2 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.18 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.17 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.14 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.13 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.11 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.03 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.02 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.95 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.92 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.79 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.73 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.7 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.66 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.6 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.55 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.43 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.24 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.08 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 96.98 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.77 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.76 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.7 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.69 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.55 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.48 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.46 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.42 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.15 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 96.03 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 95.52 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 94.31 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 94.21 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 94.04 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 93.79 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 93.22 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 92.95 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 91.99 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 91.67 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 91.42 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 91.14 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 91.13 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 91.04 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 91.03 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 89.38 | |
| PF03547 | 385 | Mem_trans: Membrane transport protein; InterPro: I | 87.64 | |
| KOG2881 | 294 | consensus Predicted membrane protein [Function unk | 83.25 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-46 Score=342.42 Aligned_cols=429 Identities=27% Similarity=0.498 Sum_probs=365.8
Q ss_pred HHHHHhHHHHhhhhc-cCccccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhh-
Q 012627 4 FLKEFFPKVYRRKQA-HLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA- 81 (459)
Q Consensus 4 f~~~f~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~- 81 (459)
.+++|+++.+....- .+++++. ....+.+++++.+|.++|++..|.++||+|||..+..+.++..++.+++.++
T Consensus 36 ~i~~f~n~t~~~r~g~~~s~~~~----~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~ 111 (485)
T KOG0569|consen 36 LIKSFINETLIERYGLPLSDSTL----DLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSK 111 (485)
T ss_pred HHHHHHHHHHHHhcCCCCChHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 455665544433322 3444433 4456899999999999999999999999999999999998888888777664
Q ss_pred --hhHHHHHHHHHHhhhhhhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhH
Q 012627 82 --VHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLAT 159 (459)
Q Consensus 82 --~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~ 159 (459)
++++.++++|++.|+..|........++.|..|++.||....+.+.+..+|.+++..++.-...-+...|++.+.+..
T Consensus 112 ~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~ 191 (485)
T KOG0569|consen 112 SAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPL 191 (485)
T ss_pred HhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999988854444445567999999999
Q ss_pred HHHHHHHHHhcccCCChhhHHh-cCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHH---hhhcCchhHHhhhcCCCchH
Q 012627 160 VPATLMFVGGLFLPETPNSLVE-QGKLDEARKVLEKVRGTANVDAEFSDLIDASNAA---RAIKNPFRNLFKKKNRPQLV 235 (459)
Q Consensus 160 ~~~~~~~~~~~~l~e~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 235 (459)
+++++..+...++||||+|+.. +++.++|++.+++.++.++.+.+.++..++.+++ ++.+.+++++++++..|+-.
T Consensus 192 i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~ 271 (485)
T KOG0569|consen 192 IPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPL 271 (485)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHH
Confidence 9999999999999999999988 8999999999999999987666655543333322 22566789999998877766
Q ss_pred HHHHHHhHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHH
Q 012627 236 IGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVI 315 (459)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 315 (459)
...+.+....++.+.+...+|...++++.|++..++.+.....+....+.++++.++.||.|||++++.+..++.+..++
T Consensus 272 ~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~ 351 (485)
T KOG0569|consen 272 LIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLL 351 (485)
T ss_pred HHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 66666888899999999999999999999999999999999999999999999999999999999999999888888777
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHH
Q 012627 316 VAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAA 395 (459)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (459)
+........... ....+..+...+.+...++.+.+|+.+.+.+|++|++.|..+.++....+++..++....+..+
T Consensus 352 ~~~~~~l~~~~~----~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l 427 (485)
T KOG0569|consen 352 MSIALFLSNSFG----SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPL 427 (485)
T ss_pred HHHHHHHHHHhh----hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776654432211 2334556788888999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhccc
Q 012627 396 LCHLKFGIFLVFGGLVVIMSAFIYFFLPETKQVPIEEIYLLFENH 440 (459)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (459)
.+..|...++.+.+.+.+..+.++..+||||+|+..|+.++.+++
T Consensus 428 ~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 428 QNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 999988888899999999999999999999999999988887766
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=321.05 Aligned_cols=407 Identities=27% Similarity=0.498 Sum_probs=295.1
Q ss_pred ccccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhh------------hhHHHHH
Q 012627 21 TETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA------------VHISMLL 88 (459)
Q Consensus 21 ~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~------------~~~~~l~ 88 (459)
...++++.++.+.+++.+.+.++..++++++|+++||+|||+++.++.++++++.+.++++ ++++.++
T Consensus 45 ~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (479)
T PRK10077 45 PQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFV 124 (479)
T ss_pred cccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHH
Confidence 3355568899999999999999999999999999999999999999999999998888763 3357789
Q ss_pred HHHHHhhhhhhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccc------cccCchhhHHHHhhHHHH
Q 012627 89 LGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTE------KIHPWGWRLSLGLATVPA 162 (459)
Q Consensus 89 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~------~~~~~gwr~~f~~~~~~~ 162 (459)
++|+++|++.|...+...++++|++|+++|++++++.+.+..+|.++++.++.... .....|||+.|++.+++.
T Consensus 125 ~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~ 204 (479)
T PRK10077 125 IYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPA 204 (479)
T ss_pred HHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987754332 123468999999988888
Q ss_pred HHHHHHhcccCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHh
Q 012627 163 TLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIP 242 (459)
Q Consensus 163 ~~~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (459)
++..+..+++||+|+++..+++.+++++..++..+.++.....++..+...++ +...+..+. .........+...
T Consensus 205 ~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~ 279 (479)
T PRK10077 205 LLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLDHG---RKTGGKLLM--FGVGVIVIGVMLS 279 (479)
T ss_pred HHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHHHHHHHh---hhhhhhhcc--hhHHHHHHHHHHH
Confidence 77766677799999998888888887777666654433222222211111000 000011111 0001111111123
Q ss_pred HHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHH
Q 012627 243 AFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLAL 322 (459)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (459)
.+.+..+.+...++.|.+.++.|++...........++..+++.+++++++||+|||+.+..+..+..++.+++......
T Consensus 280 ~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~ 359 (479)
T PRK10077 280 VFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT 359 (479)
T ss_pred HHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc
Confidence 34445555667778899888899988777777788888999999999999999999999888887777776665543210
Q ss_pred HhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHH------
Q 012627 323 EFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAAL------ 396 (459)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------ 396 (459)
............++..++...+.+..+.+++|.+|++.|+++.|+.+..++++..+++.+++.+.
T Consensus 360 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~ 430 (479)
T PRK10077 360 ---------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLV 430 (479)
T ss_pred ---------CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchh
Confidence 01112223334444555555556676788899999999999999999999999999988776554
Q ss_pred hhhhHH-HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcccc
Q 012627 397 CHLKFG-IFLVFGGLVVIMSAFIYFFLPETKQVPIEEIYLLFENHW 441 (459)
Q Consensus 397 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (459)
++.++. .+.+++..+.+..++.+++.||+|+++.+|.++..+++.
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 476 (479)
T PRK10077 431 AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPET 476 (479)
T ss_pred hhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhcc
Confidence 333333 344445555555566666788999988888777665543
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=326.54 Aligned_cols=395 Identities=19% Similarity=0.256 Sum_probs=278.5
Q ss_pred ccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhh------HHHHHHHHHHhhhhhhh
Q 012627 27 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVH------ISMLLLGRIFLGMGIGF 100 (459)
Q Consensus 27 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~ 100 (459)
+.+..+.+++.+.+.+++.++++++|+++||+|||+++.++.+++.++.++++++++ ++.++++|+++|++.|.
T Consensus 52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 131 (502)
T TIGR00887 52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGG 131 (502)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhh
Confidence 456677899999999999999999999999999999999999999999999988865 78999999999999999
Q ss_pred hcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhcccc---------------------ccCchhhHHHHhhH
Q 012627 101 GNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEK---------------------IHPWGWRLSLGLAT 159 (459)
Q Consensus 101 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~---------------------~~~~gwr~~f~~~~ 159 (459)
..+....++.|++|+++|++++++......+|.++++.++..... ...++||++|.+.+
T Consensus 132 ~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ 211 (502)
T TIGR00887 132 DYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGA 211 (502)
T ss_pred hhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHH
Confidence 999999999999999999999999999999999999887543211 11247999999999
Q ss_pred HHHHHHHHHhcccCCChhhHHhcCCHH-HHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCc---hH
Q 012627 160 VPATLMFVGGLFLPETPNSLVEQGKLD-EARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQ---LV 235 (459)
Q Consensus 160 ~~~~~~~~~~~~l~e~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 235 (459)
+++++.++..+++||||+|+..+++.+ ++++.+++....+..++. ++..+.+++++..+.+++++++++..++ ..
T Consensus 212 ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 290 (502)
T TIGR00887 212 VPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEP-DEVEKASTAVEVPKASWSDFFTHFFKWRHGKHL 290 (502)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCc-ccccchhccccchhhhHHHHHHHHhhhHHHHHH
Confidence 888887777888999999998877764 466666655433211111 1100000011111235777776432222 22
Q ss_pred HHHHHHhHHHhhcchhHHHHhHHHHHHHcCCCCCchhH------------HHHHHHHHHHHHHHHHHHHHHHhCCcceee
Q 012627 236 IGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALY------------SSVITGIALCIAALISMAFVDKFGRRAFFL 303 (459)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 303 (459)
+... ...+.....++....+.|.++++.|++....+. ......++.+++.+++++++||+|||+.+.
T Consensus 291 ~~~~-~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~ 369 (502)
T TIGR00887 291 LGTA-GSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQL 369 (502)
T ss_pred HHHH-HHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHH
Confidence 2111 223333344556677789999888887653221 233344566778899999999999999887
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHH
Q 012627 304 EAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLL 383 (459)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 383 (459)
.+..+..++..++...... .+ .... ..........++.+..++.+.+..|.+|++.|+++.|+.+..+++
T Consensus 370 ~~~~~~~~~~~~l~~~~~~-------~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~ 439 (502)
T TIGR00887 370 MGFFILTVLFFVLGFAYNH-------LS-THGF--LAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKA 439 (502)
T ss_pred HHHHHHHHHHHHHHHHHHh-------cc-hhHH--HHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhh
Confidence 7766666555544433210 00 0111 112222222334455566677788999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh----------hH-HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH
Q 012627 384 FTALIAQAFLAALCHL----------KF-GIFLVFGGLVVIMSAFIYFFLPETKQVPIEEIY 434 (459)
Q Consensus 384 ~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (459)
++++++.+.+.+.+.. +. ..++++++++++. .+..+++||+++++.+|++
T Consensus 440 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~i~~~~lpEt~~~~leei~ 500 (502)
T TIGR00887 440 GAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLG-ILFTLLIPETKGKSLEELS 500 (502)
T ss_pred HHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHH-HHHheEeccCCCCCHHhhh
Confidence 9999999999988742 22 3445555554444 4445677999998877654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=325.27 Aligned_cols=390 Identities=16% Similarity=0.209 Sum_probs=289.8
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+++|++..+.+++.++++++.+++++++|+++||+|||++++++++++++++++++++++++.++++|++.|++.|+..
T Consensus 194 ~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~ 273 (742)
T TIGR01299 194 EKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAI 273 (742)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhcccc-----------ccCchhhHHHHhhHHHHHHHHHHhcc
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEK-----------IHPWGWRLSLGLATVPATLMFVGGLF 171 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~-----------~~~~gwr~~f~~~~~~~~~~~~~~~~ 171 (459)
+...+++.|++|+++|++.++++.+++.+|.++++.+++.... ....+||+.+++.++++++.+++.++
T Consensus 274 p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 274 PIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF 353 (742)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987544321 12247999999999988887777888
Q ss_pred cCCChhhHHhcCCHHHHHHHHHHHcCCCcch----HHH---HHHHHHHHHH------hhh------------------cC
Q 012627 172 LPETPNSLVEQGKLDEARKVLEKVRGTANVD----AEF---SDLIDASNAA------RAI------------------KN 220 (459)
Q Consensus 172 l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~------~~~------------------~~ 220 (459)
+||||+|+..+++.+++.+.++++...+... ... +......... ++. ..
T Consensus 354 lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (742)
T TIGR01299 354 MPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWG 433 (742)
T ss_pred cCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHH
Confidence 9999999999999999999999987765321 100 0000000000 000 01
Q ss_pred chhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHHHHc------------------------------------
Q 012627 221 PFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSL------------------------------------ 264 (459)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 264 (459)
+++++++.+.+++.++. . +.++....+++.+..|+|.++++.
T Consensus 434 ~~~~lf~~~~~~~tl~l-~-~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (742)
T TIGR01299 434 NFLRCFNPEVREITIKL-M-GVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEY 511 (742)
T ss_pred HHHHHcCccHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhcccccc
Confidence 24455555444443333 3 456777778999999999876431
Q ss_pred ------CC-----C----------------C-------------------------------------------------
Q 012627 265 ------GF-----G----------------S------------------------------------------------- 268 (459)
Q Consensus 265 ------g~-----~----------------~------------------------------------------------- 268 (459)
|+ + .
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 591 (742)
T TIGR01299 512 DNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDD 591 (742)
T ss_pred ccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccc
Confidence 00 0 0
Q ss_pred ---CchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH
Q 012627 269 ---GAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLF 345 (459)
Q Consensus 269 ---~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (459)
........+..++.+++.+++++++||+|||+++..+.++.+++.+++.+.. . ....+++.++.
T Consensus 592 ~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~------------s-~~~ll~~~~l~ 658 (742)
T TIGR01299 592 EGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGN------------S-ESAMIALLCLF 658 (742)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc------------c-HHHHHHHHHHH
Confidence 0013345566788999999999999999999998877777666665554331 1 12222333333
Q ss_pred HHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 012627 346 VLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPET 425 (459)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (459)
+++.+..+ +....+++|++|++.|++++|+.+..+.+|.+++|.+.+.+.+.. ....+++.+++.+++.++..++||+
T Consensus 659 g~~~~~~~-~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~-~~~pf~i~a~~lll~~ll~~~LPET 736 (742)
T TIGR01299 659 GGLSIAAW-NALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT-KAAPILFASAALACGGLLALKLPDT 736 (742)
T ss_pred HHHHHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44333333 344677789999999999999999999999999999999887654 3344444444555555566677988
Q ss_pred CCCC
Q 012627 426 KQVP 429 (459)
Q Consensus 426 ~~~~ 429 (459)
+++.
T Consensus 737 ~~~~ 740 (742)
T TIGR01299 737 RGQV 740 (742)
T ss_pred cccc
Confidence 8764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=312.61 Aligned_cols=408 Identities=38% Similarity=0.675 Sum_probs=337.9
Q ss_pred hhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcchhhHHHH
Q 012627 31 QVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLS 110 (459)
Q Consensus 31 ~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 110 (459)
.+.+|+.+...++..++++++|+++|++|||+.++++.+++.++.+++++++|+++++++|++.|+|.|......+.+++
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s 168 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS 168 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence 56699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCChhhHHhcCCHHHHHH
Q 012627 111 EMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARK 190 (459)
Q Consensus 111 ~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~~~~~~~~~~~~ 190 (459)
|..|++.||...+..+....+|..++..+++...... ++||..+.+..+++++..+..+++||+|+|+..+++.+++++
T Consensus 169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~-~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~ 247 (513)
T KOG0254|consen 169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVY-AGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKR 247 (513)
T ss_pred hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCC-ccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHH
Confidence 9999999999999999999999999987766555432 589999999999999988778889999999999999999999
Q ss_pred HHHHHcCC--CcchHHHHHHHHHHHHHh---hhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHHHHcC
Q 012627 191 VLEKVRGT--ANVDAEFSDLIDASNAAR---AIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLG 265 (459)
Q Consensus 191 ~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 265 (459)
.+++.++. .+.+.+.++.......+. +.+..+.+++++...++..+... +..+.++.+.+...+|.+.+++..|
T Consensus 248 ~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~-l~~fqq~tG~~~~~~Y~~~if~~~g 326 (513)
T KOG0254|consen 248 SLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLL-LQLFQQLTGINYVFYYSTTIFKSAG 326 (513)
T ss_pred HHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHH-HHHHHHHhCCceEEeehHHHHHhcC
Confidence 99999983 333444433331111111 11223566666444444444444 8889999999999999999999888
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH
Q 012627 266 FGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLF 345 (459)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (459)
.+... .......++...++..++..+.||+|||+.++.+...+.++.++++........... ......+..+...+++
T Consensus 327 ~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 404 (513)
T KOG0254|consen 327 LKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPN-SSKGAGWLAIVFLCLF 404 (513)
T ss_pred CCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCC-cccchhHHHHHHHHHH
Confidence 77554 566677788888899999999999999999999999999998888776544322110 1234567788888889
Q ss_pred HHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHH-HHHHhcC
Q 012627 346 VLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK-FGIFLVFGGLVVIMSA-FIYFFLP 423 (459)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~ 423 (459)
...+..+++++.+.+.+|.+|.+.|+++.++....++....+....+....+..+ ...+..+.+++.+... ..++++|
T Consensus 405 v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~p 484 (513)
T KOG0254|consen 405 IFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVP 484 (513)
T ss_pred HHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcc
Confidence 9999999999999999999999999999999999999999998888877777665 5667777777777777 7888999
Q ss_pred CCCCCCHHHHHHHhccccc
Q 012627 424 ETKQVPIEEIYLLFENHWF 442 (459)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~ 442 (459)
|+++++.+|+++..+++..
T Consensus 485 ETkg~sleei~~~~~~~~~ 503 (513)
T KOG0254|consen 485 ETKGLTLEEINELFEEGIK 503 (513)
T ss_pred cCCCCcHHHHHHHHHcCCc
Confidence 9999999999887766543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=306.02 Aligned_cols=384 Identities=21% Similarity=0.327 Sum_probs=276.7
Q ss_pred ccccccccC---chhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 012627 21 TETDYCKYD---NQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMG 97 (459)
Q Consensus 21 ~~~~~~~~s---~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 97 (459)
+..++++++ +.+.+++.+++.++..++++++|+++||+|||+++.++.++.+++.+++++++|++.+++.|++.|++
T Consensus 114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~ 193 (505)
T TIGR00898 114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMG 193 (505)
T ss_pred cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 446678888 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCChh
Q 012627 98 IGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPN 177 (459)
Q Consensus 98 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~ 177 (459)
.+...+...+++.|++|+++|+++.++...+..+|.++++.+++... +||+.|++.+++.++..+..+++||+|+
T Consensus 194 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-----~wr~~~~~~~i~~~~~~~~~~~~~esp~ 268 (505)
T TIGR00898 194 IGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP-----DWRWLQLAVSLPTFLFFLLSWFVPESPR 268 (505)
T ss_pred ccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 99999999999999999999999999999999999999999865443 3999999999988887777778999999
Q ss_pred hHHhcCCHHHHHHHHHHHcCCCcchHHHH--HHH-HHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHH
Q 012627 178 SLVEQGKLDEARKVLEKVRGTANVDAEFS--DLI-DASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSIL 254 (459)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (459)
|+..+++.+++.+.+++..+.+......+ +.. ++...++..+.+++++++++..+...+... ...+..... .
T Consensus 269 ~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~----~ 343 (505)
T TIGR00898 269 WLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLM-MLWFTTAFS----Y 343 (505)
T ss_pred HHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHH-HHHHHHHHH----H
Confidence 99999999998888777654432221111 111 111111112346777777766555444333 222221111 1
Q ss_pred HhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchh
Q 012627 255 FYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGI 334 (459)
Q Consensus 255 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (459)
+..+.+....+.+ ........++..+++.++.+++.||+|||+.+..+..+.+++.+++.... ...
T Consensus 344 ~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~-----------~~~ 409 (505)
T TIGR00898 344 YGLVLDLGNLGGN---IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP-----------VDL 409 (505)
T ss_pred HHHhccccccCCC---hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC-----------CCc
Confidence 2222233334433 34445566788889999999999999999988777666666555443321 111
Q ss_pred HHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 012627 335 GIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIM 414 (459)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (459)
.+.......+..++....+ +..+.+..|.+|++.|+++.|+.+..+.+++.++|.+.+ +.+......++++ +++.++
T Consensus 410 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~-~~~~~~ 486 (505)
T TIGR00898 410 YFLRTALAVLGKFGITSAF-QMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLF-GGLALL 486 (505)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHH-HHHHHH
Confidence 1222233333333333333 334567789999999999999999999999999999988 4433333334444 444444
Q ss_pred HHHHHHhcCCCCCCCHH
Q 012627 415 SAFIYFFLPETKQVPIE 431 (459)
Q Consensus 415 ~~~~~~~~~~~~~~~~~ 431 (459)
+.+..+++||+++++.+
T Consensus 487 ~~~~~~~lpet~~~~l~ 503 (505)
T TIGR00898 487 AGILTLFLPETKGVPLP 503 (505)
T ss_pred HHHHHHcCcCCCCCCCC
Confidence 45556678888877654
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=297.32 Aligned_cols=409 Identities=35% Similarity=0.660 Sum_probs=291.2
Q ss_pred ccCccccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhh---hhHHHHHHHHHHh
Q 012627 18 AHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA---VHISMLLLGRIFL 94 (459)
Q Consensus 18 ~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~ 94 (459)
.+.+.++.-+.+..+.+++.+++.++..++++++|+++||+|||+++..+.+++.++.+++.+. .+++.+++.|+++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 137 (481)
T TIGR00879 58 FKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLL 137 (481)
T ss_pred HhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 3333334445678999999999999999999999999999999999999999999999998654 4556899999999
Q ss_pred hhhhhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHH-hccccccCchhhHHHHhhHHHHHHHHHHhcccC
Q 012627 95 GMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLIN-YGTEKIHPWGWRLSLGLATVPATLMFVGGLFLP 173 (459)
Q Consensus 95 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~-~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~ 173 (459)
|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.++ .........+||+.|++.++..++..+..+++|
T Consensus 138 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~ 217 (481)
T TIGR00879 138 GIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLP 217 (481)
T ss_pred HhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999996 113333456899999997777776666677799
Q ss_pred CChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHH-----HHHHhhhcCchhHHhhhcC--CCchHHHHHHHhHHHh
Q 012627 174 ETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDA-----SNAARAIKNPFRNLFKKKN--RPQLVIGALGIPAFQQ 246 (459)
Q Consensus 174 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 246 (459)
|+|++...+++.+++++..++....++.+.+..+..+. ..+.+..+..+++.++... .++...... +..+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 296 (481)
T TIGR00879 218 ESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVV-LQWFQQ 296 (481)
T ss_pred CChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHH-HHHHHH
Confidence 99988877777766666555544433222221111000 0011111222334433221 122222222 444445
Q ss_pred hcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcC
Q 012627 247 LTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGE 326 (459)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (459)
........++.|.+.++.|++..+.+.......++.+++.++.+++.||++||+.+..+..+..++.+.+.........
T Consensus 297 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 375 (481)
T TIGR00879 297 FTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVT- 375 (481)
T ss_pred HhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccC-
Confidence 5555667788899888899998888888889999999999999999999999998877766655555554432211100
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-
Q 012627 327 GKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFL- 405 (459)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 405 (459)
.......+..+....++..+++....+....+..|.+|++.|+++.++.+...+++.++++.+.+.+.++.++...+
T Consensus 376 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~ 453 (481)
T TIGR00879 376 --GSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFI 453 (481)
T ss_pred --CcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceeh
Confidence 00001123333444455555666666776777789999999999999999999999999999999998877765544
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCH
Q 012627 406 VFGGLVVIMSAFIYFFLPETKQVPI 430 (459)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (459)
..++++++.+++.+++.+|+++++.
T Consensus 454 ~~~~~~~~~~i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 454 FFGGLNVLGLIFVYFFLPETKGRTL 478 (481)
T ss_pred hHHHHHHHHHHHHheecccCCCCCh
Confidence 4444444444555556677665543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=300.15 Aligned_cols=357 Identities=14% Similarity=0.207 Sum_probs=244.2
Q ss_pred HHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHH--------HHHHHHHhhhhhhhhcchhhHH
Q 012627 37 TSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISM--------LLLGRIFLGMGIGFGNQAVPLY 108 (459)
Q Consensus 37 ~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~ 108 (459)
.++.++++.+++++.|+++||+|||+++.+++++++++++++++++|++. ++++|+++|++.|+.++...++
T Consensus 63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~ 142 (490)
T PRK10642 63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIF 142 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHH
Confidence 57888999999999999999999999999999999999999999999875 8999999999999999999999
Q ss_pred HHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccc------cccCchhhHHHHhhHHHHHHHHHHhcccCCChhhHHhc
Q 012627 109 LSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTE------KIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQ 182 (459)
Q Consensus 109 i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~------~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~~~~ 182 (459)
+.|++|+++|+++.++...+..+|.++++.+..... ....+|||+.|++.++++++.+++...+||+|++...+
T Consensus 143 ~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~ 222 (490)
T PRK10642 143 VAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHV 222 (490)
T ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHH
Confidence 999999999999999999999999888886642221 12357999999998877666555666799999875332
Q ss_pred CCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHHH
Q 012627 183 GKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ 262 (459)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (459)
++.++..+ +...++.+.++++++++. .+.. .... ...+.....++....|.|.+++
T Consensus 223 ~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~-~~~~-~~~~-~~~~~~~~~~~~~~~~~p~~l~ 278 (490)
T PRK10642 223 DKLEQGDR---------------------EGLQDGPKVSFKEIATKH-WRSL-LTCI-GLVIATNVTYYMLLTYMPSYLS 278 (490)
T ss_pred Hhhhhhcc---------------------ccccccccCCHHHHHHHh-HHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 21111000 000001133455665532 2222 2222 2223334556677789999986
Q ss_pred H-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 012627 263 S-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIV 341 (459)
Q Consensus 263 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (459)
+ +|++..+..+......++.+++.++.|+++||+|||+.+..+.....+.......... . .........
T Consensus 279 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~ 348 (490)
T PRK10642 279 HNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILIN---------S-NVIGLIFAG 348 (490)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHh---------C-CCHHHHHHH
Confidence 5 7888877777777788889999999999999999998766554433322222111110 0 111222222
Q ss_pred HHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHH
Q 012627 342 ICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK-FGIFLVFGGLVVIMSAFIYF 420 (459)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 420 (459)
..+.+++.+...+.. ..+..|.+|++.|+++.|+.+.....++.++|.+.+.+.+..+ +.....+..+..+++++..+
T Consensus 349 ~~~~g~~~~~~~g~~-~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~ 427 (490)
T PRK10642 349 LLMLAVILNCFTGVM-ASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV 427 (490)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence 222333322222222 3344689999999999998777788888999999999877543 23233233344444455556
Q ss_pred hcCCCCCC
Q 012627 421 FLPETKQV 428 (459)
Q Consensus 421 ~~~~~~~~ 428 (459)
++||++++
T Consensus 428 ~~pes~~~ 435 (490)
T PRK10642 428 TMKETANR 435 (490)
T ss_pred HhccccCC
Confidence 67887554
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=345.22 Aligned_cols=402 Identities=34% Similarity=0.639 Sum_probs=317.2
Q ss_pred CchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhh---hHHHHHHHHHHhhhhhhhhcchh
Q 012627 29 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV---HISMLLLGRIFLGMGIGFGNQAV 105 (459)
Q Consensus 29 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~ 105 (459)
++.+.+++.+...+|..+|+++.|+++||+|||+.+.++.++..+++++.++++ |++.+.++|++.|++.|...+..
T Consensus 44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~ 123 (451)
T PF00083_consen 44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVS 123 (451)
T ss_pred hHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 456789999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccC-chhhHHHHhhHHHHHHHHHHhcccCCChhhHHhcCC
Q 012627 106 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHP-WGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGK 184 (459)
Q Consensus 106 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~-~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~~~~~~ 184 (459)
..++.|..|+++|++..++.+.+..+|.+++..++........ .+||..+++.++++++..+..+++||||+|+..++|
T Consensus 124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~ 203 (451)
T PF00083_consen 124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGR 203 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccc
Confidence 9999999999999999999999999999999988654433232 569999999999998887778889999999999999
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHHHHc
Q 012627 185 LDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSL 264 (459)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (459)
.+|+++.+++.++.+..+.+.++..++.++.++.+.+++++++.+..++.....+.+..+....+.+...++.+.+++..
T Consensus 204 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~ 283 (451)
T PF00083_consen 204 DEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENA 283 (451)
T ss_pred ccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccccccc
Confidence 99999999997766555544444433333333333567788877653333333332555555666677778888888777
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 012627 265 GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICL 344 (459)
Q Consensus 265 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (459)
+.+.. ........+...++.+++.++.||+|||+.+..+...+.++.+.+...... ..+. +.......+....+
T Consensus 284 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~i~~~~l 357 (451)
T PF00083_consen 284 GISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFL--GVSS--SSWWSILSIVFLAL 357 (451)
T ss_pred ccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccc--cccc--ccccccccceeeee
Confidence 77665 333445567777788888899999999999988887777766665411100 0100 01112333444445
Q ss_pred HHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHhcC
Q 012627 345 FVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK-FGIFLVFGGLVVIMSAFIYFFLP 423 (459)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 423 (459)
....++.++.+..+.+..|.+|++.|+++.++....+++++++.+.+...+.+..+ ...+.++++++.+..++.++++|
T Consensus 358 ~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lp 437 (451)
T PF00083_consen 358 FFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLP 437 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEe
Confidence 55666767788888888999999999999999999999999999999988887776 67777888888888888889999
Q ss_pred CCCCCCHHHHHHH
Q 012627 424 ETKQVPIEEIYLL 436 (459)
Q Consensus 424 ~~~~~~~~~~~~~ 436 (459)
||++++.+|++++
T Consensus 438 ET~g~~l~ei~~~ 450 (451)
T PF00083_consen 438 ETKGKTLEEIQEM 450 (451)
T ss_pred eCCCCCHHHHHhh
Confidence 9999999998875
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=270.05 Aligned_cols=369 Identities=15% Similarity=0.111 Sum_probs=269.9
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.++.++|..|+|++.+++++.|.++-.++|.++||.++|+.+.+++++.++..++++++++.+.+.++.+++|..+|..+
T Consensus 56 ~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gw 135 (448)
T COG2271 56 IEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGW 135 (448)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC
Confidence 44556888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hcccCCChhhHHh
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVE 181 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p~~~~~ 181 (459)
|++...++.|+|++|||+..++++++.++|..+.|++..........+||..|++.++++++..+. ++..+|+|+..--
T Consensus 136 pp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GL 215 (448)
T COG2271 136 PPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGL 215 (448)
T ss_pred cHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCC
Confidence 999999999999999999999999999999999999852233344458999999999998887555 5668999853210
Q ss_pred cCCHHHHHHHHHHHcCCCcchHHHHHHHHH-HHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHH
Q 012627 182 QGKLDEARKVLEKVRGTANVDAEFSDLIDA-SNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVI 260 (459)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (459)
++.||- .++..+. +++++....+.++++.....+...++.+++..++....-+.+..|.|.|
T Consensus 216 -P~ie~~----------------~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~Y 278 (448)
T COG2271 216 -PPIEEY----------------RGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLY 278 (448)
T ss_pred -CCHHHh----------------hcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 011110 0011111 1111111134555555554444456666688888888999999999999
Q ss_pred HHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh--CCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHH
Q 012627 261 FQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKF--GRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIF 337 (459)
Q Consensus 261 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (459)
+.+ .|++..++......+-+++++|++++||++||+ |||.+..+.+.+.....++.. +.. +..+.++
T Consensus 279 L~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~------w~~----~~~~~~l 348 (448)
T COG2271 279 LSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLY------WLA----PNGSYLL 348 (448)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH------HcC----CCccHHH
Confidence 976 899999999999999999999999999999997 455544322222221111111 111 1222233
Q ss_pred HHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 012627 338 LVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLL-FTALIAQAFLAALCHLKFGIFLVFGGLVVIMSA 416 (459)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (459)
..++....++... +...+.-..+.|..|++..|++.|+...++++ |...+....+.+.|..||...++...++.+++.
T Consensus 349 ~~~~l~~iGf~Iy-GPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~ 427 (448)
T COG2271 349 DAILLFIIGFLIY-GPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAI 427 (448)
T ss_pred HHHHHHHHHHHHh-hHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHH
Confidence 3333333333221 11123334457999999999999999999999 888888889998888776655555444444444
Q ss_pred HHH
Q 012627 417 FIY 419 (459)
Q Consensus 417 ~~~ 419 (459)
+++
T Consensus 428 lll 430 (448)
T COG2271 428 LLL 430 (448)
T ss_pred HHH
Confidence 443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=266.66 Aligned_cols=352 Identities=17% Similarity=0.172 Sum_probs=269.0
Q ss_pred hhhccCccccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 012627 15 RKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFL 94 (459)
Q Consensus 15 ~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 94 (459)
...+-.+..+++|+|..+.|++.|.|.+++.++.++...+.||+.||++++..+.++.++++++++++||+.++++|++.
T Consensus 32 ~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~ 111 (394)
T COG2814 32 PVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALA 111 (394)
T ss_pred HHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33344445889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hcccC
Q 012627 95 GMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLP 173 (459)
Q Consensus 95 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l~ 173 (459)
|+..|..++...++..+..|+++|++++++...+.+++.++|.+++ ...-+.+|||..|+..+.++++..+. +..+|
T Consensus 112 g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLG--t~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 112 GLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLG--TFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999994 44455679999999999999988665 55688
Q ss_pred CChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCc---hhHHhhhcCCCchHHHHHHHhHHHhhcch
Q 012627 174 ETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNP---FRNLFKKKNRPQLVIGALGIPAFQQLTGM 250 (459)
Q Consensus 174 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (459)
|+... ++.+.+ ..+.+|++..+... +..++.+.+.
T Consensus 190 --~~~~~-----------------------------------~~~~~~~~~~~~~l~~p~v~~~l-----~~t~l~~~g~ 227 (394)
T COG2814 190 --PSEIS-----------------------------------GSLPGPLRTLLRLLRRPGVLLGL-----LATFLFMTGH 227 (394)
T ss_pred --CccCC-----------------------------------CCCCcchhHHHHHhcCchHHHHH-----HHHHHHHcch
Confidence 21000 001122 22333443322222 3344455556
Q ss_pred hHHHHhHHHHHH-HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCC
Q 012627 251 NSILFYAPVIFQ-SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKP 329 (459)
Q Consensus 251 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (459)
+...+|...+++ ..|++....++....++++..+|..++|++.|| +.|+.+.....+..+.++.+.+..
T Consensus 228 F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~--------- 297 (394)
T COG2814 228 FALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTG--------- 297 (394)
T ss_pred hhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc---------
Confidence 666666655555 489999999999999999999999999999999 877777766565555555544432
Q ss_pred CCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 012627 330 LPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGG 409 (459)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (459)
.+.+..+....+.++......... .....+.. ++.++.+.+++....++|..++..+.|.+.|+.++....+.++
T Consensus 298 ---~~~~~~~~~~~~wg~a~~~~~~~~-~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a 372 (394)
T COG2814 298 ---ASPALALALLFLWGFAFSPALQGL-QTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGA 372 (394)
T ss_pred ---chHHHHHHHHHHHHHHhhhhhhHH-HHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 222334444444444433332222 22223422 4678999999999999999999999999999998888888877
Q ss_pred HHHHHHHHHHHhcCCC
Q 012627 410 LVVIMSAFIYFFLPET 425 (459)
Q Consensus 410 ~~~~~~~~~~~~~~~~ 425 (459)
+..+.+..+.+...+.
T Consensus 373 ~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 373 ALLLLALLLALLSARK 388 (394)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7777777766555443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=278.54 Aligned_cols=343 Identities=16% Similarity=0.187 Sum_probs=243.3
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+++|+|+.+.+++.+++.+++.++++++|+++||+|||+++..+.++.+++.++++++++++.++++|+++|++.+...
T Consensus 45 ~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~ 124 (426)
T PRK12307 45 KADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEY 124 (426)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHH
Confidence 45677788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCChhhHHhc
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQ 182 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~~~~ 182 (459)
+....++.|++|+++|+++.++...+.++|.++++.+... ..+..+||+.|++..+..++........||++++..++
T Consensus 125 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~--l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~ 202 (426)
T PRK12307 125 ACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS--FAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAK 202 (426)
T ss_pred HHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHH--HcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhh
Confidence 9999999999999999999999999999999999988433 33456899999886554443333333356665432111
Q ss_pred CCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHHH
Q 012627 183 GKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ 262 (459)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (459)
.+. .++.. +...+..+.+++++++++..+....... ..+......+....+.|.+++
T Consensus 203 ~~~------------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 259 (426)
T PRK12307 203 LSG------------KGKHS---------QSAWSVFSLSMKGLFNRAQFPLTLCVFI--VLFSIFGANWPIFGLLPTYLA 259 (426)
T ss_pred hhc------------ccccc---------ccchhhhhHHHHHHHhhchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 000 00000 0000001123455665554433222211 222223333445678898888
Q ss_pred HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 012627 263 SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVI 342 (459)
Q Consensus 263 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (459)
+.|+++.+.+.......++.+++.++.+++.||++||+....+.....+..+...... . . ..... ..
T Consensus 260 ~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~-~~~~~-~~ 326 (426)
T PRK12307 260 GEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIP----------Q-D-NYLLL-GA 326 (426)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc----------c-c-cHHHH-HH
Confidence 8899888889888889999999999999999999999877666554444333222110 0 1 11111 11
Q ss_pred HHHHHHH-hhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 012627 343 CLFVLAY-GRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGI 403 (459)
Q Consensus 343 ~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (459)
..++.+. ..+..+....++.|.+|++.|+++.|+.+....+++.++|.+.+.+.+..+...
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~ 388 (426)
T PRK12307 327 CLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGA 388 (426)
T ss_pred HHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHH
Confidence 1222211 112223333456799999999999999999999999999999999998887554
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=271.33 Aligned_cols=341 Identities=18% Similarity=0.246 Sum_probs=226.7
Q ss_pred HHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHhhhhhhhhcchh
Q 012627 34 TLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHIS--------MLLLGRIFLGMGIGFGNQAV 105 (459)
Q Consensus 34 ~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~ 105 (459)
+.+.+..+++..++++++|+++||+|||+++..++++++++++++++++++. .++++|+++|++.|+.++..
T Consensus 66 ~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~ 145 (432)
T PRK10406 66 AGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTS 145 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhH
Confidence 3444555556669999999999999999999999999999999999998864 69999999999999999999
Q ss_pred hHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhcccc------ccCchhhHHHHhhHHHHHHHHHHhcccCCChhhH
Q 012627 106 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEK------IHPWGWRLSLGLATVPATLMFVGGLFLPETPNSL 179 (459)
Q Consensus 106 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~------~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~ 179 (459)
.+++.|++|+++|+++.++...+...|.++++.+...... ...+|||++|++.++++++.......+||+|++.
T Consensus 146 ~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~ 225 (432)
T PRK10406 146 ATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQE 225 (432)
T ss_pred HHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 9999999999999999999999999998888876433221 1246899999998888877666566688876421
Q ss_pred HhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHH
Q 012627 180 VEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPV 259 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (459)
.+ +++++.+++++++++..+ .... ...+.....++....|.|.
T Consensus 226 ~~---------------------------------~~~~~~~~~~l~~~~~~~---~~~~-~~~~~~~~~~~~~~~~lp~ 268 (432)
T PRK10406 226 TR---------------------------------ALKEAGSLKGLWRNRRAF---IMVL-GFTAAGSLCFYTFTTYMQK 268 (432)
T ss_pred Hh---------------------------------hhcccccHHHHHhhHHHH---HHHH-HHHHHHHHHHHHHHHHHHH
Confidence 00 000122455666543221 1111 1222223445667788999
Q ss_pred HHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHH
Q 012627 260 IFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFL 338 (459)
Q Consensus 260 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (459)
++++ +|++..+.+.......+...++.++.|+++||++||+.+.....+..+......... . . . ...+..
T Consensus 269 ~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~-~----~--~~~~~~ 339 (432)
T PRK10406 269 YLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSAL--Q-N----V--SSPYAA 339 (432)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH--H-c----C--CcHHHH
Confidence 8865 799888888888887888888899999999999999876544433222221111111 0 0 0 111111
Q ss_pred HHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHH-HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHH
Q 012627 339 VIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLF-TALIAQAFLAALCHLK-FGIFLVFGGLVVIMSA 416 (459)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 416 (459)
+....+.....+.. .+....+.+|.+|++.|+++.|+.+..++.. +...|.+.+. .+..+ +...+++.+++.++++
T Consensus 340 ~~~~~~~~~~~~~~-~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~-l~~~g~~~~~~~~~~~~~~i~~ 417 (432)
T PRK10406 340 FGLVMCALLIVSFY-TSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALS-LKSIGMETAFFWYVTLMAVVAF 417 (432)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHH
Confidence 11111111111111 1233456689999999999999998877753 4456665664 45444 4444444445555555
Q ss_pred HHHHhc
Q 012627 417 FIYFFL 422 (459)
Q Consensus 417 ~~~~~~ 422 (459)
+..+++
T Consensus 418 ~~~~~l 423 (432)
T PRK10406 418 LVSLML 423 (432)
T ss_pred HHHHHh
Confidence 544444
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=281.13 Aligned_cols=367 Identities=10% Similarity=0.005 Sum_probs=248.1
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHhhhh
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC-----AVHISMLLLGRIFLGMG 97 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~ 97 (459)
.+++|+|..+.|++.+.+.+++.++++++|+++||+|||+++..++++++++++..++ ++|++.+++.|+++|++
T Consensus 56 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 135 (467)
T PRK09556 56 ISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFF 135 (467)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999999998888887776665 58999999999999999
Q ss_pred hhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccc-cCchhhHHHHhhHHHHHHHHHH-hcccCCC
Q 012627 98 IGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKI-HPWGWRLSLGLATVPATLMFVG-GLFLPET 175 (459)
Q Consensus 98 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~-~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~ 175 (459)
.+...|...+++.||+|+++||++++++..+.++|.+++++++...... ...+||..|.+.++++++..+. +++++++
T Consensus 136 ~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~ 215 (467)
T PRK09556 136 QSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDS 215 (467)
T ss_pred HhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999885333221 1126999998888877766444 4446777
Q ss_pred hhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhH-----HhhhcCCCchHHHHHHHhHHHhhcch
Q 012627 176 PNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRN-----LFKKKNRPQLVIGALGIPAFQQLTGM 250 (459)
Q Consensus 176 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (459)
|+.....+ .++ .. .... ..+. +..++.+.+..+ .++++. ++...+..++....+
T Consensus 216 p~~~~~~~-~~~---~~---~~~~--~~~~-------~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~ 274 (467)
T PRK09556 216 PEELGWGK-AEE---IF---GEPI--SEED-------KETESTDMTKWQIFVEYVLKNPV-----IWLLCFANIFLYIVR 274 (467)
T ss_pred hhhcCCCC-hhh---cc---cCcc--chhh-------hccccccCcHHHHHHHHHHcChH-----HHHHHHHHHHHHHHH
Confidence 64211111 110 00 0000 0000 000000111111 233322 222223444445555
Q ss_pred hHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCC
Q 012627 251 NSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKP 329 (459)
Q Consensus 251 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (459)
+....|.|.|+++ +|++..+++.......++.+++.++.|+++||++||+....................
T Consensus 275 ~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~--------- 345 (467)
T PRK09556 275 IGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQH--------- 345 (467)
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHh---------
Confidence 6678899998865 899999999998889999999999999999999998865543332222211111110
Q ss_pred CCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHH-HHHHHHHHHHHHHh-----------
Q 012627 330 LPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLL-FTALIAQAFLAALC----------- 397 (459)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~----------- 397 (459)
. ...+...+..+..+.... +..........|.+|++.+|++.|+.+..+++ +.+++|.+.|.+.|
T Consensus 346 -~-~~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~ 422 (467)
T PRK09556 346 -A-TSEYMYLASLFALGFLVF-GPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGY 422 (467)
T ss_pred -c-CcHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccc
Confidence 0 111222222222222211 11111123445999999999999999999997 67999999999999
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHhc
Q 012627 398 -HLKFGIFLVFGGLVVIMSAFIYFFL 422 (459)
Q Consensus 398 -~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (459)
..+|...+.+..++.+++.+..+.+
T Consensus 423 ~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 423 TLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666655555556555554443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=266.06 Aligned_cols=337 Identities=14% Similarity=0.074 Sum_probs=224.5
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+++|+|..+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+.....+|++.++++|+++|++.+. .
T Consensus 18 ~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~-~ 96 (368)
T TIGR00903 18 AEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPF-L 96 (368)
T ss_pred HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHH-H
Confidence 456778888889999999999999999999999999999987666555545443333347999999999999999996 4
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hcccCCChhhHHh
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVE 181 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p~~~~~ 181 (459)
+.....++|++|+++|++++++...+.++|.+++++++.... +..|||+.|++.++++++..++ ++++||+|++..
T Consensus 97 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~--~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~- 173 (368)
T TIGR00903 97 LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIY--TAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAA- 173 (368)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-
Confidence 566666799999999999999999999999999999965543 4568999999988887776544 556899886421
Q ss_pred cCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHH
Q 012627 182 QGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF 261 (459)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (459)
+..+ . ++ . .++++++++++..+... +..++....++.+..|+|.++
T Consensus 174 --~~~~---------------~--~~------~----~~~~~~ll~~~~~~~~~-----~~~~~~~~~~~~~~~wlp~~L 219 (368)
T TIGR00903 174 --EGFG---------------F--KD------A----VKEFGALAGRKDLWIIG-----AILGFGVALFDNLAIWLEAAL 219 (368)
T ss_pred --CCcc---------------h--HH------H----HHHHHHHHcChhHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 00 0 01245666655432222 445556666778889999999
Q ss_pred HHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcc---eeeh-hhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHH
Q 012627 262 QSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRA---FFLE-AGTEMIIYMVIVAITLALEFGEGKPLPKGIGIF 337 (459)
Q Consensus 262 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (459)
++.|++.. .+.......+.+.++ .+++.||..||+ .... ......+....+. . . . + .+.
T Consensus 220 ~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~--~----~-----~-~-~~~ 282 (368)
T TIGR00903 220 RPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALA--F----E-----L-N-RLA 282 (368)
T ss_pred HHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHH--H----c-----c-c-cHH
Confidence 88888754 455544444444444 577888876542 2111 1111111111111 0 0 0 1 112
Q ss_pred HHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHH
Q 012627 338 LVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK-FGIFLVFGGLVVIMSA 416 (459)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 416 (459)
.+....+.+++..... +..+.+.+|.+|++.|+++.|+.+..+++++..+|.+.+.+.. + ...+..+++...+.++
T Consensus 283 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~ 359 (368)
T TIGR00903 283 LFAFIGIAGLLMLPAY-AIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFA 359 (368)
T ss_pred HHHHHHHHHHhhhhhH-HHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHH
Confidence 2222222333222222 3345677899999999999999999999999999999988774 3 2334444444444433
Q ss_pred H
Q 012627 417 F 417 (459)
Q Consensus 417 ~ 417 (459)
.
T Consensus 360 ~ 360 (368)
T TIGR00903 360 I 360 (368)
T ss_pred H
Confidence 3
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=274.10 Aligned_cols=361 Identities=16% Similarity=0.165 Sum_probs=246.7
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
++++|++..+.|++.+++.+++.+++++.|+++||+|||+++..++++++++++++++++|++.+++.|+++|++.+...
T Consensus 35 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 114 (412)
T TIGR02332 35 GKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFL 114 (412)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHH
Confidence 66788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhcccc----ccCchhhHHHHhhHHHHHHHHH-HhcccCCChh
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEK----IHPWGWRLSLGLATVPATLMFV-GGLFLPETPN 177 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~----~~~~gwr~~f~~~~~~~~~~~~-~~~~l~e~p~ 177 (459)
+....++.|++|+++|+++++++..+.++|.+++++++..... .+..|||+.|++.++++++..+ .++++||+|+
T Consensus 115 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 115 PGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 9999999999999999999999999999999999999655432 1346899999999888776644 4566899885
Q ss_pred hHHhcCCHHHHHHHHHHHcCCC-cchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHh
Q 012627 178 SLVEQGKLDEARKVLEKVRGTA-NVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFY 256 (459)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (459)
...- -..++.+...+..+... +.+.+.... .+.....+..++++++ +. .+...+..++....++.+..|
T Consensus 195 ~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~ 264 (412)
T TIGR02332 195 KAKW-LDEEDKKALKEMIDNDQLTLEQPEGAF---AHAAMPQRSMLREIFT----PA--IMLYTLAYFCLTNTLSAINIW 264 (412)
T ss_pred cCCC-CCHHHHHHHHHHHHhcccccccccccc---ccccccHHHHHHHhcC----hH--HHHHHHHHHHHHHHHHHHHHH
Confidence 2100 00111111111111000 000000000 0000000111222221 11 122224455556667778899
Q ss_pred HHHHHHHc--CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeeh-hhHHHHHHHHHHHHHHHHHhcCCCCCCch
Q 012627 257 APVIFQSL--GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLE-AGTEMIIYMVIVAITLALEFGEGKPLPKG 333 (459)
Q Consensus 257 ~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (459)
.|.+++++ +++..+++.......++.+++.++.++++||+++|+.... ......++. ++... . ...
T Consensus 265 ~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~------~----~~~ 333 (412)
T TIGR02332 265 TPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLASA------T----DHN 333 (412)
T ss_pred HHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHh------c----CCH
Confidence 99999874 6677788888999999999999999999999997764322 222222211 11110 0 011
Q ss_pred hHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHH
Q 012627 334 IGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK-FGIFLVF 407 (459)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 407 (459)
............+.... .+..+....|.+|++.|+++.|+.+..++++++++|.+.+.+.+..+ +...+.+
T Consensus 334 --~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~ 405 (412)
T TIGR02332 334 --LIQLLGIIMASMGSFSA-MAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWF 405 (412)
T ss_pred --HHHHHHHHHHHHHhhhh-hhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHH
Confidence 11111111222221111 22334445678999999999999999999999999999999998765 5544433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=271.41 Aligned_cols=352 Identities=17% Similarity=0.146 Sum_probs=254.1
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+++|.++.+.+++.+.+.++..++++++|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+...
T Consensus 42 ~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~ 121 (406)
T PRK11551 42 AQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGAL 121 (406)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hcccCCChhhHHh
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVE 181 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p~~~~~ 181 (459)
+...+++.|++|+++|++++++...+..+|..+++.++.. ..+..+||+.|++.++..++..+. ..++||+|++..+
T Consensus 122 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 199 (406)
T PRK11551 122 PNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVL--AAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQA 199 (406)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhc
Confidence 9999999999999999999999999999999999998543 334568999999988766655443 4568998754322
Q ss_pred cCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHH
Q 012627 182 QGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF 261 (459)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (459)
+++.++.+ ...+..++.+..+..... . ...+......+....+.|.++
T Consensus 200 ~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~p~~~ 247 (406)
T PRK11551 200 AGAGKQRA------------------------------PVLRALFGEGRATATLLL-W-ISYFFTLIVLYFLLNWLPSLL 247 (406)
T ss_pred cCcchhhh------------------------------hhHHHHhhhhhhhHHHHH-H-HHHHHHHHHHHHHHHHHHHHH
Confidence 11110000 000111111111111111 1 122333334456677889999
Q ss_pred HHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 012627 262 QSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIV 341 (459)
Q Consensus 262 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (459)
++.|+++.+.+.......++.+++.++.|++.||++||+.+........++..++... + ..+.....
T Consensus 248 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----------~--~~~~~~~~ 314 (406)
T PRK11551 248 VGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA-----------P--SFAGMLLA 314 (406)
T ss_pred HhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-----------C--cHHHHHHH
Confidence 8899999999999999999999999999999999999987765444333333322211 1 11222222
Q ss_pred HHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHH
Q 012627 342 ICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK-FGIFLVFGGLVVIMSAFIYF 420 (459)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 420 (459)
..+.+.+... ..+....+..|.+|++.|+++.|+.+....++..++|.+.|.+.++.+ +...+.....+.+.+.+..+
T Consensus 315 ~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 315 GFAAGLFVVG-GQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHHHHHHh-HHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 3333333222 223445566899999999999999999999999999999999988654 44444444445555444444
Q ss_pred hc
Q 012627 421 FL 422 (459)
Q Consensus 421 ~~ 422 (459)
..
T Consensus 394 ~~ 395 (406)
T PRK11551 394 LL 395 (406)
T ss_pred HH
Confidence 33
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=270.29 Aligned_cols=345 Identities=16% Similarity=0.147 Sum_probs=233.4
Q ss_pred HHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHhhhhhhhhcchhhHHH
Q 012627 38 SSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHIS--------MLLLGRIFLGMGIGFGNQAVPLYL 109 (459)
Q Consensus 38 s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i 109 (459)
++.+++..+++++.|+++||+|||+++..+.++++++++++++++|++ .++++|+++|++.|+.++....++
T Consensus 71 ~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~ 150 (438)
T PRK09952 71 GVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLA 150 (438)
T ss_pred HHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHH
Confidence 456677889999999999999999999999999999999999999987 588999999999999999999999
Q ss_pred HhcCCCccchhHHHHHHHHHHHHHHHHHHHHhcccc------ccCchhhHHHHhhHHHHHHHHHHhcccCCChhhHHhcC
Q 012627 110 SEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEK------IHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQG 183 (459)
Q Consensus 110 ~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~------~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~~~~~ 183 (459)
.|++|+++|++..+....+..+|.+++..+...... ...+|||++|++.+++.++...+...+||+|++...++
T Consensus 151 ~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~ 230 (438)
T PRK09952 151 VESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQH 230 (438)
T ss_pred HHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHh
Confidence 999999999999999999999999998766433221 12468999999988877665555556889886532221
Q ss_pred CHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchh-HHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHHH
Q 012627 184 KLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFR-NLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ 262 (459)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (459)
+.++. +.+.+.. .++++++. ..... ...+......+....|.|.+++
T Consensus 231 ~~~~~----------------------------~~~~~~~~~l~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~y~~ 278 (438)
T PRK09952 231 EQAAA----------------------------KKRIPVIEALLRHPGA---FLKII-ALRLCELLTMYIVTAFALNYST 278 (438)
T ss_pred hcccc----------------------------cccCCHHHHHHHchHH---HHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 11000 0011111 12222211 11111 1223334455666778888875
Q ss_pred H-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 012627 263 S-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIV 341 (459)
Q Consensus 263 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (459)
+ +|++...........++..+++.++.|+++||++||+.+..+..+..++........ . .....+..+..
T Consensus 279 ~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~ 349 (438)
T PRK09952 279 QNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMAL--E-------AQSIFWIVFFS 349 (438)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--H-------cCChHHHHHHH
Confidence 4 788776555555566777788889999999999999877655444333322221111 0 00112222222
Q ss_pred HHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHH-HHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHH
Q 012627 342 ICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNL-LFTALIAQAFLAALCHL--KFGIFLVFGGLVVIMSAFI 418 (459)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 418 (459)
..+.+++.+... +..+.+..|.+|++.|+++.++.+..+. +++.++|.+.+.+.+.. ++...+.+.+++.+++.+.
T Consensus 350 ~~l~~~~~~~~~-~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~ 428 (438)
T PRK09952 350 IMLANIAHDMVV-CVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMT 428 (438)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 233333333233 2335666899999999999999766654 78899999999998743 2555555666666666666
Q ss_pred HHhcCC
Q 012627 419 YFFLPE 424 (459)
Q Consensus 419 ~~~~~~ 424 (459)
.+..++
T Consensus 429 ~~~~~~ 434 (438)
T PRK09952 429 ALLMKD 434 (438)
T ss_pred HHHccc
Confidence 666655
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=270.04 Aligned_cols=356 Identities=15% Similarity=0.142 Sum_probs=247.1
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+++|.|..+.+++.+++.++..+++++.|.++||+|||+++..+.++.++++++++++++++.+++.|++.|++.+...
T Consensus 39 ~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~ 118 (405)
T TIGR00891 39 AGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEY 118 (405)
T ss_pred HHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhh
Confidence 56688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCChhhHHhc
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQ 182 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~~~~ 182 (459)
+...+++.|++|+++|++++++...+.++|.++++.++.........+||+.|++.+++.++..+....+||++++...+
T Consensus 119 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (405)
T TIGR00891 119 GSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKH 198 (405)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHh
Confidence 99999999999999999999999999999999999986554433333599999987777666665566689887654322
Q ss_pred CCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhh-cCCCchHHHHHHHhHHHhhcchhHHHHhHHHHH
Q 012627 183 GKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKK-KNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF 261 (459)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (459)
++.++.++..++..+.... .+ +..+.......+. +..+....... ...............+.|.++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~---~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 265 (405)
T TIGR00891 199 AGKALVRTMVDILYGGEHR---IA---------NIVMTLAAAMVQSAGKRWPTFVYLV-VLVLFANLYSHPIQDLLPTYL 265 (405)
T ss_pred hhhhhhhhHHHHHhccchh---hh---------hhhhhhhHHhhhhhhhhhHHHHHHH-HHHHHHHHHHhhhhhhhHHHH
Confidence 2221111111111110000 00 0000000011111 11111111111 122222222334555677777
Q ss_pred H-HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 012627 262 Q-SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVI 340 (459)
Q Consensus 262 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (459)
+ +.|++..+.+.......++.+++.++.+++.||++||+.+..+.....+........ . ...+...+
T Consensus 266 ~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~ 333 (405)
T TIGR00891 266 KADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI-----------G-ANVAVLGL 333 (405)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh-----------C-CchHHHHH
Confidence 5 489999999999999999999999999999999999987765554332222111110 0 11122222
Q ss_pred HHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh-HHHH
Q 012627 341 VICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK-FGIF 404 (459)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 404 (459)
...+.+....... +....+..|.+|++.|+++.|+.+....++..++|.+.|.+.|+.| +...
T Consensus 334 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~ 397 (405)
T TIGR00891 334 GLFFQQMLVQGIW-GILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTA 397 (405)
T ss_pred HHHHHHHHHccch-hhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence 2222333322222 3334566899999999999999999999999999999999999887 5433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=268.91 Aligned_cols=344 Identities=14% Similarity=0.099 Sum_probs=248.3
Q ss_pred cccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhh
Q 012627 22 ETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFG 101 (459)
Q Consensus 22 ~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 101 (459)
-.+++|.|+.+.|++.+.+.+++.++++++|+++||+|||+++..+.++.+++++++++++|++.++++|+++|++.+..
T Consensus 35 l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~ 114 (390)
T PRK03545 35 IAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIF 114 (390)
T ss_pred HHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 36678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hcccCCChhhHH
Q 012627 102 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLV 180 (459)
Q Consensus 102 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p~~~~ 180 (459)
.+...+++.|++|+++|++++++...+.++|.+++|+++... .+..|||+.|++.++++++..+. ...+||.|+.
T Consensus 115 ~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l--~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~-- 190 (390)
T PRK03545 115 WSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVI--GQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE-- 190 (390)
T ss_pred HHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHH--HHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--
Confidence 999999999999999999999999999999999999995443 34468999999999887776544 3446665420
Q ss_pred hcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHH
Q 012627 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVI 260 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (459)
+.++ .++.++.++++..+.... ..+...........+.+.+
T Consensus 191 ---~~~~-------------------------------~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 231 (390)
T PRK03545 191 ---HSGS-------------------------------LKSLPLLFRRPALVSLYL-----LTVVVVTAHFTAYSYIEPF 231 (390)
T ss_pred ---Ccch-------------------------------HHHHHHHHhCcHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 0000 001233444443222221 1112222223334555656
Q ss_pred HHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 012627 261 FQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLV 339 (459)
Q Consensus 261 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (459)
+++ .|++..+.+......+++.++++++.+++.||+++|+. ..+..+...+........ ...+...
T Consensus 232 l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~l~~~~------------~~~~~~~ 298 (390)
T PRK03545 232 VQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL-LIAIALLLVCLLLLLPAA------------NSEWHLS 298 (390)
T ss_pred HHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH-HHHHHHHHHHHHHHHHHh------------chHHHHH
Confidence 655 79999999999999999999999999999999987754 333332222222221111 1122333
Q ss_pred HHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 012627 340 IVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIY 419 (459)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (459)
....+.+.+.. ...+.......+..| +.|++++|+.+...++|..+++.+.|.+.++.++...+...+.+.+.+.+..
T Consensus 299 ~~~~l~g~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~ 376 (390)
T PRK03545 299 VLSIFWGIAIM-CIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWS 376 (390)
T ss_pred HHHHHHHHHHh-cchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Confidence 33334444432 222323344456666 5789999999999999999999999999999988776666666666655554
Q ss_pred HhcC
Q 012627 420 FFLP 423 (459)
Q Consensus 420 ~~~~ 423 (459)
....
T Consensus 377 ~~~~ 380 (390)
T PRK03545 377 ILIF 380 (390)
T ss_pred HHHc
Confidence 4443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=273.02 Aligned_cols=364 Identities=14% Similarity=0.056 Sum_probs=246.3
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+++|+|..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.+++++++|++.+++.|++.|++.|..+
T Consensus 50 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~ 129 (434)
T PRK11663 50 LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGW 129 (434)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccc
Confidence 45688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHH-HhcccCCChhhHHh
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFV-GGLFLPETPNSLVE 181 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~-~~~~l~e~p~~~~~ 181 (459)
+...+++.|++|+++|++++++.+.+.++|.++++.+.... .+..|||+.|++.+++.++..+ ..+++||+|++...
T Consensus 130 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l--~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~ 207 (434)
T PRK11663 130 PVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAI--ALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGL 207 (434)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCC
Confidence 99999999999999999999999999999999999885443 3456899999998887665543 34567888753211
Q ss_pred cCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHH
Q 012627 182 QGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF 261 (459)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (459)
+...++.++ . ++ ..++.++.+.+.++.++....+...++.+.+..+........+..|.|.++
T Consensus 208 ~~~~~~~~~-------------~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l 270 (434)
T PRK11663 208 PSVGEWRHD-------------A-LE---LAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYM 270 (434)
T ss_pred CCccccccc-------------c-cc---cchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110000000 0 00 000000011122232221111111111121233334444556777889998
Q ss_pred H-HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhC--CcceeehhhH-HHHHHHHHHHHHHHHHhcCCCCCCchhHHH
Q 012627 262 Q-SLGFGSGAALYSSVITGIALCIAALISMAFVDKFG--RRAFFLEAGT-EMIIYMVIVAITLALEFGEGKPLPKGIGIF 337 (459)
Q Consensus 262 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (459)
+ ++|++..+++.......++..++.++.|++.||+. +|+....... ...+....+... . .. + ...
T Consensus 271 ~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~-----~----~~-~-~~~ 339 (434)
T PRK11663 271 SETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM-----P----FA-S-YVM 339 (434)
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc-----c----cc-c-HHH
Confidence 5 48999999999999999999999999999999983 3333221111 111111111111 0 00 1 111
Q ss_pred HHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 012627 338 LVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAF 417 (459)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (459)
........++. .............|.+|++.|+++.|+.+...++++.++|.+.+.+.++.++...+...+++.+++.+
T Consensus 340 ~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~ 418 (434)
T PRK11663 340 QAACFFTIGFF-VFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISAL 418 (434)
T ss_pred HHHHHHHHHHH-HhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 11111111211 11111122334579999999999999999999999999999999999988877666655555544443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=269.99 Aligned_cols=368 Identities=15% Similarity=0.158 Sum_probs=244.4
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+++|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|++.|++.+...
T Consensus 47 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~ 126 (496)
T PRK03893 47 QGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEY 126 (496)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCChhhHHhc
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQ 182 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~~~~ 182 (459)
+....++.|++|+++|++++++...+.++|..+++.++... .+..+||+.|++.++..++.++....+||++++..++
T Consensus 127 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l--~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~ 204 (496)
T PRK03893 127 GSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLV--VPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKH 204 (496)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhc
Confidence 99999999999999999999999999999999999995443 4456899999886655554444455578876543322
Q ss_pred CCHHHHHHHHHHHcCCCcchHHHH-HHHHH----HHHHhhhcCch-------------hHH-hh-hcCCCchHHHHHHHh
Q 012627 183 GKLDEARKVLEKVRGTANVDAEFS-DLIDA----SNAARAIKNPF-------------RNL-FK-KKNRPQLVIGALGIP 242 (459)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~-------------~~~-~~-~~~~~~~~~~~~~~~ 242 (459)
++.++.++..+.....+....... ..... ..........+ ... .+ ....+....... ..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 283 (496)
T PRK03893 205 AGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLM-VV 283 (496)
T ss_pred cccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHH-HH
Confidence 211111111111000000000000 00000 00000000000 000 00 111111111111 12
Q ss_pred HHHhhcchhHHHHhHHHHHH-HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHH
Q 012627 243 AFQQLTGMNSILFYAPVIFQ-SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLA 321 (459)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 321 (459)
.+...........+.|.+++ ++|++..+.+.......++.+++.++.|++.||++||+.+..+..+..+..+.....
T Consensus 284 ~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-- 361 (496)
T PRK03893 284 VLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI-- 361 (496)
T ss_pred HHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--
Confidence 22222222345678899985 689999999999999999999999999999999999987665544333332222111
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 012627 322 LEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKF 401 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (459)
.....+.........+ +.+.+..+....+..|.+|++.|++++|+.+....+++.++|.+.|.+.+..++
T Consensus 362 ---------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~ 431 (496)
T PRK03893 362 ---------GGANVWVLGLLLFFQQ-MLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDL 431 (496)
T ss_pred ---------cccHHHHHHHHHHHHH-HHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCCh
Confidence 0111122212111111 112222333345667999999999999999999999999999999999998876
Q ss_pred HHHH
Q 012627 402 GIFL 405 (459)
Q Consensus 402 ~~~~ 405 (459)
...+
T Consensus 432 ~~~~ 435 (496)
T PRK03893 432 GTAL 435 (496)
T ss_pred HHHH
Confidence 5444
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=264.38 Aligned_cols=349 Identities=12% Similarity=0.070 Sum_probs=246.5
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+++|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+++++++|++.+++.|+++|++.+...
T Consensus 36 ~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~ 115 (393)
T PRK09705 36 RQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQ 115 (393)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHh
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhccc-CCChhhHHh
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL-PETPNSLVE 181 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l-~e~p~~~~~ 181 (459)
+....++.|++| ++|+++++++..+.++|..+++.++...... ..+||+.+.+.++..++..+.++.. ++.|+
T Consensus 116 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 189 (393)
T PRK09705 116 AVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQH-SETWYQTLAWWALPAVVALFAWWWQSAREVA---- 189 (393)
T ss_pred hhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc----
Confidence 999999999997 7799999999999999999998885443321 2379998877666655443333322 22221
Q ss_pred cCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHH
Q 012627 182 QGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF 261 (459)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (459)
+ ++ ++ +.+.++.++++..+ ... +........+.....+.|.++
T Consensus 190 -~--~~----------------------------~~-~~~~~~~l~~~~~~----~l~-~~~~~~~~~~~~~~~~lp~~l 232 (393)
T PRK09705 190 -S--SH----------------------------KT-TTTPVRVVFTPRAW----TLG-VYFGLINGGYASLIAWLPAFY 232 (393)
T ss_pred -c--cc----------------------------CC-CcCCcccccCHhHH----HHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 00 00111222222211 111 223333445667788899999
Q ss_pred HHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 012627 262 QSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIV 341 (459)
Q Consensus 262 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (459)
+++|++..+++......+++.++++++.+++.||++||+....+..+..++..++.... ..... ..
T Consensus 233 ~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~~-~~-- 298 (393)
T PRK09705 233 IEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLP-----------LQLPV-LW-- 298 (393)
T ss_pred HHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHcc-----------chHHH-HH--
Confidence 88999999999999999999999999999999999999877766555544444332110 11111 11
Q ss_pred HHHHHHHHhhcccccceeeecccC-CcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHH-H
Q 012627 342 ICLFVLAYGRSWGPLGWLVPSELF-PLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK-FGIFLVFGGLVVIMSAF-I 418 (459)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~ 418 (459)
..+.+.+.+...+. ......+.. |++.+++..|+.+..++++..++|.+.+++.|..| +...+.+..++.+...+ .
T Consensus 299 ~~l~g~g~g~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (393)
T PRK09705 299 AMVCGLGLGGAFPL-CLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIIT 377 (393)
T ss_pred HHHHHHhccchHHH-HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence 12233333333322 222333555 56788999999999999999999999999999876 45544444444433333 3
Q ss_pred HHhcCCCCCCC
Q 012627 419 YFFLPETKQVP 429 (459)
Q Consensus 419 ~~~~~~~~~~~ 429 (459)
..+.+|++.+.
T Consensus 378 ~~~~~~~~~~~ 388 (393)
T PRK09705 378 LRFAPARFPQL 388 (393)
T ss_pred HHhccccccch
Confidence 45556665543
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=240.65 Aligned_cols=387 Identities=17% Similarity=0.196 Sum_probs=284.9
Q ss_pred cccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhh
Q 012627 22 ETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFG 101 (459)
Q Consensus 22 ~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 101 (459)
.+..++.+..+..++......+..+++..||.++|++|||+.+.+..+...+...+.+.++|+..+++.|.+.|+|.|+
T Consensus 104 l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg- 182 (528)
T KOG0253|consen 104 LDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG- 182 (528)
T ss_pred HHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-
Confidence 3566778888899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCChhhHHh
Q 012627 102 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVE 181 (459)
Q Consensus 102 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~~~ 181 (459)
.|...++-.|..|..+|...+-.. ..+.+|.+....++++.. ..+||||..+..+.+..+.+...+++|||||+...
T Consensus 183 ~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm--~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~ 259 (528)
T KOG0253|consen 183 LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVM--SNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLA 259 (528)
T ss_pred ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhh
Confidence 899999999999999999887777 999999999999965544 45689999998888877777778889999999999
Q ss_pred cCCHHHHHHHHHHHcCCCcchH-----------HHH----HHHH-HHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHH
Q 012627 182 QGKLDEARKVLEKVRGTANVDA-----------EFS----DLID-ASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQ 245 (459)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (459)
+++.+++.+.++++...|..+- +.+ +..+ +.+..++.+....+++..+.++..+.... .++.
T Consensus 260 ~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~--iwfg 337 (528)
T KOG0253|consen 260 KGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWR--IWFG 337 (528)
T ss_pred cCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHH--HHHh
Confidence 9999999999998876653211 000 0000 01112233455667776665555544333 2333
Q ss_pred hhcchhHHHHhHHHHHHHcC--------------------CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehh
Q 012627 246 QLTGMNSILFYAPVIFQSLG--------------------FGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEA 305 (459)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~g--------------------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 305 (459)
+...++........+.+..+ .+...-..-..+..+....|.++.++++||+|||+.+...
T Consensus 338 nafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~ 417 (528)
T KOG0253|consen 338 NAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALS 417 (528)
T ss_pred hHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHH
Confidence 33334444433333332211 1122234456677889999999999999999999999887
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHH
Q 012627 306 GTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFT 385 (459)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~ 385 (459)
.++..+..+++.... .+ ....+..+..-++...++. +.+.|..|++|+..|+++.|.+...+.+|+
T Consensus 418 l~~f~iflfll~~c~---------~r----n~~tvllf~arafisg~fq-vaYvYtPEVyPTavRatgvGtcSsmaRIgg 483 (528)
T KOG0253|consen 418 LILFGIFLFLLTTCK---------TR----NAYTVLLFTARAFISGAFQ-VAYVYTPEVYPTAVRATGVGTCSSMARIGG 483 (528)
T ss_pred HHHHHHHHHHHHHhc---------Cc----chhHHHHHHHHHHHhchhe-EEEEecCcccchhhhhcchhhhhhHHhhhh
Confidence 777666666554432 11 1223334444444454554 448899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 012627 386 ALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPETKQVP 429 (459)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (459)
++.|.+. ...+..-+.+.+++.+++++.++...++-.|+|+|.
T Consensus 484 I~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~ 526 (528)
T KOG0253|consen 484 IFSPVIA-MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRS 526 (528)
T ss_pred hhhhHHH-HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCC
Confidence 9999888 333333345556666666666666666666888775
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=262.16 Aligned_cols=344 Identities=18% Similarity=0.257 Sum_probs=219.8
Q ss_pred HHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHhhhhhhhhcchhhHHHHhcCCC
Q 012627 44 GLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHIS--------MLLLGRIFLGMGIGFGNQAVPLYLSEMAPA 115 (459)
Q Consensus 44 ~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~ 115 (459)
..+++++.|+++||+|||++++.+.+++.+++++++++++++ .++++|+++|++.+...+....++.|++|+
T Consensus 69 ~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~ 148 (434)
T PRK15075 69 RPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATP 148 (434)
T ss_pred hhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCc
Confidence 357899999999999999999999999999999999999987 468999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhcccc------ccCchhhHHHHhhHHHHHHHHHHhcccCCChhhHHhcCCHHHHH
Q 012627 116 KIRGAVNQLFQLTTCLGILVANLINYGTEK------IHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEAR 189 (459)
Q Consensus 116 ~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~------~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~~~~~~~~~~~ 189 (459)
++|++++++...+.++|..+++.++..... .+..|||++|++..+...+........||++++...++
T Consensus 149 ~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~------ 222 (434)
T PRK15075 149 GRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH------ 222 (434)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh------
Confidence 999999999999888888888777544321 23578999999865543332222233445432110000
Q ss_pred HHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHHHH-cCCCC
Q 012627 190 KVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGS 268 (459)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~ 268 (459)
+.+.++.++...++ ++...... ...+.....++....|.|.++++ +|++.
T Consensus 223 -------------------------~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~p~~l~~~~g~~~ 273 (434)
T PRK15075 223 -------------------------RPSMREIFRSLAAN---WRIVLAGM-LMVAMTTVSFYLITVYTPTFGKTVLHLSA 273 (434)
T ss_pred -------------------------ccccccHHHHHHHh---HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 00000111111111 11111111 22333444566778889999976 79998
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHH
Q 012627 269 GAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLA 348 (459)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (459)
.+.++......++.+++.++.|+++||++||+....+.....+........ .. .. + . .........+.+.+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~--~~--~~---~-~-~~~~~~~~~~~~~~ 344 (434)
T PRK15075 274 ADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSW--LV--AA---P-S-FARMLAVELWLSFL 344 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH--HH--cC---C-c-hHHHHHHHHHHHHH
Confidence 888888888899999999999999999999987665433322211111000 00 00 1 1 11111111222222
Q ss_pred HhhcccccceeeecccCCcccccccchHHHHHHHH-HHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHhcCCCC
Q 012627 349 YGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLL-FTALIAQAFLAALCHLKFG-IFLVFGGLVVIMSAFIYFFLPETK 426 (459)
Q Consensus 349 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 426 (459)
++.. .+....+..|.+|++.|+++.++.+..+.. ++.++|.+.+.+.|..++. ....+...+.+++.+..+...+.+
T Consensus 345 ~g~~-~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (434)
T PRK15075 345 YGSY-NGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKAAPGYWLSFAAVCGLIATLVLYRRR 423 (434)
T ss_pred HHHH-HhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence 2222 223345567999999999999997666554 5888999999998877642 111111122233333444555555
Q ss_pred CCCHHH
Q 012627 427 QVPIEE 432 (459)
Q Consensus 427 ~~~~~~ 432 (459)
+.+.+.
T Consensus 424 ~~~~~~ 429 (434)
T PRK15075 424 GARLQA 429 (434)
T ss_pred chhhhh
Confidence 554443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=263.63 Aligned_cols=371 Identities=14% Similarity=0.054 Sum_probs=241.4
Q ss_pred ccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhh----hHHHHHHHHHHhhhhhhhhc
Q 012627 27 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV----HISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 27 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~ 102 (459)
|++..+.+++.+.+.+++.++++++|+++||+|||+++..+.++.+++.+++++++ +++.+++.|++.|++.+..+
T Consensus 59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~ 138 (452)
T PRK11273 59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGW 138 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccc
Confidence 78888999999999999999999999999999999999999999999999888763 78899999999999999998
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHH-HHHHHHhccccccCchhhHHHHhhHHHHHHHHH-HhcccCCChhhHH
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGIL-VANLINYGTEKIHPWGWRLSLGLATVPATLMFV-GGLFLPETPNSLV 180 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~-~~~~l~e~p~~~~ 180 (459)
+.....+.|++|+++|+++++++..+.++|.. .+++++..... ..+||+.|++.++++++..+ ..+++||+|+...
T Consensus 139 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~--~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~ 216 (452)
T PRK11273 139 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW--FNDWHAALYMPAFAAILVALFAFAMMRDTPQSCG 216 (452)
T ss_pred hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcC
Confidence 88888999999999999999999999999874 45554322222 23799999998887777544 4566888875321
Q ss_pred hcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhH-----HhhhcCCCchHHHHHHHhHHHhhcchhHHHH
Q 012627 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRN-----LFKKKNRPQLVIGALGIPAFQQLTGMNSILF 255 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (459)
.++ .++.++ +.... . +..++.+.+.++ .++++.. +...+..++.....+....
T Consensus 217 ~~~-~~~~~~---~~~~~---------~----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~~~ 274 (452)
T PRK11273 217 LPP-IEEYKN---DYPDD---------Y----NEKHEQELTAKQIFMQYVLPNKLL-----WYIAIANVFVYLLRYGILD 274 (452)
T ss_pred CCC-hhhhhh---ccccc---------c----ccccCCCccHHHHHHHHHHcChHH-----HHHHHHHHHHHHHHHHHHH
Confidence 111 111000 00000 0 000000111222 2222221 1111233333444566778
Q ss_pred hHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhC--CcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 012627 256 YAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFG--RRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPK 332 (459)
Q Consensus 256 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (459)
+.|.++++ .|++..+++.......++.+++.++.|+++||++ ||+.... ....+..+...... . . ..
T Consensus 275 ~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~--~~~~l~~~~~~~~~-~--~-----~~ 344 (452)
T PRK11273 275 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV--FFMTLVTIATIVYW-L--N-----PA 344 (452)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHH--HHHHHHHHHHHHHH-H--h-----cc
Confidence 99999976 7899888888888888999999999999999994 3332211 11111111111110 0 0 00
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHH
Q 012627 333 GIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTAL-IAQAFLAALCHLKFGIFLVFGGLV 411 (459)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 411 (459)
...+.........+.... ........+..|.+|++.||++.|+.+...++++.+ +|.+.+.+.|+.++...+...+.+
T Consensus 345 ~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~ 423 (452)
T PRK11273 345 GNPTVDMACMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG 423 (452)
T ss_pred cChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHH
Confidence 111111122222222211 111111234468999999999999999998888765 689999999988876666555555
Q ss_pred HHHHHHHHHhcCCCCCCCHHH
Q 012627 412 VIMSAFIYFFLPETKQVPIEE 432 (459)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~ 432 (459)
.+++++......+.++|+.+|
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~ 444 (452)
T PRK11273 424 SILAVILLIVVMIGEKRHHEE 444 (452)
T ss_pred HHHHHHHHHHHhccccchHHH
Confidence 555555555555444544443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=267.15 Aligned_cols=392 Identities=20% Similarity=0.177 Sum_probs=281.6
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+.+|.+.....+..+++++|..+|++++|+++||+|||++++.++++..++.++.++++|++.+++.|++.|++.++..
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCChhhHHhc
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQ 182 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~~~~ 182 (459)
.....+++|++++++|+.+..+ ......+..++++.++.... +||+.+++..++.++.++.+++.||+|||+..+
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~----~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~ 264 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR----DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSK 264 (521)
T ss_pred HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHc
Confidence 9999999999999999999999 55555555555555333332 699999999999998877777778999999999
Q ss_pred CCHHHHHHHHHHHcCCC---cchHHHHHHH-HHH-HH--HhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHH
Q 012627 183 GKLDEARKVLEKVRGTA---NVDAEFSDLI-DAS-NA--ARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILF 255 (459)
Q Consensus 183 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (459)
++.+++.+.+++..+.+ ....+..+.. ... .. ..+.+..+.++++.+..++..+... +..+.....++
T Consensus 265 g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~-~~~~~~~~~y~---- 339 (521)
T KOG0255|consen 265 GRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLL-FIWFVFSLVYY---- 339 (521)
T ss_pred CchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHH-HHHHHHhHHHH----
Confidence 99999999998886543 1111111111 111 11 1112244667776664444333332 12211111111
Q ss_pred hHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhH
Q 012627 256 YAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIG 335 (459)
Q Consensus 256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (459)
-++.....+|. .........+..........+...|+.|||.....+.....++.+...+.... ...
T Consensus 340 gl~~~~~~lg~---~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 406 (521)
T KOG0255|consen 340 GLSLNVSGLGG---NIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDD----------LGG 406 (521)
T ss_pred hhhhhhhhcCc---hHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcc----------chh
Confidence 11222222332 33455555666777888888899999999999988888888887777766411 111
Q ss_pred HHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 012627 336 IFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMS 415 (459)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (459)
+...+...+..++.+.++... +.+..|++|+..|..+.+..+....++.+++|.+...............+.....+.+
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~ 485 (521)
T KOG0255|consen 407 WLHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLG 485 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Confidence 233444444444445555445 6777899999999999999999999999999888765544222112222455666666
Q ss_pred HHHHHhcCCCCCCCHHHHHHHhc
Q 012627 416 AFIYFFLPETKQVPIEEIYLLFE 438 (459)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~ 438 (459)
.+...++||++++.+.+..++.+
T Consensus 486 ~~~~~~lpet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 486 LLSLLLLPETKGKPLPGTLLDAE 508 (521)
T ss_pred HHHHhcCcccCCCCCchhHHHHH
Confidence 66668999999998866555544
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=261.84 Aligned_cols=344 Identities=16% Similarity=0.127 Sum_probs=246.6
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+++|+|..+.+++.+++.+++.++++++|+++||+|||+++..+.++.+++.+++++++|++.++++|++.|++.+..+
T Consensus 30 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 109 (377)
T TIGR00890 30 GRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAY 109 (377)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 55678888999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHh-cccCCChhhHHh
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLVE 181 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~l~e~p~~~~~ 181 (459)
+.....+.|++| ++|+++.++...+.++|..+++++.... .+..+||+.|++.+++.++..+.. ++++|+|+.. .
T Consensus 110 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~ 185 (377)
T TIGR00890 110 GIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSV--INLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQL-I 185 (377)
T ss_pred HhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHH--HhcccHHHHHHHHHHHHHHHHHHHHHheecCchhc-c
Confidence 888889999997 5699999999999999988766553222 234589999999998887775554 4455544210 0
Q ss_pred cCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHH
Q 012627 182 QGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF 261 (459)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (459)
+++ ++ .+ +.+.+.++.++++..+... ...+...........+.+.+.
T Consensus 186 ~~~-~~-------------~~--------------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 232 (377)
T TIGR00890 186 KTN-IE-------------VS--------------VKDYTVWEMLRTPQFWVLY-----LSFFLNAVSGLLLIGLYKPYG 232 (377)
T ss_pred ccC-cc-------------cc--------------hhhhhHHHHHcCccHHHHH-----HHHHHHhHHHHHHHHHHHHHH
Confidence 000 00 00 0011123344443322221 112222222233444556667
Q ss_pred HHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 012627 262 QSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIV 341 (459)
Q Consensus 262 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (459)
++++.+..+.+.......++.++++++.+++.||++||+.+..+.....++.+...... ....+.....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 301 (377)
T TIGR00890 233 QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP-----------MLNDVLFLAT 301 (377)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc-----------cchhHHHHHH
Confidence 77888888888888999999999999999999999999987766665555554433221 1111222222
Q ss_pred HHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 012627 342 ICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMS 415 (459)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (459)
..+.+.+.+... +....+..|.+|+++|+++.|+.+....++..+++.+.+.+.+..++...+...+++.+++
T Consensus 302 ~~~~g~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 302 VALVFFTWGGTI-SLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHHHhccch-hccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 333334433333 2334456799999999999999999999999999999999998888776666655555443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=264.32 Aligned_cols=371 Identities=16% Similarity=0.163 Sum_probs=256.8
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+++|.|..+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++++++|++.++++|++.|++.+...
T Consensus 21 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 100 (399)
T TIGR00893 21 QEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFF 100 (399)
T ss_pred HHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhh
Confidence 55678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHh-cccCCChhhHHh
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLVE 181 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~l~e~p~~~~~ 181 (459)
+....++.|++|+++|++++++.....++|.++++.++.... +..+||+.|++.+++.++..+.. +..||+|+....
T Consensus 101 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (399)
T TIGR00893 101 PGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL--IHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKW 178 (399)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHH--HhCCchHHHHHHHHHHHHHHHHhhheecCCCCcccc
Confidence 999999999999999999999999999999999999954433 34579999999888877765554 446776532111
Q ss_pred cCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHH
Q 012627 182 QGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF 261 (459)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (459)
. +.++.....++... +. +..++++..+.+.++.++++.. .... +..+...........+.|.++
T Consensus 179 ~-~~~~~~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~ 242 (399)
T TIGR00893 179 L-TEEEKYIVVGGLLA--EQ--------QGKGPSTPKKYQIKELLKDRRV----WGLA-LGQFLVNIGLGFFLTWFPTYL 242 (399)
T ss_pred C-CHHHHhhcchhhcc--cc--------ccccccCCCccchHHHhcCHHH----HHHH-HHHHHHHhHHHHHHHHHHHHH
Confidence 0 11110000000000 00 0000111112234444444332 1122 344445556667777888888
Q ss_pred HH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhh-HHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 012627 262 QS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAG-TEMIIYMVIVAITLALEFGEGKPLPKGIGIFLV 339 (459)
Q Consensus 262 ~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (459)
++ .|.++.+.+.......++.+++.++.+++.||++||+...... ....++.+......... . .....+...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~ 316 (399)
T TIGR00893 243 VQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFAT-N-----YVNIPYAAL 316 (399)
T ss_pred HHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh-c-----cchhHHHHH
Confidence 65 7888889999999999999999999999999999986322211 11111111111111100 0 001122222
Q ss_pred HHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHH
Q 012627 340 IVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK-FGIFLVFGGLVVIMSAFI 418 (459)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 418 (459)
....+...+ .+..+....+..|.+|++.|+++.|+.+....++..+++.+.+.+.+..+ +...+...+++.+.+.+.
T Consensus 317 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 394 (399)
T TIGR00893 317 ALVALGFFG--LGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALS 394 (399)
T ss_pred HHHHHHHhc--hhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHH
Confidence 222222222 22445667777899999999999999999999999999999999999877 666665555555544444
Q ss_pred H
Q 012627 419 Y 419 (459)
Q Consensus 419 ~ 419 (459)
.
T Consensus 395 ~ 395 (399)
T TIGR00893 395 Y 395 (399)
T ss_pred H
Confidence 3
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-32 Score=254.11 Aligned_cols=343 Identities=16% Similarity=0.177 Sum_probs=240.8
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHh
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA--------VHISMLLLGRIFL 94 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~r~l~ 94 (459)
.+++|.|+.+.|++.+++.+++.+++++.|+++||+|||+++..+.++++++.+.+.++ .+++.+++.|+++
T Consensus 43 ~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 122 (399)
T PRK05122 43 HDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLL 122 (399)
T ss_pred HHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999998887766553 2577899999999
Q ss_pred hhhhhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCC
Q 012627 95 GMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPE 174 (459)
Q Consensus 95 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e 174 (459)
|++.+...+...+++.|++|+++|++++++...+..+|.++|+.++... .+..|||+.+++.++..++..+.....|+
T Consensus 123 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 200 (399)
T PRK05122 123 GIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLL--YHWGGLAGLGLLIMLLALLGLLLARPRPA 200 (399)
T ss_pred HhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHH--HHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999995443 34568999988877665544443333343
Q ss_pred ChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHH
Q 012627 175 TPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSIL 254 (459)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (459)
+++ .+++ +.++++.+++. +..... .......+....
T Consensus 201 ~~~---~~~~----------------------------------~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~ 236 (399)
T PRK05122 201 VPP---VKGE----------------------------------RLPFRRVLGRV--WPYGMG-----LALASIGFGTIA 236 (399)
T ss_pred CCC---CCcc----------------------------------chhHHHHHHHH--HHHHHH-----HHHHHHHHHHHH
Confidence 221 0000 00011111110 000111 111122234455
Q ss_pred HhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchh
Q 012627 255 FYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGI 334 (459)
Q Consensus 255 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (459)
.+.+.++++.|+ .+.+.......++.+++.++.+++.||+++|+.+..+.....++..+.... +.
T Consensus 237 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------~~ 301 (399)
T PRK05122 237 TFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA-------------PS 301 (399)
T ss_pred HHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-------------cc
Confidence 667777776666 345666677788889999999999999999987766655555544433321 11
Q ss_pred HHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 012627 335 GIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIM 414 (459)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (459)
.+..+....+.+.+.+..++.. .....|..|++.|+++.|+.+....++..+++.+.+.+.+..++...+...+++.++
T Consensus 302 ~~~~~~~~~l~G~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 380 (399)
T PRK05122 302 PWMALIGAALTGFGFSLVFPAL-GVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALL 380 (399)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 2233334444555554444332 233458889999999999999999999999999999999988877766666666666
Q ss_pred HHHHHHhcCCCCC
Q 012627 415 SAFIYFFLPETKQ 427 (459)
Q Consensus 415 ~~~~~~~~~~~~~ 427 (459)
+.+.....+++++
T Consensus 381 ~~~~~~~~~~~~~ 393 (399)
T PRK05122 381 GLALTWLLYRRAP 393 (399)
T ss_pred HHHHHHHhccccc
Confidence 6666555555443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-32 Score=252.02 Aligned_cols=333 Identities=16% Similarity=0.139 Sum_probs=237.3
Q ss_pred cccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhh
Q 012627 22 ETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFG 101 (459)
Q Consensus 22 ~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 101 (459)
..+++|.++.+.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|+++|++.+..
T Consensus 46 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 125 (394)
T PRK10213 46 MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGF 125 (394)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHh-cccCCChhhHH
Q 012627 102 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLV 180 (459)
Q Consensus 102 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~l~e~p~~~~ 180 (459)
.+...+++.|++|+++|++++++...+.++|.+++|+++... .+.+|||+.|++.++++++..+.. ..+||+|+.
T Consensus 126 ~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l--~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~-- 201 (394)
T PRK10213 126 WAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFL--GELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE-- 201 (394)
T ss_pred HHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc--
Confidence 999999999999999999999999999999999999996544 345689999999887776654433 346765420
Q ss_pred hcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHh-HHH
Q 012627 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFY-APV 259 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 259 (459)
+++ ...+.++.++++..+... +..+...........+ .|.
T Consensus 202 -~~~---------------------------------~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~ 242 (394)
T PRK10213 202 -PSH---------------------------------QKQNTFRLLQRPGVMAGM-----IAIFMSFAGQFAFFTYIRPV 242 (394)
T ss_pred -ccc---------------------------------chhHHHHHhcCHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 000 000122333333222211 1122222233334444 477
Q ss_pred HHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 012627 260 IFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLV 339 (459)
Q Consensus 260 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (459)
+.+++|+++.+.+......+++.+++.++.+++.||.+ |+.+.....+.......+.... ...+...
T Consensus 243 ~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~------------~~~~~~~ 309 (394)
T PRK10213 243 YMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWG------------SDKIVAT 309 (394)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh------------hhHHHHH
Confidence 77778999999999999999999999999999999954 4333332222222211211111 1123344
Q ss_pred HHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 012627 340 IVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVV 412 (459)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (459)
....+.+++++...... ...+.+..| +.++...+......+++..+++.+.|.+.|..+....+...++..
T Consensus 310 ~~~~l~G~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~ 380 (394)
T PRK10213 310 GVAIIWGLTFALVPVGW-STWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLM 380 (394)
T ss_pred HHHHHHHHHHHhhhHHH-HHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHH
Confidence 44555555554443333 334456666 445677777778888999999999999999887666555544433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=261.31 Aligned_cols=369 Identities=13% Similarity=0.085 Sum_probs=250.1
Q ss_pred ccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhh--hhHHHHHHHHHHhhhhhhhhc
Q 012627 25 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA--VHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 25 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~ 102 (459)
+++++..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~ 149 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS 149 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence 789999999999999999999999999999999999999999999999999887654 568899999999999999999
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccC-chhhHHHHhhHHHHHHHHHHhcc-cCCChhhHH
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHP-WGWRLSLGLATVPATLMFVGGLF-LPETPNSLV 180 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~-~gwr~~f~~~~~~~~~~~~~~~~-l~e~p~~~~ 180 (459)
+....++.||+|+++|++++++...+..+|.+++++++... .+. .+||+.|++.++++++..+++++ .+|+|+...
T Consensus 150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l--~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~ 227 (465)
T TIGR00894 150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWL--CESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP 227 (465)
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC
Confidence 99999999999999999999999999999999999995443 334 38999999999988777665544 667774211
Q ss_pred hcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHH
Q 012627 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVI 260 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (459)
.. +.+| ++..++. .++++.+++.+.+++++++++..+.. . +..+......+.+..|+|.+
T Consensus 228 ~~-~~~~-~~~i~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~lp~~ 287 (465)
T TIGR00894 228 CI-SKFE-KKYINSS-------------LQGQKGSTRQSLPIKAIPKSLPVWAI----W-FAIFGHFWLYTILPTYLPTF 287 (465)
T ss_pred CC-CHHH-HHHHHhh-------------cccccCCCCCCCCHHHHhcCHHHHHH----H-HHHHHHHHHHHHHHHHHHHH
Confidence 11 1111 1111000 00000001112345666655432222 2 44555566667788899999
Q ss_pred HHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehh---hHHHHHHHHHHHHHH-HHHhcCCCCCCchhH
Q 012627 261 FQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEA---GTEMIIYMVIVAITL-ALEFGEGKPLPKGIG 335 (459)
Q Consensus 261 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 335 (459)
+++ +|++..+.++......++.+++.+++|+++||+++|+..... .....++..+..... ...... ...
T Consensus 288 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 361 (465)
T TIGR00894 288 ISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLS------AAF 361 (465)
T ss_pred HHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcC------Cch
Confidence 865 899999999999999999999999999999998765433211 111111111111111 011000 111
Q ss_pred HHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHH
Q 012627 336 IFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL---KFGIFLVFGGLVV 412 (459)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 412 (459)
+..++...+.+.+.+... +.......|..|+ .+|.+.|+.+..+.+++.++|.+.+.+.+.. .+...+.+.++..
T Consensus 362 ~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~ 439 (465)
T TIGR00894 362 YLTIIILTLANAVSSGPL-AGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVN 439 (465)
T ss_pred HHHHHHHHHHHHHhhhhh-hhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHH
Confidence 222222333333322222 2223344566665 7899999999999999999999999887643 2444555555555
Q ss_pred HHHHHHHHhcC
Q 012627 413 IMSAFIYFFLP 423 (459)
Q Consensus 413 ~~~~~~~~~~~ 423 (459)
+++.+......
T Consensus 440 ~i~~i~~~~~~ 450 (465)
T TIGR00894 440 ILCVIFYLIFG 450 (465)
T ss_pred HHHHHHeeeee
Confidence 55555444443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-32 Score=251.28 Aligned_cols=337 Identities=12% Similarity=0.083 Sum_probs=234.2
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+++|.+..+.+++.+.+.+++.++++++|+++||+|||+++..+.++.+++.+++++++|++.+++.|++.|++.+...
T Consensus 30 ~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~ 109 (382)
T PRK10091 30 AHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFF 109 (382)
T ss_pred HHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHH
Confidence 55678889999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hcccCCChhhHHh
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVE 181 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p~~~~~ 181 (459)
+....++.|++|+++|++++++...+..+|..++++++... .+..+||+.|++.++..++..+. .+++||.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l--~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~---- 183 (382)
T PRK10091 110 GVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYL--SQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD---- 183 (382)
T ss_pred HHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHH--hhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc----
Confidence 88889999999999999999999999999999999985443 34468999999998877766544 445777542
Q ss_pred cCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHH
Q 012627 182 QGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF 261 (459)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (459)
+.+.+. + +.+ +.++++..+ ... ...............+.+.++
T Consensus 184 ~~~~~~------------------~-------------~~~-~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~ 226 (382)
T PRK10091 184 EAKGGL------------------R-------------EQF-HFLRSPAPW---LIF--AATMFGNAGVFAWFSYIKPYM 226 (382)
T ss_pred ccccCH------------------H-------------HHH-HHhcChHHH---HHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0 000 111222111 111 111122222223334445555
Q ss_pred H-HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 012627 262 Q-SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVI 340 (459)
Q Consensus 262 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (459)
+ .+|+++.+.+.......++.+++.++.+++.||+++|+....+..+..++.+++.... +..+....
T Consensus 227 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~------------~~~~~~~~ 294 (382)
T PRK10091 227 MFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG------------GMKTASLI 294 (382)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH------------hhHHHHHH
Confidence 4 4899999999999999999999999999999999999887766665555554433221 11122222
Q ss_pred HHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHH
Q 012627 341 VICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCH-LKFGIFLVFGGLVVIMSA 416 (459)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 416 (459)
.....+.+......+.......+..|.+.++.+ ..+....+|..++|.+.|.+.|. .++...+...++..++.+
T Consensus 295 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~ 369 (382)
T PRK10091 295 FAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAM 369 (382)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHH
Confidence 222233332222222322333444455544443 34667889999999999999986 456555554444443333
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=258.85 Aligned_cols=360 Identities=14% Similarity=0.060 Sum_probs=255.4
Q ss_pred ccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHhhhhhh
Q 012627 25 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC-----AVHISMLLLGRIFLGMGIG 99 (459)
Q Consensus 25 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g 99 (459)
+++.++.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+..+. .++++.+++.|++.|++.+
T Consensus 46 ~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 125 (417)
T PRK10489 46 MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGS 125 (417)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 34567888999999999999999999999999999999999988888877765542 5688999999999999999
Q ss_pred hhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCChhhH
Q 012627 100 FGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSL 179 (459)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~ 179 (459)
...+...+++.|++|+++|+++.++.....++|..+||.++.... +..+|++.|++.++..++..++.+.+||+++..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 203 (417)
T PRK10489 126 LGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI--AAGGVAWNYGLAAAGTFITLLPLLRLPALPPPP 203 (417)
T ss_pred HHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 888999999999999999999999999999999999999965443 334799999988887777666666677764311
Q ss_pred HhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHH
Q 012627 180 VEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPV 259 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (459)
++.++ +. ++.+++++..++++..+...+.. +... .......+.|.
T Consensus 204 ---~~~~~----------------~~----------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~p~ 248 (417)
T PRK10489 204 ---QPREH----------------PL----------RSLLAGFRFLLASPVVGGIALLG-----GLLT-MASAVRVLYPA 248 (417)
T ss_pred ---ccccc----------------ch----------HHHHHHHHHHHcChHHHHHHHHH-----HHHH-HHHhHHHhhHH
Confidence 00000 00 00011223333333322222111 1111 12345667888
Q ss_pred HHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHH
Q 012627 260 IFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFL 338 (459)
Q Consensus 260 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (459)
+.++ +|.++.+.++......++.+++.++.+++.||.++++.+..+..+..++.+++... +..+..
T Consensus 249 ~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~ 315 (417)
T PRK10489 249 LADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM-------------PMWILA 315 (417)
T ss_pred HHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-------------chHHHH
Confidence 8887 89999999999999999999999999999998776666655554444444333211 112222
Q ss_pred HHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHH
Q 012627 339 VIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGI-FLVFGGLVVIMSAF 417 (459)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 417 (459)
.+...+.+.+.+.. .+....+..|..|++.|+++.|+.+....++..+++.+.|.+.+..+... +...+++..+++.+
T Consensus 316 ~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~ 394 (417)
T PRK10489 316 VLCLALFGYLSAIS-SLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVL 394 (417)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence 33333333333322 23345566799999999999999999999999999999999999877544 44455555666666
Q ss_pred HHHhcCCCCCCCHHHHHH
Q 012627 418 IYFFLPETKQVPIEEIYL 435 (459)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~ 435 (459)
.....++.++++++|+++
T Consensus 395 ~~~~~~~~~~~~~~~~~~ 412 (417)
T PRK10489 395 LLLVLGELRRFRQTPPEV 412 (417)
T ss_pred HHHhcccccccccccccC
Confidence 677778777766655443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=255.46 Aligned_cols=358 Identities=13% Similarity=0.023 Sum_probs=226.8
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+++|++..+.+++.+.+.+++.++++++|+++||+|||+++..+.++++++.++++++++++.++++|++.|++.+..
T Consensus 63 ~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~- 141 (476)
T PLN00028 63 RDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATF- 141 (476)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh-
Confidence 5567888889999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccc-------cccCchhhHHHHhhHHHHHHHHHHhcccC-C
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTE-------KIHPWGWRLSLGLATVPATLMFVGGLFLP-E 174 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~-------~~~~~gwr~~f~~~~~~~~~~~~~~~~l~-e 174 (459)
+....++.|++|+++|++++++.....++|..+++.+..... .....|||+.|++.++++++..+..++++ +
T Consensus 142 ~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~ 221 (476)
T PLN00028 142 VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQD 221 (476)
T ss_pred HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 445668999999999999999998777777777665532211 11124899999999988877765554444 4
Q ss_pred ChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHH
Q 012627 175 TPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSIL 254 (459)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (459)
.|+. +.++.++ + .+ .+++.....+++.++++..+... +..+..........
T Consensus 222 ~p~~-----~~~~~~~---~----~~------------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 272 (476)
T PLN00028 222 LPDG-----NYRELKK---S----GT------------MPKDSFSKVLRYGVTNYRTWILA-----LTYGYSFGVELTMD 272 (476)
T ss_pred CCCC-----chhhHHh---c----Cc------------cccccHHHHHHHHHcCchhHHHH-----HHHHHHHHHHHHHH
Confidence 4421 1011000 0 00 00000001123333333322111 22222333334456
Q ss_pred HhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceee----hhhHHHHHHHHHHHHHHHHHhcCCCC
Q 012627 255 FYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFL----EAGTEMIIYMVIVAITLALEFGEGKP 329 (459)
Q Consensus 255 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (459)
.+.|.++.+ +|++..+++.......++.++++++.|+++||++||+... .......+..+..... ..
T Consensus 273 ~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~---~~----- 344 (476)
T PLN00028 273 NIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWL---GR----- 344 (476)
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHh---cc-----
Confidence 677888754 7999999999999999999999999999999998763211 1111111111111111 00
Q ss_pred CCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 012627 330 LPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGG 409 (459)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (459)
. ...+..+....++..+.....+ ..+.+..+..| +.++++.|+.+..+.+++.+++.+.+. .+..++...+.+.+
T Consensus 345 -~-~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~~-~~~~~y~~~f~~~~ 419 (476)
T PLN00028 345 -A-NSLGAAIVVMILFSIFVQAACG-ATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFFT-GSSYSTETGISLMG 419 (476)
T ss_pred -c-chHHHHHHHHHHHHHHHHHhhh-hhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHHh-cCCccHhhHHHHHH
Confidence 0 1112222222233333222222 22444456544 678999999988888888887776541 12233555555555
Q ss_pred HHHHHHHHHHHhcC
Q 012627 410 LVVIMSAFIYFFLP 423 (459)
Q Consensus 410 ~~~~~~~~~~~~~~ 423 (459)
++.+++.++.++.+
T Consensus 420 ~~~~i~~~~~~~~~ 433 (476)
T PLN00028 420 VMIIACTLPVAFIH 433 (476)
T ss_pred HHHHHHHHHHHhee
Confidence 55555666555554
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=247.07 Aligned_cols=396 Identities=22% Similarity=0.275 Sum_probs=282.6
Q ss_pred cccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHhhhhh
Q 012627 26 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV-------HISMLLLGRIFLGMGI 98 (459)
Q Consensus 26 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~ 98 (459)
-+.++...+.+..+..+|..+|+++.|+++||+|||+++...++++.+++++++++. -.+++...|+++|+|.
T Consensus 79 g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGI 158 (538)
T KOG0252|consen 79 GHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGI 158 (538)
T ss_pred CcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccc
Confidence 346677779999999999999999999999999999999999999999999888762 2578999999999999
Q ss_pred hhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhcccc-----cc--------CchhhHHHHhhHHHHHHH
Q 012627 99 GFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEK-----IH--------PWGWRLSLGLATVPATLM 165 (459)
Q Consensus 99 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~-----~~--------~~gwr~~f~~~~~~~~~~ 165 (459)
|+-+|...+..+|....++||...+.+.+..+.|.+.|.+++..... .+ ..-||..+-+.++++++.
T Consensus 159 GGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ 238 (538)
T KOG0252|consen 159 GGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLV 238 (538)
T ss_pred cCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888888888888776433211 11 124999999999999998
Q ss_pred HHHhcccCCChhhHHhcC-CHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCc---hhHHhhhcCCCchHHHHHHH
Q 012627 166 FVGGLFLPETPNSLVEQG-KLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNP---FRNLFKKKNRPQLVIGALGI 241 (459)
Q Consensus 166 ~~~~~~l~e~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 241 (459)
+..++.+|||++|-.... +.+++.+ +..+....+.+.++ +.....+..+.+ +...+..+. -+.++.. +.
T Consensus 239 ly~Rl~M~Et~~Y~al~~~~~~~a~~---d~~k~~~~~~~~~~--~~~~~~~~~~~~~~~F~~~f~~~h-g~~Llgt-~~ 311 (538)
T KOG0252|consen 239 LYFRLKMPETARYTALVSKKLKQAAG---DMKKVLSVDIEAES--TAESDVPPPSNSFGLFSRLFLRWH-GKHLLGT-AG 311 (538)
T ss_pred HHhhhcCCcchhHHHHhhcCHhhhhh---ccccccccccchhh--ccccCCCCcccccchHHHHHHHHH-HHHHHHH-HH
Confidence 888888999998864332 2233321 11111111111111 111111111122 223332221 1222222 36
Q ss_pred hHHHhhcchhHHHHhHHHHHHHcCCCCCchhH--------H-HHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHH
Q 012627 242 PAFQQLTGMNSILFYAPVIFQSLGFGSGAALY--------S-SVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIY 312 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~-~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 312 (459)
.++..-..++....+...+++..|+.+.+... . ..+...+.++|..+...++|++|||+..+.++.++.+.
T Consensus 312 ~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~ 391 (538)
T KOG0252|consen 312 TWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIF 391 (538)
T ss_pred HHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHH
Confidence 77777788888888899999988876654433 1 11222233335566667899999999999888888777
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHH
Q 012627 313 MVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAF 392 (459)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~ 392 (459)
.+.++..... .. .....++...+..+....+.+.....+++|.+|++.|++..|+....+..|++++...+
T Consensus 392 ~~~~~~~y~~-------~~--~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F 462 (538)
T KOG0252|consen 392 FFVIAGPYNQ-------LE--NTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGF 462 (538)
T ss_pred HHHHcCCccc-------cc--ccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHh
Confidence 7766654321 01 11223344444555555666667788899999999999999999999999999999999
Q ss_pred HHHHh-----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHh
Q 012627 393 LAALC-----HLKFGIFLVFGGLVVIMSAFIYFFLPETKQVPIEEIYLLF 437 (459)
Q Consensus 393 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (459)
.++.+ ..+....++..+.+...+.+.-+++||+++++.+|++.+.
T Consensus 463 ~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 463 LYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKSLEEISNEE 512 (538)
T ss_pred hHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccccCHHHhcChh
Confidence 99988 5566666777777777778878888999999998874443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=257.60 Aligned_cols=358 Identities=13% Similarity=0.003 Sum_probs=250.4
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+++|.+.++.+|+.+.+.+++.++.+++|+++||+|||+++..+.+++.++++++++++|++.++++|+++|++.+...
T Consensus 33 ~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~ 112 (495)
T PRK14995 33 SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIV 112 (495)
T ss_pred HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhcC-CCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hcccCCChhhHH
Q 012627 103 QAVPLYLSEMA-PAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLV 180 (459)
Q Consensus 103 ~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p~~~~ 180 (459)
+.....+.+++ |+++|+++++++....++|..+||.++... .+..||||.|++....+++.+++ .+++||+|+...
T Consensus 113 ~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l--~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~ 190 (495)
T PRK14995 113 PATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGIL--LEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRD 190 (495)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 88888887776 678999999999999999999999995444 44568999999988877766544 455787653211
Q ss_pred hcCCHHHHHH----------HHHHHcCCCcchHHHHH--------HHHHHHHHhhhcCch--hHHhhhcCCCchHHHHHH
Q 012627 181 EQGKLDEARK----------VLEKVRGTANVDAEFSD--------LIDASNAARAIKNPF--RNLFKKKNRPQLVIGALG 240 (459)
Q Consensus 181 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 240 (459)
++.+...... ..+.............. .......+...+.+. .++++++......
T Consensus 191 ~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~----- 265 (495)
T PRK14995 191 QPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGV----- 265 (495)
T ss_pred CCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHH-----
Confidence 1111111000 00000000000000000 000000111112222 2345544332222
Q ss_pred HhHHHhhcchhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHH
Q 012627 241 IPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAIT 319 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 319 (459)
+..+......+....+.|.+++. +|+++.+++....+..++..++.++.|++.||+|+|+.+..+..+..++..++...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~ 345 (495)
T PRK14995 266 VMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMT 345 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHh
Confidence 22333344455666788888876 89999999999999999999999999999999999887665555554444433321
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012627 320 LALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCH 398 (459)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 398 (459)
. .....+.......+.+.+.+....+. .....+..|++.++.+.++.+....+|+.+++.+.+.+.++
T Consensus 346 ~----------~~~~~~~~~~~~~l~G~g~g~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 346 D----------FSTQQWQAWGLMALLGFSAASALLAS-TSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred c----------CCCchHHHHHHHHHHHHhHHHHHHHH-HHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 01112223344455566655555444 33445788999999999999999999999999999998764
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-31 Score=248.33 Aligned_cols=341 Identities=22% Similarity=0.296 Sum_probs=234.3
Q ss_pred cCchhHHHHHHH-----hHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHh
Q 012627 28 YDNQVLTLFTSS-----LYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHIS--------MLLLGRIFL 94 (459)
Q Consensus 28 ~s~~~~~~~~s~-----~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~ 94 (459)
.++.+.+.+.+. .+++..+++++.|+++||+|||+++..+.++..++.++++++++++ .+++.|+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 106 (394)
T TIGR00883 27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ 106 (394)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence 444555554443 3334457899999999999999999999999999999999998875 488999999
Q ss_pred hhhhhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhcccc------ccCchhhHHHHhhHHHHHHHHHH
Q 012627 95 GMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEK------IHPWGWRLSLGLATVPATLMFVG 168 (459)
Q Consensus 95 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~------~~~~gwr~~f~~~~~~~~~~~~~ 168 (459)
|++.+...+....++.|++|+++|++..++...+..+|.++++.++..... ....+||+.|++.++..++....
T Consensus 107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 186 (394)
T TIGR00883 107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL 186 (394)
T ss_pred HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987543321 13468999999888777666555
Q ss_pred hcccCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhc
Q 012627 169 GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 248 (459)
Q Consensus 169 ~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (459)
...+||+|++..+++ ++++.+.+.++.++++..+ . .... ...+....
T Consensus 187 ~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~ 233 (394)
T TIGR00883 187 RRNLEETPVFEKAQE------------------------------KHKKKRGPIRETLTKHRKP-F-LLGL-GLVIATTT 233 (394)
T ss_pred HHhcCCChhHHHHHh------------------------------ccccccCCHHHHHHhchHH-H-HHHH-HHHHHHHH
Confidence 556777664211100 0011123344555443311 1 1111 23333444
Q ss_pred chhHHHHhHHHHHH-HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCC
Q 012627 249 GMNSILFYAPVIFQ-SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEG 327 (459)
Q Consensus 249 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (459)
..+....+.|.+++ ++|.++.+.+.......+...++.++.+++.||++||+.+.....+..+......... .
T Consensus 234 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~---- 307 (394)
T TIGR00883 234 TFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMAL--L---- 307 (394)
T ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH--h----
Confidence 55566778888884 5889988899988999999999999999999999999876544333322221111111 0
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHH-HHHHHHHHHHHHHHHHHHhhhh-HHHHH
Q 012627 328 KPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVV-CNNLLFTALIAQAFLAALCHLK-FGIFL 405 (459)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 405 (459)
.....+.......+.+.+.+...++ ...+..|.+|++.|+++.++.+ ....++..++|.+.+.+.++.+ +...+
T Consensus 308 ---~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~ 383 (394)
T TIGR00883 308 ---DSGSFTLFFFLVLGLALIGGMYTGP-MGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIG 383 (394)
T ss_pred ---cCCchHHHHHHHHHHHHHHHHHhhh-HHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHH
Confidence 0011233333334444444444433 3566689999999999999854 4456788899999999998877 55444
Q ss_pred HHHHHH
Q 012627 406 VFGGLV 411 (459)
Q Consensus 406 ~~~~~~ 411 (459)
....++
T Consensus 384 ~~~~~~ 389 (394)
T TIGR00883 384 YYLAAL 389 (394)
T ss_pred HHHHHH
Confidence 444433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-31 Score=247.14 Aligned_cols=337 Identities=12% Similarity=0.122 Sum_probs=234.7
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHh--------hhhHHHHHHHHHHh
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC--------AVHISMLLLGRIFL 94 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~r~l~ 94 (459)
.+++|.|..++|++.+++.+++.++++++|+++||+||||++..+.+...++.+.... .++++.+++.|+++
T Consensus 43 ~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 122 (392)
T PRK12382 43 HHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLIL 122 (392)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999999999998887776543321 36889999999999
Q ss_pred hhhhhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCC
Q 012627 95 GMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPE 174 (459)
Q Consensus 95 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e 174 (459)
|++.+...+...+++.|++|+++|++++++.+.+.+.|.++||+++.... +..|||+.+.+..+..++........||
T Consensus 123 G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 200 (392)
T PRK12382 123 GFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH--SHFGFAALALTTMVLPLLAWAFNGTVRK 200 (392)
T ss_pred HHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH--hccChHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999954433 3458998877665554433332222343
Q ss_pred ChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHH
Q 012627 175 TPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSIL 254 (459)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (459)
.++. +++ +.+.++..+...... .. ............
T Consensus 201 ~~~~---~~~----------------------------------~~~~~~~~~~~~~~~--~~-----~~l~~~~~~~~~ 236 (392)
T PRK12382 201 VPAH---AGE----------------------------------RPSLWSVVGLIWKPG--LG-----LALQGVGFAVIG 236 (392)
T ss_pred CCCC---ccc----------------------------------CchHHHHHHHHHHhH--HH-----HHHHHHHHhHHH
Confidence 3210 000 000111111000000 11 111122333455
Q ss_pred HhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchh
Q 012627 255 FYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGI 334 (459)
Q Consensus 255 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (459)
.+.|.++++.+++ +.+.......++.+++.++.+++.||+++|+.+..+..+..++.++.... +.
T Consensus 237 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-------------~~ 301 (392)
T PRK12382 237 TFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA-------------PT 301 (392)
T ss_pred HHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc-------------cc
Confidence 6677777776664 34566666778888999999999999999998877666555555443321 11
Q ss_pred HHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 012627 335 GIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIM 414 (459)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (459)
.+.......+.+.+.+...+.. .....|.+|++.|+++.|+.+....++..+++.+.+.+.++.++...+.+.+.+.++
T Consensus 302 ~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~ 380 (392)
T PRK12382 302 AWVALAGAALTGAGCSLIFPAL-GVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVL 380 (392)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH-HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 2223333344444444333322 334468889999999999999999999999999999999988877776666666666
Q ss_pred HHHHHHh
Q 012627 415 SAFIYFF 421 (459)
Q Consensus 415 ~~~~~~~ 421 (459)
+.+....
T Consensus 381 ~~~~~~~ 387 (392)
T PRK12382 381 GIIVTIL 387 (392)
T ss_pred HHHHHHh
Confidence 5555443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-32 Score=250.93 Aligned_cols=370 Identities=15% Similarity=0.209 Sum_probs=262.9
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhh--hHHHHHHHHHHhhhhhhh
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV--HISMLLLGRIFLGMGIGF 100 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~ 100 (459)
+++++.|+.+.+++.+.++.|+.+++++.|+++||+|.|+++..+.++.++++++..++. +++.+++.|+++|++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 568999999999999999999999999999999999999999999999999999998874 556889999999999999
Q ss_pred hcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcc-cCCChhhH
Q 012627 101 GNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF-LPETPNSL 179 (459)
Q Consensus 101 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-l~e~p~~~ 179 (459)
.+|+...+.++|.|++||++..++..++..+|.+++.++++.+... ..||+.+|++.++.+++..+++++ ..|+|+.
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s-~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~- 222 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES-SLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK- 222 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc-CCCCchHHHHHHHHHHHHHHHHHHHhcCCccc-
Confidence 9999999999999999999999999999999999999886555443 479999999999999998777654 6788753
Q ss_pred HhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHH---HhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHh
Q 012627 180 VEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNA---ARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFY 256 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (459)
++...+. |.+..++...+ ++..+.|++++++++..+... +..+....+.+.+..|
T Consensus 223 --h~~is~~---------------El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~-----~~~f~~~~~~~~l~~y 280 (466)
T KOG2532|consen 223 --HPNISEK---------------ELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIW-----ISAFGGNWGFYLLLTY 280 (466)
T ss_pred --CCCCCHH---------------HHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 1111111 11111111111 111367899999887644333 6677778888899999
Q ss_pred HHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceee--hhhHHHHHHHHHHHHHHHHHhcCCCCCCch
Q 012627 257 APVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFL--EAGTEMIIYMVIVAITLALEFGEGKPLPKG 333 (459)
Q Consensus 257 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (459)
.|.|+++ +|++..+.|+..++..+...+..+++|.++||+.+|.+-. .--+...++....+......... +..
T Consensus 281 ~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~----~~~ 356 (466)
T KOG2532|consen 281 LPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT----SDE 356 (466)
T ss_pred hhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec----CCC
Confidence 9999987 9999999999999999999999999999999997741100 00011122222211111110000 111
Q ss_pred hHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHh-h--hhHHHHHHHHHH
Q 012627 334 IGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALC-H--LKFGIFLVFGGL 410 (459)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~ 410 (459)
..+..+++..+.....+...+.. +.-..+.. ++..+..+|+.+....+.++++|.+.+.+.. . ..|...+...++
T Consensus 357 ~~~~a~~~l~~~~~~~g~~~~Gf-~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~ 434 (466)
T KOG2532|consen 357 HRLLAVILLTIAIGLSGFNISGF-YKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAG 434 (466)
T ss_pred cchHHHHHHHHHHHHcccchhhh-Hhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHH
Confidence 11222222222222222121111 11222334 4567999999999999999999999999883 2 246666655555
Q ss_pred HHHHHHHHHHhc
Q 012627 411 VVIMSAFIYFFL 422 (459)
Q Consensus 411 ~~~~~~~~~~~~ 422 (459)
..+++.+.+.+.
T Consensus 435 i~~~~~i~f~~f 446 (466)
T KOG2532|consen 435 ILIVGNIIFLFF 446 (466)
T ss_pred HHHHhchheeEe
Confidence 555555554444
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=253.11 Aligned_cols=353 Identities=19% Similarity=0.222 Sum_probs=246.4
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+...
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 123 (398)
T TIGR00895 44 SAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLM 123 (398)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccch
Confidence 45578888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHH-HHHhcccCCChhhHHh
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLM-FVGGLFLPETPNSLVE 181 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~-~~~~~~l~e~p~~~~~ 181 (459)
+...+++.|++|+++|++++++...+..+|..+++.++... .+..+||+.|++.++..++. .+...++||++++...
T Consensus 124 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (398)
T TIGR00895 124 PNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL--IPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVS 201 (398)
T ss_pred hhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHH--hhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHh
Confidence 99999999999999999999999999999999999985433 34468999999987655554 4445668998876544
Q ss_pred cCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHH
Q 012627 182 QGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF 261 (459)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (459)
+ +.++..+..++.......+.+. +..+...+.+..+...+..++.+..+...... +..+...........+.|.+.
T Consensus 202 ~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 277 (398)
T TIGR00895 202 K-RPETVRRIVNAIAPQMQAEAQS-ALPEQKATQGTKRSVFKALFQGKTARITVLLW--LLYFMLLVGVYFLTNWLPKLM 277 (398)
T ss_pred c-CHHHHHHHHHHHHHhccccccc-cccccccccchhhHHHHHHhcchhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 4 3333333332221111110000 00000000001111122233333222222222 223344445566777888777
Q ss_pred HHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 012627 262 QSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIV 341 (459)
Q Consensus 262 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (459)
++.|+++.+.+.......++.+++.++.+++.||+++|+... ......+...++.... ...+.....
T Consensus 278 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~~~~~~~~ 344 (398)
T TIGR00895 278 VELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGAVFAVLVGSTL------------FSPTLLLLL 344 (398)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHHHHHHHHh------------hCHHHHHHH
Confidence 889999999999999999999999999999999999884332 2222222222221110 112223334
Q ss_pred HHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHH
Q 012627 342 ICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAA 395 (459)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (459)
.++.+.+.+... +....+..|.+|++.|+++.|+.+....++..++|.+.|.+
T Consensus 345 ~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 345 GAIAGFFVNGGQ-SGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHH-HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 444455544444 33456678999999999999999999999999999998864
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-31 Score=249.96 Aligned_cols=373 Identities=13% Similarity=0.072 Sum_probs=241.8
Q ss_pred cccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhh----hhHHHHHHHHHHhhhhhhhh
Q 012627 26 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA----VHISMLLLGRIFLGMGIGFG 101 (459)
Q Consensus 26 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~g~~ 101 (459)
.|+|+.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++++. ++++.+.+.|++.|++.+..
T Consensus 56 ~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~ 135 (438)
T TIGR00712 56 QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMG 135 (438)
T ss_pred cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcc
Confidence 47889999999999999999999999999999999999999999999999887764 56788899999999999999
Q ss_pred cchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHH-HhcccCCChhhHH
Q 012627 102 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFV-GGLFLPETPNSLV 180 (459)
Q Consensus 102 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~-~~~~l~e~p~~~~ 180 (459)
++.....+.|++|+++|++++++.+.+.++|..+++.+..... ....+||+.|++.++++++..+ ..+++||+|+...
T Consensus 136 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~ 214 (438)
T TIGR00712 136 WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGM-AWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCG 214 (438)
T ss_pred hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcC
Confidence 9999999999999999999999999999999999887743222 1234799999999888777644 4566788775321
Q ss_pred hcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCch-hHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHH
Q 012627 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPF-RNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPV 259 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (459)
.++ .++.++ +. ..+.. + +.+.+.+.++.. +..++++..+... +..++.....+....+.|.
T Consensus 215 ~~~-~~~~~~---~~--~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~ 276 (438)
T TIGR00712 215 LPP-IEEYRN---DY--PDDYN----E---KAEQELTAKEIFMQYVLPNKLLWYIA-----IANVFVYLLRYGVLDWSPT 276 (438)
T ss_pred CCC-chhccc---cc--ccccc----c---ccccccchHHHHHHHHccCchHHHHH-----HHHHHHHHHHHHHHHhHHH
Confidence 110 000000 00 00000 0 000000000001 1233333222221 2233334445667788999
Q ss_pred HHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHH
Q 012627 260 IFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFL 338 (459)
Q Consensus 260 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (459)
++++ .|+++.++++...+..+.++++.++.+++.||+++++....+............... . . +....+..
T Consensus 277 ~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~--~-----~~~~~~~~ 348 (438)
T TIGR00712 277 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYW-M--N-----PAGNPLVD 348 (438)
T ss_pred HHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHH-h--c-----CCCchHHH
Confidence 9976 799999999999999999999999999999999755433322222211111111111 0 0 00111211
Q ss_pred HHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHH-HHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHH
Q 012627 339 VIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFT-ALIAQAFLAALCHLKFGIFLVF-GGLVVIMSA 416 (459)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 416 (459)
.......+.... +..........|.+|++.|+++.|+.+..+++++ .++|.+.|.+.|+.++...+.. .++.++..+
T Consensus 349 ~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~ 427 (438)
T TIGR00712 349 MICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI 427 (438)
T ss_pred HHHHHHHHHHHc-cHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 111122222111 1111112234689999999999999998888875 6799999999998876655444 344444444
Q ss_pred HHHHhcCCCC
Q 012627 417 FIYFFLPETK 426 (459)
Q Consensus 417 ~~~~~~~~~~ 426 (459)
......+|.|
T Consensus 428 ~~~~~~~~~~ 437 (438)
T TIGR00712 428 LLIVVMIGEK 437 (438)
T ss_pred HHHHHHhhcc
Confidence 4455555544
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-31 Score=247.45 Aligned_cols=347 Identities=12% Similarity=0.067 Sum_probs=243.1
Q ss_pred cccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhh
Q 012627 22 ETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFG 101 (459)
Q Consensus 22 ~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 101 (459)
..+++|+|..+.+++.+.+.+++.++++++|++.||+|||+++..+.++.+++.++++++++++.+++.|+++|++.+..
T Consensus 33 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~ 112 (394)
T PRK03699 33 IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGIT 112 (394)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhh
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCChhhHHh
Q 012627 102 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVE 181 (459)
Q Consensus 102 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~~~ 181 (459)
.+...+++.|++|+++|+++++......++|..++|.+..... .+..+||+.|.+.+++.++..++.++ ++.|+. +
T Consensus 113 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~--~ 188 (394)
T PRK03699 113 MSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLL-ARSIEWYWVYACIGLVYVAIFILTLF-SEFPAL--G 188 (394)
T ss_pred ccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHh-cCCccc--c
Confidence 9999999999999999999999999999999999988743332 23358999999988877665544332 222210 0
Q ss_pred cCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHH
Q 012627 182 QGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF 261 (459)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (459)
+++.++ + +.. .+....+.. .... +..++.....+.+..|.|.++
T Consensus 189 ~~~~~~--------------------------~----~~~----~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~p~~l 232 (394)
T PRK03699 189 KHAPKA--------------------------D----KPV----AKEKWGIGV-LFLA-IAALLYILAQLTFISWVPEYA 232 (394)
T ss_pred ccCccc--------------------------c----Ccc----ccccCChHH-HHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0 000 001111111 1111 333444445567778999999
Q ss_pred HH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 012627 262 QS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVI 340 (459)
Q Consensus 262 ~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (459)
++ +|+++.+.+.......++..+++++.+++.||+++|+.+.....+..+...++... + + .+....
T Consensus 233 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~-----------~-~-~~~~~~ 299 (394)
T PRK03699 233 QKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT-----------D-D-PSHLLY 299 (394)
T ss_pred HHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc-----------C-C-chHHHH
Confidence 65 89999999999999999999999999999999999987765544433332222110 1 1 112222
Q ss_pred HHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 012627 341 VICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYF 420 (459)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (459)
..+..+.+.+..++ .......|..|. .++...+.......+|..++|.+.|.+.+..++...+....++.+++.+...
T Consensus 300 ~~~~~G~~~~~~~~-~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (394)
T PRK03699 300 AILGLGFFSSAIYT-TIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCI 377 (394)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHH
Confidence 33333333332332 223344455553 3567788888889999999999999999988766655554555555544444
Q ss_pred hcC
Q 012627 421 FLP 423 (459)
Q Consensus 421 ~~~ 423 (459)
..+
T Consensus 378 ~~~ 380 (394)
T PRK03699 378 LLG 380 (394)
T ss_pred HHH
Confidence 443
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=244.99 Aligned_cols=349 Identities=16% Similarity=0.176 Sum_probs=237.2
Q ss_pred ccCccccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 012627 18 AHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMG 97 (459)
Q Consensus 18 ~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 97 (459)
..-..++++|++++..|++.+.+.+.+.+.+|+.|+++|||+||+++..|..+|.++.+.++++..||+++++|.+.|+|
T Consensus 55 v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiG 134 (493)
T KOG1330|consen 55 VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIG 134 (493)
T ss_pred hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34455788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hcccCCCh
Q 012627 98 IGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETP 176 (459)
Q Consensus 98 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p 176 (459)
.+...|.++++++|.+|..+|++++++++.+.++|..+|.+.+........ .|||.|++.++++++..++ .++++|++
T Consensus 135 eAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-~Wr~af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 135 EASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-WWRWAFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred hhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-ceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence 999999999999999999999999999999999999999988655544443 3999999999999998666 55677765
Q ss_pred hhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHh
Q 012627 177 NSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFY 256 (459)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (459)
|. ..++.. +++.. .+...+..++.+.+.+.+......+... ........+.+|
T Consensus 214 rg-----a~~~~~-------~~~~~----------~~~~ts~~kDl~~l~~~~v~v~~sl~~~-----a~~fv~Gs~sww 266 (493)
T KOG1330|consen 214 RG-----ARDEVD-------GENKM----------VKPFTSVWKDLKVLAKIKVFVLSSLGII-----AAQFVIGSLSWW 266 (493)
T ss_pred cc-----cccccc-------cCCcC----------CCCccchHHHHHHHHccCceeeehHHHH-----HHHHhccccchh
Confidence 32 111100 00000 0000001112223333333332222222 222222334455
Q ss_pred HHHHH----HHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCc----ceeehhhHHHHHHHHHHHHHHHHHhcCCC
Q 012627 257 APVIF----QSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRR----AFFLEAGTEMIIYMVIVAITLALEFGEGK 328 (459)
Q Consensus 257 ~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (459)
.|.+. +-.|++..+..++..+...++.+|.+++|.++||+.|+ ....+.-+.+..+.............
T Consensus 267 ~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~--- 343 (493)
T KOG1330|consen 267 APAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPA--- 343 (493)
T ss_pred hhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHh---
Confidence 55544 33567777777888888999999999999999995432 22233333333332222221111110
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHH-HHHHHHhhh
Q 012627 329 PLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQ-AFLAALCHL 399 (459)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~ 399 (459)
....+.+..+++..+........+.+..... .|++|++.|.++.++...+..+.+-.+++ +.|.+.|+.
T Consensus 344 -~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~-l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 344 -FTSSSMIFGLILFLVGETISWFNWATNNPIF-LEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred -hhhHHHHHHHHHHHHHHHHHhccccccccee-eEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 1123334444444444444444555554444 69999999999999987777665555444 888887654
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=260.35 Aligned_cols=365 Identities=15% Similarity=0.103 Sum_probs=238.8
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHH-HHHHhhhhhhhh
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLL-GRIFLGMGIGFG 101 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~g~~ 101 (459)
.+++|.|.++.+++.+.+.++..++.+++|+++||+|||++++.+.++.++++++++++++++.+++ .|++.|++.+..
T Consensus 46 ~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~ 125 (455)
T TIGR00892 46 QQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFN 125 (455)
T ss_pred HHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhh
Confidence 5678889999999999999999999999999999999999999999999999999999999998875 579999999987
Q ss_pred cchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhccc-CCChhhHH
Q 012627 102 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL-PETPNSLV 180 (459)
Q Consensus 102 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l-~e~p~~~~ 180 (459)
.+....++.++++ ++|+++.++...+..+|..++|+++... .+..|||+.|++.+++.++..+..+++ ++.+..
T Consensus 126 ~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l--~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~-- 200 (455)
T TIGR00892 126 FQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYL--FESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQ-- 200 (455)
T ss_pred hhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHH--HHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccc--
Confidence 7888888999996 7899999999999999999999985433 345689999999998877665444333 322210
Q ss_pred hcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHH
Q 012627 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVI 260 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (459)
.+.+.++ + +........+.... ....++..+..+ .+.++++..+ . .. ...+....+......++|.+
T Consensus 201 ~~~~~~~-~---~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~---~-~~-~~~~l~~~~~~~~~~~l~~~ 267 (455)
T TIGR00892 201 RVSKSKS-K---EGLPPDGSTKKLSK---KSTAEKINRFLD-FSLFTHRGFL---V-YL-SGNVIMFLGFFAPIIFLVPY 267 (455)
T ss_pred ccccccc-c---ccCCCCCccccccc---cchhhhhhhhcc-hHHhcCchHH---H-HH-HHHHHHHHHccchHHHHHHH
Confidence 0000000 0 00000000000000 000000000001 1234333322 1 11 22333334445566778888
Q ss_pred HHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh--CCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHH
Q 012627 261 FQSLGFGSGAALYSSVITGIALCIAALISMAFVDKF--GRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFL 338 (459)
Q Consensus 261 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (459)
.++.|++..+++......+++.++++++.+++.||. ++|+...........+...+.... . ...+..
T Consensus 268 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~----------~-~~~~~~ 336 (455)
T TIGR00892 268 AKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL----------A-GDYTGL 336 (455)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH----------h-chHHHH
Confidence 888999999999999999999999999999999974 233322222211111111111110 0 112333
Q ss_pred HHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHH
Q 012627 339 VIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK-FGIFLVFGGLVVIMSAF 417 (459)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 417 (459)
++...+.+.+.+... +.......|.+|++.++++.|+.+....++.+++|.+.|.+.+..+ +...+...+++.+++.+
T Consensus 337 ~i~~~~~G~~~g~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 337 VIYCIFFGLSFGSVG-ALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHHHhchHH-HHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 344445555544333 3345556788999999999999999999999999999999988764 54444444443333333
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=240.81 Aligned_cols=347 Identities=14% Similarity=0.074 Sum_probs=239.0
Q ss_pred cccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHhhhhh
Q 012627 24 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA-----VHISMLLLGRIFLGMGI 98 (459)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~ 98 (459)
+++|+|.+|.+++.+++.+++.++.++.|++.||+|+|+++.++.+++++.++..+++ ++++.+++.|++.|++
T Consensus 63 ~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig- 141 (462)
T PRK15034 63 IGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA- 141 (462)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-
Confidence 3689999999999999999999999999999999999999999999999999999987 8999999999999998
Q ss_pred hhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccc----------------cccCchhhHHHHhhHHHH
Q 012627 99 GFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTE----------------KIHPWGWRLSLGLATVPA 162 (459)
Q Consensus 99 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~----------------~~~~~gwr~~f~~~~~~~ 162 (459)
+..++.....+++|+|+++||+++|+.....++|..+++++..... ..+..+||...++.+++.
T Consensus 142 g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~ 221 (462)
T PRK15034 142 GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLL 221 (462)
T ss_pred HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHH
Confidence 7788999999999999999999999997666677665544421111 001346999988888887
Q ss_pred HHHHHHhcc-cCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHH
Q 012627 163 TLMFVGGLF-LPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGI 241 (459)
Q Consensus 163 ~~~~~~~~~-l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (459)
++..++.++ .++.|. .+ ....+..+.+|++..|... +
T Consensus 222 iv~~i~~~~~~~~~~~---~~----------------------------------~~~~~~~~vlk~~~~Wlls-----l 259 (462)
T PRK15034 222 AIATIAAWSGMNDIAS---SR----------------------------------ASIADQLPVLQRLHLWLLS-----L 259 (462)
T ss_pred HHHHHHHHHhCCCccc---cc----------------------------------cCHHHHHHHhCCCchhHHH-----H
Confidence 776655444 444331 00 0011233455555533332 4
Q ss_pred hHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHH
Q 012627 242 PAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLA 321 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 321 (459)
.+++.+..+..+.+++|++.++ .++............+...+.++++|+++||+|+++.+..+.....+..........
T Consensus 260 ly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp 338 (462)
T PRK15034 260 LYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLP 338 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677777788899999866 233333333344456778888999999999999999888777666555544333220
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCc---------------------ccccccchHHHHH
Q 012627 322 LEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPL---------------------EMRSAGQSVVVCN 380 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---------------------~~~~~~~g~~~~~ 380 (459)
. .+....+...........+.+.+.+++ +-++.+.+|+ ++.|.+.|+....
T Consensus 339 ----~---~~~~~~~~~~~~~~~l~~~~G~gngsv-fk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~ 410 (462)
T PRK15034 339 ----G---TGSGNFIAFYAVFMGLFLTAGLGSGST-FQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAI 410 (462)
T ss_pred ----c---ccccHHHHHHHHHHHHHHHhcccchHH-HHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHH
Confidence 0 011222333333333344445555444 3334466663 1457888999999
Q ss_pred HHHHHHHHHHHHHHHHhhhh-HHH-HHHHHHHHHHHHHHHHHhc
Q 012627 381 NLLFTALIAQAFLAALCHLK-FGI-FLVFGGLVVIMSAFIYFFL 422 (459)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~ 422 (459)
+.+|+++.|.+++...+..| +.. +..+.+...++..+.+.+.
T Consensus 411 G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 411 GAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred HHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999887765 333 3344444444444444433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=247.42 Aligned_cols=327 Identities=15% Similarity=0.057 Sum_probs=240.3
Q ss_pred cccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHhhhhhhh
Q 012627 26 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV-----HISMLLLGRIFLGMGIGF 100 (459)
Q Consensus 26 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~g~ 100 (459)
.+.+..+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.++.++.+ +++.+++.|++.|++.+.
T Consensus 29 ~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 108 (365)
T TIGR00900 29 GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAF 108 (365)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 566788899999999999999999999999999999999999999999999888887 999999999999999999
Q ss_pred hcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcc--cCCChhh
Q 012627 101 GNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF--LPETPNS 178 (459)
Q Consensus 101 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~--l~e~p~~ 178 (459)
..+...+++.|++|+++|++++++.+.+.++|.+++|.++.... +..+||+.|++.++..++..+..+. .||+++.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (365)
T TIGR00900 109 FTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY--ATLGIKWAIWVDAVGFAISALLIVSVRIPELAAS 186 (365)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCc
Confidence 99999999999999999999999999999999999999955443 3458999999988776665444333 3333210
Q ss_pred HHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHH-HhH
Q 012627 179 LVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSIL-FYA 257 (459)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 257 (459)
++++.++ +..++.++.++..++++..+.... ..+.......... .+.
T Consensus 187 --~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 234 (365)
T TIGR00900 187 --EIQALSN-------------------------AVLRDTREGIKFVLKNPLLRTLLL-----LALLFNLVFAPAIVALF 234 (365)
T ss_pred --cccccch-------------------------hHHHHHHhHHHHHHcCcHHHHHHH-----HHHHHHHHHHHHHHHHh
Confidence 0000000 000011122344455443332221 1222222223333 677
Q ss_pred HHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHH
Q 012627 258 PVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGI 336 (459)
Q Consensus 258 ~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (459)
|.+.++ +|.++.+.+.......++.+++.++.+++.||.+||+....+.....++........ . ..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~ 302 (365)
T TIGR00900 235 PYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTP-----------P-NFP 302 (365)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhc-----------h-hHH
Confidence 888876 899999999999999999999999999999999999877655444444443333221 0 123
Q ss_pred HHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 012627 337 FLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL 399 (459)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 399 (459)
...+...+.+.+.+... +....+..|..|++.|+++.|+.+....++..+++.+.|.+.|..
T Consensus 303 ~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~ 364 (365)
T TIGR00900 303 LFLVLWFAIGVGYGPIN-VPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL 364 (365)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444445555544433 444566679999999999999999999999999999999998864
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=244.00 Aligned_cols=345 Identities=15% Similarity=0.137 Sum_probs=239.2
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhh-HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhh
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIM-VGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFG 101 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 101 (459)
.+++|.|..+.|++.+.+.+...+.+++.|+++||+||||.++ .+.++..++.++++++++++.+++.|++.|.+.+..
T Consensus 25 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 104 (375)
T TIGR00899 25 SEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTA 104 (375)
T ss_pred HcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhh
Confidence 4556778889999999999999999999999999999988765 466666777888899999999999999999888888
Q ss_pred cchhhHHHHhcCCCccchhH--HHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hcccCCChhh
Q 012627 102 NQAVPLYLSEMAPAKIRGAV--NQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNS 178 (459)
Q Consensus 102 ~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p~~ 178 (459)
.|...++..|+.|+++|++. .+....+.++|.++||.++... .+..+||+.|++.++..++..+. ++++||.|+.
T Consensus 105 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
T TIGR00899 105 NPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWL--ALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRG 182 (375)
T ss_pred HHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHH--HHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 88888899999888777755 5788888999999999985444 34468999999998887766555 4458887642
Q ss_pred HHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHH
Q 012627 179 LVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAP 258 (459)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (459)
...++ + +.+.++.++++..+..... .+...........+.|
T Consensus 183 ~~~~~---~-------------------------------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 223 (375)
T TIGR00899 183 APGAL---T-------------------------------RLEVRGLLASRDTRLLFVA-----CTLMWGCNILYIINMP 223 (375)
T ss_pred ccccc---C-------------------------------cchhhhhhcCcchHHHHHH-----HHHHHHHHHHHHhhhH
Confidence 10000 0 0011122333332222211 1111222233445667
Q ss_pred HHHH-HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHH
Q 012627 259 VIFQ-SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIF 337 (459)
Q Consensus 259 ~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (459)
.+++ ++|.++.+.+..........+++.++.+++.||++||+.+..+.....+........ +..+.
T Consensus 224 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~ 290 (375)
T TIGR00899 224 LLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD-------------NSLWA 290 (375)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH-------------HHHHH
Confidence 7764 589998888888777777788888999999999999987765544333322222111 11222
Q ss_pred HHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 012627 338 LVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAF 417 (459)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (459)
......+.+.+.+... +....+..|..|++ ++++.++.+...+++..+++.+.+.+.+..++...+...+++.+.+.+
T Consensus 291 ~~~~~~~~g~~~g~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 368 (375)
T TIGR00899 291 LLMLQLLNAIFIGILA-GIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALF 368 (375)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 3333333344433332 33345567887764 679999999999999999999999999888877766666666666666
Q ss_pred HHHhcC
Q 012627 418 IYFFLP 423 (459)
Q Consensus 418 ~~~~~~ 423 (459)
...+++
T Consensus 369 ~~~~~~ 374 (375)
T TIGR00899 369 CLLLIK 374 (375)
T ss_pred HHheec
Confidence 655554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-30 Score=245.51 Aligned_cols=348 Identities=15% Similarity=0.122 Sum_probs=245.1
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+++|.|..+.++..+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++|++.+...
T Consensus 40 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~ 119 (406)
T PRK15402 40 VEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIG 119 (406)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hcccCCChhhHHh
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVE 181 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p~~~~~ 181 (459)
+...+++.|++|+++|.+++++......+|..++|.++.... +..+||+.|++.++..++..+. .+.+||+++..
T Consensus 120 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 195 (406)
T PRK15402 120 AVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI--HVLPWRGMFVLFAALAALSFFGLWRAMPETAGRV-- 195 (406)
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HccCccHHHHHHHHHHHHHHHHHHHhCCCCCccc--
Confidence 899999999999999999999999888899999999854433 3458999999988887776554 34477765310
Q ss_pred cCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHH
Q 012627 182 QGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF 261 (459)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (459)
++..+ . ++...+++..++++..+... +..............+.|.++
T Consensus 196 -~~~~~-----------------~----------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~ 242 (406)
T PRK15402 196 -GEKLS-----------------L----------KELGRDYKLVLKNRRFVAGA-----LALGLVSLPLLAWIALSPVIL 242 (406)
T ss_pred -ccccc-----------------H----------HHHHHHHHHHHcCcHHHHHH-----HHHHHHHHHHHHHHHHhHHHH
Confidence 00000 0 00011233444444322211 112222222334445567776
Q ss_pred H-HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 012627 262 Q-SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVI 340 (459)
Q Consensus 262 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (459)
+ ++|+++.+.+.......++.+++.++.+++.||+++|+.+..+.....++..+....... .....+....
T Consensus 243 ~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~ 314 (406)
T PRK15402 243 ISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVI--------SSHAYLWLTA 314 (406)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHc--------ccccHHHHHH
Confidence 4 489988888888777788889999999999999999988776666555555554443210 0011222333
Q ss_pred HHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 012627 341 VICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAF 417 (459)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (459)
...+.+.+.+...++. .... ...+++.+|++.++.+....++..+++.+.+.+.+..+........+++.+..+.
T Consensus 315 ~~~~~g~g~~~~~~~~-~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 389 (406)
T PRK15402 315 GLSLYAFGIGLANAGL-YRLT-LFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLL 389 (406)
T ss_pred HHHHHHHHHHHHhhhH-HHHH-hhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHH
Confidence 4444444444433332 2222 2234478999999999999999999999999988876655444444444444333
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=9e-32 Score=251.84 Aligned_cols=352 Identities=14% Similarity=0.077 Sum_probs=239.3
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+++|.|..+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+...
T Consensus 22 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 101 (379)
T TIGR00881 22 VEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGW 101 (379)
T ss_pred HHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccC
Confidence 45677888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHH-HHhccccccCchhhHHHHhhHHHHHHHHH-HhcccCCChhhHH
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANL-INYGTEKIHPWGWRLSLGLATVPATLMFV-GGLFLPETPNSLV 180 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~-~~~~~~~~~~~gwr~~f~~~~~~~~~~~~-~~~~l~e~p~~~~ 180 (459)
+...+++.|++|+++|++++++...+.++|..+++. ++... ....+||+.|++.+++.++..+ ..++.||+|+...
T Consensus 102 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (379)
T TIGR00881 102 PPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGI--AELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCG 179 (379)
T ss_pred CchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHH--HhcCCchhHHHHHHHHHHHHHHHHheeeCCCccccc
Confidence 999999999999999999999999999999999994 53322 2345899999998887766544 4555777764221
Q ss_pred hcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHH
Q 012627 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVI 260 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (459)
.+++.++.. ++.+.+. .+++++.+..+...++.++++..+... +..+...........+.|.+
T Consensus 180 ~~~~~~~~~---------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 242 (379)
T TIGR00881 180 LPPAEEMPN---------EEPDGDA---EKKEEELTKKQIFLQYVLLNKVLWYIS-----LGYVFVYVVRTGILDWSPLY 242 (379)
T ss_pred cCccccCcc---------ccccccc---ccccccccchHHHHHHHHhcchHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 111000000 0000000 000000000111223344443322211 23333444445667788888
Q ss_pred HHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 012627 261 FQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLV 339 (459)
Q Consensus 261 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (459)
+++ .|+++.+.+.......++.+++.++.+++.||..+++..................... .+....+...
T Consensus 243 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 314 (379)
T TIGR00881 243 LTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL--------NPAANPLMDL 314 (379)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc--------CcchhHHHHH
Confidence 865 7999999999999999999999999999999875444332222221111111111110 0011112222
Q ss_pred HHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 012627 340 IVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFG 402 (459)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (459)
......+.... ...+....+..|.+|++.|+++.|+.+....++..+++.+.|.+.++.++.
T Consensus 315 ~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 376 (379)
T TIGR00881 315 ICLFALGFLVY-GPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWA 376 (379)
T ss_pred HHHHHHHHHHh-hhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccc
Confidence 22222222221 222233445679999999999999999999999999999999999987754
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=249.92 Aligned_cols=256 Identities=16% Similarity=0.185 Sum_probs=203.1
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.++.+....+.+.+.++++++++++.+|+|.+.||++..+.+....+++++..++....+|++.+++.|++.|+.+++.+
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~w 152 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGW 152 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccc
Confidence 34455666677999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhcccc----ccCchhhHHHHhhHHHHHHHHHH-hcccCCChh
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEK----IHPWGWRLSLGLATVPATLMFVG-GLFLPETPN 177 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~----~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p~ 177 (459)
|....+++.|+.++||++.++++.+..++|.++|++++++... ....||||.|++.++++++..++ .+++|+.|.
T Consensus 153 P~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 153 PGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred hHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 9999999999999999999999999999999999999887433 22368999999999999988665 566999986
Q ss_pred h--HHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHH
Q 012627 178 S--LVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILF 255 (459)
Q Consensus 178 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (459)
. ..++++++-..+..++.+... ..++.++..+++.++++..+... +..++.....+.+.+
T Consensus 233 ~~~fl~~~ek~~~~~~~~~~~~~~-------------~~~~~~~~~~~~a~~dp~vw~~~-----l~~~~~~lv~~~~~~ 294 (495)
T KOG2533|consen 233 KAWFLTDEEKELVVERLRESPSGG-------------IENKFKWKGFKEALKDPGVWPFS-----LCYFFLKLVNYGFSY 294 (495)
T ss_pred hccccchHHHHHHHHHHHhccCCC-------------cccccCHHHHHHHHhchhHHHHH-----HHHHHHhhccccHHH
Confidence 2 211111111111111000000 00001233456666666544333 566677778888999
Q ss_pred hHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 012627 256 YAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKF 296 (459)
Q Consensus 256 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 296 (459)
|+|.++++ .|++..++..+..+..++++++.+++|+++||.
T Consensus 295 ~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~ 336 (495)
T KOG2533|consen 295 WLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRL 336 (495)
T ss_pred HHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHH
Confidence 99999988 679999999999999999999999999999995
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-30 Score=243.93 Aligned_cols=331 Identities=14% Similarity=0.151 Sum_probs=238.0
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+++|.|+.+.+++.+.+.++..++++++|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+...
T Consensus 32 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 111 (385)
T TIGR00710 32 AADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGS 111 (385)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hcccCCChhhHHh
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVE 181 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p~~~~~ 181 (459)
+...+++.|++|+++|++++++.+....+|..+++.++... .+..+||+.|++.++..++..+. .++.||+++..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 187 (385)
T TIGR00710 112 VISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYI--LVWLSWHAIFAFLSLAGILLSALIFFILPETLPYE-- 187 (385)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc--
Confidence 99999999999999999999999999999999999996543 33458999999988877766544 44567764210
Q ss_pred cCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHH
Q 012627 182 QGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF 261 (459)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (459)
++ ++. ++...++++.++++..+...+ ..............+.|.++
T Consensus 188 -~~-~~~---------------------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 233 (385)
T TIGR00710 188 -AR-IQI---------------------------STYFETFLLLLKSKMFWGYAL-----IYGASFGGFFAFFSGAPFVY 233 (385)
T ss_pred -cc-CCH---------------------------HHHHHHHHHHHcCchhHHHHH-----HHHHHHHHHHHHHHcChHHH
Confidence 00 000 000112334444443332221 12222333445566678777
Q ss_pred H-HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 012627 262 Q-SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVI 340 (459)
Q Consensus 262 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (459)
+ ++|.++.+.+.......++.+++.++.+++.||+++|+.+..+.....++..++...... ..........
T Consensus 234 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 305 (385)
T TIGR00710 234 IDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAIL--------GLGSWAMIIG 305 (385)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHh--------ccchHHHHHH
Confidence 5 589999999999999999999999999999999999988776655555554444332210 0011122222
Q ss_pred HHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 012627 341 VICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKF 401 (459)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (459)
...+.+.+.+.... .......|..| +.++++.++.+.....++.+.+++.+...+..++
T Consensus 306 ~~~~~g~~~~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 364 (385)
T TIGR00710 306 PMMFVGIGNSMISS-IAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHGNTAW 364 (385)
T ss_pred HHHHHHHHHHHHHH-HHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccccChH
Confidence 33334444443332 33444457776 5689999999988888778888877754443333
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-30 Score=251.09 Aligned_cols=358 Identities=16% Similarity=0.149 Sum_probs=250.8
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|+++|++.+...
T Consensus 29 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~ 108 (485)
T TIGR00711 29 AGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLI 108 (485)
T ss_pred HHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHH
Confidence 45577888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hcccCCChhhHHh
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVE 181 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p~~~~~ 181 (459)
+...+++.|++|+++|+++++++..+..+|..+||.++.. ..+..+||+.|++.+.++++..++ .+++||+++. .
T Consensus 109 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~--l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~ 184 (485)
T TIGR00711 109 PLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGW--IIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--A 184 (485)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhH--hccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc--c
Confidence 9999999999999999999999999999999999999543 345578999999988887766554 3446765431 1
Q ss_pred cCCHHHHHHH------------HHHHcCCCc-chHHHHHHH--------HHHHHHhhhcCch--hHHhhhcCCCchHHHH
Q 012627 182 QGKLDEARKV------------LEKVRGTAN-VDAEFSDLI--------DASNAARAIKNPF--RNLFKKKNRPQLVIGA 238 (459)
Q Consensus 182 ~~~~~~~~~~------------~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 238 (459)
+++.+..... ..+...... .+.+..... .....+...+++. .+.++++..+...
T Consensus 185 ~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 261 (485)
T TIGR00711 185 SENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGC--- 261 (485)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHH---
Confidence 1111111100 000000000 000000000 0000111111222 2344444332222
Q ss_pred HHHhHHHhhcchhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHH
Q 012627 239 LGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVA 317 (459)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 317 (459)
+..+......+...++.|.++++ +|+++.+++....+..++.+++.++.+++.||++||+.+..+..+..++...+.
T Consensus 262 --~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~ 339 (485)
T TIGR00711 262 --VYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRA 339 (485)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHh
Confidence 22333344455667788989876 899999999999999999999999999999999999877665555544444333
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 012627 318 ITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALC 397 (459)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 397 (459)
... .+....+.......+.+.+.+....+.... ..+..|++.++++.|+.+....+++.+++.+.+.+.+
T Consensus 340 ~~~---------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 340 FTF---------TPDTPFLAIALPQFIRGFGMGCFFMPLTTI-ALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred ccC---------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 011112223333444555555444444333 3577899999999999999999999999999999887
Q ss_pred hh
Q 012627 398 HL 399 (459)
Q Consensus 398 ~~ 399 (459)
+.
T Consensus 410 ~~ 411 (485)
T TIGR00711 410 NR 411 (485)
T ss_pred HH
Confidence 54
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.6e-30 Score=239.00 Aligned_cols=335 Identities=13% Similarity=0.058 Sum_probs=231.8
Q ss_pred cccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcc
Q 012627 24 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQ 103 (459)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 103 (459)
+++|.|..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.++++|+++|++.+...+
T Consensus 34 ~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~ 113 (381)
T PRK03633 34 AQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWV 113 (381)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred hhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHH-HHhcccCCChhhHHhc
Q 012627 104 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMF-VGGLFLPETPNSLVEQ 182 (459)
Q Consensus 104 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~-~~~~~l~e~p~~~~~~ 182 (459)
...+.+.+..++++|+++++++..+.++|..+|+.++...... ..|.. .+..+....... +.....+|+++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----- 185 (381)
T PRK03633 114 VVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE--LMSVL-PWVTGLVLAAILPLLFTRILNQQA----- 185 (381)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--ccchH-HHHHHHHHHHHHHHHHhcccCCCC-----
Confidence 8888888999999999999999999999999999996544322 11222 222222221111 11112222110
Q ss_pred CCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHHH
Q 012627 183 GKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ 262 (459)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (459)
++ +.+.+.++.++++..+.... ..+...........+.|.+++
T Consensus 186 ~~--------------------------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~~~~ 228 (381)
T PRK03633 186 EN--------------------------------HDSTSIWPMLKLRQARLGVN-----GCIISGIVLGSLYGLMPLYLN 228 (381)
T ss_pred CC--------------------------------CCCCCHHHHHHhcchHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 00 00112334444444332111 111122233445567898888
Q ss_pred HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 012627 263 SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVI 342 (459)
Q Consensus 263 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (459)
+.|.++.+.+.......++.+++++..+++.||+++|+.+..+.....++..... .. . . .....
T Consensus 229 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~~------------~--~-~~~~~ 292 (381)
T PRK03633 229 HQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-SQ------------A--A-MAPAL 292 (381)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-hh------------H--H-HHHHH
Confidence 8899988889888888999999999999999999999877666555544433221 00 0 0 11111
Q ss_pred HHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 012627 343 CLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYF 420 (459)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (459)
.+.+.+.. ...|.......|..|++.++...+..+...++|..++|.+.|.+.|+.++...+...+.+.+...+..+
T Consensus 293 ~l~g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 293 FILGAAGF-TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHHHHH-hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 22222222 223444555568888877777778888888999999999999999988866655555555554444333
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-30 Score=248.03 Aligned_cols=358 Identities=15% Similarity=0.157 Sum_probs=246.0
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+++|.+..+.+++.+.+.++..++.+++|+++||+|||+++..+.++.+++.++++++++++.+++.|+++|++.+...
T Consensus 37 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~ 116 (471)
T PRK10504 37 AQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMV 116 (471)
T ss_pred HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHH
Confidence 34578888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHh-cccCCChhhHHh
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLVE 181 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~l~e~p~~~~~ 181 (459)
+...+++.|++|+++|+++.++.....++|..+||.++.... +..|||+.|++......+..+.. ...|+.+. .
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~--~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~ 191 (471)
T PRK10504 117 PVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV--EYASWHWIFLINIPVGIIGAIATLMLMPNYTM---Q 191 (471)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHhCCCccc---c
Confidence 999999999999999999999999999999999999954443 34589999999887766665443 33555432 1
Q ss_pred cCCHHHHHHHHH--------H-HcCCCc---chHHHHHH--------HHHHHHHhhhcCc--hhHHhhhcCCCchHHHHH
Q 012627 182 QGKLDEARKVLE--------K-VRGTAN---VDAEFSDL--------IDASNAARAIKNP--FRNLFKKKNRPQLVIGAL 239 (459)
Q Consensus 182 ~~~~~~~~~~~~--------~-~~~~~~---~~~~~~~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 239 (459)
+.+.+....... . ..+.+. ........ .....+++..+++ ..++++++..+...
T Consensus 192 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l---- 267 (471)
T PRK10504 192 TRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGL---- 267 (471)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHH----
Confidence 112111110000 0 000000 00000000 0000001111111 12344444433222
Q ss_pred HHhHHHhhcchhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHH
Q 012627 240 GIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAI 318 (459)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 318 (459)
...++..........+.|++++. .|.++.+.++...+..++.+++.++.+++.||+++|+.+..+..+..+...++..
T Consensus 268 -~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 346 (471)
T PRK10504 268 -AGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFML 346 (471)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHh
Confidence 22333333445566778888875 8999999999998888888899899999999999999887666655555444332
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012627 319 TLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCH 398 (459)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 398 (459)
.. .....+.......+.+.+.+...++. .....+..|++.++.+.++.+....++..+++.+.+.+.+.
T Consensus 347 ~~----------~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~ 415 (471)
T PRK10504 347 VA----------LLGWYYLLPFVLFLQGMVNSTRFSSM-NTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGL 415 (471)
T ss_pred cc----------ccccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 01111222222333334444344333 34446788999999999999999999999999999998876
Q ss_pred hhH
Q 012627 399 LKF 401 (459)
Q Consensus 399 ~~~ 401 (459)
.++
T Consensus 416 ~g~ 418 (471)
T PRK10504 416 FGQ 418 (471)
T ss_pred hhh
Confidence 654
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-30 Score=238.74 Aligned_cols=344 Identities=15% Similarity=0.093 Sum_probs=236.5
Q ss_pred cccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcc
Q 012627 24 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQ 103 (459)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 103 (459)
++++.+..+.+++.+.+.+++.++.+++|+++||+|||++++.+.+++++++++++++++. ++.|+++|++.+...|
T Consensus 31 ~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~p 107 (393)
T PRK11195 31 KELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSP 107 (393)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4566778889999999999999999999999999999999999999999999888777664 7899999999999999
Q ss_pred hhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCChhhHHhcC
Q 012627 104 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQG 183 (459)
Q Consensus 104 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~~~~~ 183 (459)
...+++.|++|+++|++++++.+...++|.++||.+++..... .|+..+.+.+...++..+..+.+||+|+....++
T Consensus 108 a~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~---~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~ 184 (393)
T PRK11195 108 AKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP---HAEAALAVCALIYLLAALFNLFIPRLGARRPGQS 184 (393)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCcccccccC
Confidence 9999999999999999999999999999999999997655442 3787877776665555555567888763211000
Q ss_pred CHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHHHH
Q 012627 184 KLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS 263 (459)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (459)
+ ++ .+. .++ .+...+.+++++..+....... ..........+..|.++++
T Consensus 185 ~-~~-~~~-------------~~~----------~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 234 (393)
T PRK11195 185 W-NP-IAL-------------LRD----------FFHACRVLWRDKLGRFSLAGTT-----LFWGAGATLRFLVLAWAPV 234 (393)
T ss_pred C-CH-HHH-------------HHH----------HHHHHHHHHhCchhHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 0 00 000 000 0111234455544333222111 1122223344455666655
Q ss_pred -cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 012627 264 -LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVI 342 (459)
Q Consensus 264 -~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (459)
+|.++.+.|......+++.+++++..+++.||.++++.+..+. ...+....+... +..+......
T Consensus 235 ~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~-------------~~~~~~~~~~ 300 (393)
T PRK11195 235 ALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQ-------------HSLLPAYPLL 300 (393)
T ss_pred HcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHH-------------hHHHHHHHHH
Confidence 8999999999999999999999999999999988877655443 222222111111 1123233344
Q ss_pred HHHHHHHhhcccccceeeecccCCccc-ccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 012627 343 CLFVLAYGRSWGPLGWLVPSELFPLEM-RSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIY 419 (459)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (459)
.+.+.+.+....+. .....+..|++. +|++.++.+...+++..++..+.+.+ +..+......+.+++.+.++...
T Consensus 301 ~~~G~~~g~~~~~~-~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 376 (393)
T PRK11195 301 ILIGALGGFFVVPM-NALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMA 376 (393)
T ss_pred HHHHHhhhhhhhhH-HHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHH
Confidence 34455544444444 344467666554 69999999999999999999998855 56665555555555555544433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-30 Score=241.02 Aligned_cols=327 Identities=15% Similarity=0.132 Sum_probs=234.3
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+++|.++.+.+++.+++.+++.++++++|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++|++.+...
T Consensus 33 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~ 112 (401)
T PRK11043 33 QADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAA 112 (401)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCChhhHHhc
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQ 182 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~~~~ 182 (459)
+...+++.|++|++++++..+......++|..++|.++... .+..|||+.|++.++..++..+..++++|+++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 186 (401)
T PRK11043 113 VIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWL--LNHFGWQAIFATLFAITLLLILPTLRLKPSKKA---- 186 (401)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCChHHHHHHHHHHHHHHHHHHHHcCCCCCc----
Confidence 88889999999999999999999999999999999985443 344689999999888877776655555554320
Q ss_pred CCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHHH
Q 012627 183 GKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ 262 (459)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (459)
++.++ .+.++++.++++..+..... .......+.....+.|.+++
T Consensus 187 ~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~p~~~~ 231 (401)
T PRK11043 187 RKQSQ------------------------------DALTFKQLLKSKTYLGNVLI-----FAACSAAFFAWLTGSPFILE 231 (401)
T ss_pred cccch------------------------------HHHHHHHHHcChhHHHHHHH-----HHHHHHHHHHHHHHhHHHHH
Confidence 00000 01123344444332222111 11122233445667888888
Q ss_pred HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 012627 263 SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVI 342 (459)
Q Consensus 263 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (459)
+.|+++.+.++......++.+++.++.+++.||+++|+..........++...+...... . . ...+..+...
T Consensus 232 ~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~-~~~~~~~~~~ 303 (401)
T PRK11043 232 QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLL--S-----H-PSLVPLLIPF 303 (401)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHh--c-----c-CcHHHHHHHH
Confidence 899999888988888888889999999999999998886654444433333322222110 0 0 1112222333
Q ss_pred HHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012627 343 CLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 400 (459)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (459)
.+.+.+.+...+ .......+..| +.++++.|+.+..+..++..++.+.+.+.+...
T Consensus 304 ~~~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 359 (401)
T PRK11043 304 CVMAAANGAIYP-IVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPL 359 (401)
T ss_pred HHHHHHHHHHHH-HHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCCh
Confidence 334444443333 22333345556 579999999999999999999999999877543
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=242.55 Aligned_cols=342 Identities=15% Similarity=0.137 Sum_probs=233.1
Q ss_pred cccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhh
Q 012627 22 ETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFG 101 (459)
Q Consensus 22 ~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 101 (459)
..++++.+..+.++..+++.+++.++++++|+++||+|||+++..+.++++++++++++++|++.++++|+++|++.+..
T Consensus 42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~ 121 (413)
T PRK15403 42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFI 121 (413)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred cchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hcccCCChhhHH
Q 012627 102 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLV 180 (459)
Q Consensus 102 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p~~~~ 180 (459)
.+....++.|++|+++|++++++...+..+|..+||.++.... +..|||+.|++.++..++..+. .+.+||+++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~--~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~-- 197 (413)
T PRK15403 122 ATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALM--HFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKR-- 197 (413)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccc--
Confidence 7777888999999999999999999999999999999965443 3468999999999887777554 4558887531
Q ss_pred hcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHH
Q 012627 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVI 260 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (459)
+++..+ .+...++++++++++..+... +..............+.|.+
T Consensus 198 -~~~~~~---------------------------~~~~~~~~~~ll~~~~~~~~~-----l~~~~~~~~~~~~~~~~P~~ 244 (413)
T PRK15403 198 -GAVPFS---------------------------AKSVLRDFRNVFRNRLFLTGA-----ATLSLSYIPMMSWVAVSPVI 244 (413)
T ss_pred -cCCCCC---------------------------hHHHHHHHHHHHcCHHHHHHH-----HHHHHHHHHHHHHHHhChHH
Confidence 000000 000011234555554333222 22333344445566677888
Q ss_pred HHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 012627 261 FQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLV 339 (459)
Q Consensus 261 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (459)
+++ .|+++.+.++.......+..++..+.+++.++..+++.......+..++..++...... . + +..+...
T Consensus 245 l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~--~-----~-~~~~~~~ 316 (413)
T PRK15403 245 LIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLL--W-----P-HVWLWSV 316 (413)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH--c-----c-ccHHHHH
Confidence 876 68999999998888888888888888777655444443322222223333222221110 0 0 1112223
Q ss_pred HHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 012627 340 IVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGL 410 (459)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (459)
....+.+.+.+...+.... .. ..-....+|++.++.+.....+...++...+++.+......+....++
T Consensus 317 ~~~~l~~~G~~~~~p~~~~-~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 385 (413)
T PRK15403 317 LGTSLYAFGIGLIFPTLFR-FT-LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVV 385 (413)
T ss_pred HHHHHHHHHHHHHhHHHHH-HH-hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 3444444554444433321 11 111222379999999999999999999988887766443333333333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-30 Score=238.98 Aligned_cols=352 Identities=17% Similarity=0.164 Sum_probs=232.1
Q ss_pred cccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcc
Q 012627 24 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQ 103 (459)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 103 (459)
+++|+|+.+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+...+
T Consensus 19 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 98 (377)
T PRK11102 19 ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASV 98 (377)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hcccCCChhhHHhc
Q 012627 104 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQ 182 (459)
Q Consensus 104 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p~~~~~~ 182 (459)
...+++.|++|+++|++++++...+..+|..++|.++... .+..+||+.|++.+++.++..+. .+++||+++. +
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 173 (377)
T PRK11102 99 VINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWL--LVWFSWHAIFWVLALAAILAAALVFFFIPETLPK---E 173 (377)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcChHHHHHHHHHHHHHHHHHHHHhCCccCcc---c
Confidence 9999999999999999999999999999999999995443 33458999999988887776444 4557776421 0
Q ss_pred CCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHHH
Q 012627 183 GKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ 262 (459)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (459)
++.+ . +.+ +...++++.++++..+ ... +.......+......+.|.++.
T Consensus 174 ~~~~--------------~--~~~----------~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~ 222 (377)
T PRK11102 174 RRQP--------------F--HLR----------TTIRNFASLFRHKRVL---GYM--LASGFSFAGMFSFLTAGPFVYI 222 (377)
T ss_pred ccCC--------------C--ChH----------HHHHHHHHHHcChHHH---HHH--HHHHHHHHHHHHHHHcCHHHHH
Confidence 0000 0 000 0011223344443221 111 1222333334445555566654
Q ss_pred -HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 012627 263 -SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIV 341 (459)
Q Consensus 263 -~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (459)
.+|+++.+.+.......++.+++.++.+++.||+|+|+.+..+.....+..+........ ....+.....
T Consensus 223 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 293 (377)
T PRK11102 223 ELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL---------DLGFWALVVG 293 (377)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhHHHHHHH
Confidence 489999999999999999999999999999999999988776665443332222221100 0111222222
Q ss_pred HHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 012627 342 ICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFF 421 (459)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (459)
........+... +.......|..| +.++++.++.+......+.....+.+...+.. .........++.+.+.+.+++
T Consensus 294 ~~~~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 370 (377)
T PRK11102 294 VAAFVGCVSMIS-SNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLAPFTS-AWPMVWSMAFCSILSILFYLY 370 (377)
T ss_pred HHHHHHHHHHhh-HHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhccCCC-hHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222 222334456666 67899888877665443333333333332222 222333334444444444444
Q ss_pred cC
Q 012627 422 LP 423 (459)
Q Consensus 422 ~~ 423 (459)
.+
T Consensus 371 ~~ 372 (377)
T PRK11102 371 AS 372 (377)
T ss_pred hc
Confidence 43
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=235.02 Aligned_cols=352 Identities=15% Similarity=0.062 Sum_probs=234.0
Q ss_pred ccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHH---h-hhhHHHHHHHHHHhhhhhhh
Q 012627 25 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA---C-AVHISMLLLGRIFLGMGIGF 100 (459)
Q Consensus 25 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~r~l~G~~~g~ 100 (459)
++|.|+.+.+++.+.+.+++.++++++|+++||+|||+++..+.++++++++++. . .++++.+++.|++.|++.+.
T Consensus 42 ~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~ 121 (402)
T TIGR00897 42 ALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPL 121 (402)
T ss_pred HhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHH
Confidence 3577888889999999999999999999999999999999999999999877653 3 35888999999999999998
Q ss_pred hcchhhHHHHhcCCCccchhHHHHHHHHHHHHH-HHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hcccCCChhh
Q 012627 101 GNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGI-LVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNS 178 (459)
Q Consensus 101 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p~~ 178 (459)
..+...+.+.+++|+++|++++|+..++.++|. +++|.++... .+..||+..++.......+..++ .++.+|.++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (402)
T TIGR00897 122 FAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYA--IPAFGEMNTLWSALAFVLTGGVIALFSNKDIFTP 199 (402)
T ss_pred HHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHHHHHHHHHHhccCCCCCc
Confidence 888888889999999999999999999999997 5788884333 33456665555443333332222 2334443210
Q ss_pred HHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHH
Q 012627 179 LVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAP 258 (459)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (459)
. .+++.+ +.+ +.++.++.+++++..+... +..+......+...++.|
T Consensus 200 ~-~~~~~~-----------------~~~----------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p 246 (402)
T TIGR00897 200 Q-HMQTRE-----------------KFS----------ELGKAATILFTNPNVLLGG-----MVRIINTIGLFGFAVFLP 246 (402)
T ss_pred c-cccCCc-----------------chh----------hHHHHHHHHHcChhHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 0 000000 000 0011133445444322211 223344455667788999
Q ss_pred HHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeeh-hhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHH
Q 012627 259 VIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLE-AGTEMIIYMVIVAITLALEFGEGKPLPKGIGIF 337 (459)
Q Consensus 259 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (459)
.+++++|++..+.+.......++..++.+..|+++||++||+.... +.....+....+...... ..+..+.
T Consensus 247 ~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~--------~~~~~~~ 318 (402)
T TIGR00897 247 MFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH--------FGHSFAV 318 (402)
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc--------cCCcHHH
Confidence 9998899999888888888899999999999999999998876532 222222222222111100 0011222
Q ss_pred HHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 012627 338 LVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAF 417 (459)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (459)
..+...+.+.+.+. ..+.. ....|..| +.|+++.|+.+....+++.++|.+.+.+.+..|+...+.+.+++.+++.+
T Consensus 319 ~~~~~~~~G~~~~~-~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~ 395 (402)
T TIGR00897 319 ALIIAIALGIFLAG-YVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAF 395 (402)
T ss_pred HHHHHHHHHHHHHH-HHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 33333334443332 23332 23356655 57999999999999999999999999999988866555555555555554
Q ss_pred HHHhc
Q 012627 418 IYFFL 422 (459)
Q Consensus 418 ~~~~~ 422 (459)
...++
T Consensus 396 ~~~~~ 400 (402)
T TIGR00897 396 LTAFI 400 (402)
T ss_pred HHHHh
Confidence 44443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=241.18 Aligned_cols=325 Identities=23% Similarity=0.339 Sum_probs=237.6
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+++|.|..+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.++..+++|++.+++.|++.|++.+...
T Consensus 24 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 103 (352)
T PF07690_consen 24 AEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFS 103 (352)
T ss_dssp HCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccccccc
Confidence 56677888899999999999999999999999999999999999999999997777777888899999999999999999
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hcccCCChhhHHh
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVE 181 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p~~~~~ 181 (459)
+...+++.|++|+++|++++++...+.++|.+++|.++.... +..+||+.|++.+++.++..++ ..+++++|+....
T Consensus 104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~--~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~ 181 (352)
T PF07690_consen 104 PASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI--SYFGWRWAFLISAILSLIAAILFILFLPEPPPPRER 181 (352)
T ss_dssp HHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT-
T ss_pred ccccccccccchhhhhhhccccccchhhhhhhcccchhhhhh--hccccccccccccchhhhhhhhHhhhhhhccccccc
Confidence 999999999999999999999999999999999999955443 5568999999999998888664 3445544422111
Q ss_pred cCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcC-chhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHH
Q 012627 182 QGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKN-PFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVI 260 (459)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (459)
+++.++. ++.++... .++.+++++..+... ...+...........+.|.+
T Consensus 182 ~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 232 (352)
T PF07690_consen 182 ESPKESE------------------------SKKPKPLKPGFKSLFKNPVLWILL-----IAFFLFFFVFSGFSFFLPLY 232 (352)
T ss_dssp -SSTTTT--------------------------HHHCCCH-CTHHHHHHCCHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccc------------------------cccccccccccccccccchhhhhh-----hhhhHHHHHHHHhhcccchh
Confidence 1111100 00111122 256666666554111 22333333455577888888
Q ss_pred H-HHcCCC-CCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHH
Q 012627 261 F-QSLGFG-SGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFL 338 (459)
Q Consensus 261 ~-~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (459)
+ +.+|++ ..+.+.......+...++.++.+++.||+++|+..........+....+...... ......
T Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 302 (352)
T PF07690_consen 233 LQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS----------SSPVWL 302 (352)
T ss_dssp CCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH----------CHHHHH
T ss_pred hhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh----------hhHHHH
Confidence 4 568888 6788888999999999999999999999998776665555444444443332211 112333
Q ss_pred HHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHH
Q 012627 339 VIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIA 389 (459)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~ 389 (459)
.....+.+.+.+... +....+..|..|++.++++.|+.+...+++..++|
T Consensus 303 ~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 303 IIALFLIGFGFGIVF-PILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHC-HHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 334444555555444 44466678999999999999999999999998886
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=226.00 Aligned_cols=356 Identities=16% Similarity=0.147 Sum_probs=267.6
Q ss_pred hhhccCccccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhh---hHHHHHHHH
Q 012627 15 RKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV---HISMLLLGR 91 (459)
Q Consensus 15 ~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~r 91 (459)
-..+.....+++++|+.|.+++.++..+..++..++.|.+.||+|.|++..+++++..+-++..+++. ++|++++++
T Consensus 33 ~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~g 112 (417)
T COG2223 33 FSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIG 112 (417)
T ss_pred HHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHH
Confidence 34445555688999999999999999999999999999999999999999999999999999999885 445999999
Q ss_pred HHhhhhhhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCch---hhHHHHhhHHHHHHHHHH
Q 012627 92 IFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWG---WRLSLGLATVPATLMFVG 168 (459)
Q Consensus 92 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~g---wr~~f~~~~~~~~~~~~~ 168 (459)
.+.|++.+ .+.+...++++|+||+++|.++|+.. ..|+|..+...++.... ...+ ||....+..+..++..+.
T Consensus 113 ll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~--~~~g~~~w~~~~~i~~~~l~v~~v~ 188 (417)
T COG2223 113 LLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVA--VAFGFLAWRNVAGIYVVALAIAAVL 188 (417)
T ss_pred HHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999754 78899999999999999999999999 88888887777643322 2335 999999988888886555
Q ss_pred -hcccCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhc-CchhHHhhhcCCCchHHHHHHHhHHHh
Q 012627 169 -GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIK-NPFRNLFKKKNRPQLVIGALGIPAFQQ 246 (459)
Q Consensus 169 -~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (459)
++...|.|+.....++ .. .+++.+++++..|.+. +.++..
T Consensus 189 ~~~~~~d~p~~r~~~~~---------------------------------~~~~~~~~v~~~~~~W~ls-----llY~~t 230 (417)
T COG2223 189 AWLGMNDVPEHRASVKP---------------------------------QLPAQLKAVFSNKDTWLLS-----LLYFAT 230 (417)
T ss_pred HHHHhCCChhhhccccc---------------------------------cchhHHHHHhcCcchHHHH-----HHHHHH
Confidence 5557777642111100 01 2344555555543333 566777
Q ss_pred hcchhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhc
Q 012627 247 LTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFG 325 (459)
Q Consensus 247 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (459)
+.++..+..++|.++++ ++.++.+++.........+.+.++++|+++||+|.+|........++++...........
T Consensus 231 FG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~-- 308 (417)
T COG2223 231 FGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGF-- 308 (417)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccccc--
Confidence 88888899999999975 999999999999999999999999999999999999998888777777776665542110
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh-HHHH
Q 012627 326 EGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK-FGIF 404 (459)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 404 (459)
......+..+........+.+.+.+.+ +-++...+|+ +.|.+.|+....+.+|++..|..++...+..+ +...
T Consensus 309 ----~~~~~~~~~~~~~l~l~~~~G~GnGsv-fk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~ 382 (417)
T COG2223 309 ----GHGGSFVVFVAVFLALFVFAGLGNGSV-FKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGA 382 (417)
T ss_pred ----ccCcchHHHHHHHHHHHHHhccCcchh-eeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHH
Confidence 001223334444445555556666555 5555677775 56899999999999999999999999999887 4444
Q ss_pred HHHHHHHHHHHHHHHH
Q 012627 405 LVFGGLVVIMSAFIYF 420 (459)
Q Consensus 405 ~~~~~~~~~~~~~~~~ 420 (459)
+.+...+.+++.+...
T Consensus 383 f~~~~~~~~~a~v~~~ 398 (417)
T COG2223 383 FMLLLAFYLVALVLTW 398 (417)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444333
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=237.24 Aligned_cols=321 Identities=13% Similarity=0.075 Sum_probs=227.0
Q ss_pred cccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcc
Q 012627 24 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQ 103 (459)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 103 (459)
++.|.|..++|++.+...+...+.++++|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++|++.+...+
T Consensus 39 ~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~ 118 (400)
T PRK11646 39 DQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDP 118 (400)
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 45667888899999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred hhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hcccCCChhhHHhc
Q 012627 104 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQ 182 (459)
Q Consensus 104 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p~~~~~~ 182 (459)
...+++.|++|+++|++++++.....++|..+||.++.... ..+||+.|++.++..++..++ .+++||.+. +
T Consensus 119 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~---~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~----~ 191 (400)
T PRK11646 119 PRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL---QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL----S 191 (400)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc----c
Confidence 99999999999999999999999999999999999965554 358999999988877665443 344555310 0
Q ss_pred CCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHHH
Q 012627 183 GKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ 262 (459)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (459)
++.+ +.+.++++.++++....... ..+...........+.|.+++
T Consensus 192 ~~~~------------------------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~p~~~~ 236 (400)
T PRK11646 192 TVRT------------------------------PVREGMTRVLRDKRFVTYVL-----TLTGYYMLAVQVMLMLPIMVN 236 (400)
T ss_pred ccch------------------------------hhHHHHHHHHcCchHHHHHH-----HHHHHHHHHHHHHHhhhhhHH
Confidence 0000 00112334444443222111 111111112234457888888
Q ss_pred HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHH-HhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 012627 263 SLGFGSGAALYSSVITGIALCIAALISMAFVD-KFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIV 341 (459)
Q Consensus 263 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (459)
+.+.++.+.+.......+....+....+++.| |++.++.+..+..+..++..++.... . .+.....
T Consensus 237 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~------------~-~~~~~~~ 303 (400)
T PRK11646 237 DIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS------------N-LQQLFTL 303 (400)
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh------------h-HHHHHHH
Confidence 76557777888877777766665555566555 45555544444444444443332221 1 1222223
Q ss_pred HHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012627 342 ICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 400 (459)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (459)
..+++.+..... |....+..+..|++.|+++.|+.+....++..++|.+.|.+.|+.+
T Consensus 304 ~~l~~~g~~~~~-p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~ 361 (400)
T PRK11646 304 ICLFYIGSIIAE-PARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK 361 (400)
T ss_pred HHHHHHHHHHHH-ccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 333344433333 3335566799999999999999999999999999999999998753
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-29 Score=235.29 Aligned_cols=336 Identities=14% Similarity=0.067 Sum_probs=229.3
Q ss_pred hHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcchhhHHHHh
Q 012627 32 VLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSE 111 (459)
Q Consensus 32 ~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 111 (459)
+.|++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+ ..+....++.|
T Consensus 55 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~ 133 (408)
T PRK09874 55 WSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIAT 133 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999865 56777888999
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hcccCCChhhHHhcCCHHHHHH
Q 012627 112 MAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKLDEARK 190 (459)
Q Consensus 112 ~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p~~~~~~~~~~~~~~ 190 (459)
++|+++|++++++...+..+|.+++|.++... .+..+||+.|++.++..++..+. .+++||+++.. ++.++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--- 205 (408)
T PRK09874 134 QVPRNKSGWALGTLSTGGVSGALLGPLAGGLL--ADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPV---SKKEM--- 205 (408)
T ss_pred hcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccc---cchhh---
Confidence 99999999999999999999999999995443 33457999999998887766554 44466653210 00000
Q ss_pred HHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHHHHcCCCCCc
Q 012627 191 VLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGA 270 (459)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 270 (459)
.+.+ +..+.++++... .... ...............+.+.+.++.+.+..+
T Consensus 206 ----------------------~~~~----~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (408)
T PRK09874 206 ----------------------LHMR----EVVTSLKNPKLV---LSLF-VTTLIIQVATGSIAPILTLYVRELAGNVSN 255 (408)
T ss_pred ----------------------hHHH----HHHHhCcCCchH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 0000 011122222211 1111 111111222233445566666653322222
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHH
Q 012627 271 ----ALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFV 346 (459)
Q Consensus 271 ----~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (459)
.+......+++.+++.+..+++.||++||+.+..+.....+..+..... ...+...+...+.+
T Consensus 256 ~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g 322 (408)
T PRK09874 256 IAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV-------------QTPLQLGILRFLLG 322 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHH
Confidence 3445556677888888999999999999998776655544444332221 11233333333444
Q ss_pred HHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 012627 347 LAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYF 420 (459)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (459)
.+.+... +.......+..|++.+++..++.+....++..++|.+.|.+.+..++...+...+++.+.+.+...
T Consensus 323 ~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 323 AADGALL-PAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred hhhHhhH-HHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 4444333 322344457788889999999999999999999999999999888877666666655555554443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-29 Score=234.39 Aligned_cols=323 Identities=15% Similarity=0.163 Sum_probs=222.4
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+++|.|+.+.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.+++..+++++.+++.|+++|++.+...
T Consensus 30 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 109 (392)
T PRK10473 30 AADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCY 109 (392)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hcccCCChhhHHh
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVE 181 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p~~~~~ 181 (459)
+...+++.|++|+++|+++.++.+....+|..++|.++.... +..+||+.|++.++..++..+. .+++||+++..
T Consensus 110 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~--~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-- 185 (392)
T PRK10473 110 VVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM--LKFPWQSLFYTMAAMGILVLLLSLFILKETRPAR-- 185 (392)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcc--
Confidence 999999999999999999999999999999999999854433 3458999999988877766554 45577764210
Q ss_pred cCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHH
Q 012627 182 QGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF 261 (459)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (459)
+++..+ . .+..++.++++..+..... .............+.|.++
T Consensus 186 ~~~~~~----------------~--------------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 230 (392)
T PRK10473 186 APAASS----------------K--------------PRENSESLLNRFFLSRLVI-----TTLSVTVILTFVNTSPVLL 230 (392)
T ss_pred cCCccc----------------h--------------HHHHHHHHhCHHHHHHHHH-----HHHHHHHHHHHHHhCHHHH
Confidence 000000 0 0001122222221111111 1111112223344556666
Q ss_pred H-HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 012627 262 Q-SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVI 340 (459)
Q Consensus 262 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (459)
+ ++|+++.+.+......+++.+++.++.+++.||++||+....+.....++.+++..... .+....
T Consensus 231 ~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 297 (392)
T PRK10473 231 MEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPS-------------HAVSLF 297 (392)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHH
Confidence 4 58999888898888999999999999999999999998877766655555554443320 111222
Q ss_pred HHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 012627 341 VICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGI 403 (459)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (459)
...+...+.+..+... ...+..|.+.|+ |.......++..+++.+.+.+.+..++..
T Consensus 298 ~~~l~~~g~~~~~~~~---~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~ 354 (392)
T PRK10473 298 GITLICAGFSVGFGVA---MSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISA 354 (392)
T ss_pred HHHHHHHHHHHHhHHH---HHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 2222222322222221 223444544443 44445556667777777777777666443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-29 Score=231.13 Aligned_cols=321 Identities=23% Similarity=0.314 Sum_probs=258.2
Q ss_pred cccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcc
Q 012627 24 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQ 103 (459)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 103 (459)
+++|.+..+.+++.+...++..++++++|+++||+|||+.+..+.++..++.++..++++++.+.+.|++.|++.+...+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 106 (352)
T cd06174 27 EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYP 106 (352)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccH
Confidence 34477888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCChhhHHhcC
Q 012627 104 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQG 183 (459)
Q Consensus 104 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~~~~~ 183 (459)
...+++.|++|+++|++.+++.....++|..+++.++.... +..+||+.+++.++..++..+...+++ |
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------- 175 (352)
T cd06174 107 AAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA--ESLGWRWLFLILAILGLLLALLLLFLL--R------- 175 (352)
T ss_pred hHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHH--H-------
Confidence 99999999999999999999999999999999999965443 344699999998888777665544332 0
Q ss_pred CHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHHHH
Q 012627 184 KLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS 263 (459)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (459)
...... +..+...........+.|.+.++
T Consensus 176 --------------------------------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 204 (352)
T cd06174 176 --------------------------------------------------LLLLLA-LAFFLLSFGYYGLLTYLPLYLQE 204 (352)
T ss_pred --------------------------------------------------HHHHHH-HHHHHHHhHHHHHHHHHHHHHHH
Confidence 011111 34445555667777888888877
Q ss_pred -cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcc-eeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 012627 264 -LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRA-FFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIV 341 (459)
Q Consensus 264 -~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (459)
.+.+..+.+.......++..++.++.+++.||++||+ .+..+.....++.+...... ..+.....
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------~~~~~~~~ 271 (352)
T cd06174 205 VLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP-------------SLALLLVA 271 (352)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc-------------cHHHHHHH
Confidence 4899999999999999999999999999999999998 77766666666655554321 12334444
Q ss_pred HHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 012627 342 ICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYF 420 (459)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (459)
..+.+.+.+... +....+..|..|+++|++..|+.+....++..+++.+.+.+.+..++...+...+++.+++.+...
T Consensus 272 ~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 272 LLLLGFGLGFAF-PALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHhccc-hhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 555555555444 455667789999999999999999999999999999999999877776666666655555555443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-29 Score=238.12 Aligned_cols=353 Identities=13% Similarity=0.112 Sum_probs=239.5
Q ss_pred cccCchhHHHHHHHhHHHHHHHHHHhhhhhccc-----ccchh-hhHHHHHHHHHHHHHHhh---hhHHHHHHHHHHhhh
Q 012627 26 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-----GRRAS-IMVGSVSFFIGAILNACA---VHISMLLLGRIFLGM 96 (459)
Q Consensus 26 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-----Grr~~-~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~ 96 (459)
.|.|..+++.+ +.....+ ++.+++|+++||+ ||||. +..+.++.+++..++++. ++++.+.+.|++.|+
T Consensus 42 ~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~ 119 (491)
T PRK11010 42 ENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAF 119 (491)
T ss_pred CCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 36778888886 3344444 6899999999999 99985 667888887887777765 478899999999999
Q ss_pred hhhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCCh
Q 012627 97 GIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETP 176 (459)
Q Consensus 97 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p 176 (459)
+.+...+...+++.|++|+++|+++.++...+..+|.++++.++..... ...|||..|++.++..++..+..+++||++
T Consensus 120 ~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~-~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~ 198 (491)
T PRK11010 120 CSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLAD-RYLGWQGMYWLMAALLIPCIIATLLAPEPT 198 (491)
T ss_pred HHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999988544332 135899999999988777766655678865
Q ss_pred hhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHh
Q 012627 177 NSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFY 256 (459)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (459)
+.. ++ ++. . ++....++++.++++..+..... .+...........+
T Consensus 199 ~~~---~~-~~~----------------~---------~~~~~~~l~~~~~~~~~~~~ll~-----~~l~~~~~~~~~~~ 244 (491)
T PRK11010 199 DTI---PV-PKT----------------L---------EQAVVAPLRDFFGRNNAWLILLL-----IVLYKLGDAFAMSL 244 (491)
T ss_pred ccc---cc-ccc----------------h---------hhhHHHHHHHHHcCcCHHHHHHH-----HHHHHHHHHHHHHH
Confidence 310 00 000 0 00001234455544432222211 11222222333445
Q ss_pred HHHHH-HHcCCCCCchhHHHH-HHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchh
Q 012627 257 APVIF-QSLGFGSGAALYSSV-ITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGI 334 (459)
Q Consensus 257 ~~~~~-~~~g~~~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (459)
.+.++ ++.|++..+.+.... ...++.+++.+++|+++||+++|+.+..+..+..+...+..... .. . ..
T Consensus 245 ~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~---~~-----~-~~ 315 (491)
T PRK11010 245 TTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLS---IT-----D-KN 315 (491)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---hc-----c-cc
Confidence 55555 568999999998874 55679999999999999999998866544443333332222111 00 0 11
Q ss_pred HHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 012627 335 GIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIM 414 (459)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (459)
.+.......+...+.+...... ..+..+..+++.+++..|+.+....++..+++.+.|.+.|..|+...+.+..++.+.
T Consensus 316 ~~~l~~~~~l~~~~~g~~~~~~-~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~ 394 (491)
T PRK11010 316 LYSMGAAVFFENLCGGMGTAAF-VALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVP 394 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 1222222222222222222222 445568888888999999999999999999999999999988888888777777777
Q ss_pred HHHHHHhcCCC
Q 012627 415 SAFIYFFLPET 425 (459)
Q Consensus 415 ~~~~~~~~~~~ 425 (459)
+.+.....+++
T Consensus 395 ~l~~~~~~~~~ 405 (491)
T PRK11010 395 GLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHhc
Confidence 77776666543
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-28 Score=228.63 Aligned_cols=344 Identities=15% Similarity=0.105 Sum_probs=224.2
Q ss_pred ccccccCchhHHHHHHHhHH-HHHHHHHHhhhhhcccccchhh-hHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhh
Q 012627 23 TDYCKYDNQVLTLFTSSLYF-AGLVSTFGASYVTRSRGRRASI-MVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGF 100 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 100 (459)
.+++|.|.+++|++.+...+ ++.++.+++|+ +||+||||.+ ..+.++.+++..+.+++++++.+++.+.+.|...+.
T Consensus 43 ~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 121 (393)
T PRK15011 43 TDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGST 121 (393)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45667788888999876655 55566655566 9999999875 566677778888888999999887776655555566
Q ss_pred hcchhhHHHHhcCCCccc--hhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hcccCCChh
Q 012627 101 GNQAVPLYLSEMAPAKIR--GAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPN 177 (459)
Q Consensus 101 ~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p~ 177 (459)
..|...+++.|+.++++| +...++.+.+.++|.++||+++... .+..|||..|++.++..++..+. ++++||.++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l--~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~ 199 (393)
T PRK15011 122 ANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYAL--AMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRK 199 (393)
T ss_pred hHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHH--HHhcChHHHHHHHHHHHHHHHHHHHhhcCccCC
Confidence 788888888898876655 3455788999999999999995544 33468999999998877766554 455787652
Q ss_pred hHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhH
Q 012627 178 SLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYA 257 (459)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (459)
. +++ ++ .+ .+ ...+++ +..... . ...............+.
T Consensus 200 ~---~~~-~~-------------------------~~----~~---~~~~~~--~~~~~~-~-~~~~~~~~~~~~~~~~~ 239 (393)
T PRK15011 200 E---LPL-AT-------------------------GT----LE---APRRNR--RDTLLL-F-VICTLMWGTNSLYIINM 239 (393)
T ss_pred C---Ccc-cc-------------------------cc----cc---cccccc--ccHHHH-H-HHHHHHHHHHHHHHHHH
Confidence 1 000 00 00 00 000111 111111 1 11122222334455678
Q ss_pred HHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHH
Q 012627 258 PVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGI 336 (459)
Q Consensus 258 ~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (459)
|.++++ +|+++.+.+.......+..+++.++.|+++||++||+.+..+.....+........ +..+
T Consensus 240 p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 306 (393)
T PRK15011 240 PLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA-------------HSPA 306 (393)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-------------hhHH
Confidence 888754 89998888888777778888899999999999999986654433333222211110 1112
Q ss_pred HHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 012627 337 FLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSA 416 (459)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (459)
..+....+.....+...+. ...+..|..|+ .++++.++.+...++|..+++.+.|.+.+..++...+....++.+++.
T Consensus 307 ~~l~~~~l~~~~~g~~~~~-~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~ 384 (393)
T PRK15011 307 ILLGLQLLNAIYIGILGGI-GMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATL 384 (393)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 2222222222222222211 12344688885 589999999898999999999999999998887777777777777777
Q ss_pred HHHHhcCC
Q 012627 417 FIYFFLPE 424 (459)
Q Consensus 417 ~~~~~~~~ 424 (459)
+.++..||
T Consensus 385 ~~~~~~~~ 392 (393)
T PRK15011 385 FCLLRIKD 392 (393)
T ss_pred HHHHhhcC
Confidence 77666654
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=231.74 Aligned_cols=340 Identities=13% Similarity=0.140 Sum_probs=232.2
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHH---HhhhhHHHHHHHHHHhhhhhh
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILN---ACAVHISMLLLGRIFLGMGIG 99 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g 99 (459)
++++|+|+.+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++++++ .++++++.++++|+++|+|.|
T Consensus 53 ~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g 132 (438)
T PRK10133 53 QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLG 132 (438)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999999999999999999999999999885 468899999999999999999
Q ss_pred hhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhcccccc------------------C------chhhHHH
Q 012627 100 FGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH------------------P------WGWRLSL 155 (459)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~------------------~------~gwr~~f 155 (459)
...+....++.|+.++++|.+.+++.+..+++|..+++.++....... . .+||++|
T Consensus 133 ~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f 212 (438)
T PRK10133 133 CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPY 212 (438)
T ss_pred HHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHH
Confidence 999999999999887777777899999999999999998854322000 0 2577777
Q ss_pred HhhHH-HHHHHHHH-hcccCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCc
Q 012627 156 GLATV-PATLMFVG-GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQ 233 (459)
Q Consensus 156 ~~~~~-~~~~~~~~-~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (459)
+.... ..++..+. ...+||.+. +++.++ +..+...+.+++++++..+.
T Consensus 213 ~~~~~v~~~~~~~~~~~~~p~~~~----~~~~~~--------------------------~~~~~~~~~~~ll~~~~~~~ 262 (438)
T PRK10133 213 MIIVAIVLLVALLIMLTKFPALQS----DNHSDA--------------------------KQGSFSASLSRLARIRHWRW 262 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCc----cccccc--------------------------cccchhhhHHHHHhCchHHH
Confidence 64443 33333222 233454321 000000 00000122345555554333
Q ss_pred hHHHHHHHhHHHhhcchhHHHHhHHHHH-HH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHH
Q 012627 234 LVIGALGIPAFQQLTGMNSILFYAPVIF-QS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMII 311 (459)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 311 (459)
..+ ..++..........|.+.++ ++ +|+++.+++.......++.++++++++++.||+++|+.+..+..+..+
T Consensus 263 ~~l-----~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~ 337 (438)
T PRK10133 263 AVL-----AQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMA 337 (438)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 221 12223333444455667664 54 799999999999999999999999999999999999887766555444
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHH
Q 012627 312 YMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQA 391 (459)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~ 391 (459)
.+.+.... +.. ..+....+.+++.+..+++. +....+..|++ .+++.++.. ....++.+++++
T Consensus 338 ~~~~~~~~-----------~~~---~~~~~~~l~glg~~~i~P~~-~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i 400 (438)
T PRK10133 338 LCLISAFA-----------GGH---VGLIALTLCSAFMSIQYPTI-FSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPV 400 (438)
T ss_pred HHHHHHHc-----------CCh---HHHHHHHHHHHHHHHHHHHH-HHHHHcccchh-hccchhHHh-HHhccchHHHHH
Confidence 43332221 111 12233445566666555444 55555776654 577777775 455788999999
Q ss_pred HHHHHhhhh-HHHHHHHHHHHHHH
Q 012627 392 FLAALCHLK-FGIFLVFGGLVVIM 414 (459)
Q Consensus 392 ~~~~~~~~~-~~~~~~~~~~~~~~ 414 (459)
.|.+.|..+ ....++...++.+.
T Consensus 401 ~G~l~~~~g~~~~~~~v~~~~~~~ 424 (438)
T PRK10133 401 MGFVSDAAGNIPTAELIPALCFAV 424 (438)
T ss_pred HHHHHHhccchHHHHHHHHHHHHH
Confidence 999988776 44444444444433
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=230.74 Aligned_cols=339 Identities=9% Similarity=0.038 Sum_probs=234.7
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
++++|.|..++|++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.++.+++++++.++++|++.|.+.+...
T Consensus 35 ~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 114 (395)
T PRK10054 35 SRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFS 114 (395)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hcccCCChhhHHh
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVE 181 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p~~~~~ 181 (459)
+...++..|.+|+++|++++++.....++|.+++|.++..... .+||..|++.++..++..+. .+++||+++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~---~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~--- 188 (395)
T PRK10054 115 TVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM---QSINLPFWLAAICSAFPLVFIQIWVQRSEKA--- 188 (395)
T ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCcHHHHHHHHHHHHHHHHHHHHhccccc---
Confidence 8899999999999999999999999999999999999665442 47999999888877766444 3446554310
Q ss_pred cCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHH
Q 012627 182 QGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF 261 (459)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (459)
+ +.++ ++ ..+.++.++++..+......+ +..........+.+.+.
T Consensus 189 ~-~~~~-------------------------~~----~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~~~ 233 (395)
T PRK10054 189 I-ATET-------------------------GS----VWSPSVLLQDKALLWFTCSGF-----LASFVSGAFASCISQYV 233 (395)
T ss_pred c-ccch-------------------------hh----hhhhhhhccCceehHHHHHHH-----HHHHHHHHhhhhHHHHH
Confidence 0 0000 00 001134445554433332211 11111222323444444
Q ss_pred H---HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHH
Q 012627 262 Q---SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFL 338 (459)
Q Consensus 262 ~---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (459)
. +.+.+....+.......+.........+++.||.++|+.+..+..+..++...+.... +..+..
T Consensus 234 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~ 301 (395)
T PRK10054 234 MVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG------------NSLLLW 301 (395)
T ss_pred HHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc------------hHHHHH
Confidence 2 3445555666777777777777778889999999999877666555555544443211 112223
Q ss_pred HHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 012627 339 VIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSA 416 (459)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (459)
.+....++.+.... .|.....+.+..|++.++++.+..+ ...+|..++|.+.|.+.|+.++...+...+.+...+.
T Consensus 302 ~~~~~~~~~g~~~~-~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~ 377 (395)
T PRK10054 302 GMSAAVFTVGEIIY-APGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAW 377 (395)
T ss_pred HHHHHHHHHHHHHH-HhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHH
Confidence 33344444443322 3344556678889999999988654 6778999999999999999887665555444444333
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=226.75 Aligned_cols=322 Identities=15% Similarity=0.115 Sum_probs=226.0
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+++|+|..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++..++.+.+ .+++++.+++.|++.|++.+...
T Consensus 27 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~ 105 (355)
T TIGR00896 27 RSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIIN 105 (355)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHh
Confidence 56788899999999999999999999999999999999999999999988888877 77899999999999999999988
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCChhhHHhc
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQ 182 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~~~~ 182 (459)
+....++.|++| ++|++++++...+.++|..+++.++.........+||+.|...++..++... .++|+.++.
T Consensus 106 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--~~~~~~~~~---- 178 (355)
T TIGR00896 106 VLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--AWIPQVRRR---- 178 (355)
T ss_pred ccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HHhhhhccc----
Confidence 888889999986 5799999999999999999999885444332223499999877665444322 234443210
Q ss_pred CCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHHH
Q 012627 183 GKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ 262 (459)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (459)
++.+ ++..+.+.++.++++..+... +........++....+.|.+++
T Consensus 179 ~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~lp~~~~ 225 (355)
T TIGR00896 179 VAAN----------------------------QTTTRLTPVRIWRSPLAWQVT-----VFFGLQSGLYYSLIGWLPAILI 225 (355)
T ss_pred cCCC----------------------------CCCCCCCCchhhcCHhHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 000011233444443322111 2233334445566778999998
Q ss_pred HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhC-CcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 012627 263 SLGFGSGAALYSSVITGIALCIAALISMAFVDKFG-RRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIV 341 (459)
Q Consensus 263 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (459)
+.|++..+.+.......++.++++++.+++.||++ ||+....+.....++.+++.... ....+. .
T Consensus 226 ~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~---~ 291 (355)
T TIGR00896 226 SHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP-----------MHGLWA---W 291 (355)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh-----------hhHHHH---H
Confidence 89999999999999999999999999999999995 45444444444444443333221 111111 2
Q ss_pred HHHHHHHHhhcccccceeeec-ccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012627 342 ICLFVLAYGRSWGPLGWLVPS-ELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 400 (459)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (459)
..+.+.+.+...+ ....... +..+++.++...++.+..++++..++|.+.|.+.|+.+
T Consensus 292 ~~l~g~~~g~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 292 ALVLGLGQGGAFP-LALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHhhhhHhH-HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2334444433332 2222223 33445667888999999999999999999999998775
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=229.00 Aligned_cols=326 Identities=15% Similarity=0.116 Sum_probs=216.5
Q ss_pred cccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhh-hHHHHHHHHHHhhhhhhh
Q 012627 22 ETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV-HISMLLLGRIFLGMGIGF 100 (459)
Q Consensus 22 ~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~ 100 (459)
.++++|+|+.+.+++.+.+.+++.++++++|+++||+|||+++..+.++..++.+++++++ +++.+++.|+++|++.+.
T Consensus 28 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 107 (366)
T TIGR00886 28 IKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS 107 (366)
T ss_pred HHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh
Confidence 3567888899999999999999999999999999999999999999999999999999999 999999999999998664
Q ss_pred hcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccc--------cCchhhHHH-HhhHHHHHHH-HHHhc
Q 012627 101 GNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKI--------HPWGWRLSL-GLATVPATLM-FVGGL 170 (459)
Q Consensus 101 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~--------~~~gwr~~f-~~~~~~~~~~-~~~~~ 170 (459)
.+....++.|++|+++|++++++.....++|..+++.++...... ...+||+.| +..++...+. .+...
T Consensus 108 -~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 186 (366)
T TIGR00886 108 -FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFF 186 (366)
T ss_pred -hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 566788999999999999999999977777777776664322211 134799999 4445444443 33345
Q ss_pred ccCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcch
Q 012627 171 FLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGM 250 (459)
Q Consensus 171 ~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (459)
+.+|+|+.. ++.++.. ..+..... +++...+..+.++++..+... +..+......
T Consensus 187 ~~~~~~~~~---~~~~~~~-------~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 241 (366)
T TIGR00886 187 VGADTPPGK---PATGKLS-------FKGARWSV----------GTGALGDQLKVFRDRHTWILA-----LLYSVTFGSF 241 (366)
T ss_pred hcccCCccc---ccchhcc-------cccccccc----------cchhHHHHHHHHhccchhhHH-----HHHHHHHHHH
Confidence 567765311 0000000 00000000 000001233444444332222 2223333344
Q ss_pred hHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCC
Q 012627 251 NSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKP 329 (459)
Q Consensus 251 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (459)
.....+.|.++++ +|+++.+++.......+..+++.++.+++.||+++|+....+......+..++....
T Consensus 242 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--------- 312 (366)
T TIGR00886 242 LGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGL--------- 312 (366)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcC---------
Confidence 5667778888865 799999999888889999999999999999999998877655544444433333221
Q ss_pred CCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHH
Q 012627 330 LPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLF 384 (459)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~ 384 (459)
.+....+.............+...+. .+....+..| +.+|++.|+.+..+++|
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 313 VSPLSLAVFIVLFVALFFFSGAGNGS-TFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred CCcchHHHHHHHHHHHHHHhccccch-hhhcchhhch-hhcccHHHHHHHhccCC
Confidence 00001222223333333344444433 3555567777 57899999988877654
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=224.40 Aligned_cols=325 Identities=15% Similarity=0.160 Sum_probs=227.3
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+++|.|+.+.+++.+.+.+++.++++++|+++||+|||+++..+.++..++.+++.++++++.+++.|++.|++.+...
T Consensus 35 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 114 (394)
T PRK11652 35 ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGG 114 (394)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHH-HhcccCCChhhHHh
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFV-GGLFLPETPNSLVE 181 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~-~~~~l~e~p~~~~~ 181 (459)
+....+..|++++++|+++.++...+..+|..++|.++... .+..|||+.|++.++..++..+ ..+++||+++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l--~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--- 189 (394)
T PRK11652 115 VMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLL--TTLFGWRACYLFLLLLGAGVTFSMARWMPETRPA--- 189 (394)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccChHHHHHHHHHHHHHHHHHHHHhCCccCcc---
Confidence 88888999999999999999999999999999999985443 3445899999998877665543 34557876521
Q ss_pred cCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHH
Q 012627 182 QGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF 261 (459)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (459)
+++.++ .+.++++.++++..+...... +...........+.+.++
T Consensus 190 ~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 234 (394)
T PRK11652 190 DARRTR------------------------------VLASYRTLLSNRRFNCYLLML-----IGTLAGIAVFEACSGVLM 234 (394)
T ss_pred ccchhH------------------------------HHHHHHHHHcChHHHHHHHHH-----HHHHHHHHHHHHhChHHH
Confidence 000000 011233444444333222211 122222333444556677
Q ss_pred HH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 012627 262 QS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVI 340 (459)
Q Consensus 262 ~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (459)
++ +|+++.+.++......++.+++..+.+++.||.+++. ........+........... .....+....
T Consensus 235 ~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 304 (394)
T PRK11652 235 GAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPGWF--------GVMNVWTLLV 304 (394)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh--------ccccHHHHHH
Confidence 66 8999888888888888888889999999999987322 22222222222211111100 0011233344
Q ss_pred HHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 012627 341 VICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL 399 (459)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 399 (459)
...+.+.+.+... +....+..|.+| +.++++.++.+....++..+++.+.+.+....
T Consensus 305 ~~~~~~~g~~~~~-~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 361 (394)
T PRK11652 305 PAALFFFGAGMLF-PLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTG 361 (394)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 4444555555444 333444567777 46899999999999999999999988876554
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=221.08 Aligned_cols=332 Identities=12% Similarity=0.055 Sum_probs=235.2
Q ss_pred ccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhh----hHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhh
Q 012627 25 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASI----MVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGF 100 (459)
Q Consensus 25 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 100 (459)
++|.|..++|++.+++.+...++++++|+++||+|||+.. ..+..+..+ ..+..+++++.+++.|+++|.+.+.
T Consensus 33 ~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~ 110 (382)
T TIGR00902 33 GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFFSA 110 (382)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHcc
Confidence 4688899999999999999999999999999999985433 222222222 2445678999999999999999998
Q ss_pred hcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCChhhHH
Q 012627 101 GNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLV 180 (459)
Q Consensus 101 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~~ 180 (459)
..|...++..++ +++|+++++......++|.+++|+++... .+..|||..|++.+...++..+.. .++|+++.
T Consensus 111 ~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l--~~~~g~~~~f~~~~~~~~~~~~~~-~~~~~~~~-- 183 (382)
T TIGR00902 111 GMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGL--IGMFDEQNILAILTAGLAFMLIGF-LIKPTIPP-- 183 (382)
T ss_pred chhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHH--HHHcChhHHHHHHHHHHHHHHHHH-HcCCCCCC--
Confidence 889988887765 46799999999999999999999985443 445689999988765533333323 33433210
Q ss_pred hcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHH
Q 012627 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVI 260 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (459)
+++.++ +++....+.++++|++..+... +..+...........+.|.+
T Consensus 184 -~~~~~~--------------------------~~~~~~~~~~~~l~~~~~~~~l-----~~~~l~~~~~~~~~~~~~~~ 231 (382)
T TIGR00902 184 -KDAIPE--------------------------DESQGDSAFIALLKNPMNLRFL-----AAVCLIQGAHAAYYGFSAIY 231 (382)
T ss_pred -Cccccc--------------------------cccccchhHHHHHcChHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 000000 0000012244555554433222 22333344556667788888
Q ss_pred HHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 012627 261 FQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVI 340 (459)
Q Consensus 261 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (459)
+++.|.++.+.+.......+..+++..+.+++.||+++|+.+..+.....+...+.... +..+..+.
T Consensus 232 l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~ 298 (382)
T TIGR00902 232 WQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI-------------EAFPLIFL 298 (382)
T ss_pred HHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH-------------hhHHHHHH
Confidence 88899999999999999999999999999999999999998887777777776655432 22344555
Q ss_pred HHHHHHHHHhhcccccceeeecccCCcccccccchHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 012627 341 VICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVV-CNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVV 412 (459)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (459)
...+.+..++...... ..++++. |++.+++++++++ ....++..+++.+.|.+.|+.+...++..+++..
T Consensus 299 ~q~l~g~~~~~~~~~~-~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~ 369 (382)
T TIGR00902 299 LQILHCGTFAVCHLAA-MRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAA 369 (382)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5666666666655443 5566677 8888999999876 4567899999999999999988755555544443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-27 Score=219.87 Aligned_cols=322 Identities=12% Similarity=0.104 Sum_probs=224.8
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHh---hhhHHHHHHHHHHhhhhhh
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC---AVHISMLLLGRIFLGMGIG 99 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~g 99 (459)
++++|.|..+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++.+++.. .++++.+++.|++.|+|.|
T Consensus 30 ~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g 109 (410)
T TIGR00885 30 QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLG 109 (410)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHH
Confidence 5677888999999999999999999999999999999999999999999999988654 4689999999999999999
Q ss_pred hhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccc------------------------cCchhhHHH
Q 012627 100 FGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKI------------------------HPWGWRLSL 155 (459)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~------------------------~~~gwr~~f 155 (459)
...+....++.+..|+++|++.+++.+...++|..++|.++...... +..+||++|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~f 189 (410)
T TIGR00885 110 FLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPY 189 (410)
T ss_pred HHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999886544221 113699999
Q ss_pred HhhHHHHHHHHHHhcc--cCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCc
Q 012627 156 GLATVPATLMFVGGLF--LPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQ 233 (459)
Q Consensus 156 ~~~~~~~~~~~~~~~~--l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (459)
++.+++.++..++..+ .||.++ ++ ++ +.+.+.+.++.++++..+.
T Consensus 190 l~~a~~~~~~~~~~~~~~~p~~~~-----~~-~~---------------------------~~~~~~~~~~~~~~~~~~~ 236 (410)
T TIGR00885 190 MIIGAVVLAVALLIMLTKMPALNH-----SD-AK---------------------------QISFSASLSRLARIRHYRE 236 (410)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCc-----cc-cc---------------------------cccchhhHHHHHhChhHHH
Confidence 9988877765444332 443211 00 00 0000112234444443322
Q ss_pred hHHHHHHHhHHHhhcchhHHHHhHHHHHHHc--CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHH
Q 012627 234 LVIGALGIPAFQQLTGMNSILFYAPVIFQSL--GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMII 311 (459)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 311 (459)
.. +..++..........+++.+.++. +.+................+|+++++++.||+++|+.+........+
T Consensus 237 ~~-----l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~ 311 (410)
T TIGR00885 237 GV-----IAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMA 311 (410)
T ss_pred HH-----HHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 12 223333444445567778787664 33333344455556678889999999999999999877665555554
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHH
Q 012627 312 YMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQA 391 (459)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~ 391 (459)
..++..... . ........+.+++.+..+ |..+....+..+++.+..+.++... .+|+.+.|++
T Consensus 312 ~~ll~~~~~------------~--~~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l 374 (410)
T TIGR00885 312 LCLGSIFAG------------G--HVGLYCLTLCSAFMSLMF-PTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPL 374 (410)
T ss_pred HHHHHHHcC------------C--hHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHH
Confidence 444443311 1 112334444455555556 4446666677777665445555443 4999999999
Q ss_pred HHHHHhhh
Q 012627 392 FLAALCHL 399 (459)
Q Consensus 392 ~~~~~~~~ 399 (459)
.|.+.|..
T Consensus 375 ~G~~~d~~ 382 (410)
T TIGR00885 375 QGFIIDMK 382 (410)
T ss_pred HHHHHHHh
Confidence 99999954
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-27 Score=218.70 Aligned_cols=353 Identities=11% Similarity=0.022 Sum_probs=228.1
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhccccc-chhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhh
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR-RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFG 101 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 101 (459)
.+++|++..++|++.+++.++..++++++|.++||+|| |+++.++.++.+++..+..+.++++.+.+.|++.|++.+..
T Consensus 30 ~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (418)
T TIGR00889 30 SKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPT 109 (418)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccH
Confidence 34567788889999999999999999999999999965 77888899999899988899999999999999999988777
Q ss_pred cchhhHHHH--------hcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccC
Q 012627 102 NQAVPLYLS--------EMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLP 173 (459)
Q Consensus 102 ~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~ 173 (459)
.+...++.. |......|.|.+| .+|.+++|.++... .....|+ +|++.++..++..++.+++|
T Consensus 110 ~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l--~~~~~~~-~f~~~~~~~~~~~~~~~~~~ 180 (418)
T TIGR00889 110 IALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLL--DIELSNI-QLYITAGSSALLGVFALTLP 180 (418)
T ss_pred HHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHh--cccchhH-HHHHHHHHHHHHHHHHhcCC
Confidence 776665532 2233334555555 35677777775433 1122355 45566665555555566788
Q ss_pred CChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHH
Q 012627 174 ETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSI 253 (459)
Q Consensus 174 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (459)
|+|+. +++.+. + ..+..+.+.++++|++..+...+..+ .........
T Consensus 181 e~~~~---~~~~~~--------------~-----------~~~~~~~~~~~~~k~~~~~~~~~~~~-----~~~~~~~~~ 227 (418)
T TIGR00889 181 DIPVA---KSTAKM--------------S-----------IKVMLGLDAFILFKNKRMAIFFFFSM-----LLGAPLQIT 227 (418)
T ss_pred CCCCC---cccccc--------------C-----------HHHHhhhhHHHHhcCCCeeeHHHHHH-----HHHhHHHHH
Confidence 87631 000000 0 00000112344555655443333222 222222334
Q ss_pred HHhHHHHHHHcCCCC--------CchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhc
Q 012627 254 LFYAPVIFQSLGFGS--------GAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFG 325 (459)
Q Consensus 254 ~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (459)
..+.+.++++.|.++ ...+.......+..+++.+..+++.||+|+|+.+..+..+..+...++....
T Consensus 228 ~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~----- 302 (418)
T TIGR00889 228 NIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD----- 302 (418)
T ss_pred HHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC-----
Confidence 456677777766554 4568888888999999999999999999999988777666655544433310
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHH-HHHHHHHHHHHHHHHHHHhhhh----
Q 012627 326 EGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVV-CNNLLFTALIAQAFLAALCHLK---- 400 (459)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~---- 400 (459)
......+...+...+.+.+.+... +....++.|.+|++.|+++.|+.+ ....++..++|.+.|.+.++.+
T Consensus 303 ----~~~~~~~~l~l~~~l~g~~~~~~~-~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~ 377 (418)
T TIGR00889 303 ----PEYFGYALLFLSMIVYGCAFDFFN-ISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGT 377 (418)
T ss_pred ----cchhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccC
Confidence 000112223333444444444332 333455689999999999999997 5678899999999999998743
Q ss_pred --HHHHH-HHHHHHHHHHHHHHHhcCCCCC
Q 012627 401 --FGIFL-VFGGLVVIMSAFIYFFLPETKQ 427 (459)
Q Consensus 401 --~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 427 (459)
+...+ ..+++..+.+++.+++.+|+++
T Consensus 378 ~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 378 FDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 45444 4444445555556666666543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=218.60 Aligned_cols=348 Identities=13% Similarity=0.087 Sum_probs=227.7
Q ss_pred cccCchhHHHHHHHhHHHHHHHHHHhhhhhccc-----ccch-hhhHHHHHHHHHHHHHHhh---hhHHHHHHHHHHhhh
Q 012627 26 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-----GRRA-SIMVGSVSFFIGAILNACA---VHISMLLLGRIFLGM 96 (459)
Q Consensus 26 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-----Grr~-~~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~ 96 (459)
-|+|.+++|++..+... .+..+++|+++||+ |||| ++..+.++.+++..+.++. ++++.+.+..++.++
T Consensus 29 ~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~ 106 (402)
T PRK11902 29 EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAF 106 (402)
T ss_pred cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 37889999999777776 68999999999999 8876 7888888888888887776 467888888888899
Q ss_pred hhhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCCh
Q 012627 97 GIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETP 176 (459)
Q Consensus 97 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p 176 (459)
+.+...++..+++.|++|+++|+++.++...+.++|.++++.++...... ..|||..|++.++..++..+..+++||++
T Consensus 107 ~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~-~~gw~~~f~i~a~~~l~~~l~~~~~~e~~ 185 (402)
T PRK11902 107 LSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR-VLGWGNTYLLMAGLMLAGALTTLWAPEPE 185 (402)
T ss_pred HHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999885433221 24899999998888776655556677765
Q ss_pred hhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHh
Q 012627 177 NSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFY 256 (459)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (459)
+.. ++.++. .++.+++++++++++..+....... +.. ..........
T Consensus 186 ~~~---~~~~~~--------------------------~~~~~~~~~~l~~~~~~~~~l~~~~-l~~---~~~~~~~~~~ 232 (402)
T PRK11902 186 VPA---RPPRSL--------------------------GEAVVGPLRDFFSRRGAWALLLLIV-LYK---LGDAFAGSLS 232 (402)
T ss_pred ccc---cccchh--------------------------HHHHHHHHHHHHhCcCHHHHHHHHH-HHH---hHHHHHHHHH
Confidence 310 000000 0001223456666665444333222 111 1111111223
Q ss_pred HHHHHHHcCCCCCchhHHHHHHH-HHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhH
Q 012627 257 APVIFQSLGFGSGAALYSSVITG-IALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIG 335 (459)
Q Consensus 257 ~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (459)
.+.+.+++|+++.+.++.....+ ++.+++.++++++.||+++|+.+..+.....+..+.+...... + ...
T Consensus 233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~--------~-~~~ 303 (402)
T PRK11902 233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT--------P-KHL 303 (402)
T ss_pred HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc--------C-CcH
Confidence 34445668999888888876554 4688999999999999999887655544443333322221100 0 111
Q ss_pred HHHHHHHH----HHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 012627 336 IFLVIVIC----LFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLV 411 (459)
Q Consensus 336 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (459)
+....... ..+...+ ...+....++++.+|.+. .+..+....++...++.+.|.+.|..|+...+...+++
T Consensus 304 ~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~ 378 (402)
T PRK11902 304 WTMALAIGIENLCGGMGTA-AFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVI 378 (402)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 22222221 2222222 222333445566666554 45555566677777778899999999988777777776
Q ss_pred HHHHHHHHHhcC
Q 012627 412 VIMSAFIYFFLP 423 (459)
Q Consensus 412 ~~~~~~~~~~~~ 423 (459)
.+.+.++....+
T Consensus 379 ~~~~~~~~~~~~ 390 (402)
T PRK11902 379 ALPGLALLWLMR 390 (402)
T ss_pred HHHHHHHHHHHh
Confidence 666655554443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=218.86 Aligned_cols=347 Identities=14% Similarity=0.078 Sum_probs=209.3
Q ss_pred cccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHH---hhh-----hHHHHHHHHHHhh
Q 012627 24 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA---CAV-----HISMLLLGRIFLG 95 (459)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~~~-----~~~~l~~~r~l~G 95 (459)
+++|+|..+.|++.+.+.+++.++++++|+++||+|||+++.++..+.+++..... .++ ......+.+++.|
T Consensus 39 ~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (420)
T PRK09528 39 DINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLG 118 (420)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34677888889999999999999999999999999999999887766655543221 111 1111223334444
Q ss_pred hhhhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhccc-CC
Q 012627 96 MGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL-PE 174 (459)
Q Consensus 96 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l-~e 174 (459)
.+.....+....+..+ . ++++++.++......++|..++|.++..... .+|++.|++.++++++..++.+++ +|
T Consensus 119 ~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~ 193 (420)
T PRK09528 119 FGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN---INPQINFWLGSGSALILLVLLFFAKPD 193 (420)
T ss_pred hhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh---cCchHhHHHHHHHHHHHHHHHhccccc
Confidence 3333333333333322 2 3457788889999999999999999655443 379999999888877766655554 34
Q ss_pred ChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHH
Q 012627 175 TPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSIL 254 (459)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (459)
.++....+ ++.+ + ++++...++.++.++++..+...+... .....+....
T Consensus 194 ~~~~~~~~---~~~~---------------------~-~~~~~~~~~~~~~l~~~~~~~l~l~~~-----~~~~~~~~~~ 243 (420)
T PRK09528 194 APSTAKVA---NALG---------------------A-NASAVSLKDALALLKLPKFWFLVLYVI-----GVACFYDVFD 243 (420)
T ss_pred ccchhhhc---cchh---------------------c-ccccccHHHHHHHccCCCeEeehHHHH-----HHHHHHHHHH
Confidence 33210000 0000 0 000000111234555555444332221 1111222233
Q ss_pred HhHHHHHHH----cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 012627 255 FYAPVIFQS----LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPL 330 (459)
Q Consensus 255 ~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (459)
.+.|.++.+ .+.+..+.+.......+...++.++.|++.||+++|+.+..+..+..+...+..+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~----------- 312 (420)
T PRK09528 244 QQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA----------- 312 (420)
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-----------
Confidence 344555433 35555667888888888899999999999999999998776666555555444332
Q ss_pred CchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 012627 331 PKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSV-VVCNNLLFTALIAQAFLAALCHLKFGIFLVFGG 409 (459)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (459)
...+..+....+.+....... +....+..|.+|++.+++..+. .+....++.++++.+.|.+.|..|+...+...+
T Consensus 313 --~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~ 389 (420)
T PRK09528 313 --TGPLEVSILKLLHAFEVPFLL-VGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILG 389 (420)
T ss_pred --ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHH
Confidence 112223333333333333222 2223455788899988888765 567788999999999999999888776665544
Q ss_pred HHHHHHHHHH
Q 012627 410 LVVIMSAFIY 419 (459)
Q Consensus 410 ~~~~~~~~~~ 419 (459)
++.++..+..
T Consensus 390 ~~~~i~~~~~ 399 (420)
T PRK09528 390 GIVLLFTLIS 399 (420)
T ss_pred HHHHHHHHHH
Confidence 4444433333
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=215.30 Aligned_cols=336 Identities=12% Similarity=0.070 Sum_probs=225.3
Q ss_pred cccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccc----hhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhh
Q 012627 24 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRR----ASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIG 99 (459)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 99 (459)
+++|.|..++|++.+++.++..++++++|++.||+||| +.+.++..+. .......++++|.+++.|++.|++.+
T Consensus 32 ~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~ 109 (382)
T PRK11128 32 KGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFS 109 (382)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHc
Confidence 34678899999999999999999999999999999994 3333222222 22334446889999999999999999
Q ss_pred hhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCChhhH
Q 012627 100 FGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSL 179 (459)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~ 179 (459)
...|...+++.++ +++|+++++......++|.++||+++... .+..|||..|++.++..++..+..++.||.++
T Consensus 110 ~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l--~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~-- 183 (382)
T PRK11128 110 PLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKL--VSWFGEQAILWILTAGVASMLLGQLLRPTIMP-- 183 (382)
T ss_pred ccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHH--HHHcChhHHHHHHHHHHHHHHHHHHccCCCCC--
Confidence 9999888888877 45688889999999999999999995443 44468999998887655544444444555321
Q ss_pred HhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHH
Q 012627 180 VEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPV 259 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (459)
+++.++ ..++...+++++++++..+..... .+...........+.|.
T Consensus 184 --~~~~~~--------------------------~~~~~~~~~~~i~~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~ 230 (382)
T PRK11128 184 --QGESRQ--------------------------QESAGWPAWKALLKEPTVWRFLLC-----VSLLQGSHAAYYGFSAI 230 (382)
T ss_pred --cccccc--------------------------ccccccchHHHHHcChhHHHHHHH-----HHHHHHHhHhHHHHHHH
Confidence 000000 000012345666666554333222 22222233445566677
Q ss_pred HHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 012627 260 IFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLV 339 (459)
Q Consensus 260 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (459)
+.++.|.++.+.+.......+..++..++.+++.||+++|+.+..+.....+..+..... +..+..+
T Consensus 231 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~ 297 (382)
T PRK11128 231 YWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST-------------TALPWLI 297 (382)
T ss_pred HHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-------------hhHHHHH
Confidence 888899998889999888889999999999999999999998776666655554443322 1234444
Q ss_pred HHHHHHHHHHhhcccccceeeecccCCcccccccchHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 012627 340 IVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVV-CNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSA 416 (459)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (459)
+...+.+++++...... ..+..+. +++.+++..+..+ ....++..+++.+.|.+.|..+...++. .+++.+.++
T Consensus 298 ~~~~l~g~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~-~~~~~~~~~ 372 (382)
T PRK11128 298 VIQILHCGTFTVCHLAA-MRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWV-MALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHH
Confidence 45555555555443333 3444555 4555688888776 3345677899999999999887654433 333334433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-26 Score=215.80 Aligned_cols=346 Identities=15% Similarity=0.114 Sum_probs=248.4
Q ss_pred cCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHhhhhhhhhc
Q 012627 28 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA-----VHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 28 ~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~ 102 (459)
-|+..++++.++..+...+.++++|.++||++||++++.+.++.++..+..++. .+.|.+++.-++.|++.+...
T Consensus 42 ~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~ 121 (524)
T PF05977_consen 42 GSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFN 121 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHH
Confidence 457788999999999999999999999999999999999988887666554432 478899999999999999999
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCChhhHHhc
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQ 182 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~~~~ 182 (459)
|+..+++.|..|+++...+.++.+...++..++||.+++.... ..|-.+.|.+.++..++.+......++.++. ++
T Consensus 122 PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva--~~G~~~~f~inalsfl~~i~~l~~~~~~~~~--~~ 197 (524)
T PF05977_consen 122 PAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVA--FFGAAAAFLINALSFLISILALLRWKPPPPP--SS 197 (524)
T ss_pred HHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHccccccc--cc
Confidence 9999999999999999999999999999999999999655443 3467788888887666554443333322110 00
Q ss_pred CCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHHH
Q 012627 183 GKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ 262 (459)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (459)
...+ ...++.+..++-+.+++..+..+. ..+............+|.+.+
T Consensus 198 ~~~e--------------------------~~~~~l~~G~ryv~~~~~l~~~l~-----~~~~~~l~~~a~~aLlPl~a~ 246 (524)
T PF05977_consen 198 LPRE--------------------------RFFSALREGLRYVRSSPPLRSVLL-----RSFLFNLFASAVWALLPLFAR 246 (524)
T ss_pred cchh--------------------------hhhhhHHHHHHHHhcchHHHHHHH-----HHHHHHHhhhHHHHhhhHHHH
Confidence 0000 000111222333333333222221 111122222334456788876
Q ss_pred H-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 012627 263 S-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIV 341 (459)
Q Consensus 263 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (459)
+ +|.++...|++.+..+++.++|.++.+++.+|+++++.+..+.+..+++.+.+++. ...+.....
T Consensus 247 ~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~-------------~~~~~~~~~ 313 (524)
T PF05977_consen 247 DVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS-------------PSFWLALIA 313 (524)
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc-------------hHHHHHHHH
Confidence 5 89999999999999999999999999999999998887776666666555554443 223444555
Q ss_pred HHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 012627 342 ICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFF 421 (459)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (459)
.++.+++......+. .+..++..|++.||+++++..+....+..++..+.|.+.+..+....+..++++.+++.++...
T Consensus 314 l~l~G~~~~~~~~~~-~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~ 392 (524)
T PF05977_consen 314 LFLAGAAWIIANSSL-NTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALR 392 (524)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 555566655544444 4556899999999999999999999999999999999999988776666666655555554443
Q ss_pred c
Q 012627 422 L 422 (459)
Q Consensus 422 ~ 422 (459)
.
T Consensus 393 ~ 393 (524)
T PF05977_consen 393 F 393 (524)
T ss_pred h
Confidence 3
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=213.20 Aligned_cols=323 Identities=13% Similarity=0.094 Sum_probs=216.2
Q ss_pred cccccCchhHHHHHHHhHHHHHHHHHHhhhhhccc-----ccchh-hhHHHHHHHHHHHHHHhh---hhHHHHHHHHHHh
Q 012627 24 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-----GRRAS-IMVGSVSFFIGAILNACA---VHISMLLLGRIFL 94 (459)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-----Grr~~-~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~ 94 (459)
+++|+|.+++|+..+. .+...+ .+++|+++||+ ||||. ++.+.++.+++....++. .+.+.+....++.
T Consensus 16 ~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~ 93 (356)
T TIGR00901 16 RSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLI 93 (356)
T ss_pred HHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH
Confidence 3457788888999766 455555 99999999998 89886 567788888887777776 5667788888889
Q ss_pred hhhhhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhcccccc------CchhhHHHHhhHHHHHHHHHH
Q 012627 95 GMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH------PWGWRLSLGLATVPATLMFVG 168 (459)
Q Consensus 95 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~------~~gwr~~f~~~~~~~~~~~~~ 168 (459)
+++.+...++..+++.|++|+++|+++.++...+.++|.++++.++....... .++||..|++.++..++..+.
T Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~ 173 (356)
T TIGR00901 94 AFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLV 173 (356)
T ss_pred HHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999854333221 123999999999887776555
Q ss_pred hcc-cCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhh
Q 012627 169 GLF-LPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQL 247 (459)
Q Consensus 169 ~~~-l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (459)
.++ .||+++. +++.++ + .++.+.+++++++++..+....... ..+...
T Consensus 174 ~~~~~~e~~~~---~~~~~~-------------------~-------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 222 (356)
T TIGR00901 174 TLFLAKEPQED---ASVPKP-------------------L-------TQAVLKPIREFFQRKNMIQALLLLL--LIVLYK 222 (356)
T ss_pred HHHhccCCCcc---cccchh-------------------H-------HHHHHHHHHHHHHhcCchHHHHHHH--HHHHHH
Confidence 443 5664321 000000 0 0001223455555554333332222 233334
Q ss_pred cchhHHHHhHHHHHHHcCCCCCchhHHHHHHH-HHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcC
Q 012627 248 TGMNSILFYAPVIFQSLGFGSGAALYSSVITG-IALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGE 326 (459)
Q Consensus 248 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (459)
...+....+.|.++++.|+++.+.+......+ +..+++.++++++.||+|+|+.+..+..+..+...+...........
T Consensus 223 ~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 302 (356)
T TIGR00901 223 LGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHD 302 (356)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 45566777888888889999988888777665 57789999999999999998887766655555444333221000000
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHH
Q 012627 327 GKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNL 382 (459)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 382 (459)
+ .+....+.......+..++.+.... ....+..|.+|++.||+.+|+.+...+
T Consensus 303 ~--~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 303 G--ITFPHLLMLFLTITLEAVTGGLGTV-AFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred c--cccchHHHHHHHHHHHHHHhHHHHH-HHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 0 0001223333344444444444443 336666899999999999999876653
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-27 Score=203.77 Aligned_cols=356 Identities=15% Similarity=0.114 Sum_probs=221.0
Q ss_pred HHhhhhccCccccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 012627 12 VYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGR 91 (459)
Q Consensus 12 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 91 (459)
..+..|++....+..+.+....|.+.+.+.++..+.++.||.++||+|||+++.+|++..++...+.+.+.|+..+.+.|
T Consensus 49 ~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR 128 (451)
T KOG2615|consen 49 VFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLAR 128 (451)
T ss_pred HHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666555555556788889999999999999999999999999999999999999999999999999997788889
Q ss_pred HHhhhhhhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhcccccc-Cch---hhHHHHhhHHHHHH-HH
Q 012627 92 IFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH-PWG---WRLSLGLATVPATL-MF 166 (459)
Q Consensus 92 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~-~~g---wr~~f~~~~~~~~~-~~ 166 (459)
++.|+..| ...+..++++|.+++|+|+++++.+..+.++|.++||.+|+...... ..| .-.+-++..+.... ..
T Consensus 129 ~l~Gi~kg-nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~ 207 (451)
T KOG2615|consen 129 FLGGIFKG-NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVT 207 (451)
T ss_pred HhhhhccC-chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHH
Confidence 99999988 55778899999999999999999999999999999999976665511 111 11222223333333 23
Q ss_pred HHhcccCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCc--hHHHHHHHhHH
Q 012627 167 VGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQ--LVIGALGIPAF 244 (459)
Q Consensus 167 ~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 244 (459)
+..+++||+-+. +++.++..+. .+..++.. +..+..+.......+++.... .....+.+..+
T Consensus 208 ~~~~~lpETL~~---rk~~~~~~~~----------~~~~~~~~---~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ 271 (451)
T KOG2615|consen 208 FFPWFLPETLPL---RKRNDEHSTL----------QEAADDRL---ALLKFARIFKVAALRNPPLLDFISVLRIFGLHYF 271 (451)
T ss_pred HHHHhCCccccc---hhhcccccch----------hhhhhhhh---hhcchhhhhhhhhhcCccccchHHHHHHHHHHHH
Confidence 445778998321 1111110000 00000000 000000000011122222222 11222223333
Q ss_pred HhhcchhHHHHhHHHHH-HHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhC--CcceeehhhHHHHHHHHHHHHHHH
Q 012627 245 QQLTGMNSILFYAPVIF-QSLGFGSGAALYSSVITGIALCIAALISMAFVDKFG--RRAFFLEAGTEMIIYMVIVAITLA 321 (459)
Q Consensus 245 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~~~ 321 (459)
.+...+....++.+.+. +.+|+++.+.|.+....++...+.+....+..+|.+ .+-.+.... ..+......
T Consensus 272 ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l------~~~vP~~ll 345 (451)
T KOG2615|consen 272 LYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSL------LLIVPAFLL 345 (451)
T ss_pred HHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHH------HHHHHHHHH
Confidence 33333333334444443 348999999999988888887777766666555544 111111111 111111111
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012627 322 LEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCH 398 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 398 (459)
.... .....+.....+..+......+.+ ..+.....|+++||+.+|+..+.+.++-+++|.+.|.+...
T Consensus 346 ls~~-------~~~~~l~~~s~l~sf~~A~~vt~L-t~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 346 LSLA-------RTPVVLYLGSTLKSFSTASVVTCL-TSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred Hhcc-------ccchhhhHHHHHHHHHHHHhhHHH-HHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence 1110 111233334444444444444444 55557888999999999999999999999999999887653
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-26 Score=241.62 Aligned_cols=324 Identities=11% Similarity=0.007 Sum_probs=222.2
Q ss_pred chhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHH---hhhhHHHHHHHHHHhhhhhhhhcchhh
Q 012627 30 NQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA---CAVHISMLLLGRIFLGMGIGFGNQAVP 106 (459)
Q Consensus 30 ~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~~ 106 (459)
....+++.+++.+++.++++++|+++||+|||++++.+.++..++.++.. .+++++.++++|+++|++.+...++..
T Consensus 46 ~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 125 (1146)
T PRK08633 46 VILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKY 125 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHH
Confidence 45579999999999999999999999999999999998877666655543 457899999999999999999999999
Q ss_pred HHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhcccccc-------CchhhHHHHhhHHHH-HHHHHHhcccCCChhh
Q 012627 107 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH-------PWGWRLSLGLATVPA-TLMFVGGLFLPETPNS 178 (459)
Q Consensus 107 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~-------~~gwr~~f~~~~~~~-~~~~~~~~~l~e~p~~ 178 (459)
+++.|++|+++|++++++...+.++|.++|+.++....... ..+|++.+.+..+.. ++.+++.+.+||+|+.
T Consensus 126 ~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1146)
T PRK08633 126 GIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAA 205 (1146)
T ss_pred hhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCC
Confidence 99999999999999999999999999999999976554330 123444444443333 3334445567887643
Q ss_pred HHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHH
Q 012627 179 LVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAP 258 (459)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (459)
...+.+.++ . ...+.....++.+++++..+...+ ..+...........+.|
T Consensus 206 ~~~~~~~~~-~-----------------------~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 256 (1146)
T PRK08633 206 APEVFDKKK-Y-----------------------LFPKLLWRNLKLLRSDRVLWLAII-----GLSYFWFISQLAQANFP 256 (1146)
T ss_pred Ccccccccc-c-----------------------ccHHHHHHHHHHHhcCcHHHHHHH-----HHHHHHHHHHHHHHhhH
Confidence 111100000 0 000001122344444443222221 22222223344556677
Q ss_pred HHHHH-cCCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHH
Q 012627 259 VIFQS-LGFGSG-AALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGI 336 (459)
Q Consensus 259 ~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (459)
.++++ +|++.. ..+++.....++.+++.++.+++.||+++++.+..+.++.+++.+++.... ..+
T Consensus 257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~ 323 (1146)
T PRK08633 257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP-------------SLA 323 (1146)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh-------------hHH
Confidence 77754 899988 889999999999999999999999999988877766655555544443321 123
Q ss_pred HHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHH
Q 012627 337 FLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAAL 396 (459)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (459)
..++..++++++.+....+. ..++.+..|++.||+++|+.+.+..++..+++.+.+.+.
T Consensus 324 ~~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 324 SVLVLFFLFGFSAGLFIVPL-NALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred HHHHHHHHHHHHHHHhhHHH-HHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555544444333 556678899999999999999999988877766655543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-26 Score=240.13 Aligned_cols=334 Identities=13% Similarity=0.054 Sum_probs=226.7
Q ss_pred hhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhH---HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcchhhH
Q 012627 31 QVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMV---GSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPL 107 (459)
Q Consensus 31 ~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 107 (459)
...++..+++.+.+.++++++|+++||+|||+++.. +.++..+..+.+...++++.++++|+++|++.+...|+..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 457889999999999999999999999999997633 22333333333344589999999999999999999999999
Q ss_pred HHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCChhhHHhcCCHHH
Q 012627 108 YLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDE 187 (459)
Q Consensus 108 ~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~~~~~~~~~ 187 (459)
++.|++++++|++++++.+++.++|.++||++++.... ..+|++.|+..++..++.+++.+++|+++.. .++...+
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 207 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI--SGNFVILVALLMGIAVLGWLASLFIPKTGNA--APDLKID 207 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCCeec
Confidence 99999999999999999999999999999999655543 4589999966556556556666667765421 0000000
Q ss_pred HHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHHHH-cCC
Q 012627 188 ARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGF 266 (459)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~ 266 (459)
. + ..++....++.+.+++..+... +..+...........+.|.++++ +|.
T Consensus 208 ~-----------------~-------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~~~~g~ 258 (1140)
T PRK06814 208 R-----------------N-------IIRSTITLLKYAKADKRIWLAI-----LGISWFWLVGAVVLSQLPLLAKETLGG 258 (1140)
T ss_pred c-----------------c-------hHHHHHHHHHHHhcCchHHHHH-----HHHHHHHHHHHHHHHHhHHHHHHHcCC
Confidence 0 0 0000111244444444433322 22222333344566678888876 799
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCC-------CCCchhHHHHH
Q 012627 267 GSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGK-------PLPKGIGIFLV 339 (459)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 339 (459)
++...+++.+..+++.+++.++.+++.|+..+++.+..+..+..+..+.+.+.......... .......+...
T Consensus 259 ~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1140)
T PRK06814 259 DENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRIL 338 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHH
Confidence 99999999999999999999999999988777766655554444433322221000000000 00001123334
Q ss_pred HHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012627 340 IVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCH 398 (459)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 398 (459)
+..++++++.+....+. .+++.+..|++.+|+++|+.+....++..+++.+.+.+.+.
T Consensus 339 ~~~~~~g~~~~~~~~~~-~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~ 396 (1140)
T PRK06814 339 IDLFGLAAAGGLYIVPL-FAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQAL 396 (1140)
T ss_pred HHHHHHHHHHHHhHHHH-HHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555544444443 56668999999999999999999999999999999988743
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=225.28 Aligned_cols=378 Identities=20% Similarity=0.217 Sum_probs=267.6
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHH-HHhhhhhhhh
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGR-IFLGMGIGFG 101 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r-~l~G~~~g~~ 101 (459)
.++++.+..+++|+.++....+.+..++.+.+.||+|.|++.+.|.++..++.++.++++++|++++.- ++.|+|.|..
T Consensus 73 ~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~ 152 (509)
T KOG2504|consen 73 MDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLI 152 (509)
T ss_pred HHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhh
Confidence 567788888899999999999999999999999999999999999999999999999999999998887 8999999999
Q ss_pred cchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhccc-CCChhhHH
Q 012627 102 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL-PETPNSLV 180 (459)
Q Consensus 102 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l-~e~p~~~~ 180 (459)
+.+...++..||++| |+.+.|+...+.++|.++-|.+ .-...+..|||+.+++.+.+.+-.++....+ |.+++...
T Consensus 153 ~~paiviv~~YF~kk-R~lA~Gia~~GsG~G~~~~~~l--~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~ 229 (509)
T KOG2504|consen 153 YLPAVVILGTYFEKK-RALATGIAVSGTGVGTVVFPPL--LKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKP 229 (509)
T ss_pred hcchhhhhhhHhHHH-HHHHHhhhhccCCcceeeHHHH--HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCc
Confidence 999999999888655 9999999999999999999988 4555566789999999988887665554443 32332111
Q ss_pred hcCCHHHHHHHHH------------HHcCCCcch-----HHHHHHHHHHHHHh--hhcCch----hHHhhhcCCCchHHH
Q 012627 181 EQGKLDEARKVLE------------KVRGTANVD-----AEFSDLIDASNAAR--AIKNPF----RNLFKKKNRPQLVIG 237 (459)
Q Consensus 181 ~~~~~~~~~~~~~------------~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~ 237 (459)
. .++..+... +....+... .+.....+.+++.+ ..+... .++++++. .+
T Consensus 230 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~-----fl 301 (509)
T KOG2504|consen 230 N---EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPK-----FL 301 (509)
T ss_pred h---hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCch-----HH
Confidence 1 000000000 000000000 00001111111000 111111 24444422 33
Q ss_pred HHHHhHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHH
Q 012627 238 ALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVA 317 (459)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 317 (459)
.+.+...+...++.....++|.+.+..+++..++.....+.++..++++++.|++.|+...++.......+...++..+.
T Consensus 302 ~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~ 381 (509)
T KOG2504|consen 302 LLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLF 381 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHH
Confidence 33356667777888888999999999999999999999999999999999999999998854443333322222222221
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 012627 318 ITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALC 397 (459)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 397 (459)
... ....+.++....+++++.+ .+..+....+.|+.+.+.-..+.|+...+..++..++|++.|.+.|
T Consensus 382 ~p~-----------~~~~~~l~~~~~~fG~~~g-~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d 449 (509)
T KOG2504|consen 382 LPF-----------ATTYVGLIVFSILFGFCVG-SFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYD 449 (509)
T ss_pred HHH-----------hccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeee
Confidence 111 0112344444444555444 3334444456799999999999999999999999999999999988
Q ss_pred hhh-HHHHHHHHHHHHHHHHHHHHhcC
Q 012627 398 HLK-FGIFLVFGGLVVIMSAFIYFFLP 423 (459)
Q Consensus 398 ~~~-~~~~~~~~~~~~~~~~~~~~~~~ 423 (459)
..+ |...+.+.+++.+.+.+.++..+
T Consensus 450 ~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 450 ITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred ccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 877 77777788888888877777666
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.7e-26 Score=215.68 Aligned_cols=330 Identities=16% Similarity=0.121 Sum_probs=218.5
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcc----cccc-hhhhHHHHHHHHHHHHHHhhhh------HHHHHHHH
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRS----RGRR-ASIMVGSVSFFIGAILNACAVH------ISMLLLGR 91 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr----~Grr-~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r 91 (459)
.+.+|+++.++|++.++..+..++..|+.|+++|| +||| +.++.+....+++.+++...++ .+.+++.+
T Consensus 27 ~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 106 (437)
T TIGR00792 27 TDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITY 106 (437)
T ss_pred HHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence 34567788999999999999999999999999997 6774 4677888888888888776653 46778888
Q ss_pred HHhhhhhhhhcchhhHHHHhcC-CCccchhHHHHHHHHHHHHHHHHHHHHhccc-----cccCchhhHHHHhhHHHHHHH
Q 012627 92 IFLGMGIGFGNQAVPLYLSEMA-PAKIRGAVNQLFQLTTCLGILVANLINYGTE-----KIHPWGWRLSLGLATVPATLM 165 (459)
Q Consensus 92 ~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~-----~~~~~gwr~~f~~~~~~~~~~ 165 (459)
++.+++.+...++..++..|.. +++||++..++...+..+|..+++.+..... ..+..+||+.+.+.++++++.
T Consensus 107 ~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~ 186 (437)
T TIGR00792 107 ILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVS 186 (437)
T ss_pred HHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHH
Confidence 9999999988888888999988 4688999999999988888777655432221 123468999999999888777
Q ss_pred HHH-hcccCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHH
Q 012627 166 FVG-GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAF 244 (459)
Q Consensus 166 ~~~-~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (459)
.+. .+.+||.++. .+.++ +++.+.++.++.+++++..+... +..+
T Consensus 187 ~~~~~~~~~e~~~~----~~~~~-------------------------~~~~~~~~~~~~l~~~~~~~~~~-----~~~~ 232 (437)
T TIGR00792 187 LIICFFGTKERYSE----IPKNI-------------------------EKKLSLKQIFKALFKNDQLLILC-----LAYL 232 (437)
T ss_pred HHHHHcCCEecCCC----CCccc-------------------------ccCCCHHHHHHHHhCCHHHHHHH-----HHHH
Confidence 554 4557776421 00000 00000111234444444332222 2222
Q ss_pred HhhcchhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHH
Q 012627 245 QQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALE 323 (459)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (459)
...........+.+++.+. .+ ++...+.......++.+++.++.+++.||+|+|+....+..+..++.+......
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--- 308 (437)
T TIGR00792 233 FYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG--- 308 (437)
T ss_pred HHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc---
Confidence 2223333333344555443 34 345566666777899999999999999999999988776665555544433210
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCC-------cccccccchHHHHHHHHHHHHHHHHHHHHH
Q 012627 324 FGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFP-------LEMRSAGQSVVVCNNLLFTALIAQAFLAAL 396 (459)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (459)
+..+...+...+.+++.+... +..+.+.+|..+ ++.+|...|+.+....++..+++.+.+.+.
T Consensus 309 ---------~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll 378 (437)
T TIGR00792 309 ---------SNLPLILVLIILAGFGQNFVT-GLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLIL 378 (437)
T ss_pred ---------hhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112223333334444444333 333445556654 455789999999999999999999999998
Q ss_pred hhhh
Q 012627 397 CHLK 400 (459)
Q Consensus 397 ~~~~ 400 (459)
+..|
T Consensus 379 ~~~G 382 (437)
T TIGR00792 379 GIIG 382 (437)
T ss_pred HHcC
Confidence 7654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-27 Score=202.71 Aligned_cols=336 Identities=13% Similarity=0.046 Sum_probs=239.5
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
+...+-+++++|++.+...+.+.+..++.|.+.||+|+|..+++|++++..+++++++.++++.++++|.+||+|.++.+
T Consensus 98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence 45566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhcCCCc-cchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhccc-CCChhhHH
Q 012627 103 QAVPLYLSEMAPAK-IRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL-PETPNSLV 180 (459)
Q Consensus 103 ~~~~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l-~e~p~~~~ 180 (459)
.+..++++|.+|++ +|++++|+.-.+.++|.++||++ +...++..|.+.+|++.++++++...+.+++ +.+..
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpf--GGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~--- 252 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPF--GGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM--- 252 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCc--ccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc---
Confidence 99999999999875 48999999999999999999999 5555566789999999999999987776664 33221
Q ss_pred hcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHH
Q 012627 181 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVI 260 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (459)
+ .++..+..+++++++++....... ............--.++.+
T Consensus 253 -~------------------------------~~~~~~~~~~~~Ll~dP~I~~~ag-----ai~~~n~~lafLePtlslw 296 (464)
T KOG3764|consen 253 -D------------------------------PDSTEQGTPMWSLLMDPYILLIAG-----AITFSNSSLAFLEPTLSLW 296 (464)
T ss_pred -C------------------------------ccccccCccHHHHHhCchHhhhhc-----chhhccchHHHhCcccHHH
Confidence 0 001122445677777665322211 1111122222222334454
Q ss_pred H-HHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeeh--hhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHH
Q 012627 261 F-QSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLE--AGTEMIIYMVIVAITLALEFGEGKPLPKGIGIF 337 (459)
Q Consensus 261 ~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (459)
+ ++...+..+.|+.+...++...++..+.|.+.||+++-+.+.. +.+....+.....+.. .....|.
T Consensus 297 m~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~----------~~~~L~v 366 (464)
T KOG3764|consen 297 MLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFAT----------SIAQLWV 366 (464)
T ss_pred HHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhh----------hHHHHhh
Confidence 4 4466555689999999999999999999999999994443332 2222222222222221 1111233
Q ss_pred HHHHHHHHHHHHhhcccccceeeecccCCcc---cccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 012627 338 LVIVICLFVLAYGRSWGPLGWLVPSELFPLE---MRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGL 410 (459)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (459)
.....++.+........|.....+ |.-..+ ..|...++......++.+++|.+.|.+.+..|+.+.....++
T Consensus 367 p~~~l~~~i~~~dasl~P~l~~lv-d~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~ 441 (464)
T KOG3764|consen 367 PNFGLGFGIGLADASLIPTLGYLV-DPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGI 441 (464)
T ss_pred hhHHHHHHHHHHHHHHhhhhHHhc-chhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHH
Confidence 333334444444444444423332 433333 568888999999999999999999999999987665444333
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=203.33 Aligned_cols=347 Identities=12% Similarity=0.083 Sum_probs=222.3
Q ss_pred ccccCchh-HHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcc
Q 012627 25 YCKYDNQV-LTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQ 103 (459)
Q Consensus 25 ~~~~s~~~-~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 103 (459)
++|+|..+ .|.+.++++.+|+++.++.|+++||+|.|+++..+.+.+++.+++.+++++++.+.+.|++.|+++|+.+
T Consensus 55 elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~- 133 (511)
T TIGR00806 55 VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI- 133 (511)
T ss_pred HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 55666666 7999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhh---HHHHHHHHHHhcccCCChhhHH
Q 012627 104 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLA---TVPATLMFVGGLFLPETPNSLV 180 (459)
Q Consensus 104 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~---~~~~~~~~~~~~~l~e~p~~~~ 180 (459)
+...++..|+|++||+++.++..++..+|.+++++++.. ...+|||+-+.+. .....+.+++.+++|..++.+.
T Consensus 134 A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql---l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~ 210 (511)
T TIGR00806 134 AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL---LVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLF 210 (511)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhh
Confidence 999999999999999999999999999999999999765 2345898765443 3333444556688886666554
Q ss_pred hcCCHHHHHHHHHHHcCCCcchH-HHHH-H-HHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhH
Q 012627 181 EQGKLDEARKVLEKVRGTANVDA-EFSD-L-IDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYA 257 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (459)
-+++.+.......+.....+.+. +..+ . ......-......+++..+++...... +.+.+...+++-+.+|.
T Consensus 211 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WS-----lWwa~a~~g~~qv~~Y~ 285 (511)
T TIGR00806 211 FNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWS-----LWWVFNSAGYYLITYYV 285 (511)
T ss_pred hccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhh-----HHHHHHhhHHHHHHHHH
Confidence 33322110000001111101000 0000 0 000011111223334444444433322 34455566677777777
Q ss_pred HHHHHHcCC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHH
Q 012627 258 PVIFQSLGF-GSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGI 336 (459)
Q Consensus 258 ~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (459)
..+-++..- .+...|..-++..+.+.+.++..|++-.++.+...+.++.....-+.+ ..... -..+.|
T Consensus 286 Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gl----l~~m~-------~t~~Iw 354 (511)
T TIGR00806 286 HTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGL----VFWMS-------QSHDIW 354 (511)
T ss_pred HHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHH----hhhhh-------cccchH
Confidence 766665433 223556677777777888888888875444222222222111111111 11111 123467
Q ss_pred HHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHH
Q 012627 337 FLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAF 392 (459)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~ 392 (459)
+..+...++...+.+..+....-+ +.....+.-|...|+++...-+...+...+.
T Consensus 355 ~~Y~~yvlf~~~y~flitia~~~i-A~~L~~~~~aLvFGiNtfvAl~LQtilT~iV 409 (511)
T TIGR00806 355 VLYVTYVLFRGIYQFLVPIATFQI-ASSLSKELCALVFGINTFVATALKTIITAVV 409 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccceEEEEecHHHHHHHHHHheEEEE
Confidence 777777777777776654443333 4445556668999998888777666655444
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-25 Score=207.24 Aligned_cols=343 Identities=13% Similarity=0.110 Sum_probs=218.1
Q ss_pred cccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHH---Hhh-----hhHHHHHHHHHHhh
Q 012627 24 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILN---ACA-----VHISMLLLGRIFLG 95 (459)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-----~~~~~l~~~r~l~G 95 (459)
+++|.++.+.|++.+++.+++.++++++|+++||+|||+.++.+....+++.... .+. +.++.+++.|++.|
T Consensus 31 ~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 110 (396)
T TIGR00882 31 DVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLG 110 (396)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3467778888999999999999999999999999999999988777666544332 112 23345677788999
Q ss_pred hhhhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcc-cCC
Q 012627 96 MGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF-LPE 174 (459)
Q Consensus 96 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-l~e 174 (459)
++.+...+....+..|.. +++++.++......++|.++||.+++.... .+||.+|++.+++.++..++.+. .||
T Consensus 111 ~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~ 185 (396)
T TIGR00882 111 FVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS---IDPQIVFWLGSGFALILMLLLMFAKPK 185 (396)
T ss_pred HHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc---cCchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 988888888887777753 334567788888889999999999654432 47999999998888877655444 444
Q ss_pred ChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHH
Q 012627 175 TPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSIL 254 (459)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (459)
+|+. + +.+++. .. ++++...++.++.++++..+.... ..+.....+....
T Consensus 186 ~~~~---~-~~~~~~-------~~--------------~~~~~~~~~~~~~l~~~~~~~~~l-----~~~~~~~~~~~~~ 235 (396)
T TIGR00882 186 APSS---A-TVANAL-------GA--------------NASAFSLKLALELFRQRKFWMFVL-----YVVGVACVYDVFD 235 (396)
T ss_pred Cchh---h-hhhccc-------cc--------------ccCCCCHHHHHHHHcCCcHHHHHH-----HHHHHHHHHHHHH
Confidence 4321 0 000000 00 000000112345555544322211 1222222333344
Q ss_pred HhHHHHHHHc----CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 012627 255 FYAPVIFQSL----GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPL 330 (459)
Q Consensus 255 ~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (459)
.+.+.+++++ +.+....+.......+...++.+..+++.||+++|+.+..+..+..+...+....
T Consensus 236 ~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~----------- 304 (396)
T TIGR00882 236 QQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA----------- 304 (396)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc-----------
Confidence 4566666553 3444556777888888888899999999999999998776666555544432221
Q ss_pred CchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 012627 331 PKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSV-VVCNNLLFTALIAQAFLAALCHLKFGIFLVFGG 409 (459)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (459)
...+.......+.+.+..... .....+..+..|++.++++.+. .+....++..+++.+.|++.|..|+...+...+
T Consensus 305 --~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~ 381 (396)
T TIGR00882 305 --TTALEVVILKMLHAFEVPFLL-VGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLG 381 (396)
T ss_pred --CChHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHH
Confidence 112223333333333332221 1223344566788888887766 567889999999999999999888766555544
Q ss_pred HHHHHH
Q 012627 410 LVVIMS 415 (459)
Q Consensus 410 ~~~~~~ 415 (459)
++.++.
T Consensus 382 ~~~~i~ 387 (396)
T TIGR00882 382 CIVLLF 387 (396)
T ss_pred HHHHHH
Confidence 444433
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-25 Score=217.18 Aligned_cols=282 Identities=15% Similarity=0.148 Sum_probs=199.7
Q ss_pred ccccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhh------------------
Q 012627 21 TETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV------------------ 82 (459)
Q Consensus 21 ~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~------------------ 82 (459)
+.+++|+++..+.|++.+.+.++++++.++.|+++||+|||+++.+++++++++++++++.+
T Consensus 58 ~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~ 137 (633)
T TIGR00805 58 TIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNL 137 (633)
T ss_pred hhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccc
Confidence 45778999999999999999999999999999999999999999999999999999998763
Q ss_pred ---------------------------------hHHHHHHHHHHhhhhhhhhcchhhHHHHhcCCCccchhHHHHHHHHH
Q 012627 83 ---------------------------------HISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTT 129 (459)
Q Consensus 83 ---------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 129 (459)
.+..++++|+++|+|.+..++...+++.|++|+++|+++++++..+.
T Consensus 138 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~ 217 (633)
T TIGR00805 138 SSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIA 217 (633)
T ss_pred cccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHH
Confidence 25678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccc-C-------------------chhhHHHHhhHHHHHHHHHHhcccCCC-hhhHHhcCCHHHH
Q 012627 130 CLGILVANLINYGTEKIH-P-------------------WGWRLSLGLATVPATLMFVGGLFLPET-PNSLVEQGKLDEA 188 (459)
Q Consensus 130 ~~G~~lg~~~~~~~~~~~-~-------------------~gwr~~f~~~~~~~~~~~~~~~~l~e~-p~~~~~~~~~~~~ 188 (459)
.+|.++|++++....... . .+||..|++.+++.++..+.++++|++ |+.. .+.+.++.
T Consensus 218 ~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~-~~~~~~~~ 296 (633)
T TIGR00805 218 VFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEG-KRVNVDVH 296 (633)
T ss_pred HhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcc-cccchhhh
Confidence 999999999975544211 0 138888999888887776655566654 3210 00000000
Q ss_pred HHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHHHH-cCCC
Q 012627 189 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFG 267 (459)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~ 267 (459)
++.. .. ..+.+.. . +.....++.....+.+++++..+. .. +..+......+.+..|+|.++++ +|++
T Consensus 297 ~~~~--~~-~~~~~~~-~---~~~~~~~~~~~~~~~Ll~n~~f~~----~~-l~~~~~~~~~~~~~~~lP~yl~~~~g~s 364 (633)
T TIGR00805 297 ETEK--LE-KSEDKSR-K---KNSDITKDFPKIIKRLLCNPIYML----VI-LAQVIDSLAFNGYITFLPKYLENQYGIS 364 (633)
T ss_pred hhhc--cc-ccccccc-h---hhhhhHHHHHHHHHHHHcCcHHHH----HH-HHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 0000 00 0000000 0 000001111223455555553222 22 44555566677788899999975 9999
Q ss_pred CCchhHHHHHHHH-HHHHHHHHHHHHHHHhCCc--ceeehhhHHHHHHHHH
Q 012627 268 SGAALYSSVITGI-ALCIAALISMAFVDKFGRR--AFFLEAGTEMIIYMVI 315 (459)
Q Consensus 268 ~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~ 315 (459)
+.+++++.....+ +.+++.+++|+++||++.+ +....+.....++.++
T Consensus 365 ~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 365 SAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 9999988877666 5688999999999999844 4455555444444433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-24 Score=203.42 Aligned_cols=359 Identities=12% Similarity=0.024 Sum_probs=214.3
Q ss_pred ccccCchhHHHHHHHhHHHHHHHHHHhhhhhcc-cccchhhhHHHHHHHHHHHHHHhhhhHHH-HHHHHHHhhhhhhhhc
Q 012627 25 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRS-RGRRASIMVGSVSFFIGAILNACAVHISM-LLLGRIFLGMGIGFGN 102 (459)
Q Consensus 25 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~~~g~~~ 102 (459)
++|.+..+.+++.+.+.....+..+++|+++|| +||||++.++.+++++++++++++++... +.++|+++|+|.|...
T Consensus 44 ~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~ 123 (489)
T PRK10207 44 QLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFK 123 (489)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhcccccc
Confidence 356667777999999998888889999999999 99999999999999999999999876544 5589999999999999
Q ss_pred chhhHHHHhcCCCc--cchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCChhhHH
Q 012627 103 QAVPLYLSEMAPAK--IRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLV 180 (459)
Q Consensus 103 ~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~~ 180 (459)
|...+++.|++|++ +|+++++++..+.++|.++||.++.... +..|||+.|++.++..++.++.....++..+...
T Consensus 124 ~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~--~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~ 201 (489)
T PRK10207 124 ANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIA--DKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIG 201 (489)
T ss_pred CCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHH--HhhChHHHHHHHHHHHHHHHHHHHHcchhhcccC
Confidence 99999999999877 4588999999999999999999855443 4458999999975543333333333332211000
Q ss_pred --hcCCHHHHHHHH-------------HHHcCCCcchHHHHHHHH----HH-HHHhhhcCchhHHhhhcCCCchHHHHHH
Q 012627 181 --EQGKLDEARKVL-------------EKVRGTANVDAEFSDLID----AS-NAARAIKNPFRNLFKKKNRPQLVIGALG 240 (459)
Q Consensus 181 --~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (459)
.+++..+..... ........ ......... .. -..++.+. .+.+|++... ...+.
T Consensus 202 ~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~f~~~~~~~--~~~~r~r~~~---~~~l~ 275 (489)
T PRK10207 202 SEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVE-VANLVLIVLSIVVTIIFFREAFKL--DKTGRNKMFV---AFVLM 275 (489)
T ss_pred CCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHH---HHHHH
Confidence 001001100000 00000000 000000000 00 00000011 1233332211 11111
Q ss_pred HhHHHhhcchhHHHHhHHHHHHH-cCCCC----CchhHHHHHHHHHHHHHHHHHHHHHHHhCCcce-------eehhhHH
Q 012627 241 IPAFQQLTGMNSILFYAPVIFQS-LGFGS----GAALYSSVITGIALCIAALISMAFVDKFGRRAF-------FLEAGTE 308 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~----~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-------~~~~~~~ 308 (459)
+........+....+..+.+.++ .+.+. -....+.....+..++..++.+++.||+++|+. +..+..+
T Consensus 276 ~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l 355 (489)
T PRK10207 276 LEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFL 355 (489)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 11222233333333445555543 22211 122344445556677778888999999998874 5555555
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHH
Q 012627 309 MIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALI 388 (459)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~ 388 (459)
..++++.+..........+ .....+..+....+.+.+.... .+....++.+..|++.++.++|+.+....+|+.++
T Consensus 356 ~~~~~~~~~~~~~~~~~~~---~~~s~~~~i~~~~l~g~Ge~~~-~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg 431 (489)
T PRK10207 356 CSLGFLTAAAAGMWFADAQ---GLTSPWFIVLVYLFQSLGELFI-SALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLG 431 (489)
T ss_pred HHHHHHHHHHHHHhhcCCC---CccCHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555443322111111111 1122344444555555554443 34546666788999999999999999999999998
Q ss_pred HHHHHHH
Q 012627 389 AQAFLAA 395 (459)
Q Consensus 389 ~~~~~~~ 395 (459)
..+....
T Consensus 432 ~~l~~~~ 438 (489)
T PRK10207 432 GYVATFT 438 (489)
T ss_pred HHHHHHh
Confidence 8777544
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-23 Score=195.07 Aligned_cols=346 Identities=18% Similarity=0.196 Sum_probs=210.8
Q ss_pred hHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcchhhHHHHh
Q 012627 32 VLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSE 111 (459)
Q Consensus 32 ~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 111 (459)
...|+.+.+.++.+++.++.|+++|.+|||.+++.+.++..+|+++++.++|...++.+..+.|+|.|... .....++|
T Consensus 79 ~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isE 157 (599)
T PF06609_consen 79 NWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISE 157 (599)
T ss_pred cchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHH
Confidence 34799999999999999999999999999999999999999999999999999999999999999987665 45566899
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHh--cccCCChhhHHhcC-CHHHH
Q 012627 112 MAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG--LFLPETPNSLVEQG-KLDEA 188 (459)
Q Consensus 112 ~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~--~~l~e~p~~~~~~~-~~~~~ 188 (459)
..|.|+|....++.....-.....++.++.... ...+|||.|++.++...+.+++. ++.|++.+.+..++ ...+.
T Consensus 158 l~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~--~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~ 235 (599)
T PF06609_consen 158 LVPNKWRGLGLAIASIPFIITTWISPLIAQLFA--AHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQ 235 (599)
T ss_pred hcccchhhhHhHHHHHHHHhhhcccHHHHHHhc--cCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHH
Confidence 999999998887777666565556777754332 23479999999988877665443 22343322111111 11222
Q ss_pred HHHHHHHc------------------CCC----cchHHHHHHHH-------HHHHHh--hhcCch--hHHhhhcCCCchH
Q 012627 189 RKVLEKVR------------------GTA----NVDAEFSDLID-------ASNAAR--AIKNPF--RNLFKKKNRPQLV 235 (459)
Q Consensus 189 ~~~~~~~~------------------~~~----~~~~~~~~~~~-------~~~~~~--~~~~~~--~~~~~~~~~~~~~ 235 (459)
.+.++.+. +.. +.........- -.--|. ..++++ .++++++ | .+
T Consensus 236 l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~--r-~~ 312 (599)
T PF06609_consen 236 LKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDR--R-GF 312 (599)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccc--h-HH
Confidence 22222221 100 00000000000 000010 112222 2344432 2 22
Q ss_pred HHHHHHhHHHhhcchhHHHHhHHHHHHH-cCCCCC---chhHHHHHHHHHHHHHHHHHHHHHHHhCCcceee-hhhHHHH
Q 012627 236 IGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSG---AALYSSVITGIALCIAALISMAFVDKFGRRAFFL-EAGTEMI 310 (459)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-~~~~~~~ 310 (459)
...+ +..+.....++....+.|..... ++-++. ..++...+.+.+..++.++.+.+..+++|-|..+ .+...+.
T Consensus 313 ~~~l-vi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~t 391 (599)
T PF06609_consen 313 AALL-VISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMT 391 (599)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence 2222 23333333345555555655543 555543 5677888888999999999999999888766553 3322222
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHH
Q 012627 311 IYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQ 390 (459)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 390 (459)
+...++... .. ++...+ +....+.+++.+....+. ...++-..|++.-+++.|+..+++.+|+.++..
T Consensus 392 a~~Gama~~-----~~----~n~~~~--i~~~~l~g~giG~~~~~~-~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~a 459 (599)
T PF06609_consen 392 AFCGAMAAV-----RP----DNKNAA--IAFLVLAGFGIGGILVPA-IVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYA 459 (599)
T ss_pred HHHHHHHHc-----cC----CCcchH--HHHHHHHHHhHHHHHHHH-HHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHH
Confidence 222222211 11 111122 222333333333333222 334455678889999999999999999999888
Q ss_pred HHHHHH
Q 012627 391 AFLAAL 396 (459)
Q Consensus 391 ~~~~~~ 396 (459)
++..+.
T Consensus 460 Iy~~I~ 465 (599)
T PF06609_consen 460 IYNAIF 465 (599)
T ss_pred HHHHHH
Confidence 886544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=181.04 Aligned_cols=336 Identities=17% Similarity=0.133 Sum_probs=250.2
Q ss_pred cccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhh
Q 012627 22 ETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFG 101 (459)
Q Consensus 22 ~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 101 (459)
..+++|+|.+..|+++++..++..+.+++..+++.|+|.++.+..++++..++.++-... +.+.++.+-.+.|.|.+..
T Consensus 38 Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~ 116 (395)
T COG2807 38 IRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVI 116 (395)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHH
Confidence 367889999999999999999999999999999999999999999999999999999887 7788999999999999999
Q ss_pred cchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCChhhHHh
Q 012627 102 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVE 181 (459)
Q Consensus 102 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~~~ 181 (459)
....++++.+.||+| -+..++++.+..++|..+++.++.-..... .|||....+-+.++++.++.++.- ..|.
T Consensus 117 nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~-~gW~~aL~~WAl~allAl~~WlPq--~~r~--- 189 (395)
T COG2807 117 NVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHS-GGWRGALGFWALLALLALLIWLPQ--ALRE--- 189 (395)
T ss_pred HHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhh-ccHHHHHHHHHHHHHHHHHHHhhh--cccc---
Confidence 999999999999866 899999999999999999988853333333 479999999999998887766532 1110
Q ss_pred cCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHH
Q 012627 182 QGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF 261 (459)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (459)
+. ...+....+...++|++.-|... +++..+...+|....|+|.++
T Consensus 190 --~~---------------------------~~~~~~~~~~~~vw~~~~aW~vt-----LfmGlqS~~~Y~~~~WLP~il 235 (395)
T COG2807 190 --QA---------------------------ASIATKLVSVRKVWRSPLAWQVT-----LFMGLQSLLYYIVIGWLPAIL 235 (395)
T ss_pred --cc---------------------------cccccccccccccccCchhHHHH-----HHHHhhHHHHHHHHHHHHHHH
Confidence 00 00011122334566666544443 566778888899999999999
Q ss_pred HHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceee-hhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 012627 262 QSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFL-EAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVI 340 (459)
Q Consensus 262 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (459)
.+.|+|+.++|.+.....+..++.++....+.+|...++.+. ....++.++.+.+.+. +....+..
T Consensus 236 i~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~-----------P~~~~~lw-- 302 (395)
T COG2807 236 IDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLA-----------PGQLPILW-- 302 (395)
T ss_pred HHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh-----------hhhHHHHH--
Confidence 999999999999999999999999999999999876554443 3344444444444322 11222222
Q ss_pred HHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHH
Q 012627 341 VICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK-FGIFLVFGGLVVI 413 (459)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 413 (459)
..+++.+.+..++-.........-.++..+.-.|+.+.++++....+|.++|.+.|..| +...+...+.+.+
T Consensus 303 -~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i 375 (395)
T COG2807 303 -ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATL 375 (395)
T ss_pred -HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHH
Confidence 23344443433322222222333445666888899999999999999999999999877 4444444333333
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-24 Score=186.59 Aligned_cols=340 Identities=14% Similarity=0.148 Sum_probs=252.8
Q ss_pred ccccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHH---hhhhHHHHHHHHHHhhhh
Q 012627 21 TETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA---CAVHISMLLLGRIFLGMG 97 (459)
Q Consensus 21 ~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~ 97 (459)
.-.+.|+++..+.+++...++.+|.+.+++.|++.+|+|+|+.++.|+.++++++.++. ...+|..++.+-++.|.|
T Consensus 38 ~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~G 117 (422)
T COG0738 38 HLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASG 117 (422)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 34678899999999999999999999999999999999999999999999999999984 567899999999999999
Q ss_pred hhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccc-----------------cCchhhHHHHhhHH
Q 012627 98 IGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKI-----------------HPWGWRLSLGLATV 160 (459)
Q Consensus 98 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~-----------------~~~gwr~~f~~~~~ 160 (459)
.+........+++...++++..+.+++.+...++|.+++|+++...... ....||++|...+.
T Consensus 118 i~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~ 197 (422)
T COG0738 118 IGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAG 197 (422)
T ss_pred hHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 9999999999999999999899999999999999999999996555441 01248888888888
Q ss_pred HHHHHHHHhcc--cCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHH
Q 012627 161 PATLMFVGGLF--LPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGA 238 (459)
Q Consensus 161 ~~~~~~~~~~~--l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (459)
..++..+.... .|+.+..- ++..+..+....++++++..+.-.
T Consensus 198 ~lvll~v~~~~~k~p~~~~~~--------------------------------~~~~~~~~~~~~~l~~~~~~~~gv--- 242 (422)
T COG0738 198 LLVLLAVLILLSKLPDLQVAA--------------------------------PSLGASGSAGLSSLFQNKHLRLGV--- 242 (422)
T ss_pred HHHHHHHHHHhccCCcCCccc--------------------------------ccccccccchHHHHHhChHHHHHH---
Confidence 77776655443 44433100 000000011345666666544333
Q ss_pred HHHhHHHhhcchhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHH
Q 012627 239 LGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVA 317 (459)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 317 (459)
+..+++.........|++.++.+ .|.+..++....+...++.++|++++.++.+|+...|.+.....+..+.++...
T Consensus 243 --l~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~ 320 (422)
T COG0738 243 --LAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVA 320 (422)
T ss_pred --HHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667788899999987 888999999999999999999999999999999988887766555544444444
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 012627 318 ITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALC 397 (459)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 397 (459)
+.. ....+......+...+..++.+ +....+..|. . ....|........|+++.|++.|++.|
T Consensus 321 l~~--------------g~v~~~~l~~ig~F~simfPTI-fslal~~l~~-~-ts~~s~~l~maivGGAiiP~l~G~i~d 383 (422)
T COG0738 321 LIG--------------GVVALYALFLIGLFNSIMFPTI-FSLALKNLGE-H-TSVGSGLLVMAIVGGAIIPPLQGVIAD 383 (422)
T ss_pred Hhc--------------ChHHHHHHHHHHHHhHHHHHHH-HHHHHhccCc-c-ccccceeeeeheecchHHHHHHHHHHH
Confidence 432 1333444455555556566444 5555677773 3 333344446777899999999999999
Q ss_pred hhhHHHHHH-HHHHHHHH
Q 012627 398 HLKFGIFLV-FGGLVVIM 414 (459)
Q Consensus 398 ~~~~~~~~~-~~~~~~~~ 414 (459)
+.+...... ....|.+.
T Consensus 384 ~~g~~~~~~~~pllc~ly 401 (422)
T COG0738 384 MFGIQLTFLIVPLLCYLY 401 (422)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 988554433 44444443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-23 Score=196.37 Aligned_cols=382 Identities=10% Similarity=0.037 Sum_probs=230.9
Q ss_pred cccCchhHHHHHHHhHHHHHHHHHHhhhhhcc-cccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcch
Q 012627 26 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRS-RGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQA 104 (459)
Q Consensus 26 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 104 (459)
+|++..+.+++.+.+.+++.++++++|+++|| +|||+++.++.++.+++.++.+++++++.+.+.|++.|++.|...+.
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~ 122 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKAN 122 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCC
Confidence 67888899999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhcCCCcc---chhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccC----CChh
Q 012627 105 VPLYLSEMAPAKI---RGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLP----ETPN 177 (459)
Q Consensus 105 ~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~----e~p~ 177 (459)
..++++|++|+++ |+++++++..+.++|.++||.++... .+..|||+.|.+.++..++..+..++.+ +.|+
T Consensus 123 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l--~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~ 200 (475)
T TIGR00924 123 PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVI--AENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGS 200 (475)
T ss_pred HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHH--HHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCC
Confidence 9999999998764 88899999999999999999995443 3445899999998765555433333322 2221
Q ss_pred hHHhcCCHHHHHHHHH-------------H-HcCCCcchHHHHHHHHH------HHHHh-hhcCchhHHhhhcCCCchHH
Q 012627 178 SLVEQGKLDEARKVLE-------------K-VRGTANVDAEFSDLIDA------SNAAR-AIKNPFRNLFKKKNRPQLVI 236 (459)
Q Consensus 178 ~~~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~ 236 (459)
.. .+.+.++.+.... . ....+... .+..... ....+ ..+.......+++. . ..+
T Consensus 201 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~l 275 (475)
T TIGR00924 201 VP-DPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVI--ANILLMTVTLAVIIFFFRLAFKPRLDAVARNKM-Y-AYI 275 (475)
T ss_pred CC-CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHH-H-HHH
Confidence 00 0000011000000 0 00000000 0000000 00000 00001111111111 1 111
Q ss_pred HHHHHhHHHhhcchhHHHHhHHHHHHH-cCCCCC----chhHHHHHHHHHHHHHHHHHHHHHHHhCCc-----cee--eh
Q 012627 237 GALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSG----AALYSSVITGIALCIAALISMAFVDKFGRR-----AFF--LE 304 (459)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~----~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-----~~~--~~ 304 (459)
.++ +........+.......+.+.++ .+.+.. ..+.+.....+..++..++..++..+.+|| ... ..
T Consensus 276 ~l~-~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~ 354 (475)
T TIGR00924 276 VLF-LEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTL 354 (475)
T ss_pred HHH-HHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH
Confidence 111 22333333333444445555543 333322 256788888888888877766554555443 222 34
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHH
Q 012627 305 AGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLF 384 (459)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~ 384 (459)
+.++..+++..+.+.... . +.. ...+.+..+....+...+-. ...|....+..+..|++.||+.+|+......+|
T Consensus 355 G~~l~~~~~~~~~~~~~~--~-~~~-~~~s~~~~i~~~~~~~~ge~-~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g 429 (475)
T TIGR00924 355 GMLFCGASFLTFAASIWF--A-DAG-GLTSPWFMVLIYLFQTLGEL-MISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMG 429 (475)
T ss_pred HHHHHHHHHHHHHHHHhh--c-CCC-CccCHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 455555555444433111 1 111 11233444444445555533 445666777789999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHH
Q 012627 385 TALIAQAFLAALCHLKFGIF-LVFGGLVVIMSAFIYF 420 (459)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 420 (459)
..+++.+.....+..++... .....++.+.+++..+
T Consensus 430 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (475)
T TIGR00924 430 SLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMAL 466 (475)
T ss_pred HHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 99998888876665444333 3333444444444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.8e-23 Score=192.53 Aligned_cols=345 Identities=9% Similarity=-0.052 Sum_probs=217.7
Q ss_pred cccCchhHHHH--HHHhHHHHHHHHHHh-hhhhcccccchhhhHHHHHH-HHHHHHHH---hhhh-HHHHHHHHHHhhhh
Q 012627 26 CKYDNQVLTLF--TSSLYFAGLVSTFGA-SYVTRSRGRRASIMVGSVSF-FIGAILNA---CAVH-ISMLLLGRIFLGMG 97 (459)
Q Consensus 26 ~~~s~~~~~~~--~s~~~l~~~i~~~~~-g~l~dr~Grr~~~~~~~~~~-~~~~~~~~---~~~~-~~~l~~~r~l~G~~ 97 (459)
.|.|.+++|++ .+++.+...+.++++ ++..||+||||..++.+.+. +......+ ...+ ...++..-++.++.
T Consensus 31 ~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (390)
T TIGR02718 31 DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLA 110 (390)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHH
Confidence 36788899997 467788888888888 55799999999875555332 22222222 2222 33445556667777
Q ss_pred hhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCChh
Q 012627 98 IGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPN 177 (459)
Q Consensus 98 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~ 177 (459)
.+...+...++..|..++++++...+....+..+|.++|+.. .....+..|||.+|++.++..++..+..++++|+++
T Consensus 111 ~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~--~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~ 188 (390)
T TIGR02718 111 SATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAG--TLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAV 188 (390)
T ss_pred HHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 888888888899999999988999999999989999999876 333344568999999999888776555545443321
Q ss_pred hHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhH
Q 012627 178 SLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYA 257 (459)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (459)
. +++.++ ....++++.+|++..+.... ..+...........+.
T Consensus 189 ~---~~~~~~-----------------------------~~~~~~~~~l~~~~~~~~~~-----~~~l~~~~~~~~~~~~ 231 (390)
T TIGR02718 189 A---SPEAPL-----------------------------ARRASLFRFFRRPLAWSLLA-----LALLSAMTAVSGFGLS 231 (390)
T ss_pred C---ccccch-----------------------------hhHHHHHHHHcCcCHHHHHH-----HHHHHHHHHHHHHHHh
Confidence 0 000000 00112445555554333222 2222333344455567
Q ss_pred HHHHHHcCCCCCchhHHHHHHHH-HHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHH
Q 012627 258 PVIFQSLGFGSGAALYSSVITGI-ALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGI 336 (459)
Q Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (459)
+.++++.|+++++.+......++ ..+++.++.|++.||+|+|+.+..+.....+......... .... . ....
T Consensus 232 ~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~-~~~~----~--~~~~ 304 (390)
T TIGR02718 232 KLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQA-AFWL----A--PGIA 304 (390)
T ss_pred hHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-Hccc----C--CcHH
Confidence 77888899999999998887764 6667789999999999999887765544422222211111 0000 0 0111
Q ss_pred HHHHHHHHHHHHHhhcccccceeeecccCCc-ccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 012627 337 FLVIVICLFVLAYGRSWGPLGWLVPSELFPL-EMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMS 415 (459)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (459)
.......+..+..+...... .....+..++ +.+++.+++.+...+++..+++.+.|.+.|..|+...+...+++.+.+
T Consensus 305 ~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a 383 (390)
T TIGR02718 305 VAWSCSAFGSLITGITSVAI-YTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLA 383 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 22222222222333333333 2222344554 788999999999999999999999999999888766666655555554
Q ss_pred HH
Q 012627 416 AF 417 (459)
Q Consensus 416 ~~ 417 (459)
.+
T Consensus 384 ~~ 385 (390)
T TIGR02718 384 IL 385 (390)
T ss_pred HH
Confidence 43
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=191.06 Aligned_cols=379 Identities=17% Similarity=0.136 Sum_probs=227.6
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhh------hhHHHHHHHHHHhhh
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA------VHISMLLLGRIFLGM 96 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~r~l~G~ 96 (459)
.+++|+|..+++++.++. ..+..++++.|++.||+|||+++.++.++++++.++++++ ++++.+++.|++.|+
T Consensus 54 ~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~ 132 (591)
T PTZ00207 54 QARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTL 132 (591)
T ss_pred HHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 556788888889998874 4556788889999999999999999999999999999997 689999999999999
Q ss_pred hhhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hccc--C
Q 012627 97 GIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFL--P 173 (459)
Q Consensus 97 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l--~ 173 (459)
|.+...+.+...+.+|+| ++||++.|+...+.++|.++.+.+...... .+|+..|++.+++.++..++ ..++ |
T Consensus 133 G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~---~~~~~~fl~l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 133 GCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS---DNTSAYFFFLMSFALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence 999999999999999997 679999999999999999865544222222 25888888888887776444 3334 4
Q ss_pred CChhhHHhcCCHHHHHHHHHHHcCC--------------------------------------Cc---------------
Q 012627 174 ETPNSLVEQGKLDEARKVLEKVRGT--------------------------------------AN--------------- 200 (459)
Q Consensus 174 e~p~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~--------------- 200 (459)
+.|++..++++.++.++..++..+. +.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll 288 (591)
T PTZ00207 209 PFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTV 288 (591)
T ss_pred cchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 4444433332222222221111000 00
Q ss_pred -----------------c---hHHHHHHHHHH---HHHh--------h-h----cCchhHHhhhcCCCchHHHHHHHhHH
Q 012627 201 -----------------V---DAEFSDLIDAS---NAAR--------A-I----KNPFRNLFKKKNRPQLVIGALGIPAF 244 (459)
Q Consensus 201 -----------------~---~~~~~~~~~~~---~~~~--------~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (459)
. +.+..+..+.. ..++ + . ..++.+.++.. -+|++.+..+
T Consensus 289 ~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~-----d~Wll~~~~~ 363 (591)
T PTZ00207 289 IFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTA-----RLWCLLWSIF 363 (591)
T ss_pred HHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhch-----hHHHHHHHHH
Confidence 0 00000000000 0000 0 0 00122222222 2333324555
Q ss_pred HhhcchhHHHHhHHHHHHHc-CCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhCCcc----ee-ehhhHH---HHHHH
Q 012627 245 QQLTGMNSILFYAPVIFQSL-GFGSGA--ALYSSVITGIALCIAALISMAFVDKFGRRA----FF-LEAGTE---MIIYM 313 (459)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~----~~-~~~~~~---~~~~~ 313 (459)
+...........+.++.+.+ |.+.+. ...+.+..++++.+|++..|.+.....+|+ .- .....+ +.++.
T Consensus 364 cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~ 443 (591)
T PTZ00207 364 CCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITM 443 (591)
T ss_pred HhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHH
Confidence 55555555666677777877 763333 333678889999999999998873333332 21 111111 22222
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHH-HHHH
Q 012627 314 VIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALI-AQAF 392 (459)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~-~~~~ 392 (459)
+++.+.. +. -.+.+...+.+++++..++.. ...++|+|. ++-|+-.-+.....-+|..+. ..++
T Consensus 444 lll~~~~----------p~---~~L~~~~~lvg~~~G~~~~~~-~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~ 508 (591)
T PTZ00207 444 LTLFLTL----------PK---AALPLPYFIAAFANGFMAATI-ALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLY 508 (591)
T ss_pred HHHHHHC----------Cc---cHhHHHHHHHHHHhhHhHHHH-HHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHH
Confidence 2222211 10 234455566666766666444 455689999 666776666655555555555 4566
Q ss_pred HHHHhhhh--------------HHHHHHHHHHHHHHHHHHHHhcCCCC
Q 012627 393 LAALCHLK--------------FGIFLVFGGLVVIMSAFIYFFLPETK 426 (459)
Q Consensus 393 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (459)
|.++|... ...+.++++++.+..++......+++
T Consensus 509 G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r 556 (591)
T PTZ00207 509 GEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR 556 (591)
T ss_pred HHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence 77766432 13455566666665555444444444
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-21 Score=188.11 Aligned_cols=332 Identities=12% Similarity=0.052 Sum_probs=205.4
Q ss_pred cccccCchhHHHHHHHhHHHHHHHHHHhhhhhc----cccc-chhhhHHHHHHHHHHHHHHhhh------hHHHHHHHHH
Q 012627 24 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTR----SRGR-RASIMVGSVSFFIGAILNACAV------HISMLLLGRI 92 (459)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~d----r~Gr-r~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~r~ 92 (459)
|..|++..++|.+..+..+.-++..|++|.++| |+|| |+.++.+.+..+++..++...+ .+..+++.-+
T Consensus 35 ~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~ 114 (473)
T PRK10429 35 DVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYI 114 (473)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 445778899999999999999999999999999 6698 6667778888888766664433 2445666777
Q ss_pred HhhhhhhhhcchhhHHHHhcC-CCccchhHHHHHHHHHHHHHHHHHHHHhc-----cccccCchhhHHHHhhHHHHHHHH
Q 012627 93 FLGMGIGFGNQAVPLYLSEMA-PAKIRGAVNQLFQLTTCLGILVANLINYG-----TEKIHPWGWRLSLGLATVPATLMF 166 (459)
Q Consensus 93 l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~lg~~~~~~-----~~~~~~~gwr~~f~~~~~~~~~~~ 166 (459)
+.+++.....++-.++..|.. +++||.+..++...+.++|..+.+.+... ....+..+|+....+.+++.++..
T Consensus 115 l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~ 194 (473)
T PRK10429 115 LWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVST 194 (473)
T ss_pred HHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 788888888999999999999 58899999999777777775555443221 111222468888888777766654
Q ss_pred HH-hcccCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhH----HhhhcCCCchHHHHHHH
Q 012627 167 VG-GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRN----LFKKKNRPQLVIGALGI 241 (459)
Q Consensus 167 ~~-~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 241 (459)
+. .+..+|.++....+. +++.+.++++ +++++..+ ..+ .
T Consensus 195 ~~~~~~~~e~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~n~~~~----~ll-~ 238 (473)
T PRK10429 195 IITLRNVHEVYSSDNQVS-------------------------------AEGSHLTLKDIVALIYKNDQLS----CLL-G 238 (473)
T ss_pred HHHHcCceecCCcccccc-------------------------------ccccCCCHHHHHHHHhcCHHHH----HHH-H
Confidence 44 344676531000000 0001122233 33332221 111 2
Q ss_pred hHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHH
Q 012627 242 PAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLA 321 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 321 (459)
..+...........+.+++.+....+....+.......+..+++.++.+++.||+|+|+.+..+..+..++.+.......
T Consensus 239 ~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
T PRK10429 239 MALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGL 318 (473)
T ss_pred HHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22222333344444445454443334445556666667888899999999999999999887666554444433322110
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCC-------cccccccchHHHHHHHHHHHHHHHHHHH
Q 012627 322 LEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFP-------LEMRSAGQSVVVCNNLLFTALIAQAFLA 394 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 394 (459)
. +....+..++...+.+.+.+... +....+.+|..+ .+..|...|.......++..+++.+.|.
T Consensus 319 ~--------~~~~~~~~~i~~~l~g~~~~~~~-~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~ 389 (473)
T PRK10429 319 A--------APHNALLIVIAGILLNIGTALFW-VLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGV 389 (473)
T ss_pred c--------CchhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11122333333334444444333 333455567754 2334568888889999999999999999
Q ss_pred HHhhhh
Q 012627 395 ALCHLK 400 (459)
Q Consensus 395 ~~~~~~ 400 (459)
+.+..|
T Consensus 390 ~l~~~G 395 (473)
T PRK10429 390 VLGLIG 395 (473)
T ss_pred HHHHcC
Confidence 887544
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.6e-21 Score=176.75 Aligned_cols=380 Identities=11% Similarity=0.104 Sum_probs=238.1
Q ss_pred ccccCchhHHHHHHHhHHHHHHHHHHhhhhhc----ccccchhhhHH-HHHHHHHHHHHHhhhhHH--------------
Q 012627 25 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTR----SRGRRASIMVG-SVSFFIGAILNACAVHIS-------------- 85 (459)
Q Consensus 25 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~d----r~Grr~~~~~~-~~~~~~~~~~~~~~~~~~-------------- 85 (459)
..|.+..+.+++..+..+...+.+++.|+++| |+||||.++.+ .+...++.++.+++++.+
T Consensus 33 ~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~ 112 (477)
T TIGR01301 33 ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPR 112 (477)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhH
Confidence 46677888999999999999999999999999 59999998774 666667767777776643
Q ss_pred ---HHHHHHHHhhhhhhhhcchhhHHHHhcCCCccc--hhHHHHHHHHHHHHHHHHHHHHhcccccc-------------
Q 012627 86 ---MLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIR--GAVNQLFQLTTCLGILVANLINYGTEKIH------------- 147 (459)
Q Consensus 86 ---~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~lg~~~~~~~~~~~------------- 147 (459)
.++++-.+..++.....++..++++|.+|+++| +.+.++.+...++|.++|+.+++.....+
T Consensus 113 ~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~ 192 (477)
T TIGR01301 113 AIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVS 192 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccc
Confidence 223333344557788888899999999998865 68999999999999999999875431111
Q ss_pred CchhhHHHHhhHHHHHHHHHH-hcccCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHh
Q 012627 148 PWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLF 226 (459)
Q Consensus 148 ~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (459)
..+.|..|++.++..++..+. .+.++|.|....++.+.++. +.. ++.+.+..+++++
T Consensus 193 ~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~-------~~~---------------~~~~~~~~~~~i~ 250 (477)
T TIGR01301 193 CANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEA-------APP---------------SKHGEEAFFGELF 250 (477)
T ss_pred cchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhc-------ccc---------------cccchhhhHHHHH
Confidence 026789999988887777555 56688876311000000000 000 0000012234444
Q ss_pred hhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHHH-H-cCCCCCc----------hhHHHHHHHHHHHHHHHHHHHHHH
Q 012627 227 KKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ-S-LGFGSGA----------ALYSSVITGIALCIAALISMAFVD 294 (459)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~~~~----------~~~~~~~~~~~~~~~~~~~g~l~d 294 (459)
+.-+.-+.....+++..++.+.+...+..|.+.++. + ++-++.. ..+.....++...+.+++..++.+
T Consensus 251 ~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~ 330 (477)
T TIGR01301 251 GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCR 330 (477)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433222222333335566666666777777666664 3 4433221 123344555666677778888999
Q ss_pred HhCC-cceeehhhHHHHHHHHHHHHHHHHHhc--C-C---C--CCCchhHHHHHHHHHHHHHHHhhcccccceeeecccC
Q 012627 295 KFGR-RAFFLEAGTEMIIYMVIVAITLALEFG--E-G---K--PLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELF 365 (459)
Q Consensus 295 ~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (459)
|+|+ |+....+.++.++++....+......+ . + . ..+....+..++.....+..++... .++++++++..
T Consensus 331 ~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~-siPfal~s~~~ 409 (477)
T TIGR01301 331 GWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITY-SIPFALASIRS 409 (477)
T ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHH-HHhHHHHHHHc
Confidence 9985 555566666666666655544321100 0 0 0 0111112555566666666666444 56678888888
Q ss_pred Cc--ccccccchHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHH-HHHHHHhcCCCCC
Q 012627 366 PL--EMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK--FGIFLVFGGLVVIM-SAFIYFFLPETKQ 427 (459)
Q Consensus 366 p~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 427 (459)
|+ +..|..+|+.|.+..+.+.+.....|.+.+..+ ....+.++++..++ ++...+.+|+++.
T Consensus 410 ~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 410 SNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred cccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 84 445999999999999999999988888655444 33344455544444 4555566676543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=173.09 Aligned_cols=329 Identities=16% Similarity=0.069 Sum_probs=224.4
Q ss_pred cccCchhHHHHHHHhHHHHHHHHHHhhhhhcccc-cchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcch
Q 012627 26 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRG-RRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQA 104 (459)
Q Consensus 26 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~G-rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 104 (459)
.|.|..|+|.+.+...+...++++++|.++||++ +|+++.+..++.++........++++.+++.-++..+......|.
T Consensus 32 ~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl 111 (400)
T PF03825_consen 32 RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPL 111 (400)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHH
Confidence 4678899999999999999999999999999986 678888888888887777788899999999988889888888899
Q ss_pred hhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHH-h-ccccccCchhhHHHHhhHHHHHHHHHHhcccCCChhhHHhc
Q 012627 105 VPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLIN-Y-GTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQ 182 (459)
Q Consensus 105 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~-~-~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~~~~ 182 (459)
..++..+... +++.-.|-.....++|.+++.... . .....+..+..+.+++.+...++.....+.+|+.|.....+
T Consensus 112 ~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~ 189 (400)
T PF03825_consen 112 SDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPKRSAK 189 (400)
T ss_pred HHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCccccccC
Confidence 9998888875 345556666667777776664331 1 11111111233456666665555555556678776210000
Q ss_pred CCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHHH
Q 012627 183 GKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ 262 (459)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (459)
++. ++....+..+++|++...... +..+...........+.+.+++
T Consensus 190 ~~~-----------------------------~~~~~~~~~~llk~~~~~~Fl-----l~~~l~~~~~~~~~~f~~~yl~ 235 (400)
T PF03825_consen 190 ESV-----------------------------KKLLGLDALKLLKNPRFLVFL-----LAAFLIGISHAAYYTFFSIYLQ 235 (400)
T ss_pred CCc-----------------------------ccccchHHHHHhcCccHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000011223455555433222 2333444455667778888999
Q ss_pred HcC-CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHH-HH
Q 012627 263 SLG-FGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFL-VI 340 (459)
Q Consensus 263 ~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 340 (459)
+.| .+....+....+..+..++.-...+++.+|+|.++++..+....++=..+..... .+....+.. +.
T Consensus 236 ~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~---------~~~~~~~~~~~l 306 (400)
T PF03825_consen 236 ELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS---------DPWPFIVALQLL 306 (400)
T ss_pred HcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc---------CCcHHHHHHHHH
Confidence 987 7777888888888899999999999999999999988877777777666665541 011111111 11
Q ss_pred HHHHHHHHHhhcccccceeeecccCCcccccccchHHHHH-HHHHHHHHHHHHHHHHhhhh
Q 012627 341 VICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCN-NLLFTALIAQAFLAALCHLK 400 (459)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 400 (459)
...+-+..++..+.. ...++.+..|++.|++++++.+.. ..+|..++..+.|++.|+.+
T Consensus 307 ~q~lhG~tf~~~~~a-~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g 366 (400)
T PF03825_consen 307 GQLLHGLTFGLFHAA-SVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG 366 (400)
T ss_pred HHhhhhHHHHHHHHH-HHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 123355555544433 356678999999999999998765 57899999999999999876
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-20 Score=177.17 Aligned_cols=351 Identities=10% Similarity=0.070 Sum_probs=200.6
Q ss_pred ccccCchhHHHHHHHhHHHHHHHHHHhhhhhcc-cccchhhhHHHHHHHHHHHHHHhhh-hHHHHHHHHHHhhhhhhhhc
Q 012627 25 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRS-RGRRASIMVGSVSFFIGAILNACAV-HISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 25 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~ 102 (459)
++|++..+.+++.+.+........+++|+++|| +|||+++..+.++.+++..++++++ +.+.+.+.|+++|++.|...
T Consensus 51 ~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~ 130 (500)
T PRK09584 51 QLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFK 130 (500)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhccc
Confidence 456667777888888776666667899999999 5999999999999999999998874 56677889999999999999
Q ss_pred chhhHHHHhcCCCcc--chhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH----hcccCCCh
Q 012627 103 QAVPLYLSEMAPAKI--RGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG----GLFLPETP 176 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~----~~~l~e~p 176 (459)
+...+++.|++|+++ |..++++++.+.++|..+||.++... .+..|||+.|++.++..++..+. ...++|.+
T Consensus 131 ~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l--~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~ 208 (500)
T PRK09584 131 ANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWL--AAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYG 208 (500)
T ss_pred CCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHH--HHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCC
Confidence 999999999998653 45688999999999999999995444 34568999999987654443322 22244431
Q ss_pred hhHHhcCCHHHHHHH-----------HHHHcCCCcchHHHHHHHHH------HHHHhhhcCchhHHhhhcCCCchHHHHH
Q 012627 177 NSLVEQGKLDEARKV-----------LEKVRGTANVDAEFSDLIDA------SNAARAIKNPFRNLFKKKNRPQLVIGAL 239 (459)
Q Consensus 177 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (459)
+.. .+++.+..... .......+. + ..+..... ...... ....++.-++ +....+.
T Consensus 209 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~ 280 (500)
T PRK09584 209 SKP-DFEPINYRKLLLTIVGVVALIAIATWLLHNQ-E-IARMALGVVALGIVVIFGKE-AFAMKGAARR----KMIVAFI 280 (500)
T ss_pred CCC-CccccchhhHHHHHHHHHHHHHHHHHHHhcc-h-HHHHHHHHHHHHHHHHHHHH-HhhcCHHHHH----HHHHHHH
Confidence 100 00001100000 000000000 0 00000000 000000 0000011111 1111111
Q ss_pred HHhHHHhhcchhHHHHhHHHHHHH---cCCCC------CchhHHHHHHHHHHHHHHHHHHHHHHHhCCc----ceeehhh
Q 012627 240 GIPAFQQLTGMNSILFYAPVIFQS---LGFGS------GAALYSSVITGIALCIAALISMAFVDKFGRR----AFFLEAG 306 (459)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~------~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~----~~~~~~~ 306 (459)
.+.....++......+..+.. .+.+. ...+.......+..++..++..++-+|.++| +.+..+.
T Consensus 281 ---~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~ 357 (500)
T PRK09584 281 ---LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGM 357 (500)
T ss_pred ---HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHH
Confidence 111122223333333434321 11111 1245666677777777777776666666554 3444555
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHH
Q 012627 307 TEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTA 386 (459)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~ 386 (459)
.+.+++++.+...... ..+ ...-+.+..+....+.+.+ .....|....++.+..|++.||+.+|+......++..
T Consensus 358 ~l~~l~f~~l~~~~~~--~~~--~~~vs~~~~~~~~~l~~~g-e~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~ 432 (500)
T PRK09584 358 VLCSGAFLVLPLGAKF--AND--AGIVSVNWLIASYGLQSIG-ELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAAL 432 (500)
T ss_pred HHHHHHHHHHHHHHHh--cCC--CCccCHHHHHHHHHHHHHH-HHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 5556665555443211 000 0111123333333344444 3445566677778999999999999988777777777
Q ss_pred HHHHHHH
Q 012627 387 LIAQAFL 393 (459)
Q Consensus 387 ~~~~~~~ 393 (459)
++..+..
T Consensus 433 ~~g~~~~ 439 (500)
T PRK09584 433 IAGYVAN 439 (500)
T ss_pred HHHHHHH
Confidence 7666664
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-20 Score=177.90 Aligned_cols=329 Identities=13% Similarity=0.073 Sum_probs=202.6
Q ss_pred cccccCchhHHHHHHHhHHHHHHHHHHhhhhhcc----cccc-hhhhHHHHHHHHHHHHHHhhhh------HHHHHHHHH
Q 012627 24 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRS----RGRR-ASIMVGSVSFFIGAILNACAVH------ISMLLLGRI 92 (459)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr----~Grr-~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~ 92 (459)
|.+|++..++|.+.++..+..++..|+.|+++|| +||| +.++.+.+..+++.++....++ ++.+++..+
T Consensus 38 ~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~ 117 (444)
T PRK09669 38 DVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYI 117 (444)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 4567789999999999999999999999999998 7874 5566777777777766554442 456667777
Q ss_pred HhhhhhhhhcchhhHHHHhcC-CCccchhHHHHHHHHHHHHHHHHHHHHhcc-----ccccCchhhHHHHhhHHHHHHHH
Q 012627 93 FLGMGIGFGNQAVPLYLSEMA-PAKIRGAVNQLFQLTTCLGILVANLINYGT-----EKIHPWGWRLSLGLATVPATLMF 166 (459)
Q Consensus 93 l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~-----~~~~~~gwr~~f~~~~~~~~~~~ 166 (459)
+.+.+......+-.++.+|+. ++++|++..++...+..+|..+++.+.... ......+|+..+.+.++++++..
T Consensus 118 l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~ 197 (444)
T PRK09669 118 LLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLF 197 (444)
T ss_pred HHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 778777777778889999998 558899998888888888877776542111 11123579999988888777665
Q ss_pred HH-hcccCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHH
Q 012627 167 VG-GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQ 245 (459)
Q Consensus 167 ~~-~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (459)
+. .+..+|.++. ++ + ++.+.+++++..++++.++......+ .
T Consensus 198 ~~~~~~~~e~~~~----~~--~--------------------------~~~~~~~~~~~~~~n~~~~~l~~~~~-----~ 240 (444)
T PRK09669 198 FCCFFMTKERYTP----EV--D--------------------------NSSSVWKDLKLLLGNSQWRIMFIFNV-----V 240 (444)
T ss_pred HHHhCCeEEecCC----CC--c--------------------------CCCCHHHHHHHHhCCchHHHHHHHHH-----H
Confidence 44 3445553210 00 0 00001223445555555443322211 1
Q ss_pred hhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhc
Q 012627 246 QLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFG 325 (459)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (459)
............+++.+..--+++..+.......+..+++.++.+++.||+|+|+....+.....+........
T Consensus 241 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~------ 314 (444)
T PRK09669 241 LLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI------ 314 (444)
T ss_pred HHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh------
Confidence 11111222222233333211122233344455567778888899999999999988776554433322221111
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCC-------cccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012627 326 EGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFP-------LEMRSAGQSVVVCNNLLFTALIAQAFLAALCH 398 (459)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 398 (459)
+.+..+...+...+.+.+.+... +..+.+.+|..+ ++..|...|..+....++.++++.+.+.+.+.
T Consensus 315 -----~~~~~~~~~~~~~i~g~~~~~~~-~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~ 388 (444)
T PRK09669 315 -----PPSNVWLIFALNILFNFIQNLTT-PLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW 388 (444)
T ss_pred -----CcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222333444444555544333 445666667764 22345667888888999999999999998876
Q ss_pred hhH
Q 012627 399 LKF 401 (459)
Q Consensus 399 ~~~ 401 (459)
.|+
T Consensus 389 ~Gy 391 (444)
T PRK09669 389 VDY 391 (444)
T ss_pred cCC
Confidence 543
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-21 Score=183.06 Aligned_cols=377 Identities=11% Similarity=-0.017 Sum_probs=227.3
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccc-----cchhhhHHHHHHH-HHHHHHHhhhhHHHHH-HHHHHhh
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRG-----RRASIMVGSVSFF-IGAILNACAVHISMLL-LGRIFLG 95 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~G-----rr~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~r~l~G 95 (459)
.+++|+|.++++...++..+...+-.+ +|.++||++ ||+.++++.++.+ ++....+..++..... +.+++.+
T Consensus 53 ~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~ 131 (468)
T TIGR00788 53 TDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAA 131 (468)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 445678888889999999999999666 999999998 7777788777763 4434444445544444 4889999
Q ss_pred hhhhhhcchhhHHHHhcCCCccchhHH---HHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhccc
Q 012627 96 MGIGFGNQAVPLYLSEMAPAKIRGAVN---QLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL 172 (459)
Q Consensus 96 ~~~g~~~~~~~~~i~~~~~~~~r~~~~---~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l 172 (459)
++.+...++..++..|..+ +++.... +......++|.++|+.+++.. .+..+||..|++.+...++..+...++
T Consensus 132 ~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l--~~~~~~~~~f~~~a~l~ll~~~~~~~~ 208 (468)
T TIGR00788 132 LAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPL--LDKTLTRILFLITAALLLLQLFVSNLS 208 (468)
T ss_pred HHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHH--HHhcCcchHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998 5454433 333344458999998885443 344579999999988887775556778
Q ss_pred CCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhH
Q 012627 173 PETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNS 252 (459)
Q Consensus 173 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (459)
||++.....+.+.++ .. .. ... . .......++...+....++++..+......+ +.+ .......
T Consensus 209 ~E~~~~~~~~~~~~~-~~---~~-------~~~-~-~~~~~~~~~~~~~l~~~l~~~~i~~~l~fif-l~~--~~~~~~~ 272 (468)
T TIGR00788 209 KERRAFVRPRIGTYL-EM---NM-------ALL-T-LGVLANVKVQILGLRGAIQLLEIAKPLIFIF-LSY--ANLPGAS 272 (468)
T ss_pred ccccccccccccccc-hh---hh-------hhh-h-hhHHHHHHHHHHHHHHHHhcHHHHHHHHHHH-HHH--hhcCCCC
Confidence 886310000000000 00 00 000 0 0000000000111222333333222222111 101 1111111
Q ss_pred HHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 012627 253 ILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPK 332 (459)
Q Consensus 253 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (459)
...+. ...+..|+++.+.|....+.+++.+++....+++.+|++.|+.+..+..+..++.......... +... ...
T Consensus 273 ~~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~-~~~~--~gi 348 (468)
T TIGR00788 273 GSVFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKR-WNLA--FGI 348 (468)
T ss_pred ceeEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeec-cccc--cCC
Confidence 11111 1113589999999999999999999999999999999998888776666555544332211100 0000 000
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh-----HHHHHHH
Q 012627 333 GIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK-----FGIFLVF 407 (459)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 407 (459)
...+.......+...+.+..+.+. ..++.+..|++.+|+..++.+++.+++..+++.+.+.+.+..| +...+..
T Consensus 349 ~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~ 427 (468)
T TIGR00788 349 SDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLL 427 (468)
T ss_pred CCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHH
Confidence 112233333444555555566565 5556799999999999999999999999999998888888776 4444444
Q ss_pred HHHHHHHH---HHHHHhcCC
Q 012627 408 GGLVVIMS---AFIYFFLPE 424 (459)
Q Consensus 408 ~~~~~~~~---~~~~~~~~~ 424 (459)
..++.+.. +....++|+
T Consensus 428 i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 428 ILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 44433333 333345565
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.4e-19 Score=165.34 Aligned_cols=365 Identities=17% Similarity=0.110 Sum_probs=239.5
Q ss_pred chhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhh-HHHHHHHHHHHHHHhh--hhHHHHHHHHHHhhhhhhhhcchhh
Q 012627 30 NQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIM-VGSVSFFIGAILNACA--VHISMLLLGRIFLGMGIGFGNQAVP 106 (459)
Q Consensus 30 ~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~-~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~ 106 (459)
.+..++..++..+..++..|+.|.++|+-|+||.++ +..++..+++.++.+. ++++...+.-++.-++.+.......
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn 148 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN 148 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578888999999999999999999998776554 4555555666666663 3455555556666678888888999
Q ss_pred HHHHhcCCCccc--------------------------hhHHHHHHHHHHHHHHHHHHHHhcccccc------CchhhHH
Q 012627 107 LYLSEMAPAKIR--------------------------GAVNQLFQLTTCLGILVANLINYGTEKIH------PWGWRLS 154 (459)
Q Consensus 107 ~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~lg~~~~~~~~~~~------~~gwr~~ 154 (459)
+++.|..+++++ ++..+.-.....+|.++.-.+........ ..+-|..
T Consensus 149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~ 228 (477)
T PF11700_consen 149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA 228 (477)
T ss_pred HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence 999999999888 89988888888888887776643332211 2346888
Q ss_pred HHhhHHHHHHH-HHHhcccCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCc
Q 012627 155 LGLATVPATLM-FVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQ 233 (459)
Q Consensus 155 f~~~~~~~~~~-~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (459)
+.+.++.-++. ....+++||.|+....++...-... .-++..+.++++.+.+ .
T Consensus 229 ~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~-----------------------g~~~l~~t~k~~~~~~---~ 282 (477)
T PF11700_consen 229 FLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRF-----------------------GFKRLWRTFKEIRKLR---Q 282 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHH-----------------------HHHHHHHHHHHHHhCh---H
Confidence 88888876665 4456668887742100000000000 0011122223332222 2
Q ss_pred hHHHHHHHhHHHhhcchhHHHHhHHHHHH-HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCc--ceeehhhHHHH
Q 012627 234 LVIGALGIPAFQQLTGMNSILFYAPVIFQ-SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRR--AFFLEAGTEMI 310 (459)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~ 310 (459)
....+ +..++..-+...+......+.+ ++|++..+.........+.+++|+++.+++.||+|.| +.+........
T Consensus 283 -~~~fL-ia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~ 360 (477)
T PF11700_consen 283 -LFLFL-IAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWI 360 (477)
T ss_pred -HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 22222 4555556666777777777776 5999999999999999999999999999999999988 55544433332
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHH
Q 012627 311 IYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQ 390 (459)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 390 (459)
+..+ .+...... . .......+...+...+.+...+... +..-.+.+|+.|+++.+...|++...+...+.++|.
T Consensus 361 ~i~~-~g~~G~~~-~---~~g~~~~~~f~~~a~~~G~~~G~~q-s~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPl 434 (477)
T PF11700_consen 361 IIPL-YGLFGFWP-S---FFGLKSPWEFWVLAVLIGLFMGGIQ-SASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPL 434 (477)
T ss_pred HHHH-HHHHHhhh-c---ccCcccHHHHHHHHHHHHHHhhhHH-HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 2111 11110000 0 0111223334444445555554333 455666789999999999999999999999999999
Q ss_pred HHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 012627 391 AFLAALCHLK-FGIFLVFGGLVVIMSAFIYFFLPETKQV 428 (459)
Q Consensus 391 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (459)
+++.+.+..+ ....+....+.++++++++..++.+|++
T Consensus 435 l~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g~ 473 (477)
T PF11700_consen 435 LFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVEKGR 473 (477)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccchhhh
Confidence 9999998876 5555556666666667666666654443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-19 Score=169.21 Aligned_cols=329 Identities=15% Similarity=0.190 Sum_probs=233.1
Q ss_pred cccccCchhHHHHHHHhHHHHHHHHHHhhhhhc----ccccch-hhhHHHHHHHHHHHHHHhh-h-------hHHHHHHH
Q 012627 24 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTR----SRGRRA-SIMVGSVSFFIGAILNACA-V-------HISMLLLG 90 (459)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~d----r~Grr~-~~~~~~~~~~~~~~~~~~~-~-------~~~~l~~~ 90 (459)
|..|+++..+|.+..+..+..++..|+.|.++| |+|||| .++++.+..+++..++... + ....+.+.
T Consensus 30 ~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~ 109 (428)
T PF13347_consen 30 DVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVF 109 (428)
T ss_pred HHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHH
Confidence 445777888999999999999999999999999 899765 5557888888888887765 4 23446777
Q ss_pred HHHhhhhhhhhcchhhHHHHhcCC-CccchhHHHHHHHHHHHHHHHHHHHHhccccc----cC-chhhHHHHhhHHHHHH
Q 012627 91 RIFLGMGIGFGNQAVPLYLSEMAP-AKIRGAVNQLFQLTTCLGILVANLINYGTEKI----HP-WGWRLSLGLATVPATL 164 (459)
Q Consensus 91 r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~----~~-~gwr~~f~~~~~~~~~ 164 (459)
-++..++......+-.++..|..+ +++|.+..+.-..+..+|.++...+....... +. .+|++..++.+++.++
T Consensus 110 ~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v 189 (428)
T PF13347_consen 110 YILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLV 189 (428)
T ss_pred HHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHH
Confidence 777799999999999999999997 47899999999999999887555553222211 11 2799999999988888
Q ss_pred HHHH-hcccCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhH
Q 012627 165 MFVG-GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPA 243 (459)
Q Consensus 165 ~~~~-~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (459)
..++ .+.++|.++. . ++++++.+.++.++++++++..+... ...
T Consensus 190 ~~~i~~~~~ke~~~~------~------------------------~~~~~~~~~~~~~~~~~~nr~~~~l~-----~~~ 234 (428)
T PF13347_consen 190 FFLITFFFVKERSVE------V------------------------TEQEKKISLRDSLRSLFRNRPFRILL-----LAF 234 (428)
T ss_pred Hhhhhhheeeecccc------c------------------------cccccccccccchhhhcccchHHHHH-----HHH
Confidence 7655 4557772110 0 00011112244456666665544333 233
Q ss_pred HHhhcchhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHH
Q 012627 244 FQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLAL 322 (459)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (459)
++............+++.+. .+.+ ...+.......+..+++.++.++++||+|+|+....+..+.+++.+.+.+..
T Consensus 235 ~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~-- 311 (428)
T PF13347_consen 235 FLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG-- 311 (428)
T ss_pred HHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH--
Confidence 33444444455566666665 5554 5566777788899999999999999999999999988888877777665542
Q ss_pred HhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCc-------ccccccchHHHHHHHHHHHHHHHHHHHH
Q 012627 323 EFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPL-------EMRSAGQSVVVCNNLLFTALIAQAFLAA 395 (459)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (459)
..+.+..++...+.+.+.+..+ ...+.+.+|+.+. +..|...|+.+....++..+++.+.+.+
T Consensus 312 ---------~~~~~~~~i~~~l~gi~~~~~~-~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 312 ---------PGSPWLVLILFILAGIGYGAFF-VIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred ---------hhhHHHHHHHHHHhHhhhcccc-cccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 1234555666666666666555 4556666788763 3358888899999999999999999988
Q ss_pred Hhhhh
Q 012627 396 LCHLK 400 (459)
Q Consensus 396 ~~~~~ 400 (459)
.+..|
T Consensus 382 l~~~G 386 (428)
T PF13347_consen 382 LALVG 386 (428)
T ss_pred HHHhC
Confidence 76543
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-19 Score=171.35 Aligned_cols=327 Identities=11% Similarity=0.055 Sum_probs=192.4
Q ss_pred cccccCchhHHHHHHHhHHHHHHHHHHhhhhhccc----ccchhh-hHHHHHHHHHHHHHH-h----hh--hHHHHHHHH
Q 012627 24 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR----GRRASI-MVGSVSFFIGAILNA-C----AV--HISMLLLGR 91 (459)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~----Grr~~~-~~~~~~~~~~~~~~~-~----~~--~~~~l~~~r 91 (459)
+..|++..++|.+.+...+..++..++.|+++||. ||||.. ..+.+...+..++.. . ++ ..+.+++.-
T Consensus 37 ~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (448)
T PRK09848 37 DVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTY 116 (448)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHH
Confidence 33566788889999999999999999999999996 777644 556555554444432 1 11 223345556
Q ss_pred HHhhhhhhhhcchhhHHHHhcCCC-ccchhHHHHHHHH-----HHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHH
Q 012627 92 IFLGMGIGFGNQAVPLYLSEMAPA-KIRGAVNQLFQLT-----TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLM 165 (459)
Q Consensus 92 ~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~-----~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~ 165 (459)
++.+++.+...++..++..+..++ ++|.+..++-..+ ..+|..++|.++.........+|.....+.++++++.
T Consensus 117 ~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~ 196 (448)
T PRK09848 117 MGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVL 196 (448)
T ss_pred HHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence 778888888888888888887754 6788877666543 3355666676643221110112222222333333333
Q ss_pred H-HHhcccCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHH
Q 012627 166 F-VGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAF 244 (459)
Q Consensus 166 ~-~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (459)
. +.....||+++. +.+ +...+..++.+++++...... +..+
T Consensus 197 ~~~~~~~~~e~~~~---~~~------------------------------~~~~~~~~~~l~~n~~f~~~~-----~~~~ 238 (448)
T PRK09848 197 YFICFKSTRENVVR---IVA------------------------------QPSLKISLQTLKRNRPLFMLC-----IGAL 238 (448)
T ss_pred HHHHHcCcEeccCC---Ccc------------------------------CCCHHHHHHHHhCCchHHHHH-----HHHH
Confidence 2 223345665310 000 000112244556555533222 2223
Q ss_pred HhhcchhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHH
Q 012627 245 QQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALE 323 (459)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (459)
+............|+++++ +|.++...++......++.+++.++.+++.||+++|+.+..+..+..++.+.+.+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~---- 314 (448)
T PRK09848 239 CVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV---- 314 (448)
T ss_pred HHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc----
Confidence 3333344455556666665 67665555554444466778889999999999999998887776666555444321
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcc-------cccccchHHHHHHHHHHHHHHHHHHHHH
Q 012627 324 FGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLE-------MRSAGQSVVVCNNLLFTALIAQAFLAAL 396 (459)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (459)
+....+.......+.+.+.+.... ....+..|..|.+ .+|...|+.+....++..+++.+.+.+.
T Consensus 315 -------~~~~~~~~~~~~~l~g~G~~~~~~-~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l 386 (448)
T PRK09848 315 -------SVWSLPVALVALAIASIGQGVTMT-VMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL 386 (448)
T ss_pred -------CchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111223333333444444444443 3344555666543 4588889999999999999999998887
Q ss_pred hhhh
Q 012627 397 CHLK 400 (459)
Q Consensus 397 ~~~~ 400 (459)
+..|
T Consensus 387 ~~~G 390 (448)
T PRK09848 387 GLSG 390 (448)
T ss_pred HHcC
Confidence 6543
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.4e-19 Score=167.13 Aligned_cols=325 Identities=10% Similarity=0.044 Sum_probs=194.1
Q ss_pred cccccCchhHHHHHHHhHHHHHHHHHHhhhhhcc----cccch-hhhHHHHHHHHHHHHHHhhhh------HHHHHHHHH
Q 012627 24 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRS----RGRRA-SIMVGSVSFFIGAILNACAVH------ISMLLLGRI 92 (459)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr----~Grr~-~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~ 92 (459)
|..|+++..+|.+..+.-+.-++..|+.|.++|| +|||| .++++.+..+++.+++...++ ...+.+.-+
T Consensus 38 ~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~ 117 (460)
T PRK11462 38 DIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYT 117 (460)
T ss_pred HhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 5567889999999999999999999999999995 68865 555677788888777654442 445666777
Q ss_pred HhhhhhhhhcchhhHHHHhcCC-CccchhHHHHHHHHHHHHHHHHHHHHhccc-----cccCchhhHHHHhhHHHHHHHH
Q 012627 93 FLGMGIGFGNQAVPLYLSEMAP-AKIRGAVNQLFQLTTCLGILVANLINYGTE-----KIHPWGWRLSLGLATVPATLMF 166 (459)
Q Consensus 93 l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~-----~~~~~gwr~~f~~~~~~~~~~~ 166 (459)
+..++......+-.++..|..+ ++||++..++...+.++|..+++.+..... .....+|+....+.+++.+++.
T Consensus 118 ~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~ 197 (460)
T PRK11462 118 LLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMML 197 (460)
T ss_pred HHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 7788899899999999999997 688999999999999998877766532211 1112478888877777766665
Q ss_pred HHh-cccCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHH
Q 012627 167 VGG-LFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQ 245 (459)
Q Consensus 167 ~~~-~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (459)
.+. ...+|.++. ++ + +.+.++.++..++++.++..... .+.
T Consensus 198 ~i~~~~~kE~~~~---~~--~----------------------------~~~~~~~l~~~~~Nk~~~~l~~~-----~~~ 239 (460)
T PRK11462 198 AFCFFTTKERVEA---PP--T----------------------------TTSMREDLRDIWQNDQWRIVGLL-----TIF 239 (460)
T ss_pred HHHHhcceeccCC---Cc--c----------------------------CCCHHHHHHHHhCChHHHHHHHH-----HHH
Confidence 443 335554310 00 0 00011123344444433322211 112
Q ss_pred hhcchhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHh
Q 012627 246 QLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEF 324 (459)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (459)
.............++.+. .+. +...+.......+..+++.++++++.||+++|+....+.....+..+++.+.
T Consensus 240 ~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~----- 313 (460)
T PRK11462 240 NILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV----- 313 (460)
T ss_pred HHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-----
Confidence 222222222222233322 232 2334455667778888999999999999999877654433332222221111
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCc-----ccc--cccchHHHHHHHHHHHHHHHHHHHHHh
Q 012627 325 GEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPL-----EMR--SAGQSVVVCNNLLFTALIAQAFLAALC 397 (459)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-----~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~ 397 (459)
+....+...+..++.+.+.+ ...++.+.+..|..+. ..| |...+.......++.++++.+.+.+.+
T Consensus 314 ------~~~~~~~~~~~~~l~g~~~~-~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~ 386 (460)
T PRK11462 314 ------PMQASITMFVFIFVIGVLHQ-LVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA 386 (460)
T ss_pred ------chhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111122222233333332 2223334455555441 133 444566668888999999999888876
Q ss_pred hh
Q 012627 398 HL 399 (459)
Q Consensus 398 ~~ 399 (459)
..
T Consensus 387 ~~ 388 (460)
T PRK11462 387 YG 388 (460)
T ss_pred Hc
Confidence 43
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-18 Score=159.56 Aligned_cols=329 Identities=16% Similarity=0.150 Sum_probs=232.0
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcc----cccc-hhhhHHHHHHHHHHHHHHhhhh------HHHHHHHH
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRS----RGRR-ASIMVGSVSFFIGAILNACAVH------ISMLLLGR 91 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr----~Grr-~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r 91 (459)
.|.+|+++..+|.+..+.-+--++..|+.|.+.|| +||+ +.++.+.+..++.+.++-.+++ ....++.-
T Consensus 40 Tdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY 119 (467)
T COG2211 40 TDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTY 119 (467)
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHH
Confidence 56678889999999999999999999999999995 7764 5667788889998888877763 45667777
Q ss_pred HHhhhhhhhhcchhhHHHHhcCC-CccchhHHHHHHHHHHHHHHHHHHH-----HhccccccCchhhHHHHhhHHHHHHH
Q 012627 92 IFLGMGIGFGNQAVPLYLSEMAP-AKIRGAVNQLFQLTTCLGILVANLI-----NYGTEKIHPWGWRLSLGLATVPATLM 165 (459)
Q Consensus 92 ~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~lg~~~-----~~~~~~~~~~gwr~~f~~~~~~~~~~ 165 (459)
.+.+++......+-.++..|+++ ++||.+..++-..+.++|..+...+ ..........||+..-.+.+++.++.
T Consensus 120 ~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~ 199 (467)
T COG2211 120 MLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVIL 199 (467)
T ss_pred HHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHH
Confidence 89999999999999999999985 6889999999999999996655433 32233322568999998888888877
Q ss_pred HHHhcc-cCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchh----HHhhhcCCCchHHHHHH
Q 012627 166 FVGGLF-LPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFR----NLFKKKNRPQLVIGALG 240 (459)
Q Consensus 166 ~~~~~~-l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 240 (459)
.+..++ ++|.+.. +.+ .++..+.+++ .+++++.++...
T Consensus 200 ~l~~~~~v~ER~~~---~~~-----------------------------~~~~~~~~~~~~~~~~~~Nrp~~~~l----- 242 (467)
T COG2211 200 LLFCFFNVKERVVE---TQP-----------------------------TKTGVKLKLKDSFLLIFKNRPLLLLL----- 242 (467)
T ss_pred HHHHHHHhhcccCc---ccc-----------------------------CcccccccHHHHHHHHHccchHHHHH-----
Confidence 665544 7775520 000 0001122233 344444433222
Q ss_pred HhHHHhhcchhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHH
Q 012627 241 IPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAIT 319 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 319 (459)
+..++...+.+.......+|.+. .|.+.............+.+++.++..++.+|+|+|+.+..+.++..++.+++.+.
T Consensus 243 ~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~ 322 (467)
T COG2211 243 LMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT 322 (467)
T ss_pred HHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhh
Confidence 23444444455555555555543 66666677777777778888889999999999999999998877777776666554
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCc-------ccccccchHHHHHHHHHHHHHHHHH
Q 012627 320 LALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPL-------EMRSAGQSVVVCNNLLFTALIAQAF 392 (459)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~g~~~~~~~~~~~~~~~~~ 392 (459)
. .+..++.++..++.+.+.+. ..++.+.+.+|...- +..|...|....+.-++.+++..+.
T Consensus 323 ~-----------~~~~~l~~~~~~i~~~g~~~-~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~ 390 (467)
T COG2211 323 P-----------AGSVVLIVVALIIAGVGTGI-ANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIP 390 (467)
T ss_pred c-----------CcchHHHHHHHHHHHHHhhc-cccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 2 23344445555555555553 346778887777642 2347788888899999999999999
Q ss_pred HHHHhhhh
Q 012627 393 LAALCHLK 400 (459)
Q Consensus 393 ~~~~~~~~ 400 (459)
++..+..|
T Consensus 391 g~~L~~~G 398 (467)
T COG2211 391 GWILGAIG 398 (467)
T ss_pred HHHHHHcC
Confidence 99887654
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-18 Score=160.59 Aligned_cols=357 Identities=13% Similarity=0.059 Sum_probs=198.6
Q ss_pred cccCchhHHHHHHHhHHHHHHHHHHhhhhhccc-ccchhhhHHHHHHHHHHHHHHhhh-hHHHHHHHHHHhhhhhhhhcc
Q 012627 26 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-GRRASIMVGSVSFFIGAILNACAV-HISMLLLGRIFLGMGIGFGNQ 103 (459)
Q Consensus 26 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~ 103 (459)
+|.++.+.+.+.+.+.....++.+++|+++||+ ||||++.++.++.+++.++++..+ +...+.+...+.++|.|...+
T Consensus 40 lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~ 119 (493)
T PRK15462 40 LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKS 119 (493)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccc
Confidence 567788889999999999999999999999999 999999999999999988776543 223344444555566777778
Q ss_pred hhhHHHHhcCCCc--cchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhccc----CCChh
Q 012627 104 AVPLYLSEMAPAK--IRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL----PETPN 177 (459)
Q Consensus 104 ~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l----~e~p~ 177 (459)
...++++|.+|++ +|..++++...+.++|..++|.+... ..+..|||+.|.+.++..++..+..+.. ++...
T Consensus 120 ~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~--L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~ 197 (493)
T PRK15462 120 NVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGY--AQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRG 197 (493)
T ss_pred cHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHH--HHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Confidence 7889999999875 69999999999999999999999544 3445689999998766544443332221 11100
Q ss_pred hHHhcCCHHHHHH-H-HHH----------HcCCCcchHHHHHHHHHH--H----HHhhhcCchhHHhhhcCCCch-HHHH
Q 012627 178 SLVEQGKLDEARK-V-LEK----------VRGTANVDAEFSDLIDAS--N----AARAIKNPFRNLFKKKNRPQL-VIGA 238 (459)
Q Consensus 178 ~~~~~~~~~~~~~-~-~~~----------~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~-~~~~ 238 (459)
. ..++..++... . ... .......+.......-.. . --.-.+. + .++..+++. ....
T Consensus 198 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~er~r~~~~~~ 272 (493)
T PRK15462 198 V-NKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRK---A-ENQKQRKELGLIVT 272 (493)
T ss_pred C-CCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c-CCHHHHhhHHHHHH
Confidence 0 00000000000 0 000 000000000000000000 0 0000000 0 000011111 1111
Q ss_pred HHHhHHHhhcchhHHHHhHHHHHHH------cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCC--cce-----eehh
Q 012627 239 LGIPAFQQLTGMNSILFYAPVIFQS------LGFGSGAALYSSVITGIALCIAALISMAFVDKFGR--RAF-----FLEA 305 (459)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~--~~~-----~~~~ 305 (459)
+.+.....+..+.-...-+..+.++ .|++ -...+..+...+..++.+++..++-.|..| |.. +..+
T Consensus 273 l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g 351 (493)
T PRK15462 273 LTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALG 351 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Confidence 1112222222222222222333332 1222 235667778888888888877777666633 221 3345
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHH-HHH
Q 012627 306 GTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNN-LLF 384 (459)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~~ 384 (459)
..+++++.+.+....... .+ ....+.+++ +...++........+|+....++++.|++.+|..+|+..... .++
T Consensus 352 ~~~~g~~f~~l~~~~~~~--~~--~~~~s~~wl-~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~ 426 (493)
T PRK15462 352 LGLMSAGFCILTLSARWS--AM--YGHSSLPLM-VLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIA 426 (493)
T ss_pred HHHHHHHHHHHHHHHhhc--CC--CCCcCHHHH-HHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 555555555544433211 11 111222333 333333444467788998999999999999999999986643 566
Q ss_pred HHHHHHHHHHH
Q 012627 385 TALIAQAFLAA 395 (459)
Q Consensus 385 ~~~~~~~~~~~ 395 (459)
..++..+.+..
T Consensus 427 ~~~~g~~~~~~ 437 (493)
T PRK15462 427 NYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHh
Confidence 66665555544
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-19 Score=162.86 Aligned_cols=351 Identities=15% Similarity=0.152 Sum_probs=212.0
Q ss_pred ccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHH--HHH-HHHHhh----hhHH-HHHHHHHHhhh
Q 012627 25 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFF--IGA-ILNACA----VHIS-MLLLGRIFLGM 96 (459)
Q Consensus 25 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~--~~~-~~~~~~----~~~~-~l~~~r~l~G~ 96 (459)
.-|+|.+++|.+.++..+...+.+++.|.++||+|.||-++..+.+.. .+. +...+. .|.+ ..+++-+..|+
T Consensus 37 ~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~ 116 (412)
T PF01306_consen 37 VAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGL 116 (412)
T ss_dssp HH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTT
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888999999999999999999999999997775544332222 122 222222 2332 23333344455
Q ss_pred hhhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcc-cCCC
Q 012627 97 GIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF-LPET 175 (459)
Q Consensus 97 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-l~e~ 175 (459)
......|+..+++.++. ++.+.-.|-..+..++|.+++..+++..... +-+..||+....+++..++.+. -|+.
T Consensus 117 ~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i---~p~~~fwi~s~~~~il~lll~~~~~~~ 191 (412)
T PF01306_consen 117 VFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI---NPNIIFWIASAAAIILLLLLLLLKPDV 191 (412)
T ss_dssp TTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHSS---S
T ss_pred HHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee---CccHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 55555666666666654 3455667777888888888888886554432 4567888777666655444333 3343
Q ss_pred hhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCch---hHHhhhcCCCchHHHHHHHhHHHhhcchhH
Q 012627 176 PNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPF---RNLFKKKNRPQLVIGALGIPAFQQLTGMNS 252 (459)
Q Consensus 176 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (459)
++....++..+ .++.+.+. .+++|.++.|...+.. ......+..
T Consensus 192 ~~~~~~~~~~~----------------------------~~~~~~~~~~~~~l~k~~~fw~~~l~v-----~g~~~~Y~v 238 (412)
T PF01306_consen 192 PPQAEVADALG----------------------------AKKDKVSLKDVLSLFKMRNFWFFVLFV-----IGVAAIYDV 238 (412)
T ss_dssp SSSS-SSTTSS----------------------------S------HHHHHHHTTSHHHHHHHHHH-----HHHHHHHHH
T ss_pred chhhhhhcccc----------------------------cCCCCCcHHHHHHHhcchhHHHHHHHH-----HHHHHHHHH
Confidence 32111100000 00011122 3444554433333222 222223444
Q ss_pred HHHhHHHHHHHcC----CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCC
Q 012627 253 ILFYAPVIFQSLG----FGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGK 328 (459)
Q Consensus 253 ~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (459)
+-...+.|...+- .+....|...+...+..++.-.+.+++.+|+|.|+.+.++..++.+-..+.++..
T Consensus 239 fdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~-------- 310 (412)
T PF01306_consen 239 FDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFAT-------- 310 (412)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----------
T ss_pred HHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhc--------
Confidence 4445566665532 2334578888888999999999999999999999999988888888877776653
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHH-HHHHHHHHHHHHHHHHHHHhhhhHH-HHHH
Q 012627 329 PLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVV-VCNNLLFTALIAQAFLAALCHLKFG-IFLV 406 (459)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 406 (459)
..+.....-.+-+.-+.....+. .-++++.+|++..++...+. +...+++..+.+.+.|.++|+.|+. .+++
T Consensus 311 -----~~~~i~~~klLH~~e~~l~lva~-fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tyli 384 (412)
T PF01306_consen 311 -----NPWVISLIKLLHALEFPLLLVAA-FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLI 384 (412)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----chHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHH
Confidence 23445555555555554444333 55678999999988888875 6788999999999999999999965 5666
Q ss_pred HHHHHHHHHHHHHHhcCCCCC
Q 012627 407 FGGLVVIMSAFIYFFLPETKQ 427 (459)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~ 427 (459)
.+.+.....++..+.++++++
T Consensus 385 mg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 385 MGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHHHheeeecCCCc
Confidence 666655555666666665444
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-20 Score=153.74 Aligned_cols=356 Identities=17% Similarity=0.108 Sum_probs=212.9
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcc-cccchhhhHHHHHHHHHHHHHH---hhhhHHHHHHHHHHhhhhh
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRS-RGRRASIMVGSVSFFIGAILNA---CAVHISMLLLGRIFLGMGI 98 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~ 98 (459)
..+.+++..+..++.+.|.....+.+++.|++.|| +|-|..-++-+....++.++++ ..+.+|.+..+|++.|+|.
T Consensus 71 k~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGg 150 (459)
T KOG4686|consen 71 KLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGG 150 (459)
T ss_pred hcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCc
Confidence 44455566677999999999999999999999996 5877766666666667776665 4689999999999999998
Q ss_pred hhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhcccc-----ccCchhhHH---HHhhHHHHHHHHHHhc
Q 012627 99 GFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEK-----IHPWGWRLS---LGLATVPATLMFVGGL 170 (459)
Q Consensus 99 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~-----~~~~gwr~~---f~~~~~~~~~~~~~~~ 170 (459)
-..-.+-..+..-|+..||.+.++|+.....-+|..+--.+-..... ....|-... ..+....+....+...
T Consensus 151 ESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical 230 (459)
T KOG4686|consen 151 ESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICAL 230 (459)
T ss_pred hhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999988888776544322111110 000010000 0000001111111110
Q ss_pred ccCCChhhHHhcCC-HHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcc
Q 012627 171 FLPETPNSLVEQGK-LDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTG 249 (459)
Q Consensus 171 ~l~e~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (459)
..+. ++.+++.+.+-++. ..+.....+... +.+-...+. +..++....
T Consensus 231 ----------~lg~~D~rAerilh~e~g~-----------------~Ge~pkLtdv~~---f~ppfw~~~-iicv~yyva 279 (459)
T KOG4686|consen 231 ----------SLGLSDDRAERILHLEEGF-----------------LGEEPKLTDVNT---FYPPFWVLV-IICVLYYVA 279 (459)
T ss_pred ----------HhhhhhhHHHHHHhhhcCc-----------------ccCCcccccccc---cCccHHHHH-HHHHHHHHH
Confidence 0000 01111111110000 000011111111 111111111 233333444
Q ss_pred hhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCC
Q 012627 250 MNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGK 328 (459)
Q Consensus 250 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (459)
...+....|.++++ +|+|+..++.+.+.......+.+++.|.++||.|++-..+.+..+..+..-....+..
T Consensus 280 ~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~------- 352 (459)
T KOG4686|consen 280 WFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF------- 352 (459)
T ss_pred HHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh-------
Confidence 44555666777765 9999999999999989999999999999999999987766554443333222222211
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh-H---HHH
Q 012627 329 PLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK-F---GIF 404 (459)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~ 404 (459)
.+++. ...+.+..+.+.. ...|..++.+.|.++.|++.|.++++.++|-.+.+.+.+.+.|+.+ + ..+
T Consensus 353 ----lsPy~---~m~~lGLsysllA-cslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~f 424 (459)
T KOG4686|consen 353 ----LSPYT---SMTFLGLSYSLLA-CSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAF 424 (459)
T ss_pred ----ccHHH---HHHHHhhhHHHHH-HHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHH
Confidence 11222 2333333333222 1125556788899999999999999999999999999999988765 2 344
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 012627 405 LVFGGLVVIMSAFIYFFLPE 424 (459)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~ 424 (459)
++..+.+.+....+.+.+.+
T Consensus 425 fl~~~~~aL~svgil~~~N~ 444 (459)
T KOG4686|consen 425 FLIIGLMALTSVGILFYLNK 444 (459)
T ss_pred HHHHHHHHHHHHHHHhheec
Confidence 44444444444444444433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-17 Score=144.63 Aligned_cols=353 Identities=14% Similarity=0.057 Sum_probs=235.2
Q ss_pred chhHHHHHHHhHHHHHHHHHHhhhhhcccccchhh-hHHHHHHHHHHHHHHhhhh---HHHHHHHHHHhhhhhhhhcchh
Q 012627 30 NQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASI-MVGSVSFFIGAILNACAVH---ISMLLLGRIFLGMGIGFGNQAV 105 (459)
Q Consensus 30 ~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~-~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~g~~~~~~ 105 (459)
.+..+...++..+..++.+|+.|.++|+.|+||.. -....+..+++.+..++++ ++..++.-.+..++.......-
T Consensus 57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy 136 (438)
T COG2270 57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY 136 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence 56678999999999999999999999999976654 4555556666666666654 4555666688889999999999
Q ss_pred hHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccc----------------cccCchhhHHHHhhHHHHHHH-HHH
Q 012627 106 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTE----------------KIHPWGWRLSLGLATVPATLM-FVG 168 (459)
Q Consensus 106 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~----------------~~~~~gwr~~f~~~~~~~~~~-~~~ 168 (459)
.+++.+..++++-++..++-.....+|..+.-++..... ..+...=|..+.+.++..++. +.+
T Consensus 137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm 216 (438)
T COG2270 137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM 216 (438)
T ss_pred hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence 999999999988777776665555555555444321110 013345688888888877665 444
Q ss_pred hcccCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhc
Q 012627 169 GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 248 (459)
Q Consensus 169 ~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (459)
++.+|+.++-. .+...+ -...-++.+.+++++.+++.....+ +..+...-
T Consensus 217 ~~~v~~~~~~~---~~~~~~----------------------l~~g~k~L~~t~k~i~~~~~i~~FL-----iA~~~~~D 266 (438)
T COG2270 217 ILNVHDAEKIS---SPPPTA----------------------LRNGFKELKSTFKEIRGRKNLVLFL-----IARFFYID 266 (438)
T ss_pred Hhccccccccc---ccchHH----------------------HHHHHHHHHHHHHHHhcccchHHHH-----HHHHHHHh
Confidence 56677655310 000000 0011122244455655555322222 34455555
Q ss_pred chhHHHHhHHHHHH-HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCC
Q 012627 249 GMNSILFYAPVIFQ-SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEG 327 (459)
Q Consensus 249 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (459)
+.+........+-. ++|++..+..++.....+..++|+++.|++.||+|.|+++..+.++..+..+...+..
T Consensus 267 Gv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~------- 339 (438)
T COG2270 267 GVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE------- 339 (438)
T ss_pred hHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc-------
Confidence 66667777777776 6999999999999999999999999999999999999888776665554444433321
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHH
Q 012627 328 KPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK-FGIFLV 406 (459)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 406 (459)
.. ........+.+...+... ...-.+..+.+|+++.+...|+++..+......+|..++.+.+..+ ...-+.
T Consensus 340 ----~~--~~f~i~gll~g~s~G~~q-A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~ 412 (438)
T COG2270 340 ----GE--LDFWILGLLVGTSLGGAQ-ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVL 412 (438)
T ss_pred ----cc--HHHHHHHHHHHHhcchHH-HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHH
Confidence 11 112222233333333222 3446667899999999999999999999999999999999988766 333444
Q ss_pred HHHHHHHHHHHHHHhcCCCC
Q 012627 407 FGGLVVIMSAFIYFFLPETK 426 (459)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~ 426 (459)
...+..+++++.++..|..+
T Consensus 413 ~i~vll~iGl~~L~~v~~~~ 432 (438)
T COG2270 413 SIIVLLLIGLLLLLRVKVPG 432 (438)
T ss_pred HHHHHHHhhHhhEEeecCCC
Confidence 44555556666666666553
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-18 Score=154.28 Aligned_cols=276 Identities=14% Similarity=0.097 Sum_probs=185.1
Q ss_pred HhhhhHHHHHHHHHHhhhhhhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhcccccc-----------
Q 012627 79 ACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH----------- 147 (459)
Q Consensus 79 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~----------- 147 (459)
+...+|+.+++.-++.|.|.+...+....++++..+++++++.+++.+...++|..++|.++.......
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 356789999999999999999999999999999999999999999999999999999999976544211
Q ss_pred ---CchhhHHHHhhHHHHHHHHHHhcc--cCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCch
Q 012627 148 ---PWGWRLSLGLATVPATLMFVGGLF--LPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPF 222 (459)
Q Consensus 148 ---~~gwr~~f~~~~~~~~~~~~~~~~--l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (459)
...|+++|++.+...++..+.+.+ +||.++ ++.++. ..+ + ....
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~~~~~-----------------------~~~-~--~~~~ 133 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----ADVARV-----------------------SSG-D--TTQK 133 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----cccccc-----------------------ccc-c--ccch
Confidence 147999999777665555444333 455321 000000 000 0 0001
Q ss_pred hHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHHHH---cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 012627 223 RNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS---LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRR 299 (459)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 299 (459)
++.++++. . .... +..++..........|.+.|+++ +|+++.+.+........+.++|+++.+++.||+++|
T Consensus 134 ~~~~~~~~---~-~l~~-~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~ 208 (310)
T TIGR01272 134 TSAFQFTH---L-VLGA-LGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQG 208 (310)
T ss_pred hhHHhhHH---H-HHHH-HHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 12222221 1 1222 44555555667788899999964 589999999999999999999999999999999998
Q ss_pred ceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHH
Q 012627 300 AFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVC 379 (459)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 379 (459)
+.+..+..+..++.++.... +.. . ......+.+++.+..++.. .....+..|++ .+++.++. .
T Consensus 209 ~~l~~~~~l~~~~~~l~~~~-----------~~~--~-~~~~~~l~g~~~s~i~P~~-~s~a~~~~~~~-~~~asai~-~ 271 (310)
T TIGR01272 209 RYLAFNAFLAVLLSIGAALT-----------HGY--V-AMWFVLALGLFNSIMFPTI-FSLALNALGRH-TSQGSGIL-C 271 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHc-----------CCH--H-HHHHHHHHHHHHHHHHHHH-HHHHHhhhhhh-hhhhHHHH-H
Confidence 87766555444443222211 111 1 1223334555555555443 44445666654 45666664 6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 012627 380 NNLLFTALIAQAFLAALCHLKFGIFLVF 407 (459)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (459)
.+.+|+.+.|.+.|.+.|..+....+..
T Consensus 272 ~~~~Gg~i~P~l~G~lad~~g~~~a~~v 299 (310)
T TIGR01272 272 LAIVGGAIVPLLQGSLADCLGIQLAFAL 299 (310)
T ss_pred HHHhcchHHHHHHHHHHHhccchHHHHH
Confidence 7889999999999999998775544443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.2e-18 Score=149.48 Aligned_cols=364 Identities=13% Similarity=0.097 Sum_probs=235.2
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhh------hhHH--HHHHHHHHh
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA------VHIS--MLLLGRIFL 94 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~------~~~~--~l~~~r~l~ 94 (459)
+++|| +.+..-|+..+|.+.+....+++-|+.|++|-|....++..+..++..+-..+ +.++ ....+..+.
T Consensus 72 ~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~ia 150 (480)
T KOG2563|consen 72 NSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIA 150 (480)
T ss_pred HHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHH
Confidence 34455 66677899999999999999999999999999999999999999999987665 3455 777888888
Q ss_pred hhhhhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhcccccc----CchhhH--HHHhhHHHHHHHHHH
Q 012627 95 GMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH----PWGWRL--SLGLATVPATLMFVG 168 (459)
Q Consensus 95 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~----~~gwr~--~f~~~~~~~~~~~~~ 168 (459)
+.++-.....-..+..-||+++||..+..+-.++..+|.++|.++........ ...|.. .|+....++.+.+++
T Consensus 151 a~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l 230 (480)
T KOG2563|consen 151 AAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLAL 230 (480)
T ss_pred HHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877888999999999999999999988888888877754444333 345665 355444444444333
Q ss_pred h-cccCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhh
Q 012627 169 G-LFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQL 247 (459)
Q Consensus 169 ~-~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (459)
. +..++.|+...+..+.. ..+.+...+.++.++++.+-. .. +.+....
T Consensus 231 ~~~~~~~~P~tPps~s~~~--------------------------~~~~~f~~si~~~~~n~~F~i----l~-~~ygi~~ 279 (480)
T KOG2563|consen 231 VLFVFTKKPPTPPSASQAA--------------------------LQDASFPKSIKSCFKNRQFII----LA-ICYGIGL 279 (480)
T ss_pred HHHhcCCCCCCCCchhHhh--------------------------hhcCcHHHHHHHHHcCccHHH----HH-HHHhhhH
Confidence 2 22333332111100000 001112334556666554221 11 3344444
Q ss_pred cchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhh-HHHHHHHHHHHHHHHHHhcC
Q 012627 248 TGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAG-TEMIIYMVIVAITLALEFGE 326 (459)
Q Consensus 248 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 326 (459)
..++...+.+...+...|++...+|.......+++++++.+.|.+.||.++-+...... ....++...+.... .
T Consensus 280 g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t-~---- 354 (480)
T KOG2563|consen 280 GLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCT-L---- 354 (480)
T ss_pred HHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh-c----
Confidence 44455555444444456777788999999999999999999999999987655433222 22222211111111 0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh----HH
Q 012627 327 GKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK----FG 402 (459)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 402 (459)
.....+........++. +..+..|+..-+..|..-+..-++..|+.+..+++.+.+...+.+...+..+ +.
T Consensus 355 ----~~~~~viv~~t~~~~g~-~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~ 429 (480)
T KOG2563|consen 355 ----FLGDSVIVFTTCGLLGF-FGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTF 429 (480)
T ss_pred ----cCCceEehhhhHHHHHH-hhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCc
Confidence 11112223333333333 3456667878887888766667888999999999999999999998887665 44
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCC
Q 012627 403 IFLVFGGLVVIMSAFIYFFLPETKQV 428 (459)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (459)
...+......+....+..+.++..++
T Consensus 430 ~~~i~~~~~~~l~~~lva~~r~~y~R 455 (480)
T KOG2563|consen 430 PANIFLTVSALLGAILVAFFRPDYRR 455 (480)
T ss_pred cchhHhHHHHHHHHHHHhhhhhhHHh
Confidence 44455555555555555555554433
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.9e-16 Score=139.12 Aligned_cols=360 Identities=17% Similarity=0.118 Sum_probs=212.9
Q ss_pred cccCchhHHHHHHHhHHHHHHHHHHhhhhhccc-ccchhhhHHHHHHHHHHHHHHhhh--hHHHHHHHHHHhhhhhhhhc
Q 012627 26 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-GRRASIMVGSVSFFIGAILNACAV--HISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 26 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~ 102 (459)
.|+|+++..-+.+.|.--.-+...++|+++||+ |+|+.+..|.++..++.++.+.++ +...+.++-.+.++|.|..=
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 667777778888888777778899999999997 999999999999999999999884 78899999999999999999
Q ss_pred chhhHHHHhcCCCc--cchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCC----Ch
Q 012627 103 QAVPLYLSEMAPAK--IRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPE----TP 176 (459)
Q Consensus 103 ~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e----~p 176 (459)
+...++++|.+|++ +|-..++++.++.++|..++|++ .....+..||...|...++-....++..+..+. ++
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i--~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~ 213 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPII--TGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIG 213 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHH--HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCC
Confidence 99999999999864 47888999999999999999999 444445568999999988877766554433321 11
Q ss_pred hhHHhc-CCHHHHHHHHHHH-----cCC--C-cchHHHHHHHHHH--HHHh---hhcCchhHHhhhcCCCchHHHHH---
Q 012627 177 NSLVEQ-GKLDEARKVLEKV-----RGT--A-NVDAEFSDLIDAS--NAAR---AIKNPFRNLFKKKNRPQLVIGAL--- 239 (459)
Q Consensus 177 ~~~~~~-~~~~~~~~~~~~~-----~~~--~-~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~--- 239 (459)
...... .+..+........ ... . ............. .... .+..+..+.. +.+.|....+.+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~er~r~~~~~~Lfl~ 292 (498)
T COG3104 214 GVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF-DERRRLLAAIPLFLF 292 (498)
T ss_pred CCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-HHHHHHHHHHHHHHH
Confidence 000000 0111111100000 000 0 0000000000000 0000 0000001100 001111111111
Q ss_pred -HHhHHHhhcchhHHHHhHHHHHHH--cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCc--cee-----ehhhHHH
Q 012627 240 -GIPAFQQLTGMNSILFYAPVIFQS--LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRR--AFF-----LEAGTEM 309 (459)
Q Consensus 240 -~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~-----~~~~~~~ 309 (459)
.+.+.++.-....+..|.....++ +|++ -...+..+...+.-++..++..++..+.+++ .+. ..+..++
T Consensus 293 ~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~-vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~ 371 (498)
T COG3104 293 AVIFWALYEQMGSSLNLYADRNVNRQIFGFE-VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILA 371 (498)
T ss_pred HHHHHHHHHhccchHHHHHHHhhccccccee-cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHH
Confidence 112222222223333333333321 2322 3456777888888888888888888885443 222 2233333
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHH
Q 012627 310 IIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIA 389 (459)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~ 389 (459)
..+.+++.........+ .+ ..+..+.+...+......+..+|+...++..+.|+...+..++........+..++.
T Consensus 372 g~~fl~l~~~~~~~~~~---~~-~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g 447 (498)
T COG3104 372 GLGFLILLLAGIWFGGP---SG-LVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGG 447 (498)
T ss_pred HHHHHHHHHHHHhhcCC---CC-CcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333333332221111 11 222333344444444457788888888889999999999999988888777777777
Q ss_pred HHHH
Q 012627 390 QAFL 393 (459)
Q Consensus 390 ~~~~ 393 (459)
.+.+
T Consensus 448 ~va~ 451 (498)
T COG3104 448 QVAG 451 (498)
T ss_pred eecc
Confidence 7666
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-16 Score=151.72 Aligned_cols=171 Identities=18% Similarity=0.173 Sum_probs=129.1
Q ss_pred cccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHH---HHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 26 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAIL---NACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 26 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
+|.+..+.++..+...++..++.+.+|+++||+|||+++..+.++..++.+. ...+++...++++|++.|++.+...
T Consensus 281 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 360 (490)
T PRK10642 281 LHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFT 360 (490)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 4556666788888889999999999999999999999988887654443332 2234567788889999998888777
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCChhhHHhc
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQ 182 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~~~~ 182 (459)
.....++.|.+|++.|++++++......++..++|.+....... ..+|+.++++..+++++.++..+++||+|+|+.++
T Consensus 361 g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~-~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~ 439 (490)
T PRK10642 361 GVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVES-TQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKG 439 (490)
T ss_pred HHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCC
Confidence 77888899999999999999974444445556677664333221 12478777777777777766667789999998765
Q ss_pred -----CCHHHHHHHHHHHcC
Q 012627 183 -----GKLDEARKVLEKVRG 197 (459)
Q Consensus 183 -----~~~~~~~~~~~~~~~ 197 (459)
+|.+|+++.+++++.
T Consensus 440 ~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 440 ATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred ccccccchhhHHHHhhcccc
Confidence 888999999988873
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.9e-14 Score=125.51 Aligned_cols=329 Identities=12% Similarity=0.058 Sum_probs=206.4
Q ss_pred ccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccc-----cchhhhH-HHHHHHHHHHHHHhh-----h-------hH--
Q 012627 25 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRG-----RRASIMV-GSVSFFIGAILNACA-----V-------HI-- 84 (459)
Q Consensus 25 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~G-----rr~~~~~-~~~~~~~~~~~~~~~-----~-------~~-- 84 (459)
+++++....+.+.+++++... ..+.+|+.+|+.+ ||..+++ |.++...+..+.+++ . +.
T Consensus 9 EL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~ 87 (403)
T PF03209_consen 9 ELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWL 87 (403)
T ss_pred HhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHH
Confidence 456778888888888887765 5889999999999 7766554 566655555555443 2 12
Q ss_pred --HHHHHHHHHhhhhhhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHh--hHH
Q 012627 85 --SMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGL--ATV 160 (459)
Q Consensus 85 --~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~--~~~ 160 (459)
....+.-.+.|+|.+....+..++++|..|+++|+++.++.....-+|.+++..+...... +...-|..-.+ .++
T Consensus 88 g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~-~~s~~rL~~v~~~~a~ 166 (403)
T PF03209_consen 88 GLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLD-PFSPERLIQVIQGVAL 166 (403)
T ss_pred HHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcc-ccCHHHHHHHHHHHHH
Confidence 2344555788999999999999999999999999999999999999999999988433322 11122322222 222
Q ss_pred HHHHHHHHhcccCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHH
Q 012627 161 PATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALG 240 (459)
Q Consensus 161 ~~~~~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (459)
+.+...++..+=.|.+.....+. .++++...+..++++..++..++....++
T Consensus 167 i~~~l~~ia~wg~E~r~~~~~~~---------------------------~~~~~~~f~~a~~~~~~~~~a~~f~~fl~- 218 (403)
T PF03209_consen 167 IALLLNLIALWGQEPRRSRRAAA---------------------------AERPRPPFREAWRQVWASPQARRFFVFLF- 218 (403)
T ss_pred HHHHHHHHHHHhcccCCcccccC---------------------------CCCCCccHHHHHHHHHhCCChhHHHHHHH-
Confidence 22222222222223221000000 00011111233556666666555554333
Q ss_pred HhHHHhhcchhHHHHhHHHHH-HHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHH-HhCCcceeehhhHHHHHHHHHHHH
Q 012627 241 IPAFQQLTGMNSILFYAPVIF-QSLGFGSGAALYSSVITGIALCIAALISMAFVD-KFGRRAFFLEAGTEMIIYMVIVAI 318 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~~~~~ 318 (459)
.....+...-..+..|- +-+|++..+...++...+.+.+++....+++.. |.++++....+.....+++.++..
T Consensus 219 ----l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~ 294 (403)
T PF03209_consen 219 ----LGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIIL 294 (403)
T ss_pred ----HHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 12222222323333333 337999999999999999999999999998776 566666666666666666655554
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012627 319 TLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCH 398 (459)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 398 (459)
.... ...+.+.....+++++.+.........+ .+..+++..|..+|.....+.+...++....+.+.|.
T Consensus 295 a~~~----------~~~~~~~~~~~l~G~g~G~f~vgals~m-M~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 295 AGPL----------GSPWLFRPGVFLLGLGNGLFTVGALSLM-MDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred HHhc----------ccchHHHHHHHHHHHhhhHHHHHHHHHH-HhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4311 2244555555555555554433332333 4788888889999999999999888888888887764
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-15 Score=140.07 Aligned_cols=362 Identities=15% Similarity=0.134 Sum_probs=210.2
Q ss_pred cccCchhHHHHHHHhHHHHHHHHHHhhhhhccccc-chhhhHHHHHHHHHHHHH-Hhh---h-hHHHHHHHHHHhhhhhh
Q 012627 26 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR-RASIMVGSVSFFIGAILN-ACA---V-HISMLLLGRIFLGMGIG 99 (459)
Q Consensus 26 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~~~-~~~---~-~~~~l~~~r~l~G~~~g 99 (459)
-+.+.+..|++.++..++.+++++..|+...|.+. |+.++.+.++..+++++. ++. + ..+.++++|++.|+|.|
T Consensus 66 ~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~ 145 (488)
T KOG2325|consen 66 PTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG 145 (488)
T ss_pred CCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc
Confidence 45567777999999999999999999999999996 888999999999999887 433 3 67899999999999987
Q ss_pred hhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCch-----------hhHHHHhhHHHHHHHHHH
Q 012627 100 FGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWG-----------WRLSLGLATVPATLMFVG 168 (459)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~g-----------wr~~f~~~~~~~~~~~~~ 168 (459)
......+|+++....++|.++++....+..+|.++||.++.........| +..+-|+.+++.++.++.
T Consensus 146 -n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~ 224 (488)
T KOG2325|consen 146 -NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVI 224 (488)
T ss_pred -cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHH
Confidence 45778899999999999999999999999999999988854433222211 345667777777776554
Q ss_pred -hcccCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcC-CCchHHHHHHHhHHHh
Q 012627 169 -GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKN-RPQLVIGALGIPAFQQ 246 (459)
Q Consensus 169 -~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 246 (459)
.++++|.++...+++..++ ++.+.+ ++..+.++ .+...+.++ +..+..
T Consensus 225 i~~~f~E~~~~~~~~~~~~~---------------------~~~~~~--------~~~~~~~~~d~~~~~vc~-~~~~~~ 274 (488)
T KOG2325|consen 225 ILFFFKEVYRGIIDKKKRSV---------------------EEEKSD--------IEKVKKPKLDWVAVLVCI-FLRFVV 274 (488)
T ss_pred HHhheeecccCccccccccc---------------------hhhccc--------hhhhccCChhHHHHHHHH-HHHHHH
Confidence 4557776642211111100 000000 01111111 111122222 233333
Q ss_pred hcchhH-HHHhHHHHHHHcCCCCCchh----HHHHHHHHHHHHHHHHHHHHH-HHhCCcceeehhhHHHHHHHHHHHHHH
Q 012627 247 LTGMNS-ILFYAPVIFQSLGFGSGAAL----YSSVITGIALCIAALISMAFV-DKFGRRAFFLEAGTEMIIYMVIVAITL 320 (459)
Q Consensus 247 ~~~~~~-~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~g~l~-d~~g~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
...+.. .....+.....++++.+++- ......++......+...... .++.+|+.+..+.........+.....
T Consensus 275 ~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~ 354 (488)
T KOG2325|consen 275 NFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPW 354 (488)
T ss_pred HHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeec
Confidence 333333 23334444455777666543 333333333333323222222 233445555544333332222221111
Q ss_pred HHHhcCCCC--------CCchhHH---------HHHHH--HHHHHHHHhhcccccceeeecccCCcccccccchHHHHHH
Q 012627 321 ALEFGEGKP--------LPKGIGI---------FLVIV--ICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNN 381 (459)
Q Consensus 321 ~~~~~~~~~--------~~~~~~~---------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 381 (459)
......... ......| ..... ..+++.++-....+... ..+|+..+..+++..|+.....
T Consensus 355 ~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~t-lySkiLgp~~q~~~qg~~~~~~ 433 (488)
T KOG2325|consen 355 GFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDT-LYSKILGPRDQGTMQGVFSISG 433 (488)
T ss_pred cccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHH-HHHHHhCCccccceeEEEEecc
Confidence 111100000 0001111 11111 11222222222222333 3478888999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 012627 382 LLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIY 419 (459)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (459)
..+..++|.+........|....+.+..+..++...++
T Consensus 434 s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~ 471 (488)
T KOG2325|consen 434 SIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALW 471 (488)
T ss_pred chhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHH
Confidence 99999999999998888887777766665555554443
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-15 Score=142.49 Aligned_cols=284 Identities=15% Similarity=0.157 Sum_probs=196.9
Q ss_pred CccccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhh-----------------
Q 012627 20 LTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV----------------- 82 (459)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~----------------- 82 (459)
.+.++.|+++.++.|++.+.+=++..+...+..+..-|.-|-+++-+|+++++++++++++-+
T Consensus 121 ttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~ 200 (735)
T KOG3626|consen 121 TTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSV 200 (735)
T ss_pred hhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccc
Confidence 345888999999999999999999999999999999999999999999999999999987631
Q ss_pred --h--------------------------------H-HHHHHHHHHhhhhhhhhcchhhHHHHhcCCCccchhHHHHHHH
Q 012627 83 --H--------------------------------I-SMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQL 127 (459)
Q Consensus 83 --~--------------------------------~-~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 127 (459)
+ + ..++++.++.|+|....++...+|+-|...+++-...+|+...
T Consensus 201 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~ 280 (735)
T KOG3626|consen 201 ENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYS 280 (735)
T ss_pred cCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHH
Confidence 0 2 2677788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccc------cC-----------chhhHHHHhhHHHHHHHHHHhcccCCChhhHHhcCCHHHHHH
Q 012627 128 TTCLGILVANLINYGTEKI------HP-----------WGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARK 190 (459)
Q Consensus 128 ~~~~G~~lg~~~~~~~~~~------~~-----------~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~~~~~~~~~~~~ 190 (459)
...+|.++|-+++.+.... .. --|..-|++.+.+.++..+..+++|...+.. .+..+++
T Consensus 281 ~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~---~~~~~~~- 356 (735)
T KOG3626|consen 281 MAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKS---QKRKRAR- 356 (735)
T ss_pred HHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccc---cccchhh-
Confidence 9999999998887554211 00 1377788888888888877777777654211 1100000
Q ss_pred HHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHHHH-cCCCCC
Q 012627 191 VLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSG 269 (459)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~ 269 (459)
+.+...+.+...++.....+..++.....+.+++++. .+..+ +...+....+....+|+|.|++. +|.++.
T Consensus 357 ---~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~i----f~~~~-l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas 428 (735)
T KOG3626|consen 357 ---DLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPI----FMLVV-LASVIESLAITGYITFLPKYLETQFGISAS 428 (735)
T ss_pred ---hhcccccccccccCCcchhhhHHHHHHHHHHHhcCch----HHHHH-HHHHHHHHHHhhHHHhhHHHHHHHcCCCHH
Confidence 0000000000000000000111222333455555543 33333 56667777888899999999975 999998
Q ss_pred chhHHHHHHHH-HHHHHHHHHHHHHHHhCC--cceeehhhHHHHHHHHH
Q 012627 270 AALYSSVITGI-ALCIAALISMAFVDKFGR--RAFFLEAGTEMIIYMVI 315 (459)
Q Consensus 270 ~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~--~~~~~~~~~~~~~~~~~ 315 (459)
.+..+....++ +..+|.+++|++.+|+.. |....+..+...+.+++
T Consensus 429 ~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 429 LANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLF 477 (735)
T ss_pred HHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence 88888755554 445778899999998763 33333333333333333
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=120.69 Aligned_cols=137 Identities=22% Similarity=0.364 Sum_probs=120.0
Q ss_pred HHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcchhhHHHHhcCCC
Q 012627 36 FTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPA 115 (459)
Q Consensus 36 ~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~ 115 (459)
+.+.+.++..++.++.|++.||+|||+.+..+..+..++.+.....++++.+.+.+++.|++.+...+....++.|.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (141)
T TIGR00880 3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP 82 (141)
T ss_pred EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence 34567788899999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHh-cccCC
Q 012627 116 KIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPE 174 (459)
Q Consensus 116 ~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~l~e 174 (459)
++|++..++......+|..+++.++.... +..+|++.+++.+...++..+.. ++.||
T Consensus 83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 83 EERGVALGLMSAGIALGPLLGPPLGGVLA--QFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhhHHHHHHHHhHHHHHHHhHHhHHHHh--cccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999955443 45679999999888777765554 34555
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-17 Score=157.24 Aligned_cols=368 Identities=17% Similarity=0.147 Sum_probs=3.0
Q ss_pred ccccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhh------------------
Q 012627 21 TETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV------------------ 82 (459)
Q Consensus 21 ~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~------------------ 82 (459)
+.|+.|++++++.|++.+.+-++..+..++..++.+|..|-|.+-+|.++.+++++++++-+
T Consensus 28 tiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~ 107 (539)
T PF03137_consen 28 TIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNS 107 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccc
Confidence 56889999999999999999999999999999999998888899999999999999886520
Q ss_pred --------------------------------hHHHHHHHHHHhhhhhhhhcchhhHHHHhcCCCccchhHHHHHHHHHH
Q 012627 83 --------------------------------HISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTC 130 (459)
Q Consensus 83 --------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 130 (459)
-++.++++.++.|+|....++...+|+-|..++++-+..+|+..+...
T Consensus 108 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~ 187 (539)
T PF03137_consen 108 SISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSI 187 (539)
T ss_dssp --------------------------------------------SSS---------------------------------
T ss_pred ccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhh
Confidence 035788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccc----c------------C----chhhHHHHhhHHHHHHHHHHhcccCCC-hhhHHhcCCHHHHH
Q 012627 131 LGILVANLINYGTEKI----H------------P----WGWRLSLGLATVPATLMFVGGLFLPET-PNSLVEQGKLDEAR 189 (459)
Q Consensus 131 ~G~~lg~~~~~~~~~~----~------------~----~gwr~~f~~~~~~~~~~~~~~~~l~e~-p~~~~~~~~~~~~~ 189 (459)
+|.++|-++++..... . + -.|..-|++.+...++..+..+++|+. |... +..++.+
T Consensus 188 lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~---~~~~~~~ 264 (539)
T PF03137_consen 188 LGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTS---ERQEEKE 264 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcc---cccchhh
Confidence 9999998886544321 0 0 126666777777766665555556543 3210 0000000
Q ss_pred HHHHHHcCCCcchHHHHHHHH---HHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHHHH-cC
Q 012627 190 KVLEKVRGTANVDAEFSDLID---ASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LG 265 (459)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g 265 (459)
...++ ..+..+.+.++..+ .....++.....+++++++. .+... +...........+.++.|.|++. ++
T Consensus 265 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~----f~~~~-la~~~~~~~~~G~~tF~pKylE~QF~ 337 (539)
T PF03137_consen 265 SSERK--EEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPV----FMCLI-LAGVFESFIVSGFATFLPKYLESQFG 337 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhcc--hhhhhhhcccccccccchhhhhhhHHHHHHHHhcChH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 00000 00000000000000 00111222333444555443 22222 55566666777889999999975 89
Q ss_pred CCCCchhHHHHHHHH-HHHHHHHHHHHHHHHhC--CcceeehhhHHHHHHHHHHHHHHHHH------------hc-----
Q 012627 266 FGSGAALYSSVITGI-ALCIAALISMAFVDKFG--RRAFFLEAGTEMIIYMVIVAITLALE------------FG----- 325 (459)
Q Consensus 266 ~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~----- 325 (459)
.++.++.++.....+ +.++|.+++|++.+|++ .|+..........+..++........ ..
T Consensus 338 ~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~ 417 (539)
T PF03137_consen 338 LSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSS 417 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCC
Confidence 999888877765554 66688899999999985 34444444444444333311111110 00
Q ss_pred -C-C---------------------CCCC-chhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHH
Q 012627 326 -E-G---------------------KPLP-KGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNN 381 (459)
Q Consensus 326 -~-~---------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 381 (459)
. . .+.+ .......++...+..+..+....|..... -..+|+++|+.+.|+...+.
T Consensus 418 ~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~-LR~V~~~~rs~AlGv~~~~~ 496 (539)
T PF03137_consen 418 SPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLIT-LRCVPPEQRSFALGVQWLII 496 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheee-eccCChhhcchhhhHHHHHH
Confidence 0 0 0000 01112222333333334444455554444 48889999999999997665
Q ss_pred H-HHHHHHHHHHHHHHhhh
Q 012627 382 L-LFTALIAQAFLAALCHL 399 (459)
Q Consensus 382 ~-~~~~~~~~~~~~~~~~~ 399 (459)
. +|..-+|.++|.+.|..
T Consensus 497 rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 497 RLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp -------------------
T ss_pred HhhcCcchHHHHhHHHhhh
Confidence 5 46678999999999864
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.9e-14 Score=131.36 Aligned_cols=317 Identities=13% Similarity=0.098 Sum_probs=199.1
Q ss_pred hHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh--hhhcchhhHHHHhcCCCcc
Q 012627 40 LYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGI--GFGNQAVPLYLSEMAPAKI 117 (459)
Q Consensus 40 ~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~--g~~~~~~~~~i~~~~~~~~ 117 (459)
..+...+.++..|.++||+|||..+...++...+..++..+.. +|.++ +.|+.. +.......++++|....++
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~ 145 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEE 145 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhH
Confidence 3567788899999999999999999999998888888877766 44433 444332 3456778889999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hcccCCChhhHHhcCCHHHHHHHHHHHc
Q 012627 118 RGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKLDEARKVLEKVR 196 (459)
Q Consensus 118 r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p~~~~~~~~~~~~~~~~~~~~ 196 (459)
|...+++.......+..++|.++..... ..|.-..|.+..+..++..+. ..++||+-... +.++ .......
T Consensus 146 R~~~~gll~~~~~~~~~~~p~~~~~~~~--~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~----~~~~--~~~~~~~ 217 (463)
T KOG2816|consen 146 RSSSIGLLSGTFGAGLVIGPALGGYLVK--FLGIALVFLIAAASGILSLLYMLLFLPESLQEK----ERSD--ATLRELT 217 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH--hcCchHHHHHHHHHHHHHHHHHhhccccccCcc----cccc--ccccccC
Confidence 9999999999999999999999554443 356778888888888877655 56689874211 1110 0000000
Q ss_pred CCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHHH-HcCCCCCchhHHH
Q 012627 197 GTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ-SLGFGSGAALYSS 275 (459)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~ 275 (459)
... ....+..+.++...+....+..+..+. ...+..........-..+.+++ .++++..+.+.+.
T Consensus 218 ~~~-------------~~~~~~~~~~~~~~~~~~~r~~l~l~l-~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~ 283 (463)
T KOG2816|consen 218 PGS-------------LDSSHVADAFQSLTKVGPDRLLLLLLL-VAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLL 283 (463)
T ss_pred CCc-------------ccchhhhhhhhhhcccCCCccchHHHH-HHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHH
Confidence 000 000001111222222222222222111 1111111111111101133343 3799999999888
Q ss_pred HHHHHHHHHHHHHHH-HHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhccc
Q 012627 276 VITGIALCIAALISM-AFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWG 354 (459)
Q Consensus 276 ~~~~~~~~~~~~~~g-~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (459)
+..+....++.++.. .+...++.|+....+.....+.....++.. ..|........ .+......
T Consensus 284 ~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~-------------~~w~~~~~~v~--~~~~~~~~ 348 (463)
T KOG2816|consen 284 SLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT-------------ETWMMFAAGVV--VALAGIVF 348 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc-------------cchhhhHHHHH--HHhhcchh
Confidence 888888888887776 777778888866666666666666665542 11222222111 11222333
Q ss_pred ccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012627 355 PLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCH 398 (459)
Q Consensus 355 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 398 (459)
|......+...+++.+|++.++...+..+...++|.+++.+...
T Consensus 349 pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 349 PAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred HHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 44455666778889999999999999999999999999988643
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.8e-14 Score=138.52 Aligned_cols=141 Identities=14% Similarity=0.015 Sum_probs=122.6
Q ss_pred HHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcchhhHHHHhc
Q 012627 33 LTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEM 112 (459)
Q Consensus 33 ~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 112 (459)
..+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++...+++.+++.|++.++.++...++++|+
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL 676 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777889999999999999999999999999999999999999998888899999999998888999999999999
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCCh
Q 012627 113 APAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETP 176 (459)
Q Consensus 113 ~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p 176 (459)
+|.++|++++|+..+...+|.++||.++...... +...+|++.++..++..++.+++||+.
T Consensus 677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~---~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI---TKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999996443322 356788888877777766666789875
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-12 Score=115.88 Aligned_cols=344 Identities=12% Similarity=0.098 Sum_probs=213.3
Q ss_pred cccCchhHH-HHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcch
Q 012627 26 CKYDNQVLT-LFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQA 104 (459)
Q Consensus 26 ~~~s~~~~~-~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 104 (459)
-|++..|+. -+.-...-.+....++...+.|..+.|++++++.+...+...+.-+.++.+.+-+..++-|++.+. ..+
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-eva 113 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVA 113 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHH
Confidence 345555553 566677777888999999999999999999999999999999999999999999999999999885 677
Q ss_pred hhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCChhhHHhcCC
Q 012627 105 VPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGK 184 (459)
Q Consensus 105 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~~~~~~ 184 (459)
-.+++-...|+++-.++.+...++.-+|..++.++|.........+.+..+.+......+.++..+++|..++...-+++
T Consensus 114 y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~ 193 (412)
T PF01770_consen 114 YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRK 193 (412)
T ss_pred HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceecc
Confidence 78899999999999999999999999999999999877776666678888888777767777777888876654433332
Q ss_pred HHHHHH----HHHHHcCCCcch--HHHHH---HHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHH
Q 012627 185 LDEARK----VLEKVRGTANVD--AEFSD---LIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILF 255 (459)
Q Consensus 185 ~~~~~~----~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (459)
.++..+ ..++.+..++.+ .+... ........+.....+++..+++. ...+. +.+.+...+++...+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~---ll~WS--lWWa~atcgy~qv~n 268 (412)
T PF01770_consen 194 PPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPR---LLLWS--LWWAFATCGYYQVIN 268 (412)
T ss_pred CccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCch---HHHHH--HHHHHHHhHHHHHHH
Confidence 211111 000000000000 00000 00000001111222333333333 22222 355556666777777
Q ss_pred hHHHHHHHc---CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 012627 256 YAPVIFQSL---GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPK 332 (459)
Q Consensus 256 ~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (459)
|...+-++. +-+....|..-....+.+.++.+..|++-.++.+...+..+......+..++.... .
T Consensus 269 YvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~-----------t 337 (412)
T PF01770_consen 269 YVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSF-----------T 337 (412)
T ss_pred HHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHH-----------h
Confidence 777666665 33334557777777888888888888885555443333322222221111111111 1
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHH
Q 012627 333 GIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTAL 387 (459)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~ 387 (459)
.+.|...+..+++...+....+....-+ +.....+.-+...|++.....+...+
T Consensus 338 ~~Iwv~Y~~yIif~~~y~fliTiA~~qI-A~~l~~e~yaLVFGiNtf~Al~LQti 391 (412)
T PF01770_consen 338 GNIWVCYAGYIIFRSLYMFLITIASFQI-AKNLSEERYALVFGINTFVALVLQTI 391 (412)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccccceeeeeeeHHHHHHHHHHh
Confidence 3456666666666666665443332333 33444555678888776666554444
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.8e-13 Score=127.72 Aligned_cols=149 Identities=14% Similarity=0.225 Sum_probs=124.9
Q ss_pred cCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhh----hHHHHHHHHHHhhhhhhhhcc
Q 012627 28 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV----HISMLLLGRIFLGMGIGFGNQ 103 (459)
Q Consensus 28 ~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~ 103 (459)
.+..+.+...++..++..++.++.|+++||+|||+++..+.++.+++..+..... +++.+++.+++.|++.+...+
T Consensus 248 ~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~ 327 (418)
T TIGR00889 248 FVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNI 327 (418)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4457779999999999999999999999999999999999999998877666632 346778899999999998889
Q ss_pred hhhHHHHhcCCCccchhHHHHHH-HHHHHHHHHHHHHHhccccccC----chhhHHHHhhHHHHHHHHHH-hcccCCCh
Q 012627 104 AVPLYLSEMAPAKIRGAVNQLFQ-LTTCLGILVANLINYGTEKIHP----WGWRLSLGLATVPATLMFVG-GLFLPETP 176 (459)
Q Consensus 104 ~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~lg~~~~~~~~~~~~----~gwr~~f~~~~~~~~~~~~~-~~~l~e~p 176 (459)
....++.|++|+++|++++++.+ ...++|.++||++++....... +||+..|.+.++..++..++ .+++||+.
T Consensus 328 ~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 328 SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999997 6789999999999765554322 57999999988887777555 45577763
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.2e-13 Score=118.50 Aligned_cols=185 Identities=14% Similarity=0.121 Sum_probs=144.2
Q ss_pred HhHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHH
Q 012627 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 320 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
+.+......-..+..-.|.+.++.++|..+.|.+.+...+..-++.++.|.++||.+.|+.+..+.+++++..+++++..
T Consensus 36 iGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~ 115 (448)
T COG2271 36 IGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSP 115 (448)
T ss_pred HHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhh
Confidence 45555555556677778999999999999999999999999999999999999999999999999999999888888753
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHH--HHHHhh
Q 012627 321 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAF--LAALCH 398 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~ 398 (459)
+.++..++..+-+...+.+++|..-.+ +.-+|+++||+..++-+...++|+++.+++. +.+.++
T Consensus 116 -------------s~~~~~~l~~lng~fQg~Gwpp~~~~i-~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~ 181 (448)
T COG2271 116 -------------SLFLFAVLWVLNGWFQGMGWPPCARTI-THWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH 181 (448)
T ss_pred -------------HHHHHHHHHHHHHHHhcCCCcHHHHHH-HHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc
Confidence 345566677778888888888875555 6999999999999999999999999999999 888877
Q ss_pred hhHHHHHHHHH-HHHHHHHHHHHhcCCCCCC-CHHHHHHHhcc
Q 012627 399 LKFGIFLVFGG-LVVIMSAFIYFFLPETKQV-PIEEIYLLFEN 439 (459)
Q Consensus 399 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 439 (459)
.++...+++.+ +++++++++++..+++.+. -++..|+..++
T Consensus 182 ~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d 224 (448)
T COG2271 182 GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGD 224 (448)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcC
Confidence 77766555544 4445555555555554322 23444444333
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-13 Score=128.16 Aligned_cols=148 Identities=12% Similarity=0.131 Sum_probs=124.4
Q ss_pred ccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcchhh
Q 012627 27 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 106 (459)
Q Consensus 27 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 106 (459)
+.+..+.|++.++..++..++.+++|++.||+|||+.+..+.++.+++.++.++++|.+.+++.+++.|++.+...+...
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHhcCCCccchhHHHH-HHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hcccCCCh
Q 012627 107 LYLSEMAPAKIRGAVNQL-FQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETP 176 (459)
Q Consensus 107 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p 176 (459)
.++.|.+|++.|+...+. ++....+|.++++.+.+. ..+..|||..|.+.++..++..++ .+.+++.|
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~--l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGN--LYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHH--HHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999887665 677788999999999544 344568999999988877766544 34455443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.5e-13 Score=126.65 Aligned_cols=375 Identities=14% Similarity=0.154 Sum_probs=205.7
Q ss_pred cccccCchhHHHHHHHhHHHHHHHHHHhhhhhccc---c--cchhhhHHHHHHHHHHHHHHhh----hhHHHHHHHHHHh
Q 012627 24 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR---G--RRASIMVGSVSFFIGAILNACA----VHISMLLLGRIFL 94 (459)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~---G--rr~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~ 94 (459)
+++|+++.+...+.++..+...+ -++.|.++|.+ | ||+-++++.++..++.+..+.. .+.....++-++.
T Consensus 18 ~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la 96 (433)
T PF03092_consen 18 DDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLA 96 (433)
T ss_pred HHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHH
Confidence 34455566668888888877766 66789999976 3 5555666777776656555543 3566677777888
Q ss_pred hhhhhhhcchhhHHHHhcCC--CccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcc-
Q 012627 95 GMGIGFGNQAVPLYLSEMAP--AKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF- 171 (459)
Q Consensus 95 G~~~g~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~- 171 (459)
.+|.......+-+++.|... +++||...+.......+|.+++..+++. ..+..++|..|.+.+....+..+..++
T Consensus 97 ~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~--l~~~~~~~~~f~i~~~~~~l~~~~~~~~ 174 (433)
T PF03092_consen 97 SFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGP--LLDSFGPQGVFLISAALPLLMLIVALFL 174 (433)
T ss_pred HHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhh--hhhcCCCeEEehHHHHHHHHHHHHHHHh
Confidence 99999999999999999983 4447888888888999999999988544 344557888998888777766555444
Q ss_pred cCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHH-HHHHHhHHHhhcch
Q 012627 172 LPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVI-GALGIPAFQQLTGM 250 (459)
Q Consensus 172 l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 250 (459)
.+|.++. .+.+..... ++ +.... ....++.....++.++.+..+.... ..+ +........
T Consensus 175 ~~e~~~~--~~~~~~~~~---------~~---~~~~~---~~~~~~~~~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~- 235 (433)
T PF03092_consen 175 LEERKVR--PADEVFSFG---------KE---EVPCL---FGSFREQLSELWRALQQRAIWQPILFFIF-FFNLPPSIS- 235 (433)
T ss_pred hhhcccc--ccchhhccc---------cc---ccchh---hHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHhccCCC-
Confidence 4442110 000000000 00 00000 0001111122333333332222222 111 111111100
Q ss_pred hH-HHHhHHHHHHHcC---CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcC
Q 012627 251 NS-ILFYAPVIFQSLG---FGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGE 326 (459)
Q Consensus 251 ~~-~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (459)
.+ ..++.. +..+ +++...+....+..++.++|..+..+...+..-|+++....++..+..+.-.... ..++.
T Consensus 236 ~a~~fy~~~---~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv-~~~n~ 311 (433)
T PF03092_consen 236 SASSFYFQT---DALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLV-TRWNL 311 (433)
T ss_pred CccEEEEEe---ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEE-EEEee
Confidence 11 111111 1233 6666667777666777777777666665555555554433332222211111000 00000
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh------
Q 012627 327 GKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK------ 400 (459)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------ 400 (459)
.-..++. +..+.-..+........+-|... ..+|++|+..-|+..++..++.+++..++..+...+.+..+
T Consensus 312 ~~Gi~d~--~f~lgd~~l~~~~~~i~~mP~lv-l~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f 388 (433)
T PF03092_consen 312 DLGIPDQ--WFALGDTILEEVIGMIAFMPSLV-LAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDF 388 (433)
T ss_pred eeCcCCe--EEEEEhHHHHHHHHHHHHHHHHH-HHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 0001111 22222223333333344445433 34799999999999999999999999999998888876554
Q ss_pred --HHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 012627 401 --FGIFLVFGGLVVIMSAFIYFFLPETKQ 427 (459)
Q Consensus 401 --~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (459)
.....++..++.++.+.+..++|+.++
T Consensus 389 ~~l~~lili~~~~~ll~l~ll~lLp~~~~ 417 (433)
T PF03092_consen 389 SNLWLLILICSVIQLLPLPLLFLLPPQKR 417 (433)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence 223334444444555555556666443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.7e-13 Score=123.44 Aligned_cols=147 Identities=16% Similarity=0.148 Sum_probs=121.1
Q ss_pred ccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcch
Q 012627 25 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQA 104 (459)
Q Consensus 25 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 104 (459)
.+|.+..+.+++.+...++..++.+++|+++||+|||+.+..+.+...+........++.+.+++.|++.+++.+...+.
T Consensus 246 ~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~ 325 (393)
T PRK15011 246 ELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGI 325 (393)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777898888888888889999999999999999888777666666555556778888889999999888887777
Q ss_pred hhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCC
Q 012627 105 VPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPE 174 (459)
Q Consensus 105 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e 174 (459)
...+..|.+|+ +|+++.++.+...++|..+++.+++.. .+..||+..|++.+++.++.++..+++||
T Consensus 326 ~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 326 GMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIV--AEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 78888999985 599999999999999999999996544 34468999999988888887777777765
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.9e-12 Score=110.59 Aligned_cols=236 Identities=11% Similarity=0.129 Sum_probs=150.9
Q ss_pred cccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcc
Q 012627 24 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQ 103 (459)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 103 (459)
+.+|.++.+++.+....+....+..++.|.++||+|||+.-+..+++++++++. -..++++.++++|++.|++.+....
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTSLLfS 140 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATSLLFS 140 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999999964 4668999999999999999999999
Q ss_pred hhhHHH-HhcC----CCccchhHHHHHH-HHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhc-ccCCCh
Q 012627 104 AVPLYL-SEMA----PAKIRGAVNQLFQ-LTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGL-FLPETP 176 (459)
Q Consensus 104 ~~~~~i-~~~~----~~~~r~~~~~~~~-~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~-~l~e~p 176 (459)
+-.++. .|.- |++..+..++... ...++-.+++.+++-........|-..+|....+..++..++.. .-+|.+
T Consensus 141 ~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENy 220 (354)
T PF05631_consen 141 AFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENY 220 (354)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccC
Confidence 888864 4442 3333333333333 22333344444444333333333457888888777777655543 345543
Q ss_pred hhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHh
Q 012627 177 NSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFY 256 (459)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (459)
... .+..+ ..+..++.++.++++++ ...... ....+-...+.....|
T Consensus 221 g~~---~~~~~--------------------------~~~~~~~a~~~i~~d~r---il~LG~-~qslFE~smy~FVflW 267 (354)
T PF05631_consen 221 GDT---SSSSS--------------------------LSGSFREAWRAILSDPR---ILLLGL-IQSLFEGSMYLFVFLW 267 (354)
T ss_pred CCc---ccccc--------------------------hHHHHHHHHHHHHcCch---hHHHHH-HHHHHHHHHHHheeee
Confidence 200 00000 00011112333443332 222222 4455555555555667
Q ss_pred HHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 012627 257 APVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDK 295 (459)
Q Consensus 257 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 295 (459)
.|.+-.+ -.....|+++..+.+..++|+.+..++..+
T Consensus 268 tPaL~~~--~~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 268 TPALDPD--DEELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred eceecCC--CCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8876511 122357899999999999999888765544
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.6e-13 Score=125.11 Aligned_cols=170 Identities=18% Similarity=0.178 Sum_probs=121.7
Q ss_pred HHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHH
Q 012627 243 AFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLAL 322 (459)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (459)
.+.............|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+..+..++.++.....
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-- 103 (398)
T TIGR00895 26 MLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALAT-- 103 (398)
T ss_pred HHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcc--
Confidence 333333445566678888888999999999999999999999999999999999999988877766665555444321
Q ss_pred HhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 012627 323 EFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFG 402 (459)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (459)
..+..++...+.+.+.+... +....+..|.+|++.|+++.++......++..+++.+.+.+.+..++.
T Consensus 104 -----------~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~ 171 (398)
T TIGR00895 104 -----------NVTQLLILRFLAGLGLGGLM-PNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWR 171 (398)
T ss_pred -----------chHHHHHHHHHHhcccccch-hhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccce
Confidence 12333344444444444333 344566789999999999999999999999999999999988877766
Q ss_pred HHHHHH-HHHHHHHHHHHHhcCCCC
Q 012627 403 IFLVFG-GLVVIMSAFIYFFLPETK 426 (459)
Q Consensus 403 ~~~~~~-~~~~~~~~~~~~~~~~~~ 426 (459)
..+.+. .+..+...+.....+++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 172 SLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred eehhhhhhHHHHHHHHHHHhCCCCC
Confidence 555444 344444455555666653
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-12 Score=120.40 Aligned_cols=145 Identities=24% Similarity=0.332 Sum_probs=131.4
Q ss_pred cccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccch-hhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcch
Q 012627 26 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRA-SIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQA 104 (459)
Q Consensus 26 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 104 (459)
+|.++.+.++..+...++..++.+++|++.||+|||+ .+..+..+..++.++....++.+.+.+..++.|++.+...+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 285 (352)
T cd06174 206 LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPA 285 (352)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchh
Confidence 3667888899999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred hhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhccc
Q 012627 105 VPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL 172 (459)
Q Consensus 105 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l 172 (459)
...++.|..|+++|++.+++.....++|..+++.+.+.. .+..+|+..+++.+++.++..+..+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l--~~~~~~~~~~~~~~~~~~i~~i~~~~~ 351 (352)
T cd06174 286 LLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLL--LDTGGYGGVFLILAALALLAALLLLLL 351 (352)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcccCcchHHHHHHHHHHHHHHHheec
Confidence 999999999999999999999999999999999995444 345689999999999988876665443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.42 E-value=3e-12 Score=120.50 Aligned_cols=162 Identities=17% Similarity=0.191 Sum_probs=119.9
Q ss_pred hHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 012627 251 NSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPL 330 (459)
Q Consensus 251 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (459)
.......|.+.+++|.+..+.++......++..++.++.|++.||+|||+.+..+..+..++..+.....
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~---------- 80 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG---------- 80 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc----------
Confidence 4455667777788999999999999999999999999999999999999998887776666666554431
Q ss_pred CchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 012627 331 PKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGL 410 (459)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (459)
..+...+...+.+.+.+... +....+..|.+|+++|+++.++......++..+++.+.+.+.+..++...+...++
T Consensus 81 ---~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 156 (399)
T TIGR00893 81 ---AYVSLYILRVLLGAAEAPFF-PGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGV 156 (399)
T ss_pred ---CHHHHHHHHHHHHHHHHhhh-hHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 12344445555555554443 44456678999999999999999999999999999999998887777665555444
Q ss_pred HHHH-HHHHHHhcCCCC
Q 012627 411 VVIM-SAFIYFFLPETK 426 (459)
Q Consensus 411 ~~~~-~~~~~~~~~~~~ 426 (459)
..+. .++.....++++
T Consensus 157 ~~~~~~~~~~~~~~~~~ 173 (399)
T TIGR00893 157 LGIIWGVLWLKFIPDPP 173 (399)
T ss_pred HHHHHHHHhhheecCCC
Confidence 4333 333344445443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.2e-12 Score=118.81 Aligned_cols=172 Identities=12% Similarity=0.116 Sum_probs=124.3
Q ss_pred HhHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHH
Q 012627 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 320 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
+..+.............|.+.+++|.+..+.++......++..++.++.|++.||+|||+.+..+..+..++.++.....
T Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~ 98 (405)
T TIGR00891 19 LGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAP 98 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555555666667777888788999999999999999999999999999999999999988877666666655544321
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012627 321 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 400 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (459)
..+..+....+.+.+.+... +....+..|.+|+++|+++.++.+....+|..+++.+.+.+.+..+
T Consensus 99 -------------~~~~l~~~~~l~G~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 164 (405)
T TIGR00891 99 -------------GYITMFIARLVIGIGMGGEY-GSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG 164 (405)
T ss_pred -------------cHHHHHHHHHHHHhhhhhhh-HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 12333444445555544444 3335556799999999999999999999999999999988877655
Q ss_pred --HHHHHHHHHHHHHHHHHHHHhcCCCC
Q 012627 401 --FGIFLVFGGLVVIMSAFIYFFLPETK 426 (459)
Q Consensus 401 --~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (459)
+...+...++..+..++.....||++
T Consensus 165 ~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 192 (405)
T TIGR00891 165 DGWRALFFISILPIIFALWLRKNIPEAE 192 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 66555555555555555455556543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-12 Score=121.57 Aligned_cols=170 Identities=13% Similarity=0.109 Sum_probs=122.9
Q ss_pred hHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHH
Q 012627 242 PAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLA 321 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 321 (459)
..+...........+.|.+.+++|++..+.++......++..++.++.|++.||+|||+.+..+..+..++.++.....
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~- 109 (434)
T PRK11663 31 GYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSS- 109 (434)
T ss_pred HHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHh-
Confidence 3344444444566778999899999999999999999999999999999999999999988877777666665554431
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 012627 322 LEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKF 401 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (459)
..+...+...+.+.+.+..+. ....+..|.+|+++|++++++.+....++..+++.+.+.+.+..++
T Consensus 110 ------------~~~~l~~~~~l~g~~~g~~~~-~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw 176 (434)
T PRK11663 110 ------------SLWAFALLWVLNAFFQGWGWP-VCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGW 176 (434)
T ss_pred ------------HHHHHHHHHHHHHHHHHccch-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 123333333344444444443 3345667999999999999999999999999999999999888887
Q ss_pred HHHHHHHHHH-HHHHHHHHHhcCCC
Q 012627 402 GIFLVFGGLV-VIMSAFIYFFLPET 425 (459)
Q Consensus 402 ~~~~~~~~~~-~~~~~~~~~~~~~~ 425 (459)
...+...++. .+.+++..+.++|+
T Consensus 177 ~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 177 RYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 7666554443 33334444455553
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-11 Score=116.41 Aligned_cols=172 Identities=13% Similarity=0.049 Sum_probs=121.4
Q ss_pred HhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHh
Q 012627 245 QQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEF 324 (459)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (459)
....+........|.+.++.+.++.+.++......++..++.++.|+++||++||+.+..+..+..++..........
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~-- 105 (417)
T PRK10489 28 ISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL-- 105 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc--
Confidence 334445566677888888888888899999999999999999999999999999999988776666655544332110
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 012627 325 GEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIF 404 (459)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (459)
.....+...+...+.+.+.+....+. .....|.+|+++|+++.++.+....++..+++.+.+.+.+..++...
T Consensus 106 ------~~~~~~~l~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~ 178 (417)
T PRK10489 106 ------PEPSLLAIYLLGLWDGFFGSLGVTAL-LAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWN 178 (417)
T ss_pred ------CCCcHHHHHHHHHHHHHHHHHHHHHH-hhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHH
Confidence 01112333333333444433333333 44557899999999999999999999999999999999887776666
Q ss_pred HHHHHHHHHHHHHHHHhcCCC
Q 012627 405 LVFGGLVVIMSAFIYFFLPET 425 (459)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~ 425 (459)
+.+.++..+.+.+..+.+++.
T Consensus 179 ~~~~~~~~~~~~~~~~~l~~~ 199 (417)
T PRK10489 179 YGLAAAGTFITLLPLLRLPAL 199 (417)
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 666666555555555666654
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-11 Score=116.19 Aligned_cols=173 Identities=16% Similarity=0.095 Sum_probs=125.2
Q ss_pred HhHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHH
Q 012627 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 320 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
+.++..........+..|.+.+++|++..+.++..+...++..++.++.|++.||+|||+.+..+..+..++..+..+..
T Consensus 15 ~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T TIGR02332 15 ILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFAT 94 (412)
T ss_pred HHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555566666677777877788999999999999999999999999999999999999988777776666666655431
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHh---
Q 012627 321 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALC--- 397 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--- 397 (459)
+.+.+.+.-.+.+.+.+... +....+..|.+|+++|+++.++.+....+|..+++.+.+.+.+
T Consensus 95 -------------~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 160 (412)
T TIGR02332 95 -------------GPESLYLLRILVGIAEAGFL-PGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDG 160 (412)
T ss_pred -------------CHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 12333444445555544333 4445566899999999999999999999999999999988764
Q ss_pred ---hhhHHHHHHHHHHH-HHHHHHHHHhcCCCCC
Q 012627 398 ---HLKFGIFLVFGGLV-VIMSAFIYFFLPETKQ 427 (459)
Q Consensus 398 ---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 427 (459)
..+|...+...++. .+...+.++++||+++
T Consensus 161 ~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 161 LMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 24666655554433 3444555566676653
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.4e-12 Score=120.28 Aligned_cols=141 Identities=16% Similarity=0.088 Sum_probs=120.6
Q ss_pred HHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcchhhHHHHhc
Q 012627 33 LTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEM 112 (459)
Q Consensus 33 ~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 112 (459)
.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~ 330 (399)
T PRK05122 251 AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKR 330 (399)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 46677888889999999999999999999999999999898888888888888889999999999998888888888999
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCC
Q 012627 113 APAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPET 175 (459)
Q Consensus 113 ~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~ 175 (459)
+|+++|+++.++++....+|..+++.+.+. ..+..||++.|++.++..++..+..+++++.
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~--l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 331 VPPQNRGAALGAYSVFLDLSLGITGPLAGL--VASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999998888433 3344579999999888888776665555443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-11 Score=116.09 Aligned_cols=170 Identities=11% Similarity=0.070 Sum_probs=116.9
Q ss_pred HhHHHhhcchhHHHHhHHHHHH-HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHH
Q 012627 241 IPAFQQLTGMNSILFYAPVIFQ-SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAIT 319 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 319 (459)
+..++...+.+....++|.+++ ++|++..+.++..+...+..++++++.|+++||+|||+.+..+.....++.+.+.+.
T Consensus 14 ~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~ 93 (395)
T PRK10054 14 ASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV 93 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH
Confidence 3455556666667777887775 589999999999999999999999999999999999998877776665555544432
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 012627 320 LALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL 399 (459)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 399 (459)
. ..+..+....+.+.+.+ ...+....+..|..|++.|+++.|+.+...+++..++|.+.+.+.+ .
T Consensus 94 ~-------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~ 158 (395)
T PRK10054 94 N-------------NVTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-Q 158 (395)
T ss_pred h-------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 1 12222323333333333 2234445566799999999999999999999999999999998775 4
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHhcCCC
Q 012627 400 KFGIFLVFGGLVVIMSA-FIYFFLPET 425 (459)
Q Consensus 400 ~~~~~~~~~~~~~~~~~-~~~~~~~~~ 425 (459)
++...+...+++.+++. +..+..++.
T Consensus 159 g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 159 SINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 55544444444444443 333445544
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.2e-12 Score=117.54 Aligned_cols=148 Identities=16% Similarity=0.173 Sum_probs=122.1
Q ss_pred cccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcc
Q 012627 24 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQ 103 (459)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 103 (459)
+++|.++.+.+++.+.......++.++.|++.||+|||+++.++.++..+......+.++.+.+.+.+++.|++.+...+
T Consensus 228 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 307 (375)
T TIGR00899 228 HELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAG 307 (375)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777889888888777888899999999999999999888877776666666778888888999999999998888
Q ss_pred hhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCC
Q 012627 104 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPE 174 (459)
Q Consensus 104 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e 174 (459)
....++.|..|+ ++++++++......+|..++|.+++.. .+..||+..|++.++..++..+...+++|
T Consensus 308 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 308 IGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGIL--AERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHH--HHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 888899999876 467999999999999999999995443 34457999999999888877766665554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.6e-12 Score=119.13 Aligned_cols=140 Identities=11% Similarity=0.008 Sum_probs=118.5
Q ss_pred ccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhH--HHHHHHHHHhhhhhhhhc
Q 012627 25 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHI--SMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 25 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~ 102 (459)
+++.++.+.+++.+...++..++.++.|++.||+|||+.+..+.++.+++.++..+.++. ..+.+..++.|++.+...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 313 (377)
T TIGR00890 234 SLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTI 313 (377)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccch
Confidence 356677788999999999999999999999999999999999999999888887776643 345567788898888888
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHH
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMF 166 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~ 166 (459)
+....++.|.+|+++|+++.++......+|..++|.+.+.. .+..||++.|.+.++..++..
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l--~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 314 SLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHA--LTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred hccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH--HhhhchhhHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999995443 445689999998887766543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.1e-12 Score=117.71 Aligned_cols=166 Identities=13% Similarity=0.160 Sum_probs=117.9
Q ss_pred hhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhc
Q 012627 246 QLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFG 325 (459)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (459)
............|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.++.....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----- 81 (379)
T TIGR00881 7 YYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST----- 81 (379)
T ss_pred HHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh-----
Confidence 334445566677888788999999999999999999999999999999999999998888777777666655432
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHH-HHHHHHhhhhHHHH
Q 012627 326 EGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQ-AFLAALCHLKFGIF 404 (459)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 404 (459)
..+..++...+.+.+.+... +....+..|.+|+++|+++.++.+....++..+++. +.+.+.+..++...
T Consensus 82 --------~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 152 (379)
T TIGR00881 82 --------SLWVMAALWALNGIFQGMGW-PPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWV 152 (379)
T ss_pred --------hHHHHHHHHHHHHhhccccC-CchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhH
Confidence 12334444444455444333 444666789999999999999999999999999995 44555555555554
Q ss_pred HHHHH-HHHHHHHHHHHhcCCC
Q 012627 405 LVFGG-LVVIMSAFIYFFLPET 425 (459)
Q Consensus 405 ~~~~~-~~~~~~~~~~~~~~~~ 425 (459)
+...+ +..+.+++.....+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 153 FIVPGIIAIIVSLICFLLLRDS 174 (379)
T ss_pred HHHHHHHHHHHHHHHheeeCCC
Confidence 44433 3444444444555554
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.1e-11 Score=113.06 Aligned_cols=167 Identities=14% Similarity=0.106 Sum_probs=118.8
Q ss_pred hHHHhhcchhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh-CCcceeehhhHHHHHHHHHHHHH
Q 012627 242 PAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKF-GRRAFFLEAGTEMIIYMVIVAIT 319 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~ 319 (459)
..+.....++.+..++|.++++ +|+++.+++...........++.+++|+++||+ |||+.+..+..+..++.+++...
T Consensus 17 ~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~ 96 (493)
T PRK15462 17 LQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS 96 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555677788899999865 899999999999999999999999999999999 99998888877777666544321
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcc--cccccchHHHHHHHHHHHHHHHHHHHHHh
Q 012627 320 LALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLE--MRSAGQSVVVCNNLLFTALIAQAFLAALC 397 (459)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 397 (459)
. ...............+.+... +....+..|.+|++ .|.++.++.+...++|+.++|.+.+++.+
T Consensus 97 ~------------~~~~~~~l~l~li~iG~G~~~-~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~ 163 (493)
T PRK15462 97 E------------IHPSFLYLSLAIIVCGYGLFK-SNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE 163 (493)
T ss_pred h------------cchhHHHHHHHHHHHhccccc-ccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 001111222222223333222 33345668999875 68999999999999999999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh
Q 012627 398 HLKFGIFLVFGGLVVIMSAFIYFF 421 (459)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~ 421 (459)
..++...+..+++..+++++.+..
T Consensus 164 ~~Gw~~~F~iaaigm~l~li~~~~ 187 (493)
T PRK15462 164 EYSWAMGFGLAAVGMIAGLVIFLC 187 (493)
T ss_pred hhChHHHHHHHHHHHHHHHHHHHH
Confidence 888776666555555555554443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-11 Score=113.80 Aligned_cols=171 Identities=12% Similarity=0.067 Sum_probs=122.5
Q ss_pred HHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHH
Q 012627 243 AFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLAL 322 (459)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (459)
.+....+........|.+..+.+.++.+.++......++..++.++.|+++||+|||+.+..+..+..++..+.......
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 87 (365)
T TIGR00900 8 QLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL 87 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33344445556667788888889999999999999999999999999999999999998887776665555554443210
Q ss_pred HhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 012627 323 EFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFG 402 (459)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (459)
+....+...+...+.+.+.+... +....+..|.+|+++|+++.++.+....++..+++.+.+.+.+..++.
T Consensus 88 --------~~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~ 158 (365)
T TIGR00900 88 --------GGLNIWQVYVLAGILAIAQAFFT-PAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIK 158 (365)
T ss_pred --------CCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 00123444444445555544333 444566689999999999999999999999999999999998888877
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 012627 403 IFLVFGGLVVIMSAFIYFFL 422 (459)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~ 422 (459)
..+...++..+++.+.....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 159 WAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 66655555444444443333
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-11 Score=116.00 Aligned_cols=148 Identities=12% Similarity=0.069 Sum_probs=122.2
Q ss_pred cccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcchh
Q 012627 26 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 105 (459)
Q Consensus 26 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 105 (459)
.|.+..+.+++.+...++..++.++.|++.||+|||+.+..+.+...++.++..+.++.+.+.+.-++.|++.+...+..
T Consensus 250 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 329 (406)
T PRK11551 250 QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVL 329 (406)
T ss_pred CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHH
Confidence 46777888999999999999999999999999999999988877777777777777888888888889999888888889
Q ss_pred hHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCC
Q 012627 106 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPE 174 (459)
Q Consensus 106 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e 174 (459)
.+++.|.+|+++|+++.++.+....+|..+||.+++..... ..+|...++......++..++.+++.+
T Consensus 330 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK11551 330 YALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLAL-GRSTVGVIGASIPVILVAALAALLLVS 397 (406)
T ss_pred HHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhcc-CCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999996554432 235677777766666665555444433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-11 Score=114.43 Aligned_cols=168 Identities=18% Similarity=0.164 Sum_probs=119.2
Q ss_pred hhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhc
Q 012627 246 QLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFG 325 (459)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (459)
............|.+.+++|.++.+.++......++..++.++.|++.||+|||+.+..+..+..++.+......
T Consensus 17 ~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~----- 91 (385)
T TIGR00710 17 GPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN----- 91 (385)
T ss_pred HHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc-----
Confidence 333444455567888888999999999999999999999999999999999999988877766666655544321
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 012627 326 EGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFL 405 (459)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (459)
..+...+...+.+.+.+... +....+..|.+|+++|+++.++.+....++..+++.+.+.+.+..++...+
T Consensus 92 --------~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~ 162 (385)
T TIGR00710 92 --------NIETLLVLRFVQAFGASAGS-VISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIF 162 (385)
T ss_pred --------cHHHHHHHHHHHHcchhHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 12333334444444444333 333556679999999999999999999999999999999988877766554
Q ss_pred HHHH-HHHHHHHHHHHhcCCCCC
Q 012627 406 VFGG-LVVIMSAFIYFFLPETKQ 427 (459)
Q Consensus 406 ~~~~-~~~~~~~~~~~~~~~~~~ 427 (459)
...+ +..+......+..||+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 163 AFLSLAGILLSALIFFILPETLP 185 (385)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCC
Confidence 4433 333444444445565443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-11 Score=115.73 Aligned_cols=136 Identities=13% Similarity=0.084 Sum_probs=118.3
Q ss_pred HHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcchhhHHHHhc
Q 012627 33 LTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEM 112 (459)
Q Consensus 33 ~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 112 (459)
.++..+.+.++..+++++.|++.||+|||+.+..+..+.+++.++..+.++.+.+.+.+++.|++.+...+...+.+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45667778888899999999999999999999999999999988888888888889999999999998888888899999
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhc
Q 012627 113 APAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGL 170 (459)
Q Consensus 113 ~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~ 170 (459)
+|+++|+++.++.+....+|..++|.+.+.. .+..||+..|.+.++..++..+..+
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l--~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGML--ATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999985443 4445899999999888777655543
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.3e-11 Score=112.34 Aligned_cols=160 Identities=14% Similarity=0.025 Sum_probs=115.0
Q ss_pred HHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 012627 252 SILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLP 331 (459)
Q Consensus 252 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (459)
......|.+.+++|.++.+.++......++..++.+..|++.||+|||+.+..+..+..++.+......
T Consensus 27 ~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----------- 95 (390)
T PRK03545 27 VPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAW----------- 95 (390)
T ss_pred HHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence 344457888888999999999999999999999999999999999999998888777666665554431
Q ss_pred chhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 012627 332 KGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLV 411 (459)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (459)
..+..++...+.+.+.+. ..+....+..|.+|+++|+++.|+......++..+++.+.+.+.+..++...+...+++
T Consensus 96 --~~~~l~~~r~~~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~ 172 (390)
T PRK03545 96 --NFTVLLISRIGIAFAHAI-FWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGG 172 (390)
T ss_pred --cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHH
Confidence 123333333344444332 22333455679999999999999999999999999999999988887877655554443
Q ss_pred HH-HHHHHHHhcCCC
Q 012627 412 VI-MSAFIYFFLPET 425 (459)
Q Consensus 412 ~~-~~~~~~~~~~~~ 425 (459)
.+ .........|+.
T Consensus 173 ~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 173 ALITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHHhCCCC
Confidence 33 333334445543
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-11 Score=114.60 Aligned_cols=169 Identities=9% Similarity=0.081 Sum_probs=123.4
Q ss_pred HhHHHhhcchhHHHHhHHHHHHH---cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH-hCCcceeehhhHHHHHHHHHH
Q 012627 241 IPAFQQLTGMNSILFYAPVIFQS---LGFGSGAALYSSVITGIALCIAALISMAFVDK-FGRRAFFLEAGTEMIIYMVIV 316 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~ 316 (459)
...+....+++....++|.|+++ +|++..+++.......+...++.+++|+++|| +|||+.+..+..+..++.+++
T Consensus 17 ~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~ 96 (475)
T TIGR00924 17 FVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFML 96 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 44555566778888889999865 79999999999999999999999999999999 899999988888777776655
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCccc---ccccchHHHHHHHHHHHHHHHHHH
Q 012627 317 AITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEM---RSAGQSVVVCNNLLFTALIAQAFL 393 (459)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~g~~~~~~~~~~~~~~~~~~ 393 (459)
.... ..+...+...+.+.+.+.. .+....+.+|.+|++. |+++.++.+...++|..+++.+.+
T Consensus 97 ~~~~-------------~~~~~~~~~~l~g~g~g~~-~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g 162 (475)
T TIGR00924 97 AMSI-------------YPDLIFYGLGTIAVGSGLF-KANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAG 162 (475)
T ss_pred Hhcc-------------cHhHHHHHHHHHHhccccc-cCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHH
Confidence 5421 1122223333344443333 3344555678887653 888999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 012627 394 AALCHLKFGIFLVFGGLVVIMSAFIYFFLP 423 (459)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (459)
.+.++.++...+...+++.+.+.+.+...+
T Consensus 163 ~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~ 192 (475)
T TIGR00924 163 VIAENYGYHVGFNLAAVGMVIGLLTFFAGR 192 (475)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHcc
Confidence 999887777666665555555555544444
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-11 Score=117.85 Aligned_cols=140 Identities=11% Similarity=0.101 Sum_probs=114.3
Q ss_pred cccCchhHHHHHHHhHHHHHHHHHHhhhhhccc--ccchhhh--HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhh
Q 012627 26 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR--GRRASIM--VGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFG 101 (459)
Q Consensus 26 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~--Grr~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 101 (459)
.|.+..+.+++.++..++..++.++.|+++||. ++|+... .+.++.+++.+++...++++.+++.+++.|++.+..
T Consensus 271 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~ 350 (455)
T TIGR00892 271 KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSV 350 (455)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchH
Confidence 477888889999999999999999999999984 3443333 344444555566677889999999999999999999
Q ss_pred cchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCc-hhhHHHHhhHHHHHHHHH
Q 012627 102 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPW-GWRLSLGLATVPATLMFV 167 (459)
Q Consensus 102 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~-gwr~~f~~~~~~~~~~~~ 167 (459)
.+...+++.|.+|++++++.+++++...++|.++||.+++ ...+.. +|++.|++.++..++..+
T Consensus 351 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G--~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 351 GALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAG--RLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHcccccee--eeehhcCCcchHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999999999944 333333 599999998887665544
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-11 Score=115.82 Aligned_cols=137 Identities=16% Similarity=0.056 Sum_probs=119.2
Q ss_pred HHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcchhhHHHHhc
Q 012627 33 LTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEM 112 (459)
Q Consensus 33 ~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 112 (459)
.+.+.++..++..++.+.+|++.||+|||+.+..+..+..++.+...+.++.+.+.+.+++.|++.+...+....++.+.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 46677777888889999999999999999999999988888888888888889999999999999999999999999999
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcc
Q 012627 113 APAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF 171 (459)
Q Consensus 113 ~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~ 171 (459)
.|+++||+.+++......+|..+||.+++.. .+..||++.|++.++..++..+..++
T Consensus 340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l--~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAI--SANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred CCcccceeeehHHHHHHHHHHHhhHHHHHHH--HhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999995444 44568999999999888877665443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.5e-11 Score=113.75 Aligned_cols=158 Identities=13% Similarity=0.094 Sum_probs=116.8
Q ss_pred HhHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHH
Q 012627 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 320 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
+..+.............|.+.+++|.++.+.++......++..++.++.|+++||+|||+.+..+.....++.++.....
T Consensus 25 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~ 104 (426)
T PRK12307 25 LGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLAS 104 (426)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444555566667777788999999999999999999999999999999999999999888877777776655432
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012627 321 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 400 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (459)
..+...+.-.+.+.+.+... +....+..|.+|++.|+++.++......+|..+++.+.+.+.+..+
T Consensus 105 -------------~~~~l~~~r~l~G~g~g~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~ 170 (426)
T PRK12307 105 -------------GVIMLTLSRFIVGMGMAGEY-ACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG 170 (426)
T ss_pred -------------HHHHHHHHHHHHHHHHhhHH-HHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC
Confidence 12334444444554444333 3335556799999999999999999889999999988888877777
Q ss_pred HHHHHHHHHHHH
Q 012627 401 FGIFLVFGGLVV 412 (459)
Q Consensus 401 ~~~~~~~~~~~~ 412 (459)
+...+.+..+..
T Consensus 171 w~~~f~i~~~~~ 182 (426)
T PRK12307 171 WRAAFFVGLLPV 182 (426)
T ss_pred HHHHHHHHHHHH
Confidence 776665544433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=8e-11 Score=110.35 Aligned_cols=160 Identities=17% Similarity=0.140 Sum_probs=117.1
Q ss_pred HHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 012627 252 SILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLP 331 (459)
Q Consensus 252 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (459)
......|.+.+++|+++.+.++......++..++.++.|++.||+|||+.+..+..+..++.++....
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------------ 105 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA------------ 105 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH------------
Confidence 34445677778899999999999999999999999999999999999999888888777766555432
Q ss_pred chhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 012627 332 KGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLV 411 (459)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (459)
...+..++.-.+.+.+.+... +....++.|.+|+++|+++.++......++..+++.+.+.+.+..++...+...+++
T Consensus 106 -~~~~~l~~~r~l~G~~~g~~~-~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l 183 (394)
T PRK10213 106 -NSFSLLLIGRACLGLALGGFW-AMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVM 183 (394)
T ss_pred -ChHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 112334444445555544433 444556679999999999999999999999999999999998887877665554443
Q ss_pred HHHHHH-HHHhcCCC
Q 012627 412 VIMSAF-IYFFLPET 425 (459)
Q Consensus 412 ~~~~~~-~~~~~~~~ 425 (459)
.+.+.+ .....|++
T Consensus 184 ~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 184 GVLCIFWIIKSLPSL 198 (394)
T ss_pred HHHHHHHHHHHCCCC
Confidence 333332 22334543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-11 Score=116.29 Aligned_cols=148 Identities=14% Similarity=0.023 Sum_probs=109.1
Q ss_pred cccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHH--HHhhhhHHHHHHHHHHhhhhhhhh
Q 012627 24 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAIL--NACAVHISMLLLGRIFLGMGIGFG 101 (459)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~r~l~G~~~g~~ 101 (459)
+.+|.|..+.++..+...++..++.+++|+++||+|||+.+.....+..++..+ ....++.+...+.+++.|++....
T Consensus 287 ~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 366 (467)
T PRK09556 287 QELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGP 366 (467)
T ss_pred HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhH
Confidence 346677788899999999999999999999999999999877655544443322 233456667778888888654443
Q ss_pred cchhhHHHHhcCCCccchhHHHHHHHHHHH-HHHHHHHHHhcccc----------ccCchhhHHHHhhHHHHHHHHHHhc
Q 012627 102 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCL-GILVANLINYGTEK----------IHPWGWRLSLGLATVPATLMFVGGL 170 (459)
Q Consensus 102 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~lg~~~~~~~~~----------~~~~gwr~~f~~~~~~~~~~~~~~~ 170 (459)
.........|.+|+++||.+.|+.+...++ |..++|.+.+...+ ....+|+..|++.++..++..+..+
T Consensus 367 ~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 367 QLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 333446677999999999999999988886 76888887444444 0135799999988777777655544
Q ss_pred c
Q 012627 171 F 171 (459)
Q Consensus 171 ~ 171 (459)
+
T Consensus 447 ~ 447 (467)
T PRK09556 447 I 447 (467)
T ss_pred H
Confidence 3
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-10 Score=104.09 Aligned_cols=169 Identities=18% Similarity=0.164 Sum_probs=138.0
Q ss_pred HhHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHH
Q 012627 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 320 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
+..|...+..+...-.+|.+.+++|.+..++|...+.+..+..++.++...+.||+.||+.+.....+..++.++..+..
T Consensus 20 ~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp 99 (394)
T COG2814 20 LAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAP 99 (394)
T ss_pred HHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 56666677777788889999999999999999999999999999999999999999999999988888888888877753
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012627 321 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 400 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (459)
+.+.+++.=.+.+...+..+ ++...+..++.|+++|++++++.+....+...++.++..++.+..|
T Consensus 100 -------------~f~~Ll~aR~~~g~a~G~f~-~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G 165 (394)
T COG2814 100 -------------SFAVLLLARALAGLAHGVFW-SIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG 165 (394)
T ss_pred -------------cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh
Confidence 23455566666666666555 4446677899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhcC
Q 012627 401 FGIFLVFGGL-VVIMSAFIYFFLP 423 (459)
Q Consensus 401 ~~~~~~~~~~-~~~~~~~~~~~~~ 423 (459)
|...+..... ..+..+..+..+|
T Consensus 166 WR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 166 WRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8776555444 4444445566677
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.2e-11 Score=110.98 Aligned_cols=172 Identities=12% Similarity=0.137 Sum_probs=119.5
Q ss_pred HhHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHH
Q 012627 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 320 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
...+....+........|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+.....++..+.....
T Consensus 10 ~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~ 89 (392)
T PRK10473 10 ALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAE 89 (392)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhC
Confidence 34445555555666778888888999999999999999999999999999999999999988777666665555444321
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012627 321 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 400 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (459)
..+..++...+.+.+.+... +....+..|.+|+++|+++.++.+....++..+++.+.+.+.+..+
T Consensus 90 -------------~~~~~~~~~~l~g~~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g 155 (392)
T PRK10473 90 -------------TSSLFLAGRFLQGIGAGCCY-VVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP 155 (392)
T ss_pred -------------cHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 11222333333343333222 2335566799999999999999999999998999988888777767
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhcCCCC
Q 012627 401 FGIFLVF-GGLVVIMSAFIYFFLPETK 426 (459)
Q Consensus 401 ~~~~~~~-~~~~~~~~~~~~~~~~~~~ 426 (459)
+...+.. ..+..+..++.....+|++
T Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 156 WQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 6554443 3444444444455666654
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-10 Score=109.82 Aligned_cols=161 Identities=7% Similarity=0.001 Sum_probs=112.2
Q ss_pred hHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHH
Q 012627 242 PAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLA 321 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 321 (459)
..+.............|.+.+++|++..+.++......++..++.++.|++.||+|||+.+..+.....++..+....
T Consensus 15 ~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~-- 92 (394)
T PRK03699 15 SYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS-- 92 (394)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc--
Confidence 333333334556667788888899999999999999999999999999999999999998877666665555544432
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHh-hhh
Q 012627 322 LEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALC-HLK 400 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~ 400 (459)
+..+..++...+.+.+.+...+ ....++.|.+|++.|+.+.+..+....+++.++|.+.+.+.+ ..+
T Consensus 93 -----------~~~~~~~~~~~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g 160 (394)
T PRK03699 93 -----------HSLALFSIAMFVLGVVSGITMS-IGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE 160 (394)
T ss_pred -----------chHHHHHHHHHHHHHhhHhhcc-chhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1123334444455555444443 334556799999999999998888888888899988888765 346
Q ss_pred HHHHHHHHHHHHHHHH
Q 012627 401 FGIFLVFGGLVVIMSA 416 (459)
Q Consensus 401 ~~~~~~~~~~~~~~~~ 416 (459)
|...+...++..+...
T Consensus 161 w~~~f~~~~~~~~~~~ 176 (394)
T PRK03699 161 WYWVYACIGLVYVAIF 176 (394)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6655554444433333
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.3e-11 Score=111.57 Aligned_cols=151 Identities=9% Similarity=0.017 Sum_probs=109.2
Q ss_pred cccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHh---h-hhHHHHHHHHHHhhhhhhhh
Q 012627 26 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC---A-VHISMLLLGRIFLGMGIGFG 101 (459)
Q Consensus 26 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~-~~~~~l~~~r~l~G~~~g~~ 101 (459)
+|.+......+.........++.+++|+++||+|||+++..+.++..++.+.... . ++.+.+++..++.|++.+..
T Consensus 281 ~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 360 (438)
T PRK09952 281 LGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMV 360 (438)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 3444444455555666677888899999999999999998887766655443322 1 23445555667778888888
Q ss_pred cchhhHHHHhcCCCccchhHHHHHH-HHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCCh
Q 012627 102 NQAVPLYLSEMAPAKIRGAVNQLFQ-LTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETP 176 (459)
Q Consensus 102 ~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p 176 (459)
.+...+++.|.+|++.|+.+.++.. .+..+|..++|.+..........+|+..+...++..++..+..+.++|+.
T Consensus 361 ~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~ 436 (438)
T PRK09952 361 VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDNQ 436 (438)
T ss_pred HHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHccccc
Confidence 8888999999999999998888854 44558888999886555443334588888888887777766666677643
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.7e-11 Score=115.42 Aligned_cols=170 Identities=14% Similarity=0.105 Sum_probs=121.0
Q ss_pred HhHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHH
Q 012627 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 320 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
+..+.............|.+.+++|.+..+.+.......++..++.++.|++.||+|||+.+..+..+..++.++.....
T Consensus 27 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 106 (496)
T PRK03893 27 LGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAP 106 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555566677888888999999999999999999999999999999999999988877766666666555431
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012627 321 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 400 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (459)
..+...+...+.+.+.+... +....+..|.+|++.|+.+.++......++..+++.+.+.+.+..+
T Consensus 107 -------------~~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 172 (496)
T PRK03893 107 -------------GYWTLFIARLVIGMGMAGEY-GSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG 172 (496)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 12333344444444444333 3334556799999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Q 012627 401 FGIFLVFGGLVVIMSAFIYFFLPE 424 (459)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~ 424 (459)
+...+.+..+..+..++.....|+
T Consensus 173 w~~~f~~~~~~~~~~~~~~~~~p~ 196 (496)
T PRK03893 173 WRALFFIGILPIIFALWLRKNLPE 196 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 776665544444433333333444
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.5e-11 Score=109.58 Aligned_cols=140 Identities=10% Similarity=0.020 Sum_probs=122.4
Q ss_pred cccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcchh
Q 012627 26 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 105 (459)
Q Consensus 26 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 105 (459)
.|.++.+.|++.+...++..++.++++++.||+|+|+.+.++.++.++..++.++++|.+.+++.+++.|++.+...+..
T Consensus 235 ~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~ 314 (382)
T TIGR00902 235 AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAA 314 (382)
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhcCCCccchhHHHHHH-HHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHh
Q 012627 106 PLYLSEMAPAKIRGAVNQLFQ-LTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG 169 (459)
Q Consensus 106 ~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~ 169 (459)
..++.+. |+++|++..++++ ...++|.++|+.+++... +..|+ ..|++.++++++..++.
T Consensus 315 ~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~--~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 315 MRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIY--PTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccH-HHHHHHHHHHHHHHHHH
Confidence 9999998 9999999999986 578899999999965554 44465 56777777776655443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.1e-09 Score=98.00 Aligned_cols=102 Identities=14% Similarity=0.141 Sum_probs=93.1
Q ss_pred HHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcchhhHHHHhcCCCc
Q 012627 37 TSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAK 116 (459)
Q Consensus 37 ~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 116 (459)
.++-+....+++++.+.+.|+.|+|+.++++...+....+..-+- |-+-+++.-.+.|+|.+..+..--.+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 788888889999999999999999999999999999888877554 5677899999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH
Q 012627 117 IRGAVNQLFQLTTCLGILVANLI 139 (459)
Q Consensus 117 ~r~~~~~~~~~~~~~G~~lg~~~ 139 (459)
.+.+..++..+....+.++|..+
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~ 157 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGII 157 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHh
Confidence 99999999999999999999776
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-10 Score=111.37 Aligned_cols=170 Identities=18% Similarity=0.098 Sum_probs=120.7
Q ss_pred HhHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHH
Q 012627 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 320 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
+..+......+....+.|.+.+++|.++.+.++......++..++.++.|+++||+|||+.+..+..+..++.++....
T Consensus 17 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~- 95 (471)
T PRK10504 17 FGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS- 95 (471)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh-
Confidence 4455555566677788999999999999999998888889999999999999999999998876665555554443321
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012627 321 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 400 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (459)
...+..++...+.+.+.+... +....+..|.+|++.|+++.|+.+....++..+++.+.+.+.++.+
T Consensus 96 ------------~~~~~l~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g 162 (471)
T PRK10504 96 ------------GTLNELLLARVLQGVGGAMMV-PVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS 162 (471)
T ss_pred ------------CCHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc
Confidence 112333444444555544333 3445556799999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhcCC
Q 012627 401 FGIFLVFGGLVVIMSA-FIYFFLPE 424 (459)
Q Consensus 401 ~~~~~~~~~~~~~~~~-~~~~~~~~ 424 (459)
+...+.....+.+.+. +.....++
T Consensus 163 w~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 163 WHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7665555443333333 33333343
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-10 Score=111.49 Aligned_cols=162 Identities=15% Similarity=0.198 Sum_probs=108.5
Q ss_pred HHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 012627 253 ILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPK 332 (459)
Q Consensus 253 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (459)
.....|.+. +.|.++.+.++......++..++.++.|+++||+|||+.+..+..+..++.++...... ..
T Consensus 46 ~~~~~p~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 115 (438)
T TIGR00712 46 FALAMPYLV-EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPW---------AT 115 (438)
T ss_pred HHhhhHHHH-HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcccc---------cc
Confidence 445566554 46999999999999999999999999999999999999887766666555554332210 00
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHH-H
Q 012627 333 GIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALC-HLKFGIFLVFGG-L 410 (459)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~ 410 (459)
...+...+...+.+.+.+..+++. .....|.+|+++|++++++.+....+++.+++.+.+...+ ..+|...+...+ +
T Consensus 116 ~~~~~l~~~~~l~g~~~g~~~~~~-~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~ 194 (438)
T TIGR00712 116 SSIAIMFVLLFLNGWFQGMGWPPC-GRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAIC 194 (438)
T ss_pred chHHHHHHHHHHHHHHhhcchHHH-HHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 112223333344444444444333 3445689999999999999999999999999888876554 345665555444 3
Q ss_pred HHHHHHHHHHhcCCC
Q 012627 411 VVIMSAFIYFFLPET 425 (459)
Q Consensus 411 ~~~~~~~~~~~~~~~ 425 (459)
+.+..++..++.+|+
T Consensus 195 ~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 195 AIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHHHHHHHhccCC
Confidence 344444555556654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.1e-11 Score=110.08 Aligned_cols=142 Identities=13% Similarity=0.080 Sum_probs=114.8
Q ss_pred cccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcchh
Q 012627 26 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 105 (459)
Q Consensus 26 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 105 (459)
.|.+..+.++..+...++..+++++.|++.||+|+|+++..+..+.+++.+... + .......+++.|++.....|..
T Consensus 230 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~ 306 (381)
T PRK03633 230 QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVA 306 (381)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHH
Confidence 367777889999999999999999999999999999999988888877665443 2 2344557788888878888999
Q ss_pred hHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhccc
Q 012627 106 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL 172 (459)
Q Consensus 106 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l 172 (459)
.+++.|..|+++++...+......++|.++||.+++.. .+..+|++.|.+.+...++..+..++.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l--~~~~g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 307 MAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAML--MQNYSDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence 99999999988888888888889999999999995544 344579999999888877665554443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.4e-10 Score=108.79 Aligned_cols=166 Identities=10% Similarity=0.025 Sum_probs=106.3
Q ss_pred HHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHH
Q 012627 243 AFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLAL 322 (459)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (459)
.+......+....+.|.+.+++|++..+.+.......++..++.++.|+++||+|||+.+..+.....++.++.....
T Consensus 45 ~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-- 122 (476)
T PLN00028 45 FFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS-- 122 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc--
Confidence 333333444555667778888999999999988888899999999999999999999988776665555554443321
Q ss_pred HhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHh----h
Q 012627 323 EFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALC----H 398 (459)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~ 398 (459)
..+..++...+.+++.+. ..+. ..+++|.+|++.|+.+.|+.+...+++..+++.+.+.+.. .
T Consensus 123 -----------s~~~l~~~r~l~G~~~~~-~~~~-~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~ 189 (476)
T PLN00028 123 -----------SATGFIAVRFFIGFSLAT-FVSC-QYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDA 189 (476)
T ss_pred -----------CHHHHHHHHHHHHHHHHh-hHHH-HHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 112222333333333332 2222 3345799999999999999988888888777766654432 1
Q ss_pred -----hhHHHHHHHHHHHHHHHHHHHHhcC
Q 012627 399 -----LKFGIFLVFGGLVVIMSAFIYFFLP 423 (459)
Q Consensus 399 -----~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (459)
.+|...+.+.+++.++..+..++.+
T Consensus 190 ~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 190 GAPSFTAWRIAFFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 3565555554444433333333343
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-10 Score=110.82 Aligned_cols=171 Identities=13% Similarity=0.107 Sum_probs=123.7
Q ss_pred HhHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHH
Q 012627 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 320 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
+..+....-......-.|.+.+++|.+..+.++....+.++..++.+..|+++||+|||+.+..+..+..++.+.....
T Consensus 13 ~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a- 91 (495)
T PRK14995 13 LVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFS- 91 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHc-
Confidence 5556666666677778899999999999999999999999999999999999999999999988888777777665543
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeeccc-CCcccccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 012627 321 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSEL-FPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL 399 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 399 (459)
++.+..++.-.+.+.+.+... +.......+. .|+++|+++.|+......++..++|.+.+.+.++.
T Consensus 92 ------------~~~~~li~~r~l~G~g~~~~~-~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~ 158 (495)
T PRK14995 92 ------------PTASWLIATRALLAIGAAMIV-PATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF 158 (495)
T ss_pred ------------CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 122334444444555444333 2222223344 47789999999999999999999999999999988
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHhcCCC
Q 012627 400 KFGIFLVFGGLV-VIMSAFIYFFLPET 425 (459)
Q Consensus 400 ~~~~~~~~~~~~-~~~~~~~~~~~~~~ 425 (459)
+|.+.+...... .+...+....+|+.
T Consensus 159 gwr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 159 YWGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 877665554433 33333444555554
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-10 Score=110.56 Aligned_cols=162 Identities=16% Similarity=0.200 Sum_probs=105.8
Q ss_pred HHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 012627 253 ILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPK 332 (459)
Q Consensus 253 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (459)
+....|.+.++ |++..+.++......++..++.++.|+++||+|||+.+..+..+..++.++..+... ..
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~---------~~ 117 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW---------AT 117 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc---------cc
Confidence 44567776666 999999999999999999999999999999999999888777766666655544310 00
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHH-HH
Q 012627 333 GIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFL-AALCHLKFGIFLVFG-GL 410 (459)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~ 410 (459)
...+..++...+.+.+.+...++.. ....|.+|++.|++++|+.+....+++.+.+++.+ ......+|...+.+. .+
T Consensus 118 ~~~~~~~~~~~l~gi~~g~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~ 196 (452)
T PRK11273 118 SSIAVMFVLLFLCGWFQGMGWPPCG-RTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFA 196 (452)
T ss_pred ccHHHHHHHHHHHHHHHhccchHHH-HHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1122333334444555554443333 34468899999999999998888888755555443 222223455444443 33
Q ss_pred HHHHHHHHHHhcCCC
Q 012627 411 VVIMSAFIYFFLPET 425 (459)
Q Consensus 411 ~~~~~~~~~~~~~~~ 425 (459)
+.+..++..++++|+
T Consensus 197 ~~~~~~l~~~~~~~~ 211 (452)
T PRK11273 197 AILVALFAFAMMRDT 211 (452)
T ss_pred HHHHHHHHHHHccCC
Confidence 444445555666654
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-10 Score=108.13 Aligned_cols=150 Identities=11% Similarity=-0.086 Sum_probs=102.4
Q ss_pred hHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHH
Q 012627 242 PAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLA 321 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 321 (459)
..+....+......+.+.+++++|.++.+.++......++..++.++.|++.||+|||+.+..+..+..++..+......
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~ 100 (402)
T TIGR00897 21 GVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGL 100 (402)
T ss_pred HHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444455566777788889999999999999999999999999999999999999888777766665543322110
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHH-HHHHHHHHHHHhhhh
Q 012627 322 LEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFT-ALIAQAFLAALCHLK 400 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~ 400 (459)
.....+...+...+.+.+.+.... .......+.+|+++|++++|+.+....++. .+++.+.+.+.+..+
T Consensus 101 ---------~~~~~~~l~~~~~i~G~g~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g 170 (402)
T TIGR00897 101 ---------GHANYPLILLFYGIRGLGYPLFAY-SFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG 170 (402)
T ss_pred ---------cCccHHHHHHHHHHHHcchHHHHh-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 001122333333333444332222 223344578899999999999999988886 467777777776665
Q ss_pred H
Q 012627 401 F 401 (459)
Q Consensus 401 ~ 401 (459)
+
T Consensus 171 ~ 171 (402)
T TIGR00897 171 E 171 (402)
T ss_pred h
Confidence 3
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-10 Score=110.19 Aligned_cols=151 Identities=18% Similarity=0.130 Sum_probs=110.1
Q ss_pred cccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhh--hH--HHHHHHHHHhhhhhhhh
Q 012627 26 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV--HI--SMLLLGRIFLGMGIGFG 101 (459)
Q Consensus 26 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~--~~l~~~r~l~G~~~g~~ 101 (459)
.|.+.....+......+...++.+++|+++||+|||++++.+.++.+++.++.+... +. .....+-++.+.+.+..
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (479)
T PRK10077 301 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS 380 (479)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc
Confidence 455555556777778888899999999999999999999999999998887765432 11 12233344444444432
Q ss_pred -cchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhcc----ccccCchhhHHHHhhHHHHHHHHHHh-cccCCC
Q 012627 102 -NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGT----EKIHPWGWRLSLGLATVPATLMFVGG-LFLPET 175 (459)
Q Consensus 102 -~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~----~~~~~~gwr~~f~~~~~~~~~~~~~~-~~l~e~ 175 (459)
.+....++.|.+|+++|++++++......+|.++++.+.... ...+..+|++.|++.++.+++..++. ++.||+
T Consensus 381 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 460 (479)
T PRK10077 381 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 460 (479)
T ss_pred ccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccC
Confidence 367789999999999999999999999999999886553221 22335678999998888777765554 457776
Q ss_pred h
Q 012627 176 P 176 (459)
Q Consensus 176 p 176 (459)
.
T Consensus 461 ~ 461 (479)
T PRK10077 461 K 461 (479)
T ss_pred C
Confidence 4
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.4e-10 Score=105.61 Aligned_cols=168 Identities=15% Similarity=0.115 Sum_probs=117.7
Q ss_pred hHHHhhcchhHHHHhHHHHH-HHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHH
Q 012627 242 PAFQQLTGMNSILFYAPVIF-QSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 320 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
..+....+.+....+.+.++ ++.|+++.+.|+......+...+..++.|+++||+|||+.+..+.....++.+.....
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~- 96 (400)
T PRK11646 18 DNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA- 96 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh-
Confidence 34444555566666677666 5689999999999999999999999999999999999999888777777766665432
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012627 321 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 400 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (459)
+..+...+...+.+.+.+.. .+....+..|.+|+++|+++.|+.+....++..+++.+.+.+. ..+
T Consensus 97 ------------~~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g 162 (400)
T PRK11646 97 ------------HEPWLLWLSCILSGLGGTLF-DPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD 162 (400)
T ss_pred ------------ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence 11233334444444443322 2333455678999999999999999999999999999999988 556
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhcCC
Q 012627 401 FGIFLVFGGLV-VIMSAFIYFFLPE 424 (459)
Q Consensus 401 ~~~~~~~~~~~-~~~~~~~~~~~~~ 424 (459)
+...+.+.++. .+.+++..+..++
T Consensus 163 ~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 163 FRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 65554444433 3333333444554
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-10 Score=106.32 Aligned_cols=171 Identities=15% Similarity=0.114 Sum_probs=121.3
Q ss_pred hHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHH
Q 012627 242 PAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLA 321 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 321 (459)
..+.............|.+.+++|.+..+.++......++..++.++.|++.||+|||+.+..+..+..++.++....
T Consensus 11 ~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~-- 88 (382)
T PRK10091 11 GTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS-- 88 (382)
T ss_pred HHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh--
Confidence 333444444556667888888999999999999999999999999999999999999999888877777666655443
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 012627 322 LEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKF 401 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (459)
++.+..++...+.+.+.+... +.......|.+|+++|+++.+.......++..+++++.+.+.+..++
T Consensus 89 -----------~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw 156 (382)
T PRK10091 89 -----------SSYLMLAIGRLVSGFPHGAFF-GVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSW 156 (382)
T ss_pred -----------CcHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccH
Confidence 112334444444454444333 23344557889988899999999888899999999998888887777
Q ss_pred HHHHHHHHHHHH-HHHHHHHhcCCCC
Q 012627 402 GIFLVFGGLVVI-MSAFIYFFLPETK 426 (459)
Q Consensus 402 ~~~~~~~~~~~~-~~~~~~~~~~~~~ 426 (459)
...+...++..+ ..+......|+.+
T Consensus 157 r~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 157 RYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 665554444333 3333445566643
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.20 E-value=5e-11 Score=110.33 Aligned_cols=160 Identities=15% Similarity=0.125 Sum_probs=115.3
Q ss_pred HHhhcchhHHHHhHH-HHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHH
Q 012627 244 FQQLTGMNSILFYAP-VIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLAL 322 (459)
Q Consensus 244 ~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (459)
+.............| .+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+..+..++.++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--- 82 (352)
T PF07690_consen 6 FLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA--- 82 (352)
T ss_dssp HHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh---
Confidence 333444455666667 5556799999999999999999999999999999999999998887777777773333321
Q ss_pred HhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 012627 323 EFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFG 402 (459)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (459)
...+..++...+.+.+.+... +....+..|.+|+++|+++.++.+....++..+++.+.+.+.+..++.
T Consensus 83 ----------~~~~~~~~~~~l~g~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~ 151 (352)
T PF07690_consen 83 ----------SNFWLLLIARFLLGIGSGFFS-PASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWR 151 (352)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHC
T ss_pred ----------hhHHHHhhhcccccccccccc-ccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccc
Confidence 112344455555555544444 444666689999999999999999999999999999999988777765
Q ss_pred HHHHHHHHHHHHHHH
Q 012627 403 IFLVFGGLVVIMSAF 417 (459)
Q Consensus 403 ~~~~~~~~~~~~~~~ 417 (459)
..+...++..+...+
T Consensus 152 ~~~~~~~~~~~~~~i 166 (352)
T PF07690_consen 152 WAFLISAILSLIAAI 166 (352)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhh
Confidence 555444444444443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.20 E-value=5e-11 Score=115.33 Aligned_cols=162 Identities=19% Similarity=0.079 Sum_probs=112.8
Q ss_pred HHHhHHHHHHHcCCC--------CCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHh
Q 012627 253 ILFYAPVIFQSLGFG--------SGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEF 324 (459)
Q Consensus 253 ~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (459)
.....|....+.+.+ ..+.++......++..++.++.|+++||+|||+.+..+..+..++.++.....
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~---- 122 (481)
T TIGR00879 47 IGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA---- 122 (481)
T ss_pred hhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc----
Confidence 333445444454444 78899999999999999999999999999999988877776666665554321
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHH---HHHHhhhhH
Q 012627 325 GEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAF---LAALCHLKF 401 (459)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~ 401 (459)
.....+..++...+.+.+.+... +....++.|.+|+++|+++.++.+....+|..+++.+. ....+..++
T Consensus 123 ------~~~~~~~~~~~r~l~G~~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w 195 (481)
T TIGR00879 123 ------FALSVEMLIVGRVLLGIGVGIAS-ALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGW 195 (481)
T ss_pred ------cccchHHHHHHHHHHHhhhhHHH-hHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccH
Confidence 11112334445555555554443 34456678999999999999999999999999999988 444455566
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Q 012627 402 GIFLVFGGLVVIMSAFIYFFLPET 425 (459)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~ 425 (459)
...+.+.++..+..++..++++|+
T Consensus 196 ~~~f~~~~~~~~~~~~~~~~l~~~ 219 (481)
T TIGR00879 196 RIPLGLQLIPAGLLFLGLFFLPES 219 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 666666555555555556666664
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-10 Score=108.19 Aligned_cols=159 Identities=21% Similarity=0.206 Sum_probs=115.2
Q ss_pred HHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 012627 253 ILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPK 332 (459)
Q Consensus 253 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (459)
.....|.+.+++|.++.+.++......++..++.++.|++.||+|||+.+..+..+..++........
T Consensus 10 ~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~------------ 77 (377)
T PRK11102 10 YLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ------------ 77 (377)
T ss_pred HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc------------
Confidence 44567788888999999999999999999999999999999999999988877777666666554431
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-HH
Q 012627 333 GIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGG-LV 411 (459)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 411 (459)
..+.......+.+.+.+... +....+..|.+|+++|+++.++.+....++..+++.+.+.+.+..++...+...+ ++
T Consensus 78 -~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 155 (377)
T PRK11102 78 -TIDQLIYMRFLHGLAAAAAS-VVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAA 155 (377)
T ss_pred -cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 12233333444444444332 3334556799999999999999999999999999999999888777665554433 33
Q ss_pred HHHHHHHHHhcCCC
Q 012627 412 VIMSAFIYFFLPET 425 (459)
Q Consensus 412 ~~~~~~~~~~~~~~ 425 (459)
.+..++..+..+|+
T Consensus 156 ~~~~~~~~~~~~~~ 169 (377)
T PRK11102 156 ILAAALVFFFIPET 169 (377)
T ss_pred HHHHHHHHHhCCcc
Confidence 34444444555654
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.8e-10 Score=104.29 Aligned_cols=161 Identities=10% Similarity=-0.029 Sum_probs=111.4
Q ss_pred hHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 012627 251 NSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPL 330 (459)
Q Consensus 251 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (459)
..+....|.+.+++|.++.+.++..+...++..++++..|+++||+|||+.+.........+.. .....
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~~---------- 76 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLDP---------- 76 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHHh----------
Confidence 3355667888889999999999999999999999999999999999988765433322222211 11110
Q ss_pred CchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HH
Q 012627 331 PKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVF-GG 409 (459)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 409 (459)
...+..++.-.+.+.+.+. ..+. ....+|.+|+++|+++.++.+....+|..+++.+.+.+.++.+|...+.. +.
T Consensus 77 --~~~~~l~~~R~l~G~g~~~-~~~~-~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~ 152 (368)
T TIGR00903 77 --FNYEWLLACQLLAALGQPF-LLNA-FAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAA 152 (368)
T ss_pred --ccHHHHHHHHHHHHhHhHH-HHHH-HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 1123344444444544442 2222 23346889999999999999999999999999999999888888876655 44
Q ss_pred HHHHHHHHHHHhcCCCC
Q 012627 410 LVVIMSAFIYFFLPETK 426 (459)
Q Consensus 410 ~~~~~~~~~~~~~~~~~ 426 (459)
+..+..++.++.+||.+
T Consensus 153 l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 153 VAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 44455555666777654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.7e-10 Score=105.56 Aligned_cols=162 Identities=15% Similarity=0.111 Sum_probs=110.9
Q ss_pred hHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 012627 251 NSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPL 330 (459)
Q Consensus 251 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (459)
.......|.+.+++|.++.+.++......++..++.++.|+++||+|||+.+..+.....++.+......
T Consensus 25 ~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~---------- 94 (394)
T PRK11652 25 TIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAH---------- 94 (394)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc----------
Confidence 3344456778888999999999999999999999999999999999999988777666655555443321
Q ss_pred CchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 012627 331 PKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGL 410 (459)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (459)
..+..++...+.+.+.+.. .+....+..|.++.+.++.+.+..+....++..+++.+.+.+.+..++...+...++
T Consensus 95 ---~~~~l~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~ 170 (394)
T PRK11652 95 ---SLTVLIAASAIQGLGTGVG-GVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLL 170 (394)
T ss_pred ---cHHHHHHHHHHHHhhhhHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 1222333333333333322 233344556888888889999998888888888999999988887776655554433
Q ss_pred -HHHHHHHHHHhcCCCC
Q 012627 411 -VVIMSAFIYFFLPETK 426 (459)
Q Consensus 411 -~~~~~~~~~~~~~~~~ 426 (459)
..+...+..++.||++
T Consensus 171 ~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 171 LGAGVTFSMARWMPETR 187 (394)
T ss_pred HHHHHHHHHHHhCCccC
Confidence 3333344445566643
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.4e-10 Score=106.19 Aligned_cols=169 Identities=12% Similarity=0.077 Sum_probs=121.6
Q ss_pred hHHHhhcchhHHHHhHHHHHH-HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH-hCCcceeehhhHHHHHHHHHHHHH
Q 012627 242 PAFQQLTGMNSILFYAPVIFQ-SLGFGSGAALYSSVITGIALCIAALISMAFVDK-FGRRAFFLEAGTEMIIYMVIVAIT 319 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~ 319 (459)
..+..-..++....+++.|++ ++|++..++............+..+++|+++|| +||||.+..+..+..++.+++.+.
T Consensus 22 ~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~ 101 (489)
T PRK10207 22 VELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS 101 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh
Confidence 344555677777778888875 499999888888888888888888899999999 999999999988888887766653
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCccc--ccccchHHHHHHHHHHHHHHHHHHHHHh
Q 012627 320 LALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEM--RSAGQSVVVCNNLLFTALIAQAFLAALC 397 (459)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 397 (459)
. .......+...+.+.+.+... +....+..|.+|++. |+.+.++.+...++|..+++.+.+++.+
T Consensus 102 ~------------~~~~ll~~~~~l~~ig~g~~~-~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~ 168 (489)
T PRK10207 102 L------------LKPDLIFIALGTIAVGNGLFK-ANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD 168 (489)
T ss_pred c------------cchhHHHHHHHHHHhcccccc-CCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 001112223333444444333 344566789998774 5778999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcC
Q 012627 398 HLKFGIFLVFGGLVVIMSAFIYFFLP 423 (459)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (459)
+.+|...+....+..+.+++.+...+
T Consensus 169 ~~gw~~~F~i~~i~~~~~~~~~~~~~ 194 (489)
T PRK10207 169 KFGYSVTYNLCGAGLIIALLVYFACR 194 (489)
T ss_pred hhChHHHHHHHHHHHHHHHHHHHHcc
Confidence 88877766665555555555444443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=8e-11 Score=113.27 Aligned_cols=145 Identities=10% Similarity=-0.044 Sum_probs=103.8
Q ss_pred HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 012627 263 SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVI 342 (459)
Q Consensus 263 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (459)
+++++..+.+.+.....++..++.++.|++.||+|+|+.+..+..+..++.++...... ...+..++.-
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~r 138 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG-----------GGIALVVFCR 138 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH-----------cCchHHHHHH
Confidence 46788888899999999999999999999999999999888777665555544432210 1112334444
Q ss_pred HHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHH
Q 012627 343 CLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL-KFGIFLVFGGLVVIMSAFIY 419 (459)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 419 (459)
.+.+.+.+... +....+..|.+|+++|+++.++......+|..+++.+.+.+.+.. ++...+.+.++..+...+.+
T Consensus 139 ~~~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~ 215 (465)
T TIGR00894 139 VIQGLAQGSVS-PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLW 215 (465)
T ss_pred HHHHHhcccch-hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHH
Confidence 44555544333 444566789999999999999999999999999999999998874 76655554444444333333
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-10 Score=112.09 Aligned_cols=171 Identities=15% Similarity=0.190 Sum_probs=122.8
Q ss_pred HhHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHH
Q 012627 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 320 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
+..+.............|.+.+++|.+..+.++......++..++.++.|++.||+|||+.+..+..+..++.++....
T Consensus 9 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~- 87 (485)
T TIGR00711 9 LGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA- 87 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc-
Confidence 3444455555667777899989999999999999999999999999999999999999998887777666665554432
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012627 321 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 400 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (459)
+..+..++...+.+.+.+.. .+....+..|.+|++.|+++.++......++..+++.+.+.+.++.+
T Consensus 88 ------------~~~~~l~~~~~~~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 154 (485)
T TIGR00711 88 ------------PNLELMIIFRVIQGFGGGPL-IPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH 154 (485)
T ss_pred ------------CCHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC
Confidence 11233344444444444433 34445667899999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhcCCC
Q 012627 401 FGIFLVFGGLV-VIMSAFIYFFLPET 425 (459)
Q Consensus 401 ~~~~~~~~~~~-~~~~~~~~~~~~~~ 425 (459)
+...+...... .+...+..+..+++
T Consensus 155 w~~~f~~~~~~~~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 155 WRWIFLINVPIGIIVVVVAFFILPRD 180 (485)
T ss_pred ceehhhhhhHHHHHHHHHHHHHcCCc
Confidence 66554443333 33333334445543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.7e-10 Score=106.68 Aligned_cols=166 Identities=14% Similarity=0.063 Sum_probs=112.5
Q ss_pred hcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcC
Q 012627 247 LTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGE 326 (459)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (459)
......+....|.+.+++|.++.+.+.......++..++.++.|+++||+|||+.+..+.....++........
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~------ 99 (406)
T PRK15402 26 YIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQ------ 99 (406)
T ss_pred HhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHc------
Confidence 33444445556777788999999999999999999999999999999999999988777666655555443321
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 012627 327 GKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLV 406 (459)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (459)
..+..+....+.+.+.+.. .+.......|.+|++.|.++.++......++..++|.+.+.+.++.++...+.
T Consensus 100 -------~~~~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~ 171 (406)
T PRK15402 100 -------SIEQFTLLRFLQGIGLCFI-GAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFV 171 (406)
T ss_pred -------cHHHHHHHHHHHHhHhhhH-HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHH
Confidence 1222333333333333322 23335556789999999998898888888888999999888888777665554
Q ss_pred HHHHHHHHH-HHHHHhcCCCC
Q 012627 407 FGGLVVIMS-AFIYFFLPETK 426 (459)
Q Consensus 407 ~~~~~~~~~-~~~~~~~~~~~ 426 (459)
+.+++.+.+ ...+...||++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 172 LFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHHHHHHHHHHHhCCCCC
Confidence 444443333 33444556554
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.5e-10 Score=105.38 Aligned_cols=158 Identities=10% Similarity=0.060 Sum_probs=111.4
Q ss_pred HhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchh
Q 012627 255 FYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGI 334 (459)
Q Consensus 255 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (459)
.-+|.+.++++.+..+.+.......++..++.++.|+++||+|||+.+..+..+..++.++.... +.
T Consensus 37 p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-------------~~ 103 (413)
T PRK15403 37 PGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT-------------TS 103 (413)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-------------CC
Confidence 33455667789999999999999999999999999999999999998887766666555544432 11
Q ss_pred HHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 012627 335 GIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIM 414 (459)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (459)
.+..++.-.+.+.+.+. ..+....+..|.+|++.+++++++.+....++..+++.+.+.+.+..+|...+...++..++
T Consensus 104 ~~~l~~~r~l~Gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i 182 (413)
T PRK15403 104 MTQFLIARFIQGTSICF-IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLI 182 (413)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 22333333344433332 22333456678999999999999999999999999999888888777776666555554444
Q ss_pred HHH-HHHhcCCCC
Q 012627 415 SAF-IYFFLPETK 426 (459)
Q Consensus 415 ~~~-~~~~~~~~~ 426 (459)
+.+ ..+..||++
T Consensus 183 ~~~~~~~~lp~~~ 195 (413)
T PRK15403 183 AFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHhCCCCc
Confidence 443 344567654
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.2e-10 Score=103.83 Aligned_cols=155 Identities=11% Similarity=0.037 Sum_probs=106.0
Q ss_pred HHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHH
Q 012627 257 APVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGI 336 (459)
Q Consensus 257 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (459)
.|.+.+++|.++.+.++......++..++.++.|+++||+|||+.+..+..+..++.+...... + .+
T Consensus 29 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~------------~-~~ 95 (401)
T PRK11043 29 FKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE------------S-AA 95 (401)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc------------C-HH
Confidence 3445577999999999999999999999999999999999999988776665555554443321 1 12
Q ss_pred HHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 012627 337 FLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSA 416 (459)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (459)
..++...+.+.+.+... +.......|.+|++.++...+..+....++..+++.+.+.+.+..++...+....++.+...
T Consensus 96 ~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~ 174 (401)
T PRK11043 96 QLLVLRFVQAVGVCSAA-VIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLI 174 (401)
T ss_pred HHHHHHHHHHhhhHHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 22333333333322222 22234457889988888888888888889999999999999888787665555444444444
Q ss_pred HHHHhcCCC
Q 012627 417 FIYFFLPET 425 (459)
Q Consensus 417 ~~~~~~~~~ 425 (459)
+..+..++.
T Consensus 175 ~~~~~~~~~ 183 (401)
T PRK11043 175 LPTLRLKPS 183 (401)
T ss_pred HHHHHcCCC
Confidence 444445443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.7e-10 Score=108.26 Aligned_cols=152 Identities=20% Similarity=0.213 Sum_probs=105.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHH
Q 012627 267 GSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFV 346 (459)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (459)
+..+.+++.....++.+++.++.+++.||+|||+.+..+..+..++.++..... + ..+....+..++.-.+.+
T Consensus 54 ~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~------~-~~~~~~~~~~~~~r~l~G 126 (502)
T TIGR00887 54 PSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSP------G-SSPKSVMATLCFWRFWLG 126 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcc------C-cccchHHHHHHHHHHHHH
Confidence 344567888889999999999999999999999988877766666655444321 0 001111234455555556
Q ss_pred HHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHh-----------------------hhhHHH
Q 012627 347 LAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALC-----------------------HLKFGI 403 (459)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~ 403 (459)
++.+...+ ....+..|.+|++.|+++.++.+....+|..+++.+...+.. ..+|..
T Consensus 127 ~~~g~~~~-~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~ 205 (502)
T TIGR00887 127 VGIGGDYP-LSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRI 205 (502)
T ss_pred HHHhhhhH-HHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHH
Confidence 66554443 446777899999999999999999998988888877665432 124666
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC
Q 012627 404 FLVFGGLVVIMSAFIYFFLPETK 426 (459)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~ 426 (459)
.+.+.++..++..+..+++||+.
T Consensus 206 ~~~~~~ip~~i~~~~~~~lpESp 228 (502)
T TIGR00887 206 LIGFGAVPALLALYFRLTIPETP 228 (502)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCH
Confidence 66666666666666667788863
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-09 Score=102.14 Aligned_cols=157 Identities=16% Similarity=0.179 Sum_probs=111.1
Q ss_pred hHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 012627 251 NSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPL 330 (459)
Q Consensus 251 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (459)
.......+.+.++++.++.+.++......+...+..++.|++.||+|||+++..+..+..++.+.+....
T Consensus 20 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~---------- 89 (393)
T PRK11195 20 NALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI---------- 89 (393)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH----------
Confidence 3344445556678888888889999999999999999999999999999999988877766655443321
Q ss_pred CchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 012627 331 PKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGL 410 (459)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (459)
. . ++...+.+.+.+ ...|....++.|.+|+++|++++|+......++..++|.+.+.+.+.. +...+...+.
T Consensus 90 --~--~--~~~r~l~G~~~a-~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~ 161 (393)
T PRK11195 90 --H--P--LLAYGLVGIGAA-AYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCAL 161 (393)
T ss_pred --H--H--HHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 0 1 222233344433 334555667789999999999999999999999999999999998764 3333333333
Q ss_pred HHHHHHHHHHhcCCC
Q 012627 411 VVIMSAFIYFFLPET 425 (459)
Q Consensus 411 ~~~~~~~~~~~~~~~ 425 (459)
+.+.+.+....+||.
T Consensus 162 ~~~~~~~~~~~l~~~ 176 (393)
T PRK11195 162 IYLLAALFNLFIPRL 176 (393)
T ss_pred HHHHHHHHHhcCCCC
Confidence 334444445566654
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-09 Score=103.55 Aligned_cols=149 Identities=11% Similarity=0.074 Sum_probs=114.0
Q ss_pred ccccCchhHHHHHH-HhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHH---Hhh-hhHHHHHHHHHHhhhhhh
Q 012627 25 YCKYDNQVLTLFTS-SLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILN---ACA-VHISMLLLGRIFLGMGIG 99 (459)
Q Consensus 25 ~~~~s~~~~~~~~s-~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~l~G~~~g 99 (459)
..|.+..+.+++.. ...++..++.+++|+++||+|+|+.+.++.++.+++.++. +.. ++.+.+.+.-++..++.|
T Consensus 252 ~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g 331 (491)
T PRK11010 252 GVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGG 331 (491)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 46778888899974 6678999999999999999999998877666555544332 232 455555556677666666
Q ss_pred hhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCC
Q 012627 100 FGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPET 175 (459)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~ 175 (459)
...+...++..+..+++.+++..++.+...++|..+++.+++.. .+..||+..|.+.++.+++..++..+++++
T Consensus 332 ~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l--~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 332 MGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWF--VEAHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66677788899999999999999999999999998887774433 344589999999998888877666555543
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.9e-10 Score=102.28 Aligned_cols=142 Identities=15% Similarity=0.074 Sum_probs=102.0
Q ss_pred hHHHhhcchhHHHHhHHH-HHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHH
Q 012627 242 PAFQQLTGMNSILFYAPV-IFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 320 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
..+..+........+.|. +.+++|+++.+.++......++..++.++.|+++||+|||+.+..+..+..++.++.....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~ 88 (366)
T TIGR00886 9 GFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV 88 (366)
T ss_pred HHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555667777885 5567999999999999999999999999999999999999998888777777666554431
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 012627 321 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALC 397 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 397 (459)
...+...+...+.+.+.+ ...+ ...+..|.+|+++|+++.++......++..+++.+.+.+..
T Consensus 89 ------------~~~~~~~~~~~~~g~~~~-~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 89 ------------QSYSVLLLLRLFIGIAGG-SFAS-CMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred ------------hhHHHHHHHHHHHHHhch-hhHh-HHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 012333333333333322 2333 34566799999999999999887777887777777666554
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.2e-10 Score=107.77 Aligned_cols=136 Identities=15% Similarity=0.085 Sum_probs=105.1
Q ss_pred cccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHH--HHHHh--hhhHHHHHHHHHHhhhhhhhh
Q 012627 26 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGA--ILNAC--AVHISMLLLGRIFLGMGIGFG 101 (459)
Q Consensus 26 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~--~~~~~--~~~~~~l~~~r~l~G~~~g~~ 101 (459)
+|.++.+.+...+...++..++.+++|+++||+|||+.+..+..+..+.. +...+ .++.+.+.+..++.|++.+..
T Consensus 250 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 329 (394)
T TIGR00883 250 LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMY 329 (394)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 45667778999999999999999999999999999998776555444333 22222 256777788889999999999
Q ss_pred cchhhHHHHhcCCCccchhHHHH-HHHHHHHHHHHHHHHHhccccccCch-hhHHHHhhHHHHH
Q 012627 102 NQAVPLYLSEMAPAKIRGAVNQL-FQLTTCLGILVANLINYGTEKIHPWG-WRLSLGLATVPAT 163 (459)
Q Consensus 102 ~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~lg~~~~~~~~~~~~~g-wr~~f~~~~~~~~ 163 (459)
.+...+++.|.+|+++|+++.++ ...+..+|..++|.+++.... ..| |++.++..++.++
T Consensus 330 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~--~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 330 TGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVA--MTGDWYAIGYYLAALAL 391 (394)
T ss_pred hhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHH--HcCcchhHHHHHHHHHH
Confidence 99999999999999999999998 456677888899988544433 334 8877766665444
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.11 E-value=2e-09 Score=101.18 Aligned_cols=143 Identities=8% Similarity=-0.126 Sum_probs=105.5
Q ss_pred HHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHH
Q 012627 243 AFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLAL 322 (459)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (459)
++.............|.+.+++|.+..+.++......++..++++..+++.||+|||+.+..+..+..++..+......
T Consensus 12 f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~- 90 (410)
T TIGR00885 12 FALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE- 90 (410)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh-
Confidence 3333333344556778887889999999999999999999999999999999999999998888877777665433210
Q ss_pred HhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHH
Q 012627 323 EFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAAL 396 (459)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (459)
....+..+....+.+.+.+....+. ..+..+..|++.|++..++.+....+|..+++.+.+.+.
T Consensus 91 ---------~~~~~~~l~~~~l~G~g~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 91 ---------IMNYTLFLVGLFILTAGLGFLETAA-NPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred ---------hccHHHHHHHHHHHHhhHHHHHhhh-hHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122334444555555555544433 344567888888999999999999999999999888774
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.2e-09 Score=97.63 Aligned_cols=161 Identities=11% Similarity=0.075 Sum_probs=124.8
Q ss_pred hHHHHhHHHHHHHcCCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCC
Q 012627 251 NSILFYAPVIFQSLGFGSGA-ALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKP 329 (459)
Q Consensus 251 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (459)
....+..|.+.+++|++..+ .+.+...+..+..+..+++|+++||+|.|+.+..+.+...+...+.++..
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~--------- 113 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT--------- 113 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH---------
Confidence 44555677777889999999 99999999999999999999999999999998888777777766666542
Q ss_pred CCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHH---HHHH
Q 012627 330 LPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFG---IFLV 406 (459)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 406 (459)
....+.+.-++++.+-+..+ ....++...+|++.|+++.|+.+....+|.++++++.+. ....++. ....
T Consensus 114 ----Sl~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~ 186 (511)
T TIGR00806 114 ----SVWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNI 186 (511)
T ss_pred ----HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHH
Confidence 23445566666777766666 335666799999999999999999999999999999999 4445543 3344
Q ss_pred HHHHHHHHHHHHHHhcCCCCC
Q 012627 407 FGGLVVIMSAFIYFFLPETKQ 427 (459)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~ 427 (459)
+......+++++.+++|..++
T Consensus 187 Isl~s~~~a~~~a~~LP~~~~ 207 (511)
T TIGR00806 187 ISLVFMTFSVFLALFLKRPKR 207 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCch
Confidence 556666677777788885443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-09 Score=101.76 Aligned_cols=139 Identities=12% Similarity=-0.073 Sum_probs=107.4
Q ss_pred hHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 012627 251 NSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPL 330 (459)
Q Consensus 251 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (459)
.......|.+.+++|.|..+.++..+...++..++.++.|++.||+|||+.+..+..+..++.+...+..
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~---------- 95 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYP---------- 95 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCc----------
Confidence 4455678888888999999999999999999999999999999999999999999888888888777542
Q ss_pred CchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhh-hHHHH
Q 012627 331 PKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL-KFGIF 404 (459)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 404 (459)
..+..+..-.+.+.+.+..... ...+..+.+| ++|+.++++.......|..+++.+.+.+.++. +|...
T Consensus 96 ---~~~~ll~~r~l~Gig~~~~~~~-~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~ 165 (393)
T PRK09705 96 ---QSALLLSSALLGGVGIGIIQAV-MPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQT 165 (393)
T ss_pred ---chHHHHHHHHHHHhHHHHHhhh-hhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 1233344455555555544433 3445567777 77999999999888899999999988887764 45443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-09 Score=102.57 Aligned_cols=152 Identities=11% Similarity=0.098 Sum_probs=128.7
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccc--hhhhHHHHHHHHHHHHHHh--------hhhHHHHHHHHH
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRR--ASIMVGSVSFFIGAILNAC--------AVHISMLLLGRI 92 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr--~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~r~ 92 (459)
.+.+|++..+...+.-+..+...+|++++|++.||+|.| +++..+++++.+..+...+ .++-+.+.+.-+
T Consensus 309 ~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~ 388 (477)
T PF11700_consen 309 TEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAV 388 (477)
T ss_pred HHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHH
Confidence 445677777789999999999999999999999999999 8999998888666666555 577889999999
Q ss_pred HhhhhhhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhccc
Q 012627 93 FLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL 172 (459)
Q Consensus 93 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l 172 (459)
+.|+..|..++...++.+|..|+++.+..+|++....-....+||.+-+...... .+-|+.+....++.++.+++.+++
T Consensus 389 ~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t-g~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 389 LIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT-GSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred HHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999854444333 247888888888877777777766
Q ss_pred CCC
Q 012627 173 PET 175 (459)
Q Consensus 173 ~e~ 175 (459)
++.
T Consensus 468 ~~~ 470 (477)
T PF11700_consen 468 DVE 470 (477)
T ss_pred cch
Confidence 553
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-09 Score=101.08 Aligned_cols=172 Identities=16% Similarity=0.128 Sum_probs=115.6
Q ss_pred hHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh-----CCcc-eeehhhHHHHHHHHH
Q 012627 242 PAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKF-----GRRA-FFLEAGTEMIIYMVI 315 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~-~~~~~~~~~~~~~~~ 315 (459)
.++.+.........-+|.++++.|++.++.|++...... .+..++.|+++||+ |||| .+..+.....++...
T Consensus 7 l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~ 84 (402)
T PRK11902 7 LGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAA 84 (402)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHH
Confidence 455666677778888999999999999999988665554 58889999999999 7776 455555555444444
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHH
Q 012627 316 VAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAA 395 (459)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (459)
+.+.. +....+.......+.... .....+....++.|..|+++|+++.++......++..+++.+.+.+
T Consensus 85 l~~~~----------~~~~~~~l~~~~~~~~~~-~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l 153 (402)
T PRK11902 85 MAFCP----------PHAALWPLAGLAVLVAFL-SASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWL 153 (402)
T ss_pred HHhcC----------ccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33321 111223233332333333 3334445566678999999999999999988889999999988888
Q ss_pred Hhh-hhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 012627 396 LCH-LKFGIFLVFGGLVVIMSAFIYFFLPETK 426 (459)
Q Consensus 396 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (459)
.+. .++...+.+.++..+...+..+..+|++
T Consensus 154 ~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~ 185 (402)
T PRK11902 154 ADRVLGWGNTYLLMAGLMLAGALTTLWAPEPE 185 (402)
T ss_pred HhcccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 875 3676666555554444444455566553
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-09 Score=106.41 Aligned_cols=156 Identities=10% Similarity=-0.062 Sum_probs=112.7
Q ss_pred HhHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHH
Q 012627 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 320 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
+..+.+..........++.+-++++++..+.|++.+...++..++.++.+++.||.+||+.+..+.++.+++.++.++..
T Consensus 40 ~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alph 119 (633)
T TIGR00805 40 CAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPH 119 (633)
T ss_pred HHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChH
Confidence 34444444444455556666677999999999999999999999999999999999999999999999988888876654
Q ss_pred HHHhcCC---------------------C--------------CCCc--h-hHHHHHHHHHHHHHHHhhcccccceeeec
Q 012627 321 ALEFGEG---------------------K--------------PLPK--G-IGIFLVIVICLFVLAYGRSWGPLGWLVPS 362 (459)
Q Consensus 321 ~~~~~~~---------------------~--------------~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (459)
...-... . .... . ....+++.-++.+.+.+. ..++...++.
T Consensus 120 f~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~-~~~~~~~~i~ 198 (633)
T TIGR00805 120 FLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATP-IFPLGISYID 198 (633)
T ss_pred HhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCc-chhcCchhhh
Confidence 2210000 0 0000 1 122333444455554443 3356677889
Q ss_pred ccCCcccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 012627 363 ELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALC 397 (459)
Q Consensus 363 ~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 397 (459)
|.+|++.|+...|+.+....+|..+++.+.+.+.+
T Consensus 199 d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~ 233 (633)
T TIGR00805 199 DFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQ 233 (633)
T ss_pred ccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 99999999999999999999999999999888764
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-09 Score=101.46 Aligned_cols=139 Identities=12% Similarity=0.035 Sum_probs=114.6
Q ss_pred cccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcchh
Q 012627 26 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 105 (459)
Q Consensus 26 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 105 (459)
.|.++.+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+.+++.+.+++..++.|++.+...+..
T Consensus 235 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 314 (382)
T PRK11128 235 AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAA 314 (382)
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888999999999999999999999999999999999999999988888889999999999999999999988988
Q ss_pred hHHHHhcCCCccchhHHHHHH-HHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH
Q 012627 106 PLYLSEMAPAKIRGAVNQLFQ-LTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG 168 (459)
Q Consensus 106 ~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~ 168 (459)
..++.+. +++++++..+... ...++|..+||.+++... +..|+ ..++..++..++.+++
T Consensus 315 ~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~--~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 315 MRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLY--QHLGA-GVFWVMALVALPALFI 374 (382)
T ss_pred HHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccH-HHHHHHHHHHHHHHHH
Confidence 8888886 5666788888876 666788899999955444 44456 4666666665554443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-09 Score=104.70 Aligned_cols=144 Identities=16% Similarity=0.172 Sum_probs=126.8
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+.+|.++...|++.+++.+|..+|.+..+++.+|+++++++..+.++++++.+..+++++.+..++.-++.|++.....
T Consensus 246 ~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~ 325 (524)
T PF05977_consen 246 RDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIAN 325 (524)
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG 168 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~ 168 (459)
....+.+.+..|++.|||+++++.+....+..+|..+.+ ...+..|-+..+.+.++..++..++
T Consensus 326 ~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G--~la~~~g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 326 SSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWG--FLADHFGVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999844 4444557888888777655554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.4e-09 Score=97.76 Aligned_cols=142 Identities=12% Similarity=0.085 Sum_probs=94.2
Q ss_pred HHHhhcchhHHHHhHHHHHH-HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHH
Q 012627 243 AFQQLTGMNSILFYAPVIFQ-SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLA 321 (459)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 321 (459)
....+..-+......+.+-+ ++|++..+.+++.+...+...++++..|++.||+|.|+.+..+..+..+..+...+...
T Consensus 43 f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~ 122 (462)
T PRK15034 43 LLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQ 122 (462)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333333333333444444 69999999999999999999999999999999999999888777776666655544210
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHH
Q 012627 322 LEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLA 394 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 394 (459)
...++.+..++...+.+.+ +..+.+ ....+++.+|+++||++.|+....+++|..+.+.+.+.
T Consensus 123 --------~~~~s~~~lli~r~l~Gig-g~~f~~-~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 123 --------NPNTPFGIFIVIALLCGFA-GANFAS-SMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred --------ccCCCHHHHHHHHHHHHHH-HHhHHH-HHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 0001223344444444443 334433 35556899999999999999977777777666555544
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.1e-09 Score=102.26 Aligned_cols=168 Identities=14% Similarity=0.094 Sum_probs=108.3
Q ss_pred cchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCC
Q 012627 248 TGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEG 327 (459)
Q Consensus 248 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (459)
...+.+..+.|.+.+++|++..+.+.+..... ......++.|++.||+|+|+++.++.+...++.++.++.....
T Consensus 41 g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~---- 115 (591)
T PTZ00207 41 SFMYAFNLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEV---- 115 (591)
T ss_pred HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccc----
Confidence 33456677788887889999988887766533 3335566789999999999999999888888887776642100
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 012627 328 KPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVF 407 (459)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (459)
. ....+.+.+...+.+.+.+...... ...+.+.+| +.||.+.|+......+|+.+.+.+...+........+++.
T Consensus 116 --i-~~s~~~l~l~r~l~G~G~~~~~~~~-~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l 190 (591)
T PTZ00207 116 --I-EGSVVRLSVYNGLMTLGCMLFDLGA-VVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFL 190 (591)
T ss_pred --c-cCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 0 0123333344444444433333222 333467887 6799999999999999998766666665543223444555
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 012627 408 GGLVVIMSAFIYFFLPET 425 (459)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~ 425 (459)
+.+..+.+++...+++..
T Consensus 191 ~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 191 MSFALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHHHHHhheeCC
Confidence 555555555555555543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.6e-10 Score=107.05 Aligned_cols=135 Identities=20% Similarity=0.113 Sum_probs=110.7
Q ss_pred HHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhH--HHHHHHHHHhhhhhhhhcchhhHHHHhcCCC
Q 012627 38 SSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHI--SMLLLGRIFLGMGIGFGNQAVPLYLSEMAPA 115 (459)
Q Consensus 38 s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~ 115 (459)
....+...++.++.+++.||+|||+++.++.++.+++.++..+.++. +...+.-++.+++.+..++....+..|.+|+
T Consensus 362 ~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 441 (505)
T TIGR00898 362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPT 441 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 34455667788899999999999999999999999988888776544 5555666777777888888889999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCCh
Q 012627 116 KIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETP 176 (459)
Q Consensus 116 ~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p 176 (459)
+.|+.++|+......+|.+++|.+.. . ...++..++++.++..++..+..+++||+.
T Consensus 442 ~~r~~~~g~~~~~~~ig~~i~p~i~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 442 VVRNLGVGVCSTMARVGSIISPFLVY-L---GEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHhhhHhHHHHHHHHHHHHHhHHHH-H---HHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 99999999999999999999999854 2 223577788888888877777777889875
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-09 Score=101.95 Aligned_cols=140 Identities=10% Similarity=0.146 Sum_probs=116.7
Q ss_pred ccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcchhh
Q 012627 27 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 106 (459)
Q Consensus 27 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 106 (459)
+.+..+.|.+.+...+...++.+..|++.||+|||+.+.++.++.++...+...++|.+.+++.+++.|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678999999999999999999999999999999999999999888878889999999999999999877766677
Q ss_pred HHHHhcCCCccchhHHHH-HHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH
Q 012627 107 LYLSEMAPAKIRGAVNQL-FQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG 168 (459)
Q Consensus 107 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~ 168 (459)
.+..+..+++.++...+. .+....+|..+++.+++.. .+..||+..|.+.++..++..++
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l--~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNM--YDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHH--HHhcccHHHHHHHHHHHHHHHHH
Confidence 778888888888877766 6788999999999995444 44458999999988887766544
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.9e-09 Score=100.55 Aligned_cols=162 Identities=9% Similarity=-0.010 Sum_probs=109.6
Q ss_pred HhHHHhhcchhHHHHhHHHHH-HHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH-hCCcceeehhhHHHHHHHHHHHH
Q 012627 241 IPAFQQLTGMNSILFYAPVIF-QSLGFGSGAALYSSVITGIALCIAALISMAFVDK-FGRRAFFLEAGTEMIIYMVIVAI 318 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~ 318 (459)
...++...+++....+++.++ +++|++..+++..............+++|+++|| +|||+.+..+..+..++..++..
T Consensus 28 ~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~ 107 (500)
T PRK09584 28 SIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAW 107 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777888888888 4599998888777766665555556789999999 59999888887777766555543
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCccc--ccccchHHHHHHHHHHHHHHHHHHHHH
Q 012627 319 TLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEM--RSAGQSVVVCNNLLFTALIAQAFLAAL 396 (459)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (459)
.. ...+...+...+.+.+.+... +....+..|.+|++. |..+.++.+...++|..++|.+.+++.
T Consensus 108 ~~------------~~~~~l~~~~~l~gig~g~~~-~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~ 174 (500)
T PRK09584 108 SG------------HDAGIVYMGMATIAVGNGLFK-ANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLA 174 (500)
T ss_pred hc------------ccHHHHHHHHHHHHHhhhccc-CCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 21 111222233333444444333 343456678887643 456788888999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 012627 397 CHLKFGIFLVFGGLVVIMS 415 (459)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~ 415 (459)
++.++...+...++..+++
T Consensus 175 ~~~g~~~~F~i~~i~~~i~ 193 (500)
T PRK09584 175 AKYGWSVAFALSVVGMLIT 193 (500)
T ss_pred HhhCHHHHHHHHHHHHHHH
Confidence 8888776665555433333
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-07 Score=86.61 Aligned_cols=339 Identities=12% Similarity=-0.014 Sum_probs=178.7
Q ss_pred HhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhh--------h----hHHHH---HHHHHHhhhhhhh-hc
Q 012627 39 SLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA--------V----HISML---LLGRIFLGMGIGF-GN 102 (459)
Q Consensus 39 ~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--------~----~~~~l---~~~r~l~G~~~g~-~~ 102 (459)
.-.+...+.++..|.+.||..|.+++..+.+..-++..+.+.. + +-+.. ++.-.+.|.-.-. ..
T Consensus 46 ~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~ 125 (432)
T PF06963_consen 46 VRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASI 125 (432)
T ss_pred HHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 3344556778888999999999999887766554433332211 1 11222 2222222211111 11
Q ss_pred chhhHHHHhcC------CCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hccc---
Q 012627 103 QAVPLYLSEMA------PAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFL--- 172 (459)
Q Consensus 103 ~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l--- 172 (459)
....+.=-||. +++++.+.++...-.--+..+++|++ ........+.+....+.+...++..+. .+++
T Consensus 126 ~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~--vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~V 203 (432)
T PF06963_consen 126 ANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLF--VGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARV 203 (432)
T ss_pred hhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHH--HHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222223443 34556777788887888899999999 444444456777777766666665443 2222
Q ss_pred -CCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchh
Q 012627 173 -PETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMN 251 (459)
Q Consensus 173 -~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (459)
...|+ +..+++.++.++..+.. ...+.+.+........+..+.....|+..++.+.+..-+-..+ .+++ .-
T Consensus 204 Y~~~P~-L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alal-----LY~T-VL 275 (432)
T PF06963_consen 204 YNSVPA-LAVKKRSSESESSSDEE-SSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALAL-----LYFT-VL 275 (432)
T ss_pred HHhChH-hcCCCCCcccccccccc-ccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHH-----HHHH-Hh
Confidence 22232 22222111111000000 0000011111111111222333556777776665443332222 1111 11
Q ss_pred HHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 012627 252 SILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLP 331 (459)
Q Consensus 252 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (459)
.+...+..|+...|+++...|.+-....+.++.+.++..++.+|+|..|.=.++......++.+...... ...++.+
T Consensus 276 sf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~---~~~~~~~ 352 (432)
T PF06963_consen 276 SFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFW---APGSPFS 352 (432)
T ss_pred cCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHh---cCCCCch
Confidence 1233445666777999999999999999999999999999999999887666665555444444333221 1111111
Q ss_pred chhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHH
Q 012627 332 KGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQA 391 (459)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~ 391 (459)
......++....+.-.+.-..- ....-+.+|..|+++||...|+-+...++...+.-.+
T Consensus 353 ~~s~~~l~~gi~~SR~GLW~fD-L~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 353 SISAYLLLGGIALSRIGLWSFD-LAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred hhHHHHHHHHHHHHHHHHHhhh-HHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 2223333333333333322221 2223445899999999999999988888866554444
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-10 Score=102.76 Aligned_cols=177 Identities=10% Similarity=0.026 Sum_probs=130.8
Q ss_pred HhHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHH
Q 012627 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 320 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
+....+..-.+.+....+..-+.+|.++...|++.....+..++.+++.|++.||+.|++++..+..+-.++.+...+..
T Consensus 40 ~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~ 119 (493)
T KOG1330|consen 40 LVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN 119 (493)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH
Confidence 45555555555555555555455899999999999999999999999999999999999999999988888887777653
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012627 321 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 400 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (459)
. .|..++.-.+.+.+-+ .+.|+...+++|.+|.++|+++.++.+.....|.+++-.....+.+..+
T Consensus 120 ~-------------Fwq~~l~R~~vGiGeA-s~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~ 185 (493)
T KOG1330|consen 120 H-------------FWQVLLCRGFVGIGEA-SYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF 185 (493)
T ss_pred H-------------HHHHHHHHHHhccchh-hhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence 2 3555555555555543 5667778888999999999999999999999988887777666655544
Q ss_pred -HHHH-HHHHHHHHHHHHHHHHhcCCCCCCCHH
Q 012627 401 -FGIF-LVFGGLVVIMSAFIYFFLPETKQVPIE 431 (459)
Q Consensus 401 -~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (459)
|.+. ...+++..+++++..++.+|++++..+
T Consensus 186 ~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~ 218 (493)
T KOG1330|consen 186 WWRWAFRGSAVLGVIVGLLVFLFVREPERGARD 218 (493)
T ss_pred ceEEEEEeehHHHHHHHHHHHhhccCccccccc
Confidence 4433 334445555556666777777655433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.1e-09 Score=95.04 Aligned_cols=151 Identities=15% Similarity=0.138 Sum_probs=129.6
Q ss_pred cccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcc
Q 012627 24 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQ 103 (459)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 103 (459)
.++|++..++.++.....+..++|++++|+|.||+|.|+++.++++++.+.++..-+...-..+.++-.+.|.+.|+.+.
T Consensus 281 ~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA 360 (438)
T COG2270 281 ADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQA 360 (438)
T ss_pred HHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHH
Confidence 36777888889999999999999999999999999999999999999999999888887777788888999999999999
Q ss_pred hhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCC
Q 012627 104 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPET 175 (459)
Q Consensus 104 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~ 175 (459)
.+.++.++..|+++-++.+|++....-.+..+||.+-........ +-|.-+....++..+.+++.+.+|+.
T Consensus 361 ~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg-~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 361 SSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG-SSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc-chhhHHHHHHHHHHhhHhhEEeecCC
Confidence 999999999999999999999999999999999998444443332 46777777666666666666667654
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-08 Score=93.83 Aligned_cols=148 Identities=10% Similarity=0.004 Sum_probs=110.2
Q ss_pred hhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhc
Q 012627 246 QLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFG 325 (459)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (459)
...+.....+++=-.+++.+-.+..-|......-++.++.-++.+++.+|+|+-+++..+..+..+-++.+...
T Consensus 383 mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L------ 456 (618)
T KOG3762|consen 383 MGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL------ 456 (618)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh------
Confidence 33344445555555568888777777877788888889999999999999999999988877666666555443
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHH-HHHHHHHHHHHHHHHHhhhhHHHH
Q 012627 326 EGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCN-NLLFTALIAQAFLAALCHLKFGIF 404 (459)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 404 (459)
.++|..+.+-.+-+...+..|..+ ..|++...|++.+.++.++.... ..+|-.+|+.+.|...+..+....
T Consensus 457 -------~n~W~vLPieilqgit~aliWaa~-~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~tt 528 (618)
T KOG3762|consen 457 -------QNPWMVLPIEILQGITHALIWAAI-ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTT 528 (618)
T ss_pred -------cCchheeeHHHHHHHHHHHHHHHH-HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHH
Confidence 345777777777788888777666 56668999999999999987544 466788888888888887775444
Q ss_pred HHH
Q 012627 405 LVF 407 (459)
Q Consensus 405 ~~~ 407 (459)
+..
T Consensus 529 f~~ 531 (618)
T KOG3762|consen 529 FRI 531 (618)
T ss_pred HHH
Confidence 433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.8e-09 Score=92.84 Aligned_cols=159 Identities=15% Similarity=0.122 Sum_probs=111.8
Q ss_pred HHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 012627 253 ILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPK 332 (459)
Q Consensus 253 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (459)
.....+.+-+++++|+.|.+++.++..+.+.+.++..|.+.||+|.|+....+.++..+-.+...+... +
T Consensus 33 ~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~----------~ 102 (417)
T COG2223 33 FSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVT----------Y 102 (417)
T ss_pred HHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHcc----------C
Confidence 333344444679999999999999999999999999999999999999988887777776666665531 1
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHH-HHH
Q 012627 333 GIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK---FGIFL-VFG 408 (459)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~ 408 (459)
+..+..++...+.+.+. ..+ .+...++++.+|++++|.++|++. .+++|..+...+.+.+....+ +.... ++.
T Consensus 103 ~~~~~ll~~gll~G~~G-asF-av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~ 179 (417)
T COG2223 103 PSTWQLLVIGLLLGLAG-ASF-AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYV 179 (417)
T ss_pred CchHHHHHHHHHHhccc-cee-hcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 11133444444433332 233 344566789999999999999998 999999999999888887776 44433 344
Q ss_pred HHHHHHHHHHHHhcCC
Q 012627 409 GLVVIMSAFIYFFLPE 424 (459)
Q Consensus 409 ~~~~~~~~~~~~~~~~ 424 (459)
..+.+..+..++..++
T Consensus 180 ~~l~v~~v~~~~~~~d 195 (417)
T COG2223 180 VALAIAAVLAWLGMND 195 (417)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 4444444445555543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.7e-09 Score=99.90 Aligned_cols=147 Identities=13% Similarity=-0.023 Sum_probs=92.6
Q ss_pred cccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHH--h--hhhHHHHHHHHHHhhhhhhhh
Q 012627 26 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA--C--AVHISMLLLGRIFLGMGIGFG 101 (459)
Q Consensus 26 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~--~--~~~~~~l~~~r~l~G~~~g~~ 101 (459)
+|.+..+.++..+...++..+++++.|+++||+|||+++.++.++.++...... . .++.+..+..-.+.+.+.+..
T Consensus 274 ~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (432)
T PRK10406 274 AGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFY 353 (432)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 456677778989988888899999999999999999988776665443332211 1 223332222223233334444
Q ss_pred cchhhHHHHhcCCCccchhHHHHHHHHHHH-HHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCC
Q 012627 102 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCL-GILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPE 174 (459)
Q Consensus 102 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e 174 (459)
.+....++.|++|++.|+.+.|+.+...++ .....|.+..... ....|...++..++..++..+..+++++
T Consensus 354 ~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~--~~g~~~~~~~~~~~~~~i~~~~~~~l~~ 425 (432)
T PRK10406 354 TSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK--SIGMETAFFWYVTLMAVVAFLVSLMLHR 425 (432)
T ss_pred HHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 455667889999999999999998765443 2334666543221 1223666666666666665555455544
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.5e-09 Score=89.08 Aligned_cols=150 Identities=19% Similarity=0.138 Sum_probs=116.0
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHhh
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA-------VHISMLLLGRIFLG 95 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~r~l~G 95 (459)
.+.+|.|.+|...+.+...+|..+| ++.|.+.|++|+|.++.+|.+...++..+..++ .++|.+.+..++.|
T Consensus 29 k~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~ 107 (250)
T PF06813_consen 29 KSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGG 107 (250)
T ss_pred HHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHc
Confidence 4556777788899999999999874 888999999999999999999999998877654 46788988899999
Q ss_pred hhhhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCC
Q 012627 96 MGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPET 175 (459)
Q Consensus 96 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~ 175 (459)
.+.+....++.....+.||. +||.+.|+.-...+++..+-..+.......+ .-+..++....+.++.++..+++++.
T Consensus 108 ~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~~--~~~fll~la~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 108 NSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGDD--PSSFLLFLAVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred ccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHHHhhheecc
Confidence 98887777777777788975 6999999999999999988887744443332 24445555555555555555565544
Q ss_pred h
Q 012627 176 P 176 (459)
Q Consensus 176 p 176 (459)
|
T Consensus 185 ~ 185 (250)
T PF06813_consen 185 P 185 (250)
T ss_pred C
Confidence 4
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.4e-09 Score=99.89 Aligned_cols=115 Identities=18% Similarity=0.257 Sum_probs=98.0
Q ss_pred CchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhh-hhHHHHHHHHHHhhhhhhhhcchhhH
Q 012627 29 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA-VHISMLLLGRIFLGMGIGFGNQAVPL 107 (459)
Q Consensus 29 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~ 107 (459)
++.+.+++.+...++..++.+++++++||+|+|+++..+.++.+++.++..+. ++.+.+.+..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566788888899999999999999999999999999998888888777665 46677788889999999999999999
Q ss_pred HHHhcCC-------CccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 012627 108 YLSEMAP-------AKIRGAVNQLFQLTTCLGILVANLINYGT 143 (459)
Q Consensus 108 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~lg~~~~~~~ 143 (459)
+++|..+ ++++|.+.++.+....+|..+++.+.+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865 45679999999999999999998885444
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.2e-08 Score=95.14 Aligned_cols=145 Identities=8% Similarity=-0.109 Sum_probs=104.1
Q ss_pred HhHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHH
Q 012627 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 320 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
+.++.............|.+.+++|.++.+.++......++..++.++.|++.||+|||+.+..+..+..++.++.....
T Consensus 33 ~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~ 112 (438)
T PRK10133 33 SLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA 112 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444556677788888777999999999999999999999999999999999999999988888777776543211
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHH
Q 012627 321 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAAL 396 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (459)
. .+..+..++...+.+.+.+...... ..++.|..|++.|...+++.+....+|..+++.+.+.+.
T Consensus 113 ~----------a~~~~~ll~~r~l~G~g~g~~~~~~-~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 113 E----------IMNYTLFLVGLFIIAAGLGCLETAA-NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred h----------cCCHHHHHHHHHHHHHHHHHHHhhH-HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0122344455555556555554443 334457766666666788888888899888888766543
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.7e-09 Score=97.12 Aligned_cols=141 Identities=18% Similarity=0.080 Sum_probs=106.7
Q ss_pred cccCchhHHHHHHHhHH-HHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHh------hhhHHHHHHHHHHhhhhh
Q 012627 26 CKYDNQVLTLFTSSLYF-AGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC------AVHISMLLLGRIFLGMGI 98 (459)
Q Consensus 26 ~~~s~~~~~~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~r~l~G~~~ 98 (459)
.|.+++++|++...... ...++.++.|++.||+|+|+.+..+.++.++..+.... .++.+.+.....+.+++.
T Consensus 238 ~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (390)
T TIGR02718 238 AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLIT 317 (390)
T ss_pred cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHH
Confidence 47788888999888764 66678899999999999999998877766443333221 133344455566667777
Q ss_pred hhhcchhhHHHHhcCCC-ccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH
Q 012627 99 GFGNQAVPLYLSEMAPA-KIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG 168 (459)
Q Consensus 99 g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~ 168 (459)
+...+...+.+.+..++ +++++.+++.+...++|..+||.+++... +..||+..|++.++..++..+.
T Consensus 318 g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~--~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 318 GITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLT--DRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHccHHHHHHHHHHHHHHHHH
Confidence 87878888888788776 78999999999999999999999965444 4457999999888777665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.5e-09 Score=112.22 Aligned_cols=139 Identities=12% Similarity=0.062 Sum_probs=117.2
Q ss_pred ccccCch-hHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcc
Q 012627 25 YCKYDNQ-VLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQ 103 (459)
Q Consensus 25 ~~~~s~~-~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 103 (459)
.+|.+.. +.+++.+...++..++.+++|+++||+++|+++.++.++.+++.++..+.++.+.++++.++.|++.+...+
T Consensus 262 ~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 341 (1146)
T PRK08633 262 VLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIV 341 (1146)
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Confidence 3566677 889999999999999999999999999999999999999999988888888999999999999999999999
Q ss_pred hhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHH
Q 012627 104 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATL 164 (459)
Q Consensus 104 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~ 164 (459)
...+++.+..|+++||+++++.+....+|.++++.++..... ...++...|++.+.+.++
T Consensus 342 ~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~ 401 (1146)
T PRK08633 342 PLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG-LGLSPAGLFYLIALVTLI 401 (1146)
T ss_pred HHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888777544332 223566666665554433
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-08 Score=94.59 Aligned_cols=161 Identities=14% Similarity=0.150 Sum_probs=103.2
Q ss_pred HHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh-----CCcceee-hhhHHHHHHHHHHHHHHHHHhc
Q 012627 252 SILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKF-----GRRAFFL-EAGTEMIIYMVIVAITLALEFG 325 (459)
Q Consensus 252 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 325 (459)
......|.+.++.|+|..+.++.... .+...+ .++.|+++||+ ||||.++ .+.....+....+.+..
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~----- 78 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV----- 78 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC-----
Confidence 35556788899999999999888644 444444 88999999998 7888654 33333333333332210
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh-----
Q 012627 326 EGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK----- 400 (459)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----- 400 (459)
+....+.......+...+.. ...+....++.|.+|+++|+.+.++......+|..+++.+.+.+.+..+
T Consensus 79 -----~~~~l~~l~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~ 152 (356)
T TIGR00901 79 -----PSTDLPLLAGLAFLIAFFSA-TQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGL 152 (356)
T ss_pred -----cchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 11112222222222332222 2234445566899999999999999999999999999999988887776
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHh-cCCC
Q 012627 401 ---FGIFLVFGGLVVIMSAFIYFF-LPET 425 (459)
Q Consensus 401 ---~~~~~~~~~~~~~~~~~~~~~-~~~~ 425 (459)
|...+.+.+++.+...+..++ .+|+
T Consensus 153 ~~~wr~~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 153 ITLWGYIFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 776666666665555554443 4554
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-08 Score=95.76 Aligned_cols=119 Identities=18% Similarity=0.078 Sum_probs=85.2
Q ss_pred cccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHH-H---HhhhhHHHHHHHHHHhhhhhhhh
Q 012627 26 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAIL-N---ACAVHISMLLLGRIFLGMGIGFG 101 (459)
Q Consensus 26 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~-~---~~~~~~~~l~~~r~l~G~~~g~~ 101 (459)
.|.+..+.++....+.++..++.+++|+++||+|||+++..+.++..+..+. . ...+++..+.+..++.|++.+..
T Consensus 269 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 348 (434)
T PRK15075 269 LHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSY 348 (434)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 4556667788888999999999999999999999999888765544332221 1 12234444555566667777777
Q ss_pred cchhhHHHHhcCCCccchhHHHHHHH-HHHHHHHHHHHHHhccc
Q 012627 102 NQAVPLYLSEMAPAKIRGAVNQLFQL-TTCLGILVANLINYGTE 144 (459)
Q Consensus 102 ~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~lg~~~~~~~~ 144 (459)
.+....++.|.+|+++|+...++... +..++..++|.+.....
T Consensus 349 ~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~ 392 (434)
T PRK15075 349 NGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLI 392 (434)
T ss_pred HhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHH
Confidence 77777889999999999999998544 44445667887744333
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-07 Score=91.22 Aligned_cols=144 Identities=15% Similarity=0.248 Sum_probs=113.6
Q ss_pred cccCchhHHHHHHHhHHHHHHHHHHhhhhhccc-ccchhhhHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHhhh
Q 012627 26 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-GRRASIMVGSVSFFIGAILNACAV--------HISMLLLGRIFLGM 96 (459)
Q Consensus 26 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~r~l~G~ 96 (459)
+|.+......+...+....-+..+++|.++|++ ||++.+.++.++..++.++.+++. .....+++-.+..+
T Consensus 18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~ 97 (654)
T TIGR00926 18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL 97 (654)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh
Confidence 455666668888888888888999999999965 999999999999999998887642 12346677888899
Q ss_pred hhhhhcchhhHHHHhcCCCc---cchhHHHHHHHHHHHHHHHHHHHHhccc-cc----cCchhhHHHHhhHHHHHHHHHH
Q 012627 97 GIGFGNQAVPLYLSEMAPAK---IRGAVNQLFQLTTCLGILVANLINYGTE-KI----HPWGWRLSLGLATVPATLMFVG 168 (459)
Q Consensus 97 ~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~G~~lg~~~~~~~~-~~----~~~gwr~~f~~~~~~~~~~~~~ 168 (459)
|.|+.-|...+...|.++++ +|-..+.++..+.++|..+++++..... .. ...+|...|.+.++..++.+++
T Consensus 98 G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 98 GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999764 3677888999999999999987743332 11 1246999999998888776554
Q ss_pred h
Q 012627 169 G 169 (459)
Q Consensus 169 ~ 169 (459)
.
T Consensus 178 f 178 (654)
T TIGR00926 178 F 178 (654)
T ss_pred H
Confidence 3
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.7e-09 Score=89.40 Aligned_cols=333 Identities=11% Similarity=0.077 Sum_probs=204.3
Q ss_pred HHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcchhhHHHHhcCCC
Q 012627 36 FTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPA 115 (459)
Q Consensus 36 ~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~ 115 (459)
+.-...-.+.+.-.|.=.+.|-.-.|++++.-.+.......+.-+.++.+.+-+.-++.|...+ ...+-++++-+..+|
T Consensus 47 vyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~ 125 (433)
T KOG3810|consen 47 VYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDP 125 (433)
T ss_pred cccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCH
Confidence 3444555667777788889999999999999888888888888999999999999999999877 457788899999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCChhhHHhcCCHHHHHHHHHHH
Q 012627 116 KIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKV 195 (459)
Q Consensus 116 ~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~ 195 (459)
+++.++.+...++.-.|...|..++......+..++...-.+......+.....+++|..+|.+..+.+.++. ...+.
T Consensus 126 ~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~--~v~~~ 203 (433)
T KOG3810|consen 126 EMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKI--SVGDL 203 (433)
T ss_pred HHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccc--eeccc
Confidence 9999999999999999999999988777777766777777777666666677778888777655443333211 11111
Q ss_pred cCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHHHHcCCC--CCchhH
Q 012627 196 RGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFG--SGAALY 273 (459)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~ 273 (459)
+..+. +.+..+.. ..........+.+..+++.....- +.+.....+++-..+|...+-++..-. ....|.
T Consensus 204 e~~~~-~~~~~~~l--~~~~~~l~~~l~~~y~np~ll~WS-----lWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~ 275 (433)
T KOG3810|consen 204 EEMNP-QASYMSYL--RGAFVLLWRDLQECYSNPRLLKWS-----LWWALASCGYYQVTNYTQILWKEVAPNPANVYNGA 275 (433)
T ss_pred hhcCc-cchhhHHH--HHHHHHHHHHHHHHhcCchhhhhH-----HHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCH
Confidence 11111 00000000 011111122334444444433322 345556667777777776666664311 112345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcc
Q 012627 274 SSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSW 353 (459)
Q Consensus 274 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (459)
.-++..+.++++.+..|.+.-++.|..-+..+...... .+...... .....|...+...++...+....
T Consensus 276 veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~----agllf~m~-------~t~~Iw~~Ya~yvlfr~~y~l~i 344 (433)
T KOG3810|consen 276 VEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQ----AGLLFIMA-------QTQHIWVCYAGYVLFRVIYQLTI 344 (433)
T ss_pred HHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHh----hhhhhhhh-------cccceehhhhhHHHHHhhHhhhh
Confidence 55666677777788888776665555333322221111 11111110 11335666666666666666554
Q ss_pred cccceeeecccCCcccccccchHHHHHHHHHHHHHHHH
Q 012627 354 GPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQA 391 (459)
Q Consensus 354 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~ 391 (459)
+.....+ ++....+.-|...|++....-+...+...+
T Consensus 345 tiA~~~i-A~nL~~e~~gLvFGiNTFvAl~lQsilT~i 381 (433)
T KOG3810|consen 345 TIATFQI-ARNLSSELFGLVFGINTFVALILQSILTLI 381 (433)
T ss_pred hHHHHHH-HHhhhhhhheeeeehHHHHHHHHHHhheEE
Confidence 3332333 344556667888888877666555554443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-08 Score=94.26 Aligned_cols=133 Identities=15% Similarity=0.028 Sum_probs=95.0
Q ss_pred hHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 012627 251 NSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPL 330 (459)
Q Consensus 251 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (459)
......+|.+.+++|++..+.++......++..++.++.|++.||+|||+.+..+.....++.+.. ..
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~----------- 84 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA----------- 84 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh-----------
Confidence 334556788889999999999999999999999999999999999999998877665554444332 11
Q ss_pred CchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 012627 331 PKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL 399 (459)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 399 (459)
...+..++...+.+.+.+...... .....|.+| ++|+++.++.+....++..+++.+.+.+.+..
T Consensus 85 --~~~~~l~~~~~~~g~g~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~ 149 (355)
T TIGR00896 85 --PGTALLFAGTALIGVGIAIINVLL-PSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHS 149 (355)
T ss_pred --ccHHHHHHHHHHHHHHHHHHhccc-hHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 112233333334444433332222 334467776 57899999999999999999999888887654
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.1e-09 Score=96.85 Aligned_cols=149 Identities=15% Similarity=0.132 Sum_probs=117.5
Q ss_pred HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 012627 263 SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVI 342 (459)
Q Consensus 263 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (459)
+++++..+-+++......+.+++.+.++++.||+|-|+++..+.++..++.++....... ..+.+++.-
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~-----------~~~~~~~~R 135 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI-----------GFYLLLVLR 135 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh-----------cchhhHHHH
Confidence 367888889999999999999999999999999999999999888888888887776532 123456677
Q ss_pred HHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHH-HHHHHHHHHHHHHH
Q 012627 343 CLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCH-LKFGIFLV-FGGLVVIMSAFIYF 420 (459)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~ 420 (459)
.+.+++.+..++.+ ..+...-.|+++|++..++.....++|..+.-++.|.+.+. .||...+. .+++..+..++.++
T Consensus 136 ~lqGl~~g~~~pa~-~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~ 214 (466)
T KOG2532|consen 136 FLQGLGQGVLFPAI-GSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFL 214 (466)
T ss_pred HHhHHHHhHHHhhh-hceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 77777877777655 45557999999999999999999999999999999999988 77665444 44444444444444
Q ss_pred hcC
Q 012627 421 FLP 423 (459)
Q Consensus 421 ~~~ 423 (459)
+..
T Consensus 215 ~~~ 217 (466)
T KOG2532|consen 215 FYS 217 (466)
T ss_pred Hhc
Confidence 443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.9e-09 Score=82.21 Aligned_cols=134 Identities=16% Similarity=0.168 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccc
Q 012627 276 VITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGP 355 (459)
Q Consensus 276 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (459)
....++..++.++.+++.||++||+.+..+.....++.+..... ...+.......+.+.+.+... +
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~-~ 70 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-------------SNITVLIIARFLQGFGAAFAL-V 70 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHHHHHHH-H
Confidence 34567788899999999999999998876666555555444322 112333333444444444333 3
Q ss_pred cceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHhcC
Q 012627 356 LGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLV-VIMSAFIYFFLP 423 (459)
Q Consensus 356 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 423 (459)
....+..|.+|++.|+++.++.+....++..+++.+.+.+.+..++...+...... .+..+..+...+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 71 AGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred hHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 44556689999999999999999999999999999999998877765444443333 333333333333
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.6e-08 Score=105.69 Aligned_cols=145 Identities=12% Similarity=0.120 Sum_probs=98.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHH
Q 012627 270 AALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAY 349 (459)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (459)
..++......+..++.++++|+++||++||+++........+........... ...+.+++..++.+.+.
T Consensus 53 ~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~----------~s~~~l~~~~~l~gi~~ 122 (1140)
T PRK06814 53 LVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL----------NSVPLLFAALFLMGIHS 122 (1140)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHHH
Confidence 45666777888889999999999999999997543222222222211111100 12344444555555554
Q ss_pred hhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 012627 350 GRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPET 425 (459)
Q Consensus 350 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (459)
+ .+.|....++.+.+|++.++.++|+.+....++..+++.+.+.+.+..++...++..+++.+.++++.+.++++
T Consensus 123 a-~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1140)
T PRK06814 123 A-LFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKT 197 (1140)
T ss_pred H-hhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 4 34456677778999999999999999999999999999999999988887766655555555555555666554
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.3e-08 Score=89.97 Aligned_cols=147 Identities=14% Similarity=0.181 Sum_probs=110.0
Q ss_pred ccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhh---hHH------HHHHHHHHhhhh
Q 012627 27 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV---HIS------MLLLGRIFLGMG 97 (459)
Q Consensus 27 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~---~~~------~l~~~r~l~G~~ 97 (459)
|++..+..+..........++.+++..+.||+|||+.++.+..+..+..+++.... +.. ..+++.++..++
T Consensus 301 G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~ 380 (485)
T KOG0569|consen 301 GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIIS 380 (485)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 56677778999999999999999999999999999999999999999888776541 111 123344444333
Q ss_pred hhh-hcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hcccCCC
Q 012627 98 IGF-GNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPET 175 (459)
Q Consensus 98 ~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~ 175 (459)
.+. .-|...-+.+|.+|++.|..++++......++..+-... .....+..|- ..|+...+++++..+. ++++|||
T Consensus 381 f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~--fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPET 457 (485)
T KOG0569|consen 381 FAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFA--FPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPET 457 (485)
T ss_pred hhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCccc
Confidence 332 357778889999999999999999999888888777666 3333333343 6777777777776554 5669998
Q ss_pred h
Q 012627 176 P 176 (459)
Q Consensus 176 p 176 (459)
.
T Consensus 458 k 458 (485)
T KOG0569|consen 458 K 458 (485)
T ss_pred C
Confidence 5
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-08 Score=96.21 Aligned_cols=148 Identities=14% Similarity=0.083 Sum_probs=130.4
Q ss_pred ccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccc--cchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 25 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRG--RRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 25 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
..+.+..+...+.++..+...++.+..|+++|+.. ++.+..+++++.+++...++++++++.++..-.+.|++.|...
T Consensus 327 ~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~ 406 (509)
T KOG2504|consen 327 SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFS 406 (509)
T ss_pred hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 56677888899999999999999999999999988 5566778889999999999999999999999999999999998
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccC
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLP 173 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~ 173 (459)
......+.|..+.++-..+.|+.....+++.++||++++...+.. .+|...|+..++..++....++..|
T Consensus 407 ~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t-g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 407 SLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT-GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc-CCeeeehhhcChHHHHHHHHHHHhH
Confidence 888889999999999999999999999999999999965433332 2499999999999888877776665
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.2e-08 Score=89.02 Aligned_cols=135 Identities=27% Similarity=0.417 Sum_probs=111.5
Q ss_pred hhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhh--HHHHHHHHHHhhhhhhhhcchhhHH
Q 012627 31 QVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVH--ISMLLLGRIFLGMGIGFGNQAVPLY 108 (459)
Q Consensus 31 ~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~g~~~~~~~~~ 108 (459)
...++..+.+.++..++.++.|.++||+|||+.+..+.....++.+++++..+ .+.+++.|+.+|++.+...+...++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 118 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL 118 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 46799999999999999999999999999998888888776666777777766 9999999999999999999999999
Q ss_pred HHhcCCC-ccchhHHHHHHH-HHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHH
Q 012627 109 LSEMAPA-KIRGAVNQLFQL-TTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLM 165 (459)
Q Consensus 109 i~~~~~~-~~r~~~~~~~~~-~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~ 165 (459)
+.|+.|+ ++|+...+.... ...+|..+++.++.........+||..|..........
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (338)
T COG0477 119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLL 177 (338)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 9999998 679999999888 58888888886654333324457999776666555443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.8e-08 Score=87.41 Aligned_cols=116 Identities=13% Similarity=0.006 Sum_probs=87.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHH
Q 012627 267 GSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFV 346 (459)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (459)
+...+|++-..+++...+.++..|.++||+|||.++.++.....+..++.+... ....++..=+.+
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~--------------~F~afv~aR~l~ 131 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR--------------NFAAFVLARFLG 131 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhh
Confidence 445678888899999999999999999999999998887777777666555432 111222212222
Q ss_pred HHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 012627 347 LAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALC 397 (459)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 397 (459)
..+. +.-.+..++++|+++++.|+.+++.......+|..+||.+.+++..
T Consensus 132 Gi~k-gnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 132 GIFK-GNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred hhcc-CchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 2222 2334557788999999999999999999999999999999999876
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-08 Score=91.99 Aligned_cols=145 Identities=13% Similarity=0.161 Sum_probs=122.6
Q ss_pred CchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcchhhHH
Q 012627 29 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLY 108 (459)
Q Consensus 29 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 108 (459)
++...|.+.+...+..++...+..++.+|+|.|+.++++.++..+=.+++++++|.+.+.+.+.+.|+-.+........|
T Consensus 257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkY 336 (412)
T PF01306_consen 257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKY 336 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccchhHHHH-HHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHh-cccCCC
Q 012627 109 LSEMAPAKIRGAVNQL-FQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPET 175 (459)
Q Consensus 109 i~~~~~~~~r~~~~~~-~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~l~e~ 175 (459)
+++.+|+|-.++...+ .+.+.++|..+.+.+ .+...+..|.+..|++.+.+.++..++. +.+++.
T Consensus 337 I~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~--~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 337 ITAHFDKRLSATLYLVGFQFAKQIGIIILSPL--AGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhh--HHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 9999999887777777 478889999999988 5555666789999999988877765554 446544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.2e-08 Score=81.98 Aligned_cols=174 Identities=13% Similarity=0.119 Sum_probs=115.9
Q ss_pred HHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHH
Q 012627 243 AFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLAL 322 (459)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (459)
........+.+..|.|.+-+++|+|..+...+.....++..+| +..|.+.|++|.+..+.++.....++...+......
T Consensus 11 v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~ 89 (250)
T PF06813_consen 11 VQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSG 89 (250)
T ss_pred HHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344556677888999998889999999988888888888765 888999999999998888888888887776665422
Q ss_pred HhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 012627 323 EFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFG 402 (459)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (459)
. .+....|...+..++.+.+... +.........+.+|. .||++.|+.-....+++.+-..+...+.+.....
T Consensus 90 ~------i~~~~~~~~~~~~~l~~~s~~~-~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~ 161 (250)
T PF06813_consen 90 R------IPSLPVWLMCLFLFLGGNSSCW-FNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSS 161 (250)
T ss_pred c------cCccchHHHHHHHHHHcccHHH-hhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCCChHH
Confidence 1 1111223333333332222221 112212223478885 6999999999999999999988888887664344
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Q 012627 403 IFLVFGGLVVIMSAFIYFFLPET 425 (459)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~ 425 (459)
.....+....+++++...+++..
T Consensus 162 fll~la~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 162 FLLFLAVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred HHHHHHHHHHHHHHHHhhheecc
Confidence 44444555555555555555543
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.7e-08 Score=88.11 Aligned_cols=131 Identities=11% Similarity=0.019 Sum_probs=102.2
Q ss_pred ccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcch
Q 012627 25 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQA 104 (459)
Q Consensus 25 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 104 (459)
.+|.++.+.++..+.+..+..++.+..+++.||+|+|+++.++..+..++.++....++... ...-++.|++.+..+|.
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~ 250 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPT 250 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999999999999999999998888888887766665554433 34556889999999999
Q ss_pred hhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHH
Q 012627 105 VPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATV 160 (459)
Q Consensus 105 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~ 160 (459)
..+...+..|++ .+++.++. ....+|.+++|.+- ....+..|.+..|++..+
T Consensus 251 ~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~--G~lad~~g~~~a~~v~~~ 302 (310)
T TIGR01272 251 IFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQ--GSLADCLGIQLAFALPVP 302 (310)
T ss_pred HHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHH--HHHHHhccchHHHHHHHH
Confidence 999999988764 55666775 55668999999873 333334467888774443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.8e-08 Score=92.48 Aligned_cols=119 Identities=13% Similarity=0.110 Sum_probs=96.4
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhh--hHHHHHHHHHHhhhhhhh
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV--HISMLLLGRIFLGMGIGF 100 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~ 100 (459)
++.+|.++...++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+ +++.+.+..++.|+|.+.
T Consensus 256 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~ 335 (448)
T PRK09848 256 RYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGV 335 (448)
T ss_pred eeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 334555555555555555677888999999999999999999999999888887776643 677777888899999999
Q ss_pred hcchhhHHHHhcCCCc-------cchhHHHHHHHHHHHHHHHHHHHHh
Q 012627 101 GNQAVPLYLSEMAPAK-------IRGAVNQLFQLTTCLGILVANLINY 141 (459)
Q Consensus 101 ~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~lg~~~~~ 141 (459)
..+...++.+|..+.+ ++|...++.+....+|..+|+.+..
T Consensus 336 ~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g 383 (448)
T PRK09848 336 TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPA 383 (448)
T ss_pred HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888754 3599999999999999999887743
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-07 Score=89.39 Aligned_cols=146 Identities=17% Similarity=0.137 Sum_probs=94.2
Q ss_pred chhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHH----HhCCcceeehh-hHHHHHHHHHHHHHHHHH
Q 012627 249 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVD----KFGRRAFFLEA-GTEMIIYMVIVAITLALE 323 (459)
Q Consensus 249 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~ 323 (459)
++.....+.+.|++++|.+....+.......+.+++..++.|+++| |+|||+.++.. .....+++.++.......
T Consensus 19 ~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~ 98 (477)
T TIGR01301 19 GWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIG 98 (477)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhh
Confidence 3455566677788889999999999999999999999999999999 59999988764 333333333333221110
Q ss_pred --hcCC-CCCCchh-HHHHHHHHHHHHHHHhhcccccceeeecccCCcccc--cccchHHHHHHHHHHHHHHHHHHHH
Q 012627 324 --FGEG-KPLPKGI-GIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMR--SAGQSVVVCNNLLFTALIAQAFLAA 395 (459)
Q Consensus 324 --~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (459)
.... +...... .+..++...+..++.+....|. .+++.|.+|+++| +.+.++.+....+|+.+++.+.+..
T Consensus 99 ~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~ 175 (477)
T TIGR01301 99 HLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYS 175 (477)
T ss_pred hhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0000011 1222333333444545444454 5567899998865 5788888888889888888877654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.6e-07 Score=85.30 Aligned_cols=135 Identities=16% Similarity=0.144 Sum_probs=99.6
Q ss_pred HHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcchhhHHHHhcC
Q 012627 34 TLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMA 113 (459)
Q Consensus 34 ~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 113 (459)
+.+.-+..+...+.-+.+.+..+|+..+.=+..+.+++.++.++.++++|.+.=+++-++.+++.|........+.. .+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 44555555666777777888899988766677777889999999999999999999999999999999888888754 55
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcc-cCC
Q 012627 114 PAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF-LPE 174 (459)
Q Consensus 114 ~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-l~e 174 (459)
++ ...+-+..+.+.+.++|+..-.+... ...+-|..+++...+.++..+..++ +|.
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 43 35788888999999999877433333 3344577777777666555544444 543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.4e-08 Score=80.12 Aligned_cols=311 Identities=13% Similarity=0.142 Sum_probs=163.4
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
-+.++....++|.+.-+.+-...+...+.|.++|+-|||+.-+.-++.+.++++ .-.+++|-.++++|.+.|+..+..+
T Consensus 64 YstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLF 142 (454)
T KOG4332|consen 64 YSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLF 142 (454)
T ss_pred ehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHH
Confidence 345678888889988888888899999999999999999976665555555443 3467899999999999999999888
Q ss_pred chhhHH-HHhcCCCccchhHHHHHHHHH--------HHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccC
Q 012627 103 QAVPLY-LSEMAPAKIRGAVNQLFQLTT--------CLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLP 173 (459)
Q Consensus 103 ~~~~~~-i~~~~~~~~r~~~~~~~~~~~--------~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~ 173 (459)
.+-.++ +.|..+ +|+.-.-+..... .+=.+++.+.+-........|--.+|-..+....+...+.+
T Consensus 143 SaFEsWliaEHne--kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil--- 217 (454)
T KOG4332|consen 143 SAFESWLIAEHNE--KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVIL--- 217 (454)
T ss_pred HHHHHHHHHHhhh--ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH---
Confidence 887775 455542 2333222222222 22222222332222222233444555444443333222111
Q ss_pred CChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHH
Q 012627 174 ETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSI 253 (459)
Q Consensus 174 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (459)
..|-.+-++..|.++.+.+. +...+.+..+++ +..+..+...+-...+...
T Consensus 218 --~~W~ENygdps~~kdlltqf-----------------------~gaa~aiaSD~k----i~LLG~iqsLFE~smytFV 268 (454)
T KOG4332|consen 218 --SSWSENYGDPSENKDLLTQF-----------------------KGAARAIASDEK----IALLGAIQSLFEGSMYTFV 268 (454)
T ss_pred --hhhhhccCChhhhHHHHHHh-----------------------hHhHHHHhcchH----HHHHHHHHHHHhhhhheee
Confidence 11212222222222111111 111122222211 1111112233222223333
Q ss_pred HHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCc--ceeehhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 012627 254 LFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRR--AFFLEAGTEMIIYMVIVAITLALEFGEGKPLP 331 (459)
Q Consensus 254 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (459)
..|.|.+-. +-....-|.++..+.+..++|+-+..++..|-..| ..+.+...+....+.+...... .. ++
T Consensus 269 FLWTPaLsp--n~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~---vs---P~ 340 (454)
T KOG4332|consen 269 FLWTPALSP--NDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSS---VS---PS 340 (454)
T ss_pred eeecccCCC--CcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhc---cC---CC
Confidence 345554321 01112347788888888888888877776654333 2223333333333333222221 11 11
Q ss_pred chhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHH
Q 012627 332 KGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVV 377 (459)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 377 (459)
......-++..+.+-.+.+..++++ .-+-++..|.+.|++.+-..
T Consensus 341 kes~~~s~i~F~~~E~cvGlfwPSi-mkmRsqyIPEearstimNfF 385 (454)
T KOG4332|consen 341 KESPSESLIGFCLFEACVGLFWPSI-MKMRSQYIPEEARSTIMNFF 385 (454)
T ss_pred cCCchHHHHHHHHHHHHHhhcchHH-HHHHHhhCCHHHHhhhhhhe
Confidence 2333444667777778888788666 34446788988888765444
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.2e-09 Score=90.89 Aligned_cols=147 Identities=10% Similarity=0.002 Sum_probs=112.6
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHH
Q 012627 264 LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVIC 343 (459)
Q Consensus 264 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (459)
.+-+..+.|+++....+..++..++.|.+.||+|+|-.+.++..++..+.+++++.. ..+..+++-.
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~-------------sy~~l~vAR~ 167 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN-------------SYPMLFVARS 167 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc-------------hhHHHHHHHH
Confidence 445667899999999999999999999999999999999999988888888777653 1234555555
Q ss_pred HHHHHHhhcccccceeeecccCCccc-ccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 012627 344 LFVLAYGRSWGPLGWLVPSELFPLEM-RSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFL 422 (459)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (459)
+-+.+.+.... ....+.++.+|.+. |++++|+.-.+..+|..++|++.|.+++..|+...+.+.++..+.-..+.+++
T Consensus 168 LQgvgsA~~~t-sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 168 LQGVGSAFADT-SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLV 246 (464)
T ss_pred HhhhhHHHHHh-hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence 55666554443 33556679998776 69999999999999999999999999999997766655555555444444444
Q ss_pred CC
Q 012627 423 PE 424 (459)
Q Consensus 423 ~~ 424 (459)
-+
T Consensus 247 i~ 248 (464)
T KOG3764|consen 247 IE 248 (464)
T ss_pred eC
Confidence 33
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.3e-08 Score=94.68 Aligned_cols=137 Identities=18% Similarity=0.159 Sum_probs=88.7
Q ss_pred HhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchh
Q 012627 255 FYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGI 334 (459)
Q Consensus 255 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (459)
..++.+.++.|-+ ....++.....++..++.++.|+++|.+|||..++.+.++..++.+...... +
T Consensus 65 ~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~-------------~ 130 (599)
T PF06609_consen 65 SILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ-------------N 130 (599)
T ss_pred HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC-------------c
Confidence 3456666778765 4556677778899999999999999999999999988888888877766432 1
Q ss_pred HHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 012627 335 GIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVF 407 (459)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (459)
.-..+....+.+.+.+.. .+....++|+.|.+.|..+.++..........+++.+...+..+.+|++.+.+
T Consensus 131 ~~~~iag~~l~GvgaG~~--~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~ 201 (599)
T PF06609_consen 131 MNTFIAGMVLYGVGAGVQ--ELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYI 201 (599)
T ss_pred HHHHHHHHHHHHHhhHHH--HHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHH
Confidence 222334444444443322 23344468999999998777666544444444555555555444455544433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.9e-07 Score=84.82 Aligned_cols=147 Identities=16% Similarity=0.230 Sum_probs=115.3
Q ss_pred CchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhh-hhHHHHHH----HHHHhhhhhhhhcc
Q 012627 29 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA-VHISMLLL----GRIFLGMGIGFGNQ 103 (459)
Q Consensus 29 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~----~r~l~G~~~g~~~~ 103 (459)
+....+.+.++..++..+.-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+...+ ...++|+..+..+.
T Consensus 241 ~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~ 320 (400)
T PF03825_consen 241 SGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHA 320 (400)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44556888888888889999999999999999999999999999998888887 55444333 34569999999999
Q ss_pred hhhHHHHhcCCCccchhHHHHHHH-HHHHHHHHHHHHHhccccccC----chhhHHHHhhHHHHHHHHHH-hcccCCC
Q 012627 104 AVPLYLSEMAPAKIRGAVNQLFQL-TTCLGILVANLINYGTEKIHP----WGWRLSLGLATVPATLMFVG-GLFLPET 175 (459)
Q Consensus 104 ~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~lg~~~~~~~~~~~~----~gwr~~f~~~~~~~~~~~~~-~~~l~e~ 175 (459)
+...++.+..|++.|+++.+++.. ..++|..+|..+++...+... ..|...+.+.++..++..++ +++.+|+
T Consensus 321 a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 321 ASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 999999999999999999999876 568999999999665554321 33666677777766666544 3445553
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.5e-08 Score=87.21 Aligned_cols=130 Identities=15% Similarity=0.077 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcchhhHHHHhcCCCccchh
Q 012627 41 YFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 120 (459)
Q Consensus 41 ~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~ 120 (459)
.+....|.++.+.+.||+|||+.+..+.++++++.++...+.+-....+.-+..-++.++.+.+.+.|..|.+|.+-|+.
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT 470 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence 45567789999999999999999999999999999988776543333333333344455567788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCC
Q 012627 121 VNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPE 174 (459)
Q Consensus 121 ~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e 174 (459)
..|.-....-+|.++.|.++..... .-..+..+.+..+++..++..++|-
T Consensus 471 gvGtcSsmaRIggI~~p~iA~~~e~----s~sl~i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIAMRAEL----STSLPIFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred chhhhhhHHhhhhhhhhHHHHHhcc----ceeehHHHHHHHHHHHHHHheeeee
Confidence 9999999999999999999622111 2345666777777777777777763
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.6e-07 Score=88.98 Aligned_cols=114 Identities=12% Similarity=0.068 Sum_probs=90.5
Q ss_pred CchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHhhhhhhhhcc
Q 012627 29 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC-----AVHISMLLLGRIFLGMGIGFGNQ 103 (459)
Q Consensus 29 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~ 103 (459)
+....+++.+...++..++.+++++++||+|+|+.+.++.++..++.+...+ .++.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777889999999999999999999999888877766655432 35667777788889999999999
Q ss_pred hhhHHHHhcCC-------CccchhHHHHHHHHHHHHHHHHHHHHhc
Q 012627 104 AVPLYLSEMAP-------AKIRGAVNQLFQLTTCLGILVANLINYG 142 (459)
Q Consensus 104 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~lg~~~~~~ 142 (459)
...++++|..+ .++.|..++......-+|..+++.+.+.
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~ 389 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGV 389 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999965 3334668899998888888888776433
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.1e-07 Score=91.06 Aligned_cols=122 Identities=11% Similarity=0.057 Sum_probs=106.0
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHh----------hhhHHHHHHHHH
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC----------AVHISMLLLGRI 92 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~ 92 (459)
.+..|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++.+.... .++.+.+...-+
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~ 359 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI 359 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence 3568999999999999999999999999999999999999999999999988865431 134445666778
Q ss_pred HhhhhhhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccc
Q 012627 93 FLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTE 144 (459)
Q Consensus 93 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~ 144 (459)
+.+++.+....+...++.+..|++++|...++.....++|..+++.++....
T Consensus 360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~ 411 (468)
T TIGR00788 360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLM 411 (468)
T ss_pred HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998755443
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4e-07 Score=82.27 Aligned_cols=119 Identities=15% Similarity=0.205 Sum_probs=91.3
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhc----ccccchhhhH-HHHHHHHHHHHHHhhhhH-------------
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTR----SRGRRASIMV-GSVSFFIGAILNACAVHI------------- 84 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~d----r~Grr~~~~~-~~~~~~~~~~~~~~~~~~------------- 84 (459)
.+..|++..+.+.+--+..+...+.+++.|..+| ||||||.++. +.++..++.++..++.++
T Consensus 59 l~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~ 138 (498)
T KOG0637|consen 59 LQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVK 138 (498)
T ss_pred HHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccc
Confidence 4456777777788888888888899999999999 5898876654 556666677777776543
Q ss_pred ----HHHHHHHHHhhhhhhhhcchhhHHHHhcCCCccchh-HHHHHHHHHHHHHHHHHHHHh
Q 012627 85 ----SMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA-VNQLFQLTTCLGILVANLINY 141 (459)
Q Consensus 85 ----~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~lg~~~~~ 141 (459)
..++++--+.=++.-....++.+++.|...++++.+ +++++....++|..+|..++.
T Consensus 139 ~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 139 PRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred hHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 344455555556677788899999999998776666 999999999999999988853
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.8e-07 Score=78.85 Aligned_cols=148 Identities=11% Similarity=-0.002 Sum_probs=109.7
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHH-HHHHHHhhhhHHHHHHHHHHhhhhhhhh
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFI-GAILNACAVHISMLLLGRIFLGMGIGFG 101 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 101 (459)
++.||+|+...+.+.+.-+.-.++.+++.|.++|++|++...+.+..+..+ +-.+..+ +++.=.+...+.|++.+..
T Consensus 292 ~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysll 369 (459)
T KOG4686|consen 292 QKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLL 369 (459)
T ss_pred HHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHH
Confidence 567888899999999999999999999999999999999877766554433 3333333 3444556778888888777
Q ss_pred cchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccC-chhhHHHHh-hHHHHHHHHHHhccc
Q 012627 102 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHP-WGWRLSLGL-ATVPATLMFVGGLFL 172 (459)
Q Consensus 102 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~-~gwr~~f~~-~~~~~~~~~~~~~~l 172 (459)
-......++...|+++.|.+.|..+...++|..+.|++++.....+. +.|--.|++ .+.+++....+.+.+
T Consensus 370 AcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 370 ACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 66677788889999999999999999999999999999766665443 345545544 344444444334444
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.1e-07 Score=84.37 Aligned_cols=172 Identities=15% Similarity=0.102 Sum_probs=127.2
Q ss_pred hHHHhhcchhHHHHhHHHHHH-HcC----CCCCchhHHHHHHHHHHHHHHHHHHHHHHHh-CCcceeehhhHHHHHHHHH
Q 012627 242 PAFQQLTGMNSILFYAPVIFQ-SLG----FGSGAALYSSVITGIALCIAALISMAFVDKF-GRRAFFLEAGTEMIIYMVI 315 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~ 315 (459)
.-+.--+++|.+...+..|+. +.+ +|.+++..+...+....-+..+++||++||+ |+|+.+..+.++..++.++
T Consensus 29 vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~ 108 (498)
T COG3104 29 VELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLV 108 (498)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 344445566666666666663 355 9999888888888888889999999999995 9999999999999999888
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCccc--ccccchHHHHHHHHHHHHHHHHHH
Q 012627 316 VAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEM--RSAGQSVVVCNNLLFTALIAQAFL 393 (459)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~~~~~~~~~~~ 393 (459)
+.... ......+.+...+...+.+.. -+....+..|++|++. |-.+.++.+...++|+.++|.+.+
T Consensus 109 L~~~~-----------~~~~~gl~i~L~~I~iG~Gl~-K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~ 176 (498)
T COG3104 109 LAISS-----------VSGPGGLYIGLALIIVGTGLF-KPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITG 176 (498)
T ss_pred Hhccc-----------cccccHHHHHHHHHHhccccc-cccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHH
Confidence 77641 011122333344444454433 3444566678887653 677888888999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 012627 394 AALCHLKFGIFLVFGGLVVIMSAFIYFFLPET 425 (459)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (459)
++.+..++...+..+++-...+++.+...++.
T Consensus 177 ~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~ 208 (498)
T COG3104 177 LLAINYGWHVGFGLAAVGMIIGLVIFLLGRRH 208 (498)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHHccch
Confidence 99999999888888888888888887777643
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2e-07 Score=91.16 Aligned_cols=145 Identities=13% Similarity=0.138 Sum_probs=105.9
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHH
Q 012627 264 LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVIC 343 (459)
Q Consensus 264 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (459)
...+.....+..++..++.++|.++.|.++||+|||+++..+..+..++.+..++. .+.+..++.-+
T Consensus 113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a-------------~~~~~~~~~Rf 179 (521)
T KOG0255|consen 113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-------------PNYWMFLIFRF 179 (521)
T ss_pred eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh-------------CcHHHHHHHHH
Confidence 45566677788889999999999999999999999999998888887777665554 22344555555
Q ss_pred HHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 012627 344 LFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLP 423 (459)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (459)
+.+++.+... .+...+..|.++++.|+.+..+ ......++.+++...+++.. +|....+...+..+..++.+++.+
T Consensus 180 l~G~~~~~~~-~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~ 255 (521)
T KOG0255|consen 180 LSGFFGSGPL-TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPP 255 (521)
T ss_pred HHHhhccchh-HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccC
Confidence 5555555444 4456677899999999999999 88888889999999998887 445554444444444444445554
Q ss_pred CC
Q 012627 424 ET 425 (459)
Q Consensus 424 ~~ 425 (459)
|.
T Consensus 256 Es 257 (521)
T KOG0255|consen 256 ES 257 (521)
T ss_pred cC
Confidence 54
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.6e-07 Score=87.54 Aligned_cols=139 Identities=20% Similarity=0.163 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhh
Q 012627 272 LYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGR 351 (459)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (459)
+++.....++..++.++.|+++|++|||+.+..+.+...++.++..... ....+.+.-.+.+.+.+.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~-------------~~~~l~~GR~l~G~g~G~ 158 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP-------------SWYQLIVGRILTGLGVGG 158 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh-------------hHHHHHHHHHHhccchhh
Confidence 7889999999999999999999999999999999888888888887753 234555666666666665
Q ss_pred cccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHhcCCC
Q 012627 352 SWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL--KFGIFLVFGGLVVIMSAFIYFFLPET 425 (459)
Q Consensus 352 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (459)
.. .+...+.+|..|++.||...+.......+|..++ .+.+....+. +|...+....+..+...+..++.||+
T Consensus 159 ~~-~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pes 232 (513)
T KOG0254|consen 159 AS-VLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPES 232 (513)
T ss_pred hh-hcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44 3446677899999999999998888888666655 6666665543 56655555555555555556777765
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.6e-07 Score=81.43 Aligned_cols=114 Identities=21% Similarity=0.233 Sum_probs=79.3
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH
Q 012627 266 FGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLF 345 (459)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (459)
+++...+.......++.++|+++.|++.||+|||++......++.++.++.++.. . .+.+....+.+...-.+.
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~----~--~~~~~~~m~~L~~~R~~L 154 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSV----G--TTSPLGVMMTLCFFRFLL 154 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCC----C--CCCCcchhhHHHHHHHHh
Confidence 5556678888899999999999999999999999998877777777666443321 1 112223344444555556
Q ss_pred HHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHH
Q 012627 346 VLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTA 386 (459)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~ 386 (459)
+++.+.-+ |+..+..+|....+.||+-.+.....+..|..
T Consensus 155 GiGIGGDY-PlSAtI~SE~an~~~RGa~iaavFa~Qg~Gil 194 (538)
T KOG0252|consen 155 GIGIGGDY-PLSATIMSESANKKTRGAFIAAVFAMQGFGIL 194 (538)
T ss_pred hccccCCC-cchHHHhhhhhhhccccceeEEEEEecchhHh
Confidence 66665444 67677889999999999888777555544333
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-06 Score=84.12 Aligned_cols=111 Identities=15% Similarity=0.122 Sum_probs=86.6
Q ss_pred hHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHh--hhhHHHHHHHHHHhhhhhhhhcchhhHHH
Q 012627 32 VLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC--AVHISMLLLGRIFLGMGIGFGNQAVPLYL 109 (459)
Q Consensus 32 ~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i 109 (459)
..+.+.....+...++.+++++++||+|+|+.+..+.++.++..+...+ .++.+.+++..++.|++.+...+...+++
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ 344 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF 344 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667778889999999999999999999888776654443322 35777888888999999999999999999
Q ss_pred HhcCCC-------ccchhHHHHHHHHHHHHHHHHHHHHhc
Q 012627 110 SEMAPA-------KIRGAVNQLFQLTTCLGILVANLINYG 142 (459)
Q Consensus 110 ~~~~~~-------~~r~~~~~~~~~~~~~G~~lg~~~~~~ 142 (459)
+|..+. ++.|..++.......+|..+|+.+++.
T Consensus 345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ 384 (444)
T PRK09669 345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGW 384 (444)
T ss_pred HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998862 234667888888888888888877543
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.3e-07 Score=84.09 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=99.1
Q ss_pred hhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhh--hHHHHHHHHHHhhhhhhhhcchhhHH
Q 012627 31 QVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV--HISMLLLGRIFLGMGIGFGNQAVPLY 108 (459)
Q Consensus 31 ~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~ 108 (459)
...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++..+.+ |.+.+++.-++.|++.+..++...++
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~ 339 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM 339 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence 3457888899999999999999999999999999999999999999988886 99999999999999999999999999
Q ss_pred HHhcCCC-------ccchhHHHHHHHHHHHHHHHHHHHHh
Q 012627 109 LSEMAPA-------KIRGAVNQLFQLTTCLGILVANLINY 141 (459)
Q Consensus 109 i~~~~~~-------~~r~~~~~~~~~~~~~G~~lg~~~~~ 141 (459)
++|..+. ++.|..++.......+|..+++.+..
T Consensus 340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g 379 (428)
T PF13347_consen 340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG 379 (428)
T ss_pred cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence 9998873 34588899999988888888887643
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00029 Score=66.49 Aligned_cols=115 Identities=9% Similarity=-0.035 Sum_probs=88.6
Q ss_pred CchhHHHHHHHhHHHHHHH-HHHhhhhhcccccchhhhHHHHHHHHHHHHHHhh----h---------------------
Q 012627 29 DNQVLTLFTSSLYFAGLVS-TFGASYVTRSRGRRASIMVGSVSFFIGAILNACA----V--------------------- 82 (459)
Q Consensus 29 s~~~~~~~~s~~~l~~~i~-~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----~--------------------- 82 (459)
+.+.+.++-+...+..++. .++.+++++|++|++++.+....+....+++++. +
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 4467899999888887766 8999999999999999988777777777666654 1
Q ss_pred ------hHHHHHHHHHHhhhhhhhhcc-hhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 012627 83 ------HISMLLLGRIFLGMGIGFGNQ-AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGT 143 (459)
Q Consensus 83 ------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~ 143 (459)
+.|...+.-+...+-...... .-..++.|.++.+|-.|..+++..+.++|.++++.+....
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~ 188 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYF 188 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133444444455555555554 6778899999999999999999999999999999775443
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.9e-06 Score=67.84 Aligned_cols=114 Identities=18% Similarity=0.142 Sum_probs=97.4
Q ss_pred CchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcchhhHH
Q 012627 29 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLY 108 (459)
Q Consensus 29 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 108 (459)
++..--.-.++.+....+++++.+.+.+++|.|+.+++|.+.+.+-.... +-++.+.++.+-.+.|++.+..+.+.-.+
T Consensus 35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~y 113 (156)
T PF05978_consen 35 SAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTY 113 (156)
T ss_pred cccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHH
Confidence 33333556677777788899999999999999999999999998666554 56678899999999999999999999999
Q ss_pred HHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 012627 109 LSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGT 143 (459)
Q Consensus 109 i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~ 143 (459)
+.+..++++|++..+++......+.++|.++....
T Consensus 114 lt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 114 LTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998875443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.8e-09 Score=103.57 Aligned_cols=144 Identities=22% Similarity=0.232 Sum_probs=99.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHh
Q 012627 271 ALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYG 350 (459)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (459)
.+.......++..+|+++.|+++||+|||+.+..+..+..++.++..+... ....+...+.-.+.+++.+
T Consensus 48 ~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~R~~~G~~~g 117 (451)
T PF00083_consen 48 SSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPS----------YNNFWMLLIGRFLIGFGIG 117 (451)
T ss_pred HHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccc----------ccccccccccccccccccc
Confidence 467788889999999999999999999999999888888877777665420 0123444455555666655
Q ss_pred hcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 012627 351 RSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCH---LKFGIFLVFGGLVVIMSAFIYFFLPET 425 (459)
Q Consensus 351 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (459)
... +....+..|..|++.|+...++.+....+|..++..+.....+. ..|.....+..+..+...+...++||+
T Consensus 118 ~~~-~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pES 194 (451)
T PF00083_consen 118 GAY-VVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPES 194 (451)
T ss_pred ccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 444 44467778999999999998888877777666655544333221 235555555555555555556677775
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.6e-06 Score=72.93 Aligned_cols=136 Identities=10% Similarity=-0.110 Sum_probs=101.2
Q ss_pred hHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 012627 251 NSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPL 330 (459)
Q Consensus 251 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (459)
.......|.+.+.++.+..+++++......+..+.++..+++.+|+|+|+-++.+..+++++..++.-....
T Consensus 30 ~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~-------- 101 (422)
T COG0738 30 CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASS-------- 101 (422)
T ss_pred hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhh--------
Confidence 334455677777799999999999999999999999999999999999999999998888888877543211
Q ss_pred CchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 012627 331 PKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALC 397 (459)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 397 (459)
......+....+...+.+..-+ ....+++.+.|++..+.-+.+...++.+|..++|.+.+.+..
T Consensus 102 --~~y~~FL~~lFila~Gi~~Let-aaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 102 --KSYGFFLVALFILASGIGLLET-AANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred --hhHHHHHHHHHHHHhhhHHHHh-ccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 1122233333333333332222 235556778888777788889999999999999999998876
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.6e-06 Score=78.36 Aligned_cols=140 Identities=14% Similarity=0.110 Sum_probs=88.1
Q ss_pred hhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH----hCCcceeeh-hhHHHHHHHHHHHHHHHHH
Q 012627 250 MNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDK----FGRRAFFLE-AGTEMIIYMVIVAITLALE 323 (459)
Q Consensus 250 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~~~-~~~~~~~~~~~~~~~~~~~ 323 (459)
......|+.+++.+ .|+++..+|.+..+.-+...+.-++.|+++|| +||||..+. +.....++..++...
T Consensus 25 ~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~---- 100 (460)
T PRK11462 25 FDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYST---- 100 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhC----
Confidence 34455666666655 89999999999999999999999999999997 577776653 323333333222111
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCC-cccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 012627 324 FGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFP-LEMRSAGQSVVVCNNLLFTALIAQAFLAALC 397 (459)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 397 (459)
.+.+ .........+..+++..++.....|- .++..|+.+ +++|++..+.-...+.+|..+++.+...+..
T Consensus 101 --p~~s-~~~~~~y~~~~~~~~~~~~t~~~ipy-~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~ 171 (460)
T PRK11462 101 --PDLS-MNGKMIYAAITYTLLTLLYTVVNIPY-CALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVN 171 (460)
T ss_pred --CCCC-cchHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 11112223333344455555444443 334456665 6789999998888888887777776655543
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.4e-05 Score=70.64 Aligned_cols=312 Identities=11% Similarity=-0.029 Sum_probs=157.1
Q ss_pred HHHhhhhhc-----ccccchhhh-HHHHHHHHHHHHHHh-----------hhhHHHHHHHHHHhhhhhhhhcchhhHHHH
Q 012627 48 TFGASYVTR-----SRGRRASIM-VGSVSFFIGAILNAC-----------AVHISMLLLGRIFLGMGIGFGNQAVPLYLS 110 (459)
Q Consensus 48 ~~~~g~l~d-----r~Grr~~~~-~~~~~~~~~~~~~~~-----------~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 110 (459)
-+.|.++.| |+||||.-+ -+..+.+......+. .++...+...-++.-+.++.-..+.-.+.-
T Consensus 80 KllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwAL 159 (510)
T KOG3574|consen 80 KLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWAL 159 (510)
T ss_pred HHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 567899999 999988533 344444444444332 244455555566777777878888888888
Q ss_pred hcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccC-------chhh---------HHHHhhHHHHHHHHHHhcccCC
Q 012627 111 EMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHP-------WGWR---------LSLGLATVPATLMFVGGLFLPE 174 (459)
Q Consensus 111 ~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~-------~gwr---------~~f~~~~~~~~~~~~~~~~l~e 174 (459)
.+.++++-|-+......+.+.|..++..+ +...... .+|. -..++.+...++.-.+..+..+
T Consensus 160 tmLs~e~lgyaST~q~Vg~~~GyfL~~~i--fLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kk 237 (510)
T KOG3574|consen 160 TMLSRENLGYASTCQSVGQTAGYFLGNVV--FLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKK 237 (510)
T ss_pred HhcCHhhcCchhHHHHHHHhhhHHhhcce--eeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 88999999998888888888888888766 3332210 0111 1122223333333222222222
Q ss_pred ChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHH
Q 012627 175 TPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSIL 254 (459)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (459)
++.. ...+| .+...++..+-++++++-+..+.+.. .....-.++....
T Consensus 238 e~~~----~~~~e-----------------------~~~~i~~~yk~l~~vLklk~v~~la~-----i~lt~K~gf~a~d 285 (510)
T KOG3574|consen 238 ENDE----SVDEE-----------------------LELGIHESYKLLRDVLKLKSVRWLAG-----ILLTGKLGFQAAD 285 (510)
T ss_pred CCch----hhhhh-----------------------hhcCHHHHHHHHHHHHcCccHHHHHH-----HHHHHHHHhhhhh
Confidence 2210 00000 00000111112344444444333322 1222333444444
Q ss_pred HhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhC--Ccceeehh--h---HHHHHHHHHHHHHHHHHhcCC
Q 012627 255 FYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFG--RRAFFLEA--G---TEMIIYMVIVAITLALEFGEG 327 (459)
Q Consensus 255 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~ 327 (459)
...+.-+-+.|++.++-++...+. .+..+..+++..|+. +|++...- . ++.......+.+.....-..+
T Consensus 286 a~t~LkLle~Gv~ke~Lal~~v~~----~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~ 361 (510)
T KOG3574|consen 286 ALTSLKLLEHGVPKEELALIAVPL----VPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSD 361 (510)
T ss_pred hccchHHHHcCCChhHheeeeeeh----hhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCC
Confidence 555666678899888776665433 344444444444432 22222110 0 111111111111111111112
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012627 328 KPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCH 398 (459)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 398 (459)
+..+..+..+.+....+........+... ++..+.+.++...|+.+.+.|...++|+-.-..+..++.|.
T Consensus 362 G~~~~~~~il~i~~y~~~~~~~ts~fv~~-maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ 431 (510)
T KOG3574|consen 362 GTFPRGYYILLITSYAFHQVFVTSMFVSG-MAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADG 431 (510)
T ss_pred CceeechHHHHHHHHHHhhhHHHHHHHHH-HHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhccc
Confidence 22222322222222222222211112122 34457888999999999999999999998888888887764
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1e-06 Score=81.38 Aligned_cols=139 Identities=16% Similarity=0.128 Sum_probs=120.6
Q ss_pred CchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcchhhHH
Q 012627 29 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLY 108 (459)
Q Consensus 29 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 108 (459)
.+...|........+-++.-++.+++..++|+-+++..++.+..+=.+..+..+|.|..+-..+++|+..+..+....+|
T Consensus 404 ~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY 483 (618)
T KOG3762|consen 404 IKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISY 483 (618)
T ss_pred cceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHH
Confidence 34445778888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccchhHHHHHHH-HHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHh
Q 012627 109 LSEMAPAKIRGAVNQLFQL-TTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG 169 (459)
Q Consensus 109 i~~~~~~~~r~~~~~~~~~-~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~ 169 (459)
+++..||+-|..+.++.+. ..++|--+|+++ ++...+.+|=|..|...++.+++.+++.
T Consensus 484 ~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslI--GG~~v~~fg~~ttf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 484 ASHVAPPGLRATAQGLLQGIFHGLGKGLGSLI--GGFVVERFGARTTFRIFGIACLVTLALF 543 (618)
T ss_pred HHhhCCCcchHHHHHHHHHHhcccCcchhhhh--hhhhheeehhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998754 567888888888 4444555778999999888888765544
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.3e-05 Score=74.55 Aligned_cols=114 Identities=15% Similarity=0.194 Sum_probs=92.9
Q ss_pred cccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhh--hHHHHHHHHHHhhhhhhhhcc
Q 012627 26 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV--HISMLLLGRIFLGMGIGFGNQ 103 (459)
Q Consensus 26 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~ 103 (459)
.+.++....+.......+..++.+++..+.+|+|+|+++.++.+++.++.++.-+.+ +.+.+++..++.+++.+...+
T Consensus 267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~ 346 (467)
T COG2211 267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP 346 (467)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence 344455566777777778888899999999999999999999999999999988875 788999999999999999999
Q ss_pred hhhHHHHhcCCC-------ccchhHHHHHHHHHHHHHHHHHHH
Q 012627 104 AVPLYLSEMAPA-------KIRGAVNQLFQLTTCLGILVANLI 139 (459)
Q Consensus 104 ~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~lg~~~ 139 (459)
...++++|..+- ++-|...+......=+|.+++..+
T Consensus 347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~ 389 (467)
T COG2211 347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI 389 (467)
T ss_pred ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999877652 233677777777776777666644
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.1e-05 Score=71.11 Aligned_cols=148 Identities=11% Similarity=0.079 Sum_probs=122.8
Q ss_pred cccccccCchhHHHHHHHhHHHHHHHHHHhhhhhc-ccccchhhhHHHHHHHHHHHHHHh---hhhHHHHHHHHHHhhhh
Q 012627 22 ETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTR-SRGRRASIMVGSVSFFIGAILNAC---AVHISMLLLGRIFLGMG 97 (459)
Q Consensus 22 ~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~d-r~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~ 97 (459)
..|.||++..+...+...+..|..++....|++.. |.++|+.-.+++.+..++..+..+ ..+.+.+...-++.|++
T Consensus 235 gg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g 314 (403)
T PF03209_consen 235 GGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLG 314 (403)
T ss_pred hhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence 35678888899999999999999999999999888 678888888888887777766444 46789999999999999
Q ss_pred hhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccc--------cCchhhHHHHhhHHHHHHHHHHh
Q 012627 98 IGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKI--------HPWGWRLSLGLATVPATLMFVGG 169 (459)
Q Consensus 98 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~--------~~~gwr~~f~~~~~~~~~~~~~~ 169 (459)
.|.......+.+.|..++++.|..+|.+.....++..++..++....+. ...+|-..|.+.++..++.+.+.
T Consensus 315 ~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 315 NGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred hhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888888886554331 23568888888888777665544
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.7e-06 Score=80.36 Aligned_cols=161 Identities=14% Similarity=0.010 Sum_probs=103.3
Q ss_pred HHHHH--cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCC-cceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhH
Q 012627 259 VIFQS--LGFGSGAALYSSVITGIALCIAALISMAFVDKFGR-RAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIG 335 (459)
Q Consensus 259 ~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (459)
.|+++ .+-+.+..|+..+...++.++++++.++...|.++ |++++.+.++++++.++....... +....
T Consensus 59 pYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~--------~~~~~ 130 (488)
T KOG2325|consen 59 PYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYV--------PNGVK 130 (488)
T ss_pred hhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhc--------ccchH
Confidence 34555 56667788999999999999999999999999886 888889999999888888554322 22234
Q ss_pred HHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHH---Hhhh-----------hH
Q 012627 336 IFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAA---LCHL-----------KF 401 (459)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~-----------~~ 401 (459)
++.++.-.+.+.+. +.....-.|.++..-.+.|.++++.......++..+||.+-..+ .+.. ..
T Consensus 131 y~mL~~R~l~Gvg~--~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YT 208 (488)
T KOG2325|consen 131 YLMLVARILTGVGV--GNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYT 208 (488)
T ss_pred HHHHHHHHHcCcCc--ccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecc
Confidence 44444444444443 33344566767766667788877777665556555555544333 2210 12
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 012627 402 GIFLVFGGLVVIMSAFIYFFLPETKQVP 429 (459)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (459)
...|+.+.+.++..+++..+.+|..+..
T Consensus 209 ap~w~m~i~~i~~~v~i~~~f~E~~~~~ 236 (488)
T KOG2325|consen 209 APAWLMAILWIIYIVIILFFFKEVYRGI 236 (488)
T ss_pred hHHHHHHHHHHHHHHHHHhheeecccCc
Confidence 3345555555566666667777765443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.3e-05 Score=69.02 Aligned_cols=51 Identities=12% Similarity=-0.006 Sum_probs=36.4
Q ss_pred HHHHHhhhhhhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHH
Q 012627 89 LGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLI 139 (459)
Q Consensus 89 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~ 139 (459)
..-++.=+-++.-..+.-.+.-.+.++++++.+..-...+.++|..++-.+
T Consensus 123 ~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tv 173 (544)
T PF13000_consen 123 WFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTV 173 (544)
T ss_pred HHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHH
Confidence 333334444455566666777778888999988888888888888887766
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.2e-06 Score=78.72 Aligned_cols=152 Identities=12% Similarity=0.081 Sum_probs=105.6
Q ss_pred HHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 012627 262 QSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIV 341 (459)
Q Consensus 262 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (459)
++.++...+.+.....+.++.+++.+.++.+.||++..+.+.. +.+...++.+.... .++.+..++.
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~----~~~~w~~~~~~~~~---------~~s~~~~ial 140 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSV----SGILWGLFGFLTAA---------VHSFPGLIAL 140 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHH----HHHHHHHHHHHHHH---------HhhhHHHHHH
Confidence 3456667788999999999999999999999999994433322 22222222222111 1234556677
Q ss_pred HHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHh------hhhHHHHHH-HHHHHHHH
Q 012627 342 ICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALC------HLKFGIFLV-FGGLVVIM 414 (459)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~ 414 (459)
-++.+..-+.++++. ..+...-+.+++|+.-+|+.+....+|+++++.+...+.. ..||.+.++ -+++.++.
T Consensus 141 r~llGl~es~~wP~~-~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~ 219 (495)
T KOG2533|consen 141 RFLLGLFESGGWPGV-VAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVL 219 (495)
T ss_pred HHHHHHHhcccchHH-HHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHH
Confidence 777788877777666 4555799999999999999999999999999998887643 234665554 45555666
Q ss_pred HHHHHHhcCCCCC
Q 012627 415 SAFIYFFLPETKQ 427 (459)
Q Consensus 415 ~~~~~~~~~~~~~ 427 (459)
++++++++|+...
T Consensus 220 gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 220 GIVVFFFLPDNPS 232 (495)
T ss_pred HheEEEEecCChh
Confidence 6677777776544
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.5e-05 Score=68.11 Aligned_cols=142 Identities=14% Similarity=0.089 Sum_probs=108.3
Q ss_pred ccccCchhHHHHHHHhHHHHHHHHHHhhhhhccc-ccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcc
Q 012627 25 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-GRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQ 103 (459)
Q Consensus 25 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 103 (459)
+-|+|+.+.|++.+...+.....++....+++|. ++|+..+...+++.++...+.+.+.-..+.. -++.|+|.|..++
T Consensus 237 ~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~ 315 (395)
T COG2807 237 DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFP 315 (395)
T ss_pred HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHH
Confidence 4467788889999999999999999999999965 6788888888888888888878765444433 4999999999999
Q ss_pred hhhHHHHhcCCCcc-chhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH
Q 012627 104 AVPLYLSEMAPAKI-RGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG 168 (459)
Q Consensus 104 ~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~ 168 (459)
.+...+.+-.++.+ -++..++.+....+=...||.+.+...+.. .+|+......+...+...+.
T Consensus 316 laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~-gsw~~~~~~l~~~~i~m~i~ 380 (395)
T COG2807 316 LALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT-GSWSAPLVLLALATLLMLIF 380 (395)
T ss_pred HHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc-CChHHHHHHHHHHHHHHHHH
Confidence 99999988876543 445555555555555566777754544433 47999988888777766554
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00023 Score=66.97 Aligned_cols=135 Identities=12% Similarity=0.071 Sum_probs=68.8
Q ss_pred HhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHH-HHh-------hhhHHHHHHHHHHhhhhhhhhcchhhHHHH
Q 012627 39 SLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAIL-NAC-------AVHISMLLLGRIFLGMGIGFGNQAVPLYLS 110 (459)
Q Consensus 39 ~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~-~~~-------~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 110 (459)
...+...+..+..-.+..|+..|.=+..++++..+..++ ..+ ...++..++.-++.|++.+.......++.+
T Consensus 53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~ 132 (437)
T TIGR00939 53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFGLAG 132 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchhhcc
Confidence 334444444444455555665433333343322222221 111 135777778888999999888887777766
Q ss_pred hcCCCccchhHHHHHHHHHHHHHHHHHHHHhccc--cccC--chhh--HHHHhhHHHHHHHHHHhcccCCChhh
Q 012627 111 EMAPAKIRGAVNQLFQLTTCLGILVANLINYGTE--KIHP--WGWR--LSLGLATVPATLMFVGGLFLPETPNS 178 (459)
Q Consensus 111 ~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~--~~~~--~gwr--~~f~~~~~~~~~~~~~~~~l~e~p~~ 178 (459)
.+|++ .++.+..+.+++.+++.++..... ..+. ..++ .-|.+..++.+++++....++..|..
T Consensus 133 -~fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~~a~~v~l~~i~~~~~l~k~~~~ 201 (437)
T TIGR00939 133 -VFPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFGTPCVVQLICIVCYLLLPKLPFA 201 (437)
T ss_pred -cCCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 55654 345566666666666655421111 1110 1122 22333444444455555567777643
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.5e-05 Score=69.43 Aligned_cols=153 Identities=14% Similarity=0.014 Sum_probs=86.7
Q ss_pred HHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 012627 261 FQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVI 340 (459)
Q Consensus 261 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (459)
.+++|++..+++.++....+..++...+.|.+.||+|||+..+...++..++.+.-- .+....+++
T Consensus 61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~--------------~~~~~~L~~ 126 (354)
T PF05631_consen 61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH--------------SSNYPVLLL 126 (354)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh--------------ccccHHHHH
Confidence 367899999999999999999999999999999999999876655444444443211 122344455
Q ss_pred HHHHHHHHHhhcccccceeeecccC----CcccccccchHHHHHHH-HHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHH
Q 012627 341 VICLFVLAYGRSWGPLGWLVPSELF----PLEMRSAGQSVVVCNNL-LFTALIAQAFLAALCHLKF--GIFLVFGGLVVI 413 (459)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~----p~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 413 (459)
.-++.+.+..+.++..-..++.|.. |++..+...+......+ +..+.+..+...+.+..+. ..++..+..+.+
T Consensus 127 GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~ 206 (354)
T PF05631_consen 127 GRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLA 206 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 5556666665555544334445542 33333444443332222 3333344444444554442 334444444444
Q ss_pred HHHHH-HHhcCCCCC
Q 012627 414 MSAFI-YFFLPETKQ 427 (459)
Q Consensus 414 ~~~~~-~~~~~~~~~ 427 (459)
++.++ ....+|..+
T Consensus 207 ~~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 207 VAAVLILKTWPENYG 221 (354)
T ss_pred HHHHHHHhcccccCC
Confidence 44443 333455443
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=9.1e-05 Score=71.78 Aligned_cols=142 Identities=15% Similarity=0.135 Sum_probs=109.3
Q ss_pred cccCchhHHHHHHHhHHHHHHHHHHhhhhhccc-ccchhhhHHHHHHHHHHHHHHhhhh---------------------
Q 012627 26 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-GRRASIMVGSVSFFIGAILNACAVH--------------------- 83 (459)
Q Consensus 26 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~--------------------- 83 (459)
++.+...+.-.++.+.-......+.++.++|-| ||-+++.++.++..++..+..++..
T Consensus 68 ~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~ 147 (571)
T KOG1237|consen 68 LHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESP 147 (571)
T ss_pred hccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCc
Confidence 444456667778888888888899999999976 9999999999988888665544321
Q ss_pred ----HHHHHHHHHHhhhhhhhhcchhhHHHHhcCC---Cc---cchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhH
Q 012627 84 ----ISMLLLGRIFLGMGIGFGNQAVPLYLSEMAP---AK---IRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRL 153 (459)
Q Consensus 84 ----~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~---~~---~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~ 153 (459)
...+....-+..+|.|+.-|...+.-+|-++ ++ ++..-+.++....++|..++..+ .....+..+|.+
T Consensus 148 s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~--~vyiq~~~~w~l 225 (571)
T KOG1237|consen 148 SKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTV--LVYIQDNVGWKL 225 (571)
T ss_pred chHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHH--HHhhhhccccee
Confidence 1366677788889999999999999999998 32 23477888999999999999887 555556678999
Q ss_pred HHHhhHHHHHHHHHHh
Q 012627 154 SLGLATVPATLMFVGG 169 (459)
Q Consensus 154 ~f~~~~~~~~~~~~~~ 169 (459)
-|.+..+..++++++.
T Consensus 226 gf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 226 GFGIPTVLNALAILIF 241 (571)
T ss_pred eccHHHHHHHHHHHHH
Confidence 9988877766655443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.7e-05 Score=54.55 Aligned_cols=66 Identities=15% Similarity=0.059 Sum_probs=59.8
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHH
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLL 88 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (459)
.++.++|.++.|++.+.+++||.+|.+...++.++..+++.+..+++...+..+.+++.++++.+.
T Consensus 19 ~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 19 QADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 455667888889999999999999999999999998899999999999999999999999887653
|
Note that many members are hypothetical proteins. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.5e-05 Score=54.44 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=55.5
Q ss_pred hHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeeh
Q 012627 242 PAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLE 304 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~ 304 (459)
.++..+.+.....-|.|.++++.|+++.++|.+..+..+..+++.++.|+++||.++++....
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~ 70 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILL 70 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHH
Confidence 455566677778889999999999999999999999999999999999999999999986653
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00021 Score=66.55 Aligned_cols=107 Identities=17% Similarity=0.358 Sum_probs=85.4
Q ss_pred hhhhHHHHHHHHHHHHHHhhh---h------HHHHHHHHHHhhhhhhhhcchhhHHHHhcCCCc---cchhHHHHHHHHH
Q 012627 62 ASIMVGSVSFFIGAILNACAV---H------ISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAK---IRGAVNQLFQLTT 129 (459)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~---~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 129 (459)
|.+.++.+++.+|.++..++. + .+.++++-.+.++|.|+.-|...++++|.++++ +|.+.+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 567888888999988855442 2 367899999999999999999999999999865 4678888999999
Q ss_pred HHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhc
Q 012627 130 CLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGL 170 (459)
Q Consensus 130 ~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~ 170 (459)
++|..++..+ .....+..||.+.|.+.++..++..+..+
T Consensus 82 n~G~~~~~~~--~~~i~~~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 82 NIGSLFSPTL--VPYIQQNYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHC--CCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhccc--chhhccccchhhhhhHHHHHHHHHHHHHH
Confidence 9999999888 55555667999999999888777655443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00012 Score=69.13 Aligned_cols=136 Identities=15% Similarity=0.165 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccc
Q 012627 278 TGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLG 357 (459)
Q Consensus 278 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (459)
.++..++.+...|.++||+|||..+........+..++..+.. |+..+ ..-...++. ......
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~---------------~~~~~-~~~l~g~~~-~~~s~~ 133 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG---------------YWFFL-LLGLSGGFS-AIFSVG 133 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH---------------HHHhh-hcccccchh-hhhhhh
Confidence 3678888899999999999999988877776666666555432 11222 111122222 222344
Q ss_pred eeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHHhcCCCCCCCH
Q 012627 358 WLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMS-AFIYFFLPETKQVPI 430 (459)
Q Consensus 358 ~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 430 (459)
..+++|....+.|....|+.+.....+..++|...+.+.+..+....+..+.+..+.. .....++||+..++.
T Consensus 134 ~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 134 FAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred hhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 6677899999999999999999999999999999999998887665555555444444 445566777655443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0052 Score=57.04 Aligned_cols=116 Identities=10% Similarity=-0.031 Sum_probs=83.0
Q ss_pred CchhHHHHHHHhHH-HHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhh---------hh---------------
Q 012627 29 DNQVLTLFTSSLYF-AGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA---------VH--------------- 83 (459)
Q Consensus 29 s~~~~~~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---------~~--------------- 83 (459)
++..+.++-+...+ +..+..++.+++.+++.|.+++-..+..+....+++++. ++
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 46777888888888 678899999999999999999988888887777777764 11
Q ss_pred --------HHHHHHHHHHhhhhhhhhcc-hhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccc
Q 012627 84 --------ISMLLLGRIFLGMGIGFGNQ-AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTE 144 (459)
Q Consensus 84 --------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~ 144 (459)
.|...+.-.+.=+-.+.... .-.....|.+..+|-.|..++++.+.+++..++..+.....
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~ 208 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLS 208 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12222222222222222222 33456788999999999999999999999999988754443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.001 Score=65.94 Aligned_cols=163 Identities=10% Similarity=0.053 Sum_probs=99.7
Q ss_pred HHHhHHHHH-HHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH-hCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 012627 253 ILFYAPVIF-QSLGFGSGAALYSSVITGIALCIAALISMAFVDK-FGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPL 330 (459)
Q Consensus 253 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (459)
+...+..|+ +.+|++...+..+........-+..+++|+++|+ +|+++.+..+.++..++..++.+... .. ..
T Consensus 6 m~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~---~~--~~ 80 (654)
T TIGR00926 6 MRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI---PS--SG 80 (654)
T ss_pred cHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC---cc--cc
Confidence 333344444 4488888888887777777778888899999997 58888888887777777766654211 00 00
Q ss_pred CchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcc---cccccchHHHHHHHHHHHHHHHHHHHHHhhh-------h
Q 012627 331 PKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLE---MRSAGQSVVVCNNLLFTALIAQAFLAALCHL-------K 400 (459)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-------~ 400 (459)
........++.+.+...+.+..-+++ .....|.++++ .+.....+.+...++|+.+++.+.+++.+.. +
T Consensus 81 ~~~~~~~~l~gLaLia~G~GgiKp~v-saf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~ 159 (654)
T TIGR00926 81 HPLHDLLDLLGLALIALGTGGIKPCV-SAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDC 159 (654)
T ss_pred cchHHHHHHHHHHHHHhhccccccCc-hhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc
Confidence 01111223333444444444333333 44456777643 3566777888889999999999999887543 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 012627 401 FGIFLVFGGLVVIMSAFIYFF 421 (459)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~ 421 (459)
+...+...+++.+++++++..
T Consensus 160 ~~~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 160 YPLAFGVPAILMILALIVFMA 180 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555544443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.051 Score=51.94 Aligned_cols=115 Identities=11% Similarity=0.019 Sum_probs=79.8
Q ss_pred CchhHHHHHHHhHH-HHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhh---------h----------------
Q 012627 29 DNQVLTLFTSSLYF-AGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA---------V---------------- 82 (459)
Q Consensus 29 s~~~~~~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---------~---------------- 82 (459)
+++.+..+-....+ +..+......++++|++|.+++-+....+.....++++. +
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 46667777776666 345667889999999999999887777666666665553 1
Q ss_pred ------hHHHHHHHHHHhhhhhhhhcc-hhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 012627 83 ------HISMLLLGRIFLGMGIGFGNQ-AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGT 143 (459)
Q Consensus 83 ------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~ 143 (459)
+.|.+.+.-++.-+-...... .-..+..|.++.+|-.|..+++..+.++|.++++.+....
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333333333333333333 3467789999999999999999999999999988774333
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0001 Score=50.34 Aligned_cols=47 Identities=11% Similarity=0.176 Sum_probs=41.7
Q ss_pred ccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHH
Q 012627 25 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSF 71 (459)
Q Consensus 25 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 71 (459)
+.|+|+.++|.+.++..+...++.+++|.++||+|+++.++....++
T Consensus 29 ~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 29 QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 36788999999999999999999999999999999998887765543
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.60 E-value=1e-05 Score=78.17 Aligned_cols=153 Identities=12% Similarity=-0.058 Sum_probs=1.0
Q ss_pred hHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHH
Q 012627 242 PAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLA 321 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 321 (459)
..+.+..........++.+-++++++..++|++.+..-++.++..++..++.+|..|-|.+..+.++++++.++..+-..
T Consensus 11 ~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf 90 (539)
T PF03137_consen 11 LGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHF 90 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHh
Confidence 34444443333444455555669999999999999999999999999999999988888888888888888887776543
Q ss_pred HHhcCC----C-------------------------------CCCch--hHHHHHHHHHHHHHHHhhcccccceeeeccc
Q 012627 322 LEFGEG----K-------------------------------PLPKG--IGIFLVIVICLFVLAYGRSWGPLGWLVPSEL 364 (459)
Q Consensus 322 ~~~~~~----~-------------------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (459)
...... . ..+.. ..++.++..++.+.+.. ...++..+|+.|.
T Consensus 91 ~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~-pl~tLG~tYiDDn 169 (539)
T PF03137_consen 91 LSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGAT-PLYTLGITYIDDN 169 (539)
T ss_dssp -------------------------------------------------------------SSS----------------
T ss_pred hcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhcccc-CCccceeeeeccc
Confidence 322110 0 00001 11222222333333322 3446778899999
Q ss_pred CCcccccccchHHHHHHHHHHHHHHHHHHHH
Q 012627 365 FPLEMRSAGQSVVVCNNLLFTALIAQAFLAA 395 (459)
Q Consensus 365 ~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (459)
++++..+...|+......+|-++|-.+.+..
T Consensus 170 v~~~~splYiGi~~~~~~lGPa~Gf~lg~~~ 200 (539)
T PF03137_consen 170 VSKKNSPLYIGILYAMSILGPALGFLLGSFC 200 (539)
T ss_dssp -------------------------------
T ss_pred cccccCccchhhhhHHhhccHHHHHHHHHHH
Confidence 9999989999998888887776665555543
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0019 Score=63.37 Aligned_cols=190 Identities=13% Similarity=0.017 Sum_probs=119.2
Q ss_pred HhHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHH
Q 012627 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 320 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
+..+.+......+..-+..+=+.++++..+.|++...+-++..+...+..+...|..|-+.+-++.++++++.++..+..
T Consensus 104 ~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPH 183 (735)
T KOG3626|consen 104 LAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPH 183 (735)
T ss_pred HHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChH
Confidence 44444444333333333333345899999999999999999999999999999999999999999999999988887764
Q ss_pred HHHh-----------cCCCC---------------------------CCchhHHHHHHHHHHHHHHHhhcccccceeeec
Q 012627 321 ALEF-----------GEGKP---------------------------LPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPS 362 (459)
Q Consensus 321 ~~~~-----------~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (459)
...- ....+ ......++++++..++.+.......++...|+.
T Consensus 184 f~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiD 263 (735)
T KOG3626|consen 184 FFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYID 263 (735)
T ss_pred HhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCcccc
Confidence 3320 00000 011112322222222222223334467788888
Q ss_pred ccCCcccccccchHHHHHHHHHHHHHHHHHHHHHh----h--------------hh-HHHHHHHHHHHHHHHHHHHHhcC
Q 012627 363 ELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALC----H--------------LK-FGIFLVFGGLVVIMSAFIYFFLP 423 (459)
Q Consensus 363 ~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~--------------~~-~~~~~~~~~~~~~~~~~~~~~~~ 423 (459)
|...++......|+.+....+|-++|-.+.+.... . .| |+.-+++.+...+...+.+++.|
T Consensus 264 Dnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fP 343 (735)
T KOG3626|consen 264 DNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFP 343 (735)
T ss_pred ccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 88888888888898888887777766666655432 1 11 33344555555555666667777
Q ss_pred CCCCCCH
Q 012627 424 ETKQVPI 430 (459)
Q Consensus 424 ~~~~~~~ 430 (459)
+..+++.
T Consensus 344 k~lp~~~ 350 (735)
T KOG3626|consen 344 KELPKSQ 350 (735)
T ss_pred ccCcccc
Confidence 6655443
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.001 Score=56.39 Aligned_cols=55 Identities=11% Similarity=0.138 Sum_probs=37.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhcccc-----ccCchhhHHHHhhHHHHHHHHHHhccc
Q 012627 116 KIRGAVNQLFQLTTCLGILVANLINYGTEK-----IHPWGWRLSLGLATVPATLMFVGGLFL 172 (459)
Q Consensus 116 ~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~-----~~~~gwr~~f~~~~~~~~~~~~~~~~l 172 (459)
|+|+....+...+.++|.++.-.. +... .....|++.+.+.+++.++-+++...+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ip--F~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIP--FLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhh--HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777778888888888877555 2222 112469999999888877766654443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0031 Score=57.87 Aligned_cols=126 Identities=20% Similarity=0.033 Sum_probs=80.8
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHH--HHHHH
Q 012627 264 LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGI--FLVIV 341 (459)
Q Consensus 264 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 341 (459)
+| +...+-+...++.+..++..+.+.|+.||+|-|.....+....+++..+=.....- .-++..+ +....
T Consensus 75 Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p-------~v~~~f~~~l~~~G 146 (480)
T KOG2563|consen 75 YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLP-------FVPPLFRRPLTHTG 146 (480)
T ss_pred hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCc-------cccccchhhhhHHh
Confidence 45 55566778888899999999999999999999988887777777766654433210 0011122 22222
Q ss_pred HHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012627 342 ICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCH 398 (459)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 398 (459)
..+......... .++.-...--+|+++|+.+..+..+.+.+|.+++..+-+.+..+
T Consensus 147 q~iaa~Aq~Fim-~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 147 QSIAAAAQPFIL-GLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred HHHHHHhhhHhh-ccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 222222222111 22233445668999999999999888888888877766665543
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.012 Score=46.52 Aligned_cols=134 Identities=14% Similarity=0.120 Sum_probs=83.3
Q ss_pred hhcchhHHHHhHHHHHHHcC------CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHH
Q 012627 246 QLTGMNSILFYAPVIFQSLG------FGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAIT 319 (459)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 319 (459)
.++++.........+++..+ .++.....-..+......+++++.+.+.+++|.|+.++++.....+.......
T Consensus 8 ~Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~- 86 (156)
T PF05978_consen 8 LFTAFQTQSFIQESVIHSVHERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY- 86 (156)
T ss_pred HHHHHhhhhHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-
Confidence 34444444444444444322 23333344455666777788888999999999999887666555444333221
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHH
Q 012627 320 LALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLA 394 (459)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 394 (459)
...+..+....+.+++.+..|.... .+..+...++.+++..++...+...+..+|..+.-.
T Consensus 87 -------------~~~~~l~~~s~l~G~~~a~lW~aqg-~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 87 -------------PNSYTLYPASALLGFGAALLWTAQG-TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred -------------hhHHHHHHHHHHHhhhhHHhhHhhh-HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2245666777778888787776653 344677778888888888777777666655554433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.029 Score=51.35 Aligned_cols=92 Identities=15% Similarity=0.042 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHhhhhhhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHh---ccccccCchhhHHHHhh
Q 012627 82 VHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINY---GTEKIHPWGWRLSLGLA 158 (459)
Q Consensus 82 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~---~~~~~~~~gwr~~f~~~ 158 (459)
..++..++.-.+.|.+.|..........++ +|++.-+ -+..+.+++.++...+.. ........+=..-|.+.
T Consensus 115 ~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytq----avm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s 189 (406)
T KOG1479|consen 115 GFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQ----AVMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITS 189 (406)
T ss_pred hhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHH----HHHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHH
Confidence 356777777888888888777777766665 4554322 233344444444443311 11111112223344555
Q ss_pred HHHHHHHHHHhcccCCChhh
Q 012627 159 TVPATLMFVGGLFLPETPNS 178 (459)
Q Consensus 159 ~~~~~~~~~~~~~l~e~p~~ 178 (459)
.+..++++++...+|..|-.
T Consensus 190 ~~~~llC~i~y~~l~~lpf~ 209 (406)
T KOG1479|consen 190 TVILLLCFVLYLVLPKLPFV 209 (406)
T ss_pred HHHHHHHHHHHHHhhcchHH
Confidence 55555566666667777743
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.005 Score=42.54 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=58.4
Q ss_pred chhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHH
Q 012627 249 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAIT 319 (459)
Q Consensus 249 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 319 (459)
+-+.++-.+|.+.++.++|..+.+++.+.+.++.++|.+...++.++.++++.+..+.+...+....+.+.
T Consensus 7 gRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 7 GRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667899999999999999999999999999999999999888777777777777666666666654
|
Note that many members are hypothetical proteins. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.024 Score=53.81 Aligned_cols=127 Identities=9% Similarity=0.086 Sum_probs=74.9
Q ss_pred CchhHHHHHHHHHHHHH-HHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCC----------CCCchh---
Q 012627 269 GAALYSSVITGIALCIA-ALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGK----------PLPKGI--- 334 (459)
Q Consensus 269 ~~~~~~~~~~~~~~~~~-~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~--- 334 (459)
+...++-....+...+. .++.+++++|++|++.+............+++.........-. ..+.+.
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 34455544444444444 6788999999999988776555555555444444221100000 000000
Q ss_pred -----HHHHHHHHHHHHHHHhh-cccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHH
Q 012627 335 -----GIFLVIVICLFVLAYGR-SWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAAL 396 (459)
Q Consensus 335 -----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (459)
.|....... ..-.++. ..+-+.|.+++|.+..++..+-.++....++++..+++.+...+.
T Consensus 123 i~~~~~W~~~~FYv-~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 123 IAILRIWSFALFYV-MAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 1122222 222256778899999999999999999999999999999888876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.045 Score=50.56 Aligned_cols=158 Identities=11% Similarity=0.037 Sum_probs=91.6
Q ss_pred HhHHHHHHH-cCCCCCchhHHHHHH-HHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 012627 255 FYAPVIFQS-LGFGSGAALYSSVIT-GIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPK 332 (459)
Q Consensus 255 ~~~~~~~~~-~g~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (459)
+..|++.+. .|++.++..--..+. .=..++.-+....+.|.++.|+.++...+...+...++.+..
T Consensus 25 fl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~------------ 92 (412)
T PF01770_consen 25 FLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGT------------ 92 (412)
T ss_pred cchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHC------------
Confidence 334555554 788877665333333 334455556777899999999988877766666555544431
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHH
Q 012627 333 GIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK--FGIFLVFGGL 410 (459)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 410 (459)
.....-+.-+.++...+.-. ..+.++-...|+++--++.+......-+|..++..+...+....+ +.....+...
T Consensus 93 -sv~~mq~~q~~yg~~~a~ev--ay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~ 169 (412)
T PF01770_consen 93 -SVLAMQLMQFFYGLATAAEV--AYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLA 169 (412)
T ss_pred -cHHHHHHHHHHHHHHHHHHH--HHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 12333344444444433221 112233344566766777778777777777777776666655332 4444455556
Q ss_pred HHHHHHHHHHhcCCCCC
Q 012627 411 VVIMSAFIYFFLPETKQ 427 (459)
Q Consensus 411 ~~~~~~~~~~~~~~~~~ 427 (459)
...++.+..+++|..++
T Consensus 170 ~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 170 SVSLALLIALFLPMPKR 186 (412)
T ss_pred HHHHHHHHHHHcCCCCc
Confidence 66666666777776543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.00033 Score=63.19 Aligned_cols=117 Identities=9% Similarity=0.004 Sum_probs=2.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhc
Q 012627 273 YSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRS 352 (459)
Q Consensus 273 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (459)
..+..+.++..+|+.+..+..-+..+++.+....+.=.+..-++............+....+.+..++...++++..+ -
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNG-y 264 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNG-Y 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccc-h
Confidence 345678899999999887643221123323222111111111111110000000000011222333444444444433 2
Q ss_pred ccccceeeecccCCcccccccchHHHHHHHHHHHHHHH
Q 012627 353 WGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQ 390 (459)
Q Consensus 353 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 390 (459)
.+++...+..+..++++|..+-.+....-..|-.+|..
T Consensus 265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ 302 (309)
T PF01733_consen 265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSV 302 (309)
T ss_dssp --HHHH--------------------------------
T ss_pred hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666667777777777655555555555555444
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0017 Score=59.46 Aligned_cols=144 Identities=17% Similarity=0.131 Sum_probs=89.4
Q ss_pred chhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH----hCCcceeehhh-HHHHHHHHHHHHHHHHH
Q 012627 249 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDK----FGRRAFFLEAG-TEMIIYMVIVAITLALE 323 (459)
Q Consensus 249 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~~~~~-~~~~~~~~~~~~~~~~~ 323 (459)
+...-..|.+.+++..|.+....+......-+.+++.+++.|..+|| +||||..+... ....++++++.......
T Consensus 47 ~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig 126 (498)
T KOG0637|consen 47 GWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIG 126 (498)
T ss_pred HHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhh
Confidence 34556677888889999998888888888889999999999999996 68888877544 33444455444443322
Q ss_pred hcCCCCCCc----hhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccc-cchHHHHHHHHHHHHHHHHHH
Q 012627 324 FGEGKPLPK----GIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSA-GQSVVVCNNLLFTALIAQAFL 393 (459)
Q Consensus 324 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~g~~~~~~~~~~~~~~~~~~ 393 (459)
.....+... ......++..-+.-++.....+|. -++..|+...+.+.+ +.+....+..+|+.++-...+
T Consensus 127 ~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~-ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 127 LLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPC-RALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred HHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhH-HHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 211111111 111222223333444444455555 445567776666666 888887777777766544443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0085 Score=56.89 Aligned_cols=149 Identities=12% Similarity=0.045 Sum_probs=107.0
Q ss_pred cCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHh----------hhhHHHHHHHHHHhhhh
Q 012627 28 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC----------AVHISMLLLGRIFLGMG 97 (459)
Q Consensus 28 ~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~l~G~~ 97 (459)
.|+...|.+..+..++..++........-+..-|+++..+.++..+..+.-.. .++.+..+..-++..+.
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~ 331 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI 331 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence 88888999998899999999999988888888899988888877766654221 12333344445667777
Q ss_pred hhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccc------cCchhhHHHHhhHHHHHHHHHHhcc
Q 012627 98 IGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKI------HPWGWRLSLGLATVPATLMFVGGLF 171 (459)
Q Consensus 98 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~------~~~gwr~~f~~~~~~~~~~~~~~~~ 171 (459)
.+..+-+...+++|..|+..-|..+++.....++|..++..++...... +..+-.+..++..+..++.+.+..+
T Consensus 332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~l 411 (433)
T PF03092_consen 332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFL 411 (433)
T ss_pred HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 7777888889999999999999999999999999998888775443221 1112234445555555555555556
Q ss_pred cCCCh
Q 012627 172 LPETP 176 (459)
Q Consensus 172 l~e~p 176 (459)
+|+..
T Consensus 412 Lp~~~ 416 (433)
T PF03092_consen 412 LPPQK 416 (433)
T ss_pred cCCCc
Confidence 77654
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.13 Score=48.35 Aligned_cols=164 Identities=9% Similarity=-0.079 Sum_probs=80.7
Q ss_pred HHHhhcchhHHHHhHHHHHHHc-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHH
Q 012627 243 AFQQLTGMNSILFYAPVIFQSL-GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLA 321 (459)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 321 (459)
.+....+--...+..+.++.+. .-+-.........-.+..++.....|.+.||..|.+....+....-++..+......
T Consensus 11 h~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~ 90 (432)
T PF06963_consen 11 HFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFL 90 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444555566666653 223334455555566777778888899999999998877776655444444333333
Q ss_pred HHhcCCCCCC--chhHHHHHHHHHHHHHHHhhccccccee----eecccC--CcccccccchHHHHHHHHHHHHHHHHHH
Q 012627 322 LEFGEGKPLP--KGIGIFLVIVICLFVLAYGRSWGPLGWL----VPSELF--PLEMRSAGQSVVVCNNLLFTALIAQAFL 393 (459)
Q Consensus 322 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--p~~~~~~~~g~~~~~~~~~~~~~~~~~~ 393 (459)
.......... ............+.+..-..+....... ++..+. +++.....++...-+=.....++|.+.|
T Consensus 91 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG 170 (432)
T PF06963_consen 91 LLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVG 170 (432)
T ss_pred HHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222221111 1112222222222222111111111111 111222 2223344444444444457889999999
Q ss_pred HHHhhhhHHHHHH
Q 012627 394 AALCHLKFGIFLV 406 (459)
Q Consensus 394 ~~~~~~~~~~~~~ 406 (459)
.+.+..+......
T Consensus 171 ~l~t~~s~~~~~~ 183 (432)
T PF06963_consen 171 LLMTFASPVIAAI 183 (432)
T ss_pred HHhhccCHHHHHH
Confidence 9988666544433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.057 Score=52.45 Aligned_cols=117 Identities=15% Similarity=0.070 Sum_probs=69.6
Q ss_pred ccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhH-HHHHHH-HHHHHH----HhhhhH-HHHHHHHHHhhhh
Q 012627 25 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMV-GSVSFF-IGAILN----ACAVHI-SMLLLGRIFLGMG 97 (459)
Q Consensus 25 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~-~~~~~~-~~~~~~----~~~~~~-~~l~~~r~l~G~~ 97 (459)
.+|.+....+.+.+++.+|.++|+.+++++.++.-|+....- +..+.+ ++..+. ++...+ ..+...-++.++.
T Consensus 44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l 123 (521)
T PRK03612 44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLL 123 (521)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777788999999999999999999988744333322111 111111 111111 111111 2233444667888
Q ss_pred hhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhc
Q 012627 98 IGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYG 142 (459)
Q Consensus 98 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~ 142 (459)
.|+..|....+..+... ++-++..|-......+|.++|.++..+
T Consensus 124 ~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~ 167 (521)
T PRK03612 124 IGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPF 167 (521)
T ss_pred HHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHH
Confidence 88888887776655332 224566777777777888888777433
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.11 Score=48.11 Aligned_cols=109 Identities=14% Similarity=0.110 Sum_probs=78.6
Q ss_pred CchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHH--HHHHH---HHHHHhhhhHHHHHHHHHHhhhhhhhhcc
Q 012627 29 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSV--SFFIG---AILNACAVHISMLLLGRIFLGMGIGFGNQ 103 (459)
Q Consensus 29 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~--~~~~~---~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 103 (459)
..++..+...+|.+|-.++.--... . |+ |++.+.+.+ +..+. ....-+.++.|..++.-+..|+..|..+.
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~-~-ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPF-F-RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceee-e-eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 3555667777777766665432222 1 33 333333222 22222 22333468999999999999999999999
Q ss_pred hhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 012627 104 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINY 141 (459)
Q Consensus 104 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~ 141 (459)
.+...+.|-.++++|..+++..+.+-++|..++..++.
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l 392 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGL 392 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999854
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.31 Score=44.81 Aligned_cols=179 Identities=16% Similarity=0.138 Sum_probs=79.7
Q ss_pred HhHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHH
Q 012627 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 320 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
+.........+.+.+-.+++.+++-.+.. +..+.....+.+.+..++.-.+.-+...|.....+..+.....+......
T Consensus 25 llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il~i~~l~ 103 (406)
T KOG1479|consen 25 LLGIGTLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAILFIVTLD 103 (406)
T ss_pred HHhcccccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566777777777766433222 44444444555555444444444444333222233333333333322222
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhh--
Q 012627 321 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCH-- 398 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-- 398 (459)
..... .........+..++....+..+.+...+.+ +... ..+|++.....++=.+..+.+ ..+...+.....+.
T Consensus 104 ~~~v~-~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~-~G~a-~~~P~~ytqavm~G~a~aG~l-~Sl~~i~tka~~~~~~ 179 (406)
T KOG1479|consen 104 LALVK-TDTWTNGFFLVTLIIVVLLNLANAVVQGSL-YGLA-GLFPSEYTQAVMSGQALAGTL-TSLLRILTKAAFSDSR 179 (406)
T ss_pred HHhhc-cCCccchhHHHHHHHHHHHhhhhhhhccch-hhhh-hcCCHHHHHHHHhcchhHhHH-HHHHHHHHHHhcCCCC
Confidence 22211 222222333444445555555555444444 4553 556766543332222222222 12222222222222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCC
Q 012627 399 LKFGIFLVFGGLVVIMSAFIYFFLPE 424 (459)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (459)
.+...++..+.+..+++++++..+++
T Consensus 180 ~sA~~yF~~s~~~~llC~i~y~~l~~ 205 (406)
T KOG1479|consen 180 TSALIYFITSTVILLLCFVLYLVLPK 205 (406)
T ss_pred ceeehhHHHHHHHHHHHHHHHHHhhc
Confidence 22345666677777777777775554
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.27 Score=46.42 Aligned_cols=99 Identities=17% Similarity=0.277 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHhhhhhc---ccccchhhhHHHHHHHHHHHHHHhh------------------hhHHHHHHHHHHhhhhh
Q 012627 40 LYFAGLVSTFGASYVTR---SRGRRASIMVGSVSFFIGAILNACA------------------VHISMLLLGRIFLGMGI 98 (459)
Q Consensus 40 ~~l~~~i~~~~~g~l~d---r~Grr~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~l~G~~~ 98 (459)
..++..++..+.+.+.+ |+||++.+..+.++..++.++.-.. +++...++.-++.|++.
T Consensus 288 ~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D 367 (461)
T KOG3098|consen 288 IGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGD 367 (461)
T ss_pred HhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHH
Confidence 33444445555666664 6799999999999888888776543 24667888889999999
Q ss_pred hhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHH
Q 012627 99 GFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLI 139 (459)
Q Consensus 99 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~ 139 (459)
+......+.++++.. +++|..+.++...-.+++..++...
T Consensus 368 ~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 368 ACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999 5669999999988888888776555
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.75 Score=41.85 Aligned_cols=58 Identities=22% Similarity=0.247 Sum_probs=35.3
Q ss_pred HhHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHH---HHHHHHHHHHHHHHHHHHH-----HhCCcceeeh
Q 012627 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSS---VITGIALCIAALISMAFVD-----KFGRRAFFLE 304 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~g~l~d-----~~g~~~~~~~ 304 (459)
..+..+........ -.|.+++..|.|-++.+... -++++ -++...++| |+||||..+.
T Consensus 38 ~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P~sL-----KllWaPiVDs~y~k~~GrrksWvv 103 (510)
T KOG3574|consen 38 FLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWPFSL-----KLLWAPIVDSVYSKRFGRRKSWVV 103 (510)
T ss_pred HHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhHHHH-----HHHHHhhhHHHHHHhhccccceee
Confidence 34556666655454 88999987776655544332 22222 345555666 9999987664
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.33 Score=43.33 Aligned_cols=134 Identities=19% Similarity=0.134 Sum_probs=76.9
Q ss_pred HHHhHHHHHHHcCCCC--CchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 012627 253 ILFYAPVIFQSLGFGS--GAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPL 330 (459)
Q Consensus 253 ~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (459)
.....+.+..+.+.+. ...+.......+...++.+..|++.||.|||+....+......+........
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~---------- 90 (338)
T COG0477 21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP---------- 90 (338)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc----------
Confidence 3445555656655544 3678888888888888889999999999988655544433222211111111
Q ss_pred CchhHHHHHHHHHHHHHHHhhcccccceeeecccCCc-ccccccchHHHH-HHHHHHHHHHHHHHHHHhh
Q 012627 331 PKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPL-EMRSAGQSVVVC-NNLLFTALIAQAFLAALCH 398 (459)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~ 398 (459)
....+.........+.+.+ ...+....+..|..|+ +.|+...+.... ....+..+++.+.+.+...
T Consensus 91 -~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 91 -NVGLALLLILRLLQGLGGG-GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred -cchHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112222222222333333 2334445666788887 567777777766 4666666776555555443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.53 Score=44.47 Aligned_cols=65 Identities=17% Similarity=0.144 Sum_probs=35.7
Q ss_pred hHHHhhcchhHHHHhHHHHHHH--cCCCCCchhHH---HHHHHHHHHHHHHHHHHHHHHhCCcceeehhh
Q 012627 242 PAFQQLTGMNSILFYAPVIFQS--LGFGSGAALYS---SVITGIALCIAALISMAFVDKFGRRAFFLEAG 306 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~---~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 306 (459)
.++.+.........-.|.++++ .+.+-.+.+.+ .-++++=-+-+.++=...++|+||||..++-.
T Consensus 8 LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~ 77 (544)
T PF13000_consen 8 LYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPI 77 (544)
T ss_pred HHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHH
Confidence 4555555544444567888877 55554444332 22333333333344445566899999776543
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=2 Score=41.92 Aligned_cols=48 Identities=17% Similarity=0.128 Sum_probs=30.4
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHh-hhhH-HHHHHHHHHHHHHHHH
Q 012627 370 RSAGQSVVVCNNLLFTALIAQAFLAALC-HLKF-GIFLVFGGLVVIMSAF 417 (459)
Q Consensus 370 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~ 417 (459)
-+...|-.+....+|+.+|+.+.+.+.- ..|. ...++.+.+.++++++
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~ 192 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALV 192 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 3566777888888999999888887654 4452 3334444444444433
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.032 Score=48.57 Aligned_cols=133 Identities=14% Similarity=0.043 Sum_probs=85.0
Q ss_pred HHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcchhhHHHHhcC
Q 012627 34 TLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMA 113 (459)
Q Consensus 34 ~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 113 (459)
|.+.-+-.+-..+..+.+....||+---+=+.+..++.+.+..+.+++++.++-+.+-.+..++.|.....-.++-+.+-
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y~ 144 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRYP 144 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccCC
Confidence 44444445555566666777888875444455666777888888899999999999999999998887776665544332
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcc
Q 012627 114 PAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF 171 (459)
Q Consensus 114 ~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~ 171 (459)
....+-+..+.+.+.++|..--..+......+-|...++...+.++.+...++
T Consensus 145 -----~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~ 197 (409)
T KOG3880|consen 145 -----SIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFF 197 (409)
T ss_pred -----CceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHh
Confidence 23344555666666666654422232223456777777776666555555444
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.84 Score=43.86 Aligned_cols=114 Identities=12% Similarity=0.111 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCC-----------CCchhHHHHH-------HHHHH
Q 012627 283 CIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKP-----------LPKGIGIFLV-------IVICL 344 (459)
Q Consensus 283 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~-------~~~~~ 344 (459)
++...+-.++++++++.+++............+.++.... ..+.-+ .+....+... .+..+
T Consensus 73 ~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP-~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv 151 (491)
T PF03219_consen 73 ILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYP-NRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYV 151 (491)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhh-chhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 4445667889999999987765555555544444443321 110000 0111111110 01111
Q ss_pred HHHHHh-hcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 012627 345 FVLAYG-RSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALC 397 (459)
Q Consensus 345 ~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 397 (459)
..-.++ ...+-+.|.+++|.++.++..+..++....++++..+++.+.....+
T Consensus 152 ~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 152 MAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122 22223457788999999999999999999999999999988888766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.99 E-value=4.2 Score=40.12 Aligned_cols=162 Identities=10% Similarity=0.055 Sum_probs=89.1
Q ss_pred HHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh-CCcceeehhhHHHHHHHHHHHHHHHHHhcCC--------C
Q 012627 258 PVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKF-GRRAFFLEAGTEMIIYMVIVAITLALEFGEG--------K 328 (459)
Q Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 328 (459)
.++...++.+...+.-.............+.+++++|.+ ||.+.+.++..+..+++.++........... .
T Consensus 62 ~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~ 141 (571)
T KOG1237|consen 62 TYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGG 141 (571)
T ss_pred HHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCC
Confidence 333345777766666666666666777778899999975 7888888888888888776666554442111 0
Q ss_pred -CCCchhHH-HHHHHHHHHHHH-HhhcccccceeeecccCC----ccccc--ccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 012627 329 -PLPKGIGI-FLVIVICLFVLA-YGRSWGPLGWLVPSELFP----LEMRS--AGQSVVVCNNLLFTALIAQAFLAALCHL 399 (459)
Q Consensus 329 -~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p----~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 399 (459)
.-+..... ..++...+...+ ...+.-+....+-.|.++ .+.+. .-+.......+.|..++..+..+.-++.
T Consensus 142 ~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~ 221 (571)
T KOG1237|consen 142 NVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNV 221 (571)
T ss_pred CcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 01111111 111122222221 122233333455567776 22223 4455556667777777777777776776
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 012627 400 KFGIFLVFGGLVVIMSAFIY 419 (459)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~ 419 (459)
+|..-+....++...+++++
T Consensus 222 ~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 222 GWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred cceeeccHHHHHHHHHHHHH
Confidence 66554444444444444433
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.67 E-value=4.7 Score=38.24 Aligned_cols=131 Identities=11% Similarity=-0.016 Sum_probs=73.9
Q ss_pred CCchhHHHHHHHH-HHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCC-----------CCCch--
Q 012627 268 SGAALYSSVITGI-ALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGK-----------PLPKG-- 333 (459)
Q Consensus 268 ~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~-- 333 (459)
++....+=...-+ +.++..++..++.++..+.+++...........++++.........-. ..+..
T Consensus 60 ae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~ 139 (509)
T COG3202 60 AESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLK 139 (509)
T ss_pred chhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccce
Confidence 3334444333333 455666777888899888887766555555555555544331100000 01100
Q ss_pred ------hHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012627 334 ------IGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCH 398 (459)
Q Consensus 334 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 398 (459)
..|...+.....-.-.....+-+.+..++|.+..++..+-.++.+..++++..+++.+..++.++
T Consensus 140 ~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 140 WFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred eeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 00222122111111111222224466678999999999999999999999999999999887663
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.42 E-value=3.2 Score=36.00 Aligned_cols=134 Identities=11% Similarity=0.083 Sum_probs=88.3
Q ss_pred HHHHHHHhHHHHHHHHHHhhhhhcccccc--hhhhHHHHHHHHHHHHHHhh----h---hHHHHHHHHHHhhhhhhhhcc
Q 012627 33 LTLFTSSLYFAGLVSTFGASYVTRSRGRR--ASIMVGSVSFFIGAILNACA----V---HISMLLLGRIFLGMGIGFGNQ 103 (459)
Q Consensus 33 ~~~~~s~~~l~~~i~~~~~g~l~dr~Grr--~~~~~~~~~~~~~~~~~~~~----~---~~~~l~~~r~l~G~~~g~~~~ 103 (459)
-|.+.+.++++..+|+-+..++..|-.+| +.+.+..++.++...+..+. | +...-+++-++.-.+.|..+|
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 38999999999999999998888776554 44555555555444443322 1 122224455555667788999
Q ss_pred hhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH
Q 012627 104 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG 168 (459)
Q Consensus 104 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~ 168 (459)
....+-.++.|++.|...+.++..-.++=..++-.. .-......+=|..|-++.....+..+.
T Consensus 364 SimkmRsqyIPEearstimNfFRvPLnifvClvLyn--lh~~~~p~~tr~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYN--LHVDAFPTTTRNMFGICSAFLFVASIL 426 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhhee--cccccCccccchhhhhhHHHHHHHHHH
Confidence 999999999999999999998876655443333221 112222245678888877776666443
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.14 E-value=11 Score=33.87 Aligned_cols=99 Identities=21% Similarity=0.286 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcchhhHHHHhcCCC--cc
Q 012627 40 LYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPA--KI 117 (459)
Q Consensus 40 ~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~ 117 (459)
.++....++++.+.+..++|-|.++.++...+...-.. =+=+.+..++-.-.+.|++.+..+..--+|+++.-.. ++
T Consensus 67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~-Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~ 145 (390)
T KOG3097|consen 67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAA-NLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQ 145 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-hcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHh
Confidence 34455667777779999999999999887776553322 1336788899999999999999998877776655432 22
Q ss_pred c-------------hhHHHHHHHHHHHHHHHHHHH
Q 012627 118 R-------------GAVNQLFQLTTCLGILVANLI 139 (459)
Q Consensus 118 r-------------~~~~~~~~~~~~~G~~lg~~~ 139 (459)
| |..+.+++.+.-.|..+...+
T Consensus 146 ~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli 180 (390)
T KOG3097|consen 146 RGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLI 180 (390)
T ss_pred hhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 3 334455555555555555544
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.6 Score=43.53 Aligned_cols=118 Identities=6% Similarity=-0.063 Sum_probs=71.0
Q ss_pred eehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcc---cccccchHHH
Q 012627 302 FLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLE---MRSAGQSVVV 378 (459)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~ 378 (459)
+..+.++..++.+++.+....... .+........+.+.+...+.+..= |....+..|.++++ .|.......+
T Consensus 4 I~~g~~~~~~G~~ll~l~~~~~~~----~~~~~~~~~~~gL~lia~G~G~~K-~ni~~~~~dq~~~~~~~~~~~~F~~fY 78 (372)
T PF00854_consen 4 ILLGSIVYLLGHVLLTLSAIPPSL----PSGIQLGLFYIGLALIAVGTGGIK-PNISPFGADQYDEDDDSRRDSFFNWFY 78 (372)
T ss_dssp HHHHHHHHHHHHHH--HHHTSSSC----------CHHHHHHHHHHHHHHCCH-HHHHHHHHHCSSTTTTTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHhcchh----hhhHHHHHHHHHHHHHHhcccccc-ccHHHHHHHHhcccchhhhhhhHHHHH
Confidence 445556666666665544321110 011112333444444455544333 33355557888765 3556677778
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 012627 379 CNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPE 424 (459)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (459)
...++|..++....+++.++.++...+.+..++.+++++.+...++
T Consensus 79 ~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~ 124 (372)
T PF00854_consen 79 WGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRK 124 (372)
T ss_dssp HHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCc
Confidence 8899999999999999999899888888888888887777665543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=91.04 E-value=4.3 Score=38.68 Aligned_cols=22 Identities=18% Similarity=0.301 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 012627 402 GIFLVFGGLVVIMSAFIYFFLP 423 (459)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~ 423 (459)
..++..+.+..+++++.+..++
T Consensus 175 ~~YF~~a~~v~l~~i~~~~~l~ 196 (437)
T TIGR00939 175 LGYFGTPCVVQLICIVCYLLLP 196 (437)
T ss_pred hhHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666666666665554
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.03 E-value=0.25 Score=44.57 Aligned_cols=119 Identities=13% Similarity=-0.021 Sum_probs=59.6
Q ss_pred HHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHH------hh------hhHHHHHHHHHHhhhhhhhhcch----hhH
Q 012627 44 GLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA------CA------VHISMLLLGRIFLGMGIGFGNQA----VPL 107 (459)
Q Consensus 44 ~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~------~~------~~~~~l~~~r~l~G~~~g~~~~~----~~~ 107 (459)
..+..++.|...|+..|+|++...+.+.-++.+.++ +. .++..+..+-++.-..++..... ...
T Consensus 76 ~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~ 155 (503)
T KOG2601|consen 76 QLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTIL 155 (503)
T ss_pred HHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEE
Confidence 456667788899999999999887765444333332 22 24555554444443322221111 111
Q ss_pred HHHhcC----CCccchhH---HHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHH
Q 012627 108 YLSEMA----PAKIRGAV---NQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATL 164 (459)
Q Consensus 108 ~i~~~~----~~~~r~~~---~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~ 164 (459)
.-.||. ..+.+... .+.....-..-..+.|.+ ........+-|..-...++..++
T Consensus 156 i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~--tg~Iitfvsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 156 IERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVI--TGLIITFVSLRASAGTFAAWALV 217 (503)
T ss_pred ecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhh--hcccceeechhhhhhhhHHHHHH
Confidence 123343 22333333 355555556667777777 33333333455443333443333
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.38 E-value=1.4 Score=38.82 Aligned_cols=73 Identities=15% Similarity=0.187 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHH
Q 012627 68 SVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLIN 140 (459)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~ 140 (459)
.+++.+...+..+.+++|...+.-+..|+-.|..++...--+.+-.++++|-.+++....+-++|..++..++
T Consensus 326 Nl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~la 398 (409)
T KOG3880|consen 326 NLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLA 398 (409)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHh
Confidence 3445555566677899999999999999999999999888888889999999999999999999999999884
|
|
| >PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea | Back alignment and domain information |
|---|
Probab=87.64 E-value=3.6 Score=38.54 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q 012627 279 GIALCIAALISMAFVDKFG 297 (459)
Q Consensus 279 ~~~~~~~~~~~g~l~d~~g 297 (459)
.+..++..+..|++..|.+
T Consensus 5 ~i~~i~~ii~~G~~~~~~~ 23 (385)
T PF03547_consen 5 AILPIFLIILLGYLLGRFG 23 (385)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3444555556677777653
|
Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2881 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.25 E-value=29 Score=29.85 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCcceeehhhHHHHH
Q 012627 279 GIALCIAALISMAFVDKFGRRAFFLEAGTEMII 311 (459)
Q Consensus 279 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 311 (459)
.++..+..+.+-.++.|+.-|.+...+..+..+
T Consensus 250 ~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~ 282 (294)
T KOG2881|consen 250 ALCTGLAVIGGKYLASKISVRTVTLIGGILFII 282 (294)
T ss_pred HHHHHHHHhhhHHHhhhheeEEEEEecchhHHH
Confidence 344444444445677888888877766554433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 459 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 3e-37 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 459 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 7e-05
Identities = 59/524 (11%), Positives = 127/524 (24%), Gaps = 180/524 (34%)
Query: 3 DFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR---G 59
FL R+ Y Q L+ F V+R +
Sbjct: 92 KFLMSPIKTEQRQP-----SMMTRMYIEQRDRLYND-------NQVFAKYNVSRLQPYLK 139
Query: 60 RRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRG 119
R +++ + + + G+ G G K
Sbjct: 140 LRQALLELRPAKNV-------LID-----------GVL-GSG--------------K--- 163
Query: 120 AVNQLFQLTTCLGILVANLINYGTEKIHPWG--WRLSLGLATVPATLM------------ 165
T + + V +Y + + W L+L P T++
Sbjct: 164 ---------TWVALDVCL--SYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 166 -FVGGLFLPETPNSLVEQGKLDEARK------------VLEKVRGTANVDAEF------- 205
+ + + E R+ VL V+ +A F
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQ-AELRRLLKSKPYENCLLVLLNVQNAKAWNA-FNLSCKIL 269
Query: 206 --------SDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYA 257
+D + A+ + L++ L Q L
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP-QDL---------- 318
Query: 258 PVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVA 317
P V+T + ++I+ + D + + + ++ +
Sbjct: 319 P---------------REVLTTNPRRL-SIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 318 ITLALEFGEGKPLPKGIGIFL------VIVICLFVLAYGRSWGPLGWLVPSELFPLEM-- 369
+ LE E + + + +F I++ L W + + +
Sbjct: 363 LN-VLEPAEYRKMFDRLSVFPPSAHIPTILLSLI------------WFDVIKSDVMVVVN 409
Query: 370 RSAGQSVVVCNNLLFTALIAQAFLAALCHL------------KFGIFLVF---GGLVVIM 414
+ S+V T I +L L + I F + +
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 415 SAFIYFFL--------PETKQVPIEEIYLLFENHWFWKRIVKED 450
+ Y + + ++L F + ++I +
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDF--RFLEQKIRHDS 511
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 459 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.98 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.94 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.4 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.34 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.32 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.31 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.3 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.28 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.12 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-46 Score=361.76 Aligned_cols=404 Identities=27% Similarity=0.476 Sum_probs=319.0
Q ss_pred ccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHH------------------hhhhHHH
Q 012627 25 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA------------------CAVHISM 86 (459)
Q Consensus 25 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~------------------~~~~~~~ 86 (459)
..+.++.+.|++.+++.+|..+|++++|+++||+|||+++.++.+++.+++++++ +++|++.
T Consensus 49 ~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (491)
T 4gc0_A 49 SESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPE 128 (491)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHH
Confidence 3355677889999999999999999999999999999999999999999999998 4789999
Q ss_pred HHHHHHHhhhhhhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccc------cCchhhHHHHhhHH
Q 012627 87 LLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKI------HPWGWRLSLGLATV 160 (459)
Q Consensus 87 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~------~~~gwr~~f~~~~~ 160 (459)
++++|+++|++.|+..+....+++|+.|+++|++..++.+.+..+|.++++.++...... ...+||+.+.+..+
T Consensus 129 l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (491)
T 4gc0_A 129 FVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECI 208 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhh
Confidence 999999999999999999999999999999999999999999999999999886554332 23579999999999
Q ss_pred HHHHHHHHhcccCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHH
Q 012627 161 PATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALG 240 (459)
Q Consensus 161 ~~~~~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (459)
+.++..+..+++||||+|+..+++.+++++.+++....+..+++..+..+...++++.. . ... ....++......
T Consensus 209 ~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~-~~~~~~~~~~~~- 283 (491)
T 4gc0_A 209 PALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTG-G--RLL-MFGVGVIVIGVM- 283 (491)
T ss_dssp HHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T--HHH-HSCCTHHHHHHH-
T ss_pred hhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhh-h--HHH-HhcccHHHHHHH-
Confidence 98888888899999999999999999999988877655443333332222222221111 1 111 122233333333
Q ss_pred HhHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHH
Q 012627 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 320 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
...+.+..+.+.+..|.|.+.+..+.+...........++..+++.++++++.||+|||+.+..+.....++++.+....
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~ 363 (491)
T 4gc0_A 284 LSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF 363 (491)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHH
Confidence 56677788888889999999888888877777788888899999999999999999999998888777777766655443
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012627 321 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 400 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (459)
.. ....+..++...++..+++.++.++.+.+.+|++|++.|+++.|+.+..+++++.+++.+++.+.+...
T Consensus 364 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~ 434 (491)
T 4gc0_A 364 YT---------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSW 434 (491)
T ss_dssp HT---------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHH
T ss_pred hc---------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 122344455555666677777888888899999999999999999999999999999988877644321
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhccccc
Q 012627 401 -------FGIFLVFGGLVVIMSAFIYFFLPETKQVPIEEIYLLFENHWF 442 (459)
Q Consensus 401 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (459)
...++++++++++..++.++++||||++++||+|+..|++.+
T Consensus 435 ~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 435 LVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETK 483 (491)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC----
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCc
Confidence 234567777788888888899999999999999988876544
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-37 Score=294.79 Aligned_cols=366 Identities=13% Similarity=0.056 Sum_probs=263.4
Q ss_pred cccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHh----hhhHHHHHHHHHHhhhhhh
Q 012627 24 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC----AVHISMLLLGRIFLGMGIG 99 (459)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g 99 (459)
+++ .+..+.|++.+++.++..++++++|+++||+|||+++.++.++.+++.+++++ ++|++.++++|+++|++.+
T Consensus 56 ~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~ 134 (451)
T 1pw4_A 56 EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQG 134 (451)
T ss_dssp SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHH
T ss_pred HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhh
Confidence 445 78888999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred hhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCch-hhHHHHhhHHHHHHHHHH-hcccCCChh
Q 012627 100 FGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWG-WRLSLGLATVPATLMFVG-GLFLPETPN 177 (459)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~g-wr~~f~~~~~~~~~~~~~-~~~l~e~p~ 177 (459)
...+...+++.|++|+++|++++++...+.++|.+++|.++.... +..| ||+.|++.+++.++..++ .+++||+|+
T Consensus 135 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~--~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 135 MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM--AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH--HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred hccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 999999999999999999999999999999999999999964433 3456 999999999888776544 566898886
Q ss_pred hHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHh-hhcCCCchHHHHHHHhHHHhhcchhHHHHh
Q 012627 178 SLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLF-KKKNRPQLVIGALGIPAFQQLTGMNSILFY 256 (459)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (459)
....+++.++. .+.+.+ . + ++++.+.+.++.. +.....+...... +..+...........+
T Consensus 213 ~~~~~~~~~~~----------~~~~~~---~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 274 (451)
T 1pw4_A 213 SCGLPPIEEYK----------NDYPDD---Y-N---EKAEQELTAKQIFMQYVLPNKLLWYIA-IANVFVYLLRYGILDW 274 (451)
T ss_dssp TTCCCSCTTTC----------CC--------------------CCTHHHHHHTSSCHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hcCCCChhhhc----------cccccc---c-h---hhhhcccccccchHHHHHcCHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 43221111100 000000 0 0 0001112222221 1111122222222 4455555666778889
Q ss_pred HHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh--CCcceeehhhHHHH-HHHHHHHHHHHHHhcCCCCCCc
Q 012627 257 APVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKF--GRRAFFLEAGTEMI-IYMVIVAITLALEFGEGKPLPK 332 (459)
Q Consensus 257 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 332 (459)
.|.++++ +|+++.+.+.......++.+++.++.+++.||+ +||+.+..+..+.. ++.+++.. .+.
T Consensus 275 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 343 (451)
T 1pw4_A 275 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM-----------NPA 343 (451)
T ss_dssp HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS-----------CCT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH-----------hcc
Confidence 9999987 899999999999999999999999999999999 88886654443333 22222111 011
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 012627 333 GIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLL-FTALIAQAFLAALCHLKFGIFLVFGGLV 411 (459)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (459)
...+.......+.+.+.+... +....+..|.+|++.|+++.|+.+....+ +..+++.+.+.+.+..++...+...+++
T Consensus 344 ~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 422 (451)
T 1pw4_A 344 GNPTVDMICMIVIGFLIYGPV-MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG 422 (451)
T ss_dssp TCHHHHHHHHHHHHHHHTHHH-HHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhchH-HHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 123333444444444444333 33355668999999999999999999999 9999999999999988876666655555
Q ss_pred HHHHHHHHHhc
Q 012627 412 VIMSAFIYFFL 422 (459)
Q Consensus 412 ~~~~~~~~~~~ 422 (459)
.+++.+...+.
T Consensus 423 ~~~~~~~~~~~ 433 (451)
T 1pw4_A 423 SILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554444
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=272.93 Aligned_cols=343 Identities=13% Similarity=0.147 Sum_probs=253.7
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHH---HhhhhHHHHHHHHHHhhhhhh
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILN---ACAVHISMLLLGRIFLGMGIG 99 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g 99 (459)
.+++|.+..+.+++.+.+.+++.++++++|+++||+|||+++..+.++.+++.+++ +++++++.++++|++.|++.+
T Consensus 53 ~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~ 132 (438)
T 3o7q_A 53 QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLG 132 (438)
T ss_dssp HHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHH
Confidence 45678889999999999999999999999999999999999999999999999999 888999999999999999999
Q ss_pred hhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCch------------------------hhHHH
Q 012627 100 FGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWG------------------------WRLSL 155 (459)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~g------------------------wr~~f 155 (459)
...+...+++.|++|+++|++++++.+.+.++|.++++.++.......... ||+.|
T Consensus 133 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 212 (438)
T 3o7q_A 133 CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPY 212 (438)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHH
Confidence 999999999999999999999999999999999999999965444122112 99999
Q ss_pred HhhHHHHHHHHHHhcc--cCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCc
Q 012627 156 GLATVPATLMFVGGLF--LPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQ 233 (459)
Q Consensus 156 ~~~~~~~~~~~~~~~~--l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (459)
++.+++.++..+..++ .||+++...++++ +++.+.+++++++++..+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~ 262 (438)
T 3o7q_A 213 MIIVAIVLLVALLIMLTKFPALQSDNHSDAK------------------------------QGSFSASLSRLARIRHWRW 262 (438)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS------------------------------TTSHHHHHHHHTTCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCccccccccccc------------------------------ccchhhhHHHHHhChHHHH
Confidence 8887776665444333 5665531100000 0001123345555443222
Q ss_pred hHHHHHHHhHHHhhcchhHHHHhHHHH-HHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHH
Q 012627 234 LVIGALGIPAFQQLTGMNSILFYAPVI-FQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMII 311 (459)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 311 (459)
.. +..+...........+.|.+ +++ +|+++.+++.......++.+++.++.+++.||++||+.+..+..+..+
T Consensus 263 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~ 337 (438)
T 3o7q_A 263 AV-----LAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMA 337 (438)
T ss_dssp HH-----HHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 22 33344444556677888988 877 599999999999999999999999999999999999987776666555
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHH
Q 012627 312 YMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQA 391 (459)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~ 391 (459)
+.++.... + . .+ ......+.+++.+... +....+..|.+|++ ++.+.++.. .+.+++.++|.+
T Consensus 338 ~~~~~~~~-----------~-~-~~-~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~ 400 (438)
T 3o7q_A 338 LCLISAFA-----------G-G-HV-GLIALTLCSAFMSIQY-PTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPV 400 (438)
T ss_dssp HHHHHHHC-----------C-H-HH-HHHHHHHHHHHHTTHH-HHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHH
T ss_pred HHHHHHHc-----------C-C-cH-HHHHHHHHHHHHHHHH-HHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHH
Confidence 54443321 1 1 12 2223344444444444 44466667888876 888888776 677999999999
Q ss_pred HHHHHhhhh-HHHHHHHHHHHHHHHHH
Q 012627 392 FLAALCHLK-FGIFLVFGGLVVIMSAF 417 (459)
Q Consensus 392 ~~~~~~~~~-~~~~~~~~~~~~~~~~~ 417 (459)
.+.+.+..+ +...+.+.+++.+...+
T Consensus 401 ~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 401 MGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 999999887 66555555544444443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=262.93 Aligned_cols=394 Identities=17% Similarity=0.105 Sum_probs=251.0
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcc-cccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhh
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRS-RGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFG 101 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 101 (459)
++++|.|..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+..
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 45578889999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHhcCCCcc--chhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhccc-CCC---
Q 012627 102 NQAVPLYLSEMAPAKI--RGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL-PET--- 175 (459)
Q Consensus 102 ~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l-~e~--- 175 (459)
.+...+++.|++|+++ |+.++++++.+.++|..++|.++.... +..|||+.|++.++..++..+..++. |+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~--~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 203 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ--EAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDP 203 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 9999999999999988 777888899999999999999965443 34589999999877766655443322 211
Q ss_pred -hhhHHhcCCHHHHHHHHHH----------------HcCCCcchHHHHHHHHH-----HH-HHhhhcCc-hhHHhhhcCC
Q 012627 176 -PNSLVEQGKLDEARKVLEK----------------VRGTANVDAEFSDLIDA-----SN-AARAIKNP-FRNLFKKKNR 231 (459)
Q Consensus 176 -p~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~-~~~~~~~~~~ 231 (459)
.+....+.+.++.++..+. ..+..+.+......... .. .....+.. .....+++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (491)
T 4aps_A 204 HYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVV 283 (491)
T ss_dssp CCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CT
T ss_pred cccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 1111111223333332222 11111111111000000 00 00000000 0001111111
Q ss_pred CchHHHHHHHhHHHhhcchhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceee-----hh
Q 012627 232 PQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFL-----EA 305 (459)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-----~~ 305 (459)
. . .... +........+.....+.|.+.++ .+.+..+.+.......+..+++.++.+++.||++||+... .+
T Consensus 284 ~-~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~ 360 (491)
T 4aps_A 284 S-Y-IPLF-IAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVG 360 (491)
T ss_dssp T-H-HHHH-HHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHH
T ss_pred H-H-HHHH-HHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHH
Confidence 1 1 1111 22233333334445566777766 6777677888888889999999999999999999998765 44
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHH
Q 012627 306 GTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFT 385 (459)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~ 385 (459)
..+..++..++....... ... .....+.......+.+.+.+... +....+..|.+|++.|+++.|+.+....++.
T Consensus 361 ~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~ 435 (491)
T 4aps_A 361 LMFAGLSFLLMAIPGALY-GTS---GKVSPLWLVGSWALVILGEMLIS-PVGLSVTTKLAPKAFNSQMMSMWFLSSSVGS 435 (491)
T ss_dssp HHHHHHHHTTTHHHHHHC-CCC---TTCCTHHHHHHHHHHHHHHHTTT-THHHHHHHHHTTTTCSSSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCC---CCccHHHHHHHHHHHHHHHHHHh-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 444444444433322110 000 11122333444445555544333 4456677899999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 012627 386 ALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPETK 426 (459)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (459)
.+++.+.+.+.+......+...++++.+.+++.+...++.+
T Consensus 436 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 436 ALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988876654445555555555555555555444433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-33 Score=261.73 Aligned_cols=336 Identities=15% Similarity=0.151 Sum_probs=251.4
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+++|.|+.+.+++.+.+.++..++++++|+++||+|||+++..+.++.+++.++.++++|++.+++.|++.|++.+...
T Consensus 27 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~ 106 (375)
T 2gfp_A 27 ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGG 106 (375)
T ss_dssp HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhh
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHH-HhcccCCChhhHHh
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFV-GGLFLPETPNSLVE 181 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~-~~~~l~e~p~~~~~ 181 (459)
+...+++.|++|+++|++++++.+.+.++|..++|.++... .+..+||+.|++.++..++..+ ..+++||+++...+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (375)
T 2gfp_A 107 VMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLL--DTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP 184 (375)
T ss_dssp HHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHS--SCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCC
T ss_pred hhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcc
Confidence 99999999999999999999999999999999999995544 3446899999999888877766 35568887642100
Q ss_pred cCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHH
Q 012627 182 QGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF 261 (459)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (459)
+ ++.+.++++.++++..+... +..+...........+.|.++
T Consensus 185 --~-------------------------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 226 (375)
T 2gfp_A 185 --R-------------------------------TRLLTSYKTLFGNSGFNCYL-----LMLIGGLAGIAAFEACSGVLM 226 (375)
T ss_dssp --C-------------------------------CCTTTCSTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCSCSS
T ss_pred --c-------------------------------ccHHHHHHHHhcCcchHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 0 01133455566554433222 233344445566677778777
Q ss_pred HH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHH-HHHHHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 012627 262 QS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTE-MIIYMVIVAITLALEFGEGKPLPKGIGIFLV 339 (459)
Q Consensus 262 ~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (459)
++ +|.++.+.+.......++.+++.++.+++.||.+++ ...+... ...+......... .....+...
T Consensus 227 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 295 (375)
T 2gfp_A 227 GAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF---------GVMNVWTLL 295 (375)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH---------HHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh---------ccccHHHHH
Confidence 66 788888899999999999999999999999998762 2222211 1111111111100 001233344
Q ss_pred HHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 012627 340 IVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLV 411 (459)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (459)
....+.+.+.+... +....+..|..| +.|+++.|+.+....++..+++.+.+.+.+..++...+...++.
T Consensus 296 ~~~~l~g~~~~~~~-~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~ 365 (375)
T 2gfp_A 296 VPAALFFFGAGMLF-PLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMG 365 (375)
T ss_dssp HHHHHHHHHHHHTS-STTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-HHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 44555555555444 444666679988 78999999999999999999999999988877766665554433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=231.83 Aligned_cols=143 Identities=14% Similarity=0.153 Sum_probs=127.6
Q ss_pred ccCchhHHHHHHHhHHHHHHHHHHhhhhhccc-ccchhhhHHHHHHHHHHHHHHhhh-hHHHHHHHHHHhhhhhhhhcch
Q 012627 27 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-GRRASIMVGSVSFFIGAILNACAV-HISMLLLGRIFLGMGIGFGNQA 104 (459)
Q Consensus 27 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~ 104 (459)
+.+..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++.+++.+++++++ +++.+++.|++.|++.+...+.
T Consensus 50 ~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (524)
T 2xut_A 50 ELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPL 129 (524)
T ss_dssp STTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchh
Confidence 37888899999999999999999999999999 999999999999999999999999 9999999999999999999999
Q ss_pred hhHHHHhcCCCccchhHHHH---HHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcc
Q 012627 105 VPLYLSEMAPAKIRGAVNQL---FQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF 171 (459)
Q Consensus 105 ~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~ 171 (459)
..+++.|++|+++|+++.+. ...+.++|.+++|.++.. ..+..|||+.|++.++..++..+..++
T Consensus 130 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~--l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 130 VSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPL--LLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTH--HHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877666 999999999999998443 334468999999988887766555433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-27 Score=224.74 Aligned_cols=357 Identities=13% Similarity=0.072 Sum_probs=214.5
Q ss_pred cccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHH---HHHhhhhHH-HHHHHHHHhhhhhh
Q 012627 24 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAI---LNACAVHIS-MLLLGRIFLGMGIG 99 (459)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~---~~~~~~~~~-~l~~~r~l~G~~~g 99 (459)
+++|.|+.+.|++.+.+.+++.++++++|+++||+|||+++.++..+++++.. ...+++... .+...+++.|++.+
T Consensus 36 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 115 (417)
T 2cfq_A 36 DINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLG 115 (417)
T ss_dssp TTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTT
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778889999999999999999999999999999999998887765332 223333221 24556777777666
Q ss_pred hhcchhhHHHHhcCCC--ccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCChh
Q 012627 100 FGNQAVPLYLSEMAPA--KIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPN 177 (459)
Q Consensus 100 ~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~ 177 (459)
...+.....+.++.++ ++|+...+....+.++|..++|.++..... .+||+.|++.++..++..+..++.||+|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 192 (417)
T 2cfq_A 116 FCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT---INNQFVFWLGSGCALILAVLLFFAKTDAP 192 (417)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH---HCSHHHHTTTTTTTTTHHHHSCSSCCCCS
T ss_pred HHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH---hchhHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 6655555555555543 456777888878888899999988654432 36999999888776655555555443331
Q ss_pred hHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhH
Q 012627 178 SLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYA 257 (459)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (459)
. +.+.++.+ ..+.. +....++++.++++..+... +..+.....+.....+.
T Consensus 193 ~---~~~~~~~~-------~~~~~--------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 243 (417)
T 2cfq_A 193 S---SATVANAV-------GANHS--------------AFSLKLALELFRQPKLWFLS-----LYVIGVSCTYDVFDQQF 243 (417)
T ss_dssp C---SSCSSSSS-------SSCCC--------------CCCHHHHHHHTTCHHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred c---cccccccc-------ccccc--------------cccHHHHHHHhcCCchhhHH-----HHHHHHHHHHHHHHHHH
Confidence 1 00000000 00000 00001123344433222211 11122222333344557
Q ss_pred HHHHHH-cCC---CCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCch
Q 012627 258 PVIFQS-LGF---GSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKG 333 (459)
Q Consensus 258 ~~~~~~-~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (459)
|.++++ ++. +....+.......++.+++.++.+++.||+|||+.+..+..+..+..+..... .
T Consensus 244 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~-------------~ 310 (417)
T 2cfq_A 244 ANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-------------T 310 (417)
T ss_dssp HHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-------------C
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-------------c
Confidence 777655 331 23344666777778888999999999999999997765554444433222110 1
Q ss_pred hHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 012627 334 IGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVV-VCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVV 412 (459)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (459)
..+..++...+...+..... +..+.+.+|.+|++.|+++.++. +....+++.++|.+.|.+.+..++...+...+++.
T Consensus 311 ~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~ 389 (417)
T 2cfq_A 311 SALEVVILKTLHMFEVPFLL-VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVA 389 (417)
T ss_dssp SHHHHHHHTTHHHHHHHHHH-HHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHH
Confidence 11222222222222222222 22355678999999999999984 78888999999999999998777665555555544
Q ss_pred HHHHHH-HHhcCCCC
Q 012627 413 IMSAFI-YFFLPETK 426 (459)
Q Consensus 413 ~~~~~~-~~~~~~~~ 426 (459)
+++.+. +...+|++
T Consensus 390 l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 390 LGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHTTSSCCSC
T ss_pred HHHHHHHHhhhcCCC
Confidence 444443 33344433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=9.5e-13 Score=124.39 Aligned_cols=145 Identities=8% Similarity=-0.108 Sum_probs=113.2
Q ss_pred HhHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHH
Q 012627 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 320 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
+..+.............|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+..+..++.++.....
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~ 112 (438)
T 3o7q_A 33 SLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA 112 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc
Confidence 34444444455667778888888999999999999999999999999999999999999999888888777777663321
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHH
Q 012627 321 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAAL 396 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (459)
. ....+..++...+.+.+.+.... ....++.|.+|+++|+.+.++.+....+|..+++.+.+.+.
T Consensus 113 ~----------~~~~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 113 E----------IMNYTLFLVGLFIIAAGLGCLET-AANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp H----------TTCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred c----------cccHHHHHHHHHHHHhhHHHhhh-hHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 02234455555566666554443 34666789999999999999999999999999999999887
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=4.6e-12 Score=120.13 Aligned_cols=147 Identities=18% Similarity=0.155 Sum_probs=125.2
Q ss_pred cccccCchhHHHHHHHhHHHHHHHHHHhhhhhccc--ccchhhhHHHHHHH-HHHHHHHhh--hhHHHHHHHHHHhhhhh
Q 012627 24 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR--GRRASIMVGSVSFF-IGAILNACA--VHISMLLLGRIFLGMGI 98 (459)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~--Grr~~~~~~~~~~~-~~~~~~~~~--~~~~~l~~~r~l~G~~~ 98 (459)
+.+|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+.++.. ++.++..+. .+.+.+.+.-++.|++.
T Consensus 281 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 360 (451)
T 1pw4_A 281 EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLI 360 (451)
T ss_dssp TBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 34677888899999999999999999999999999 99999888877776 666766666 47788888899999999
Q ss_pred hhhcchhhHHHHhcCCCccchhHHHHHHHHHHH-HHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhccc
Q 012627 99 GFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCL-GILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL 172 (459)
Q Consensus 99 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l 172 (459)
+...+....++.|.+|+++|++++++......+ |..++|.+.+.. .+..||+..|++.++..++..++.+++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l--~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 361 YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT--VDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp THHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999998999999999999999999999999999 999999995443 344579999999888887776655443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-12 Score=122.12 Aligned_cols=145 Identities=10% Similarity=0.076 Sum_probs=121.2
Q ss_pred chhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcchhhHHH
Q 012627 30 NQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYL 109 (459)
Q Consensus 30 ~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i 109 (459)
....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668888888889999999999999999999999999998888888888888888888888888888777777788899
Q ss_pred HhcCCCccchhHHHH-HHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hcccCCCh
Q 012627 110 SEMAPAKIRGAVNQL-FQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETP 176 (459)
Q Consensus 110 ~~~~~~~~r~~~~~~-~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p 176 (459)
.|.+|++.|+.+.++ ++....+|..++|.+++... +..|++..|.+.++..++..++ ....||.+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~--~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY--ESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH--HHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999999998 58888899999999955433 3457889999888887777655 44467654
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.8e-12 Score=116.37 Aligned_cols=171 Identities=13% Similarity=0.083 Sum_probs=126.1
Q ss_pred hHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHH
Q 012627 242 PAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLA 321 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 321 (459)
..+.............|.+.+++|.++.+.++......++..++.++.|+++||+|||+.+..+.....++.++.....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~- 86 (375)
T 2gfp_A 8 LVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS- 86 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc-
Confidence 3344444555566667877788999999999999999999999999999999999999999988888777777665542
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 012627 322 LEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKF 401 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (459)
..+..+....+.+.+.+... +....+..|.+|+++|+++.++.+....++..+++.+.+.+.+..++
T Consensus 87 ------------~~~~l~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 153 (375)
T 2gfp_A 87 ------------SLTVLIAASAMQGMGTGVGG-VMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW 153 (375)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred ------------cHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH
Confidence 22334444444555544333 44456668999999999999999999999999999999998887777
Q ss_pred HHHHHHHHHHHHHHHH-HHHhcCCCC
Q 012627 402 GIFLVFGGLVVIMSAF-IYFFLPETK 426 (459)
Q Consensus 402 ~~~~~~~~~~~~~~~~-~~~~~~~~~ 426 (459)
...+...++..+...+ ..+..||++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 154 RACYLFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 7665555444444333 344455543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.9e-12 Score=122.08 Aligned_cols=165 Identities=15% Similarity=0.106 Sum_probs=119.8
Q ss_pred hHHHhhcchhHHHHhHHHHHHH------cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH-hCCcceeehhhHHHHHHHH
Q 012627 242 PAFQQLTGMNSILFYAPVIFQS------LGFGSGAALYSSVITGIALCIAALISMAFVDK-FGRRAFFLEAGTEMIIYMV 314 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~ 314 (459)
..+.....++....+.+.++++ +|.+..+.++......++..++.++.|+++|| +|||+.+..+..+..++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~ 100 (491)
T 4aps_A 21 TEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHI 100 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 3444445556666677777654 89999999999999999999999999999999 8999998877776666665
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCccc--ccccchHHHHHHHHHHHHHHHHH
Q 012627 315 IVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEM--RSAGQSVVVCNNLLFTALIAQAF 392 (459)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~~~~~~~~~~ 392 (459)
+.... +..+..++...+.+.+.+... +....++.|.+|++. |+.+.++.+....+|..+++.+.
T Consensus 101 ~~~~~-------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 166 (491)
T 4aps_A 101 VLALP-------------FGASALFGSIILIIIGTGFLK-PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV 166 (491)
T ss_dssp HHHSC-------------CSTTHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-------------hhHHHHHHHHHHHHHHHHhcc-chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence 54431 112334444445555544443 444666789999988 77788888899999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 012627 393 LAALCHLKFGIFLVFGGLVVIMSAFIYF 420 (459)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (459)
+.+.+..++...+...++..+++.+...
T Consensus 167 ~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 167 GAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999888877766665555554444433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.9e-11 Score=117.02 Aligned_cols=168 Identities=12% Similarity=0.039 Sum_probs=120.3
Q ss_pred hHHHhhcchhHHHHhHHHHHHH-cC------CCCCchhHHHHHHHHHHHHHHHHHHHHHHHh-CCcceeehhhHHHHHHH
Q 012627 242 PAFQQLTGMNSILFYAPVIFQS-LG------FGSGAALYSSVITGIALCIAALISMAFVDKF-GRRAFFLEAGTEMIIYM 313 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~-~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~ 313 (459)
..+.....++....+++.++++ +| +++.+.++......++..++.++.|+++||+ |||+.+..+..+..++.
T Consensus 20 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~ 99 (524)
T 2xut_A 20 SEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGH 99 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3444444556666777777754 88 9999999999999999999999999999999 99998887776666665
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchH---HHHHHHHHHHHHHH
Q 012627 314 VIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSV---VVCNNLLFTALIAQ 390 (459)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~~~~~~~~ 390 (459)
++.... + ...+..++...+.+.+.+... +....+..|.+|++.|++..+. .+....+|..+++.
T Consensus 100 ~~~~~~-----------~-~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~ 166 (524)
T 2xut_A 100 AFLAIF-----------E-HSVQGFYTGLFLIALGSGGIK-PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASL 166 (524)
T ss_dssp HHHHHT-----------S-SCHHHHHHHHHHHHHHHHTTH-HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-----------c-ccHHHHHHHHHHHHHhccccc-hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554432 1 023344444555555555443 4446667899999999876666 88889999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 012627 391 AFLAALCHLKFGIFLVFGGLVVIMSAFIYFFL 422 (459)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (459)
+.+.+.+..++...+.+.+++.+++.+.....
T Consensus 167 ~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 167 SMPLLLKNFGAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp TSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998887777766666555555554444433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=4.4e-10 Score=107.78 Aligned_cols=149 Identities=19% Similarity=0.111 Sum_probs=104.5
Q ss_pred cCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHhhhhhhhhc
Q 012627 28 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA-----VHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 28 ~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+............+...++.++.+++.||+|||+.++.+.....++.+..+.. ++...+...-+..+.......
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (491)
T 4gc0_A 309 ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWG 388 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTT
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHH
Confidence 334445667777788889999999999999999999999988888877766543 122222222222222222344
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhcccc----ccCchhhHHHHhhHHHHHHHHHH-hcccCCCh
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEK----IHPWGWRLSLGLATVPATLMFVG-GLFLPETP 176 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~----~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p 176 (459)
+....+.+|.+|.+.|++++++......+|..+++.+...... ....++...|++.++++++..+. ++++|||.
T Consensus 389 ~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 389 PVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 6677899999999999999999999999998888766322211 11234567788888888777554 56799985
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 459 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 8e-12 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 0.002 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 64.7 bits (156), Expect = 8e-12
Identities = 52/406 (12%), Positives = 107/406 (26%), Gaps = 33/406 (8%)
Query: 29 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAIL----NACAVHI 84
L S + A S F V+ R + G + + I
Sbjct: 57 SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSI 116
Query: 85 SMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTE 144
+++ + G G G + K RG + ++ +G + L+
Sbjct: 117 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 176
Query: 145 KIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAE 204
A + + +TP S G ++
Sbjct: 177 AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQS-----------------CGLPPIEEY 219
Query: 205 FSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ-S 263
+D D N + + +F + P ++ + I IL ++P +
Sbjct: 220 KNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV 279
Query: 264 LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALE 323
F + ++ + A L+ DK R + +TL
Sbjct: 280 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG---------NRGATGVFFMTLVTI 330
Query: 324 FGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLL 383
+ + ++ + + L L EL P + L
Sbjct: 331 ATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL 390
Query: 384 FTALIAQAFLAALCHL--KFGIFLVFGGLVVIMSAFIYFFLPETKQ 427
++ A A + G F+V G ++ + + K+
Sbjct: 391 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 436
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 38.2 bits (87), Expect = 0.002
Identities = 36/404 (8%), Positives = 98/404 (24%), Gaps = 46/404 (11%)
Query: 35 LFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA----CAVHISMLLLG 90
+ +++ L+ ++ G R ++ + + +L+G
Sbjct: 47 IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG 106
Query: 91 RIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWG 150
I G+ +GF A + R + + + + A +
Sbjct: 107 SIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINN 166
Query: 151 WRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLID 210
+ + L + + P+S +
Sbjct: 167 QFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHS-------------------- 206
Query: 211 ASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGA 270
LF++ L + +G+ +
Sbjct: 207 -----AFSLKLALELFRQPKLWFLSLYVIGVSCTYD--------VFDQQFANFFTSFFAT 253
Query: 271 ALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPL 330
+ + G + L++ + + + +++ I+++ + L
Sbjct: 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSAL 313
Query: 331 PKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQ 390
I L + F+L + + F + + V C +
Sbjct: 314 EVVILKTLHMFEVPFLL-------VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMS 366
Query: 391 AFLAALCHLK--FGIFLVFGGLVVIMSAFIYFFLPETKQVPIEE 432
+ G +LV G + + + F L + +
Sbjct: 367 VLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 459 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.95 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.38 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.36 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.1e-36 Score=283.91 Aligned_cols=367 Identities=13% Similarity=0.032 Sum_probs=250.5
Q ss_pred ccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhh----hHHHHHHHHHHhhhhhhh
Q 012627 25 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV----HISMLLLGRIFLGMGIGF 100 (459)
Q Consensus 25 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~ 100 (459)
++|+|.+++|++.+++.+++.++++++|+++||+|||+++..+.++.+++.+++++++ +++.+++.|++.|++.|.
T Consensus 53 ~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 132 (447)
T d1pw4a_ 53 EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGM 132 (447)
T ss_dssp SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHH
T ss_pred HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhh
Confidence 3588999999999999999999999999999999999999999999999999988764 778999999999999999
Q ss_pred hcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hcccCCChhhH
Q 012627 101 GNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSL 179 (459)
Q Consensus 101 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p~~~ 179 (459)
..+...+++.|++|+++|++++++.+.+.++|.++++.++...... ..+||+.|++.+++.++..++ .++++|+|+..
T Consensus 133 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (447)
T d1pw4a_ 133 GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW-FNDWHAALYMPAFCAILVALFAFAMMRDTPQSC 211 (447)
T ss_dssp THHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH-TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT
T ss_pred hhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhh-hhcccccchhhhhhHHHHHHHHHHhcccchhhc
Confidence 9999999999999999999999999999999999999885443322 236999999988888776555 45577766532
Q ss_pred HhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHH
Q 012627 180 VEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPV 259 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (459)
......+..+ +.+ ++ ..++ .+.+...++.......+...+.......++.....+....+.|.
T Consensus 212 ~~~~~~~~~~------------~~~-~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (447)
T d1pw4a_ 212 GLPPIEEYKN------------DYP-DD---YNEK-AEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPT 274 (447)
T ss_dssp CCCSCTTTCC------------C------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhh------------hcc-cc---hhhc-cccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhh
Confidence 2111111000 000 00 0000 00011111111111122222222224445555566677788888
Q ss_pred HHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHH
Q 012627 260 IFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKGIGIFL 338 (459)
Q Consensus 260 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (459)
++++ .+++..+.+.......+..+++.++.+++.||++|++.................... . ......+..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~ 346 (447)
T d1pw4a_ 275 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW-----M---NPAGNPTVD 346 (447)
T ss_dssp HBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT-----S---CCTTCHHHH
T ss_pred hcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHH-----h---cccccHHHH
Confidence 8865 789999999999999999999999999999999988754433332222222221111 0 111223333
Q ss_pred HHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 012627 339 VIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLF-TALIAQAFLAALCHLKFGIFLVFGGLVVIMSAF 417 (459)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (459)
.+...+.+++.... .+....+..|.+|++.|+++.|+.+..++++ ..+++.+.+.+.+..|+...+.+.+.+.+.+.+
T Consensus 347 ~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 425 (447)
T d1pw4a_ 347 MICMIVIGFLIYGP-VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI 425 (447)
T ss_dssp HHHHHHHHHHHTHH-HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 34444444443322 3344566789999999999999998888875 456788889999988866555444444444443
Q ss_pred H
Q 012627 418 I 418 (459)
Q Consensus 418 ~ 418 (459)
+
T Consensus 426 ~ 426 (447)
T d1pw4a_ 426 L 426 (447)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=7e-28 Score=224.18 Aligned_cols=362 Identities=12% Similarity=0.059 Sum_probs=225.2
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHH----HHHHHHHhhhhh
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISM----LLLGRIFLGMGI 98 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~r~l~G~~~ 98 (459)
.|++|+|+.++|++.+++.+++.++++++|+++||+|||++++++..+..++..+..+.++... .++.+.+.+.+.
T Consensus 35 ~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (417)
T d1pv7a_ 35 HDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYL 114 (417)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTG
T ss_pred HHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc
Confidence 4556788999999999999999999999999999999999999999999999988888766544 455666666666
Q ss_pred hhhcchhhHHHHhcCCC--ccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHH-HHHhcccCCC
Q 012627 99 GFGNQAVPLYLSEMAPA--KIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLM-FVGGLFLPET 175 (459)
Q Consensus 99 g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~-~~~~~~l~e~ 175 (459)
+...........+..++ +++.+..+........+..+++.++...... +|+..+........+. .+..+..+|+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T d1pv7a_ 115 GFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI---NNQFVFWLGSGCALILAVLLFFAKTDA 191 (417)
T ss_dssp GGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHSSCCCS
T ss_pred cccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc---cccccccchhhHHHHHHHHHHHHhccc
Confidence 66655555555444433 3456677788888888888888885544432 4666665555554444 4455667776
Q ss_pred hhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHH
Q 012627 176 PNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILF 255 (459)
Q Consensus 176 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (459)
|+.. ++.++. ++++.+.......+....+....... ..............
T Consensus 192 ~~~~---~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 241 (417)
T d1pv7a_ 192 PSSA---TVANAV-------------------------GANHSAFSLKLALELFRQPKLWFLSL--YVIGVSCTYDVFDQ 241 (417)
T ss_dssp CSSS---CSSHHH-------------------------HSCCCCCCHHHHHHHTTSSHHHHHHH--HHHHHHHHHHHHHH
T ss_pred ccch---hhhhhh-------------------------hhhcccccccccccccccccccchhh--hhHHHHHHHHhhhc
Confidence 6321 111100 00000111111111111111111111 11111111122222
Q ss_pred hHHHHHHH----cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 012627 256 YAPVIFQS----LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLP 331 (459)
Q Consensus 256 ~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (459)
..+.+... .+.+....+.......++..++..+.+++.||.++|+.+..+..+..++.+.....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------ 309 (417)
T d1pv7a_ 242 QFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA------------ 309 (417)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC------------
T ss_pred cccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc------------
Confidence 22222222 12233445666777788888999999999999999998877666665555544331
Q ss_pred chhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHH
Q 012627 332 KGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVV-VCNNLLFTALIAQAFLAALCHLKFGIFL-VFGG 409 (459)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 409 (459)
+..+...+...+.+.+.+... +....+..|.+|++.|+++.|+. +....++..+++.+.|.+.|+.|+...+ +.++
T Consensus 310 -~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~ 387 (417)
T d1pv7a_ 310 -TSALEVVILKTLHMFEVPFLL-VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGL 387 (417)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred -cccchhhHHHHHHHHHHHHHH-HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
Confidence 223444445555555555444 34456668999999999999975 4567789999999999999998866544 4444
Q ss_pred HHHHHHHHHHHhcCCCCCCCHH
Q 012627 410 LVVIMSAFIYFFLPETKQVPIE 431 (459)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~ 431 (459)
++.+.+++..+.++++++.+..
T Consensus 388 ~~~~~~~~~~~~l~~~~~~~~~ 409 (417)
T d1pv7a_ 388 VALGFTLISVFTLSGPGPLSLL 409 (417)
T ss_dssp HHHHHHHHHHHHSCCSSCTTHH
T ss_pred HHHHHHHHHHHhhcCCCccchh
Confidence 5555555556666666555543
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=1.6e-13 Score=127.66 Aligned_cols=162 Identities=14% Similarity=0.157 Sum_probs=114.5
Q ss_pred HHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 012627 253 ILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPK 332 (459)
Q Consensus 253 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (459)
+....|. +++.|++..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.++........
T Consensus 44 ~~~~~p~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--------- 113 (447)
T d1pw4a_ 44 FALAMPY-LVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT--------- 113 (447)
T ss_dssp HHHHHHH-TTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH---------
T ss_pred HHHHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhh---------
Confidence 4444554 456899999999999999999999999999999999999999888887777776665532211
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhh-hHHH-HHHHHHH
Q 012627 333 GIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHL-KFGI-FLVFGGL 410 (459)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~ 410 (459)
...+..++...+.+.+.+.... ....++.|.+|+++|+++.++.+....+|..+++.+.+...+.. ++.. ++....+
T Consensus 114 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~ 192 (447)
T d1pw4a_ 114 SSIAVMFVLLFLCGWFQGMGWP-PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFC 192 (447)
T ss_dssp SSSSHHHHHHHHHHHHHHHTHH-HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhhhhh-HHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhh
Confidence 1123344444455555444443 33556689999999999999999999999999998888776654 3333 3344444
Q ss_pred HHHHHHHHHHhcCCC
Q 012627 411 VVIMSAFIYFFLPET 425 (459)
Q Consensus 411 ~~~~~~~~~~~~~~~ 425 (459)
..+.+++.+...++.
T Consensus 193 ~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 193 AILVALFAFAMMRDT 207 (447)
T ss_dssp HHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHhcccc
Confidence 445555555555544
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=4.7e-13 Score=122.73 Aligned_cols=148 Identities=9% Similarity=0.062 Sum_probs=128.1
Q ss_pred ccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcch
Q 012627 25 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQA 104 (459)
Q Consensus 25 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 104 (459)
..+.+....+...+...++..++..+.+++.||+|||+++..+.++.+++.++..+.++.+.+.+..++.|++.+...+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 332 (417)
T d1pv7a_ 253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVG 332 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 34456777788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhcCCCccchhHHHHH-HHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHh-cccCC
Q 012627 105 VPLYLSEMAPAKIRGAVNQLF-QLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPE 174 (459)
Q Consensus 105 ~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~l~e 174 (459)
..+++.|.+|+++|+++.++. +....+|..++|.+++. ..+..||+..|++.+++.++..++. +.+++
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~--l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGN--MYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHH--HHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999985 56778999999998443 3445689999999888887775554 44543
|