Citrus Sinensis ID: 012646
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 459 | 2.2.26 [Sep-21-2011] | |||||||
| O04249 | 513 | Sugar transport protein 7 | yes | no | 0.969 | 0.867 | 0.812 | 0.0 | |
| Q10710 | 522 | Sugar carrier protein A O | N/A | no | 0.982 | 0.863 | 0.840 | 0.0 | |
| Q94AZ2 | 526 | Sugar transport protein 1 | no | no | 0.980 | 0.855 | 0.604 | 1e-164 | |
| Q8GW61 | 504 | Sugar transport protein 1 | no | no | 0.969 | 0.882 | 0.599 | 1e-159 | |
| Q07423 | 510 | Hexose carrier protein HE | N/A | no | 0.982 | 0.884 | 0.567 | 1e-149 | |
| Q9LT15 | 514 | Sugar transport protein 1 | no | no | 0.958 | 0.856 | 0.553 | 1e-149 | |
| Q9SX48 | 517 | Sugar transport protein 9 | no | no | 0.958 | 0.851 | 0.560 | 1e-148 | |
| P23586 | 522 | Sugar transport protein 1 | no | no | 0.973 | 0.856 | 0.566 | 1e-144 | |
| Q41144 | 523 | Sugar carrier protein C O | N/A | no | 0.965 | 0.847 | 0.562 | 1e-143 | |
| Q9FMX3 | 514 | Sugar transport protein 1 | no | no | 0.952 | 0.850 | 0.579 | 1e-141 |
| >sp|O04249|STP7_ARATH Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/447 (81%), Positives = 408/447 (91%), Gaps = 2/447 (0%)
Query: 6 QKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIIC 65
++FFH VY KKK AHE+NYCKYDNQGLAAFTSSLYLAGLV++ VASP+TR+YGRRASI+C
Sbjct: 59 EEFFHTVYEKKKQAHESNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVC 118
Query: 66 GGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQ 125
GGISFL+G+ LNA A NLAMLL GRI+LGVGIGFGNQAVPLYLSE+APTHLRGGLNMMFQ
Sbjct: 119 GGISFLIGSGLNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQ 178
Query: 126 LATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKV 185
LATT+GIFTANM+NYGTQ+L+ WGWRLSLGLAA PAL+MT+GG LPETPNSL+ERG
Sbjct: 179 LATTIGIFTANMVNYGTQQLKPWGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLTE 238
Query: 186 EGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQIL 245
GRRVL K+RGT+ VNAE QDMVDASELANSIKHPFRNIL++R+RPQLVMAI MPMFQIL
Sbjct: 239 RGRRVLVKLRGTENVNAELQDMVDASELANSIKHPFRNILQKRHRPQLVMAICMPMFQIL 298
Query: 246 TGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGI 305
TGINSILFYAPVLFQ+MGF G+ASLYSSA+TGAVL ST ISI VD+LGRRALLI+GGI
Sbjct: 299 TGINSILFYAPVLFQTMGFGGNASLYSSALTGAVLVLSTFISIGLVDRLGRRALLITGGI 358
Query: 306 QMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPL 365
QMI CQVIV++ILG+KFG NQELSK +S++VV+ ICLFV+AFGWSWGPLGWT+PSEIFPL
Sbjct: 359 QMIICQVIVAVILGVKFGDNQELSKGYSVIVVIFICLFVVAFGWSWGPLGWTIPSEIFPL 418
Query: 366 ETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPETKG 425
ETRSAGQSITVAVNL FTF+IAQ FL LLC+FKFGIFLFFAGWVT+MTIFVYF LPETKG
Sbjct: 419 ETRSAGQSITVAVNLLFTFIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVYFLLPETKG 478
Query: 426 VPIEEMILLWRKHWFWKRIMPVVEETN 452
VPIEEM LLW KHWFWK+++P + TN
Sbjct: 479 VPIEEMTLLWSKHWFWKKVLP--DATN 503
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q10710|STA_RICCO Sugar carrier protein A OS=Ricinus communis GN=STA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/451 (84%), Positives = 414/451 (91%)
Query: 6 QKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIIC 65
+KFF VYLKKKHAHENNYCKYD+Q LAAFTSSLYLAGL AS VA P+TR YGRRASII
Sbjct: 59 EKFFRSVYLKKKHAHENNYCKYDDQRLAAFTSSLYLAGLAASLVAGPITRIYGRRASIIS 118
Query: 66 GGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQ 125
GGISFL+GAALNA A NLAMLL GRI+LGVGIGFGNQAVPLYLSEMAPTHLRGGLN+MFQ
Sbjct: 119 GGISFLIGAALNATAINLAMLLLGRIMLGVGIGFGNQAVPLYLSEMAPTHLRGGLNIMFQ 178
Query: 126 LATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKV 185
LATT GIFTANM+NYGT KLE+WGWRLSLGLAAAPAL+MT+GG+LLPETPNSLIE+G
Sbjct: 179 LATTSGIFTANMVNYGTHKLESWGWRLSLGLAAAPALLMTIGGLLLPETPNSLIEQGLHE 238
Query: 186 EGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQIL 245
+GR VLEKIRGTK V+AE+QDM+DASELANSIKHPFRNILE+RNRPQLVMAIFMP FQIL
Sbjct: 239 KGRNVLEKIRGTKHVDAEFQDMLDASELANSIKHPFRNILEKRNRPQLVMAIFMPTFQIL 298
Query: 246 TGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGI 305
TGIN ILFYAP LFQSMGF G+A+LYSSA+TGAVL SST ISIATVD+LGRR LLISGGI
Sbjct: 299 TGINIILFYAPPLFQSMGFGGNAALYSSAVTGAVLCSSTFISIATVDRLGRRFLLISGGI 358
Query: 306 QMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPL 365
QMITCQVIV+IILG+KFG NQ+LSKSFS+LVV++ICLFVLAFGWSWGPLGWTVPSEIFPL
Sbjct: 359 QMITCQVIVAIILGVKFGDNQQLSKSFSVLVVIMICLFVLAFGWSWGPLGWTVPSEIFPL 418
Query: 366 ETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPETKG 425
ETRSAGQSITVAVNLFFTFVIAQ F +LLC+FKFGIFLFFAGWVT+MT FVY FLPETKG
Sbjct: 419 ETRSAGQSITVAVNLFFTFVIAQSFPSLLCAFKFGIFLFFAGWVTVMTAFVYIFLPETKG 478
Query: 426 VPIEEMILLWRKHWFWKRIMPVVEETNNQQS 456
VPIEEMI LWRKHWFWK+I+P E ++ +
Sbjct: 479 VPIEEMIFLWRKHWFWKKIVPGQPEVDDSRE 509
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Ricinus communis (taxid: 3988) |
| >sp|Q94AZ2|STP13_ARATH Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 578 bits (1490), Expect = e-164, Method: Compositional matrix adjust.
Identities = 277/458 (60%), Positives = 356/458 (77%), Gaps = 8/458 (1%)
Query: 6 QKFFHDVYLK--KKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASI 63
+KFF VY K ++NYCKYDNQGL FTSSLYLAGL A+F AS TR GRR ++
Sbjct: 55 EKFFPVVYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTM 114
Query: 64 ICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMM 123
+ G+ F++G ALNA A +LAML+ GRILLG G+GF NQAVPL+LSE+APT +RGGLN++
Sbjct: 115 LIAGVFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNIL 174
Query: 124 FQLATTLGIFTANMINYGTQKLET-WGWRLSLGLAAAPALMMTVGGILLPETPNSLIERG 182
FQL T+GI AN++NYGT K++ WGWRLSLGLA PAL++TVG +L+ ETPNSL+ERG
Sbjct: 175 FQLNVTIGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERG 234
Query: 183 KKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMF 242
+ EG+ VL +IRGT V E+ D+++AS LA +KHPFRN+L+RRNRPQLV+A+ + +F
Sbjct: 235 RLDEGKAVLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIF 294
Query: 243 QILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLIS 302
Q TGIN+I+FYAPVLF ++GF DASLYS+ +TGAV STL+SI +VDK+GRR LL+
Sbjct: 295 QQCTGINAIMFYAPVLFSTLGFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLE 354
Query: 303 GGIQMITCQVIVSIILGLKF-GPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSE 361
G+QM QV+++IILG+K + LSK F+ILVVV+IC +V AF WSWGPLGW +PSE
Sbjct: 355 AGVQMFFSQVVIAIILGVKVTDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLGWLIPSE 414
Query: 362 IFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLP 421
FPLETRSAGQS+TV VNL FTF+IAQ FL++LC FKFGIF+FF+ WV IM++FV F LP
Sbjct: 415 TFPLETRSAGQSVTVCVNLLFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFVMFLLP 474
Query: 422 ETKGVPIEEMI-LLWRKHWFWKRIMPVVEETNNQQSIS 458
ETK +PIEEM +W+KHWFW R M ++ N+ + ++
Sbjct: 475 ETKNIPIEEMTERVWKKHWFWARFM---DDHNDHEFVN 509
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GW61|STP14_ARATH Sugar transport protein 14 OS=Arabidopsis thaliana GN=STP14 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 562 bits (1449), Expect = e-159, Method: Compositional matrix adjust.
Identities = 268/447 (59%), Positives = 344/447 (76%), Gaps = 2/447 (0%)
Query: 6 QKFFHDVYLKKK-HAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASII 64
++FF +Y +K+ H +E +YCKYDNQ L FTSSLY AGL+++F AS VTR YGRR SI+
Sbjct: 58 KEFFPGIYKRKQMHLNETDYCKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGRRGSIL 117
Query: 65 CGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMF 124
G +SF LG +NAAA N+ ML+ GRI LG+GIGFGNQAVPLYLSEMAP +RG +N +F
Sbjct: 118 VGSVSFFLGGVINAAAKNILMLILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGTVNQLF 177
Query: 125 QLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKK 184
QL T +GI AN+INY T+++ WGWRLSLGLA PA++M +GG++LPETPNSL+E+GK
Sbjct: 178 QLTTCIGILVANLINYKTEQIHPWGWRLSLGLATVPAILMFLGGLVLPETPNSLVEQGKL 237
Query: 185 VEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVM-AIFMPMFQ 243
+ + VL K+RGT + AE+QD+V+AS+ A ++K+PFRN+L RRNRPQLV+ AI +P FQ
Sbjct: 238 EKAKAVLIKVRGTNNIEAEFQDLVEASDAARAVKNPFRNLLARRNRPQLVIGAIGLPAFQ 297
Query: 244 ILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISG 303
LTG+NSILFYAPV+FQS+GF G ASL SS +T A L + ++S+ + DK GRR LL+
Sbjct: 298 QLTGMNSILFYAPVMFQSLGFGGSASLISSTITNAALVVAAIMSMYSADKFGRRFLLLEA 357
Query: 304 GIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIF 363
++M V+V + L LKFG +EL KS +++VV+ICLFVLA+G SWGP+GW VPSE+F
Sbjct: 358 SVEMFCYMVVVGVTLALKFGEGKELPKSLGLILVVLICLFVLAYGRSWGPMGWLVPSELF 417
Query: 364 PLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPET 423
PLETRSAGQS+ V VNLFFT +IAQ FL LC K+GIFL FAG + M FVYF LPET
Sbjct: 418 PLETRSAGQSVVVCVNLFFTALIAQCFLVSLCHLKYGIFLLFAGLILGMGSFVYFLLPET 477
Query: 424 KGVPIEEMILLWRKHWFWKRIMPVVEE 450
K VPIEE+ LLWR+HW WK+ + V+E
Sbjct: 478 KQVPIEEVYLLWRQHWLWKKYVEDVDE 504
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q07423|HEX6_RICCO Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 529 bits (1363), Expect = e-149, Method: Compositional matrix adjust.
Identities = 259/456 (56%), Positives = 340/456 (74%), Gaps = 5/456 (1%)
Query: 6 QKFFHDVYLKKKHAHE-NNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASII 64
+KFF DVY K K E +NYCK+D+Q L +FTSSLY+AGLVASF AS VTR +GR+ SI+
Sbjct: 54 KKFFPDVYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSIL 113
Query: 65 CGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMF 124
GG FL AAL AA N+ ML+ GR+LLGVG+GF NQAVPLYLSEMAP RG +N F
Sbjct: 114 LGGXVFLAXAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGF 173
Query: 125 QLATTLGIFTANMINYGTQKLET-WGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGK 183
Q + +G +AN+INYGT+K+E WGWR+SL +AA PA ++T G + LPETPNSLI+R
Sbjct: 174 QFSVGIGALSANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGALFLPETPNSLIQRSN 233
Query: 184 KVE-GRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMF 242
E + +L+++RGT +V AE D++ AS ++ +I+HPF+NI+ R+ RPQLVMA+ +P F
Sbjct: 234 DHERAKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQLVMAVAIPFF 293
Query: 243 QILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLIS 302
Q +TGIN I FYAP+LF+++G + ASL SS +TG V ++ST IS+ VDKLGRRAL I
Sbjct: 294 QQVTGINVIAFYAPILFRTIGLEESASLLSSIVTGLVGSASTFISMLIVDKLGRRALFIF 353
Query: 303 GGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEI 362
GG+QM Q++V I+ + G + + K ++ +V+++IC++V FGWSWGPLGW VPSEI
Sbjct: 354 GGVQMFVAQIMVGSIMAAELGDHGGIGKGYAYIVLILICIYVAGFGWSWGPLGWLVPSEI 413
Query: 363 FPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPE 422
FPLE RSAGQSI VAV+ FTFV+AQ FL++LC FK GIF FF GWV +MT FV+F LPE
Sbjct: 414 FPLEIRSAGQSIVVAVSFLFTFVVAQTFLSMLCHFKSGIFFFFGGWVVVMTAFVHFLLPE 473
Query: 423 TKGVPIEEMILLWRKHWFWKRIM--PVVEETNNQQS 456
TK VPIE+M ++WR HWFWK+I+ EE N ++
Sbjct: 474 TKKVPIEKMDIVWRDHWFWKKIIGEEAAEENNKMEA 509
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Active uptake of hexoses. Probable glucose/hydrogen symport. Ricinus communis (taxid: 3988) |
| >sp|Q9LT15|STP10_ARATH Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 527 bits (1357), Expect = e-149, Method: Compositional matrix adjust.
Identities = 245/443 (55%), Positives = 330/443 (74%), Gaps = 3/443 (0%)
Query: 7 KFFHDVYLK-KKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIIC 65
KFF V + KK H+ YCK+DNQ L FTSSLYLA LVASF+AS +TR +GR+ S+
Sbjct: 58 KFFPQVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFI 117
Query: 66 GGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQ 125
GG++FL+GA NA A N++ML+ GR+LLGVG+GF NQ+ P+YLSEMAP +RG LN+ FQ
Sbjct: 118 GGLAFLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQ 177
Query: 126 LATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKV 185
+A T+GI AN+INYGT K+ GWR+SLGLAA PA++M +G +LP+TPNS++ERGK
Sbjct: 178 MAITIGILVANLINYGTSKMAQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKNE 237
Query: 186 EGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQIL 245
E +++L+KIRG V+ E+QD++DA E A +++P++NI+E + RP L+ +P FQ +
Sbjct: 238 EAKQMLKKIRGADNVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCSAIPFFQQI 297
Query: 246 TGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGI 305
TGIN I+FYAPVLF+++GF DA+L S+ +TG V ST +SI VD+ GRR L + GGI
Sbjct: 298 TGINVIMFYAPVLFKTLGFGDDAALMSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGGI 357
Query: 306 QMITCQVIVSIILGLKFGPN--QELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIF 363
QM CQ++V +G +FG + L+ + + ++ IC++V F WSWGPLGW VPSEI
Sbjct: 358 QMFICQLLVGSFIGARFGTSGTGTLTPATADWILAFICVYVAGFAWSWGPLGWLVPSEIC 417
Query: 364 PLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPET 423
PLE R AGQ+I V+VN+FFTF+I Q FLT+LC KFG+F FFA V IMT+F+YF LPET
Sbjct: 418 PLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFASMVAIMTVFIYFLLPET 477
Query: 424 KGVPIEEMILLWRKHWFWKRIMP 446
KGVPIEEM +W++HWFWK+ +P
Sbjct: 478 KGVPIEEMGRVWKQHWFWKKYIP 500
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 524 bits (1350), Expect = e-148, Method: Compositional matrix adjust.
Identities = 249/444 (56%), Positives = 327/444 (73%), Gaps = 4/444 (0%)
Query: 7 KFFHDVYLKKKHAH-ENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIIC 65
KFF +V + A E YCK+DNQ L FTSSLYLA L +SFVAS VTR YGR+ S+
Sbjct: 58 KFFPEVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFV 117
Query: 66 GGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQ 125
GG++FL+G+ NA A N+AML+ GR+LLGVG+GF NQ+ P+YLSEMAP +RG LN+ FQ
Sbjct: 118 GGVAFLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQ 177
Query: 126 LATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKV 185
+A T+GI AN+INYGT ++ GWR+SLGLAA PA++M +G +LP+TPNS++ERGK
Sbjct: 178 MAITIGILIANLINYGTSQMAKNGWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLERGKYE 237
Query: 186 EGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILER-RNRPQLVMAIFMPMFQI 244
+ R +L+KIRG V+ E+QD+ DA E A + +P++NI ++ + RP LV +P FQ
Sbjct: 238 QAREMLQKIRGADNVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFCSAIPFFQQ 297
Query: 245 LTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGG 304
+TGIN I+FYAPVLF+++GF DASL S+ +TGAV STL+SI VD+ GRR L + GG
Sbjct: 298 ITGINVIMFYAPVLFKTLGFADDASLISAVITGAVNVVSTLVSIYAVDRYGRRILFLEGG 357
Query: 305 IQMITCQVIVSIILGLKFGPNQE--LSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEI 362
IQMI Q++V ++G+KFG L+ + + ++ ICL+V F WSWGPLGW VPSEI
Sbjct: 358 IQMIVSQIVVGTLIGMKFGTTGSGTLTPATADWILAFICLYVAGFAWSWGPLGWLVPSEI 417
Query: 363 FPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPE 422
PLE R AGQ+I V+VN+FFTF+I Q FLT+LC KFG+F FF G V +MT+F+YF LPE
Sbjct: 418 CPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFGGMVAVMTVFIYFLLPE 477
Query: 423 TKGVPIEEMILLWRKHWFWKRIMP 446
TKGVPIEEM +W++H FWKR MP
Sbjct: 478 TKGVPIEEMGRVWKQHPFWKRYMP 501
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose. Arabidopsis thaliana (taxid: 3702) |
| >sp|P23586|STP1_ARATH Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 511 bits (1315), Expect = e-144, Method: Compositional matrix adjust.
Identities = 256/452 (56%), Positives = 333/452 (73%), Gaps = 5/452 (1%)
Query: 6 QKFFHDVYLKKKH-AHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASII 64
++FF VY K++ A N YC+YD+ L FTSSLYLA L++S VAS VTR +GRR S++
Sbjct: 55 KRFFPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSML 114
Query: 65 CGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMF 124
GGI F GA +N A ++ ML+ GRILLG GIGF NQAVPLYLSEMAP RG LN+ F
Sbjct: 115 FGGILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGF 174
Query: 125 QLATTLGIFTANMINYGTQKLET-WGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGK 183
QL+ T+GI A ++NY K++ WGWRLSLG A PAL++T+G ++LP+TPNS+IERG+
Sbjct: 175 QLSITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQ 234
Query: 184 KVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQ 243
E + L +IRG +V+ E+ D+V AS+ + SI+HP+RN+L R+ RP L MA+ +P FQ
Sbjct: 235 HEEAKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQ 294
Query: 244 ILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISG 303
LTGIN I+FYAPVLF ++GF DASL S+ +TG+V ++TL+SI VD+ GRR L + G
Sbjct: 295 QLTGINVIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEG 354
Query: 304 GIQMITCQVIVSIILGLKFGPN---QELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPS 360
G QM+ CQ +V+ +G KFG + EL K ++I+VV IC++V F WSWGPLGW VPS
Sbjct: 355 GTQMLICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPS 414
Query: 361 EIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFL 420
EIFPLE RSA QSITV+VN+ FTF+IAQIFLT+LC KFG+FL FA +V +M+IFVY FL
Sbjct: 415 EIFPLEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYIFL 474
Query: 421 PETKGVPIEEMILLWRKHWFWKRIMPVVEETN 452
PETKG+PIEEM +WR HW+W R + E N
Sbjct: 475 PETKGIPIEEMGQVWRSHWYWSRFVEDGEYGN 506
|
Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q41144|STC_RICCO Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 509 bits (1312), Expect = e-143, Method: Compositional matrix adjust.
Identities = 253/450 (56%), Positives = 339/450 (75%), Gaps = 7/450 (1%)
Query: 6 QKFFHDVYLKKK-HAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASII 64
+KFF VY KKK N YC+YD+Q L FTSSLYLA L+AS VAS +TR +GR+ S++
Sbjct: 57 KKFFPSVYRKKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITRKFGRKLSML 116
Query: 65 CGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMF 124
GG+ F GA +N AA + ML+ GRILLG GIGF NQ+VPLYLSEMAP RG LN+ F
Sbjct: 117 FGGVLFCAGAIINGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGF 176
Query: 125 QLATTLGIFTANMINYGTQKLET-WGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGK 183
QL+ T+GI AN++NY K++ WGWRLSLG A PAL++TVG ++LP+TPNS+IERG+
Sbjct: 177 QLSITIGILVANVLNYFFAKIKGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGQ 236
Query: 184 KVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQ 243
E R L+++RG ++V+ E+ D+V ASE + ++HP+RN+L+R+ RP L MAI +P FQ
Sbjct: 237 HEEARAHLKRVRGVEDVDEEFTDLVHASEDSKKVEHPWRNLLQRKYRPHLSMAIAIPFFQ 296
Query: 244 ILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISG 303
LTGIN I+FYAPVLF ++GF DA+L S+ +TG V +T++SI VDK GRR L + G
Sbjct: 297 QLTGINVIMFYAPVLFDTIGFGSDAALMSAVITGLVNVFATMVSIYGVDKWGRRFLFLEG 356
Query: 304 GIQMITCQVIVSIILGLKFGPN---QELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPS 360
G+QM+ CQ IV+ +G KFG + +L + ++++VV+ IC++V F WSWGPLGW VPS
Sbjct: 357 GVQMLICQAIVAACIGAKFGVDGAPGDLPQWYAVVVVLFICIYVSGFAWSWGPLGWLVPS 416
Query: 361 EIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFL 420
EIFPLE RSA QS+ V+VN+FFTFV+AQ+FL +LC KFG+F+FF+ +V IM+IFVY+FL
Sbjct: 417 EIFPLEIRSAAQSVNVSVNMFFTFVVAQVFLIMLCHLKFGLFIFFSFFVLIMSIFVYYFL 476
Query: 421 PETKGVPIEEMILLWRKHWFWKRIMPVVEE 450
PETKG+PIEEM +W++HW+W R VV+E
Sbjct: 477 PETKGIPIEEMGQVWKQHWYWSRY--VVDE 504
|
Ricinus communis (taxid: 3988) |
| >sp|Q9FMX3|STP11_ARATH Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 503 bits (1296), Expect = e-141, Method: Compositional matrix adjust.
Identities = 256/442 (57%), Positives = 324/442 (73%), Gaps = 5/442 (1%)
Query: 7 KFFHDVY--LKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASII 64
KFF DV ++ K E YCKYDN+ L FTSSLYLA L ASF+AS +TR +GR+ S++
Sbjct: 57 KFFPDVLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMV 116
Query: 65 CGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMF 124
G ++FL GA LN A NL ML+ GR+ LGVG+GF NQ+VPLYLSEMAP +RG LN+ F
Sbjct: 117 IGSLAFLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGF 176
Query: 125 QLATTLGIFTANMINYGTQKLETW-GWRLSLGLAAAPALMMTVGGILLPETPNSLIERGK 183
QLA T+GI AN++NY T KL+ GWRLSLGLA PA+MM VG LP+TPNS++ERG
Sbjct: 177 QLAITIGILAANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGN 236
Query: 184 KVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQ 243
K + + +L+KIRGT EV E+ ++ +A E A +KHP+ NI++ R RPQL F+P FQ
Sbjct: 237 KEKAKEMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTFIPFFQ 296
Query: 244 ILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISG 303
LTGIN I+FYAPVLF+++GF DASL S+ +TG V ST++SI +VDK GRRAL + G
Sbjct: 297 QLTGINVIMFYAPVLFKTIGFGNDASLISAVITGLVNVLSTIVSIYSVDKFGRRALFLQG 356
Query: 304 GIQMITCQVIVSIILGLKFGPNQE--LSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSE 361
G QMI Q+ V ++G KFG N E LS + +++ +ICL+V F WSWGPLGW VPSE
Sbjct: 357 GFQMIVTQIAVGSMIGWKFGFNGEGNLSGVDADIILALICLYVAGFAWSWGPLGWLVPSE 416
Query: 362 IFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLP 421
I PLE RSAGQS+ V+VN+FFTF I Q FLT+LC KFG+F FFAG V IMTIF+YF LP
Sbjct: 417 ICPLEIRSAGQSLNVSVNMFFTFFIGQFFLTMLCHMKFGLFYFFAGMVLIMTIFIYFLLP 476
Query: 422 ETKGVPIEEMILLWRKHWFWKR 443
ETKGVPIEEM +W++H +W +
Sbjct: 477 ETKGVPIEEMGKVWKEHRYWGK 498
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, galactose, mannose, xylose and 3-O-methylglucose, but not fructose and ribose. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 459 | ||||||
| 449457997 | 512 | PREDICTED: sugar transport protein 7-lik | 0.978 | 0.876 | 0.824 | 0.0 | |
| 297809951 | 515 | hypothetical protein ARALYDRAFT_327595 [ | 0.986 | 0.879 | 0.807 | 0.0 | |
| 15235215 | 513 | sugar transport protein 7 [Arabidopsis t | 0.969 | 0.867 | 0.812 | 0.0 | |
| 224144018 | 520 | predicted protein [Populus trichocarpa] | 0.958 | 0.846 | 0.838 | 0.0 | |
| 255565093 | 522 | sugar transporter, putative [Ricinus com | 0.982 | 0.863 | 0.840 | 0.0 | |
| 224088232 | 519 | predicted protein [Populus trichocarpa] | 0.978 | 0.865 | 0.815 | 0.0 | |
| 195638028 | 523 | sugar carrier protein A [Zea mays] | 0.962 | 0.845 | 0.805 | 0.0 | |
| 226510111 | 523 | uncharacterized protein LOC100274108 [Ze | 0.962 | 0.845 | 0.805 | 0.0 | |
| 414885427 | 482 | TPA: sugar carrier protein A [Zea mays] | 0.960 | 0.914 | 0.807 | 0.0 | |
| 219887247 | 470 | unknown [Zea mays] | 0.960 | 0.938 | 0.807 | 0.0 |
| >gi|449457997|ref|XP_004146734.1| PREDICTED: sugar transport protein 7-like [Cucumis sativus] gi|449505413|ref|XP_004162461.1| PREDICTED: sugar transport protein 7-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/451 (82%), Positives = 413/451 (91%), Gaps = 2/451 (0%)
Query: 6 QKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIIC 65
+KFF VY K AHENNYCKY+NQGLAAFTSSLYLAGLV+S VASP+TR+YGRRASI+C
Sbjct: 59 KKFFPTVYRNKMRAHENNYCKYNNQGLAAFTSSLYLAGLVSSLVASPITRNYGRRASIVC 118
Query: 66 GGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQ 125
GGISFL+GA LNAAA N+ ML+ GRI+LGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQ
Sbjct: 119 GGISFLVGATLNAAAVNIEMLILGRIMLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQ 178
Query: 126 LATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKV 185
LATTLGIFTANMINYGTQK++ WGWRLSLGLAA PAL+MTVGG+LLPETPNSL+ERG K
Sbjct: 179 LATTLGIFTANMINYGTQKIDPWGWRLSLGLAAFPALLMTVGGLLLPETPNSLMERGAKE 238
Query: 186 EGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQIL 245
+GR+ LEKIRGT +VNAEY+D+ +ASE ANSIKHPFRNI ++RNRPQLVMA FMP FQIL
Sbjct: 239 KGRKTLEKIRGTNDVNAEYEDIQEASEFANSIKHPFRNIFQKRNRPQLVMAFFMPTFQIL 298
Query: 246 TGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGI 305
TGINSILFYAPVLFQSMGF GDA+LYSSA+TGAVLASSTLISIATVD+LGRR LLISGGI
Sbjct: 299 TGINSILFYAPVLFQSMGFGGDAALYSSALTGAVLASSTLISIATVDRLGRRVLLISGGI 358
Query: 306 QMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPL 365
QMITCQV+V+IILG+KFG N+ELSK FSILVV+VICLFVLAFGWSWGPLGWT+PSEIFPL
Sbjct: 359 QMITCQVVVAIILGVKFGNNEELSKGFSILVVIVICLFVLAFGWSWGPLGWTIPSEIFPL 418
Query: 366 ETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPETKG 425
ETRSAGQSITVAVNL FTFVIAQ FL+LLC+ K+GIFLFFAGW+ +MT+FVY FLPETKG
Sbjct: 419 ETRSAGQSITVAVNLLFTFVIAQSFLSLLCALKYGIFLFFAGWIIVMTVFVYIFLPETKG 478
Query: 426 VPIEEMILLWRKHWFWKRIMPVVEETNNQQS 456
VPIEEMIL+WRKHWFWK +MP +N QS
Sbjct: 479 VPIEEMILMWRKHWFWKNVMP--SNVDNDQS 507
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297809951|ref|XP_002872859.1| hypothetical protein ARALYDRAFT_327595 [Arabidopsis lyrata subsp. lyrata] gi|297318696|gb|EFH49118.1| hypothetical protein ARALYDRAFT_327595 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/456 (80%), Positives = 414/456 (90%), Gaps = 3/456 (0%)
Query: 6 QKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIIC 65
++FFH VY KKKHAHE+NYCKYDNQGLAAFTSSLYLAGLV++ VASPVTR+YGRRASI+C
Sbjct: 59 EEFFHTVYEKKKHAHESNYCKYDNQGLAAFTSSLYLAGLVSTLVASPVTRNYGRRASIVC 118
Query: 66 GGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQ 125
GGISFL+G+ALNA A NLAMLL GRI+LGVGIGFGNQAVPLYLSE+APTHLRGGLNMMFQ
Sbjct: 119 GGISFLIGSALNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQ 178
Query: 126 LATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKV 185
LATT+GIFTANM+NYGTQ+L+ WGWRLSLGLAA PAL+MT+GG LPETPNSL+ERG
Sbjct: 179 LATTIGIFTANMVNYGTQQLKPWGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLTE 238
Query: 186 EGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQIL 245
GRRVL K+RGT+ VNAE QDMVDASELANSIKHPFRNIL++R+RPQLVMAI MPMFQIL
Sbjct: 239 RGRRVLVKLRGTETVNAELQDMVDASELANSIKHPFRNILQKRHRPQLVMAICMPMFQIL 298
Query: 246 TGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGI 305
TGINSILFYAPVLFQ+MGF G+ASLYSSA+TGAVL ST ISI VD+LGRRALLI+GGI
Sbjct: 299 TGINSILFYAPVLFQTMGFGGNASLYSSALTGAVLVLSTFISIGLVDRLGRRALLITGGI 358
Query: 306 QMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPL 365
QMI CQVIV++ILG+KFG NQELSK +S++VVV ICLFV+AFGWSWGPLGWT+PSEIFPL
Sbjct: 359 QMIICQVIVAVILGVKFGDNQELSKGYSVIVVVFICLFVIAFGWSWGPLGWTIPSEIFPL 418
Query: 366 ETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPETKG 425
ETRSAGQSITVAVNL FTF+IAQ FL LLC+FKFGIFLFFAGWVT+MTIFVYF LPETKG
Sbjct: 419 ETRSAGQSITVAVNLLFTFIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVYFLLPETKG 478
Query: 426 VPIEEMILLWRKHWFWKRIMPVV---EETNNQQSIS 458
VPIEEM LLW KHWFWK+++P +E+ N+ + S
Sbjct: 479 VPIEEMTLLWSKHWFWKKVLPATNLEDESKNESNNS 514
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15235215|ref|NP_192114.1| sugar transport protein 7 [Arabidopsis thaliana] gi|75317777|sp|O04249.1|STP7_ARATH RecName: Full=Sugar transport protein 7; AltName: Full=Hexose transporter 7 gi|2104529|gb|AAC78697.1| putative hexose transporter [Arabidopsis thaliana] gi|7268589|emb|CAB80698.1| putative hexose transporter [Arabidopsis thaliana] gi|15487244|emb|CAC69067.1| STP7 protein [Arabidopsis thaliana] gi|332656716|gb|AEE82116.1| sugar transport protein 7 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/447 (81%), Positives = 408/447 (91%), Gaps = 2/447 (0%)
Query: 6 QKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIIC 65
++FFH VY KKK AHE+NYCKYDNQGLAAFTSSLYLAGLV++ VASP+TR+YGRRASI+C
Sbjct: 59 EEFFHTVYEKKKQAHESNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVC 118
Query: 66 GGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQ 125
GGISFL+G+ LNA A NLAMLL GRI+LGVGIGFGNQAVPLYLSE+APTHLRGGLNMMFQ
Sbjct: 119 GGISFLIGSGLNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQ 178
Query: 126 LATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKV 185
LATT+GIFTANM+NYGTQ+L+ WGWRLSLGLAA PAL+MT+GG LPETPNSL+ERG
Sbjct: 179 LATTIGIFTANMVNYGTQQLKPWGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLTE 238
Query: 186 EGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQIL 245
GRRVL K+RGT+ VNAE QDMVDASELANSIKHPFRNIL++R+RPQLVMAI MPMFQIL
Sbjct: 239 RGRRVLVKLRGTENVNAELQDMVDASELANSIKHPFRNILQKRHRPQLVMAICMPMFQIL 298
Query: 246 TGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGI 305
TGINSILFYAPVLFQ+MGF G+ASLYSSA+TGAVL ST ISI VD+LGRRALLI+GGI
Sbjct: 299 TGINSILFYAPVLFQTMGFGGNASLYSSALTGAVLVLSTFISIGLVDRLGRRALLITGGI 358
Query: 306 QMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPL 365
QMI CQVIV++ILG+KFG NQELSK +S++VV+ ICLFV+AFGWSWGPLGWT+PSEIFPL
Sbjct: 359 QMIICQVIVAVILGVKFGDNQELSKGYSVIVVIFICLFVVAFGWSWGPLGWTIPSEIFPL 418
Query: 366 ETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPETKG 425
ETRSAGQSITVAVNL FTF+IAQ FL LLC+FKFGIFLFFAGWVT+MTIFVYF LPETKG
Sbjct: 419 ETRSAGQSITVAVNLLFTFIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVYFLLPETKG 478
Query: 426 VPIEEMILLWRKHWFWKRIMPVVEETN 452
VPIEEM LLW KHWFWK+++P + TN
Sbjct: 479 VPIEEMTLLWSKHWFWKKVLP--DATN 503
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224144018|ref|XP_002325158.1| predicted protein [Populus trichocarpa] gi|222866592|gb|EEF03723.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/440 (83%), Positives = 402/440 (91%)
Query: 7 KFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICG 66
KFF VY KK+H HENNYCKY+NQGL+AFTSSLYLAGLVAS VASPVTR YGRRASIICG
Sbjct: 60 KFFPGVYEKKQHVHENNYCKYNNQGLSAFTSSLYLAGLVASLVASPVTRIYGRRASIICG 119
Query: 67 GISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQL 126
G+SFL+GA LNA+A NLAMLL GRI+LGVGIGFGNQAVP+YLSEMAPTHLRG LNMMFQL
Sbjct: 120 GVSFLIGATLNASAINLAMLLLGRIMLGVGIGFGNQAVPVYLSEMAPTHLRGALNMMFQL 179
Query: 127 ATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKVE 186
ATT GIFTANMINYGTQKLE WGWRLSLGLAA PA++MTVGGI+L ETPNSLIERG + E
Sbjct: 180 ATTTGIFTANMINYGTQKLEPWGWRLSLGLAAVPAVLMTVGGIVLSETPNSLIERGMQDE 239
Query: 187 GRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILT 246
GR+VLEKIRGTK V+AE++DMVDASELANSIKHPFRNIL +RNRPQLVMAI +P FQILT
Sbjct: 240 GRKVLEKIRGTKNVDAEFEDMVDASELANSIKHPFRNILTKRNRPQLVMAILLPAFQILT 299
Query: 247 GINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQ 306
GINSILFYAPVLFQSMGF G+ASLY+SA+TG VL SST I+IATVD++GRR LLISGGIQ
Sbjct: 300 GINSILFYAPVLFQSMGFGGNASLYASAVTGGVLCSSTFITIATVDRVGRRFLLISGGIQ 359
Query: 307 MITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLE 366
MI CQVIVS+IL LKFG NQ LSK FS+LVVV+ICLFVLAFGWSWG LGWT+PSEIFPLE
Sbjct: 360 MIICQVIVSVILRLKFGDNQHLSKGFSVLVVVMICLFVLAFGWSWGGLGWTIPSEIFPLE 419
Query: 367 TRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPETKGV 426
TRSAGQ ITVAVNL FTF IAQ FL+LLC+FKFGIFLFFA WV +MTIFVYFFLPETKGV
Sbjct: 420 TRSAGQGITVAVNLLFTFAIAQSFLSLLCAFKFGIFLFFACWVLLMTIFVYFFLPETKGV 479
Query: 427 PIEEMILLWRKHWFWKRIMP 446
PIEEMI +WRKHWFWKRI+P
Sbjct: 480 PIEEMIFMWRKHWFWKRIVP 499
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255565093|ref|XP_002523539.1| sugar transporter, putative [Ricinus communis] gi|1723182|sp|Q10710.1|STA_RICCO RecName: Full=Sugar carrier protein A gi|169736|gb|AAA79769.1| sugar carrier protein [Ricinus communis] gi|223537246|gb|EEF38878.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/451 (84%), Positives = 414/451 (91%)
Query: 6 QKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIIC 65
+KFF VYLKKKHAHENNYCKYD+Q LAAFTSSLYLAGL AS VA P+TR YGRRASII
Sbjct: 59 EKFFRSVYLKKKHAHENNYCKYDDQRLAAFTSSLYLAGLAASLVAGPITRIYGRRASIIS 118
Query: 66 GGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQ 125
GGISFL+GAALNA A NLAMLL GRI+LGVGIGFGNQAVPLYLSEMAPTHLRGGLN+MFQ
Sbjct: 119 GGISFLIGAALNATAINLAMLLLGRIMLGVGIGFGNQAVPLYLSEMAPTHLRGGLNIMFQ 178
Query: 126 LATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKV 185
LATT GIFTANM+NYGT KLE+WGWRLSLGLAAAPAL+MT+GG+LLPETPNSLIE+G
Sbjct: 179 LATTSGIFTANMVNYGTHKLESWGWRLSLGLAAAPALLMTIGGLLLPETPNSLIEQGLHE 238
Query: 186 EGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQIL 245
+GR VLEKIRGTK V+AE+QDM+DASELANSIKHPFRNILE+RNRPQLVMAIFMP FQIL
Sbjct: 239 KGRNVLEKIRGTKHVDAEFQDMLDASELANSIKHPFRNILEKRNRPQLVMAIFMPTFQIL 298
Query: 246 TGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGI 305
TGIN ILFYAP LFQSMGF G+A+LYSSA+TGAVL SST ISIATVD+LGRR LLISGGI
Sbjct: 299 TGINIILFYAPPLFQSMGFGGNAALYSSAVTGAVLCSSTFISIATVDRLGRRFLLISGGI 358
Query: 306 QMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPL 365
QMITCQVIV+IILG+KFG NQ+LSKSFS+LVV++ICLFVLAFGWSWGPLGWTVPSEIFPL
Sbjct: 359 QMITCQVIVAIILGVKFGDNQQLSKSFSVLVVIMICLFVLAFGWSWGPLGWTVPSEIFPL 418
Query: 366 ETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPETKG 425
ETRSAGQSITVAVNLFFTFVIAQ F +LLC+FKFGIFLFFAGWVT+MT FVY FLPETKG
Sbjct: 419 ETRSAGQSITVAVNLFFTFVIAQSFPSLLCAFKFGIFLFFAGWVTVMTAFVYIFLPETKG 478
Query: 426 VPIEEMILLWRKHWFWKRIMPVVEETNNQQS 456
VPIEEMI LWRKHWFWK+I+P E ++ +
Sbjct: 479 VPIEEMIFLWRKHWFWKKIVPGQPEVDDSRE 509
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224088232|ref|XP_002308382.1| predicted protein [Populus trichocarpa] gi|222854358|gb|EEE91905.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/449 (81%), Positives = 406/449 (90%)
Query: 6 QKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIIC 65
+KFFH VY KK+ AHENNYCKY++QGL+AFTSSLYLAGLV+S VASP+TR YGRR SIIC
Sbjct: 59 KKFFHGVYEKKQRAHENNYCKYNDQGLSAFTSSLYLAGLVSSLVASPITRIYGRRISIIC 118
Query: 66 GGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQ 125
GG SFL+GA LNA + NLAMLL GRI+LGVGIGFGNQAVPLYLSEMAPTHLRG LNMMFQ
Sbjct: 119 GGSSFLIGAILNATSINLAMLLMGRIMLGVGIGFGNQAVPLYLSEMAPTHLRGALNMMFQ 178
Query: 126 LATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKV 185
LATT G+FTANM+NYGTQKL+ WGWRLSLGLAA PA++MTVGGI L ETPNSLIERG +
Sbjct: 179 LATTSGVFTANMVNYGTQKLKPWGWRLSLGLAAFPAILMTVGGIYLSETPNSLIERGMRD 238
Query: 186 EGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQIL 245
+GR+VLEKIRGTK V+AE+ DMVDASELANSIKHPFRNIL +RNRPQLVMAI +P FQIL
Sbjct: 239 KGRKVLEKIRGTKNVDAEFDDMVDASELANSIKHPFRNILIKRNRPQLVMAILLPAFQIL 298
Query: 246 TGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGI 305
TGINSILFYAPVLFQSMGF +ASLYSSA+TGA L SST I+IATVD+LGRR LLISGGI
Sbjct: 299 TGINSILFYAPVLFQSMGFGRNASLYSSAVTGAALCSSTFIAIATVDRLGRRFLLISGGI 358
Query: 306 QMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPL 365
QMITCQVIVSIILG+KFG NQ+LSK FS+LVV+VICLFV+AFGWSWG LGWT+PSEIFPL
Sbjct: 359 QMITCQVIVSIILGVKFGDNQKLSKVFSVLVVIVICLFVVAFGWSWGGLGWTIPSEIFPL 418
Query: 366 ETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPETKG 425
ETRSAGQSITVAVNL FTFVIAQ+FL+LLC+FKFGIFLFFA W+ +MTIFVYFFLPETKG
Sbjct: 419 ETRSAGQSITVAVNLLFTFVIAQVFLSLLCAFKFGIFLFFASWILVMTIFVYFFLPETKG 478
Query: 426 VPIEEMILLWRKHWFWKRIMPVVEETNNQ 454
VPIEEMI LWRKHWFWK+I+P + Q
Sbjct: 479 VPIEEMIFLWRKHWFWKKIVPGNPNDDTQ 507
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|195638028|gb|ACG38482.1| sugar carrier protein A [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/442 (80%), Positives = 404/442 (91%)
Query: 5 FQKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASII 64
+KFF V+ +K +NNYCKYDNQGLAAFTSSLYLAGLVAS VASPVTR+YGR+ASI+
Sbjct: 58 LEKFFPVVFHRKNSGGKNNYCKYDNQGLAAFTSSLYLAGLVASLVASPVTRNYGRKASIV 117
Query: 65 CGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMF 124
CGG+SFL+GAALN AA NLAML+ GRI+LGVGIGFGNQAVPLYLSEMAP HLRGGLNMMF
Sbjct: 118 CGGVSFLIGAALNVAAVNLAMLILGRIMLGVGIGFGNQAVPLYLSEMAPAHLRGGLNMMF 177
Query: 125 QLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKK 184
QLATTLGIFTAN+INYGTQ ++ WGWRLSLGLAA PAL+MT+GG+ LPETPNSLIERG+
Sbjct: 178 QLATTLGIFTANLINYGTQNIKPWGWRLSLGLAAVPALLMTLGGLFLPETPNSLIERGRV 237
Query: 185 VEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQI 244
EGRRVLE+IRGT +V+AE+ DMV+ASELAN+++HPFRNIL+ RNRPQLVMA+ MP FQI
Sbjct: 238 EEGRRVLERIRGTADVDAEFTDMVEASELANTVEHPFRNILQPRNRPQLVMAVCMPAFQI 297
Query: 245 LTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGG 304
LTGINSILFYAPVLFQSMGF G+ASLYSS +TGAVL SSTLISI VD+LGRR LLISGG
Sbjct: 298 LTGINSILFYAPVLFQSMGFGGNASLYSSVLTGAVLFSSTLISIGIVDRLGRRKLLISGG 357
Query: 305 IQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFP 364
IQMI CQVIV++ILG+KFG ++L++S+S+ VVVVICLFVLAFGWSWGPLGWTVPSEIFP
Sbjct: 358 IQMIVCQVIVAVILGVKFGAEKQLARSYSVAVVVVICLFVLAFGWSWGPLGWTVPSEIFP 417
Query: 365 LETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPETK 424
LETRSAGQSITVAVNL FTF IAQ FL+LLC+FKFGIFLFFAGW+T+MT+FVY FLPETK
Sbjct: 418 LETRSAGQSITVAVNLLFTFAIAQAFLSLLCAFKFGIFLFFAGWITVMTVFVYVFLPETK 477
Query: 425 GVPIEEMILLWRKHWFWKRIMP 446
GVPIEEM+LLWRKHWFWK++MP
Sbjct: 478 GVPIEEMVLLWRKHWFWKKVMP 499
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|226510111|ref|NP_001141959.1| uncharacterized protein LOC100274108 [Zea mays] gi|194706590|gb|ACF87379.1| unknown [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/442 (80%), Positives = 404/442 (91%)
Query: 5 FQKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASII 64
+KFF V+ +K +NNYCKYDNQGLAAFTSSLYLAGLVAS VASPVTR+YGR+ASI+
Sbjct: 58 LEKFFPVVFHRKNSGGKNNYCKYDNQGLAAFTSSLYLAGLVASLVASPVTRNYGRKASIV 117
Query: 65 CGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMF 124
CGG+SFL+GAALN AA NLAML+ GRI+LGVGIGFGNQAVPLYLSEMAP HLRGGLNMMF
Sbjct: 118 CGGVSFLIGAALNVAAVNLAMLILGRIMLGVGIGFGNQAVPLYLSEMAPAHLRGGLNMMF 177
Query: 125 QLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKK 184
QLATTLGIFTAN+INYGTQ ++ WGWRLSLGLAA PAL+MT+GG+ LPETPNSLIERG+
Sbjct: 178 QLATTLGIFTANLINYGTQNIKPWGWRLSLGLAAVPALLMTLGGLFLPETPNSLIERGRV 237
Query: 185 VEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQI 244
EGRRVLE+IRGT +V+AE+ DMV+ASELAN+++HPFRNIL+ RNRPQLVMA+ MP FQI
Sbjct: 238 EEGRRVLERIRGTADVDAEFTDMVEASELANTVEHPFRNILQPRNRPQLVMAVCMPAFQI 297
Query: 245 LTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGG 304
LTGINSILFYAPVLFQSMGF G+ASLYSS +TGAVL SSTLISI VD+LGRR LLISGG
Sbjct: 298 LTGINSILFYAPVLFQSMGFGGNASLYSSVLTGAVLFSSTLISIGIVDRLGRRKLLISGG 357
Query: 305 IQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFP 364
IQMI CQVIV++ILG+KFG ++L++S+S+ VVVVICLFVLAFGWSWGPLGWTVPSEIFP
Sbjct: 358 IQMIVCQVIVAVILGVKFGAEKQLARSYSVAVVVVICLFVLAFGWSWGPLGWTVPSEIFP 417
Query: 365 LETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPETK 424
LETRSAGQSITVAVNL FTF IAQ FL+LLC+FKFGIFLFFAGW+T+MT+FVY FLPETK
Sbjct: 418 LETRSAGQSITVAVNLLFTFAIAQAFLSLLCAFKFGIFLFFAGWITVMTVFVYVFLPETK 477
Query: 425 GVPIEEMILLWRKHWFWKRIMP 446
GVPIEEM+LLWRKHWFWK++MP
Sbjct: 478 GVPIEEMVLLWRKHWFWKKVMP 499
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414885427|tpg|DAA61441.1| TPA: sugar carrier protein A [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/441 (80%), Positives = 404/441 (91%)
Query: 6 QKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIIC 65
+KFF V+ +K +NNYCKYDNQGLAAFTSSLYLAGLVAS VASPVTR+YGR+ASI+C
Sbjct: 18 EKFFPVVFHRKNSGGKNNYCKYDNQGLAAFTSSLYLAGLVASLVASPVTRNYGRKASIVC 77
Query: 66 GGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQ 125
GG+SFL+GAALN AA NLAML+ GRI+LGVGIGFGNQAVPLYLSEMAP HLRGGLNMMFQ
Sbjct: 78 GGVSFLIGAALNVAAVNLAMLILGRIMLGVGIGFGNQAVPLYLSEMAPAHLRGGLNMMFQ 137
Query: 126 LATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKV 185
LATTLGIFTAN+INYGTQ ++ WGWRLSLGLAA PAL+MT+GG+ LPETPNSLIERG+
Sbjct: 138 LATTLGIFTANLINYGTQNIKPWGWRLSLGLAAVPALLMTLGGLFLPETPNSLIERGRVE 197
Query: 186 EGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQIL 245
EGRRVLE+IRGT +V+AE+ DMV+ASELAN+++HPFRNIL+ RNRPQLVMA+ MP FQIL
Sbjct: 198 EGRRVLERIRGTADVDAEFTDMVEASELANTVEHPFRNILQPRNRPQLVMAVCMPAFQIL 257
Query: 246 TGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGI 305
TGINSILFYAPVLFQSMGF G+ASLYSS +TGAVL SSTLISI VD+LGRR LLISGGI
Sbjct: 258 TGINSILFYAPVLFQSMGFGGNASLYSSVLTGAVLFSSTLISIGIVDRLGRRKLLISGGI 317
Query: 306 QMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPL 365
QMI CQVIV++ILG+KFG ++L++S+S+ VVVVICLFVLAFGWSWGPLGWTVPSEIFPL
Sbjct: 318 QMIVCQVIVAVILGVKFGAEKQLARSYSVAVVVVICLFVLAFGWSWGPLGWTVPSEIFPL 377
Query: 366 ETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPETKG 425
ETRSAGQSITVAVNL FTF IAQ FL+LLC+FKFGIFLFFAGW+T+MT+FVY FLPETKG
Sbjct: 378 ETRSAGQSITVAVNLLFTFAIAQAFLSLLCAFKFGIFLFFAGWITVMTVFVYVFLPETKG 437
Query: 426 VPIEEMILLWRKHWFWKRIMP 446
VPIEEM+LLWRKHWFWK++MP
Sbjct: 438 VPIEEMVLLWRKHWFWKKVMP 458
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|219887247|gb|ACL53998.1| unknown [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/441 (80%), Positives = 404/441 (91%)
Query: 6 QKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIIC 65
+KFF V+ +K +NNYCKYDNQGLAAFTSSLYLAGLVAS VASPVTR+YGR+ASI+C
Sbjct: 6 EKFFPVVFHRKNSGGKNNYCKYDNQGLAAFTSSLYLAGLVASLVASPVTRNYGRKASIVC 65
Query: 66 GGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQ 125
GG+SFL+GAALN AA NLAML+ GRI+LGVGIGFGNQAVPLYLSEMAP HLRGGLNMMFQ
Sbjct: 66 GGVSFLIGAALNVAAVNLAMLILGRIMLGVGIGFGNQAVPLYLSEMAPAHLRGGLNMMFQ 125
Query: 126 LATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKV 185
LATTLGIFTAN+INYGTQ ++ WGWRLSLGLAA PAL+MT+GG+ LPETPNSLIERG+
Sbjct: 126 LATTLGIFTANLINYGTQNIKPWGWRLSLGLAAVPALLMTLGGLFLPETPNSLIERGRVE 185
Query: 186 EGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQIL 245
EGRRVLE+IRGT +V+AE+ DMV+ASELAN+++HPFRNIL+ RNRPQLVMA+ MP FQIL
Sbjct: 186 EGRRVLERIRGTADVDAEFTDMVEASELANTVEHPFRNILQPRNRPQLVMAVCMPAFQIL 245
Query: 246 TGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGI 305
TGINSILFYAPVLFQSMGF G+ASLYSS +TGAVL SSTLISI VD+LGRR LLISGGI
Sbjct: 246 TGINSILFYAPVLFQSMGFGGNASLYSSVLTGAVLFSSTLISIGIVDRLGRRKLLISGGI 305
Query: 306 QMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPL 365
QMI CQVIV++ILG+KFG ++L++S+S+ VVVVICLFVLAFGWSWGPLGWTVPSEIFPL
Sbjct: 306 QMIVCQVIVAVILGVKFGAEKQLARSYSVAVVVVICLFVLAFGWSWGPLGWTVPSEIFPL 365
Query: 366 ETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPETKG 425
ETRSAGQSITVAVNL FTF IAQ FL+LLC+FKFGIFLFFAGW+T+MT+FVY FLPETKG
Sbjct: 366 ETRSAGQSITVAVNLLFTFAIAQAFLSLLCAFKFGIFLFFAGWITVMTVFVYVFLPETKG 425
Query: 426 VPIEEMILLWRKHWFWKRIMP 446
VPIEEM+LLWRKHWFWK++MP
Sbjct: 426 VPIEEMVLLWRKHWFWKKVMP 446
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 459 | ||||||
| TAIR|locus:2132213 | 513 | STP7 "sugar transporter protei | 0.973 | 0.871 | 0.766 | 6.4e-186 | |
| TAIR|locus:2151074 | 526 | MSS1 "AT5G26340" [Arabidopsis | 0.958 | 0.836 | 0.577 | 8.3e-138 | |
| TAIR|locus:2195995 | 504 | STP14 "sugar transport protein | 0.969 | 0.882 | 0.561 | 5.4e-134 | |
| TAIR|locus:2092221 | 514 | AT3G19940 [Arabidopsis thalian | 0.965 | 0.861 | 0.525 | 1.6e-127 | |
| TAIR|locus:2202044 | 522 | STP1 "AT1G11260" [Arabidopsis | 0.958 | 0.842 | 0.543 | 2.3e-126 | |
| TAIR|locus:2166781 | 514 | STP11 "sugar transporter 11" [ | 0.947 | 0.846 | 0.55 | 2.9e-126 | |
| TAIR|locus:2011957 | 517 | STP9 "sugar transporter 9" [Ar | 0.965 | 0.856 | 0.531 | 7.8e-126 | |
| TAIR|locus:2092286 | 514 | STP4 "sugar transporter 4" [Ar | 0.960 | 0.857 | 0.520 | 3e-124 | |
| TAIR|locus:2083003 | 507 | STP6 "sugar transporter 6" [Ar | 0.958 | 0.867 | 0.487 | 4.7e-119 | |
| TAIR|locus:2179734 | 507 | AT5G26250 [Arabidopsis thalian | 0.958 | 0.867 | 0.492 | 1.6e-118 |
| TAIR|locus:2132213 STP7 "sugar transporter protein 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1803 (639.7 bits), Expect = 6.4e-186, P = 6.4e-186
Identities = 345/450 (76%), Positives = 384/450 (85%)
Query: 4 EF-QKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRAS 62
EF ++FFH VY KKK AHE+NYCKYDNQGLAAFTSSLYLAGLV++ VASP+TR+YGRRAS
Sbjct: 56 EFLEEFFHTVYEKKKQAHESNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRAS 115
Query: 63 IICGGISFXXXXXXXXXXXXXXXXXTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNM 122
I+CGGISF GRI+LGVGIGFGNQAVPLYLSE+APTHLRGGLNM
Sbjct: 116 IVCGGISFLIGSGLNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNM 175
Query: 123 MFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERG 182
MFQLATT+GIFTANM+NYGTQ+L+ WGWRLSLGLAA PAL+MT+GG LPETPNSL+ERG
Sbjct: 176 MFQLATTIGIFTANMVNYGTQQLKPWGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERG 235
Query: 183 KKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMF 242
GRRVL K+RGT+ VNAE QDMVDASELANSIKHPFRNIL++R+RPQLVMAI MPMF
Sbjct: 236 LTERGRRVLVKLRGTENVNAELQDMVDASELANSIKHPFRNILQKRHRPQLVMAICMPMF 295
Query: 243 QILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLIS 302
QILTGINSILFYAPVLFQ+MGF G+ASLYSSA+TGAVL ST ISI VD+LGRRALLI+
Sbjct: 296 QILTGINSILFYAPVLFQTMGFGGNASLYSSALTGAVLVLSTFISIGLVDRLGRRALLIT 355
Query: 303 GGIQMITCQVIVSIILGLKFGPNQELSKXXXXXXXXXXXXXXLAFGWSWGPLGWTVPSEI 362
GGIQMI CQVIV++ILG+KFG NQELSK +AFGWSWGPLGWT+PSEI
Sbjct: 356 GGIQMIICQVIVAVILGVKFGDNQELSKGYSVIVVIFICLFVVAFGWSWGPLGWTIPSEI 415
Query: 363 FPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPE 422
FPLETRSAGQSITVAVNL FTF+IAQ FL LLC+FKFGIFLFFAGWVT+MTIFVYF LPE
Sbjct: 416 FPLETRSAGQSITVAVNLLFTFIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVYFLLPE 475
Query: 423 TKGVPIEEMILLWRKHWFWKRIMPVVEETN 452
TKGVPIEEM LLW KHWFWK+++P + TN
Sbjct: 476 TKGVPIEEMTLLWSKHWFWKKVLP--DATN 503
|
|
| TAIR|locus:2151074 MSS1 "AT5G26340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1349 (479.9 bits), Expect = 8.3e-138, P = 8.3e-138
Identities = 257/445 (57%), Positives = 323/445 (72%)
Query: 6 QKFFHDVYLKKKHA--HENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASI 63
+KFF VY K ++NYCKYDNQGL FTSSLYLAGL A+F AS TR GRR ++
Sbjct: 55 EKFFPVVYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTM 114
Query: 64 ICGGISFXXXXXXXXXXXXXXXXXTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMM 123
+ G+ F GRILLG G+GF NQAVPL+LSE+APT +RGGLN++
Sbjct: 115 LIAGVFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNIL 174
Query: 124 FQLATTLGIFTANMINYGTQKLET-WGWRLSLGLAAAPALMMTVGGILLPETPNSLIERG 182
FQL T+GI AN++NYGT K++ WGWRLSLGLA PAL++TVG +L+ ETPNSL+ERG
Sbjct: 175 FQLNVTIGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERG 234
Query: 183 KKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMF 242
+ EG+ VL +IRGT V E+ D+++AS LA +KHPFRN+L+RRNRPQLV+A+ + +F
Sbjct: 235 RLDEGKAVLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIF 294
Query: 243 QILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLIS 302
Q TGIN+I+FYAPVLF ++GF DASLYS+ +TGAV STL+SI +VDK+GRR LL+
Sbjct: 295 QQCTGINAIMFYAPVLFSTLGFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLE 354
Query: 303 GGIQMITCQVIVSIILGLKF-GPNQELSKXXXXXXXXXXXXXXLAFGWSWGPLGWTVPSE 361
G+QM QV+++IILG+K + LSK AF WSWGPLGW +PSE
Sbjct: 355 AGVQMFFSQVVIAIILGVKVTDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLGWLIPSE 414
Query: 362 IFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLP 421
FPLETRSAGQS+TV VNL FTF+IAQ FL++LC FKFGIF+FF+ WV IM++FV F LP
Sbjct: 415 TFPLETRSAGQSVTVCVNLLFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFVMFLLP 474
Query: 422 ETKGVPIEEMI-LLWRKHWFWKRIM 445
ETK +PIEEM +W+KHWFW R M
Sbjct: 475 ETKNIPIEEMTERVWKKHWFWARFM 499
|
|
| TAIR|locus:2195995 STP14 "sugar transport protein 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1313 (467.3 bits), Expect = 5.4e-134, P = 5.4e-134
Identities = 251/447 (56%), Positives = 320/447 (71%)
Query: 6 QKFFHDVYLKKK-HAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASII 64
++FF +Y +K+ H +E +YCKYDNQ L FTSSLY AGL+++F AS VTR YGRR SI+
Sbjct: 58 KEFFPGIYKRKQMHLNETDYCKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGRRGSIL 117
Query: 65 CGGISFXXXXXXXXXXXXXXXXXTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMF 124
G +SF GRI LG+GIGFGNQAVPLYLSEMAP +RG +N +F
Sbjct: 118 VGSVSFFLGGVINAAAKNILMLILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGTVNQLF 177
Query: 125 QLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKK 184
QL T +GI AN+INY T+++ WGWRLSLGLA PA++M +GG++LPETPNSL+E+GK
Sbjct: 178 QLTTCIGILVANLINYKTEQIHPWGWRLSLGLATVPAILMFLGGLVLPETPNSLVEQGKL 237
Query: 185 VEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVM-AIFMPMFQ 243
+ + VL K+RGT + AE+QD+V+AS+ A ++K+PFRN+L RRNRPQLV+ AI +P FQ
Sbjct: 238 EKAKAVLIKVRGTNNIEAEFQDLVEASDAARAVKNPFRNLLARRNRPQLVIGAIGLPAFQ 297
Query: 244 ILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISG 303
LTG+NSILFYAPV+FQS+GF G ASL SS +T A L + ++S+ + DK GRR LL+
Sbjct: 298 QLTGMNSILFYAPVMFQSLGFGGSASLISSTITNAALVVAAIMSMYSADKFGRRFLLLEA 357
Query: 304 GIQMITCQVIVSIILGLKFGPNQELSKXXXXXXXXXXXXXXLAFGWSWGPLGWTVPSEIF 363
++M V+V + L LKFG +EL K LA+G SWGP+GW VPSE+F
Sbjct: 358 SVEMFCYMVVVGVTLALKFGEGKELPKSLGLILVVLICLFVLAYGRSWGPMGWLVPSELF 417
Query: 364 PLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPET 423
PLETRSAGQS+ V VNLFFT +IAQ FL LC K+GIFL FAG + M FVYF LPET
Sbjct: 418 PLETRSAGQSVVVCVNLFFTALIAQCFLVSLCHLKYGIFLLFAGLILGMGSFVYFLLPET 477
Query: 424 KGVPIEEMILLWRKHWFWKRIMPVVEE 450
K VPIEE+ LLWR+HW WK+ + V+E
Sbjct: 478 KQVPIEEVYLLWRQHWLWKKYVEDVDE 504
|
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| TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1252 (445.8 bits), Expect = 1.6e-127, P = 1.6e-127
Identities = 235/447 (52%), Positives = 310/447 (69%)
Query: 4 EF-QKFFHDVYLKKKHA-HENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRA 61
EF KFF V + K A H+ YCK+DNQ L FTSSLYLA LVASF+AS +TR +GR+
Sbjct: 54 EFLTKFFPQVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGRKV 113
Query: 62 SIICGGISFXXXXXXXXXXXXXXXXXTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLN 121
S+ GG++F GR+LLGVG+GF NQ+ P+YLSEMAP +RG LN
Sbjct: 114 SMFIGGLAFLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALN 173
Query: 122 MMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIER 181
+ FQ+A T+GI AN+INYGT K+ GWR+SLGLAA PA++M +G +LP+TPNS++ER
Sbjct: 174 IGFQMAITIGILVANLINYGTSKMAQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSMLER 233
Query: 182 GKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPM 241
GK E +++L+KIRG V+ E+QD++DA E A +++P++NI+E + RP L+ +P
Sbjct: 234 GKNEEAKQMLKKIRGADNVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCSAIPF 293
Query: 242 FQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLI 301
FQ +TGIN I+FYAPVLF+++GF DA+L S+ +TG V ST +SI VD+ GRR L +
Sbjct: 294 FQQITGINVIMFYAPVLFKTLGFGDDAALMSAVITGVVNMLSTFVSIYAVDRYGRRLLFL 353
Query: 302 SGGIQMITCQVIVSIILGLKFGPNQE--LSKXXXXXXXXXXXXXXLAFGWSWGPLGWTVP 359
GGIQM CQ++V +G +FG + L+ F WSWGPLGW VP
Sbjct: 354 EGGIQMFICQLLVGSFIGARFGTSGTGTLTPATADWILAFICVYVAGFAWSWGPLGWLVP 413
Query: 360 SEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFF 419
SEI PLE R AGQ+I V+VN+FFTF+I Q FLT+LC KFG+F FFA V IMT+F+YF
Sbjct: 414 SEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFASMVAIMTVFIYFL 473
Query: 420 LPETKGVPIEEMILLWRKHWFWKRIMP 446
LPETKGVPIEEM +W++HWFWK+ +P
Sbjct: 474 LPETKGVPIEEMGRVWKQHWFWKKYIP 500
|
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| TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1241 (441.9 bits), Expect = 2.3e-126, P = 2.3e-126
Identities = 242/445 (54%), Positives = 310/445 (69%)
Query: 6 QKFFHDVYLKKKH-AHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASII 64
++FF VY K++ A N YC+YD+ L FTSSLYLA L++S VAS VTR +GRR S++
Sbjct: 55 KRFFPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSML 114
Query: 65 CGGISFXXXXXXXXXXXXXXXXXTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMF 124
GGI F GRILLG GIGF NQAVPLYLSEMAP RG LN+ F
Sbjct: 115 FGGILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGF 174
Query: 125 QLATTLGIFTANMINYGTQKLET-WGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGK 183
QL+ T+GI A ++NY K++ WGWRLSLG A PAL++T+G ++LP+TPNS+IERG+
Sbjct: 175 QLSITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQ 234
Query: 184 KVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQ 243
E + L +IRG +V+ E+ D+V AS+ + SI+HP+RN+L R+ RP L MA+ +P FQ
Sbjct: 235 HEEAKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQ 294
Query: 244 ILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISG 303
LTGIN I+FYAPVLF ++GF DASL S+ +TG+V ++TL+SI VD+ GRR L + G
Sbjct: 295 QLTGINVIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEG 354
Query: 304 GIQMITCQVIVSIILGLKFGPNQ---ELSKXXXXXXXXXXXXXXLAFGWSWGPLGWTVPS 360
G QM+ CQ +V+ +G KFG + EL K F WSWGPLGW VPS
Sbjct: 355 GTQMLICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPS 414
Query: 361 EIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFL 420
EIFPLE RSA QSITV+VN+ FTF+IAQIFLT+LC KFG+FL FA +V +M+IFVY FL
Sbjct: 415 EIFPLEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYIFL 474
Query: 421 PETKGVPIEEMILLWRKHWFWKRIM 445
PETKG+PIEEM +WR HW+W R +
Sbjct: 475 PETKGIPIEEMGQVWRSHWYWSRFV 499
|
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| TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1240 (441.6 bits), Expect = 2.9e-126, P = 2.9e-126
Identities = 242/440 (55%), Positives = 302/440 (68%)
Query: 7 KFFHDVY--LKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASII 64
KFF DV ++ K E YCKYDN+ L FTSSLYLA L ASF+AS +TR +GR+ S++
Sbjct: 57 KFFPDVLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMV 116
Query: 65 CGGISFXXXXXXXXXXXXXXXXXTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMF 124
G ++F GR+ LGVG+GF NQ+VPLYLSEMAP +RG LN+ F
Sbjct: 117 IGSLAFLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGF 176
Query: 125 QLATTLGIFTANMINYGTQKLETW-GWRLSLGLAAAPALMMTVGGILLPETPNSLIERGK 183
QLA T+GI AN++NY T KL+ GWRLSLGLA PA+MM VG LP+TPNS++ERG
Sbjct: 177 QLAITIGILAANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGN 236
Query: 184 KVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQ 243
K + + +L+KIRGT EV E+ ++ +A E A +KHP+ NI++ R RPQL F+P FQ
Sbjct: 237 KEKAKEMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTFIPFFQ 296
Query: 244 ILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISG 303
LTGIN I+FYAPVLF+++GF DASL S+ +TG V ST++SI +VDK GRRAL + G
Sbjct: 297 QLTGINVIMFYAPVLFKTIGFGNDASLISAVITGLVNVLSTIVSIYSVDKFGRRALFLQG 356
Query: 304 GIQMITCQVIVSIILGLKFGPNQE--LSKXXXXXXXXXXXXXXLAFGWSWGPLGWTVPSE 361
G QMI Q+ V ++G KFG N E LS F WSWGPLGW VPSE
Sbjct: 357 GFQMIVTQIAVGSMIGWKFGFNGEGNLSGVDADIILALICLYVAGFAWSWGPLGWLVPSE 416
Query: 362 IFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLP 421
I PLE RSAGQS+ V+VN+FFTF I Q FLT+LC KFG+F FFAG V IMTIF+YF LP
Sbjct: 417 ICPLEIRSAGQSLNVSVNMFFTFFIGQFFLTMLCHMKFGLFYFFAGMVLIMTIFIYFLLP 476
Query: 422 ETKGVPIEEMILLWRKHWFW 441
ETKGVPIEEM +W++H +W
Sbjct: 477 ETKGVPIEEMGKVWKEHRYW 496
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| TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1236 (440.2 bits), Expect = 7.8e-126, P = 7.8e-126
Identities = 238/448 (53%), Positives = 307/448 (68%)
Query: 4 EF-QKFFHDVYLKKKHAH-ENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRA 61
EF KFF +V + A E YCK+DNQ L FTSSLYLA L +SFVAS VTR YGR+
Sbjct: 54 EFLSKFFPEVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGRKI 113
Query: 62 SIICGGISFXXXXXXXXXXXXXXXXXTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLN 121
S+ GG++F GR+LLGVG+GF NQ+ P+YLSEMAP +RG LN
Sbjct: 114 SMFVGGVAFLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALN 173
Query: 122 MMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIER 181
+ FQ+A T+GI AN+INYGT ++ GWR+SLGLAA PA++M +G +LP+TPNS++ER
Sbjct: 174 IGFQMAITIGILIANLINYGTSQMAKNGWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLER 233
Query: 182 GKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILER-RNRPQLVMAIFMP 240
GK + R +L+KIRG V+ E+QD+ DA E A + +P++NI ++ + RP LV +P
Sbjct: 234 GKYEQAREMLQKIRGADNVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFCSAIP 293
Query: 241 MFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALL 300
FQ +TGIN I+FYAPVLF+++GF DASL S+ +TGAV STL+SI VD+ GRR L
Sbjct: 294 FFQQITGINVIMFYAPVLFKTLGFADDASLISAVITGAVNVVSTLVSIYAVDRYGRRILF 353
Query: 301 ISGGIQMITCQVIVSIILGLKFGPNQE--LSKXXXXXXXXXXXXXXLAFGWSWGPLGWTV 358
+ GGIQMI Q++V ++G+KFG L+ F WSWGPLGW V
Sbjct: 354 LEGGIQMIVSQIVVGTLIGMKFGTTGSGTLTPATADWILAFICLYVAGFAWSWGPLGWLV 413
Query: 359 PSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYF 418
PSEI PLE R AGQ+I V+VN+FFTF+I Q FLT+LC KFG+F FF G V +MT+F+YF
Sbjct: 414 PSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFGGMVAVMTVFIYF 473
Query: 419 FLPETKGVPIEEMILLWRKHWFWKRIMP 446
LPETKGVPIEEM +W++H FWKR MP
Sbjct: 474 LLPETKGVPIEEMGRVWKQHPFWKRYMP 501
|
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| TAIR|locus:2092286 STP4 "sugar transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1221 (434.9 bits), Expect = 3.0e-124, P = 3.0e-124
Identities = 231/444 (52%), Positives = 303/444 (68%)
Query: 6 QKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIIC 65
++FF VY K K AHEN YC++D+Q L FTSSLY+A LV+S AS +TR +GR+ S+
Sbjct: 55 EEFFPYVYKKMKSAHENEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFL 114
Query: 66 GGISFXXXXXXXXXXXXXXXXXTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQ 125
GG +F GRILLG G+GF NQ+VP+YLSEMAP +LRG N FQ
Sbjct: 115 GGFTFFIGSAFNGFAQNIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGAFNNGFQ 174
Query: 126 LATTLGIFTANMINYGTQKLE-TWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKK 184
+A GI A +INY T +++ GWR+SLGLA PA+M+ +G ++LP+TPNSLIERG
Sbjct: 175 VAIIFGIVVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIGALILPDTPNSLIERGYT 234
Query: 185 VEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQI 244
E + +L+ IRGT EV+ E+QD++DASE + +KHP++NI+ R RPQL+M F+P FQ
Sbjct: 235 EEAKEMLQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTCFIPFFQQ 294
Query: 245 LTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGG 304
LTGIN I FYAPVLFQ++GF ASL S+ +TG + T +S+ TVD+ GRR L + GG
Sbjct: 295 LTGINVITFYAPVLFQTLGFGSKASLLSAMVTGIIELLCTFVSVFTVDRFGRRILFLQGG 354
Query: 305 IQMITCQVIVSIILGLKFGP--NQELSKXXXXXXXXXXXXXXLAFGWSWGPLGWTVPSEI 362
IQM+ Q+ + ++G+KFG + K F WSWGPLGW VPSEI
Sbjct: 355 IQMLVSQIAIGAMIGVKFGVAGTGNIGKSDANLIVALICIYVAGFAWSWGPLGWLVPSEI 414
Query: 363 FPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPE 422
PLE RSA Q+I V+VN+FFTF++AQ+FLT+LC KFG+F FFA +V IMTIF+Y LPE
Sbjct: 415 SPLEIRSAAQAINVSVNMFFTFLVAQLFLTMLCHMKFGLFFFFAFFVVIMTIFIYLMLPE 474
Query: 423 TKGVPIEEMILLWRKHWFWKRIMP 446
TK VPIEEM +W+ HWFW + +P
Sbjct: 475 TKNVPIEEMNRVWKAHWFWGKFIP 498
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| TAIR|locus:2083003 STP6 "sugar transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1172 (417.6 bits), Expect = 4.7e-119, P = 4.7e-119
Identities = 215/441 (48%), Positives = 295/441 (66%)
Query: 6 QKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIIC 65
++FF V+ +KKH HENNYCKYDNQ L FTSSLYLA LVASFVAS GRR ++
Sbjct: 53 KEFFPAVWERKKHVHENNYCKYDNQFLQLFTSSLYLAALVASFVASATCSKLGRRPTMQF 112
Query: 66 GGISFXXXXXXXXXXXXXXXXXTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQ 125
I F GR+ LG G+GFGNQAVPL+LSE+AP LRGGLN++FQ
Sbjct: 113 ASIFFLIGVGLTAGAVNLVMLIIGRLFLGFGVGFGNQAVPLFLSEIAPAQLRGGLNIVFQ 172
Query: 126 LATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKV 185
L T+GI AN++NY T + +GWR++LG A PA+++ G +L+ ETP SLIER K
Sbjct: 173 LMVTIGILIANIVNYFTATVHPYGWRIALGGAGIPAVILLFGSLLIIETPTSLIERNKNE 232
Query: 186 EGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQIL 245
EG+ L KIRG ++N EY+ +V A ++A+ +K P+R +L+ +RP ++ + + +FQ
Sbjct: 233 EGKEALRKIRGVDDINDEYESIVHACDIASQVKDPYRKLLKPASRPPFIIGMLLQLFQQF 292
Query: 246 TGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGI 305
TGIN+I+FYAPVLFQ++GF DA+L S+ +TG++ +T + I VD+ GRR LL+ +
Sbjct: 293 TGINAIMFYAPVLFQTVGFGSDAALLSAVITGSINVLATFVGIYLVDRTGRRFLLLQSSV 352
Query: 306 QMITCQVIVSIILGLKFGPNQELSKXXXXXXXXXXXXXXLAFGWSWGPLGWTVPSEIFPL 365
M+ CQ+I+ IIL G L + + F WSWGPLGW +PSE FPL
Sbjct: 353 HMLICQLIIGIILAKDLGVTGTLGRPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPL 412
Query: 366 ETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPETKG 425
ETRSAG ++ V+ N+FFTFVIAQ FL++LC + GIF FF+GW+ +M +F +FF+PETKG
Sbjct: 413 ETRSAGFAVAVSCNMFFTFVIAQAFLSMLCGMRSGIFFFFSGWIIVMGLFAFFFIPETKG 472
Query: 426 VPIEEMI-LLWRKHWFWKRIM 445
+ I++M +W+ HWFWKR M
Sbjct: 473 IAIDDMRESVWKPHWFWKRYM 493
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| TAIR|locus:2179734 AT5G26250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1167 (415.9 bits), Expect = 1.6e-118, P = 1.6e-118
Identities = 217/441 (49%), Positives = 293/441 (66%)
Query: 6 QKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIIC 65
++FF VY +KKHAHENNYCKYDNQ L FTSSLYLA LVASF AS GRR ++
Sbjct: 54 KEFFPSVYERKKHAHENNYCKYDNQFLQLFTSSLYLAALVASFFASATCSKLGRRPTMQL 113
Query: 66 GGISFXXXXXXXXXXXXXXXXXTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQ 125
I F GRILLG G+GFGNQAVPL+LSE+AP LRGGLN++FQ
Sbjct: 114 ASIFFLIGVGLAAGAVNIYMLIIGRILLGFGVGFGNQAVPLFLSEIAPARLRGGLNIVFQ 173
Query: 126 LATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKV 185
L T+GI AN++NY T + +GWR++LG A PAL++ G +L+ ETP SLIER K
Sbjct: 174 LMVTIGILIANIVNYFTSSIHPYGWRIALGGAGIPALILLFGSLLICETPTSLIERNKTK 233
Query: 186 EGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQIL 245
EG+ L+KIRG ++V+ EY+ +V A ++A +K P+ +++ +RP V+ + + FQ
Sbjct: 234 EGKETLKKIRGVEDVDEEYESIVHACDIARQVKDPYTKLMKPASRPPFVIGMLLQFFQQF 293
Query: 246 TGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGI 305
TGIN+I+FYAPVLFQ++GF DA+L S+ +TG + ST + I VDK GRR LL+ +
Sbjct: 294 TGINAIMFYAPVLFQTVGFGNDAALLSAVVTGTINVLSTFVGIFLVDKTGRRFLLLQSSV 353
Query: 306 QMITCQVIVSIILGLKFGPNQELSKXXXXXXXXXXXXXXLAFGWSWGPLGWTVPSEIFPL 365
M+ CQ+++ IIL L++ + F WSWGPLGW +PSE FPL
Sbjct: 354 HMLICQLVIGIILAKDLDVTGTLARPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPL 413
Query: 366 ETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPETKG 425
ETR+ G ++ V+ N+FFTFVIAQ FL++LC+ K GIF FF+GW+ +M +F FF+PETKG
Sbjct: 414 ETRTEGFALAVSCNMFFTFVIAQAFLSMLCAMKSGIFFFFSGWIVVMGLFALFFVPETKG 473
Query: 426 VPIEEMI-LLWRKHWFWKRIM 445
V I++M +W+ HW+WKR M
Sbjct: 474 VSIDDMRDSVWKLHWYWKRFM 494
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O04249 | STP7_ARATH | No assigned EC number | 0.8120 | 0.9694 | 0.8674 | yes | no |
| Q41144 | STC_RICCO | No assigned EC number | 0.5622 | 0.9651 | 0.8470 | N/A | no |
| P45598 | ARAE_KLEOX | No assigned EC number | 0.3017 | 0.8409 | 0.8177 | yes | no |
| C0SPB2 | YWTG_BACSU | No assigned EC number | 0.3178 | 0.8474 | 0.8512 | yes | no |
| Q39524 | HUP2_PARKE | No assigned EC number | 0.5123 | 0.9520 | 0.8092 | N/A | no |
| Q10710 | STA_RICCO | No assigned EC number | 0.8403 | 0.9825 | 0.8639 | N/A | no |
| Q07423 | HEX6_RICCO | No assigned EC number | 0.5679 | 0.9825 | 0.8843 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh1_pm.C_scaffold_6002815 | annotation not avaliable (515 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | Al_scaffold_0003_483 | annotation not avaliable (221 aa) | • | 0.433 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 459 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-107 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 1e-100 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 9e-54 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 3e-14 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-13 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 7e-13 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 7e-09 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 3e-08 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-07 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 3e-07 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 7e-05 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 1e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-04 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 3e-04 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 325 bits (836), Expect = e-107
Identities = 142/421 (33%), Positives = 224/421 (53%), Gaps = 12/421 (2%)
Query: 20 HENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAA 79
C S + L+ S A + +GR+ S++ G + F++GA L
Sbjct: 36 TSIGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGF 95
Query: 80 A--ANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANM 137
A + ML+ GR+++G+G+G + VP+Y+SE+AP LRG L ++QL T GI A +
Sbjct: 96 AKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAI 155
Query: 138 INYGTQK-LETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKVEGRRVLEKIRG 196
I G K + GWR+ LGL PA+++ +G + LPE+P L+ +GK E R VL K+RG
Sbjct: 156 IGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRG 215
Query: 197 TKEVNAEYQDMVDASELANSIKHPFRNILERR--NRPQLVMAIFMPMFQILTGINSILFY 254
+V+ E Q+ D+ E + + L R R +L+M + + +FQ LTGIN+I +Y
Sbjct: 216 VSDVDQEIQEEKDSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYY 275
Query: 255 APVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIV 314
+P +F+++G + + G V T I+I VD+ GRR LL+ G M C +++
Sbjct: 276 SPTIFETLGLSDSL--LVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVL 333
Query: 315 SIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSI 374
+ L K I+ +V I LF+ F WGP+ W + SE+FPL R +I
Sbjct: 334 GVALLGVAKS-----KGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAI 388
Query: 375 TVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPETKGVPIEEMILL 434
A N F+I +F + + +FL FAG + + +FV+FF+PETKG +EE+ L
Sbjct: 389 ATAANWLANFLIGFLFPIITGAIGGYVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDEL 448
Query: 435 W 435
+
Sbjct: 449 F 449
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 308 bits (791), Expect = e-100
Identities = 155/428 (36%), Positives = 230/428 (53%), Gaps = 15/428 (3%)
Query: 16 KKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAA 75
+ N Y + S + G + + A ++ +GR+ S++ + F++GA
Sbjct: 57 EFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAI 116
Query: 76 LNAAAAN---LAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGI 132
L AA + ML+ GR+LLG+G+G + VP+YLSE+AP LRG L ++QLA T GI
Sbjct: 117 LMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGI 176
Query: 133 FTANMINYGTQKLE-TWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKVEGRRVL 191
A G L T GWR+ LGL PA ++ +G LPE+P L+ +G+ E R+ L
Sbjct: 177 LVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSL 236
Query: 192 EKIRGTKEVNAEYQDMVDASELANSIKHPFRNI-------LERRNRPQLVMAIFMPMFQI 244
++RGT + E D ++ ++ SI+ RR R +L + + + FQ
Sbjct: 237 ARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQ 296
Query: 245 LTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGG 304
TGIN+I++Y+P +F++ G D + S + GAV + T ++I VD+ GRR LL+ G
Sbjct: 297 FTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGA 356
Query: 305 IQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFP 364
M C ++ I LG F SKS + +V I LF+ F WGP+ W + SEIFP
Sbjct: 357 AGMAICLFVLGI-LGASFVT--GSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFP 413
Query: 365 LETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFG-IFLFFAGWVTIMTIFVYFFLPET 423
L R G SI VA N F++ +F T+L S G +F+FF G + IFVYFFLPET
Sbjct: 414 LSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPET 473
Query: 424 KGVPIEEM 431
KG +EE+
Sbjct: 474 KGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 186 bits (475), Expect = 9e-54
Identities = 118/423 (27%), Positives = 193/423 (45%), Gaps = 44/423 (10%)
Query: 41 LAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTG----------- 89
+ G + + ++ +GRR S+ + F + +AL +A G
Sbjct: 70 IGGALGGYCSN----RFGRRDSLKIAAVLFFI-SALGSAWPEFGFTSIGPDNTGYVPEFV 124
Query: 90 --RILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQK--- 144
RI+ G+G+G + P+Y++E+AP H+RG L Q A G +NY +
Sbjct: 125 IYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGD 184
Query: 145 ---LETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVN 201
L T GWR A PAL+ + +PETP L+ RGK+ + +L KI G
Sbjct: 185 ASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLAT 244
Query: 202 AEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQS 261
Q++ + + L +V+ + + +FQ GIN +L+YAP +F++
Sbjct: 245 QALQEIKHSLDHGRKTGGK----LLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT 300
Query: 262 MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLK 321
+G D +L + + G + + T+++I TVDK GR+ L I G + M I LG
Sbjct: 301 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGM----AIGMFSLGTA 356
Query: 322 FGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLF 381
F I+ ++ + +V AF SWGP+ W + SEIFP R +I VA
Sbjct: 357 FYTQAP-----GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWI 411
Query: 382 FTFVIAQIF------LTLLCSFKFGIFLFFAGWVTIMT-IFVYFFLPETKGVPIEEMILL 434
+ ++ F L+ F G + G + ++ +F++ F+PETKG +EEM L
Sbjct: 412 ANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEAL 471
Query: 435 WRK 437
W
Sbjct: 472 WEP 474
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 3e-14
Identities = 91/407 (22%), Positives = 167/407 (41%), Gaps = 32/407 (7%)
Query: 29 NQGLAAFTSSLYLAG-LVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLL 87
+ T S + G L+ SFV ++ +GR+ ++ + + L A + N + L
Sbjct: 125 DAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFL 184
Query: 88 TGRILLGVGI-GFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLE 146
R+L+G+GI G QAV L E P R + + Q+ +LG+ ++ Y
Sbjct: 185 VFRLLVGMGIGGIWVQAVVLNT-EFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP--- 240
Query: 147 TWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKVEGRRVLEKIRGT--KEVNAEY 204
WR + P + + +PE+P LI +G+ E ++L++I K++ AE
Sbjct: 241 --DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEV 298
Query: 205 QDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGF 264
+ +L++S K L R P L M T + +Y VL
Sbjct: 299 LSLSLEKDLSSSKKQYSFLDLFRT--PNLRKTTLCLMMLWFT--TAFSYYGLVLDLG--- 351
Query: 265 KGDASLY-SSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFG 323
++Y ++G V + LI++ +D+LGRR M ++ + L L
Sbjct: 352 NLGGNIYLDLFISGLVELPAKLITLLLIDRLGRR-------YTMAASLLLAGVALLLLLF 404
Query: 324 PNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFT 383
+L F + V+ F + + + + +E++P R+ G + + +
Sbjct: 405 VPVDLY--FLRTALAVLGKFGITSAFQ---MVYLYTAELYPTVVRNLGVGVCSTMARVGS 459
Query: 384 FVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPETKGVPIEE 430
+ + + LF G + ++ + FLPETKGVP+ E
Sbjct: 460 IISPFLVYLGEKWLFLPLVLF--GGLALLAGILTLFLPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 2/141 (1%)
Query: 32 LAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRI 91
S+ L + S +A ++ +GRR ++ G + F LG+ L A A++L +LL GR
Sbjct: 36 AGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRF 95
Query: 92 LLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWR 151
LLG+G G A ++E P RG +F LG ++ E+ GWR
Sbjct: 96 LLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLL--AESLGWR 153
Query: 152 LSLGLAAAPALMMTVGGILLP 172
+ A L++ + + L
Sbjct: 154 WLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 7e-13
Identities = 65/344 (18%), Positives = 126/344 (36%), Gaps = 43/344 (12%)
Query: 36 TSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGV 95
++ L +A +A ++ +GRR ++ G + F LG L A++L +LL R+L G+
Sbjct: 38 LTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGL 97
Query: 96 GIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLG 155
G G A +++ P RG + LG ++ G +GWR +
Sbjct: 98 GGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLL--GGLLASLFGWRAAFL 155
Query: 156 LAAAPALMMTVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELAN 215
+ A AL+ V LL P +R K E
Sbjct: 156 ILAILALLAAVLAALLLPRPPPESKRPKPAEEAPA------------------------- 190
Query: 216 SIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAM 275
+ ++ +L V+ + + + ++L Y P+ + +G + +
Sbjct: 191 PLVPAWKLLLRDP-----VLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGL 245
Query: 276 TGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSIL 335
G + A L+ D+LGRR L+ + +I + ++++ S+
Sbjct: 246 AGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLT----------ESSLW 295
Query: 336 VVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVN 379
++V + L G + L + S++ P E R +
Sbjct: 296 LLVALLLLGFGAGLVFPAL-NALVSDLAPKEERGTASGLYNTAG 338
|
Length = 346 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 7e-09
Identities = 74/358 (20%), Positives = 134/358 (37%), Gaps = 65/358 (18%)
Query: 57 YGRRAS-----IICGGISFLLGAALNAAAANLA---MLLTGRILLGVGIGFGNQAVPLYL 108
GR+ + ++ G + L+G + A + +LL R++ G +G LYL
Sbjct: 62 IGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYL 121
Query: 109 SEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLET------WGWRLSLGLAAAPAL 162
+E AP RG Q+ +G+ A + L WGWR+ ++A +
Sbjct: 122 AEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSA---V 178
Query: 163 MMTVGGIL---LPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKH 219
++ +G L L ETP + K + R
Sbjct: 179 LVLIGLYLRRNLEETPVFEKAQEKHKKKRG------------------------------ 208
Query: 220 PFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAV 279
P L ++R ++ + + + T + L Q++G +++L ++ +
Sbjct: 209 PIAETL-TKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLIL 267
Query: 280 LASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVV 339
+ +S A D++GRR +LI + V + + L L L +
Sbjct: 268 FFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMAL---------LDSGSFTLFFFL 318
Query: 340 ICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSIT--VAVNLF--FTFVIAQIFLTL 393
+ L G GP+G +P E+FP E R G S+ +A +F F IA + +
Sbjct: 319 VLGMALIGGMYTGPMGSFLP-ELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM 375
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 58/283 (20%), Positives = 108/283 (38%), Gaps = 20/283 (7%)
Query: 33 AAFTSSLYLAGLVA-SFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRI 91
F S L G+ + P+ GRR ++ + F + L A A N+ LL R
Sbjct: 54 LGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRF 113
Query: 92 LLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWR 151
L G+G+G + +SE AP RG + +G + + +GWR
Sbjct: 114 LAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFL--AGWLIPVFGWR 171
Query: 152 LSLGLAA-APALMMTVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDA 210
+ AP L++ + LPE+ + L+ + + RR++ I + A+ + +
Sbjct: 172 SLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQ-SALPEQ 229
Query: 211 SELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYA-----PVLFQSMGFK 265
+ + F+ + + + A + +L + + Y P L +GF
Sbjct: 230 KATQGTKRSVFKALFQGK------TARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFS 283
Query: 266 GDASLYSSAMTGAVLASSTLISIATVDKLGRRA---LLISGGI 305
+ A+ ++I D+LG R LL+ G +
Sbjct: 284 LSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAV 326
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 37/191 (19%), Positives = 75/191 (39%), Gaps = 15/191 (7%)
Query: 231 PQLVMAIFMPMFQILTGINSILFYAPVLFQSM-GFKGDASLYSSAMTGAVLASSTLISIA 289
+L++ + + F + G +L Y P+ Q + G + ++ G L+
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233
Query: 290 TVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGW 349
D+LGRR LL+ G+ ++ ++ L L L+ + S+ +++V L +
Sbjct: 234 LSDRLGRRRLLLLIGL------LLAALGLLL-------LALAPSLALLLVALLLLGFGLG 280
Query: 350 SWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKF-GIFLFFAGW 408
P T+ SE+ P E R + + + LL + + G+FL A
Sbjct: 281 FAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAAL 340
Query: 409 VTIMTIFVYFF 419
+ + +
Sbjct: 341 ALLAALLLLLL 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-07
Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 8/143 (5%)
Query: 38 SLYLAG-----LVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRIL 92
L LAG L+ S ++ +T +GR+ ++ G F+L A+ A ++N+ +L+ R L
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 93 LGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWR- 151
G G F A ++++ P RG + LG + G + GWR
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPL--GGVLAQFLGWRA 118
Query: 152 LSLGLAAAPALMMTVGGILLPET 174
L LA + LLPET
Sbjct: 119 PFLFLAILALAAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 7e-05
Identities = 43/184 (23%), Positives = 68/184 (36%), Gaps = 19/184 (10%)
Query: 29 NQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASI-ICGGISFLLGAALNAAAANLAMLL 87
+ G +YL +V +F + GR+ + IC ++ A ++ L
Sbjct: 201 DSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFF-AFFSSFVQGYGFFL 259
Query: 88 TGRILLGVGIGFGNQAVPLYLSEMAPTHLRG-GLNMMFQLATTLGIFTANMINYGTQKLE 146
R+L G GIG V Y +E RG L+ + GI+ A M +
Sbjct: 260 FCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAM---AWAIIP 316
Query: 147 TWGWRLSLGLA-------------AAPALMMTVGGILLPETPNSLIERGKKVEGRRVLEK 193
+GW +G A A P + +PE+P +E GK E +L+
Sbjct: 317 HYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKL 376
Query: 194 IRGT 197
I T
Sbjct: 377 IHDT 380
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 93/433 (21%), Positives = 151/433 (34%), Gaps = 91/433 (21%)
Query: 63 IICGGISFLLGAALNAAAANLAMLLTG-RILLGVGIGFGNQAVPLYLSEMAPTHLRG--- 118
II + G + ++ ++ L R LGVGIG + SE A RG
Sbjct: 94 IIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMM 153
Query: 119 --------------GLNMMFQLATTLGIFTANMINYG------TQKLETWGWRLSLGLAA 158
+ + LA + WR+ +G A
Sbjct: 154 AAVFAMQGFGILAGAIVALIVLAGFKHSL--EAAADEASCTGSCVPAVDYMWRILIGFGA 211
Query: 159 APALMMTVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIK 218
PAL+ + +PETP + K VE ++ AE ++ AS K
Sbjct: 212 VPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPK 271
Query: 219 HP----FRNILERRNRPQLVMAIFMPMFQILTGINS------ILFYAPVLFQS-----MG 263
F + + R+ + L G I FY L Q +G
Sbjct: 272 ASWSDFFTHFFKWRH------------GKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIG 319
Query: 264 FKGDAS-------LYSSAMTGAVLA-SSTL----ISIATVDKLGRRALLISGGIQMITCQ 311
+ A+ LY +A+ ++A + T+ +++ VD +GR+ + + G +
Sbjct: 320 YSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFIL---- 375
Query: 312 VIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWT--VPSEIFPLETRS 369
++ +LG LS L + V+ F FG P T VP E+FP RS
Sbjct: 376 TVLFFVLG---FAYNHLSTH-GFLAIYVLAQFFANFG----PNATTFIVPGEVFPTRYRS 427
Query: 370 AGQSITVAVNLFFTFVIAQIFLTLLCS------FKFGIFL-----FFAGWVTIMTIFVYF 418
I+ A + FL L + GI++ FA ++ + I
Sbjct: 428 TAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFM-FLGILFTL 486
Query: 419 FLPETKGVPIEEM 431
+PETKG +EE+
Sbjct: 487 LIPETKGKSLEEL 499
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 3/147 (2%)
Query: 27 YDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFL-LGAALNAAAANLAM 85
S L G++ + + ++ GRR ++ G+ LG L A A +LA+
Sbjct: 208 LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL 267
Query: 86 LLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKL 145
LL +LLG G+GF A+ SE+AP RG + +F +LG ++ L
Sbjct: 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLL--AGLLL 325
Query: 146 ETWGWRLSLGLAAAPALMMTVGGILLP 172
+T G+ + AA AL+ + +LLP
Sbjct: 326 DTGGYGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 68/354 (19%), Positives = 115/354 (32%), Gaps = 64/354 (18%)
Query: 31 GLAAFTSSLY-LAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTG 89
G A + Y L + + + + +T RR ++ F++ L+A A + A+LL
Sbjct: 48 GAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLA 107
Query: 90 RILLGVGIGFGNQAVPLYLSEMAPTHLRGG----LNMMFQLATTLGIFTANMINYGTQKL 145
R L G+ G + + P RG + LAT LG + GT
Sbjct: 108 RALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLG------VPLGTFLG 161
Query: 146 ETWGWRLSLGLAAAPALM-MTVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEY 204
+ +GWR + A AL+ + + LLP
Sbjct: 162 QLFGWRATFLAIAVLALLALLLLWKLLPP------------------------------- 190
Query: 205 QDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGF 264
SE++ S+ P R +L RP +++ + + + P L GF
Sbjct: 191 ------SEISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGF 244
Query: 265 KGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGP 324
A G L+ D+ RRAL+ + + + +L L F
Sbjct: 245 SVSAVSLVLLAFGIAGFIGNLLGGRLADRGPRRALIAALLLLAL-------ALLALTFTG 297
Query: 325 NQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAV 378
+ + LF+ F +S G + S+ VA
Sbjct: 298 AS--------PALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAA 343
|
Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 459 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 100.0 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 100.0 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.98 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.98 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.98 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.98 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.98 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.97 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.97 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.97 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.97 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.97 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.96 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.96 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.96 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.96 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.96 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.96 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.95 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.95 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.95 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.95 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.95 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.95 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.94 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.94 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.94 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.94 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.93 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.93 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.92 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.9 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.9 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.9 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.9 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.89 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.89 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.88 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.88 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.88 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.87 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.87 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.86 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.85 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.85 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.84 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.8 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.77 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.74 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.73 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.72 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.7 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.68 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.67 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.64 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.55 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.52 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.51 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.51 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.5 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.49 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.49 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.49 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.49 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.48 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.48 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.48 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.47 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.47 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.46 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.42 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.42 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.41 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.41 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.4 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.4 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.4 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.39 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.39 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.38 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.38 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.37 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.37 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.37 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.37 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.36 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.36 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.35 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.35 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.34 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.34 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.32 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.32 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.32 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.32 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.32 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.31 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.3 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.3 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.29 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.29 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.29 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.28 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.28 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.28 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.28 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.27 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.27 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.27 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.27 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.26 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.26 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.26 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.25 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.25 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.25 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.24 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.24 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.23 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.23 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.23 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.23 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.21 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.19 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.18 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.18 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.16 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.16 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.15 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.15 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.14 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.14 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.13 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.12 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.11 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.1 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.08 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.08 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.07 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.07 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.07 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.06 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.05 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.05 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.05 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.05 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.03 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.02 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.02 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.01 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.96 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.95 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.95 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.92 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.92 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.89 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.88 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.86 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.84 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.83 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.83 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.82 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.82 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.8 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.79 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.76 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.76 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.74 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.72 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.71 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.7 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.68 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.66 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.63 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.61 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.6 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.58 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.55 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.54 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.53 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.53 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.5 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.5 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.5 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.48 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.44 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.39 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.35 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.3 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.3 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.26 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.25 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 98.22 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.21 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.12 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.05 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.03 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.01 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.99 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.95 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.94 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.79 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.68 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.61 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.59 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.47 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.38 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.35 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.34 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.26 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.18 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.84 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.7 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.52 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.52 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.39 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 96.31 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.21 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.03 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.17 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 94.89 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 94.51 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 94.47 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 94.41 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 94.39 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 94.22 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 94.17 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 93.96 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 93.85 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 93.73 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 92.88 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 92.78 | |
| KOG2881 | 294 | consensus Predicted membrane protein [Function unk | 92.12 | |
| PF03547 | 385 | Mem_trans: Membrane transport protein; InterPro: I | 86.89 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 84.19 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 83.42 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-46 Score=337.63 Aligned_cols=429 Identities=28% Similarity=0.492 Sum_probs=361.9
Q ss_pred hhhhhhhhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHH---
Q 012646 4 EFQKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAA--- 80 (459)
Q Consensus 4 f~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~--- 80 (459)
.+++|+++.+.........+ +.-+...+.+.+.+.+|.++|++..|.++||+|||..+.++.++..++.+++.++
T Consensus 36 ~i~~f~n~t~~~r~g~~~s~--~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~ 113 (485)
T KOG0569|consen 36 LIKSFINETLIERYGLPLSD--STLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSA 113 (485)
T ss_pred HHHHHHHHHHHHhcCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667667666554422211 1123347788999999999999999999999999999999999988888877665
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHH
Q 012646 81 ANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAP 160 (459)
Q Consensus 81 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~ 160 (459)
+++++++++|++.|+..|.......-++.|..|++.||....+.+.+..+|..++..++.-...-....|++.+.+..++
T Consensus 114 ~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~ 193 (485)
T KOG0569|consen 114 PSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIP 193 (485)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999998885333333446799999999999
Q ss_pred HHHHHHhhhccCCChhhHHh-hCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHh---hccCCcchHHHhccC-chhHHHH
Q 012646 161 ALMMTVGGILLPETPNSLIE-RGKKVEGRRVLEKIRGTKEVNAEYQDMVDASEL---ANSIKHPFRNILERR-NRPQLVM 235 (459)
Q Consensus 161 ~~~~~~~~~~~~es~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~ 235 (459)
+++.++...++||||||+.. +++.++|++.++++++.++.+++.++..++.++ +++.+.+++++++++ .+++..+
T Consensus 194 ~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i 273 (485)
T KOG0569|consen 194 ALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLI 273 (485)
T ss_pred HHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHH
Confidence 99999999999999999998 899999999999999998766555443333222 223566788999875 4556677
Q ss_pred HHHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHH
Q 012646 236 AIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVS 315 (459)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 315 (459)
.+.+....++.+.....+|...++++.|++..++.+.....+....+.++++.+++||+|||++++.+..++.+..+++.
T Consensus 274 ~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~ 353 (485)
T KOG0569|consen 274 GIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMS 353 (485)
T ss_pred HHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 77888888899999999999999999999999999999999999999999999999999999999999999888887776
Q ss_pred HHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012646 316 IILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLC 395 (459)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 395 (459)
......... +....+..+...+++...++.+.+|+.+.+.+|++|++.|++++++.....++..++....+..+.+
T Consensus 354 ~~~~l~~~~----~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~ 429 (485)
T KOG0569|consen 354 IALFLSNSF----GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQN 429 (485)
T ss_pred HHHHHHHHh----hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654332100 0112234567788888999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHhcc
Q 012646 396 SFKFGIFLFFAGWVTIMTIFVYFFLPETKGVPIEEMILLWRKH 438 (459)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (459)
..|...++.+.+.+++..+..+..+||||+|+..|+.++.+++
T Consensus 430 ~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 430 VIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 9998888889999999999999999999999999998887766
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=329.28 Aligned_cols=396 Identities=18% Similarity=0.240 Sum_probs=279.0
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhh------HHHHHHHHHHhhhhhh
Q 012646 25 CKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAAN------LAMLLTGRILLGVGIG 98 (459)
Q Consensus 25 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~ 98 (459)
.+.+..+.+++.+.+.++..++++++|+++||+|||+++..+.+++.++.++++++++ ++.++++|+++|++.|
T Consensus 51 ~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 130 (502)
T TIGR00887 51 GPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIG 130 (502)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHh
Confidence 3566778899999999999999999999999999999999999999999999988865 7899999999999999
Q ss_pred hhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccc---------------------cccchhHHHHHhh
Q 012646 99 FGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQK---------------------LETWGWRLSLGLA 157 (459)
Q Consensus 99 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~---------------------~~~~gwr~~f~~~ 157 (459)
...+....+++|++|+++|++++++.+....+|.++++.++..... ...++||+.|.+.
T Consensus 131 ~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~ 210 (502)
T TIGR00887 131 GDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFG 210 (502)
T ss_pred hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHH
Confidence 9999999999999999999999999999999999998887532211 1124799999999
Q ss_pred HHHHHHHHHhhhccCCChhhHHhhCCHH-HHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCc---hhHH
Q 012646 158 AAPALMMTVGGILLPETPNSLIERGKKV-EGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRN---RPQL 233 (459)
Q Consensus 158 ~~~~~~~~~~~~~~~es~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 233 (459)
++++++..+..+++||||+|+..+++.+ ++++.+++.+..+..+.. ++.++.+++++..+.+++++++++. .++.
T Consensus 211 ~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 289 (502)
T TIGR00887 211 AVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEP-DEVEKASTAVEVPKASWSDFFTHFFKWRHGKH 289 (502)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCc-ccccchhccccchhhhHHHHHHHHhhhHHHHH
Confidence 9988888777888999999998887764 466656655433211110 1111111111111235667665322 1122
Q ss_pred HHHHHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHH------------HHHHHHHHHHHHhHHHHHHHhhcCCchhhh
Q 012646 234 VMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLY------------SSAMTGAVLASSTLISIATVDKLGRRALLI 301 (459)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 301 (459)
.+......+.....+.....+.|.++++.|++....+. ......++.+++.++.++++||+|||+.+.
T Consensus 290 ~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~ 369 (502)
T TIGR00887 290 LLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQL 369 (502)
T ss_pred HHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHH
Confidence 22222222323333345566788888888886543221 233445567778899999999999999988
Q ss_pred hhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHH
Q 012646 302 SGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLF 381 (459)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 381 (459)
.+..+..+++.++..... ............+....++.+..++.+.+.+|.+|++.|+++.|+.+..+++
T Consensus 370 ~~~~~~~~~~~~l~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~ 439 (502)
T TIGR00887 370 MGFFILTVLFFVLGFAYN----------HLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKA 439 (502)
T ss_pred HHHHHHHHHHHHHHHHHH----------hcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhh
Confidence 877777766655554321 0001111122222223334455666678889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc----------hh-HHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHH
Q 012646 382 FTFVIAQIFLTLLCSF----------KF-GIFLFFAGWVTIMTIFVYFFLPETKGVPIEEMI 432 (459)
Q Consensus 382 g~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (459)
+++++|.+.+.+.+.. ++ ..++++++++.+ +.+.++++||+++++++|.+
T Consensus 440 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~i~~~~lpEt~~~~leei~ 500 (502)
T TIGR00887 440 GAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFL-GILFTLLIPETKGKSLEELS 500 (502)
T ss_pred HHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHH-HHHHheEeccCCCCCHHhhh
Confidence 9999999999988742 22 234444444444 44455778999998877653
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=320.92 Aligned_cols=404 Identities=28% Similarity=0.503 Sum_probs=294.8
Q ss_pred CCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHH------------hhHHHHHHH
Q 012646 22 NNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAA------------ANLAMLLTG 89 (459)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~------------~~~~~l~~~ 89 (459)
.+++++++.+.+++.+.+.++..++++++|+++||+|||++++.+.+++.++.+.++++ +.++.+++.
T Consensus 47 ~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 126 (479)
T PRK10077 47 NLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIY 126 (479)
T ss_pred cccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHH
Confidence 44568999999999999999999999999999999999999999999999998888763 335678899
Q ss_pred HHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhcc------ccccchhHHHHHhhHHHHHH
Q 012646 90 RILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQ------KLETWGWRLSLGLAAAPALM 163 (459)
Q Consensus 90 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~------~~~~~gwr~~f~~~~~~~~~ 163 (459)
|+++|++.|...+...++++|++|+++|++++++.+.+..+|.++++.++.... .....|||+.|++.+++.++
T Consensus 127 R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~ 206 (479)
T PRK10077 127 RIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALL 206 (479)
T ss_pred HHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887643221 12346899999998888887
Q ss_pred HHHhhhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhh
Q 012646 164 MTVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQ 243 (459)
Q Consensus 164 ~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (459)
..+..+++||+|+++..+++.+++++..++..+.++.....++..+....++. ..+..+. ..............+.
T Consensus 207 ~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~ 282 (479)
T PRK10077 207 FLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLDHGRK---TGGKLLM-FGVGVIVIGVMLSVFQ 282 (479)
T ss_pred HHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhh---hhhhhcc-hhHHHHHHHHHHHHHH
Confidence 77667779999999988888888777777665544322222111111110000 0011111 0111112222223333
Q ss_pred hhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcC
Q 012646 244 ILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFG 323 (459)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (459)
...++....++.|.+.++.|.+...........++..+++.++.++++||+|||+.+..+..+..++.+.+.....
T Consensus 283 ~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~---- 358 (479)
T PRK10077 283 QFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY---- 358 (479)
T ss_pred HHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh----
Confidence 3444556677888888889998887787888888999999999999999999999999988888887766654321
Q ss_pred CCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH------hhc
Q 012646 324 PNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLL------CSF 397 (459)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~------~~~ 397 (459)
.............++..+++..+.|..+.+++|.+|++.|+++.|+.+..++++..+++.+++.+. ++.
T Consensus 359 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~ 433 (479)
T PRK10077 359 -----TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHF 433 (479)
T ss_pred -----cCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhc
Confidence 011122233344444555555556777788999999999999999999999999999988776554 344
Q ss_pred hhH-HHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHhcc
Q 012646 398 KFG-IFLFFAGWVTIMTIFVYFFLPETKGVPIEEMILLWRKH 438 (459)
Q Consensus 398 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (459)
++. .+......+.+..++.+++.||+++++.+|.++..+++
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 475 (479)
T PRK10077 434 HNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPE 475 (479)
T ss_pred cCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhc
Confidence 433 34444545555556666678899988888776665443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=326.19 Aligned_cols=402 Identities=16% Similarity=0.187 Sum_probs=298.8
Q ss_pred hhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 012646 10 HDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTG 89 (459)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (459)
+........+...++++++..+.+++.++++++.+++++++|+++||+|||+++++++++.+++.++++++++++.++++
T Consensus 182 d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~ 261 (742)
T TIGR01299 182 EVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFC 261 (742)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33344555566677899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccc-----------cccchhHHHHHhhH
Q 012646 90 RILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQK-----------LETWGWRLSLGLAA 158 (459)
Q Consensus 90 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~-----------~~~~gwr~~f~~~~ 158 (459)
|++.|++.++..+...++++|++|+++|++.++++.+++.+|.++++.++..... ....+||+.+++.+
T Consensus 262 R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~ 341 (742)
T TIGR01299 262 RLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCA 341 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999877533221 11247999999999
Q ss_pred HHHHHHHHhhhccCCChhhHHhhCCHHHHHHHHHHHhCCchhh----HHH---HHHHHHHHh------hccCC-------
Q 012646 159 APALMMTVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVN----AEY---QDMVDASEL------ANSIK------- 218 (459)
Q Consensus 159 ~~~~~~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~------~~~~~------- 218 (459)
+++++.+++.+++||||+|+..+++.+++.+.+++++..+... ... ++.+..... +++.+
T Consensus 342 lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (742)
T TIGR01299 342 FPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCF 421 (742)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcch
Confidence 8888887777889999999999999999999999998765321 100 000000000 00000
Q ss_pred -----------cchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHhHHHHHHhc-------------------------
Q 012646 219 -----------HPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSM------------------------- 262 (459)
Q Consensus 219 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 262 (459)
.+++++++.+.++..+ .+.+..++....++.+..|.|.++++.
T Consensus 422 ~~~~~~~~~~~~~~~~lf~~~~~~~tl-~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (742)
T TIGR01299 422 VRALSEGGGIWGNFLRCFNPEVREITI-KLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFT 500 (742)
T ss_pred hhhhhhhhhHHHHHHHHcCccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccc
Confidence 1244455554444444 444455666667888999999775331
Q ss_pred -----------------CC-----C----------------C--------------------------------------
Q 012646 263 -----------------GF-----K----------------G-------------------------------------- 266 (459)
Q Consensus 263 -----------------g~-----~----------------~-------------------------------------- 266 (459)
|+ + .
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (742)
T TIGR01299 501 LENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNK 580 (742)
T ss_pred hhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccC
Confidence 00 0 0
Q ss_pred --------------chhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchh
Q 012646 267 --------------DASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSF 332 (459)
Q Consensus 267 --------------~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (459)
........+..++.+++.++.++++||+|||+++..+.++.+++++++.+.. .
T Consensus 581 ~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~------------s- 647 (742)
T TIGR01299 581 EGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGN------------S- 647 (742)
T ss_pred CccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc------------c-
Confidence 0113345566788999999999999999999999888888777776655431 1
Q ss_pred hhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 012646 333 SILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIM 412 (459)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (459)
....++..++.+++.+.. .+..+.+++|.+|++.|++++|+.+..+++|++++|.+.+.+.+.. ....+.+.+++.++
T Consensus 648 ~~~ll~~~~l~g~~~~~~-~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~-~~~pf~i~a~~lll 725 (742)
T TIGR01299 648 ESAMIALLCLFGGLSIAA-WNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT-KAAPILFASAALAC 725 (742)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHH
Confidence 222233333334433333 3445688899999999999999999999999999999999887654 33444445555555
Q ss_pred HHHHHhccCCCCCCC
Q 012646 413 TIFVYFFLPETKGVP 427 (459)
Q Consensus 413 ~~~~~~~~~~~~~~~ 427 (459)
+.++..++||++++.
T Consensus 726 ~~ll~~~LPET~~~~ 740 (742)
T TIGR01299 726 GGLLALKLPDTRGQV 740 (742)
T ss_pred HHHHHHhCCCCcccc
Confidence 666666779887654
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=309.38 Aligned_cols=408 Identities=37% Similarity=0.656 Sum_probs=340.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 012646 30 QGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLS 109 (459)
Q Consensus 30 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 109 (459)
.+.+++.+...++.++++++.|+++|++|||+.++++.+++.++.+++++++|+++++++|+++|+|.|........+++
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s 168 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS 168 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence 46699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccCCChhhHHhhCCHHHHHH
Q 012646 110 EMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKVEGRR 189 (459)
Q Consensus 110 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~es~~~l~~~~~~~~~~~ 189 (459)
|..|++.||...+..+....+|..++..++...... ..+||..+.+..+++++..+..+++||||+|+.++++.+++++
T Consensus 169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~-~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~ 247 (513)
T KOG0254|consen 169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV-YAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKR 247 (513)
T ss_pred hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC-CccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHH
Confidence 999999999999999999999999997764433322 1589999999999999888887889999999999999999999
Q ss_pred HHHHHhCCc--hhhHHHHHHHHHHH--h-hccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHhHHHHHHhcCC
Q 012646 190 VLEKIRGTK--EVNAEYQDMVDASE--L-ANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGF 264 (459)
Q Consensus 190 ~~~~~~~~~--~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 264 (459)
.++++++.+ +.+.+.++.+.... . ..+.+..+.+++++...++..+...+..+.+..++....+|.+.+++..|.
T Consensus 248 ~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~ 327 (513)
T KOG0254|consen 248 SLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGL 327 (513)
T ss_pred HHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCC
Confidence 999999843 33333333331111 1 111222466777666777788889999999999999999999999999888
Q ss_pred CCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHH
Q 012646 265 KGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFV 344 (459)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (459)
+... .......++...++..++.++.||+|||++++.+...+.++.+++............ ......+..+...+++.
T Consensus 328 ~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v 405 (513)
T KOG0254|consen 328 KSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPN-SSKGAGWLAIVFLCLFI 405 (513)
T ss_pred CCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCC-cccchhHHHHHHHHHHH
Confidence 7554 566777788889999999999999999999999999999999888776543221110 12244667788888888
Q ss_pred HHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHHHHH-HHHhccCC
Q 012646 345 LAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFK-FGIFLFFAGWVTIMTI-FVYFFLPE 422 (459)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~ 422 (459)
..+..++.++++.+.+|.+|.+.|+++.++....+++.+.+....+....+..+ ...++.+.+++.+... ..++++||
T Consensus 406 ~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pE 485 (513)
T KOG0254|consen 406 FSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPE 485 (513)
T ss_pred HHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEccc
Confidence 999999999999999999999999999999999999999888888777777665 5677777777777777 78899999
Q ss_pred CCCCCHHHHHHHHhcccc
Q 012646 423 TKGVPIEEMILLWRKHWF 440 (459)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~ 440 (459)
+++++.+|.++..++...
T Consensus 486 Tkg~sleei~~~~~~~~~ 503 (513)
T KOG0254|consen 486 TKGLTLEEINELFEEGIK 503 (513)
T ss_pred CCCCcHHHHHHHHHcCCc
Confidence 999999999887766543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=309.61 Aligned_cols=387 Identities=18% Similarity=0.269 Sum_probs=282.5
Q ss_pred cccccCCcccCC---chhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 012646 17 KHAHENNYCKYD---NQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILL 93 (459)
Q Consensus 17 ~~~~~~~~~~~s---~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 93 (459)
..+...+|++++ +.+.++..+++.++..+++++.|+++||+|||++++++.++.+++.++++++++++.+++.|++.
T Consensus 111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~ 190 (505)
T TIGR00898 111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLV 190 (505)
T ss_pred ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 345667889998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccCC
Q 012646 94 GVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPE 173 (459)
Q Consensus 94 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e 173 (459)
|++.+...+....++.|++|+++|+++.++...+..+|.++++.+++... +||+.|++.+++.++..+..+++||
T Consensus 191 G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-----~wr~~~~~~~i~~~~~~~~~~~~~e 265 (505)
T TIGR00898 191 GMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP-----DWRWLQLAVSLPTFLFFLLSWFVPE 265 (505)
T ss_pred HhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999998853322 3999999999988887777788999
Q ss_pred ChhhHHhhCCHHHHHHHHHHHhCCchhhHH--HHHHH-HHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHH
Q 012646 174 TPNSLIERGKKVEGRRVLEKIRGTKEVNAE--YQDMV-DASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINS 250 (459)
Q Consensus 174 s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (459)
+|+|+..+++.+++.+.+++..+.+..... ..+.. ++...+++.+.+.+++++++..+...+......+....
T Consensus 266 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---- 341 (505)
T TIGR00898 266 SPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAF---- 341 (505)
T ss_pred ChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHH----
Confidence 999999999999988887776544322111 11111 11111112234677777776655554444333332221
Q ss_pred HHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccc
Q 012646 251 ILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSK 330 (459)
Q Consensus 251 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (459)
..+..+......+.+ ........++..+++.++.+++.||+|||+.+..+.++.+++.+++.... .
T Consensus 342 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~-----------~ 407 (505)
T TIGR00898 342 SYYGLVLDLGNLGGN---IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP-----------V 407 (505)
T ss_pred HHHHHhccccccCCC---hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC-----------C
Confidence 112222233334443 23445566788889999999999999999999888777777766554431 1
Q ss_pred hhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 012646 331 SFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVT 410 (459)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (459)
...+.......+...+....+ +..+.+.+|.+|++.|+++.|+.+..+.+|++++|.+.+ +.+ .+....+.+.+.+.
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~~~~~~~~~~~~~ 484 (505)
T TIGR00898 408 DLYFLRTALAVLGKFGITSAF-QMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE-KWLFLPLVLFGGLA 484 (505)
T ss_pred CchHHHHHHHHHHHHHHHHHH-HHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-HHHhhHHHHHHHHH
Confidence 111222333333333333333 344678899999999999999999999999999999998 433 33333444444444
Q ss_pred HHHHHHHhccCCCCCCCHH
Q 012646 411 IMTIFVYFFLPETKGVPIE 429 (459)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~ 429 (459)
+++.+..+++||+++++++
T Consensus 485 ~~~~~~~~~lpet~~~~l~ 503 (505)
T TIGR00898 485 LLAGILTLFLPETKGVPLP 503 (505)
T ss_pred HHHHHHHHcCcCCCCCCCC
Confidence 4455556678888877654
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=305.98 Aligned_cols=386 Identities=14% Similarity=0.189 Sum_probs=259.2
Q ss_pred hhhhhhhhhhcccccCCcccCCchh-hHH-----HHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHH
Q 012646 7 KFFHDVYLKKKHAHENNYCKYDNQG-LAA-----FTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAA 80 (459)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~s~~~-~~~-----~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~ 80 (459)
+++|........+...++++.+.++ .++ +.++.++++.++++++|+++||+|||+++..+++++++++++++++
T Consensus 28 ~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~ 107 (490)
T PRK10642 28 EWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLI 107 (490)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555556666533322 122 2577889999999999999999999999999999999999999999
Q ss_pred hhHHH--------HHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhcc------ccc
Q 012646 81 ANLAM--------LLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQ------KLE 146 (459)
Q Consensus 81 ~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~------~~~ 146 (459)
+|++. ++++|+++|++.|+.++...++++|++|+++|+++.++...+..+|..+++.+..... ...
T Consensus 108 ~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~ 187 (490)
T PRK10642 108 PSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFL 187 (490)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhc
Confidence 99874 8899999999999999999999999999999999999999888888888876532111 123
Q ss_pred cchhHHHHHhhHHHHHHHHHhhhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhc
Q 012646 147 TWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILE 226 (459)
Q Consensus 147 ~~gwr~~f~~~~~~~~~~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (459)
.+|||+.|++.++++++.+++...+||+|+|...+++.++..+ +...++.+.++++.++
T Consensus 188 ~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~ 246 (490)
T PRK10642 188 DWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR---------------------EGLQDGPKVSFKEIAT 246 (490)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc---------------------ccccccccCCHHHHHH
Confidence 5799999999887777666666678999987543221111000 0000112335566654
Q ss_pred cCchhHHHHHHHHHHhhhhcchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhH
Q 012646 227 RRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGI 305 (459)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 305 (459)
+ ..+....... ..+.....+.....|.|.++++ +|++..+.........++.+++.++.|+++||+|||+.+..+..
T Consensus 247 ~-~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~ 324 (490)
T PRK10642 247 K-HWRSLLTCIG-LVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSV 324 (490)
T ss_pred H-hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3 2232332222 2222334455667788888754 79888777777777888899999999999999999998877665
Q ss_pred HHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHH
Q 012646 306 QMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFV 385 (459)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 385 (459)
...+....+.... .............+.+.+.+...+.. ..+..|.+|++.|+++.|+.+....+++.+
T Consensus 325 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~g~~-~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~ 393 (490)
T PRK10642 325 ALFVLAIPAFILI----------NSNVIGLIFAGLLMLAVILNCFTGVM-ASTLPAMFPTHIRYSALAAAFNISVLVAGL 393 (490)
T ss_pred HHHHHHHHHHHHH----------hCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCccchHHHHHHHHHHHHHHHH
Confidence 4333322222111 00111222222233333333222223 455678999999999999877778888889
Q ss_pred HHHHHHHHHhhch-hHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 012646 386 IAQIFLTLLCSFK-FGIFLFFAGWVTIMTIFVYFFLPETKGV 426 (459)
Q Consensus 386 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (459)
+|.+.+++.+..+ +.....+..+..+++++..+++||++++
T Consensus 394 ~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~ 435 (490)
T PRK10642 394 TPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANR 435 (490)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 9999999887644 3333333334444455555666876554
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=299.87 Aligned_cols=399 Identities=36% Similarity=0.640 Sum_probs=291.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHh---hHHHHHHHHHHhhhhhhhhhhh
Q 012646 27 YDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAA---NLAMLLTGRILLGVGIGFGNQA 103 (459)
Q Consensus 27 ~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~ 103 (459)
.+..+.+++.+.+.++..++++++|+++||+|||++++.+.+++.++.+++.+.. +++.+++.|+++|++.+...+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~ 147 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASAL 147 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhH
Confidence 4589999999999999999999999999999999999999999999999986653 4558999999999999999999
Q ss_pred hhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHh-hhccccccchhHHHHHhhHHHHHHHHHhhhccCCChhhHHhhC
Q 012646 104 VPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMIN-YGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERG 182 (459)
Q Consensus 104 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~-~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~es~~~l~~~~ 182 (459)
...++.|++|+++|++++++.+.+..+|..+++.++ .........+||+.|++.++..++..+..+++||+|++...++
T Consensus 148 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 227 (481)
T TIGR00879 148 VPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKG 227 (481)
T ss_pred HHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcC
Confidence 999999999999999999999999999999999994 1144445578999999977777766666778899999887777
Q ss_pred CHHHHHHHHHHHhCCchhhHHHHHH----H-HHHHhhccCCcchHHHhccCc--hhHHHHHHHHHHhhhhcchHHHHHhH
Q 012646 183 KKVEGRRVLEKIRGTKEVNAEYQDM----V-DASELANSIKHPFRNILERRN--RPQLVMAIFMPMFQILTGINSILFYA 255 (459)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (459)
+.++.++..++....++.+.+..+. . ....+.+..+..+.+.++..+ .++.++...+..+..........++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (481)
T TIGR00879 228 RVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYS 307 (481)
T ss_pred ChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHH
Confidence 7766665555544333222111110 0 000111111222344443222 34455555555555555556677888
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhH
Q 012646 256 PVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSIL 335 (459)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (459)
|.+.++.|++..+.+.......++.+++.++.+++.||++||+.+..+..+..++.+++........ .. ........
T Consensus 308 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~ 384 (481)
T TIGR00879 308 PTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFV-TG--SSKSSGNV 384 (481)
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhccc-CC--cccchhHH
Confidence 9888889999988888999999999999999999999999999988887776666665553221100 00 00011333
Q ss_pred HHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH-HHHHH
Q 012646 336 VVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWV-TIMTI 414 (459)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 414 (459)
.+....++..+++.+..+....+..|.+|++.|+++.|+.+...+++++++|.+.+.+.++.++...+...+++ .+..+
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i 464 (481)
T TIGR00879 385 AIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLI 464 (481)
T ss_pred HHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHH
Confidence 34444555556666666776778799999999999999999999999999999999999887765544444444 44444
Q ss_pred HHHhccCCCCCCCH
Q 012646 415 FVYFFLPETKGVPI 428 (459)
Q Consensus 415 ~~~~~~~~~~~~~~ 428 (459)
+.+++.+|+++++.
T Consensus 465 ~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 465 FVYFFLPETKGRTL 478 (481)
T ss_pred HHheecccCCCCCh
Confidence 55556677665543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=280.76 Aligned_cols=389 Identities=13% Similarity=0.092 Sum_probs=290.4
Q ss_pred hhhhhhhhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhH
Q 012646 4 EFQKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANL 83 (459)
Q Consensus 4 f~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~ 83 (459)
+...|+-|-..+...+.+.++.++|.+|+|++.+.+++.|.++.++.|.++||.++|+.+..++++.++.++++++++|.
T Consensus 38 Ya~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~ 117 (448)
T COG2271 38 YAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSL 117 (448)
T ss_pred HHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHH
Confidence 44567778788888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHH
Q 012646 84 AMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALM 163 (459)
Q Consensus 84 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~ 163 (459)
+.+.+..+++|..+|..+|.+...+..|++++|||+..++++.+.++|..+.|++........+.+||..|++.++++++
T Consensus 118 ~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaii 197 (448)
T COG2271 118 FLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAII 197 (448)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999885324555556899999999999988
Q ss_pred HHHhh-hccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHH-HHhhccCCcchHHHh-ccCchhHHHHHHHHH
Q 012646 164 MTVGG-ILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDA-SELANSIKHPFRNIL-ERRNRPQLVMAIFMP 240 (459)
Q Consensus 164 ~~~~~-~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 240 (459)
..+.. +..+|+|+..- .++.++..++..+. +++++++..+.++++ +...+.+.++.+.+.
T Consensus 198 val~~~~~~rd~Pqs~G-----------------LP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a 260 (448)
T COG2271 198 VALILLFLLRDRPQSEG-----------------LPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALA 260 (448)
T ss_pred HHHHHHHHhCCCccccC-----------------CCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHH
Confidence 76554 55788884221 11111111111111 111111113344433 333344456667776
Q ss_pred HhhhhcchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhc--CCchhhhhhhHHHHHHHHHHHHH
Q 012646 241 MFQILTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKL--GRRALLISGGIQMITCQVIVSII 317 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~~~~~~~~ 317 (459)
.++....-..+..|.|.|+.+ .|++...+.+....+-.++++|++++||++||+ |||.+..+.+.+.....++....
T Consensus 261 ~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~ 340 (448)
T COG2271 261 NVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWL 340 (448)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHc
Confidence 776777788899999988776 999999999999999999999999999999997 56665544433333333333322
Q ss_pred HhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHH-HHHHHHHHHHHHHhh
Q 012646 318 LGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLF-FTFVIAQIFLTLLCS 396 (459)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~~~~~~~ 396 (459)
. +..+.+...+++...++.. .+..-+.-....|..|.+..|++.|+...++++ |...+....|++.|.
T Consensus 341 ~----------~~~~~~l~~~~l~~iGf~I-yGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~ 409 (448)
T COG2271 341 A----------PNGSYLLDAILLFIIGFLI-YGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT 409 (448)
T ss_pred C----------CCccHHHHHHHHHHHHHHH-hhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec
Confidence 1 1122232233222222222 222223345567999999999999999999999 999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcc
Q 012646 397 FKFGIFLFFAGWVTIMTIFVYFFL 420 (459)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~ 420 (459)
+||...+++..++.+++.+++...
T Consensus 410 ~gW~g~Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 410 WGWDGGFIVLSIAALLAILLLLPV 433 (448)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHH
Confidence 888776666666665555554443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=273.98 Aligned_cols=357 Identities=17% Similarity=0.182 Sum_probs=279.5
Q ss_pred hhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 012646 13 YLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRIL 92 (459)
Q Consensus 13 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 92 (459)
......+++.+|+|+|..+.|+..|.|.+++++++++...+.||+.||++++..+.++.++++++++++||+.++++|++
T Consensus 31 v~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~ 110 (394)
T COG2814 31 VPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARAL 110 (394)
T ss_pred HHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34456777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhh-hcc
Q 012646 93 LGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGG-ILL 171 (459)
Q Consensus 93 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~ 171 (459)
.|+..|..++...++..+..|+++|++++++...+..++.++|.++ +...-+.+|||..|++.+..+++..+.. ..+
T Consensus 111 ~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPL--Gt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~l 188 (394)
T COG2814 111 AGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPL--GTFLGQLFGWRATFLAIAVLALLALLLLWKLL 188 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999 6777778899999999999999887655 457
Q ss_pred CCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHH
Q 012646 172 PETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSI 251 (459)
Q Consensus 172 ~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (459)
| |+. ..++.+.+.++.++..+++.....+....+.....+..+
T Consensus 189 P--~~~-----------------------------------~~~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~f 231 (394)
T COG2814 189 P--PSE-----------------------------------ISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALY 231 (394)
T ss_pred C--Ccc-----------------------------------CCCCCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhH
Confidence 7 210 011112233333333333334444444444444455566
Q ss_pred HHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccch
Q 012646 252 LFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKS 331 (459)
Q Consensus 252 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (459)
+|..|.+.+..|++.+..++....++++.++|..++|++.|| +.|+.+.....++.+....+.+.. .
T Consensus 232 tYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~------------~ 298 (394)
T COG2814 232 TYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTG------------A 298 (394)
T ss_pred HhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc------------c
Confidence 666677766799999999999999999999999999999999 888888777777777766665542 2
Q ss_pred hhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 012646 332 FSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTI 411 (459)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (459)
+.+.......++++......... ....++ .-++.+..+.+++....++|..++..+.|.+.|+.++.....++++..+
T Consensus 299 ~~~~~~~~~~~wg~a~~~~~~~~-~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~ 376 (394)
T COG2814 299 SPALALALLFLWGFAFSPALQGL-QTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLL 376 (394)
T ss_pred hHHHHHHHHHHHHHHhhhhhhHH-HHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 23333333333333322221111 233334 2357899999999999999999999999999999998888888888887
Q ss_pred HHHHHHhccCCC
Q 012646 412 MTIFVYFFLPET 423 (459)
Q Consensus 412 ~~~~~~~~~~~~ 423 (459)
.+.++.+...+.
T Consensus 377 ~a~~~~~~~~~~ 388 (394)
T COG2814 377 LALLLALLSARK 388 (394)
T ss_pred HHHHHHHHHHhc
Confidence 777776655443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=342.72 Aligned_cols=401 Identities=36% Similarity=0.670 Sum_probs=318.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHh---hHHHHHHHHHHhhhhhhhhhhhh
Q 012646 28 DNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAA---NLAMLLTGRILLGVGIGFGNQAV 104 (459)
Q Consensus 28 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~ 104 (459)
+..+.++..+...+|..+|+++.|.++||+|||+.++.+.++..+++++.++++ +++.+.++|+++|++.|...+..
T Consensus 44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~ 123 (451)
T PF00083_consen 44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVS 123 (451)
T ss_pred hHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 445689999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccc-cchhHHHHHhhHHHHHHHHHhhhccCCChhhHHhhCC
Q 012646 105 PLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLE-TWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGK 183 (459)
Q Consensus 105 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~-~~gwr~~f~~~~~~~~~~~~~~~~~~es~~~l~~~~~ 183 (459)
..++.|..|+++|++..++.+.+..+|.+++..++....... ..+||+.+++.++++++..+..+++||||+|+..++|
T Consensus 124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~ 203 (451)
T PF00083_consen 124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGR 203 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccc
Confidence 999999999999999999999999999999988754332222 2569999999999998888878889999999999999
Q ss_pred HHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCc-hhHHHHHHHHHHhhhhcchHHHHHhHHHHHHhc
Q 012646 184 KVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRN-RPQLVMAIFMPMFQILTGINSILFYAPVLFQSM 262 (459)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (459)
.+|+++.+++.++.+..+++.++..++.++.++.+..++++++.+. +++....+.+..+....+.....++.+.+.+..
T Consensus 204 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~ 283 (451)
T PF00083_consen 204 DEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENA 283 (451)
T ss_pred ccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999776655444444433333333333355667776644 455556566666666666667778888888887
Q ss_pred CCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHH
Q 012646 263 GFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICL 342 (459)
Q Consensus 263 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (459)
+.+.. ........+...++.+++.++.||+|||+++..+.....++...+...... ... .+.......+....+
T Consensus 284 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~i~~~~l 357 (451)
T PF00083_consen 284 GISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFL--GVS--SSSWWSILSIVFLAL 357 (451)
T ss_pred ccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccc--ccc--cccccccccceeeee
Confidence 77666 334455567777888888899999999999998888877776666411000 000 000113334444455
Q ss_pred HHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHHHHHHHHhccC
Q 012646 343 FVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFK-FGIFLFFAGWVTIMTIFVYFFLP 421 (459)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 421 (459)
....++.++.+..+.+.+|.+|++.|+++.|+....+++++.+++.+...+.+..+ ...+..+++++.+..++.++++|
T Consensus 358 ~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lp 437 (451)
T PF00083_consen 358 FFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLP 437 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEe
Confidence 55666667788888899999999999999999999999999999999988887777 67777778888888888899999
Q ss_pred CCCCCCHHHHHHH
Q 012646 422 ETKGVPIEEMILL 434 (459)
Q Consensus 422 ~~~~~~~~~~~~~ 434 (459)
|+++++++|.+++
T Consensus 438 ET~g~~l~ei~~~ 450 (451)
T PF00083_consen 438 ETKGKTLEEIQEM 450 (451)
T ss_pred eCCCCCHHHHHhh
Confidence 9999999998764
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=285.26 Aligned_cols=379 Identities=15% Similarity=0.148 Sum_probs=264.0
Q ss_pred hhhhhhhhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhH
Q 012646 4 EFQKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANL 83 (459)
Q Consensus 4 f~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~ 83 (459)
|.-+|.|+.......+.+++|+|+++.+.|++.+.+++++++++++.|+++||+|||+++..++++++++++++++++|+
T Consensus 17 ~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
T TIGR02332 17 FIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGP 96 (412)
T ss_pred HHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 45677888888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccc----cccchhHHHHHhhHH
Q 012646 84 AMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQK----LETWGWRLSLGLAAA 159 (459)
Q Consensus 84 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~----~~~~gwr~~f~~~~~ 159 (459)
+.+++.|+++|++.+...+....++.|++|+++|++++++++.+.++|.+++++++..... .+..|||+.|++.++
T Consensus 97 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~ 176 (412)
T TIGR02332 97 ESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGF 176 (412)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998543321 123689999999888
Q ss_pred HHHHHHH-hhhccCCChhh---HHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHH
Q 012646 160 PALMMTV-GGILLPETPNS---LIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVM 235 (459)
Q Consensus 160 ~~~~~~~-~~~~~~es~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (459)
++++..+ ..+++||+|+. +.++ +.+...+..+......++.+ +..++.+...++.++....+ .++
T Consensus 177 ~~l~~~~~~~~~~~~~p~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~ 245 (412)
T TIGR02332 177 PSVILGVMTWFWLDDSPDKAKWLDEE----DKKALKEMIDNDQLTLEQPE------GAFAHAAMPQRSMLREIFTP-AIM 245 (412)
T ss_pred HHHHHHHHHhhccCCCcccCCCCCHH----HHHHHHHHHHhccccccccc------cccccccccHHHHHHHhcCh-HHH
Confidence 8776644 44567998842 2111 11111111110000000000 00000011111112211112 234
Q ss_pred HHHHHHhhhhcchHHHHHhHHHHHHhc--CCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhh-hhhHHHHHHHH
Q 012646 236 AIFMPMFQILTGINSILFYAPVLFQSM--GFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLI-SGGIQMITCQV 312 (459)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-~~~~~~~~~~~ 312 (459)
...+..++....+..+..|.|.+++++ |++..+++.......++.+++.++.++++||+++|+... .......++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~- 324 (412)
T TIGR02332 246 LYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW- 324 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-
Confidence 444444555556677888999999874 667788888899999999999999999999999776533 3322222222
Q ss_pred HHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 012646 313 IVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLT 392 (459)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 392 (459)
.+.... ......+....+...+.. ...+..+....|.+|++.|+++.|+.+..+++|++++|.+.|.
T Consensus 325 ~~~~~~------------~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~ 391 (412)
T TIGR02332 325 LLASAT------------DHNLIQLLGIIMASMGSF-SAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGI 391 (412)
T ss_pred HHHHhc------------CCHHHHHHHHHHHHHHhh-hhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 111110 111111111122111111 1122333455678999999999999999999999999999999
Q ss_pred HHhhch-hHHHHHHHH
Q 012646 393 LLCSFK-FGIFLFFAG 407 (459)
Q Consensus 393 ~~~~~~-~~~~~~~~~ 407 (459)
+.+..+ |...+.++.
T Consensus 392 i~~~~g~~~~~~~~~~ 407 (412)
T TIGR02332 392 LKDATGSFNSGLWFVA 407 (412)
T ss_pred ccccCCCCchhHHHHH
Confidence 999875 554444333
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=282.08 Aligned_cols=356 Identities=15% Similarity=0.183 Sum_probs=254.4
Q ss_pred hhhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 012646 9 FHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLT 88 (459)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 88 (459)
++........+..++++|+|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++++++++.+++
T Consensus 32 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (426)
T PRK12307 32 FDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTL 111 (426)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34444444555667889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhh
Q 012646 89 GRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGG 168 (459)
Q Consensus 89 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~ 168 (459)
+|+++|++.+...+....++.|++|+++|+++.++...+..+|.++++.+ .....+..+||+.|++..+..++...+.
T Consensus 112 ~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l--~~~l~~~~~w~~~f~i~~~~~~~~~~~~ 189 (426)
T PRK12307 112 SRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYF--MPSFAEAYGWRAAFFVGLLPVLLVIYIR 189 (426)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHH--HHHHcccCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888 4444456789999988655444333333
Q ss_pred hccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcch
Q 012646 169 ILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGI 248 (459)
Q Consensus 169 ~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (459)
...||++++..++.+. .++.. ....+..+.++++.++++..+........ .+......
T Consensus 190 ~~~p~~~~~~~~~~~~------------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 247 (426)
T PRK12307 190 ARAPESKEWEEAKLSG------------KGKHS---------QSAWSVFSLSMKGLFNRAQFPLTLCVFIV-LFSIFGAN 247 (426)
T ss_pred HHCCCChHHHHhhhhc------------ccccc---------ccchhhhhHHHHHHHhhchHHHHHHHHHH-HHHHHHHH
Confidence 3356665432111000 00000 00000011234555655544333322222 22222233
Q ss_pred HHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccc
Q 012646 249 NSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQEL 328 (459)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (459)
.....+.|.++++.|+++.+.+.......++.+++.++.+++.||++||+....+.....+....+....
T Consensus 248 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~---------- 317 (426)
T PRK12307 248 WPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIP---------- 317 (426)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc----------
Confidence 3456677888888899888889888889999999999999999999999988777665554443332210
Q ss_pred cchhhhHHHHHHHHHHHHH-hhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHH
Q 012646 329 SKSFSILVVVVICLFVLAF-GWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGI 401 (459)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 401 (459)
..... .....+++... ..+..+....++.|.+|++.|+++.|+.+....+++.++|.+.|.+.+..++..
T Consensus 318 --~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~ 388 (426)
T PRK12307 318 --QDNYL-LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGA 388 (426)
T ss_pred --cccHH-HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHH
Confidence 11111 11122222221 112223334566899999999999999999999999999999999999887544
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=280.48 Aligned_cols=368 Identities=17% Similarity=0.197 Sum_probs=244.9
Q ss_pred hhhhhhhhhhhcccccCCccc---CCchhhHHHHH---HHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHH
Q 012646 6 QKFFHDVYLKKKHAHENNYCK---YDNQGLAAFTS---SLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAA 79 (459)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~---~s~~~~~~~~s---~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~ 79 (459)
-+++|....+...+...++++ .+..+.+...+ ..+++..++++++|+++||+|||+++..+.++++++++++++
T Consensus 33 ~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~ 112 (432)
T PRK10406 33 VEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIAC 112 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhh
Confidence 456677777777777777763 55555444444 444555599999999999999999999999999999999999
Q ss_pred HhhHH--------HHHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccc------c
Q 012646 80 AANLA--------MLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQK------L 145 (459)
Q Consensus 80 ~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~------~ 145 (459)
++++. .+++.|+++|++.|+.++...++++|++|+++|+++.++.+.+...|.++++.+...... .
T Consensus 113 ~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 192 (432)
T PRK10406 113 LPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAEL 192 (432)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 88764 689999999999999999999999999999999999999998888888888765322111 1
Q ss_pred ccchhHHHHHhhHHHHHHHHHhhhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHh
Q 012646 146 ETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNIL 225 (459)
Q Consensus 146 ~~~gwr~~f~~~~~~~~~~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (459)
..+|||+.|++.++++++...+...+||+|++..+ . ++++.++++++
T Consensus 193 ~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~-----------------------------~----~~~~~~~~~l~ 239 (432)
T PRK10406 193 REWGWRIPFALGAVLAVVALWLRRQLDETSQQETR-----------------------------A----LKEAGSLKGLW 239 (432)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHh-----------------------------h----hcccccHHHHH
Confidence 24699999999888887766655667887632100 0 00122455555
Q ss_pred ccCchhHHHHHHHHHHhhhhcchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhh
Q 012646 226 ERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGG 304 (459)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 304 (459)
+++. .+.......+.....+.....|.|.++++ +|++..+.+.......+...++..+.|+++||++||+.+....
T Consensus 240 ~~~~---~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~ 316 (432)
T PRK10406 240 RNRR---AFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFG 316 (432)
T ss_pred hhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 4332 22222222222233345566778887754 8998888888888878888888899999999999998776655
Q ss_pred HHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHH-HH
Q 012646 305 IQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLF-FT 383 (459)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~ 383 (459)
.+..+....+..... ........+....+.....+. ..+..+.+.+|.+|++.|+++.|+.+..++. .+
T Consensus 317 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g 386 (432)
T PRK10406 317 SLAALFTVPILSALQ---------NVSSPYAAFGLVMCALLIVSF-YTSISGILKAEMFPAQVRALGVGLSYAVANALFG 386 (432)
T ss_pred HHHHHHHHHHHHHHH---------cCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHH
Confidence 443333221211110 001111111111111112221 1223356778999999999999999988775 34
Q ss_pred HHHHHHHHHHHhhch-hHHHHHHHHHHHHHHHHHHhcc
Q 012646 384 FVIAQIFLTLLCSFK-FGIFLFFAGWVTIMTIFVYFFL 420 (459)
Q Consensus 384 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 420 (459)
...|.+.+.+ +..+ +...+.+.++..+++.+..+++
T Consensus 387 ~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 387 GSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred hHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 4577777754 4444 4444444555555555554443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=291.85 Aligned_cols=385 Identities=10% Similarity=-0.015 Sum_probs=264.0
Q ss_pred hhhhhhhhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHH----
Q 012646 4 EFQKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAA---- 79 (459)
Q Consensus 4 f~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~---- 79 (459)
+.-.|.+|...+...+...+|+|+++.+.|++.+.+.+++++++++.|+++||+|||+++..++++++++.+..++
T Consensus 38 ~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~ 117 (467)
T PRK09556 38 YLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGS 117 (467)
T ss_pred HHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhc
Confidence 3455667777777778888999999999999999999999999999999999999999999998888887777665
Q ss_pred -HhhHHHHHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhcccc-ccchhHHHHHhh
Q 012646 80 -AANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKL-ETWGWRLSLGLA 157 (459)
Q Consensus 80 -~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~-~~~gwr~~f~~~ 157 (459)
+++++.+++.|+++|++.+...+...++++||+|+++|+++++++..+.++|.++++++....... ...+||..|.+.
T Consensus 118 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~ 197 (467)
T PRK09556 118 GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFP 197 (467)
T ss_pred ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHH
Confidence 589999999999999999999999999999999999999999999999999999998884322211 112699999888
Q ss_pred HHHHHHHHHhh-hccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHH-----HhccCchh
Q 012646 158 AAPALMMTVGG-ILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRN-----ILERRNRP 231 (459)
Q Consensus 158 ~~~~~~~~~~~-~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 231 (459)
++++++..+.. ++.+++|+....++ .++ . ..+.. ..+. +..++.+.+..+ .++++
T Consensus 198 g~~~~~~~i~~~~~~~~~p~~~~~~~-~~~---~---~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~l~~~--- 258 (467)
T PRK09556 198 SIIALIIGFIGLRYGSDSPEELGWGK-AEE---I---FGEPI--SEED-------KETESTDMTKWQIFVEYVLKNP--- 258 (467)
T ss_pred HHHHHHHHHHHHHhCCCChhhcCCCC-hhh---c---ccCcc--chhh-------hccccccCcHHHHHHHHHHcCh---
Confidence 88777665444 44577663211100 000 0 00000 0000 000000111112 23222
Q ss_pred HHHHHHHHHHhhhhcchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHH
Q 012646 232 QLVMAIFMPMFQILTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITC 310 (459)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 310 (459)
.++...+..++..........|.|.++++ +|++..+++.......++.+++.++.|+++||++||+..........++
T Consensus 259 -~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~ 337 (467)
T PRK09556 259 -VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALII 337 (467)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 23334444444444455677888988755 8999999999998899999999999999999999988766544333332
Q ss_pred HHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHH-HHHHHHHH
Q 012646 311 QVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLF-FTFVIAQI 389 (459)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~ 389 (459)
...+.... ..+.....+..++.+.... +..........|.+|++.++++.|+.+..+++ |+.++|.+
T Consensus 338 ~~~~~~~~-----------~~~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~ 405 (467)
T PRK09556 338 FTLGVYQH-----------ATSEYMYLASLFALGFLVF-GPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVG 405 (467)
T ss_pred HHHHHHHh-----------cCcHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhh
Confidence 22211110 0112222222222222211 11111124556999999999999999999997 77999999
Q ss_pred HHHHHh------------hchhHHHHHHHHHHHHHHHHHHhcc
Q 012646 390 FLTLLC------------SFKFGIFLFFAGWVTIMTIFVYFFL 420 (459)
Q Consensus 390 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (459)
.|.+.| ..+|...+.+..++.+++.+..+.+
T Consensus 406 ~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 406 LGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred HHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 4567666666666666655555543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=279.51 Aligned_cols=366 Identities=16% Similarity=0.116 Sum_probs=265.4
Q ss_pred hhhhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHH
Q 012646 8 FFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLL 87 (459)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~ 87 (459)
+++........+...+++|+++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+++.++++++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (406)
T PRK11551 28 GLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLL 107 (406)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 34455555566677788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHh
Q 012646 88 TGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVG 167 (459)
Q Consensus 88 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~ 167 (459)
+.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+ .....+..+||+.|++.++..++..+.
T Consensus 108 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (406)
T PRK11551 108 VARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVI--GVLAAGDAAWRHIFYVGGVGPLLLVPL 185 (406)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHccccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988 444455678999999987766655443
Q ss_pred -hhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhc
Q 012646 168 -GILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILT 246 (459)
Q Consensus 168 -~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (459)
..++||+|++..++++.++. +...+..++.+..++. .......+....
T Consensus 186 ~~~~l~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 234 (406)
T PRK11551 186 LMRWLPESRAFAQAAGAGKQR------------------------------APVLRALFGEGRATAT-LLLWISYFFTLI 234 (406)
T ss_pred HHHhCCCChhHHhccCcchhh------------------------------hhhHHHHhhhhhhhHH-HHHHHHHHHHHH
Confidence 45578887543221110000 0001111111111111 111122222223
Q ss_pred chHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCc
Q 012646 247 GINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQ 326 (459)
Q Consensus 247 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (459)
.......+.|.+.++.|+++.+.+.......++.+++.++.|++.||+++|+.+..+.....++...+...
T Consensus 235 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--------- 305 (406)
T PRK11551 235 VLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA--------- 305 (406)
T ss_pred HHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 34456667888888899999999999999999999999999999999999988877555544444333221
Q ss_pred cccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhch-hHHHHHH
Q 012646 327 ELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFK-FGIFLFF 405 (459)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~ 405 (459)
.+.+.......+.+.+.. +..+....+..|.+|++.|+++.|+.+....++..++|.+.|.+.++.+ +...+..
T Consensus 306 ----~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~ 380 (406)
T PRK11551 306 ----PSFAGMLLAGFAAGLFVV-GGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGA 380 (406)
T ss_pred ----CcHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHH
Confidence 112222223333333332 2334446777899999999999999999999999999999999988754 4444444
Q ss_pred HHHHHHHHHHHHhcc
Q 012646 406 AGWVTIMTIFVYFFL 420 (459)
Q Consensus 406 ~~~~~~~~~~~~~~~ 420 (459)
...+.+.+.++.+..
T Consensus 381 ~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 381 SIPVILVAALAALLL 395 (406)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=273.51 Aligned_cols=348 Identities=12% Similarity=0.072 Sum_probs=253.7
Q ss_pred cccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q 012646 17 KHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVG 96 (459)
Q Consensus 17 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 96 (459)
..+...+++|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++..++++.+++++|++.+++.|+++|++
T Consensus 31 ~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~ 110 (390)
T PRK03545 31 LLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFA 110 (390)
T ss_pred chHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhh-hccCCCh
Q 012646 97 IGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGG-ILLPETP 175 (459)
Q Consensus 97 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~es~ 175 (459)
.+...+...+++.|++|+++|++++++...+.++|..++|++ .....+..|||+.|++.++++++..+.. ..+||.|
T Consensus 111 ~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l--~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 188 (390)
T PRK03545 111 HAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPL--GRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLP 188 (390)
T ss_pred HHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhH--HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999899999999999999999999999999999999999999 4444566799999999988877665443 3466654
Q ss_pred hhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHhH
Q 012646 176 NSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYA 255 (459)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (459)
+. +.+ ..++.++.++++..+...... ..... .......+.
T Consensus 189 ~~-----~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~ 228 (390)
T PRK03545 189 SE-----HSG-------------------------------SLKSLPLLFRRPALVSLYLLT---VVVVT-AHFTAYSYI 228 (390)
T ss_pred CC-----Ccc-------------------------------hHHHHHHHHhCcHHHHHHHHH---HHHHH-HHHHHHHHH
Confidence 10 000 001123344444322222211 11111 222233444
Q ss_pred HHHHH-hcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhh
Q 012646 256 PVLFQ-SMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSI 334 (459)
Q Consensus 256 ~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (459)
+.+.+ ..|.+..+.+.......++.+++.++.+++.||+++|... .+......+...+.... .+.+
T Consensus 229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~------------~~~~ 295 (390)
T PRK03545 229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAA------------NSEW 295 (390)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHh------------chHH
Confidence 44444 4799999999999999999999999999999999987643 33333333333222211 1222
Q ss_pred HHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 012646 335 LVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTI 414 (459)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (459)
.......+.+.+.. ...+.......+..| +.|++++|+.+...++|..++|.+.|.+.++.++...+...+.+.+++.
T Consensus 296 ~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~ 373 (390)
T PRK03545 296 HLSVLSIFWGIAIM-CIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAAL 373 (390)
T ss_pred HHHHHHHHHHHHHh-cchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH
Confidence 33333334444332 222333455567766 6789999999999999999999999999999998777776666666655
Q ss_pred HHHhccC
Q 012646 415 FVYFFLP 421 (459)
Q Consensus 415 ~~~~~~~ 421 (459)
+......
T Consensus 374 ~~~~~~~ 380 (390)
T PRK03545 374 VWSILIF 380 (390)
T ss_pred HHHHHHc
Confidence 5554433
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=276.43 Aligned_cols=374 Identities=14% Similarity=0.120 Sum_probs=259.3
Q ss_pred hhhhhhhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHH
Q 012646 5 FQKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLA 84 (459)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~ 84 (459)
..++++........+..++++|+++.+.+++.+.+.++..+++++.|.++||+|||+++..+.++.++++++++++++++
T Consensus 22 ~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 101 (405)
T TIGR00891 22 LLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYI 101 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 34455666666666777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHH
Q 012646 85 MLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMM 164 (459)
Q Consensus 85 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~ 164 (459)
.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|.++++.++.........+||+.|++.++..++.
T Consensus 102 ~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 102 TMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181 (405)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998843332222235999999877776666
Q ss_pred HHhhhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhh
Q 012646 165 TVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQI 244 (459)
Q Consensus 165 ~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (459)
.+....+||++++..++++.++.++..++..+.++.. + ...++.....++. ....+.............
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 250 (405)
T TIGR00891 182 LWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRI---A------NIVMTLAAAMVQS--AGKRWPTFVYLVVLVLFA 250 (405)
T ss_pred HHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhh---h------hhhhhhhHHhhhh--hhhhhHHHHHHHHHHHHH
Confidence 6666668888765433222221111111111110000 0 0000000011110 111111122122222222
Q ss_pred hcchHHHHHhHHHHHH-hcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcC
Q 012646 245 LTGINSILFYAPVLFQ-SMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFG 323 (459)
Q Consensus 245 ~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (459)
.........+.|.++. +.|++..+.+.......++.+++.++.+++.||++||+.+..+.....+....+...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------ 324 (405)
T TIGR00891 251 NLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI------ 324 (405)
T ss_pred HHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh------
Confidence 2222344455666654 589999999999999999999999999999999999998877665443322222111
Q ss_pred CCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhch-hHHH
Q 012646 324 PNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFK-FGIF 402 (459)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~ 402 (459)
....+...+...+.+.... ...+....++.|.+|++.|+++.|+.+....+++.++|.+.|.+.|+.| +...
T Consensus 325 ------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~ 397 (405)
T TIGR00891 325 ------GANVAVLGLGLFFQQMLVQ-GIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTA 397 (405)
T ss_pred ------CCchHHHHHHHHHHHHHHc-cchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence 0112222222222222222 2233445677899999999999999999999999999999999999888 5443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=275.76 Aligned_cols=377 Identities=14% Similarity=0.151 Sum_probs=248.6
Q ss_pred hhhhhhhhhhhhccc-ccCCcc--cCCchhhHHHH-----HHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHH
Q 012646 5 FQKFFHDVYLKKKHA-HENNYC--KYDNQGLAAFT-----SSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAAL 76 (459)
Q Consensus 5 ~~~~~~~~~~~~~~~-~~~~~~--~~s~~~~~~~~-----s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~ 76 (459)
.-|++|........+ ...+++ +.++. .+++. ++.+++..+++++.|+++||+|||++++.+.+++++++++
T Consensus 32 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~ 110 (438)
T PRK09952 32 VVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATAL 110 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 345555555443332 233333 56665 45554 3455677899999999999999999999999999999999
Q ss_pred HHHHhhHH--------HHHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccc----
Q 012646 77 NAAAANLA--------MLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQK---- 144 (459)
Q Consensus 77 ~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~---- 144 (459)
+++++++. .++++|+++|++.|..++....++.|++|+++|++..+..+.+..+|.+++..+......
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~ 190 (438)
T PRK09952 111 IGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTD 190 (438)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 99999987 588899999999999999999999999999999999999999999999888765322111
Q ss_pred --cccchhHHHHHhhHHHHHHHHHhhhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchH
Q 012646 145 --LETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFR 222 (459)
Q Consensus 145 --~~~~gwr~~f~~~~~~~~~~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (459)
...+|||+.|++.+++.++...+....||+|++..++++.++ .+.+.+..
T Consensus 191 ~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~----------------------------~~~~~~~~ 242 (438)
T PRK09952 191 EQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA----------------------------AKKRIPVI 242 (438)
T ss_pred HHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc----------------------------ccccCCHH
Confidence 124699999999888776655555567888865322211000 00011222
Q ss_pred H-HhccCchhHHHHHHHHHHhhhhcchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhh
Q 012646 223 N-ILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALL 300 (459)
Q Consensus 223 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 300 (459)
+ .+++++ .+.......+...........|.|.+.++ +|++...........++..+++.++.|+++||++||+.+
T Consensus 243 ~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~ 319 (438)
T PRK09952 243 EALLRHPG---AFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVY 319 (438)
T ss_pred HHHHHchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 2 222221 12222222222233344556677777654 788776655555566777788889999999999999988
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHH
Q 012646 301 ISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNL 380 (459)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 380 (459)
..+.++..++...+..... ..+..+..+....+.+.+.+.. .+..+++.+|.+|++.|+++.|+.+..+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~e~~p~~~r~tg~g~~~~~~~ 389 (438)
T PRK09952 320 ITGALIGTLSAFPFFMALE---------AQSIFWIVFFSIMLANIAHDMV-VCVQQPMFTEMFGASYRYSGAGVGYQVAS 389 (438)
T ss_pred HHHHHHHHHHHHHHHHHHH---------cCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCcchhHHHHhHHHHHHH
Confidence 7765554443322222110 0111222222223323333322 23346778899999999999999776654
Q ss_pred -HHHHHHHHHHHHHHhhc--hhHHHHHHHHHHHHHHHHHHhccCCC
Q 012646 381 -FFTFVIAQIFLTLLCSF--KFGIFLFFAGWVTIMTIFVYFFLPET 423 (459)
Q Consensus 381 -~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (459)
+++.++|.+.+.+.+.. ++...+.+.+++.+++.+..+..+++
T Consensus 390 ~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 390 VVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 89999999999998754 35555556666666666666666553
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=278.50 Aligned_cols=378 Identities=12% Similarity=0.061 Sum_probs=256.9
Q ss_pred hhhhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHH
Q 012646 8 FFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLL 87 (459)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~ 87 (459)
++++.......+...+++|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++.++.++.++++++++++++++.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (434)
T PRK11663 36 YFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFA 115 (434)
T ss_pred HHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34443444555666778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHH-
Q 012646 88 TGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTV- 166 (459)
Q Consensus 88 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~- 166 (459)
+.|++.|++.|...+...+++.|++|+++|++++++.+.+.++|.++++.+ .....+..|||+.|++.+++.++..+
T Consensus 116 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~--~~~l~~~~gw~~~f~~~~i~~~~~~~~ 193 (434)
T PRK11663 116 LLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLV--VGAIALHYGWRYGMMIAGIIAIVVGLF 193 (434)
T ss_pred HHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988 44445567999999998887765543
Q ss_pred hhhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhcc-CchhHHHHHHHHHHhhhh
Q 012646 167 GGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILER-RNRPQLVMAIFMPMFQIL 245 (459)
Q Consensus 167 ~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 245 (459)
..+++||+|++...+...++.++ . ++.. ++.++.+.+.++.++. ..+++.++...+..+...
T Consensus 194 ~~~~~~~~p~~~~~~~~~~~~~~-------------~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (434)
T PRK11663 194 LCWRLRDKPQAMGLPSVGEWRHD-------------A-LELA---QQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVY 256 (434)
T ss_pred HHHHcCCCHhhcCCCCccccccc-------------c-cccc---hhccccCCChhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 44557887753211110000000 0 0000 0000011122222211 111122333333333333
Q ss_pred cchHHHHHhHHHHHH-hcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhc--CCchhhh-hhhHHHHHHHHHHHHHHhhh
Q 012646 246 TGINSILFYAPVLFQ-SMGFKGDASLYSSAMTGAVLASSTLISIATVDKL--GRRALLI-SGGIQMITCQVIVSIILGLK 321 (459)
Q Consensus 246 ~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 321 (459)
.....+..|.|.+++ ++|++..+++.......++.+++.++.|++.||+ ++|+... .......+....+....
T Consensus 257 ~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~--- 333 (434)
T PRK11663 257 VVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP--- 333 (434)
T ss_pred HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc---
Confidence 344566678888875 4899999999999999999999999999999998 3333322 21111121111111110
Q ss_pred cCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHH
Q 012646 322 FGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGI 401 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 401 (459)
. .+...........+.+ .............|.+|++.|+++.|+.+...++|+.++|.+.|.+.|+.++..
T Consensus 334 -------~-~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~ 404 (434)
T PRK11663 334 -------F-ASYVMQAACFFTIGFF-VFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTG 404 (434)
T ss_pred -------c-ccHHHHHHHHHHHHHH-HhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHH
Confidence 0 1111111111111111 111111223455799999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHH
Q 012646 402 FLFFAGWVTIMTIFV 416 (459)
Q Consensus 402 ~~~~~~~~~~~~~~~ 416 (459)
.+...+++.+++.+.
T Consensus 405 ~f~~~~~~~~~~~~~ 419 (434)
T PRK11663 405 FFVVISIAAGISALL 419 (434)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666555544443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=269.54 Aligned_cols=324 Identities=13% Similarity=0.046 Sum_probs=221.9
Q ss_pred cccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q 012646 17 KHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVG 96 (459)
Q Consensus 17 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 96 (459)
..+..++|+|+|+.+.|++.+.+++++.+++++.|+++||+|||+++..+......+.+....++|++.+++.|+++|++
T Consensus 13 ~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g 92 (368)
T TIGR00903 13 VLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALG 92 (368)
T ss_pred hHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhH
Confidence 34455678899999999999999999999999999999999999887665555544443333337999999999999999
Q ss_pred hhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHh-hhccCCCh
Q 012646 97 IGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVG-GILLPETP 175 (459)
Q Consensus 97 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~~~es~ 175 (459)
.+. .+.....++|++|+++|++++++.+.+..+|.++++++ +....+..|||+.|++.++++++..++ .+++||+|
T Consensus 93 ~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~--~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 93 QPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAA--GLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred hHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 986 45666677999999999999999999999999999988 444555679999999988887766554 45689988
Q ss_pred hhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHhH
Q 012646 176 NSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYA 255 (459)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (459)
++..+ +. + .++ . .++++++++++. .+...+..++....+..+..|.
T Consensus 170 ~~~~~--~~-~-----------------~~~---~-------~~~~~~ll~~~~----~~~~~~~~~~~~~~~~~~~~wl 215 (368)
T TIGR00903 170 FQAAE--GF-G-----------------FKD---A-------VKEFGALAGRKD----LWIIGAILGFGVALFDNLAIWL 215 (368)
T ss_pred CCCCC--Cc-c-----------------hHH---H-------HHHHHHHHcChh----HHHHHHHHHHHHHHHHHHHHHH
Confidence 54210 00 0 000 0 012455665544 3444444555555667788899
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCc---hhhhh-hhHHHHHHHHHHHHHHhhhcCCCccccch
Q 012646 256 PVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRR---ALLIS-GGIQMITCQVIVSIILGLKFGPNQELSKS 331 (459)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (459)
|.++++.|++.. .+.......+.+.++ .+++.||..|| +.... ......+....+... .
T Consensus 216 p~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~-------------~ 278 (368)
T TIGR00903 216 EAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE-------------L 278 (368)
T ss_pred HHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc-------------c
Confidence 999988888754 455555555544444 57788877543 32222 222222222121111 1
Q ss_pred hhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012646 332 FSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLC 395 (459)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 395 (459)
+....+....+.+.+.. ...+..+++.+|.+|++.|+++.|+.+..+++++..+|.+.+.+..
T Consensus 279 ~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~ 341 (368)
T TIGR00903 279 NRLALFAFIGIAGLLML-PAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS 341 (368)
T ss_pred ccHHHHHHHHHHHHhhh-hhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc
Confidence 12222222222222222 2223346788999999999999999999999999999999988774
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=248.21 Aligned_cols=395 Identities=17% Similarity=0.158 Sum_probs=293.2
Q ss_pred hhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 012646 13 YLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRIL 92 (459)
Q Consensus 13 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 92 (459)
..+...+..++.++.+..|..++......|..+++..+|..+|++|||+.+.+..+...+...+.+.++|+..+++.|.+
T Consensus 96 ~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l 175 (528)
T KOG0253|consen 96 LLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRAL 175 (528)
T ss_pred HHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHH
Confidence 34445566677788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccC
Q 012646 93 LGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLP 172 (459)
Q Consensus 93 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~ 172 (459)
.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.+....+++ ..+.++||||.....+.+..+.....+++|
T Consensus 176 ~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law--~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ 251 (528)
T KOG0253|consen 176 WGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAW--GVMSNFGWRYLLFTSSTPLMFAARFLVWVY 251 (528)
T ss_pred HhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHhHHHHHHHHHhhcc
Confidence 9999999 888889999999999998877777 899999999999954 445667999999998888777788888899
Q ss_pred CChhhHHhhCCHHHHHHHHHHHhCCchhhH------------HHHHHHH----HHHhhccCCcchHHHhccCchhHHHHH
Q 012646 173 ETPNSLIERGKKVEGRRVLEKIRGTKEVNA------------EYQDMVD----ASELANSIKHPFRNILERRNRPQLVMA 236 (459)
Q Consensus 173 es~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (459)
||||++..+++++++.+.++++.+.|...- ++++..+ ..+..++......+++..+.++..+..
T Consensus 252 ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlll 331 (528)
T KOG0253|consen 252 ESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLL 331 (528)
T ss_pred cCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHH
Confidence 999999999999999999999877663211 1111000 011223334456666655554444444
Q ss_pred HHHHHhhhhcchHHHHHhHHHHHHhc---C-----------------CCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCC
Q 012646 237 IFMPMFQILTGINSILFYAPVLFQSM---G-----------------FKGDASLYSSAMTGAVLASSTLISIATVDKLGR 296 (459)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~---g-----------------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~ 296 (459)
..+.+. ....++........+.+.. + .+...-..-.....+...+|.++.++++||+||
T Consensus 332 w~iwfg-nafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGR 410 (528)
T KOG0253|consen 332 WRIWFG-NAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGR 410 (528)
T ss_pred HHHHHh-hHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcc
Confidence 443333 2222333333333333321 1 111222334566788999999999999999999
Q ss_pred chhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHH
Q 012646 297 RALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITV 376 (459)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 376 (459)
|+.+...+++..++.+++.... ......+..+..-.+...++... |.|..|++|+..|+++.|.+.
T Consensus 411 KkTMal~l~~f~iflfll~~c~-------------~rn~~tvllf~arafisg~fqva-YvYtPEVyPTavRatgvGtcS 476 (528)
T KOG0253|consen 411 KKTMALSLILFGIFLFLLTTCK-------------TRNAYTVLLFTARAFISGAFQVA-YVYTPEVYPTAVRATGVGTCS 476 (528)
T ss_pred hhHHHHHHHHHHHHHHHHHHhc-------------CcchhHHHHHHHHHHHhchheEE-EEecCcccchhhhhcchhhhh
Confidence 9999999888888877766542 12233344444455555555544 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 012646 377 AVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPETKGVP 427 (459)
Q Consensus 377 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (459)
..+++|+++.|.+. ...+...+...+++.+++++.++...++-.|+|+|+
T Consensus 477 smaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~ 526 (528)
T KOG0253|consen 477 SMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRS 526 (528)
T ss_pred hHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCC
Confidence 99999999999988 444444455566666666666666656666888775
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=273.63 Aligned_cols=388 Identities=14% Similarity=0.159 Sum_probs=270.0
Q ss_pred hhhhhhhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHH
Q 012646 5 FQKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLA 84 (459)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~ 84 (459)
+-+|+++.......+...+++|+++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 83 (399)
T TIGR00893 4 VINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYV 83 (399)
T ss_pred hHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHH
Confidence 44566666677777778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHH
Q 012646 85 MLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMM 164 (459)
Q Consensus 85 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~ 164 (459)
.+++.|++.|++.+...+....++.|++|+++|++++++......+|.++++.++ ....+..+||+.|++.++..++.
T Consensus 84 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~ 161 (399)
T TIGR00893 84 SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLV--GWILIHFSWQWAFIIEGVLGIIW 161 (399)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHH--HHHHHhCCchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999984 44445568999999988887776
Q ss_pred HHhh-hccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhh
Q 012646 165 TVGG-ILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQ 243 (459)
Q Consensus 165 ~~~~-~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (459)
.+.. ++.||+|+..... ++++.....+.... ..+..+.++..+...++.++++. .+...+..+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 226 (399)
T TIGR00893 162 GVLWLKFIPDPPQKAKWL-TEEEKYIVVGGLLA----------EQQGKGPSTPKKYQIKELLKDRR----VWGLALGQFL 226 (399)
T ss_pred HHHhhheecCCCCccccC-CHHHHhhcchhhcc----------ccccccccCCCccchHHHhcCHH----HHHHHHHHHH
Confidence 5554 4466655321100 11110000000000 00000111112223444444332 3333344444
Q ss_pred hhcchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhh-hHHHHHHHHHHHHHHhhh
Q 012646 244 ILTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISG-GIQMITCQVIVSIILGLK 321 (459)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 321 (459)
..........+.|.++++ .|.++.+.+.......++.+++.++.+++.||++||+..... .....++.+.........
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (399)
T TIGR00893 227 VNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFAT 306 (399)
T ss_pred HHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh
Confidence 444556677777877655 899888999999999999999999999999999988622111 111111111111110000
Q ss_pred cCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhch-hH
Q 012646 322 FGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFK-FG 400 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~ 400 (459)
. .....+.... ...... ...+..+....+.+|.+|++.|+++.|+.+....++..++|.+.|.+.+..+ +.
T Consensus 307 -~-----~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~ 378 (399)
T TIGR00893 307 -N-----YVNIPYAALA-LVALGF-FGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFA 378 (399)
T ss_pred -c-----cchhHHHHHH-HHHHHH-hchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchh
Confidence 0 0011222222 222222 2222456667888999999999999999999999999999999999999887 66
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012646 401 IFLFFAGWVTIMTIFVY 417 (459)
Q Consensus 401 ~~~~~~~~~~~~~~~~~ 417 (459)
..+...+++.+.+.+..
T Consensus 379 ~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 379 GALMVVAALALIGALSY 395 (399)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66655555555444443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=277.54 Aligned_cols=383 Identities=15% Similarity=0.161 Sum_probs=256.9
Q ss_pred hhhhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHH
Q 012646 8 FFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLL 87 (459)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~ 87 (459)
.++........+...+++|+|+.+.+++.+.+.+++.+++++.|+++||+|||++++.+.++.+++.++++++++++.++
T Consensus 33 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~ 112 (496)
T PRK03893 33 GFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLF 112 (496)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34455555555667788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHh
Q 012646 88 TGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVG 167 (459)
Q Consensus 88 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~ 167 (459)
+.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+ .....+..+||+.|++..+..++.++.
T Consensus 113 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~--~~~l~~~~~w~~~f~~~~~~~~~~~~~ 190 (496)
T PRK03893 113 IARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQV--YSLVVPVWGWRALFFIGILPIIFALWL 190 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998 444556679999998866555544444
Q ss_pred hhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHH-HHHH---H-HHhhccCCcchH-------------HH--hcc
Q 012646 168 GILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQ-DMVD---A-SELANSIKHPFR-------------NI--LER 227 (459)
Q Consensus 168 ~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~-~~~~~~~~~~~~-------------~~--~~~ 227 (459)
...+||++++..++++.++.++..+.....+....... .... . ..........+. .. ...
T Consensus 191 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (496)
T PRK03893 191 RKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSS 270 (496)
T ss_pred HHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhc
Confidence 45578876543322221111111111110000000000 0000 0 000000000000 00 001
Q ss_pred CchhHHHHHHHHHHhhhhcchHHHHHhHHHHHH-hcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHH
Q 012646 228 RNRPQLVMAIFMPMFQILTGINSILFYAPVLFQ-SMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQ 306 (459)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 306 (459)
...++.........+...........+.|.+++ ++|++..+.+.......++.+++.++.|++.||++||+.+..+..+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~ 350 (496)
T PRK03893 271 GKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLI 350 (496)
T ss_pred ccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 111112222222222222222234567788875 6899999999999999999999999999999999999887776554
Q ss_pred HHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHH
Q 012646 307 MITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVI 386 (459)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 386 (459)
..+..+.+... .....+ ............+.+..+....++.|.+|++.|++++|+.+....+|+.++
T Consensus 351 ~~~~~~~~~~~-----------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lg 418 (496)
T PRK03893 351 SQLLIIPVFAI-----------GGANVW-VLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALA 418 (496)
T ss_pred HHHHHHHHhhc-----------cccHHH-HHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHH
Confidence 44433322221 011111 111122221122223333445677899999999999999999999999999
Q ss_pred HHHHHHHHhhchhHHHHH
Q 012646 387 AQIFLTLLCSFKFGIFLF 404 (459)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~ 404 (459)
|.+.|.+.++.++...+.
T Consensus 419 p~l~g~l~~~~g~~~~~~ 436 (496)
T PRK03893 419 PILGALIAQRLDLGTALA 436 (496)
T ss_pred HHHHHHHhccCChHHHHH
Confidence 999999999888765443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=267.45 Aligned_cols=356 Identities=13% Similarity=0.057 Sum_probs=254.2
Q ss_pred hhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 012646 14 LKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILL 93 (459)
Q Consensus 14 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 93 (459)
.....|..++|+|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++++++|++.+++.|+++
T Consensus 28 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~ 107 (393)
T PRK09705 28 VGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLG 107 (393)
T ss_pred cchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHH
Confidence 34455667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhcccccc-chhHHHHHhhHHHHHHHHHhhhcc-
Q 012646 94 GVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLET-WGWRLSLGLAAAPALMMTVGGILL- 171 (459)
Q Consensus 94 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~-~gwr~~f~~~~~~~~~~~~~~~~~- 171 (459)
|++.+...+....++.|++| ++|+++++++..+...|..+++.++ ....++ .+||+.+.+.++..++..+..+..
T Consensus 108 Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~--~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 184 (393)
T PRK09705 108 GVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAIT--PWLVQHSETWYQTLAWWALPAVVALFAWWWQS 184 (393)
T ss_pred HhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999997 7899999999999989988888884 333333 379998877666655443333322
Q ss_pred CCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHH
Q 012646 172 PETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSI 251 (459)
Q Consensus 172 ~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (459)
++.|+ ++ +++ +....+.++++. .+...+..+.....+...
T Consensus 185 ~~~~~--------~~---------------------------~~~-~~~~~~~l~~~~----~~~l~~~~~~~~~~~~~~ 224 (393)
T PRK09705 185 AREVA--------SS---------------------------HKT-TTTPVRVVFTPR----AWTLGVYFGLINGGYASL 224 (393)
T ss_pred cCCCc--------cc---------------------------cCC-CcCCcccccCHh----HHHHHHHHHHHHHHHHHH
Confidence 22220 00 000 001111222222 122222233333455667
Q ss_pred HHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccch
Q 012646 252 LFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKS 331 (459)
Q Consensus 252 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (459)
..+.|.+++++|.+..+++.......++.++++++.+++.||.+||+....+..+..++...+... +..
T Consensus 225 ~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~-----------~~~ 293 (393)
T PRK09705 225 IAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWL-----------PLQ 293 (393)
T ss_pred HHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHc-----------cch
Confidence 778888888899999999999999999999999999999999999988887766655554433321 111
Q ss_pred hhhHHHHHHHHHHHHHhhcccccccceecccC-CccccchhhHHHHHHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHH
Q 012646 332 FSILVVVVICLFVLAFGWSWGPLGWTVPSEIF-PLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFK-FGIFLFFAGWV 409 (459)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 409 (459)
.... ...+.+.+.+... +.......+.. |++.+++..|+.+..+.+++.++|.+.|++.|+.| +...+.+..++
T Consensus 294 -~~~~--~~~l~g~g~g~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~ 369 (393)
T PRK09705 294 -LPVL--WAMVCGLGLGGAF-PLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALC 369 (393)
T ss_pred -HHHH--HHHHHHHhccchH-HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 1111 1222333333222 22233344555 46789999999999999999999999999999876 55555554444
Q ss_pred HHHHH-HHHhccCCCCCCC
Q 012646 410 TIMTI-FVYFFLPETKGVP 427 (459)
Q Consensus 410 ~~~~~-~~~~~~~~~~~~~ 427 (459)
.+... ....+.+|++++.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 370 VVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHHHHHhccccccch
Confidence 44433 3355566666543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=270.22 Aligned_cols=352 Identities=20% Similarity=0.232 Sum_probs=236.7
Q ss_pred hhhhhhhhhhhhhcccccCCcccCCchhhHHHH-HHH-----HHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHH
Q 012646 4 EFQKFFHDVYLKKKHAHENNYCKYDNQGLAAFT-SSL-----YLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALN 77 (459)
Q Consensus 4 f~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-s~~-----~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~ 77 (459)
.+-+|+|+.......+...++++.++.+.+.+. +.. +++..+++++.|+++||+|||+.++.+.++++++++++
T Consensus 24 ~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~ 103 (434)
T PRK15075 24 NFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLI 103 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Confidence 355677888888888899999999888876543 222 23335789999999999999999999999999999999
Q ss_pred HHHhhHH--------HHHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccc-----
Q 012646 78 AAAANLA--------MLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQK----- 144 (459)
Q Consensus 78 ~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~----- 144 (459)
+++++++ .++++|+++|++.+...+....+++|++|+++|++++++...+.++|..+++.++.....
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~ 183 (434)
T PRK15075 104 AFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPA 183 (434)
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 9999987 468899999999999999899999999999999999999998888888777776432211
Q ss_pred -cccchhHHHHHhhHHHHHHHHHhhhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHH
Q 012646 145 -LETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRN 223 (459)
Q Consensus 145 -~~~~gwr~~f~~~~~~~~~~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (459)
.+..|||++|++..+...+........||++++..++ .+.+.+..+++
T Consensus 184 ~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~-------------------------------~~~~~~~~~~~ 232 (434)
T PRK15075 184 QMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK-------------------------------HRPSMREIFRS 232 (434)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh-------------------------------hccccccHHHH
Confidence 2457999999986544332222222234432110000 00000111111
Q ss_pred HhccCchhHHHHHHHHHHhhhhcchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhh
Q 012646 224 ILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLIS 302 (459)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 302 (459)
..++ ++.........+.....+.....|.|.++++ +|++..+.++......++.+++.++.|+++||++||+....
T Consensus 233 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~ 309 (434)
T PRK15075 233 LAAN---WRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIA 309 (434)
T ss_pred HHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 1111 1122222222222334456677888988876 89998888888888899999999999999999999998776
Q ss_pred hhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHH-
Q 012646 303 GGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLF- 381 (459)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~- 381 (459)
+.....+.......... .............+.+.+.+ ...+..+.+..|.+|++.|+++.++.+..+..
T Consensus 310 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~ 379 (434)
T PRK15075 310 FTVLAILTAYPALSWLV---------AAPSFARMLAVELWLSFLYG-SYNGAMVVALTEVMPAEVRTAGFSLAYSLATAI 379 (434)
T ss_pred HHHHHHHHHHHHHHHHH---------cCCchHHHHHHHHHHHHHHH-HHHhhHHHHHHHHCCCCccchheeHHHHHHHHH
Confidence 54443322111111100 00111111121222223333 22233346678999999999999997666554
Q ss_pred HHHHHHHHHHHHHhhchh
Q 012646 382 FTFVIAQIFLTLLCSFKF 399 (459)
Q Consensus 382 g~~~~~~~~~~~~~~~~~ 399 (459)
++.++|.+.+.+.|+.++
T Consensus 380 ~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 380 FGGFTPAISTWLIHVTGD 397 (434)
T ss_pred HhhhHHHHHHHHHHhcCC
Confidence 588899999999998774
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=268.42 Aligned_cols=352 Identities=17% Similarity=0.120 Sum_probs=255.0
Q ss_pred hhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 012646 14 LKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILL 93 (459)
Q Consensus 14 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 93 (459)
.+...+...+++|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|++.
T Consensus 22 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (377)
T TIGR00890 22 WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLA 101 (377)
T ss_pred hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhh-ccC
Q 012646 94 GVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGI-LLP 172 (459)
Q Consensus 94 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~-~~~ 172 (459)
|++.+...+.....+.|++| ++|+++.++...+.++|..+++++. ....+..+||+.|++.++.+++..+..+ +++
T Consensus 102 g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 178 (377)
T TIGR00890 102 SAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLI--TSVINLEGVPAAFIYMGIIFLLVIVLGAFLIG 178 (377)
T ss_pred hHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHH--HHHHhcccHHHHHHHHHHHHHHHHHHHHHhee
Confidence 99999888888888999987 5799999999999999988766552 2333456899999999988877765544 455
Q ss_pred CChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHH
Q 012646 173 ETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSIL 252 (459)
Q Consensus 173 es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (459)
|+|+.. .+++ ++ .++.+...++.++++..+.... ..+..........
T Consensus 179 ~~~~~~-~~~~--------------~~--------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 225 (377)
T TIGR00890 179 YPPGQL-IKTN--------------IE--------------VSVKDYTVWEMLRTPQFWVLYL----SFFLNAVSGLLLI 225 (377)
T ss_pred cCchhc-cccC--------------cc--------------cchhhhhHHHHHcCccHHHHHH----HHHHHhHHHHHHH
Confidence 443210 0000 00 0000112234444443222221 1222222223333
Q ss_pred HhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchh
Q 012646 253 FYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSF 332 (459)
Q Consensus 253 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (459)
.+.+.+.++.|.+..+.+.......++.++++++.+++.||++||+.+..+.....++...+.... ...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 294 (377)
T TIGR00890 226 GLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP-----------MLN 294 (377)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc-----------cch
Confidence 445556677888888888889999999999999999999999999988887777666655544321 111
Q ss_pred hhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 012646 333 SILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIM 412 (459)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (459)
.........+.+...+.. .+....+..|.+|+++|+++.|+.+....+|..++|.+.|.+.++.++...+...+++.++
T Consensus 295 ~~~~~~~~~~~g~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~ 373 (377)
T TIGR00890 295 DVLFLATVALVFFTWGGT-ISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALT 373 (377)
T ss_pred hHHHHHHHHHHHHHhccc-hhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 122222223333333322 2333466789999999999999999999999999999999999988887766666655544
Q ss_pred H
Q 012646 413 T 413 (459)
Q Consensus 413 ~ 413 (459)
+
T Consensus 374 ~ 374 (377)
T TIGR00890 374 S 374 (377)
T ss_pred h
Confidence 3
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=266.41 Aligned_cols=381 Identities=14% Similarity=0.052 Sum_probs=248.7
Q ss_pred ccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHh----hHHHHHHHHHHh
Q 012646 18 HAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAA----NLAMLLTGRILL 93 (459)
Q Consensus 18 ~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~ 93 (459)
.+...++ |+++.+.+++.+.+.+++++++++.|+++||+|||++++.+.++.+++.+.+++++ +++.+++.|++.
T Consensus 52 ~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (452)
T PRK11273 52 MPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLC 130 (452)
T ss_pred hHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHH
Confidence 3445566 99999999999999999999999999999999999999999999999999888764 788899999999
Q ss_pred hhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHH-HHHHHhhhccccccchhHHHHHhhHHHHHHHHH-hhhcc
Q 012646 94 GVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIF-TANMINYGTQKLETWGWRLSLGLAAAPALMMTV-GGILL 171 (459)
Q Consensus 94 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~-~~~~~ 171 (459)
|++.+...+.....+.|++|+++|+++++++..+.++|.. .++++..... ...+||+.|++.++++++..+ ..+++
T Consensus 131 gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~--~~~gw~~~f~i~~~~~~~~~~l~~~~~ 208 (452)
T PRK11273 131 GWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMA--WFNDWHAALYMPAFAAILVALFAFAMM 208 (452)
T ss_pred HHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH--HhccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999988888888899999999999999999999999864 4555422221 224899999998887776544 44667
Q ss_pred CCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhcc-CchhHHHHHHHHHHhhhhcchHH
Q 012646 172 PETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILER-RNRPQLVMAIFMPMFQILTGINS 250 (459)
Q Consensus 172 ~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 250 (459)
||+|+....++ .++.++ +.++ ..+.+++.+.+.++.+++ ..+.+.++...+..++.......
T Consensus 209 ~~~~~~~~~~~-~~~~~~------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 271 (452)
T PRK11273 209 RDTPQSCGLPP-IEEYKN------DYPD----------DYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYG 271 (452)
T ss_pred cCCHhhcCCCC-hhhhhh------cccc----------ccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 88875321111 100000 0000 000000011122222111 11112233333333333334456
Q ss_pred HHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhc--CCchhhhh-hhHHHHHHHHHHHHHHhhhcCCCc
Q 012646 251 ILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKL--GRRALLIS-GGIQMITCQVIVSIILGLKFGPNQ 326 (459)
Q Consensus 251 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 326 (459)
...+.|.++++ .|++..+++....+..++.+++.++.|+++||+ +||..... ...+..++...+...
T Consensus 272 ~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~--------- 342 (452)
T PRK11273 272 ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLN--------- 342 (452)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHh---------
Confidence 67788888876 789988888888888899999999999999999 44433222 111112222111111
Q ss_pred cccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHH-HHHHHHHHHhhchhHHHHHH
Q 012646 327 ELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFV-IAQIFLTLLCSFKFGIFLFF 405 (459)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~ 405 (459)
...+.+.........+.... ........+..|.+|++.||++.|+.+....+++.+ +|.+.|.+.|+.++...+..
T Consensus 343 --~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~ 419 (452)
T PRK11273 343 --PAGNPTVDMACMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV 419 (452)
T ss_pred --cccChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHH
Confidence 00111112222222222111 111122345569999999999999999999888765 79999999999888777666
Q ss_pred HHHHHHHHHHHHhccCCCCCCCHHH
Q 012646 406 AGWVTIMTIFVYFFLPETKGVPIEE 430 (459)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (459)
.+.+.+++++......+.++|+.||
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (452)
T PRK11273 420 MIGGSILAVILLIVVMIGEKRHHEE 444 (452)
T ss_pred HHHHHHHHHHHHHHHhccccchHHH
Confidence 6666666666655555555444443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=260.75 Aligned_cols=345 Identities=12% Similarity=0.078 Sum_probs=242.1
Q ss_pred cccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q 012646 17 KHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVG 96 (459)
Q Consensus 17 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 96 (459)
..+...+|+|++..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|+++|++
T Consensus 25 ~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~ 104 (382)
T PRK10091 25 VLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFP 104 (382)
T ss_pred ChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 44556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHh-hhccCCCh
Q 012646 97 IGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVG-GILLPETP 175 (459)
Q Consensus 97 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~~~es~ 175 (459)
.+...+....++.|++|+++|++++++...+..+|..+++++ +....+..+||+.|++.++..++..+. ..++||.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l--~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 105 HGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPL--GTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred hHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccH--HHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999888888999999999999999999999999999999988 444455678999999988877766544 34577754
Q ss_pred hhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHhH
Q 012646 176 NSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYA 255 (459)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (459)
+. .+ .+ . ++. .+.++++. .+. .................+.
T Consensus 183 ~~----~~-~~-----------------~-------------~~~-~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~ 222 (382)
T PRK10091 183 DE----AK-GG-----------------L-------------REQ-FHFLRSPA---PWL-IFAATMFGNAGVFAWFSYI 222 (382)
T ss_pred cc----cc-cC-----------------H-------------HHH-HHHhcChH---HHH-HHHHHHHHHHHHHHHHHHH
Confidence 10 00 00 0 000 11122221 111 1111111111222223333
Q ss_pred -HHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhh
Q 012646 256 -PVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSI 334 (459)
Q Consensus 256 -~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (459)
|++.+.+|+++.+.+.......++.+++.++.+++.||+++|+.+..+..+..++.+.+.... +..+
T Consensus 223 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~------------~~~~ 290 (382)
T PRK10091 223 KPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG------------GMKT 290 (382)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH------------hhHH
Confidence 444445899999999999999999999999999999999999988887776666654443321 1122
Q ss_pred HHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHHHH
Q 012646 335 LVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCS-FKFGIFLFFAGWVTIMT 413 (459)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 413 (459)
.......+...+......+.......+..|++.++.+ ..+....+|..++|.+.|.+.|. .++...+...++..++.
T Consensus 291 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~ 368 (382)
T PRK10091 291 ASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAA 368 (382)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHH
Confidence 2222223333332222223322333444455555544 34677889999999999999986 46666665555444444
Q ss_pred HHHH
Q 012646 414 IFVY 417 (459)
Q Consensus 414 ~~~~ 417 (459)
+...
T Consensus 369 ~~~~ 372 (382)
T PRK10091 369 MSSL 372 (382)
T ss_pred HHHH
Confidence 4333
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=270.51 Aligned_cols=373 Identities=12% Similarity=-0.009 Sum_probs=267.1
Q ss_pred hhhhhhhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHH
Q 012646 5 FQKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLA 84 (459)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~ 84 (459)
+....|+.......|+..+|+|.+.++.+|+.+.+.+++.++.+++|+++||+|||++++.+.+++.++++++++++|++
T Consensus 16 ~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~ 95 (495)
T PRK14995 16 IPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTAS 95 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 44456777777777888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhhcc-CccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHH
Q 012646 85 MLLTGRILLGVGIGFGNQAVPLYLSEMA-PTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALM 163 (459)
Q Consensus 85 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~ 163 (459)
.++++|+++|++.+...+.....+.+.+ |+++|++++++......+|..+||.+ +....+..||||.|++..+++++
T Consensus 96 ~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~l--gg~l~~~~gwr~~f~i~~~~~~~ 173 (495)
T PRK14995 96 WLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLV--GGILLEHFYWGSVFLINVPIVLV 173 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhccCChHHHHHHHHHHHHH
Confidence 9999999999999999888888887765 67899999999999999999999999 56666778999999998887777
Q ss_pred HHHhh-hccCCChhhHHhhCCHHHHHHH------------HHHHhCCchhhHHHHH--------HHHHHHhhccCCcch-
Q 012646 164 MTVGG-ILLPETPNSLIERGKKVEGRRV------------LEKIRGTKEVNAEYQD--------MVDASELANSIKHPF- 221 (459)
Q Consensus 164 ~~~~~-~~~~es~~~l~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~- 221 (459)
..++. +++||+|+.. +++.+..... .+.............. .......+.+.+.+.
T Consensus 174 ~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~ 251 (495)
T PRK14995 174 VMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMI 251 (495)
T ss_pred HHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 65544 5577765321 1111111100 0000000000000000 000000011111221
Q ss_pred -HHHhccCchhHHHHHHHHHHhhhhcchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchh
Q 012646 222 -RNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRAL 299 (459)
Q Consensus 222 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 299 (459)
.++++++... ...+..+..........++.|.+++. +|+++.+++....+..++..++.++.|++.||+++|+.
T Consensus 252 ~~~lf~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~ 327 (495)
T PRK14995 252 DMRLFTHRIIL----SGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLV 327 (495)
T ss_pred CHHHhCCcccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence 3455554422 22222222333345566677878776 89999999999999999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHH
Q 012646 300 LISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVN 379 (459)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 379 (459)
+..+..+..++...+.... .....+.......+.+.+.+....+. .....+..|+++++.+.++.++..
T Consensus 328 ~~~g~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~l~G~g~g~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~ 396 (495)
T PRK14995 328 ATGGMALSALSFYGLAMTD----------FSTQQWQAWGLMALLGFSAASALLAS-TSAIMAAAPPEKAAAAGAIETMAY 396 (495)
T ss_pred HHHHHHHHHHHHHHHHHhc----------CCCchHHHHHHHHHHHHhHHHHHHHH-HHHHHhcCCHHhcchHHHHHHHHH
Confidence 8777776666655443321 11122333444555566666554444 355567889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 012646 380 LFFTFVIAQIFLTLLCS 396 (459)
Q Consensus 380 ~~g~~~~~~~~~~~~~~ 396 (459)
.+|+.+++.+.+.+.++
T Consensus 397 ~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 397 ELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998764
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=266.24 Aligned_cols=391 Identities=18% Similarity=0.180 Sum_probs=283.8
Q ss_pred CCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhh
Q 012646 22 NNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGN 101 (459)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 101 (459)
.++++.+.....+..+++++|..+|++++|+++||+|||++++.++++..++.++.++++|++.+++.|++.|++.++..
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccCCChhhHHhh
Q 012646 102 QAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIER 181 (459)
Q Consensus 102 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~es~~~l~~~ 181 (459)
.....+++|++++++|+.+..+ ......+..++++.+ ..... +||+.+++..+++++.++..++.||+|||+..+
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~--a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~ 264 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGA--AYITR--DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSK 264 (521)
T ss_pred HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHH--HHHHh--hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHc
Confidence 9999999999999999999999 555555555555553 22222 799999999999998877766677999999999
Q ss_pred CCHHHHHHHHHHHhCCc---hhhHHHH-HH---HHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHh
Q 012646 182 GKKVEGRRVLEKIRGTK---EVNAEYQ-DM---VDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFY 254 (459)
Q Consensus 182 ~~~~~~~~~~~~~~~~~---~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (459)
++.+++.+.++++...+ ....+.. .. ++......+++..+.++++.+..++......+..+.. ...++
T Consensus 265 g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~-----~~~y~ 339 (521)
T KOG0255|consen 265 GRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVF-----SLVYY 339 (521)
T ss_pred CchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHH-----hHHHH
Confidence 99999999999886543 1111111 11 1111111122345667776654333333333333211 12222
Q ss_pred H-HHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhh
Q 012646 255 A-PVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFS 333 (459)
Q Consensus 255 ~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (459)
. +......|. .........+....++....+...|+.|||.....+.....++++...+... ....
T Consensus 340 gl~~~~~~lg~---~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 406 (521)
T KOG0255|consen 340 GLSLNVSGLGG---NIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPD----------DLGG 406 (521)
T ss_pred hhhhhhhhcCc---hHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhc----------cchh
Confidence 2 222222333 3344555566688888888899999999999999999988888888877641 1111
Q ss_pred hHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 012646 334 ILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMT 413 (459)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (459)
+.......+..++.+.++... +.+.+|++|+..|..+.+.......++++++|.+...............+.....+.+
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~ 485 (521)
T KOG0255|consen 407 WLHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLG 485 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Confidence 234444444445555555555 7888999999999999999999999999999988765444222112222455566666
Q ss_pred HHHHhccCCCCCCCHHHHHHHHh
Q 012646 414 IFVYFFLPETKGVPIEEMILLWR 436 (459)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~ 436 (459)
.+...++||++.+.+.+..++.+
T Consensus 486 ~~~~~~lpet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 486 LLSLLLLPETKGKPLPGTLLDAE 508 (521)
T ss_pred HHHHhcCcccCCCCCchhHHHHH
Confidence 67779999999998876655444
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=261.92 Aligned_cols=354 Identities=16% Similarity=0.167 Sum_probs=251.1
Q ss_pred hhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHH--------hh
Q 012646 11 DVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAA--------AN 82 (459)
Q Consensus 11 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~--------~~ 82 (459)
....+..+...++++|.|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+.+.++ .+
T Consensus 32 ~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (399)
T PRK05122 32 GLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLS 111 (399)
T ss_pred HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhH
Confidence 3444555555678899999999999999999999999999999999999999999999988887766554 25
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHH
Q 012646 83 LAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPAL 162 (459)
Q Consensus 83 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~ 162 (459)
++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|.++++.+ +....+..|||+.+++..+..+
T Consensus 112 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l--~~~l~~~~g~~~~~~~~~~~~~ 189 (399)
T PRK05122 112 LLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPL--GVLLYHWGGLAGLGLLIMLLAL 189 (399)
T ss_pred HHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHH--HHHHHHcccHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999998 4455556789999888776655
Q ss_pred HHHHhhhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHh
Q 012646 163 MMTVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMF 242 (459)
Q Consensus 163 ~~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (459)
+..+.....|++++. ++ ++.+.++.+++.. .......+
T Consensus 190 ~~~~~~~~~~~~~~~---~~----------------------------------~~~~~~~~~~~~~--~~~~~~~~--- 227 (399)
T PRK05122 190 LGLLLARPRPAVPPV---KG----------------------------------ERLPFRRVLGRVW--PYGMGLAL--- 227 (399)
T ss_pred HHHHHHhcCCCCCCC---Cc----------------------------------cchhHHHHHHHHH--HHHHHHHH---
Confidence 444333323332210 00 0001111111110 00111111
Q ss_pred hhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhc
Q 012646 243 QILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKF 322 (459)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (459)
....+.....+.+.+..+.|. .+.+.......++.+++.++.+++.||+++|+.+..+..+..++...+...
T Consensus 228 -~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~----- 299 (399)
T PRK05122 228 -ASIGFGTIATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA----- 299 (399)
T ss_pred -HHHHHHHHHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-----
Confidence 111233445566666666666 344566677788889999999999999999998877776666665544432
Q ss_pred CCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHH
Q 012646 323 GPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIF 402 (459)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 402 (459)
++.+..+....+.+.+.+...... .....|..|++.|+++.|+.+....+|..+++.+.|.+.++.++...
T Consensus 300 --------~~~~~~~~~~~l~G~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 370 (399)
T PRK05122 300 --------PSPWMALIGAALTGFGFSLVFPAL-GVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSI 370 (399)
T ss_pred --------ccHHHHHHHHHHHHHhHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 122333334444555554333222 34556888999999999999999999999999999999998888777
Q ss_pred HHHHHHHHHHHHHHHhccCCCCC
Q 012646 403 LFFAGWVTIMTIFVYFFLPETKG 425 (459)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~ 425 (459)
+...+.+.+++.+.....+++++
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~ 393 (399)
T PRK05122 371 FLAAALAALLGLALTWLLYRRAP 393 (399)
T ss_pred HHHHHHHHHHHHHHHHHhccccc
Confidence 76666666666666565555443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=269.43 Aligned_cols=367 Identities=15% Similarity=0.101 Sum_probs=250.6
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHH--hhHHHHHHHHHHhhhhhhhhh
Q 012646 24 YCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAA--ANLAMLLTGRILLGVGIGFGN 101 (459)
Q Consensus 24 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~ 101 (459)
|++++..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~ 149 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS 149 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence 789999999999999999999999999999999999999999999999999887654 568889999999999999999
Q ss_pred hhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhcccccc-chhHHHHHhhHHHHHHHHHhhhc-cCCChhhHH
Q 012646 102 QAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLET-WGWRLSLGLAAAPALMMTVGGIL-LPETPNSLI 179 (459)
Q Consensus 102 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~-~gwr~~f~~~~~~~~~~~~~~~~-~~es~~~l~ 179 (459)
+....++.|++|+++|++++++...+..+|.++++++. ....+. .|||+.|++.++++++..+++++ .+|+|+...
T Consensus 150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~--~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~ 227 (465)
T TIGR00894 150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPIS--GWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP 227 (465)
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC
Confidence 99999999999999999999999999999999999994 444455 48999999999988877665544 566663211
Q ss_pred hhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHhHHHHH
Q 012646 180 ERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLF 259 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (459)
+.+++|.+. .+ +..+.++.+++.+.++++.++++. .+...+..+........+..|.|.++
T Consensus 228 -~~~~~~~~~-i~-------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~lp~~l 288 (465)
T TIGR00894 228 -CISKFEKKY-IN-------------SSLQGQKGSTRQSLPIKAIPKSLP----VWAIWFAIFGHFWLYTILPTYLPTFI 288 (465)
T ss_pred -CCCHHHHHH-HH-------------hhcccccCCCCCCCCHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111000 00 000000001112334566655443 44444555555556677778888887
Q ss_pred Hh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhh---hhHHHHHHH---HHHHHHHhhhcCCCccccchh
Q 012646 260 QS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLIS---GGIQMITCQ---VIVSIILGLKFGPNQELSKSF 332 (459)
Q Consensus 260 ~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 332 (459)
++ +|++..+.++...+..++.+++.++.|+++||+++|+.... ......++. ......... ....
T Consensus 289 ~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 360 (465)
T TIGR00894 289 SWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY--------LSAA 360 (465)
T ss_pred HHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCc
Confidence 65 89999999999999999999999999999999865432211 111111111 111111100 0011
Q ss_pred hhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc---hhHHHHHHHHHH
Q 012646 333 SILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSF---KFGIFLFFAGWV 409 (459)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 409 (459)
....+....+.+.+.+.. .+.......|..| +.+|.+.|+.+..+.+++.++|.+.|.+.+.. .+...+.+.++.
T Consensus 361 ~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~ 438 (465)
T TIGR00894 361 FYLTIIILTLANAVSSGP-LAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFV 438 (465)
T ss_pred hHHHHHHHHHHHHHhhhh-hhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHH
Confidence 222222233333322222 2222344456666 48999999999999999999999999887653 255555555555
Q ss_pred HHHHHHHHhccC
Q 012646 410 TIMTIFVYFFLP 421 (459)
Q Consensus 410 ~~~~~~~~~~~~ 421 (459)
.+++.+++....
T Consensus 439 ~~i~~i~~~~~~ 450 (465)
T TIGR00894 439 NILCVIFYLIFG 450 (465)
T ss_pred HHHHHHHeeeee
Confidence 555555554443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=252.79 Aligned_cols=337 Identities=18% Similarity=0.134 Sum_probs=243.1
Q ss_pred ccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhh
Q 012646 18 HAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGI 97 (459)
Q Consensus 18 ~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 97 (459)
.+...+++|+++.+.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|+++|++.
T Consensus 43 l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 122 (394)
T PRK10213 43 LTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLAL 122 (394)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhh
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhh-hccCCChh
Q 012646 98 GFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGG-ILLPETPN 176 (459)
Q Consensus 98 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~es~~ 176 (459)
+...+...+++.|++|+++|++++++...+.++|.+++|++ +....+.+|||+.|++.++++++..+.. ...||+|+
T Consensus 123 g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l--~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~ 200 (394)
T PRK10213 123 GGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPL--GSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPG 200 (394)
T ss_pred HHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCc
Confidence 99999999999999999999999999999999999999999 5555566799999999887776654443 33666541
Q ss_pred hHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHh-H
Q 012646 177 SLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFY-A 255 (459)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 255 (459)
+ + + +...+..+.++++..+ ...+..+...........+ .
T Consensus 201 ~-----~-~------------------------------~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 240 (394)
T PRK10213 201 E-----P-S------------------------------HQKQNTFRLLQRPGVM----AGMIAIFMSFAGQFAFFTYIR 240 (394)
T ss_pred c-----c-c------------------------------cchhHHHHHhcCHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0 0001122333333222 1111122222222233334 5
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhH
Q 012646 256 PVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSIL 335 (459)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (459)
|.+.+++|+++.+.+......+++.+++.++.+++.||.+ |+.+..+..........+.... +..+.
T Consensus 241 p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~------------~~~~~ 307 (394)
T PRK10213 241 PVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWG------------SDKIV 307 (394)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh------------hhHHH
Confidence 7777778999999999999999999999999999999954 4443333333333322222221 22333
Q ss_pred HHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 012646 336 VVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTI 411 (459)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (459)
......+.+.+++... +.....+.+..| +.++...+......++|..+++.+.|.+.|..++...+...++..+
T Consensus 308 ~~~~~~l~G~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~ 381 (394)
T PRK10213 308 ATGVAIIWGLTFALVP-VGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLML 381 (394)
T ss_pred HHHHHHHHHHHHHhhh-HHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence 3444445555554333 332345567676 4566777888888899999999999999998887666665554443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=264.39 Aligned_cols=364 Identities=12% Similarity=0.036 Sum_probs=232.7
Q ss_pred hcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 012646 16 KKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGV 95 (459)
Q Consensus 16 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 95 (459)
...+...+++|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++++++.+++.|+++|+
T Consensus 57 ~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~ 136 (476)
T PLN00028 57 PLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGF 136 (476)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33445678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhcc-------ccccchhHHHHHhhHHHHHHHHHhh
Q 012646 96 GIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQ-------KLETWGWRLSLGLAAAPALMMTVGG 168 (459)
Q Consensus 96 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~-------~~~~~gwr~~f~~~~~~~~~~~~~~ 168 (459)
+.+.. .....+++|++|+++|++++++.....++|..+++.+..... .....|||+.|++.++++++..+..
T Consensus 137 ~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~ 215 (476)
T PLN00028 137 SLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILV 215 (476)
T ss_pred HHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 98765 445668899999999999999998777777766655431110 0112589999999998887776655
Q ss_pred hccC-CChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcc
Q 012646 169 ILLP-ETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTG 247 (459)
Q Consensus 169 ~~~~-es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (459)
++++ +.|+ ++.++.++ .. ..++++....+++.++++.. +...+..+.....
T Consensus 216 ~~~~~~~p~-----~~~~~~~~-------~~------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 267 (476)
T PLN00028 216 LTLGQDLPD-----GNYRELKK-------SG------------TMPKDSFSKVLRYGVTNYRT----WILALTYGYSFGV 267 (476)
T ss_pred HHHcCcCCC-----CchhhHHh-------cC------------ccccccHHHHHHHHHcCchh----HHHHHHHHHHHHH
Confidence 5544 3331 00000000 00 00000000112333333332 2222222222222
Q ss_pred hHHHHHhHHHHHH-hcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchh----hhhhhHHHHHHHHHHHHHHhhhc
Q 012646 248 INSILFYAPVLFQ-SMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRAL----LISGGIQMITCQVIVSIILGLKF 322 (459)
Q Consensus 248 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 322 (459)
......+.|.++. ++|++..+++....+..++.++++++.|+++||++||+. .........+..+.+....
T Consensus 268 ~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~---- 343 (476)
T PLN00028 268 ELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLG---- 343 (476)
T ss_pred HHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhc----
Confidence 2345556676655 479999999999999999999999999999999986521 1111111111111111110
Q ss_pred CCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHH
Q 012646 323 GPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIF 402 (459)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 402 (459)
...+....+...++++.+...+.. ..+.+..+..| +.++++.|+.+..+.+|+.++|.+.+ ..+..++...
T Consensus 344 ------~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~ 414 (476)
T PLN00028 344 ------RANSLGAAIVVMILFSIFVQAACG-ATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETG 414 (476)
T ss_pred ------ccchHHHHHHHHHHHHHHHHHhhh-hhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhH
Confidence 001122222233333333332222 23455566554 78999999998888888888887765 1223346555
Q ss_pred HHHHHHHHHHHHHHHhccC
Q 012646 403 LFFAGWVTIMTIFVYFFLP 421 (459)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~ 421 (459)
+.+.+++.+++.++.++.+
T Consensus 415 f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 415 ISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HHHHHHHHHHHHHHHHhee
Confidence 6666666666666666554
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-32 Score=252.98 Aligned_cols=347 Identities=13% Similarity=0.101 Sum_probs=243.5
Q ss_pred hhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHH--------HhhH
Q 012646 12 VYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAA--------AANL 83 (459)
Q Consensus 12 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~--------~~~~ 83 (459)
...+..+...++++|+|..+.|++.+.+.+++.++++++|+++||+||||+++.+.+...++.+.... .+++
T Consensus 33 ~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (392)
T PRK12382 33 LPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKF 112 (392)
T ss_pred HHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHH
Confidence 34454555567889999999999999999999999999999999999999999998887776543321 3688
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHH
Q 012646 84 AMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALM 163 (459)
Q Consensus 84 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~ 163 (459)
+.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|++ +....+..|||+.+.+..+..++
T Consensus 113 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~--~~~l~~~~g~~~~~~~~~~~~~~ 190 (392)
T PRK12382 113 ALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPL--GLLLHSHFGFAALALTTMVLPLL 190 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHH--HHHHHhccChHHHHHHHHHHHHH
Confidence 9999999999999999889889999999999999999999999999999999998 44445567899887766554443
Q ss_pred HHHhhhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhh
Q 012646 164 MTVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQ 243 (459)
Q Consensus 164 ~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (459)
........||.++. + +.+.+.++..+...... . ...+
T Consensus 191 ~~~~~~~~~~~~~~-----~--------------------------------~~~~~~~~~~~~~~~~~-~-~~~l---- 227 (392)
T PRK12382 191 AWAFNGTVRKVPAH-----A--------------------------------GERPSLWSVVGLIWKPG-L-GLAL---- 227 (392)
T ss_pred HHHHHHhccCCCCC-----c--------------------------------ccCchHHHHHHHHHHhH-H-HHHH----
Confidence 33322223332210 0 00001111111111111 1 1111
Q ss_pred hhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcC
Q 012646 244 ILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFG 323 (459)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (459)
..........+.+.++++.|++ +.+.......++.+++.++.+++.||+++|+.+..+..+..++.+++...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~------ 299 (392)
T PRK12382 228 QGVGFAVIGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA------ 299 (392)
T ss_pred HHHHHhHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc------
Confidence 1122334555666677766664 34556666778888999999999999999999888777666665544332
Q ss_pred CCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 012646 324 PNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFL 403 (459)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 403 (459)
++.+.......+.+.+.+... +.......|.+|+++|+++.|+.+....++..++|.+.|.+.++.++...+
T Consensus 300 -------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~ 371 (392)
T PRK12382 300 -------PTAWVALAGAALTGAGCSLIF-PALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVF 371 (392)
T ss_pred -------ccHHHHHHHHHHHHHHHHhHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 112233333444444444333 333455678899999999999999999999999999999999998887777
Q ss_pred HHHHHHHHHHHHHHhc
Q 012646 404 FFAGWVTIMTIFVYFF 419 (459)
Q Consensus 404 ~~~~~~~~~~~~~~~~ 419 (459)
.+.+.+.+.+.+....
T Consensus 372 ~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 372 LAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6666666655555443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=258.93 Aligned_cols=360 Identities=17% Similarity=0.212 Sum_probs=254.8
Q ss_pred hhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 012646 15 KKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLG 94 (459)
Q Consensus 15 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 94 (459)
....+...+++|.++.+.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++.++..++++++.+++.|++.|
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 116 (398)
T TIGR00895 37 GFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAG 116 (398)
T ss_pred HhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHh
Confidence 33445566788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHH-HhhhccCC
Q 012646 95 VGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMT-VGGILLPE 173 (459)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~-~~~~~~~e 173 (459)
++.+...+...+++.|++|+++|++++++...+..+|..+++.+ .....+..+||+.|++.++..++.. +...++||
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~--~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (398)
T TIGR00895 117 LGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFL--AGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPE 194 (398)
T ss_pred cccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHH--HHHHhhcccceeehhhhhhHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999988 4455566789999999876555544 44466898
Q ss_pred ChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHH
Q 012646 174 TPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILF 253 (459)
Q Consensus 174 s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (459)
++++..++ +.++.++..++.......+.+. +.+++.+..+..+...+..++.+..+.... ..+..+...........
T Consensus 195 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 271 (398)
T TIGR00895 195 SIDFLVSK-RPETVRRIVNAIAPQMQAEAQS-ALPEQKATQGTKRSVFKALFQGKTARITVL-LWLLYFMLLVGVYFLTN 271 (398)
T ss_pred CChHHHhc-CHHHHHHHHHHHHHhccccccc-cccccccccchhhHHHHHHhcchhHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 88765544 3333333322222111100000 000000000011111222333322222222 22223334444556677
Q ss_pred hHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhh
Q 012646 254 YAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFS 333 (459)
Q Consensus 254 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (459)
+.|++.++.|.+..+.+.......++.+++.++.+++.||+++|+.. .......+....+.... .+.
T Consensus 272 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------~~~ 338 (398)
T TIGR00895 272 WLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTA-LLLLLGAVFAVLVGSTL------------FSP 338 (398)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH-HHHHHHHHHHHHHHHHh------------hCH
Confidence 78877788999999999999999999999999999999999988443 33333333332222211 122
Q ss_pred hHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 012646 334 ILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTL 393 (459)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 393 (459)
+......++.+.+.+... +...++..|.+|++.|+++.|+.+....+|..++|.+.|.+
T Consensus 339 ~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 339 TLLLLLGAIAGFFVNGGQ-SGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 333344444455544333 44467889999999999999999999999999999998875
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-33 Score=256.22 Aligned_cols=365 Identities=17% Similarity=0.235 Sum_probs=268.9
Q ss_pred CCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHh--hHHHHHHHHHHhhhhhhh
Q 012646 22 NNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAA--NLAMLLTGRILLGVGIGF 99 (459)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~ 99 (459)
+.++++|+.+.+++.++++.|+.+++++.|+++||+|.|+++..+.++.++++++...+. +++.+++.|++||++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 567999999999999999999999999999999999999999999999999999999875 456789999999999999
Q ss_pred hhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhcccccc-chhHHHHHhhHHHHHHHHHhhh-ccCCChhh
Q 012646 100 GNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLET-WGWRLSLGLAAAPALMMTVGGI-LLPETPNS 177 (459)
Q Consensus 100 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~-~gwr~~f~~~~~~~~~~~~~~~-~~~es~~~ 177 (459)
.+|+...+.++|.|++||++..++..++..+|.+++.++ .+...+. .||+++|++.++.+++..++++ +..|+|..
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~--sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~ 222 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPV--SGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK 222 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 999999999999999999999999999999999999988 4455555 8999999999999999877764 46777742
Q ss_pred HHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHhHHH
Q 012646 178 LIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPV 257 (459)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (459)
.+.-..+|.+. +. +.+.+...+++.+.|++++++.+. ++.+.+..++...+...+..|.|.
T Consensus 223 -h~~is~~El~~----I~----------~~k~~~~~~~~~~vP~~~i~ts~~----vwai~~~~f~~~~~~~~l~~y~Pt 283 (466)
T KOG2532|consen 223 -HPNISEKELKY----IE----------KGKSEAHVKKKPPVPYKAILTSPP----VWAIWISAFGGNWGFYLLLTYLPT 283 (466)
T ss_pred -CCCCCHHHHHH----HH----------hcccccccCCCCCCCHHHHHcCHH----HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 11111111110 00 000111111114678998887765 777777788888888999999999
Q ss_pred HHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCc--------hh-hhhhhHHHHHHHHHHHHHHhhhcCCCcc
Q 012646 258 LFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRR--------AL-LISGGIQMITCQVIVSIILGLKFGPNQE 327 (459)
Q Consensus 258 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (459)
|+++ +|++..+.|+..++..+...+..+++|.++||..+| |. -.++....+++++.+.+.
T Consensus 284 Y~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~---------- 353 (466)
T KOG2532|consen 284 YLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT---------- 353 (466)
T ss_pred HHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec----------
Confidence 9987 999999999999999999999999999999998663 11 122222333333333222
Q ss_pred ccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhh---chhHHHHH
Q 012646 328 LSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCS---FKFGIFLF 404 (459)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~ 404 (459)
+..+.+..++++.+.....+...... +.-..+. .+++.+..+|+.+....+.++++|.+.+.+..+ ..|...+.
T Consensus 354 -~~~~~~~a~~~l~~~~~~~g~~~~Gf-~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~ 430 (466)
T KOG2532|consen 354 -SDEHRLLAVILLTIAIGLSGFNISGF-YKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFL 430 (466)
T ss_pred -CCCcchHHHHHHHHHHHHcccchhhh-Hhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHH
Confidence 11222233333333222222221111 1222232 458899999999999999999999999998842 24666666
Q ss_pred HHHHHHHHHHHHHhcc
Q 012646 405 FAGWVTIMTIFVYFFL 420 (459)
Q Consensus 405 ~~~~~~~~~~~~~~~~ 420 (459)
+.+.+.+++.+.+.+.
T Consensus 431 i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 431 IAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHhchheeEe
Confidence 6666666666555544
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=250.14 Aligned_cols=360 Identities=13% Similarity=0.130 Sum_probs=252.3
Q ss_pred hhhhhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhH-HHHHHHHHHHHHHHHhhHHH
Q 012646 7 KFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIIC-GGISFLLGAALNAAAANLAM 85 (459)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~-~~~~~~~~~~~~~~~~~~~~ 85 (459)
.+-...+.+..+...++++|.|+.+.|++.+.+.++..+.+++.|+++||+||||.++. +.++..++.++++++++++.
T Consensus 10 ~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (375)
T TIGR00899 10 GIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFL 89 (375)
T ss_pred HHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 33334455556666678899999999999999999999999999999999999887654 56666777888899999999
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHH--HHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHH
Q 012646 86 LLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGL--NMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALM 163 (459)
Q Consensus 86 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~ 163 (459)
+++.|+++|.+.+...|...++..|+.|+++|++. .+....+.++|.++++.+ +....+..+||+.|++.++..++
T Consensus 90 l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~--~~~l~~~~~~~~~f~~~~~~~~~ 167 (375)
T TIGR00899 90 LLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPL--AFWLALGFGFTVMFLTAALAFVL 167 (375)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhH--HHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999988888888888889999887777754 578888889999999988 44455567899999999888776
Q ss_pred HHHhh-hccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHh
Q 012646 164 MTVGG-ILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMF 242 (459)
Q Consensus 164 ~~~~~-~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (459)
..+.. +++||+|++..+++ .+.+.++.++++..+.......+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~--- 210 (375)
T TIGR00899 168 CGVLVWLFLPSYPRGAPGAL----------------------------------TRLEVRGLLASRDTRLLFVACTL--- 210 (375)
T ss_pred HHHHHHHhCCCcccCccccc----------------------------------CcchhhhhhcCcchHHHHHHHHH---
Confidence 65554 44788763210000 00111223333332222222211
Q ss_pred hhhcchHHHHHhHHHHH-HhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhh
Q 012646 243 QILTGINSILFYAPVLF-QSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLK 321 (459)
Q Consensus 243 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (459)
..........+.|.+. +++|.++.+.+..........+++.++.+++.||++||+.+..+.....+....+...
T Consensus 211 -~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---- 285 (375)
T TIGR00899 211 -MWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD---- 285 (375)
T ss_pred -HHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH----
Confidence 1112233444556665 4589998888888777777788889999999999999998877655444333222221
Q ss_pred cCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHH
Q 012646 322 FGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGI 401 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 401 (459)
++.+.......+.+.+.+.. .+....+..|..|+ +++++.++.+...++|..++|.+.|.+.+..++..
T Consensus 286 ---------~~~~~~~~~~~~~g~~~g~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~ 354 (375)
T TIGR00899 286 ---------NSLWALLMLQLLNAIFIGIL-AGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHA 354 (375)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 12232333333334444433 23445666788875 46799999999999999999999999999888877
Q ss_pred HHHHHHHHHHHHHHHHhccC
Q 012646 402 FLFFAGWVTIMTIFVYFFLP 421 (459)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~ 421 (459)
.+...+++.+.+.+...+++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~ 374 (375)
T TIGR00899 355 VYWFAIVMLIVALFCLLLIK 374 (375)
T ss_pred HHHHHHHHHHHHHHHHheec
Confidence 77777777776666666554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-33 Score=260.46 Aligned_cols=360 Identities=14% Similarity=0.039 Sum_probs=257.8
Q ss_pred cCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHhhh
Q 012646 21 ENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAA-----AANLAMLLTGRILLGV 95 (459)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~ 95 (459)
..++++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+..+. .++++.+++.|++.|+
T Consensus 43 ~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 122 (417)
T PRK10489 43 QIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGF 122 (417)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 34556779999999999999999999999999999999999999998888877766543 4678899999999999
Q ss_pred hhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccCCCh
Q 012646 96 GIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETP 175 (459)
Q Consensus 96 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~es~ 175 (459)
+.+...+...+++.|++|+++|+++.++.....++|..+||.+ +....+..+||+.|++.++..++..+..+.+||++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (417)
T PRK10489 123 FGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPAL--GGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALP 200 (417)
T ss_pred HHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9988888889999999999999999999999999999999999 44444556899999988877777666666677754
Q ss_pred hhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHhH
Q 012646 176 NSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYA 255 (459)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (459)
+...+ + ++ ..++ .++.++..++++..+...... +... .......+.
T Consensus 201 ~~~~~--~-~~----------------~~~~----------~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~ 246 (417)
T PRK10489 201 PPPQP--R-EH----------------PLRS----------LLAGFRFLLASPVVGGIALLG----GLLT-MASAVRVLY 246 (417)
T ss_pred CCCcc--c-cc----------------chHH----------HHHHHHHHHcChHHHHHHHHH----HHHH-HHHhHHHhh
Confidence 21000 0 00 0000 011122333333322221111 1111 123455667
Q ss_pred HHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhh
Q 012646 256 PVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSI 334 (459)
Q Consensus 256 ~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (459)
|.+.++ +|.++.+.++......++.+++.++.+++.||.++++.+..+..+..++.+.+... ++.+
T Consensus 247 p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~ 313 (417)
T PRK10489 247 PALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM-------------PMWI 313 (417)
T ss_pred HHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-------------chHH
Confidence 878777 89999999999999999999999999999999777777766666555554433321 1122
Q ss_pred HHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHH-HHHHHHHHHHH
Q 012646 335 LVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIF-LFFAGWVTIMT 413 (459)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 413 (459)
...+...+.+.+.+. ..+...++..|..|++.|+++.|+.+....+|..++|.+.|.+.+..++... ...+++..+.+
T Consensus 314 ~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~ 392 (417)
T PRK10489 314 LAVLCLALFGYLSAI-SSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIG 392 (417)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHH
Confidence 233333333433332 2334456778999999999999999999999999999999999998886444 44555555666
Q ss_pred HHHHhccCCCCCCCHHH
Q 012646 414 IFVYFFLPETKGVPIEE 430 (459)
Q Consensus 414 ~~~~~~~~~~~~~~~~~ 430 (459)
++.....++.++++++|
T Consensus 393 ~~~~~~~~~~~~~~~~~ 409 (417)
T PRK10489 393 VLLLLVLGELRRFRQTP 409 (417)
T ss_pred HHHHHhccccccccccc
Confidence 66667777766655444
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=253.68 Aligned_cols=354 Identities=10% Similarity=0.012 Sum_probs=251.3
Q ss_pred hhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 012646 14 LKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILL 93 (459)
Q Consensus 14 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 93 (459)
.....++..+++|+|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|+++
T Consensus 26 ~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~ 105 (394)
T PRK03699 26 TGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVL 105 (394)
T ss_pred HhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 34445566788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccCC
Q 012646 94 GVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPE 173 (459)
Q Consensus 94 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e 173 (459)
|++.+...+...+++.|++|+++|+++++.......+|..++|.+.... ..+..+||+.|.+.+++.++..++.++ ++
T Consensus 106 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l-~~~~~gw~~~f~~~~~~~~~~~~~~~~-~~ 183 (394)
T PRK03699 106 GVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL-LARSIEWYWVYACIGLVYVAIFILTLF-SE 183 (394)
T ss_pred HHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHHHHh-cC
Confidence 9999999999999999999999999999999888999988888874221 223468999999888877665544333 22
Q ss_pred ChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHH
Q 012646 174 TPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILF 253 (459)
Q Consensus 174 s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (459)
.|+. ++++. ++ + +.. .+... ++.++...+..++.......+..
T Consensus 184 ~p~~--~~~~~--------------------------~~-~---~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 226 (394)
T PRK03699 184 FPAL--GKHAP--------------------------KA-D---KPV----AKEKW-GIGVLFLAIAALLYILAQLTFIS 226 (394)
T ss_pred Cccc--cccCc--------------------------cc-c---Ccc----ccccC-ChHHHHHHHHHHHHHHHHHHHHH
Confidence 2210 00000 00 0 000 00111 11223333333333344456778
Q ss_pred hHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchh
Q 012646 254 YAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSF 332 (459)
Q Consensus 254 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (459)
|.|.++++ +|+++.+.+.......++..++.++.+++.||+++|+.+.....+..+...++... ++
T Consensus 227 ~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~-------------~~ 293 (394)
T PRK03699 227 WVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT-------------DD 293 (394)
T ss_pred HHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc-------------CC
Confidence 88888854 89999999999999999999999999999999999988776655544433332211 11
Q ss_pred hhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 012646 333 SILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIM 412 (459)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (459)
...........+...+.. .+...+...|..| +.++...+.......+|..++|.+.|.+.+..++...+....++.++
T Consensus 294 ~~~~~~~~~~~G~~~~~~-~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~ 371 (394)
T PRK03699 294 PSHLLYAILGLGFFSSAI-YTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAV 371 (394)
T ss_pred chHHHHHHHHHHHHHHHH-HHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHH
Confidence 222222333333333322 2333345556665 44677888899999999999999999999988876665555555555
Q ss_pred HHHHHhccC
Q 012646 413 TIFVYFFLP 421 (459)
Q Consensus 413 ~~~~~~~~~ 421 (459)
+.+.....+
T Consensus 372 ~~~~~~~~~ 380 (394)
T PRK03699 372 VFVMCILLG 380 (394)
T ss_pred HHHHHHHHH
Confidence 544444443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=262.07 Aligned_cols=370 Identities=13% Similarity=0.058 Sum_probs=252.0
Q ss_pred hhhhhhhhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhH
Q 012646 4 EFQKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANL 83 (459)
Q Consensus 4 f~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~ 83 (459)
+...|+++.......+...+++|+|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 83 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSL 83 (379)
T ss_pred hhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhH
Confidence 44555666666666677788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHH-HhhhccccccchhHHHHHhhHHHHH
Q 012646 84 AMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANM-INYGTQKLETWGWRLSLGLAAAPAL 162 (459)
Q Consensus 84 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~-l~~~~~~~~~~gwr~~f~~~~~~~~ 162 (459)
+.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++. + ........+||+.|++.+++.+
T Consensus 84 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 161 (379)
T TIGR00881 84 WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLV--LFGIAELYSWHWVFIVPGIIAI 161 (379)
T ss_pred HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHH--HHHHHhcCCchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999994 4 2233345689999999887776
Q ss_pred HHHHh-hhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHH
Q 012646 163 MMTVG-GILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPM 241 (459)
Q Consensus 163 ~~~~~-~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (459)
+..+. .++.||+|+....+++.++.. ++.+. +.++.++..+..+...++.++++. ++...+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 225 (379)
T TIGR00881 162 IVSLICFLLLRDSPQSCGLPPAEEMPN---------EEPDG---DAEKKEEELTKKQIFLQYVLLNKV----LWYISLGY 225 (379)
T ss_pred HHHHHHheeeCCCccccccCccccCcc---------ccccc---ccccccccccchHHHHHHHHhcch----HHHHHHHH
Confidence 65444 455677664211110000000 00000 000000000011112233444433 22233333
Q ss_pred hhhhcchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhh
Q 012646 242 FQILTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGL 320 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
+...........+.|.++++ .|+++.+.+.......++.+++.++.+++.||..+|+...............+.....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~- 304 (379)
T TIGR00881 226 VFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL- 304 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc-
Confidence 33333445566677777654 8999999999999999999999999999999864333222222221211111111110
Q ss_pred hcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhH
Q 012646 321 KFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFG 400 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 400 (459)
. ...............+.. ..+..+....+..|.+|++.|+++.|+.+....+++.++|.+.|.+.++.++.
T Consensus 305 --~-----~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 376 (379)
T TIGR00881 305 --N-----PAANPLMDLICLFALGFL-VYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWA 376 (379)
T ss_pred --C-----cchhHHHHHHHHHHHHHH-HhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccc
Confidence 0 011122222222222222 22222333456789999999999999999999999999999999999988764
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=263.20 Aligned_cols=373 Identities=14% Similarity=0.120 Sum_probs=245.6
Q ss_pred hhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHH-HHHHh
Q 012646 15 KKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLT-GRILL 93 (459)
Q Consensus 15 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~r~l~ 93 (459)
+...+...+++|+|.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.++++++++++++++.+++ .|+++
T Consensus 39 ~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 118 (455)
T TIGR00892 39 TVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFIT 118 (455)
T ss_pred hhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34455567889999999999999999999999999999999999999999999999999999999999998865 57999
Q ss_pred hhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccCC
Q 012646 94 GVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPE 173 (459)
Q Consensus 94 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e 173 (459)
|++.+...+....++.++++ ++|+++.++...+..+|..++|++ .....+..|||+.|++.+++.++..+..+++.+
T Consensus 119 G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l--~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~ 195 (455)
T TIGR00892 119 GLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPL--NQYLFESFGWRGSFLILGGLLLHCCVCGALMRP 195 (455)
T ss_pred HhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHH--HHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99998877777888899995 789999999999999999999988 445556679999999999887766554444322
Q ss_pred ChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHH
Q 012646 174 TPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILF 253 (459)
Q Consensus 174 s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (459)
.+.... +.+.++ . +.....+.. +..+... ..++..+....+.++++. ++......+...........
T Consensus 196 ~~~~~~-~~~~~~-~---~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~ 262 (455)
T TIGR00892 196 VGPSQR-VSKSKS-K---EGLPPDGST--KKLSKKS--TAEKINRFLDFSLFTHRG----FLVYLSGNVIMFLGFFAPII 262 (455)
T ss_pred CCcccc-cccccc-c---ccCCCCCcc--ccccccc--hhhhhhhhcchHHhcCch----HHHHHHHHHHHHHHccchHH
Confidence 211000 000000 0 000000000 0000000 000000000113444433 22222223333333344556
Q ss_pred hHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhc--CCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccch
Q 012646 254 YAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKL--GRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKS 331 (459)
Q Consensus 254 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (459)
+.|.+.++.|++..+.+....+.+++.++++++.+++.||. ++|+...........+...+.... . +
T Consensus 263 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~----------~-~ 331 (455)
T TIGR00892 263 FLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL----------A-G 331 (455)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH----------h-c
Confidence 67777777899999999999999999999999999999974 333333332222221111111111 0 2
Q ss_pred hhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHH
Q 012646 332 FSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFK-FGIFLFFAGWVT 410 (459)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 410 (459)
+.+..++...+.+.+.+.. .+...+.+.|.+|+++++++.|+.+....+|+.++|.+.|.+.+..+ +...+...+++.
T Consensus 332 ~~~~~~i~~~~~G~~~g~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~ 410 (455)
T TIGR00892 332 DYTGLVIYCIFFGLSFGSV-GALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIV 410 (455)
T ss_pred hHHHHHHHHHHHHHHhchH-HHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHH
Confidence 2333334444444444433 33445677899999999999999999999999999999999988764 655555444444
Q ss_pred HHHHH
Q 012646 411 IMTIF 415 (459)
Q Consensus 411 ~~~~~ 415 (459)
+++.+
T Consensus 411 li~~~ 415 (455)
T TIGR00892 411 VSAGL 415 (455)
T ss_pred HHHHH
Confidence 44433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=256.30 Aligned_cols=362 Identities=15% Similarity=0.146 Sum_probs=254.3
Q ss_pred cccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q 012646 17 KHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVG 96 (459)
Q Consensus 17 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 96 (459)
..+...+++|.++.+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.+++.++++++.+++.|+++|++
T Consensus 32 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~ 111 (471)
T PRK10504 32 ALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVG 111 (471)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 34455677999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhh-ccCCCh
Q 012646 97 IGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGI-LLPETP 175 (459)
Q Consensus 97 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~-~~~es~ 175 (459)
.+...+...+++.|++|+++|+++.++.....++|..++|.+ ++...+..|||+.|++..+...+..+... ..|+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~--~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 189 (471)
T PRK10504 112 GAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPAL--GGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYT 189 (471)
T ss_pred hHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHH--HHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999999999999 44555567899999998877766655443 345443
Q ss_pred hhHHhhCCHHHHHHHHH---------HHhCCch--hhH-HHHH-----------HHHHHHhhccCCcchHHHhccCchhH
Q 012646 176 NSLIERGKKVEGRRVLE---------KIRGTKE--VNA-EYQD-----------MVDASELANSIKHPFRNILERRNRPQ 232 (459)
Q Consensus 176 ~~l~~~~~~~~~~~~~~---------~~~~~~~--~~~-~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (459)
. ++.+.+....... ...+.+. ... .... ...+++..++...+ .++++++....
T Consensus 190 ~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~ 265 (471)
T PRK10504 190 M---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFS-LKLFRTRTFSL 265 (471)
T ss_pred c---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccC-HHHhcccchHH
Confidence 1 1112221111000 0001000 000 0000 00000111111112 23455554332
Q ss_pred HHHHHHHHHhhhhcchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHH
Q 012646 233 LVMAIFMPMFQILTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQ 311 (459)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 311 (459)
. ....+...........+.|++++. .|.++.+.++......++.+++.++.+++.||+++|+.+..+..+..+..
T Consensus 266 ~----l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~ 341 (471)
T PRK10504 266 G----LAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVS 341 (471)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence 2 222223333445566778888875 89999999999988888899898999999999999999888777666665
Q ss_pred HHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 012646 312 VIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFL 391 (459)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~ 391 (459)
.++.... .....+.......+.+.+.+....+. .....+..|++.+++++|+.++...+|..+++.+.|
T Consensus 342 ~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g 410 (471)
T PRK10504 342 LLFMLVA----------LLGWYYLLPFVLFLQGMVNSTRFSSM-NTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAG 410 (471)
T ss_pred HHHHhcc----------ccccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 5544321 01112222222333334444333333 466678889999999999999999999999999999
Q ss_pred HHHhhchh
Q 012646 392 TLLCSFKF 399 (459)
Q Consensus 392 ~~~~~~~~ 399 (459)
.+.+..++
T Consensus 411 ~ll~~~g~ 418 (471)
T PRK10504 411 LLLGLFGQ 418 (471)
T ss_pred HHHHHhhh
Confidence 98887654
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=250.44 Aligned_cols=362 Identities=13% Similarity=0.129 Sum_probs=254.3
Q ss_pred hhhhhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHH
Q 012646 7 KFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAML 86 (459)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l 86 (459)
.+..+.+.+..+ ...+++|+|+.+.++..+.+.+++.+++++.|+++||+|||+++..+..+..++.+++.++++++.+
T Consensus 26 ~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l 104 (406)
T PRK15402 26 YIANDMIQPGML-AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQF 104 (406)
T ss_pred HhhhhhHhcchH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 333455555543 4567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHH
Q 012646 87 LTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTV 166 (459)
Q Consensus 87 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~ 166 (459)
++.|+++|++.+...+...+++.|++|+++|.+..++......+|..++|.++ ....+..+||+.|++.++..++..+
T Consensus 105 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~--~~l~~~~~w~~~~~~~~~~~~~~~~ 182 (406)
T PRK15402 105 TLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVG--AALIHVLPWRGMFVLFAALAALSFF 182 (406)
T ss_pred HHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHccCccHHHHHHHHHHHHHHH
Confidence 99999999999988888999999999999999999999888889999999884 4444556899999998888777655
Q ss_pred hh-hccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhh
Q 012646 167 GG-ILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQIL 245 (459)
Q Consensus 167 ~~-~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (459)
.. +..||+++... ++ + +..+ ..++.++.++++..+ ...+......
T Consensus 183 ~~~~~~~~~~~~~~---~~-~----------------~~~~----------~~~~~~~~~~~~~~~----~~~~~~~~~~ 228 (406)
T PRK15402 183 GLWRAMPETAGRVG---EK-L----------------SLKE----------LGRDYKLVLKNRRFV----AGALALGLVS 228 (406)
T ss_pred HHHHhCCCCCcccc---cc-c----------------cHHH----------HHHHHHHHHcCcHHH----HHHHHHHHHH
Confidence 44 44677642100 00 0 0000 011233444444322 2222222222
Q ss_pred cchHHHHHhHHHHHH-hcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCC
Q 012646 246 TGINSILFYAPVLFQ-SMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGP 324 (459)
Q Consensus 246 ~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (459)
........+.|.++. .+|+++.+.+.......++.+++.++.+++.||+++|+.+..+.....++...+......
T Consensus 229 ~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~---- 304 (406)
T PRK15402 229 LPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVI---- 304 (406)
T ss_pred HHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence 222334445666654 489998888888777788899999999999999999998888777666665555443100
Q ss_pred CccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 012646 325 NQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLF 404 (459)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 404 (459)
.....+.......+.+.+.+....+. .... ...+++++++..++.+....++..+++.+.+.+.+..+......
T Consensus 305 ----~~~~~~~~~~~~~~~g~g~~~~~~~~-~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~ 378 (406)
T PRK15402 305 ----SSHAYLWLTAGLSLYAFGIGLANAGL-YRLT-LFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNL 378 (406)
T ss_pred ----ccccHHHHHHHHHHHHHHHHHHhhhH-HHHH-hhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHH
Confidence 01122233344444444444333332 2332 23345889999999999999999999999999988777554444
Q ss_pred HHHHHHHHHHH
Q 012646 405 FAGWVTIMTIF 415 (459)
Q Consensus 405 ~~~~~~~~~~~ 415 (459)
..+++.+..++
T Consensus 379 ~~~~~~~~~~~ 389 (406)
T PRK15402 379 FNLANGLLWLL 389 (406)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-32 Score=259.32 Aligned_cols=373 Identities=15% Similarity=0.136 Sum_probs=265.1
Q ss_pred hhhhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHH
Q 012646 8 FFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLL 87 (459)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~ 87 (459)
.++........+...+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++..++.+++++++|++.++
T Consensus 15 ~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (485)
T TIGR00711 15 VLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMI 94 (485)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHH
Confidence 33455555566777888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHh
Q 012646 88 TGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVG 167 (459)
Q Consensus 88 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~ 167 (459)
+.|+++|++.+...+...+++.|++|+++|+++++++..+..+|..++|.+ +....++.+||+.|++.++++++..++
T Consensus 95 ~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~--~~~l~~~~~w~~~f~~~~~~~~~~~~~ 172 (485)
T TIGR00711 95 IFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTL--GGWIIENYHWRWIFLINVPIGIIVVVV 172 (485)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcc--HhHhccCcCceehhhhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998 555566789999999988887766554
Q ss_pred h-hccCCChhhHHhhCCHHHHHHH------------HHHHhCCchhhHHHHH-H----------HHHHHhhccCCcchHH
Q 012646 168 G-ILLPETPNSLIERGKKVEGRRV------------LEKIRGTKEVNAEYQD-M----------VDASELANSIKHPFRN 223 (459)
Q Consensus 168 ~-~~~~es~~~l~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~-~----------~~~~~~~~~~~~~~~~ 223 (459)
. +++||+++. .+++.+..... ..+....+..+..... . ....+..++.+....+
T Consensus 173 ~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (485)
T TIGR00711 173 AFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLR 250 (485)
T ss_pred HHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHH
Confidence 4 446665431 11111111000 0010111110100000 0 0000111111111234
Q ss_pred HhccCchhHHHHHHHHHHhhhhcchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhh
Q 012646 224 ILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLIS 302 (459)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 302 (459)
.++++..... .+..+..........++.|.++++ +|+++.+.+.......++.+++.++.|++.||++||+.+..
T Consensus 251 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~ 326 (485)
T TIGR00711 251 LFKYRNFTIG----CVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTI 326 (485)
T ss_pred HHcCCChHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHH
Confidence 4555443322 222222333345566678888776 89999999999999999999999999999999999998887
Q ss_pred hhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHH
Q 012646 303 GGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFF 382 (459)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 382 (459)
+..+..++...+.... . +....+.......+.+.+.+....+.. ....+..|+++++++.|+.+....+|
T Consensus 327 g~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~g 396 (485)
T TIGR00711 327 GLILYAVGFYWRAFTF----T-----PDTPFLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPHKIARGSSLSNFTRQLG 396 (485)
T ss_pred HHHHHHHHHHHHhccC----C-----CCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHhHHHHHHHHHHHHH
Confidence 7776666655544211 0 111222333344455555554444443 44457789999999999999999999
Q ss_pred HHHHHHHHHHHHhhch
Q 012646 383 TFVIAQIFLTLLCSFK 398 (459)
Q Consensus 383 ~~~~~~~~~~~~~~~~ 398 (459)
+.+++.+.+.+.++..
T Consensus 397 ~~ig~~i~g~~~~~~~ 412 (485)
T TIGR00711 397 GSIGTALITTILTNRT 412 (485)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887643
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=248.57 Aligned_cols=396 Identities=20% Similarity=0.240 Sum_probs=283.1
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHhhhhhh
Q 012646 26 KYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAA-------NLAMLLTGRILLGVGIG 98 (459)
Q Consensus 26 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~ 98 (459)
|+++.-.+.+..+..+|..+|++++|+++||+|||+++...++++.+++++++++. -.+++...|++.|+|.|
T Consensus 80 ~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIG 159 (538)
T KOG0252|consen 80 HYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIG 159 (538)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhcccc
Confidence 46777889999999999999999999999999999999999999999999888763 24789999999999999
Q ss_pred hhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccc-------------cccchhHHHHHhhHHHHHHHH
Q 012646 99 FGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQK-------------LETWGWRLSLGLAAAPALMMT 165 (459)
Q Consensus 99 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~-------------~~~~gwr~~f~~~~~~~~~~~ 165 (459)
+-+|.+.+..+|...+++||...+...+..+.|...|.+++..... ..+.-||..+-+.++++++.+
T Consensus 160 GDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~l 239 (538)
T KOG0252|consen 160 GDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVL 239 (538)
T ss_pred CCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777777777666655322111 011349999999999999999
Q ss_pred HhhhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcc---hHHHhccCchhHHHHHHHHHHh
Q 012646 166 VGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHP---FRNILERRNRPQLVMAIFMPMF 242 (459)
Q Consensus 166 ~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 242 (459)
...+.+|||+++.....++.+. ..++.......+ .++.++.....+..+.. +...+..+ .-+.+.......+
T Consensus 240 y~Rl~M~Et~~Y~al~~~~~~~--a~~d~~k~~~~~--~~~~~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WF 314 (538)
T KOG0252|consen 240 YFRLKMPETARYTALVSKKLKQ--AAGDMKKVLSVD--IEAESTAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWF 314 (538)
T ss_pred HhhhcCCcchhHHHHhhcCHhh--hhhccccccccc--cchhhccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHH
Confidence 9999999999876433322111 111111111111 11100000111111111 22222222 2234555556666
Q ss_pred hhhcchHHHHHhHHHHHHhcCCCCchhHH--------H-HHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHH
Q 012646 243 QILTGINSILFYAPVLFQSMGFKGDASLY--------S-SAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVI 313 (459)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 313 (459)
..-..++....+...++++.|+.+..... . ..+...+.++|..+...++|++|||+..+.++.++.+..+.
T Consensus 315 llDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~ 394 (538)
T KOG0252|consen 315 LLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFV 394 (538)
T ss_pred hhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHH
Confidence 66666777778888888887876654433 1 12222333446666777899999999999999998888777
Q ss_pred HHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 012646 314 VSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTL 393 (459)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 393 (459)
+..... + ........+...+..++...+.+.....+.+|.+|++.|++..|+....+-.|++++...+.++
T Consensus 395 ~~~~y~-------~--~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~ 465 (538)
T KOG0252|consen 395 IAGPYN-------Q--LENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYL 465 (538)
T ss_pred HcCCcc-------c--ccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHh
Confidence 765421 0 1123334455555566666666667788899999999999999999999999999999999999
Q ss_pred Hh-----hchhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHH
Q 012646 394 LC-----SFKFGIFLFFAGWVTIMTIFVYFFLPETKGVPIEEMILLW 435 (459)
Q Consensus 394 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (459)
.+ ..+....++..+.+.+.+.+..+++||+++++++|..++.
T Consensus 466 t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 466 TDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKSLEEISNEE 512 (538)
T ss_pred hhccCCccccchHHHHHHHHHHHHhHheeEEeecccccCHHHhcChh
Confidence 88 5566677777778888888888999999999998875443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=251.62 Aligned_cols=331 Identities=14% Similarity=0.035 Sum_probs=246.0
Q ss_pred CCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHhhhh
Q 012646 22 NNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAA-----NLAMLLTGRILLGVG 96 (459)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~r~l~G~~ 96 (459)
..+++.++.+.+++.+.+.++..+++++.|+++||+|||++++.+.++..++.++..+.+ +++.+++.|+++|++
T Consensus 26 ~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 105 (365)
T TIGR00900 26 VLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIA 105 (365)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 345688999999999999999999999999999999999999999999999999888888 999999999999999
Q ss_pred hhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhcc--CCC
Q 012646 97 IGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILL--PET 174 (459)
Q Consensus 97 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~--~es 174 (459)
.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+ +....+..|||+.|++.++..++..+..+.+ ||+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l--~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (365)
T TIGR00900 106 QAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGI--GGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPEL 183 (365)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 999999999999999999999999999999999999999999 4555556789999999887766655544433 332
Q ss_pred hhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHH-HH
Q 012646 175 PNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSI-LF 253 (459)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 253 (459)
++. ++.+. +++. . ++.++..+..++++..+...... +......... ..
T Consensus 184 ~~~----~~~~~--------------~~~~---~------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 232 (365)
T TIGR00900 184 AAS----EIQAL--------------SNAV---L------RDTREGIKFVLKNPLLRTLLLLA----LLFNLVFAPAIVA 232 (365)
T ss_pred CCc----ccccc--------------chhH---H------HHHHhHHHHHHcCcHHHHHHHHH----HHHHHHHHHHHHH
Confidence 210 00000 0000 0 00011234444444432222222 2222222223 36
Q ss_pred hHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchh
Q 012646 254 YAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSF 332 (459)
Q Consensus 254 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (459)
+.|.+.++ +|.+..+.+.......++.+++.++.+++.||.+||+.+..+.....++...+... + ++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~ 300 (365)
T TIGR00900 233 LFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT-----------P-PN 300 (365)
T ss_pred HhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh-----------c-hh
Confidence 77888776 89999999999999999999999999999999999988877665555555444332 1 11
Q ss_pred hhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhch
Q 012646 333 SILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFK 398 (459)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 398 (459)
.+...+..++.+.+.+.. .+....+..|..|++.|+++.|+.+....++..++|.+.|.+.|+.|
T Consensus 301 ~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 301 FPLFLVLWFAIGVGYGPI-NVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333344444455554433 34446778899999999999999999999999999999999988653
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-31 Score=243.60 Aligned_cols=361 Identities=12% Similarity=0.045 Sum_probs=247.3
Q ss_pred hhhhhhhhhhccccc-CCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHH-----
Q 012646 7 KFFHDVYLKKKHAHE-NNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAA----- 80 (459)
Q Consensus 7 ~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~----- 80 (459)
.|..-...+...+.. ++++|+|++|.+++.+++.++++++.++.|++.||+|.|+++..+.+++++.+++++++
T Consensus 46 ~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~ 125 (462)
T PRK15034 46 AFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPN 125 (462)
T ss_pred HHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 333333444444443 34799999999999999999999999999999999999999999999999999999987
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhcc---c-------------
Q 012646 81 ANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQ---K------------- 144 (459)
Q Consensus 81 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~---~------------- 144 (459)
+|++.+++.|++.|++ +..++.....+++|+|+++||+++++.....++|..+++++..... .
T Consensus 126 ~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~ 204 (462)
T PRK15034 126 TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQAD 204 (462)
T ss_pred CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 8999999999999998 7788999999999999999999999997666666655444321100 0
Q ss_pred cccchhHHHHHhhHHHHHHHHHhhhcc-CCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHH
Q 012646 145 LETWGWRLSLGLAAAPALMMTVGGILL-PETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRN 223 (459)
Q Consensus 145 ~~~~gwr~~f~~~~~~~~~~~~~~~~~-~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (459)
.+..+||...++..++.++..++.++. ++.|. ++.......+
T Consensus 205 g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~-------------------------------------~~~~~~~~~~ 247 (462)
T PRK15034 205 GSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS-------------------------------------SRASIADQLP 247 (462)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-------------------------------------cccCHHHHHH
Confidence 013468999888888887776655544 33220 0001112334
Q ss_pred HhccCchhHHHHHHHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhh
Q 012646 224 ILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISG 303 (459)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 303 (459)
.+|++. .+.+.+..++.+..+..+.++.|++.++ .++.........+..+...+.++++|+++||+|+++++.++
T Consensus 248 vlk~~~----~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~ 322 (462)
T PRK15034 248 VLQRLH----LWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLIN 322 (462)
T ss_pred HhCCCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHH
Confidence 555555 3334444455666677788888888766 33333333334455677888899999999999999999988
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCc------------------
Q 012646 304 GIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPL------------------ 365 (459)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------------------ 365 (459)
.+.+.++...+..... .. ...+.+.............+.+.+.+ +-++.+.+|+
T Consensus 323 ~i~~~i~~~~~~l~lp-----~~--~~~~~~~~~~~~~~l~~~~G~gngsv-fk~ip~~f~~~~~~~~~~~~~~~~~~~~ 394 (462)
T PRK15034 323 FIFMAIFSALLFLTLP-----GT--GSGNFIAFYAVFMGLFLTAGLGSGST-FQMIAVIFRQITIYRVKMKGGSDEQAQR 394 (462)
T ss_pred HHHHHHHHHHHHHHhc-----cc--cccHHHHHHHHHHHHHHHhcccchHH-HHhhHHHHhhhhhhcccccccchhHHhh
Confidence 8777766544433320 00 01122333333333334444444444 4566677764
Q ss_pred ---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHHHHHHHHh
Q 012646 366 ---ETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFK-FGIFLFFAGWVTIMTIFVYF 418 (459)
Q Consensus 366 ---~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 418 (459)
++.|.+.|+....+.+|+++.|.++|...+..+ +...+....+..++++++.+
T Consensus 395 ~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w 451 (462)
T PRK15034 395 EAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW 451 (462)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 156788999999999999999999999888765 44444444444444444433
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=247.46 Aligned_cols=352 Identities=14% Similarity=0.182 Sum_probs=240.3
Q ss_pred hhhhhhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHH
Q 012646 6 QKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAM 85 (459)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (459)
.+|-|+-..+...++.++.+|++++..|++.+.+.+.+.+++|+.|+++|||+||+++..|..+|.++.++++++..||+
T Consensus 44 mny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq 123 (493)
T KOG1330|consen 44 MNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQ 123 (493)
T ss_pred HHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHH
Confidence 35556667777888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhcccccc-chhHHHHHhhHHHHHHH
Q 012646 86 LLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLET-WGWRLSLGLAAAPALMM 164 (459)
Q Consensus 86 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~-~gwr~~f~~~~~~~~~~ 164 (459)
++++|.+.|+|.+...++++++++|.+|.++|++++++++.+..+|..+|.+.+ ...... ..|||.|+..+++++++
T Consensus 124 ~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvg--s~va~~~~~Wr~af~~~avl~vi~ 201 (493)
T KOG1330|consen 124 VLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVG--SVVASLTFWWRWAFRGSAVLGVIV 201 (493)
T ss_pred HHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEee--eeeccCccceEEEEEeehHHHHHH
Confidence 999999999999999999999999999999999999999999999999998884 333333 33999999999999988
Q ss_pred HHhh-hccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHh---ccCchhHHHHHHHHH
Q 012646 165 TVGG-ILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNIL---ERRNRPQLVMAIFMP 240 (459)
Q Consensus 165 ~~~~-~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 240 (459)
.++. ++.+|++|- ..++.. + ..+..+.....++++. +.+.. ....+.
T Consensus 202 ~~L~~~f~~eP~rg-----a~~~~~-------~-------------~~~~~~~~ts~~kDl~~l~~~~v~----v~~sl~ 252 (493)
T KOG1330|consen 202 GLLVFLFVREPERG-----ARDEVD-------G-------------ENKMVKPFTSVWKDLKVLAKIKVF----VLSSLG 252 (493)
T ss_pred HHHHHhhccCcccc-----cccccc-------c-------------CCcCCCCccchHHHHHHHHccCce----eeehHH
Confidence 7665 556665421 111100 0 0000111122222222 22221 222222
Q ss_pred HhhhhcchHHHHHhHHHHHHh----cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCc----hhhhhhhHHHHHH--
Q 012646 241 MFQILTGINSILFYAPVLFQS----MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRR----ALLISGGIQMITC-- 310 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~----~~~~~~~~~~~~~-- 310 (459)
........+.+.+|.|.+... .|++.++..++..+...++.+|.+++|.++||+.|+ ......-...+.+
T Consensus 253 ~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~ 332 (493)
T KOG1330|consen 253 IIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAP 332 (493)
T ss_pred HHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhh
Confidence 222222335566666655432 577777878888888999999999999999995331 1111111111111
Q ss_pred --HHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHH-HH
Q 012646 311 --QVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFV-IA 387 (459)
Q Consensus 311 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~-~~ 387 (459)
...+...... .....+..++++.+........+.+. .-+..|+.|++.|.++.++...+..+.+-. +|
T Consensus 333 ~s~~~L~~~~~~--------~~~s~~~~~il~~~g~~~~~~~~a~n-~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p 403 (493)
T KOG1330|consen 333 LSIPFLFLFPAF--------TSSSMIFGLILFLVGETISWFNWATN-NPIFLEVVPPSRRTTAYALDTVFEHIFGDAASP 403 (493)
T ss_pred HHHHHHHHHHhh--------hhHHHHHHHHHHHHHHHHHhcccccc-cceeeEecCcccccHHHHHHHHHHHHhccCCCc
Confidence 1111111100 11222222222222223333333333 455679999999999999998887655444 45
Q ss_pred HHHHHHHhhc
Q 012646 388 QIFLTLLCSF 397 (459)
Q Consensus 388 ~~~~~~~~~~ 397 (459)
++.|.+.|+.
T Consensus 404 ~ivGilsd~l 413 (493)
T KOG1330|consen 404 YIVGILSDKL 413 (493)
T ss_pred ceehhHHHHh
Confidence 5999988864
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=243.03 Aligned_cols=340 Identities=12% Similarity=0.049 Sum_probs=238.6
Q ss_pred cccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhh
Q 012646 19 AHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIG 98 (459)
Q Consensus 19 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 98 (459)
+...+++|.|..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|+++|++.+
T Consensus 30 p~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~ 109 (381)
T PRK03633 30 PLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCA 109 (381)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 33455789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhh-hccCCChhh
Q 012646 99 FGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGG-ILLPETPNS 177 (459)
Q Consensus 99 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~es~~~ 177 (459)
...+...+.+.+..++++|+++++.+..+.++|..+|+.++ ....+...|+..+ ..+.......... ...+|+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~--~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~- 185 (381)
T PRK03633 110 MIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLV--SKVSTELMSVLPW-VTGLVLAAILPLLFTRILNQQA- 185 (381)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH--hcccccccchHHH-HHHHHHHHHHHHHHhcccCCCC-
Confidence 98888888888999999999999999999999999999994 3333322222222 2222211111111 11222110
Q ss_pred HHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHhHHH
Q 012646 178 LIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPV 257 (459)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (459)
+++...+.++.++++..+.... ..+.....+.....+.|.
T Consensus 186 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~lp~ 225 (381)
T PRK03633 186 ------------------------------------ENHDSTSIWPMLKLRQARLGVN----GCIISGIVLGSLYGLMPL 225 (381)
T ss_pred ------------------------------------CCCCCCCHHHHHHhcchHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 0000122344444444322111 111111223445566788
Q ss_pred HHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHH
Q 012646 258 LFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVV 337 (459)
Q Consensus 258 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (459)
+.++.|.++.+.+.......++.+++++..+++.||+++|+.+..+.....++....... . ...
T Consensus 226 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~---------------~-~~~ 289 (381)
T PRK03633 226 YLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLSQ---------------A-AMA 289 (381)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhhh---------------H-HHH
Confidence 888889998888988889999999999999999999999998877766665554333210 0 111
Q ss_pred HHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q 012646 338 VVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVY 417 (459)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (459)
....+.+.+.. ...|.....+.|..|+++++...+..+...++|+.++|.+.|.+.|+.++...+...+.+.+...+..
T Consensus 290 ~~~~l~g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 290 PALFILGAAGF-TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred HHHHHHHHHHH-hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 12222222222 23344456667888888888888888888999999999999999999887666666655555554444
Q ss_pred hc
Q 012646 418 FF 419 (459)
Q Consensus 418 ~~ 419 (459)
+.
T Consensus 369 ~~ 370 (381)
T PRK03633 369 LR 370 (381)
T ss_pred Hh
Confidence 43
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-31 Score=247.94 Aligned_cols=341 Identities=21% Similarity=0.257 Sum_probs=236.6
Q ss_pred CCchhhHHHHHH-----HHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHH--------HHHHHHHHh
Q 012646 27 YDNQGLAAFTSS-----LYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLA--------MLLTGRILL 93 (459)
Q Consensus 27 ~s~~~~~~~~s~-----~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~ 93 (459)
.++.+.+.+.+. .+++..+++++.|+++||+|||+++..+.++..++.+++++++++. .+++.|+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 106 (394)
T TIGR00883 27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ 106 (394)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence 556666665543 3334457899999999999999999999999999999999998875 488899999
Q ss_pred hhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccc------cccchhHHHHHhhHHHHHHHHHh
Q 012646 94 GVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQK------LETWGWRLSLGLAAAPALMMTVG 167 (459)
Q Consensus 94 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~------~~~~gwr~~f~~~~~~~~~~~~~ 167 (459)
|++.+...+....++.|++|+++|++..++...+..+|.++++.+...... ....+||+.|++.++..++..+.
T Consensus 107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 186 (394)
T TIGR00883 107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL 186 (394)
T ss_pred HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887432211 13468999999888777666555
Q ss_pred hhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcc
Q 012646 168 GILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTG 247 (459)
Q Consensus 168 ~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (459)
....||+|++..++ +++++.+.+.++.++++.+ +... .....+.....
T Consensus 187 ~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~ 234 (394)
T TIGR00883 187 RRNLEETPVFEKAQ------------------------------EKHKKKRGPIRETLTKHRK-PFLL-GLGLVIATTTT 234 (394)
T ss_pred HHhcCCChhHHHHH------------------------------hccccccCCHHHHHHhchH-HHHH-HHHHHHHHHHH
Confidence 55677766321100 0011113344555544331 1222 22223333334
Q ss_pred hHHHHHhHHHHHH-hcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCc
Q 012646 248 INSILFYAPVLFQ-SMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQ 326 (459)
Q Consensus 248 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (459)
......+.|.+.+ ++|.+..+.+.......+..+++.++.+++.||++||+.+.....+..+....+.....
T Consensus 235 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~------- 307 (394)
T TIGR00883 235 FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL------- 307 (394)
T ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 4556677787774 58899889999899999999999999999999999998776554443333221111110
Q ss_pred cccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHH-HHHHHHHHHHHHHHHHHHhhch-hHHHHH
Q 012646 327 ELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITV-AVNLFFTFVIAQIFLTLLCSFK-FGIFLF 404 (459)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~-~~~~~~ 404 (459)
...+.+.......+.+.+.+.... ....+..|.+|++.|+++.++.. ....++..++|.+.|.+.++.+ +...+.
T Consensus 308 --~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~ 384 (394)
T TIGR00883 308 --DSGSFTLFFFLVLGLALIGGMYTG-PMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGY 384 (394)
T ss_pred --cCCchHHHHHHHHHHHHHHHHHhh-hHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHH
Confidence 111223333334444444443433 34678889999999999999854 4456788899999999999887 544444
Q ss_pred HHHHH
Q 012646 405 FAGWV 409 (459)
Q Consensus 405 ~~~~~ 409 (459)
....+
T Consensus 385 ~~~~~ 389 (394)
T TIGR00883 385 YLAAL 389 (394)
T ss_pred HHHHH
Confidence 44433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-31 Score=245.30 Aligned_cols=336 Identities=14% Similarity=0.149 Sum_probs=242.2
Q ss_pred ccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhh
Q 012646 18 HAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGI 97 (459)
Q Consensus 18 ~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 97 (459)
.+...+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+++.++++++.+++.|++.|++.
T Consensus 28 ~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 107 (385)
T TIGR00710 28 FPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGA 107 (385)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcch
Confidence 34557789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhh-hccCCChh
Q 012646 98 GFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGG-ILLPETPN 176 (459)
Q Consensus 98 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~es~~ 176 (459)
+...+...+++.|++|+++|++++++.+....+|..+++.+ .....+..+||+.|++.++..++..+.. ++.||+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 108 SAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLL--GGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLP 185 (385)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999998 4444556789999999888777665544 44676542
Q ss_pred hHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHhHH
Q 012646 177 SLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAP 256 (459)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (459)
.. +.++ . ++ .....++.++++..+.... ..............+.|
T Consensus 186 ~~----~~~~----------------~-~~----------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 230 (385)
T TIGR00710 186 YE----ARIQ----------------I-ST----------YFETFLLLLKSKMFWGYAL----IYGASFGGFFAFFSGAP 230 (385)
T ss_pred Cc----ccCC----------------H-HH----------HHHHHHHHHcCchhHHHHH----HHHHHHHHHHHHHHcCh
Confidence 10 0000 0 00 0112233444443222222 12222223344555667
Q ss_pred HHHH-hcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhH
Q 012646 257 VLFQ-SMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSIL 335 (459)
Q Consensus 257 ~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (459)
.+++ ++|.++.+.+.......++.+++.++.+++.||+++|+.+..+.....++..++...... .......
T Consensus 231 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 302 (385)
T TIGR00710 231 FVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAIL--------GLGSWAM 302 (385)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHh--------ccchHHH
Confidence 6665 589999999999999999999999999999999999998887766666665554433110 0011122
Q ss_pred HHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhH
Q 012646 336 VVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFG 400 (459)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 400 (459)
......+.+.+.+... +.......|..| +.++++.++.+.....++.+.+.+.+.+.+..++.
T Consensus 303 ~~~~~~~~g~~~~~~~-~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~ 365 (385)
T TIGR00710 303 IIGPMMFVGIGNSMIS-SIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHGNTAWP 365 (385)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccccChHH
Confidence 2222333334344333 333455567776 67899999999998877777777777544433333
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-31 Score=250.38 Aligned_cols=378 Identities=14% Similarity=0.069 Sum_probs=243.4
Q ss_pred cccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHH----hhHHHHHHHHHHhh
Q 012646 19 AHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAA----ANLAMLLTGRILLG 94 (459)
Q Consensus 19 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G 94 (459)
+..++ +|+++++.+++.+.+.++..+++++.|+++||+|||+.+..+.++.+++.+++++. ++++.+.+.|++.|
T Consensus 51 p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g 129 (438)
T TIGR00712 51 PYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNG 129 (438)
T ss_pred HHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 34444 59999999999999999999999999999999999999999999999998887764 46778889999999
Q ss_pred hhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHH-hhhccCC
Q 012646 95 VGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTV-GGILLPE 173 (459)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~-~~~~~~e 173 (459)
++.+...+.....+.|++|+++|++++++.+.+..+|..+++.+.... .....+||+.|++.++++++..+ ..+++||
T Consensus 130 ~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~ 208 (438)
T TIGR00712 130 WFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLG-MAWFNDWHAALYFPAICAIIVALFAFAMMRD 208 (438)
T ss_pred HHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999998898899999999999999999999999999999988763222 22235899999998888777654 4455788
Q ss_pred ChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcch-HHHhccCchhHHHHHHHHHHhhhhcchHHHH
Q 012646 174 TPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPF-RNILERRNRPQLVMAIFMPMFQILTGINSIL 252 (459)
Q Consensus 174 s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (459)
+|+....++..++ +.+... ...+ ..+.+.+.++.. +..++++. .+...+..++.........
T Consensus 209 ~~~~~~~~~~~~~--------~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 271 (438)
T TIGR00712 209 TPQSCGLPPIEEY--------RNDYPD--DYNE---KAEQELTAKEIFMQYVLPNKL----LWYIAIANVFVYLLRYGVL 271 (438)
T ss_pred CHHhcCCCCchhc--------cccccc--cccc---ccccccchHHHHHHHHccCch----HHHHHHHHHHHHHHHHHHH
Confidence 7743211100000 000000 0000 000000000111 12333333 2222222333333445666
Q ss_pred HhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccch
Q 012646 253 FYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKS 331 (459)
Q Consensus 253 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (459)
.+.|.++++ .|+++.+.+....+..+..+++.++.+++.||+++++....+............... .. +..
T Consensus 272 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~ 343 (438)
T TIGR00712 272 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYW---MN-----PAG 343 (438)
T ss_pred HhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHH---hc-----CCC
Confidence 788888876 799999999999999999999999999999999654322223222222111111110 00 001
Q ss_pred hhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHH-HHHHHHHHHHHhhchhHHHHHHHHH-H
Q 012646 332 FSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFT-FVIAQIFLTLLCSFKFGIFLFFAGW-V 409 (459)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~-~ 409 (459)
+.+.........+.+.. +..........|.+|++.|+++.|+.+..+.+++ .++|.+.|.+.|+.++...+..... .
T Consensus 344 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~ 422 (438)
T TIGR00712 344 NPLVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGS 422 (438)
T ss_pred chHHHHHHHHHHHHHHc-cHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHH
Confidence 11211111222221111 1111112345689999999999999999988875 6899999999998887665554444 3
Q ss_pred HHHHHHHHhccCCCC
Q 012646 410 TIMTIFVYFFLPETK 424 (459)
Q Consensus 410 ~~~~~~~~~~~~~~~ 424 (459)
++..+......+|.|
T Consensus 423 ~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 423 ILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHHHHHHHHhhcc
Confidence 344444444455543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=251.21 Aligned_cols=343 Identities=20% Similarity=0.306 Sum_probs=247.5
Q ss_pred hhhhhhhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHH
Q 012646 5 FQKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLA 84 (459)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~ 84 (459)
+..+....+.+..+....+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++..++++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~ 86 (352)
T PF07690_consen 7 LSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFW 86 (352)
T ss_dssp HHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHH
Confidence 33343334444444366788999999999999999999999999999999999999999999999999977777778888
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHH
Q 012646 85 MLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMM 164 (459)
Q Consensus 85 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~ 164 (459)
.+++.|++.|++.+...+...+++.|++|+++|++++++...+.++|.++++.+ +....+..+||+.|++.++..++.
T Consensus 87 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l--~~~l~~~~~~~~~~~~~~~~~~~~ 164 (352)
T PF07690_consen 87 LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLL--GGFLISYFGWRWAFLISAILSLIA 164 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHH--HHHCCCHCHHCCHHHHHHHHHHHH
T ss_pred HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccch--hhhhhhccccccccccccchhhhh
Confidence 999999999999999999999999999999999999999999999999999999 555556778999999999998888
Q ss_pred HHhh-hccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhh
Q 012646 165 TVGG-ILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQ 243 (459)
Q Consensus 165 ~~~~-~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (459)
.++. .+++++|+....+++.++. .+.+++..+.++..++++..+ ......+.
T Consensus 165 ~il~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 217 (352)
T PF07690_consen 165 AILFILFLPEPPPPRERESPKESE-----------------------SKKPKPLKPGFKSLFKNPVLW----ILLIAFFL 217 (352)
T ss_dssp HHHHHCCC---STTTT--SSTTTT-------------------------HHHCCCH-CTHHHHHHCCH----HHHHHHHH
T ss_pred hhhHhhhhhhcccccccccccccc-----------------------cccccccccccccccccchhh----hhhhhhhH
Confidence 6643 4455443211111110000 000011111244444444332 22222222
Q ss_pred hhcchHHHHHhHHHH-HHhcCCC-CchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhh
Q 012646 244 ILTGINSILFYAPVL-FQSMGFK-GDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLK 321 (459)
Q Consensus 244 ~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (459)
..........+.|.+ .+.+|++ ..+.+.......+..+++.++.+++.||+++|+..........+....+.....
T Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 295 (352)
T PF07690_consen 218 FFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPF-- 295 (352)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHH--
T ss_pred HHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 333445577788887 4558888 688888899999999999999999999999987777766665555554443221
Q ss_pred cCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHH
Q 012646 322 FGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIA 387 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 387 (459)
.++.........+.+.+.+.. .+....+..|..|+++++++.|+.+...++++.++|
T Consensus 296 --------~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 296 --------SSSPVWLIIALFLIGFGFGIV-FPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp --------HCHHHHHHHHHHHHHHHHHHH-CHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 112333344444455555433 444468888999999999999999999999999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-30 Score=242.12 Aligned_cols=353 Identities=14% Similarity=0.083 Sum_probs=237.3
Q ss_pred CcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHH---H-HhhHHHHHHHHHHhhhhhh
Q 012646 23 NYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNA---A-AANLAMLLTGRILLGVGIG 98 (459)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~---~-~~~~~~l~~~r~l~G~~~~ 98 (459)
+|+|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++++++. + .++++.+++.|+++|++.+
T Consensus 41 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~ 120 (402)
T TIGR00897 41 KALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYP 120 (402)
T ss_pred HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchH
Confidence 56799999999999999999999999999999999999999999999999877653 2 2578888999999999998
Q ss_pred hhhhhhhhhhhhccCccchhHHHHHHHHHHHHHH-HHHHHHhhhccccccchhHHHHHhhHHHHHHHHHh-hhccCCChh
Q 012646 99 FGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGI-FTANMINYGTQKLETWGWRLSLGLAAAPALMMTVG-GILLPETPN 176 (459)
Q Consensus 99 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~~~es~~ 176 (459)
...+.....+.+++|+++|++++++.+.+.++|. ++++++ .....+..||+..++......++..++ .++.+|.++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~--~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (402)
T TIGR00897 121 LFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYY--SSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFT 198 (402)
T ss_pred HHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 8888888889999999999999999999999997 578887 344444567665555443333332222 233444321
Q ss_pred hHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHhHH
Q 012646 177 SLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAP 256 (459)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (459)
.. ++++++ +.+ +.++..++.++++.. +...+..++..........+.|
T Consensus 199 ~~-~~~~~~-----------------~~~----------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p 246 (402)
T TIGR00897 199 PQ-HMQTRE-----------------KFS----------ELGKAATILFTNPNV----LLGGMVRIINTIGLFGFAVFLP 246 (402)
T ss_pred cc-cccCCc-----------------chh----------hHHHHHHHHHcChhH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000000 000 001123344444432 2222223333344566777889
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhh-hhHHHHHHHHHHHHHHhhhcCCCccccchhhhH
Q 012646 257 VLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLIS-GGIQMITCQVIVSIILGLKFGPNQELSKSFSIL 335 (459)
Q Consensus 257 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (459)
.+.+++|++..+.+.......++.+++.+..|++.||++||+.... +.....++...+...... ..++.+.
T Consensus 247 ~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~--------~~~~~~~ 318 (402)
T TIGR00897 247 MFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH--------FGHSFAV 318 (402)
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc--------cCCcHHH
Confidence 8888899999998888888899999999999999999998876532 222223322222211100 0011222
Q ss_pred HHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q 012646 336 VVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIF 415 (459)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (459)
......+.+.+.+. ..+. .....|..| ++|+++.|+.+....+++.++|.+.+.+.+..++...+...+++.+++.+
T Consensus 319 ~~~~~~~~G~~~~~-~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~ 395 (402)
T TIGR00897 319 ALIIAIALGIFLAG-YVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAF 395 (402)
T ss_pred HHHHHHHHHHHHHH-HHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 33333344443332 2333 234456554 68999999999999999999999999999988876666666555555555
Q ss_pred HHhcc
Q 012646 416 VYFFL 420 (459)
Q Consensus 416 ~~~~~ 420 (459)
...++
T Consensus 396 ~~~~~ 400 (402)
T TIGR00897 396 LTAFI 400 (402)
T ss_pred HHHHh
Confidence 54443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-30 Score=243.23 Aligned_cols=341 Identities=16% Similarity=0.192 Sum_probs=243.6
Q ss_pred hhhhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHH
Q 012646 8 FFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLL 87 (459)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~ 87 (459)
+-.+.+.+.. ++.++++|.++.+.+++.+.+.++..++++++|+++||+|||+++..+.++..++.+++.++++++.++
T Consensus 20 ~~~~~~~p~~-~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (401)
T PRK11043 20 LATDMYLPAF-KAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLL 98 (401)
T ss_pred HHHHHHHhhH-HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3344455544 345678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHh
Q 012646 88 TGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVG 167 (459)
Q Consensus 88 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~ 167 (459)
+.|+++|++.+...+...+++.|++|++++++..+.......+|..++|.+ .....+..|||+.|++.++..++..+.
T Consensus 99 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i--~~~l~~~~g~~~~~~~~~~~~~~~~~~ 176 (401)
T PRK11043 99 VLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLL--GAWLLNHFGWQAIFATLFAITLLLILP 176 (401)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 999999999888888888899999999999999999988889999999988 445555679999999988888777666
Q ss_pred hhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcc
Q 012646 168 GILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTG 247 (459)
Q Consensus 168 ~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (459)
.++++|+++. ++. + +.+.++++.++++..+....... .....
T Consensus 177 ~~~~~~~~~~----~~~-~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 218 (401)
T PRK11043 177 TLRLKPSKKA----RKQ-S-----------------------------QDALTFKQLLKSKTYLGNVLIFA----ACSAA 218 (401)
T ss_pred HHHcCCCCCc----ccc-c-----------------------------hHHHHHHHHHcChhHHHHHHHHH----HHHHH
Confidence 5556654410 000 0 00112334444433222222111 11122
Q ss_pred hHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCcc
Q 012646 248 INSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQE 327 (459)
Q Consensus 248 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (459)
+.....+.|.+.++.|+++.+.+.......++.+++.++.+++.||+++|+..........++...+......
T Consensus 219 ~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 291 (401)
T PRK11043 219 FFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLL------- 291 (401)
T ss_pred HHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 3445566788888889999888988888888899999999999999998887665555544444333222110
Q ss_pred ccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 012646 328 LSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKF 399 (459)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 399 (459)
.....+.......+.+.+.+... +.......|..| +.++++.|+.+.....++..++.+.+.+.+....
T Consensus 292 -~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~ 360 (401)
T PRK11043 292 -SHPSLVPLLIPFCVMAAANGAIY-PIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLL 360 (401)
T ss_pred -ccCcHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChh
Confidence 01112222333333344444333 333344446665 5799999999999999999999999988775433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-30 Score=238.66 Aligned_cols=326 Identities=22% Similarity=0.313 Sum_probs=266.3
Q ss_pred cccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhh
Q 012646 19 AHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIG 98 (459)
Q Consensus 19 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 98 (459)
+...+++|.++.+.+++.+...++..+++++.|+++||+|||+.+..+.++..++.+...+.++++.+++.|++.|++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 102 (352)
T cd06174 23 PLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGG 102 (352)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccc
Confidence 33445678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccCCChhhH
Q 012646 99 FGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSL 178 (459)
Q Consensus 99 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~es~~~l 178 (459)
...+...+++.|++|+++|++.+++......+|..+++.+ .....+..+||+.+++.++..++..+...+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 174 (352)
T cd06174 103 ALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLL--GGLLAESLGWRWLFLILAILGLLLALLLLFLL------ 174 (352)
T ss_pred cccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 9999999999999999999999999999999999999999 44555556799999998888777666554432
Q ss_pred HhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHhHHHH
Q 012646 179 IERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVL 258 (459)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (459)
+..+...+..+...........+.|.+
T Consensus 175 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (352)
T cd06174 175 -----------------------------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLY 201 (352)
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 112333334444455566777788888
Q ss_pred HHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCch-hhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHH
Q 012646 259 FQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRA-LLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILV 336 (459)
Q Consensus 259 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (459)
.++ .|.+..+.+.......++.+++.++.+++.||++||+ .+..+.....++.+..... ++.+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~~~~ 268 (352)
T cd06174 202 LQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA-------------PSLALL 268 (352)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-------------ccHHHH
Confidence 776 5899999999999999999999999999999999999 8888877777776665543 113334
Q ss_pred HHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q 012646 337 VVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFV 416 (459)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (459)
.....+.+.+.+. ..+....+..|..|+++|++..|+.+....++..+++.+.+.+.+..++...+...+++.+++.+.
T Consensus 269 ~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~ 347 (352)
T cd06174 269 LVALLLLGFGLGF-AFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347 (352)
T ss_pred HHHHHHHHHHHhc-cchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence 4444445555543 345557888999999999999999999999999999999999998888777666666666665555
Q ss_pred Hhc
Q 012646 417 YFF 419 (459)
Q Consensus 417 ~~~ 419 (459)
...
T Consensus 348 ~~~ 350 (352)
T cd06174 348 LLL 350 (352)
T ss_pred hee
Confidence 443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-30 Score=242.15 Aligned_cols=349 Identities=12% Similarity=0.100 Sum_probs=242.6
Q ss_pred hhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 012646 13 YLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRIL 92 (459)
Q Consensus 13 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 92 (459)
..+..+...++++|+|..+.|++.+...++..+.+++.|+++||+|||+++..+.++..++.+++.++++++.+++.|++
T Consensus 29 ~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 108 (400)
T PRK11646 29 VFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCIL 108 (400)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34444444567789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHh-hhcc
Q 012646 93 LGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVG-GILL 171 (459)
Q Consensus 93 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~~ 171 (459)
+|++.+...+...+++.|++|+++|++++++.....++|..+||.++ .... ..+||+.|++.++..++..+. .++.
T Consensus 109 ~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~--g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~ 185 (400)
T PRK11646 109 SGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLG--SWLL-QYDFRLVCATGAVLFVLAAAFNAWLL 185 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999988899999999999999999999999999999999999995 3333 568999999988777665443 3445
Q ss_pred CCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHH
Q 012646 172 PETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSI 251 (459)
Q Consensus 172 ~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (459)
||.+. ++.+ ++.+.++++.++++....... ..+.........
T Consensus 186 ~~~~~-----~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 227 (400)
T PRK11646 186 PAYKL-----STVR-----------------------------TPVREGMTRVLRDKRFVTYVL----TLTGYYMLAVQV 227 (400)
T ss_pred Ccccc-----cccc-----------------------------hhhHHHHHHHHcCchHHHHHH----HHHHHHHHHHHH
Confidence 54210 0000 000112344444443221111 111111112233
Q ss_pred HHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHh-hcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccc
Q 012646 252 LFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVD-KLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSK 330 (459)
Q Consensus 252 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (459)
..+.|.+.++.+.++.+.+.......+....+....+++.| |.+.++.+..+.....++...+...
T Consensus 228 ~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~------------- 294 (400)
T PRK11646 228 MLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV------------- 294 (400)
T ss_pred HHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-------------
Confidence 45678887775557777888877777766655555555555 4565655556555555554443322
Q ss_pred hhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhch----hHHHHHHH
Q 012646 331 SFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFK----FGIFLFFA 406 (459)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~ 406 (459)
++.+.......+++.+.+.. .|...++..+..|++.|++++|+.+....+|..++|.+.|.+.|+.+ ....+...
T Consensus 295 ~~~~~~~~~~~l~~~g~~~~-~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~ 373 (400)
T PRK11646 295 SNLQQLFTLICLFYIGSIIA-EPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMML 373 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHH-HccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHH
Confidence 11222233333344444333 34445777899999999999999999999999999999999998753 23444444
Q ss_pred HHHHHHHHHH
Q 012646 407 GWVTIMTIFV 416 (459)
Q Consensus 407 ~~~~~~~~~~ 416 (459)
.+..+.+.+.
T Consensus 374 ~~~~~~~~~~ 383 (400)
T PRK11646 374 GIIGLITLLA 383 (400)
T ss_pred HHHHHHHHHH
Confidence 4444444433
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-30 Score=237.71 Aligned_cols=355 Identities=12% Similarity=0.088 Sum_probs=235.5
Q ss_pred hhhhhhcccccCCcccCCchhhHHHHHHHHH-HHHHHHHhHhhhhhhcCcchhh-hHHHHHHHHHHHHHHHHhhHHHHHH
Q 012646 11 DVYLKKKHAHENNYCKYDNQGLAAFTSSLYL-AGLVASFVASPVTRDYGRRASI-ICGGISFLLGAALNAAAANLAMLLT 88 (459)
Q Consensus 11 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grk~~l-~~~~~~~~~~~~~~~~~~~~~~l~~ 88 (459)
....+..+....+++|+|++++|++.+...+ +..++.++.++ +||+||||.+ ..+.++.+++..+.+++++++.+++
T Consensus 32 ~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 110 (393)
T PRK15011 32 ALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLF 110 (393)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3345556666788999999999999876655 55566655666 9999999864 5666666788888889999998876
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhccCccch--hHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHH
Q 012646 89 GRILLGVGIGFGNQAVPLYLSEMAPTHLR--GGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTV 166 (459)
Q Consensus 89 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~ 166 (459)
.+.+.|...+...+....++.|+.++++| +...++.+.+.++|.+++|++ +....+..|||..|++.++..++..+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i--~~~l~~~~gw~~~f~~~~~~~~~~~~ 188 (393)
T PRK15011 111 VGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPL--AYALAMGFSFTVMYLSAAVAFIVCGV 188 (393)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHH--HHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 66555555567788888888898876655 345578888999999999999 55555567999999998887776655
Q ss_pred hh-hccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhh
Q 012646 167 GG-ILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQIL 245 (459)
Q Consensus 167 ~~-~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (459)
.. +++||+++. ++.++ ++ .+. ..+++ +..+...... ....
T Consensus 189 ~~~~~~~~~~~~----~~~~~----------------------------~~-~~~---~~~~~--~~~~~~~~~~-~~~~ 229 (393)
T PRK15011 189 MVWLFLPSMRKE----LPLAT----------------------------GT-LEA---PRRNR--RDTLLLFVIC-TLMW 229 (393)
T ss_pred HHHhhcCccCCC----Ccccc----------------------------cc-ccc---ccccc--ccHHHHHHHH-HHHH
Confidence 44 457876521 00000 00 000 00111 1111111111 1122
Q ss_pred cchHHHHHhHHHHHH-hcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCC
Q 012646 246 TGINSILFYAPVLFQ-SMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGP 324 (459)
Q Consensus 246 ~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (459)
........+.|.+.+ ++|+++.+.+.......++.+++.++.|+++||++||+.+..+.....+....+...
T Consensus 230 ~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------- 302 (393)
T PRK15011 230 GTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA------- 302 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-------
Confidence 233445556777765 489998888888877778888899999999999999987766544433332222111
Q ss_pred CccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 012646 325 NQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLF 404 (459)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 404 (459)
++.+..+....+.....+..... ...+..|..|+ .++++.++.+...++|..++|.+.|.+.+..++...+.
T Consensus 303 ------~~~~~~l~~~~l~~~~~g~~~~~-~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~ 374 (393)
T PRK15011 303 ------HSPAILLGLQLLNAIYIGILGGI-GMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFW 374 (393)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 11222222222222222222222 23455788885 59999999999999999999999999999888877777
Q ss_pred HHHHHHHHHHHHHhccCC
Q 012646 405 FAGWVTIMTIFVYFFLPE 422 (459)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~ 422 (459)
...++.+++.+.++..||
T Consensus 375 ~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 375 FALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 777777777777766654
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=227.87 Aligned_cols=359 Identities=15% Similarity=0.145 Sum_probs=273.7
Q ss_pred hhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhH---HHHHHH
Q 012646 13 YLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANL---AMLLTG 89 (459)
Q Consensus 13 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~---~~l~~~ 89 (459)
..+...+.+++|+|+|+.|.+++.+...+..++.-++.|.+.||+|.|++...+.++..+-++..+++.++ +.+++.
T Consensus 32 l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~ 111 (417)
T COG2223 32 LFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVI 111 (417)
T ss_pred HHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHH
Confidence 44556667779999999999999999999999999999999999999999999999999999999998554 599999
Q ss_pred HHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccch---hHHHHHhhHHHHHHHHH
Q 012646 90 RILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWG---WRLSLGLAAAPALMMTV 166 (459)
Q Consensus 90 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~g---wr~~f~~~~~~~~~~~~ 166 (459)
+++.|++ |+.+.+...++++|+||+++|.++|+.. ..++|..+...+ ........+ ||....+..+..++..+
T Consensus 112 gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~--~P~v~~~~g~~~w~~~~~i~~~~l~v~~v 187 (417)
T COG2223 112 GLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLV--APLVAVAFGFLAWRNVAGIYVVALAIAAV 187 (417)
T ss_pred HHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999998 6678899999999999999999999999 778888777666 333344446 99999998888888666
Q ss_pred hhh-ccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCC-cchHHHhccCchhHHHHHHHHHHhhh
Q 012646 167 GGI-LLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIK-HPFRNILERRNRPQLVMAIFMPMFQI 244 (459)
Q Consensus 167 ~~~-~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (459)
..+ ...|.|... ...++.. ..++...+++. .+.+.+..+..
T Consensus 188 ~~~~~~~d~p~~r---------------------------------~~~~~~~~~~~~~v~~~~~----~W~lsllY~~t 230 (417)
T COG2223 188 LAWLGMNDVPEHR---------------------------------ASVKPQLPAQLKAVFSNKD----TWLLSLLYFAT 230 (417)
T ss_pred HHHHHhCCChhhh---------------------------------ccccccchhHHHHHhcCcc----hHHHHHHHHHH
Confidence 554 466666210 0001111 23344444444 44455555556
Q ss_pred hcchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcC
Q 012646 245 LTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFG 323 (459)
Q Consensus 245 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (459)
+.++..+..+.|.++++ +|.++.+++.......+.+.+.+.++|+++||+|.++.....+..+.++...+.....
T Consensus 231 FG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~---- 306 (417)
T COG2223 231 FGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLT---- 306 (417)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccc----
Confidence 66778888899988775 9999999999999999999999999999999999999999988888888777765421
Q ss_pred CCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhch-hHHH
Q 012646 324 PNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFK-FGIF 402 (459)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~ 402 (459)
...........+..........+.+...+ +.++...+|. +.|.+.|+....+.+|++.-|..++...+..+ +...
T Consensus 307 --~~~~~~~~~~~~~~~l~l~~~~G~GnGsv-fk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~ 382 (417)
T COG2223 307 --GFGHGGSFVVFVAVFLALFVFAGLGNGSV-FKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGA 382 (417)
T ss_pred --ccccCcchHHHHHHHHHHHHHhccCcchh-eeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHH
Confidence 00011223344444455555555565555 6777788874 67889999999999999999999999999888 5555
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 012646 403 LFFAGWVTIMTIFVYFFL 420 (459)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~ 420 (459)
+.+...+.+.+.+.....
T Consensus 383 f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 383 FMLLLAFYLVALVLTWAL 400 (417)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555544443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-30 Score=240.35 Aligned_cols=352 Identities=15% Similarity=0.120 Sum_probs=238.4
Q ss_pred hhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 012646 11 DVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGR 90 (459)
Q Consensus 11 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r 90 (459)
+.+.+..+ +..++++.+..+.++..+.+.++++++++++|+++||+|||++++.+.++++++++++.+++|++.++++|
T Consensus 33 ~~~~p~l~-~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r 111 (413)
T PRK15403 33 DLIQPGII-NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIAR 111 (413)
T ss_pred HhhccCHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34444443 46778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHh-hh
Q 012646 91 ILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVG-GI 169 (459)
Q Consensus 91 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~ 169 (459)
+++|++.+...+....++.|++|+++|++++++...+..+|..++|.++ ....+..|||+.|++.++..++..+. .+
T Consensus 112 ~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg--~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 112 FIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSG--AALMHFVHWKVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998877777788899999999999999999999999999999984 44445579999999998887777654 34
Q ss_pred ccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchH
Q 012646 170 LLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGIN 249 (459)
Q Consensus 170 ~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (459)
.+||+++. +++..+ .. +..+.+++.++++. ++...+..........
T Consensus 190 ~lp~~~~~---~~~~~~-----------------~~----------~~~~~~~~ll~~~~----~~~~~l~~~~~~~~~~ 235 (413)
T PRK15403 190 AMPETVKR---GAVPFS-----------------AK----------SVLRDFRNVFRNRL----FLTGAATLSLSYIPMM 235 (413)
T ss_pred hCCCCccc---cCCCCC-----------------hH----------HHHHHHHHHHcCHH----HHHHHHHHHHHHHHHH
Confidence 57887521 000000 00 00112344444433 2222222333333445
Q ss_pred HHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccc
Q 012646 250 SILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQEL 328 (459)
Q Consensus 250 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (459)
.+..+.|.++++ +|+++.+.++.......+.+++..+.+.+.++..+++..........++..++......
T Consensus 236 ~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~-------- 307 (413)
T PRK15403 236 SWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLL-------- 307 (413)
T ss_pred HHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 566677877776 69999999998888888888888888877655444444332222233333222221100
Q ss_pred cchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 012646 329 SKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGW 408 (459)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (459)
..+..+......++++.+.+....+. .... ..-....+|++.++.+.....+...++...+++.++.....+.....+
T Consensus 308 ~~~~~~~~~~~~~l~~~G~~~~~p~~-~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 385 (413)
T PRK15403 308 WPHVWLWSVLGTSLYAFGIGLIFPTL-FRFT-LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVV 385 (413)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhHHH-HHHH-hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 01112222344444455544443333 2111 111223479999999999999999999999988766443333333333
Q ss_pred H
Q 012646 409 V 409 (459)
Q Consensus 409 ~ 409 (459)
+
T Consensus 386 ~ 386 (413)
T PRK15403 386 A 386 (413)
T ss_pred H
Confidence 3
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.2e-30 Score=240.56 Aligned_cols=333 Identities=16% Similarity=0.194 Sum_probs=229.0
Q ss_pred hhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 012646 11 DVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGR 90 (459)
Q Consensus 11 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r 90 (459)
+.+... .+...+++|.++.+.++..+.+.++..+++++.|+++||+|||+.++.+.++..++.+++.++++++.+++.|
T Consensus 20 ~~~~~~-lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 98 (392)
T PRK10473 20 DMYLVG-LPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGR 98 (392)
T ss_pred HHHhhh-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 334433 3445677899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHh-hh
Q 012646 91 ILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVG-GI 169 (459)
Q Consensus 91 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~ 169 (459)
+++|++.+...+....++.|++|+++|+++.++.+....+|..++|.++ ....+..+||+.|++.++.+++..+. .+
T Consensus 99 ~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~--~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 176 (392)
T PRK10473 99 FLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLG--HLIMLKFPWQSLFYTMAAMGILVLLLSLF 176 (392)
T ss_pred HHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhCcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999884 44445568999999988877766554 35
Q ss_pred ccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchH
Q 012646 170 LLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGIN 249 (459)
Q Consensus 170 ~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (459)
++||+++.. ++.++ . ..+..++.++++......... .. ......
T Consensus 177 ~~~~~~~~~---~~~~~----------------~-------------~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~ 220 (392)
T PRK10473 177 ILKETRPAR---APAAS----------------S-------------KPRENSESLLNRFFLSRLVIT---TL-SVTVIL 220 (392)
T ss_pred HcCCCCCcc---cCCcc----------------c-------------hHHHHHHHHhCHHHHHHHHHH---HH-HHHHHH
Confidence 567764210 00000 0 000111223222211111111 11 111122
Q ss_pred HHHHhHHHHHH-hcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccc
Q 012646 250 SILFYAPVLFQ-SMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQEL 328 (459)
Q Consensus 250 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (459)
....+.|.+.+ ++|+++.+.+......+++.+++.++.+++.||+++|+.+..+..+..++.+.+....
T Consensus 221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~---------- 290 (392)
T PRK10473 221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP---------- 290 (392)
T ss_pred HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 33444555554 5899988889888899999999999999999999999988887776666655554431
Q ss_pred cchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHH
Q 012646 329 SKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGI 401 (459)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 401 (459)
. .........+...+.+..... ....+..|.+.|+ |.......++..+++.+.+.+.++.++..
T Consensus 291 --~-~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~ 354 (392)
T PRK10473 291 --S-HAVSLFGITLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISA 354 (392)
T ss_pred --H-HHHHHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 1 112222223333333322222 2223444544443 44445555666777777777777666543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.8e-30 Score=238.20 Aligned_cols=323 Identities=17% Similarity=0.186 Sum_probs=226.1
Q ss_pred CCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhh
Q 012646 22 NNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGN 101 (459)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 101 (459)
.+++|+++.+.+++.+.+.++..++.++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+...
T Consensus 18 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 97 (377)
T PRK11102 18 AADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAAS 97 (377)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhh-hccCCChhhHHh
Q 012646 102 QAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGG-ILLPETPNSLIE 180 (459)
Q Consensus 102 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~es~~~l~~ 180 (459)
+...+++.|++|+++|++++++...+..+|..++|.+ .....+..+||+.|++.++..++..+.. +++||+++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 173 (377)
T PRK11102 98 VVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPII--GGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLPKE-- 173 (377)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCccc--
Confidence 9999999999999999999999999999999999998 4444556789999999888877765443 5577754210
Q ss_pred hCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHhHHHHH-
Q 012646 181 RGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLF- 259 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 259 (459)
++++ .+ .++ ...++++.++++.. . ...+..............+.|.++
T Consensus 174 --~~~~-----------~~----~~~----------~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (377)
T PRK11102 174 --RRQP-----------FH----LRT----------TIRNFASLFRHKRV---L-GYMLASGFSFAGMFSFLTAGPFVYI 222 (377)
T ss_pred --ccCC-----------CC----hHH----------HHHHHHHHHcChHH---H-HHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 0000 00 000 00122334433322 1 122222222233344444555554
Q ss_pred HhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHH
Q 012646 260 QSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVV 339 (459)
Q Consensus 260 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (459)
+.+|+++.+.+.......++.+++.++.+++.||+++|+.+..+.....+..+.+..... .....+.....
T Consensus 223 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 293 (377)
T PRK11102 223 ELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSAL---------LDLGFWALVVG 293 (377)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH---------HhhhHHHHHHH
Confidence 458999999999999999999999999999999999999888777654444333322210 00112222222
Q ss_pred HHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHH-HHHHHHHHHH
Q 012646 340 ICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNL-FFTFVIAQIF 390 (459)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~~~ 390 (459)
..+...+.+... +.......|..| +.++++.++.+.... ++..+++.+.
T Consensus 294 ~~~~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~ 343 (377)
T PRK11102 294 VAAFVGCVSMIS-SNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLS 343 (377)
T ss_pred HHHHHHHHHHhh-HHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333332222 222344567666 789999998877654 4555555443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-31 Score=246.15 Aligned_cols=272 Identities=18% Similarity=0.172 Sum_probs=212.7
Q ss_pred cCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhh
Q 012646 21 ENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFG 100 (459)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 100 (459)
..+|.+....+.+.+.++++++++++.+++|.+.||++..+.+....+++++..++....+|++.+++.|++.|+.+++.
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~ 151 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGG 151 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccc
Confidence 46888999999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred hhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccc----cccchhHHHHHhhHHHHHHHHHhh-hccCCCh
Q 012646 101 NQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQK----LETWGWRLSLGLAAAPALMMTVGG-ILLPETP 175 (459)
Q Consensus 101 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~----~~~~gwr~~f~~~~~~~~~~~~~~-~~~~es~ 175 (459)
+|....+++.|+.++||++.++++.+..++|.++|++++++... ....||||.|++.++++++..++. +++|+.|
T Consensus 152 wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P 231 (495)
T KOG2533|consen 152 WPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNP 231 (495)
T ss_pred chHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCCh
Confidence 99999999999999999999999999999999999999877433 223689999999999998886654 6689998
Q ss_pred h--hHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHH
Q 012646 176 N--SLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILF 253 (459)
Q Consensus 176 ~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (459)
. +...+++++-..+..++.+.. ...++.++..+++.++++. ++.+.+..++.....+.+.+
T Consensus 232 ~~~~fl~~~ek~~~~~~~~~~~~~-------------~~~~~~~~~~~~~a~~dp~----vw~~~l~~~~~~lv~~~~~~ 294 (495)
T KOG2533|consen 232 SKAWFLTDEEKELVVERLRESPSG-------------GIENKFKWKGFKEALKDPG----VWPFSLCYFFLKLVNYGFSY 294 (495)
T ss_pred hhccccchHHHHHHHHHHHhccCC-------------CcccccCHHHHHHHHhchh----HHHHHHHHHHHhhccccHHH
Confidence 5 222221111111111000000 0001112233445555554 56666666777777788999
Q ss_pred hHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhh----cCCchhhhhhhHHHHH
Q 012646 254 YAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDK----LGRRALLISGGIQMIT 309 (459)
Q Consensus 254 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~~~~~~~~~ 309 (459)
|+|.++++ .|++..++..+.++..++++++.+++|+++|| ..+|........+...
T Consensus 295 ~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~ 355 (495)
T KOG2533|consen 295 WLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAI 355 (495)
T ss_pred HHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 99999988 67999999999999999999999999999999 4455444444443333
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.9e-30 Score=240.47 Aligned_cols=345 Identities=14% Similarity=0.082 Sum_probs=236.8
Q ss_pred CcccCCchh-----hHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhh
Q 012646 23 NYCKYDNQG-----LAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGI 97 (459)
Q Consensus 23 ~~~~~s~~~-----~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 97 (459)
+++|++..+ .|++.+.+.++..+++++.|+++||+|||+++..+.++..++.+++.++++++.+++.|++.|++.
T Consensus 42 ~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 121 (408)
T PRK09874 42 EQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLG 121 (408)
T ss_pred HHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 456777554 489999999999999999999999999999999999999999999999999999999999999985
Q ss_pred hhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhh-hccCCChh
Q 012646 98 GFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGG-ILLPETPN 176 (459)
Q Consensus 98 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~es~~ 176 (459)
+ ..+....++.|++|+++|+++.++...+..+|.+++|.+ .....+..+||+.|++.++..++..+.. +++||+++
T Consensus 122 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (408)
T PRK09874 122 G-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLA--GGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQ 198 (408)
T ss_pred h-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 5 567778889999999999999999999999999999998 4444556789999999888777665544 44666431
Q ss_pred hHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHhHH
Q 012646 177 SLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAP 256 (459)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (459)
.. ++++ ..+ . ....+.++++.. ........+...........+.+
T Consensus 199 ~~----~~~~-----------------~~~---~--------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 243 (408)
T PRK09874 199 PV----SKKE-----------------MLH---M--------REVVTSLKNPKL---VLSLFVTTLIIQVATGSIAPILT 243 (408)
T ss_pred cc----cchh-----------------hhH---H--------HHHHHhCcCCch---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 0000 000 0 001112222221 11111111111112233344455
Q ss_pred HHHHhcCCCCch----hHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchh
Q 012646 257 VLFQSMGFKGDA----SLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSF 332 (459)
Q Consensus 257 ~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (459)
.+..+.+.+..+ .+......+++.+++.+..+++.||++||+.+..+.....++.+..... ..
T Consensus 244 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------------~~ 310 (408)
T PRK09874 244 LYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV-------------QT 310 (408)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh-------------cc
Confidence 555553322222 3445556677888888899999999999998887766555544433321 11
Q ss_pred hhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 012646 333 SILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIM 412 (459)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (459)
.+...+...+.+.+.+.. .+.......+..|++.+++.+++.+....+|..++|.+.|.+.++.++...+...+++.+.
T Consensus 311 ~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~ 389 (408)
T PRK09874 311 PLQLGILRFLLGAADGAL-LPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLF 389 (408)
T ss_pred HHHHHHHHHHHHhhhHhh-HHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 233333334444444433 2333455567788899999999999999999999999999999988887777666666655
Q ss_pred HHHHHhc
Q 012646 413 TIFVYFF 419 (459)
Q Consensus 413 ~~~~~~~ 419 (459)
+.+...+
T Consensus 390 ~~~~~~~ 396 (408)
T PRK09874 390 NAVYSWN 396 (408)
T ss_pred HHHHHHH
Confidence 5554443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.1e-30 Score=237.86 Aligned_cols=360 Identities=12% Similarity=0.071 Sum_probs=242.8
Q ss_pred hhhhhhhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHH
Q 012646 5 FQKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLA 84 (459)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~ 84 (459)
+..+-+..+....++. .++++.++.+.+++.+.+.+++.+++++.|+++||+|||++++.+.++.+++++++.++.+.
T Consensus 14 ~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~- 91 (393)
T PRK11195 14 FSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP- 91 (393)
T ss_pred HHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH-
Confidence 3333333333333333 46788899999999999999999999999999999999999999999999999888877664
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHH
Q 012646 85 MLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMM 164 (459)
Q Consensus 85 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~ 164 (459)
++.|+++|++.+...|+..+++.|++|+++|++++++.+....+|.++||.++ +...+. .|+..+.+.+...++.
T Consensus 92 --~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lg--G~l~~~-~~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 92 --LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLG--GALADP-HAEAALAVCALIYLLA 166 (393)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999995 333332 4777777766655555
Q ss_pred HHhhhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhh
Q 012646 165 TVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQI 244 (459)
Q Consensus 165 ~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (459)
.+..+.+||+|++...++ ++..+ ..++. +...+.+++++..+.......+..
T Consensus 167 ~~~~~~l~~~~~~~~~~~--~~~~~-------------~~~~~----------~~~~~~l~~~~~~~~~~~~~~~~~--- 218 (393)
T PRK11195 167 ALFNLFIPRLGARRPGQS--WNPIA-------------LLRDF----------FHACRVLWRDKLGRFSLAGTTLFW--- 218 (393)
T ss_pred HHHHhcCCCCcccccccC--CCHHH-------------HHHHH----------HHHHHHHHhCchhHHHHHHHHHHH---
Confidence 555566788653211000 00000 00000 011234444444333222221111
Q ss_pred hcchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcC
Q 012646 245 LTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFG 323 (459)
Q Consensus 245 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (459)
.......+..|.+.++ +|.++.+.+......+++.+++.+..+++.||.++++.+..+.. .++....+...
T Consensus 219 -~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~------ 290 (393)
T PRK11195 219 -GAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQ------ 290 (393)
T ss_pred -HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHH------
Confidence 1223334444555554 89999999999999999999999999999999988877666532 22222222111
Q ss_pred CCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccc-cchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHH
Q 012646 324 PNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLET-RSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIF 402 (459)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 402 (459)
++.+.......+.+.+.+....+. .+...+..|++. +|++.++.+...+++..++..+.+.+ +..+-...
T Consensus 291 -------~~~~~~~~~~~~~G~~~g~~~~~~-~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 361 (393)
T PRK11195 291 -------HSLLPAYPLLILIGALGGFFVVPM-NALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVV 361 (393)
T ss_pred -------hHHHHHHHHHHHHHHhhhhhhhhH-HHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHH
Confidence 122333334444555555444444 455567666554 79999999999999999999998855 56665555
Q ss_pred HHHHHHHHHHHHHH
Q 012646 403 LFFAGWVTIMTIFV 416 (459)
Q Consensus 403 ~~~~~~~~~~~~~~ 416 (459)
..+..++.+.+...
T Consensus 362 ~~~~~~~~~~~~~~ 375 (393)
T PRK11195 362 AVIVGFGLLVALAM 375 (393)
T ss_pred HHHHHHHHHHHHHH
Confidence 55544444444433
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-30 Score=237.43 Aligned_cols=352 Identities=9% Similarity=0.024 Sum_probs=245.4
Q ss_pred hhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 012646 11 DVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGR 90 (459)
Q Consensus 11 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r 90 (459)
....+..++..++++|++..+.|++.+.+.++..+++++.|+++||+|||++++.+.++..++.++.+++++++.++++|
T Consensus 24 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (395)
T PRK10054 24 GATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFF 103 (395)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34445555666778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhh-h
Q 012646 91 ILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGG-I 169 (459)
Q Consensus 91 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~ 169 (459)
++.|.+.+...+...++..|..|+++|++++++.....++|.+++|.++... . ..+||..|++.++..++..+.. +
T Consensus 104 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l--~-~~g~~~~f~~~~~~~~i~~i~~~~ 180 (395)
T PRK10054 104 ALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLL--V-MQSINLPFWLAAICSAFPLVFIQI 180 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HhccCcHHHHHHHHHHHHHHHHHH
Confidence 9999888888888899999999999999999999999999999999995433 2 3589999998888777665443 4
Q ss_pred ccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchH
Q 012646 170 LLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGIN 249 (459)
Q Consensus 170 ~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (459)
++||+++. ++.++ + + ....++.++++..+.......+..+ ...
T Consensus 181 ~~~~~~~~----~~~~~----------------------~--~-----~~~~~~~~~~~~~~~~~~~~~l~~~----~~~ 223 (395)
T PRK10054 181 WVQRSEKA----IATET----------------------G--S-----VWSPSVLLQDKALLWFTCSGFLASF----VSG 223 (395)
T ss_pred HHhccccc----cccch----------------------h--h-----hhhhhhhccCceehHHHHHHHHHHH----HHH
Confidence 45554310 00000 0 0 0011334444443322222222111 122
Q ss_pred HHHHhHHHHH---HhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCc
Q 012646 250 SILFYAPVLF---QSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQ 326 (459)
Q Consensus 250 ~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (459)
....+.+.+. ++.+.+....+.......+.........+++.||.++|+.+..+.....++...+....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------- 295 (395)
T PRK10054 224 AFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG-------- 295 (395)
T ss_pred HhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc--------
Confidence 2222333333 23455555667777777777777778889999999999988877766666655443321
Q ss_pred cccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 012646 327 ELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFA 406 (459)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (459)
++.+.......+++.+.. ...|.....+.+..|++.+++..+..+ ...+|..++|.+.|.+.|+.++...+...
T Consensus 296 ----~~~~~~~~~~~~~~~g~~-~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~ 369 (395)
T PRK10054 296 ----NSLLLWGMSAAVFTVGEI-IYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVIL 369 (395)
T ss_pred ----hHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHH
Confidence 112223333444444433 223444567788899999999988755 67789999999999999999876666555
Q ss_pred HHHHHHHHHH
Q 012646 407 GWVTIMTIFV 416 (459)
Q Consensus 407 ~~~~~~~~~~ 416 (459)
+.+...+.++
T Consensus 370 ~~~~~~~~~~ 379 (395)
T PRK10054 370 ALAIVAAWLL 379 (395)
T ss_pred HHHHHHHHHH
Confidence 4444444333
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-29 Score=238.24 Aligned_cols=355 Identities=14% Similarity=0.139 Sum_probs=244.2
Q ss_pred CCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhc-----Ccchh-hhHHHHHHHHHHHHHHHH---hhHHHHHHHHHH
Q 012646 22 NNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDY-----GRRAS-IICGGISFLLGAALNAAA---ANLAMLLTGRIL 92 (459)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grk~~-l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l 92 (459)
.++.|.|.++++.+ +.....+ ++.+++|+++||+ |||+. ++.+.++.+++..++++. ++++.+.+.+++
T Consensus 39 l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l 116 (491)
T PRK11010 39 MTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVV 116 (491)
T ss_pred HHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 44558898899987 4444444 6899999999999 99885 667888887887777775 478899999999
Q ss_pred hhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccc-cchhHHHHHhhHHHHHHHHHhhhcc
Q 012646 93 LGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLE-TWGWRLSLGLAAAPALMMTVGGILL 171 (459)
Q Consensus 93 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~-~~gwr~~f~~~~~~~~~~~~~~~~~ 171 (459)
.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+ .....+ ..|||..|++.++..++..+..+++
T Consensus 117 ~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l--~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~ 194 (491)
T PRK11010 117 IAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGL--ALWLADRYLGWQGMYWLMAALLIPCIIATLLA 194 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHhcccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999988 444444 3699999999988877776666667
Q ss_pred CCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHH
Q 012646 172 PETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSI 251 (459)
Q Consensus 172 ~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (459)
||+++.. ++ ++. . + +....++++.++++..+....... . ........
T Consensus 195 ~e~~~~~---~~-~~~---------------~-~---------~~~~~~l~~~~~~~~~~~~ll~~~---l-~~~~~~~~ 241 (491)
T PRK11010 195 PEPTDTI---PV-PKT---------------L-E---------QAVVAPLRDFFGRNNAWLILLLIV---L-YKLGDAFA 241 (491)
T ss_pred CCCcccc---cc-ccc---------------h-h---------hhHHHHHHHHHcCcCHHHHHHHHH---H-HHHHHHHH
Confidence 8865210 00 000 0 0 000123445554443222222221 1 11122233
Q ss_pred HHhHHHH-HHhcCCCCchhHHHHH-HHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCcccc
Q 012646 252 LFYAPVL-FQSMGFKGDASLYSSA-MTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELS 329 (459)
Q Consensus 252 ~~~~~~~-~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (459)
..+.+.+ .++.|++..+.+.... ...++.+++.++.|+++||+++|+.+..+..+..+....+..... .
T Consensus 242 ~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~---------~ 312 (491)
T PRK11010 242 MSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI---------T 312 (491)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---------c
Confidence 3344444 4568999999998874 556799999999999999999988776655544444333222110 0
Q ss_pred chhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 012646 330 KSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWV 409 (459)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (459)
..+.+.......+.....+...... +++..+..+++.+++..|+.+....+|..+++.+.|.+.+..|+...+.+..++
T Consensus 313 ~~~~~~l~~~~~l~~~~~g~~~~~~-~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~ 391 (491)
T PRK11010 313 DKNLYSMGAAVFFENLCGGMGTAAF-VALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAA 391 (491)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 0111222222222222222222222 466678889999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHhccCCC
Q 012646 410 TIMTIFVYFFLPET 423 (459)
Q Consensus 410 ~~~~~~~~~~~~~~ 423 (459)
.+.+++.....+++
T Consensus 392 ~l~~l~~~~~~~~~ 405 (491)
T PRK11010 392 AVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHhc
Confidence 77777777666543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=236.58 Aligned_cols=351 Identities=12% Similarity=0.104 Sum_probs=238.8
Q ss_pred hhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHH---HHHhhHHHHH
Q 012646 11 DVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALN---AAAANLAMLL 87 (459)
Q Consensus 11 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~---~~~~~~~~l~ 87 (459)
+.......|..++++|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++++++ .++++++.++
T Consensus 42 ~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll 121 (438)
T PRK10133 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFL 121 (438)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3344445556688999999999999999999999999999999999999999999999999999885 4678999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccc-c--------------c---c--
Q 012646 88 TGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQK-L--------------E---T-- 147 (459)
Q Consensus 88 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~-~--------------~---~-- 147 (459)
++|+++|++.+...+....++.|+.++++|.+.+++.+..+.+|..+++.++..... . + .
T Consensus 122 ~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~ 201 (438)
T PRK10133 122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYK 201 (438)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHH
Confidence 999999999999999999999998877777778999999999999999988432110 0 0 0
Q ss_pred ----chhHHHHHhhH-HHHHHHHHh-hhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcch
Q 012646 148 ----WGWRLSLGLAA-APALMMTVG-GILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPF 221 (459)
Q Consensus 148 ----~gwr~~f~~~~-~~~~~~~~~-~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (459)
.+||++|+... +..++..+. ...+||.+. +++.+ +...+...+.
T Consensus 202 ~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~~~--------------------------~~~~~~~~~~ 251 (438)
T PRK10133 202 HSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----DNHSD--------------------------AKQGSFSASL 251 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----ccccc--------------------------ccccchhhhH
Confidence 35777776433 333333222 223454221 00000 0000011223
Q ss_pred HHHhccCchhHHHHHHHHHHhhhhcchHHHHHhHHHH-HHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchh
Q 012646 222 RNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVL-FQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRAL 299 (459)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 299 (459)
+++++++..+...+. .++..........|.+.+ .++ +|+++.+.+.......++.++++++.+++.||+++|+.
T Consensus 252 ~~ll~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~ 327 (438)
T PRK10133 252 SRLARIRHWRWAVLA----QFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV 327 (438)
T ss_pred HHHHhCchHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 455555543322222 222222333344455555 454 89999999999999999999999999999999999998
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHH
Q 012646 300 LISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVN 379 (459)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 379 (459)
+..+..+..+.+.+.... + . . ..+....+.+.+.+..+++. ++...|..|+ +.+++.++.. ..
T Consensus 328 l~~~~~~~~~~~~~~~~~-----------~-~-~-~~~~~~~l~glg~~~i~P~~-~s~a~~~~~~-~~~~as~l~~-~~ 390 (438)
T PRK10133 328 LAAYALIAMALCLISAFA-----------G-G-H-VGLIALTLCSAFMSIQYPTI-FSLGIKNLGQ-DTKYGSSFIV-MT 390 (438)
T ss_pred HHHHHHHHHHHHHHHHHc-----------C-C-h-HHHHHHHHHHHHHHHHHHHH-HHHHHcccch-hhccchhHHh-HH
Confidence 887766655444333221 1 1 1 22334455566666554444 5666777764 4677888776 45
Q ss_pred HHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHHH
Q 012646 380 LFFTFVIAQIFLTLLCSFK-FGIFLFFAGWVTIM 412 (459)
Q Consensus 380 ~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 412 (459)
.+|+.++|.+.|.+.|..+ ....+++..++.+.
T Consensus 391 ~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~ 424 (438)
T PRK10133 391 IIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV 424 (438)
T ss_pred hccchHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 5788999999999998876 44444444433333
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-29 Score=230.82 Aligned_cols=331 Identities=12% Similarity=0.082 Sum_probs=234.3
Q ss_pred hhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHH---HhhHHHHHHH
Q 012646 13 YLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAA---AANLAMLLTG 89 (459)
Q Consensus 13 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~ 89 (459)
......+..++++|+++.+.|++.+.+++++.+++++.|++.||+|||+++..+.++++++.+++.. .++++.+++.
T Consensus 21 ~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~ 100 (410)
T TIGR00885 21 ITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVG 100 (410)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 3344556668899999999999999999999999999999999999999999999999999988654 3689999999
Q ss_pred HHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhcccc------------------------
Q 012646 90 RILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKL------------------------ 145 (459)
Q Consensus 90 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~------------------------ 145 (459)
|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+++.++......
T Consensus 101 ~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (410)
T TIGR00885 101 LFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHS 180 (410)
T ss_pred HHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999885433211
Q ss_pred ccchhHHHHHhhHHHHHHHHHhhhc--cCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHH
Q 012646 146 ETWGWRLSLGLAAAPALMMTVGGIL--LPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRN 223 (459)
Q Consensus 146 ~~~gwr~~f~~~~~~~~~~~~~~~~--~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (459)
+..+||++|++.+++.++..++..+ .||.++ .++ ++...+.+.++
T Consensus 181 ~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-------~~~--------------------------~~~~~~~~~~~ 227 (410)
T TIGR00885 181 DLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-------SDA--------------------------KQISFSASLSR 227 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-------ccc--------------------------ccccchhhHHH
Confidence 1247999999988877765544433 343210 000 00000112334
Q ss_pred HhccCchhHHHHHHHHHHhhhhcchHHHHHhHHHHHHhc--CCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhh
Q 012646 224 ILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSM--GFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLI 301 (459)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 301 (459)
.++++..+. ..+..++..........+.+.+.++. +.+................+|+++++++.||+++|+.+.
T Consensus 228 ~~~~~~~~~----~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~ 303 (410)
T TIGR00885 228 LARIRHYRE----GVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLM 303 (410)
T ss_pred HHhChhHHH----HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 444444332 22223333333444556667666653 333344454566666788999999999999999999887
Q ss_pred hhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHH
Q 012646 302 SGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLF 381 (459)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 381 (459)
+......+..++..... .........+.+.+.+..+ |..++...+..+++.+..+.++.... +
T Consensus 304 i~~~~~~~~~ll~~~~~--------------~~~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~~--~ 366 (410)
T TIGR00885 304 AYAIIGMALCLGSIFAG--------------GHVGLYCLTLCSAFMSLMF-PTIYGIALKGLGQDTKYGAAGLVMAI--I 366 (410)
T ss_pred HHHHHHHHHHHHHHHcC--------------ChHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHHHHHHHH--h
Confidence 77666666555554421 1123444455555665555 55577777888876654455555543 9
Q ss_pred HHHHHHHHHHHHHhhc
Q 012646 382 FTFVIAQIFLTLLCSF 397 (459)
Q Consensus 382 g~~~~~~~~~~~~~~~ 397 (459)
|+.+.|++.|.+.|..
T Consensus 367 Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 367 GGGIVPPLQGFIIDMK 382 (410)
T ss_pred ccchHHHHHHHHHHHh
Confidence 9999999999999954
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=226.50 Aligned_cols=327 Identities=16% Similarity=0.120 Sum_probs=230.3
Q ss_pred cccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q 012646 17 KHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVG 96 (459)
Q Consensus 17 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 96 (459)
..+...+++|+|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+.+ .+++.+.+++.|++.|++
T Consensus 22 ~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g 100 (355)
T TIGR00896 22 LLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVG 100 (355)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHH
Confidence 3445678899999999999999999999999999999999999999999999988888887 788999999999999999
Q ss_pred hhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccCCChh
Q 012646 97 IGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPN 176 (459)
Q Consensus 97 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~es~~ 176 (459)
.+...+....++.|++| ++|++++++...+.++|..+++.+..........+||+.|.+.++..++... .++||.++
T Consensus 101 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--~~~~~~~~ 177 (355)
T TIGR00896 101 IAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--AWIPQVRR 177 (355)
T ss_pred HHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HHhhhhcc
Confidence 99888888888999886 6899999999999999999998884322211112499998877665443322 23444321
Q ss_pred hHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHhHH
Q 012646 177 SLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAP 256 (459)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (459)
. .+ ++++..+...++.++++.. +...+..+.....+.....+.|
T Consensus 178 ~----~~----------------------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~lp 221 (355)
T TIGR00896 178 R----VA----------------------------ANQTTTRLTPVRIWRSPLA----WQVTVFFGLQSGLYYSLIGWLP 221 (355)
T ss_pred c----cC----------------------------CCCCCCCCCCchhhcCHhH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 0000001123344443332 2222222333334455667888
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcC-CchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhH
Q 012646 257 VLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLG-RRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSIL 335 (459)
Q Consensus 257 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (459)
.++++.|++..+.+.......++.++++++.|++.||++ ||+.+..+..+..++.+.+.... .. . .
T Consensus 222 ~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-~-~ 288 (355)
T TIGR00896 222 AILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP-----------MH-G-L 288 (355)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh-----------hh-H-H
Confidence 888888999999999999999999999999999999995 55565566555555554443321 11 1 1
Q ss_pred HHHHHHHHHHHHhhcccccccceec-ccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhch
Q 012646 336 VVVVICLFVLAFGWSWGPLGWTVPS-EIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFK 398 (459)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 398 (459)
.. ...+++.+.+... +....... +..+++.+++..++.+..++++..++|.+.|.+.|+.+
T Consensus 289 ~~-~~~l~g~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 289 WA-WALVLGLGQGGAF-PLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HH-HHHHHHHhhhhHh-HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 2333444443322 22223333 33456677899999999999999999999999998876
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=233.56 Aligned_cols=339 Identities=13% Similarity=0.103 Sum_probs=224.8
Q ss_pred hhhhhhhhhccc-ccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHh-hHHH
Q 012646 8 FFHDVYLKKKHA-HENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAA-NLAM 85 (459)
Q Consensus 8 ~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~-~~~~ 85 (459)
|..........+ ..++++|+|+.+.+++.+.+.+++.+++++.|+++||+|||+.+..+.++..++.+++++++ +++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (366)
T TIGR00886 14 FSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSV 93 (366)
T ss_pred HHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 333344444455 37789999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccc--------cccchhHHHH-Hh
Q 012646 86 LLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQK--------LETWGWRLSL-GL 156 (459)
Q Consensus 86 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~--------~~~~gwr~~f-~~ 156 (459)
+++.|+++|++.+ ..+....+++|++|+++|+++.++.....++|..+++.++..... ....+||+.| +.
T Consensus 94 ~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~ 172 (366)
T TIGR00886 94 LLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIV 172 (366)
T ss_pred HHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHH
Confidence 9999999999865 456678899999999999999999987777777666655321111 0134799999 44
Q ss_pred hHHHHHHHH-HhhhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHH
Q 012646 157 AAAPALMMT-VGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVM 235 (459)
Q Consensus 157 ~~~~~~~~~-~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (459)
.++...+.. +...+.+|+|+.. + ++.+. +..+... . .+++......+.++++..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~-----~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~---- 228 (366)
T TIGR00886 173 PAGILLLPALLIFFVGADTPPGK----P-ATGKL-----SFKGARW-S---------VGTGALGDQLKVFRDRHTW---- 228 (366)
T ss_pred HHHHHHHHHHHHHHhcccCCccc----c-cchhc-----ccccccc-c---------ccchhHHHHHHHHhccchh----
Confidence 454444433 3344567665311 0 00000 0000000 0 0000001233344444322
Q ss_pred HHHHHHhhhhcchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHH
Q 012646 236 AIFMPMFQILTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIV 314 (459)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 314 (459)
...+..+...........+.|.++++ +|+++.+.+.......+..+++.++.+++.||+++|+....+......+..++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~ 308 (366)
T TIGR00886 229 ILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLV 308 (366)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHH
Confidence 22222232333344566677777765 79999999988888999999999999999999999887777666555554444
Q ss_pred HHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHH
Q 012646 315 SIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFF 382 (459)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 382 (459)
..... ++...+.......+.....+..... .+...++..| +++|++.|+.+..+++|
T Consensus 309 ~~~~~---------~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 309 VLGLV---------SPLSLAVFIVLFVALFFFSGAGNGS-TFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HhcCC---------CcchHHHHHHHHHHHHHHhccccch-hhhcchhhch-hhcccHHHHHHHhccCC
Confidence 33210 0002222333333344444444333 3567778887 68999999999887765
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=229.50 Aligned_cols=329 Identities=16% Similarity=0.181 Sum_probs=231.1
Q ss_pred cccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhh
Q 012646 19 AHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIG 98 (459)
Q Consensus 19 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 98 (459)
+...+++|+|+.+.+++.+.+.++..++++++|+++||+|||+++..+..+..++.+++.++++++.+++.|++.|++.+
T Consensus 32 ~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 111 (394)
T PRK11652 32 ADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTG 111 (394)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhh
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHH-hhhccCCChhh
Q 012646 99 FGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTV-GGILLPETPNS 177 (459)
Q Consensus 99 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~-~~~~~~es~~~ 177 (459)
...+....+..|.+++++|+++.++...+..+|..++|.+ .....+..|||+.|++.++..++..+ ..+++||+++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i--~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 189 (394)
T PRK11652 112 VGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLI--GGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPA 189 (394)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCcc
Confidence 8888888899999999999999999999999999999988 44445557899999998877665544 34557876521
Q ss_pred HHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHhHHH
Q 012646 178 LIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPV 257 (459)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (459)
. +++.+ .+..+++.++++..+...... +........+..+.+.
T Consensus 190 ~---~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 232 (394)
T PRK11652 190 D---ARRTR------------------------------VLASYRTLLSNRRFNCYLLML----IGTLAGIAVFEACSGV 232 (394)
T ss_pred c---cchhH------------------------------HHHHHHHHHcChHHHHHHHHH----HHHHHHHHHHHHhChH
Confidence 0 00000 011233344433322222211 1122223334445565
Q ss_pred HHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHH
Q 012646 258 LFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILV 336 (459)
Q Consensus 258 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (459)
+.++ +|+++.+.+.......++.+++..+.+++.||.+++.. .......+..+.+...... .....+..
T Consensus 233 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 302 (394)
T PRK11652 233 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPGWF--------GVMNVWTL 302 (394)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh--------ccccHHHH
Confidence 6665 89998888888888888888899999999999883322 2222222222221111000 01122333
Q ss_pred HHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhch
Q 012646 337 VVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFK 398 (459)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 398 (459)
.....+.+.+.+... |....+..|..| ++++++.++.+....+|+.+++.+.+.+.....
T Consensus 303 ~~~~~~~~~g~~~~~-~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~ 362 (394)
T PRK11652 303 LVPAALFFFGAGMLF-PLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQ 362 (394)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCch
Confidence 344444445555433 333556667776 678999999999999999999999888765543
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-28 Score=227.11 Aligned_cols=348 Identities=13% Similarity=0.085 Sum_probs=245.3
Q ss_pred hhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhh----hHHHHHHHHHHHHHHHHhhHHHHH
Q 012646 12 VYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASI----ICGGISFLLGAALNAAAANLAMLL 87 (459)
Q Consensus 12 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l----~~~~~~~~~~~~~~~~~~~~~~l~ 87 (459)
.+.|-.+.. .+++|+|..++|++.+.+.+...++++++|+++||+|||+.. ..+..+..+ ..+..+++++.++
T Consensus 22 ~~~p~l~~~-l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~ 98 (382)
T TIGR00902 22 IFLPFFPAW-LKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLF 98 (382)
T ss_pred HHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHH
Confidence 333443333 356899999999999999999999999999999999985433 222222222 2444678999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHh
Q 012646 88 TGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVG 167 (459)
Q Consensus 88 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~ 167 (459)
+.|.++|.+.+...|...++..|+ +++|++..+......++|.+++|++ ++...+.+|||..|++.+....+..+
T Consensus 99 ~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l--~g~l~~~~g~~~~f~~~~~~~~~~~~- 173 (382)
T TIGR00902 99 IAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSAL--FGGLIGMFDEQNILAILTAGLAFMLI- 173 (382)
T ss_pred HHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHH--HHHHHHHcChhHHHHHHHHHHHHHHH-
Confidence 999999999988889988887765 4678999999999999999999998 55666778999999887655333332
Q ss_pred hhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcc
Q 012646 168 GILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTG 247 (459)
Q Consensus 168 ~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (459)
.+.++|+++. +++ ++ +++++...+.++.+|++.. +...+..+.....
T Consensus 174 ~~~~~~~~~~---~~~-~~-------------------------~~~~~~~~~~~~~l~~~~~----~~~l~~~~l~~~~ 220 (382)
T TIGR00902 174 GFLIKPTIPP---KDA-IP-------------------------EDESQGDSAFIALLKNPMN----LRFLAAVCLIQGA 220 (382)
T ss_pred HHHcCCCCCC---Ccc-cc-------------------------ccccccchhHHHHHcChHH----HHHHHHHHHHHHH
Confidence 2333443200 000 00 0000111234555555442 2222223333334
Q ss_pred hHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCcc
Q 012646 248 INSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQE 327 (459)
Q Consensus 248 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (459)
......+.|.+.++.|.++.+.+.......++.+++..+.+++.||+++|+.+..+.+...+....+...
T Consensus 221 ~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~---------- 290 (382)
T TIGR00902 221 HAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI---------- 290 (382)
T ss_pred HHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH----------
Confidence 5556667787888899999999999999999999999999999999999999988888888777666543
Q ss_pred ccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHH-HHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 012646 328 LSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVA-VNLFFTFVIAQIFLTLLCSFKFGIFLFFA 406 (459)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (459)
++.+..+....+.+..++....+. ..++++. |++.+++++++++. ...+|..+++.+.|.+.|+.+...++..+
T Consensus 291 ---~~~~~~~~~q~l~g~~~~~~~~~~-~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~ 365 (382)
T TIGR00902 291 ---EAFPLIFLLQILHCGTFAVCHLAA-MRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMA 365 (382)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 334455556666677776655544 5677777 99999999999874 56789999999999999999875555444
Q ss_pred HHHHHHHHHH
Q 012646 407 GWVTIMTIFV 416 (459)
Q Consensus 407 ~~~~~~~~~~ 416 (459)
.+ .+.+.++
T Consensus 366 ~~-~~~~~~~ 374 (382)
T TIGR00902 366 II-AAAAFFL 374 (382)
T ss_pred HH-HHHHHHH
Confidence 43 3444433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-28 Score=226.10 Aligned_cols=369 Identities=9% Similarity=0.058 Sum_probs=239.2
Q ss_pred hhhhhhhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCc-chhhhHHHHHHHHHHHHHHHHhhH
Q 012646 5 FQKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGR-RASIICGGISFLLGAALNAAAANL 83 (459)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-k~~l~~~~~~~~~~~~~~~~~~~~ 83 (459)
+..+-...+.+...+...+++|++..++|++.+.+.++..++++++|.++||+|| |+++..+.++..++..+..+.+++
T Consensus 13 ~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~ 92 (418)
T TIGR00889 13 LQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTP 92 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 3344445566777777788899999999999999999999999999999999965 778888888888888888899999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhh--------hccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHH
Q 012646 84 AMLLTGRILLGVGIGFGNQAVPLYLS--------EMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLG 155 (459)
Q Consensus 84 ~~l~~~r~l~G~~~~~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~ 155 (459)
+.+++.|++.|++.+...+...++.. |......|.+..| .+|.+++|.++. .......|+ +|+
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g--~l~~~~~~~-~f~ 163 (418)
T TIGR00889 93 AGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVS--LLDIELSNI-QLY 163 (418)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHH--HhcccchhH-HHH
Confidence 99999999999987777666655432 2233334455555 356666666632 222222354 355
Q ss_pred hhHHHHHHHHHhhhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHH
Q 012646 156 LAAAPALMMTVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVM 235 (459)
Q Consensus 156 ~~~~~~~~~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (459)
+.++..++..++.+++||+|+.. ++.+. + .. +..+...++.+|++.......
T Consensus 164 ~~~~~~~~~~~~~~~~~e~~~~~---~~~~~--------------~--~~---------~~~~~~~~~~~k~~~~~~~~~ 215 (418)
T TIGR00889 164 ITAGSSALLGVFALTLPDIPVAK---STAKM--------------S--IK---------VMLGLDAFILFKNKRMAIFFF 215 (418)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCc---ccccc--------------C--HH---------HHhhhhHHHHhcCCCeeeHHH
Confidence 66665555555556788876210 00000 0 00 000112234444444322222
Q ss_pred HHHHHHhhhhcchHHHHHhHHHHHHhcCCCC--------chhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHH
Q 012646 236 AIFMPMFQILTGINSILFYAPVLFQSMGFKG--------DASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQM 307 (459)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 307 (459)
..++ ..........+.+.+.++.|.++ ...+.......+..+++.+..+++.||+|+|+.+..+.++.
T Consensus 216 ~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~ 291 (418)
T TIGR00889 216 FSML----LGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAW 291 (418)
T ss_pred HHHH----HHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 2222 12222334455566666666543 55688888889999999999999999999999998888877
Q ss_pred HHHHHHHHHHHhhhcCCCccccch-hhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHH-HHHHHHHHH
Q 012646 308 ITCQVIVSIILGLKFGPNQELSKS-FSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITV-AVNLFFTFV 385 (459)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~ 385 (459)
.++..++.... +.. ..+..+...++.+.+.+.. .+....++.|.+|++.|++++|+.+ ....+|..+
T Consensus 292 ~v~~~l~~~~~----------~~~~~~~~l~l~~~l~g~~~~~~-~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~i 360 (418)
T TIGR00889 292 ALRFGFFAYGD----------PEYFGYALLFLSMIVYGCAFDFF-NISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLL 360 (418)
T ss_pred HHHHHHHHHcC----------cchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHH
Confidence 76655444321 001 1122333344444444433 2333467789999999999999997 567899999
Q ss_pred HHHHHHHHHhhc------hhHHHHH-HHHHHHHHHHHHHhccCCCCC
Q 012646 386 IAQIFLTLLCSF------KFGIFLF-FAGWVTIMTIFVYFFLPETKG 425 (459)
Q Consensus 386 ~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 425 (459)
+|.+.|.+.++. +|...+. .+++..+.+++.+++.+++++
T Consensus 361 Gp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 361 GYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 999999999884 3555444 444445555566666666543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=225.67 Aligned_cols=358 Identities=12% Similarity=0.044 Sum_probs=217.7
Q ss_pred hhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHH---HHhh-----
Q 012646 11 DVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNA---AAAN----- 82 (459)
Q Consensus 11 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~---~~~~----- 82 (459)
..+.+-.+...++++|+|+.+.|++.+.+.++..++++++|+++||+|||++++.+..+..++..... .++.
T Consensus 27 ~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (420)
T PRK09528 27 SSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNI 106 (420)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666778999999999999999999999999999999999999999887766655443221 1111
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHH
Q 012646 83 LAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPAL 162 (459)
Q Consensus 83 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~ 162 (459)
....++.+++.|.+.....+....+..+ . ++++++.++......++|..++|+++... .+ .+|++.|++.++.++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l--~~-~~~~~~f~~~~~~~~ 181 (420)
T PRK09528 107 LLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGIL--FN-INPQINFWLGSGSAL 181 (420)
T ss_pred HHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHH--Hh-cCchHhHHHHHHHHH
Confidence 1112223333333333333333333222 2 24567788888888899999999884333 22 379999999888877
Q ss_pred HHHHhhhccC-CChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHH
Q 012646 163 MMTVGGILLP-ETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPM 241 (459)
Q Consensus 163 ~~~~~~~~~~-es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (459)
+..+..++++ |.++....+++ + ..++++...+...+.++++..+...+......
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~--~-----------------------~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~ 236 (420)
T PRK09528 182 ILLVLLFFAKPDAPSTAKVANA--L-----------------------GANASAVSLKDALALLKLPKFWFLVLYVIGVA 236 (420)
T ss_pred HHHHHHhcccccccchhhhccc--h-----------------------hcccccccHHHHHHHccCCCeEeehHHHHHHH
Confidence 7766655543 33210000000 0 00000000112233444444332222111111
Q ss_pred hhhhcchHHHHHhHHHHHHh----cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHH
Q 012646 242 FQILTGINSILFYAPVLFQS----MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSII 317 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (459)
..+.....+.|.+..+ .+.+..+.+.......++..++.++.|++.||+++|+.+..+..+..+...++.+.
T Consensus 237 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~ 312 (420)
T PRK09528 237 ----CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA 312 (420)
T ss_pred ----HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc
Confidence 1122222234444332 35566677888888888999999999999999999999887777766665554432
Q ss_pred HhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHH-HHHHHHHHHHHHHHHHHHHHhh
Q 012646 318 LGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSI-TVAVNLFFTFVIAQIFLTLLCS 396 (459)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~~~~~~~~ 396 (459)
.+.+..+....+.+........ ....+.+|.+|++.+++..+. .++...+|..+++.+.|.+.|.
T Consensus 313 -------------~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~ 378 (420)
T PRK09528 313 -------------TGPLEVSILKLLHAFEVPFLLV-GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS 378 (420)
T ss_pred -------------ccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence 1223333333333333332222 224666788899999988766 6777889999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 012646 397 FKFGIFLFFAGWVTIMTIFV 416 (459)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~ 416 (459)
.|+...+...+++.++..++
T Consensus 379 ~G~~~~f~~~~~~~~i~~~~ 398 (420)
T PRK09528 379 IGFQGTYLILGGIVLLFTLI 398 (420)
T ss_pred hCchHHHHHHHHHHHHHHHH
Confidence 88876666555554443333
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-27 Score=219.23 Aligned_cols=349 Identities=14% Similarity=0.124 Sum_probs=232.2
Q ss_pred CcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhc-----Ccch-hhhHHHHHHHHHHHHHHHH---hhHHHHHHHHHHh
Q 012646 23 NYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDY-----GRRA-SIICGGISFLLGAALNAAA---ANLAMLLTGRILL 93 (459)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grk~-~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~ 93 (459)
++.|+|.+++|++...... .+..+++|+++||+ |||| .+..+.++.+++..+.++. ++++.+++..++.
T Consensus 27 ~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~ 104 (402)
T PRK11902 27 TVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLV 104 (402)
T ss_pred HHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 3459999999999777776 69999999999999 8875 7888888888888887776 4577888888888
Q ss_pred hhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhcccccc-chhHHHHHhhHHHHHHHHHhhhccC
Q 012646 94 GVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLET-WGWRLSLGLAAAPALMMTVGGILLP 172 (459)
Q Consensus 94 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~-~gwr~~f~~~~~~~~~~~~~~~~~~ 172 (459)
++..+...++..+++.|++|+++|+++.++...+..+|.++++.+. ....+. .|||..|++.++..++..+..+++|
T Consensus 105 ~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~--~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~ 182 (402)
T PRK11902 105 AFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLA--LWLADRVLGWGNTYLLMAGLMLAGALTTLWAP 182 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHH--HHHHhcccCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9989999999999999999999999999999999999999999883 333443 5899999998888776655556677
Q ss_pred CChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHH
Q 012646 173 ETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSIL 252 (459)
Q Consensus 173 es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (459)
|+++.. ++.++. . ++.++.+++.++++..+.......+...... ....
T Consensus 183 e~~~~~---~~~~~~-----------------~---------~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~---~~~~ 230 (402)
T PRK11902 183 EPEVPA---RPPRSL-----------------G---------EAVVGPLRDFFSRRGAWALLLLIVLYKLGDA---FAGS 230 (402)
T ss_pred CCcccc---cccchh-----------------H---------HHHHHHHHHHHhCcCHHHHHHHHHHHHhHHH---HHHH
Confidence 765210 000000 0 0001234556666654433332222221111 1112
Q ss_pred HhHHHHHHhcCCCCchhHHHHHHHH-HHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccch
Q 012646 253 FYAPVLFQSMGFKGDASLYSSAMTG-AVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKS 331 (459)
Q Consensus 253 ~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (459)
...+++.+++|+++.+.+......+ ++.+++.++.+++.||+++|+.+..+.....+..+.+..... ..+
T Consensus 231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~---------~~~ 301 (402)
T PRK11902 231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAV---------TPK 301 (402)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---------cCC
Confidence 3334455668999888888876554 468999999999999999998877666555544433322110 011
Q ss_pred hhhHHHHHHHH----HHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 012646 332 FSILVVVVICL----FVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAG 407 (459)
Q Consensus 332 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (459)
+.+.......+ .+...+ ...+....++.+.+|.+. .++.+....++...++.+.|.+.|+.|+...+...+
T Consensus 302 ~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~ 376 (402)
T PRK11902 302 HLWTMALAIGIENLCGGMGTA-AFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTV 376 (402)
T ss_pred cHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 12222222221 122222 222333456666666554 455555667777777788999999999888777777
Q ss_pred HHHHHHHHHHhccC
Q 012646 408 WVTIMTIFVYFFLP 421 (459)
Q Consensus 408 ~~~~~~~~~~~~~~ 421 (459)
++.+.++++....+
T Consensus 377 ~~~~~~~~~~~~~~ 390 (402)
T PRK11902 377 VIALPGLALLWLMR 390 (402)
T ss_pred HHHHHHHHHHHHHh
Confidence 77766665554433
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=218.91 Aligned_cols=345 Identities=12% Similarity=0.064 Sum_probs=232.4
Q ss_pred hhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcc----hhhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 012646 13 YLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRR----ASIICGGISFLLGAALNAAAANLAMLLT 88 (459)
Q Consensus 13 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk----~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 88 (459)
+.+-.+... +++|.|..++|++.+.+.++..++++++|+++||+||| +.+..+..+. .......+++++.+++
T Consensus 23 ~~p~l~~~l-~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i 99 (382)
T PRK11128 23 FLPFWSVWL-KGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFV 99 (382)
T ss_pred HhhhHHHHH-HhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHH
Confidence 333333333 56799999999999999999999999999999999994 3333222222 2233344688999999
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhh
Q 012646 89 GRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGG 168 (459)
Q Consensus 89 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~ 168 (459)
.|++.|++.+...+...+++.++ +++|+++.+......++|.++||++ ++...+.+|||..|++.++..++..+..
T Consensus 100 ~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~l--gg~l~~~~g~~~~f~~~~~~~~~~~~~~ 175 (382)
T PRK11128 100 AIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSAL--TGKLVSWFGEQAILWILTAGVASMLLGQ 175 (382)
T ss_pred HHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHH--HHHHHHHcChhHHHHHHHHHHHHHHHHH
Confidence 99999999998999888888877 3567888888898999999999999 6666667799999988776555444444
Q ss_pred hccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcch
Q 012646 169 ILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGI 248 (459)
Q Consensus 169 ~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (459)
.+.||.++ +++.+ +..++...++++.+|++..+.......+. ....
T Consensus 176 ~~~~~~~~----~~~~~--------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~l~----~~~~ 221 (382)
T PRK11128 176 LLRPTIMP----QGESR--------------------------QQESAGWPAWKALLKEPTVWRFLLCVSLL----QGSH 221 (382)
T ss_pred HccCCCCC----ccccc--------------------------cccccccchHHHHHcChhHHHHHHHHHHH----HHHh
Confidence 44454321 00000 00001123456666665433322222222 2223
Q ss_pred HHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccc
Q 012646 249 NSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQEL 328 (459)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (459)
.....+.|.+.++.|.++.+.+.......++.++..++.+++.||+++|+.+..+.....+....+...
T Consensus 222 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~----------- 290 (382)
T PRK11128 222 AAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST----------- 290 (382)
T ss_pred HhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-----------
Confidence 344555566777789998899999888889999999999999999999999888777766665544332
Q ss_pred cchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHH-HHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 012646 329 SKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAV-NLFFTFVIAQIFLTLLCSFKFGIFLFFAG 407 (459)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (459)
++.+..+....+.+...+...... ..+..+. +++++++.+++.+.. ..+|..++|.+.|.+.|..+...++ ..+
T Consensus 291 --~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~-~~~ 365 (382)
T PRK11128 291 --TALPWLIVIQILHCGTFTVCHLAA-MRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFW-VMA 365 (382)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHH
Confidence 234444445555555555443333 4555565 556678888888744 5667789999999999998864333 333
Q ss_pred HHHHHHH
Q 012646 408 WVTIMTI 414 (459)
Q Consensus 408 ~~~~~~~ 414 (459)
.+.+.++
T Consensus 366 ~~~~~~~ 372 (382)
T PRK11128 366 LVALPAL 372 (382)
T ss_pred HHHHHHH
Confidence 3334333
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=246.82 Aligned_cols=349 Identities=12% Similarity=-0.016 Sum_probs=230.8
Q ss_pred hhhhhhhhhhhhcccccCCcccCC--chhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHH---H
Q 012646 5 FQKFFHDVYLKKKHAHENNYCKYD--NQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNA---A 79 (459)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~---~ 79 (459)
+..+.+..+.....+....+++.+ ....+++.+++.+++.++++++|+++||+|||++++++.++..++.++.. .
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~ 99 (1146)
T PRK08633 20 LNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYY 99 (1146)
T ss_pred HhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333433333333333333334443 45579999999999999999999999999999999998877666655443 4
Q ss_pred HhhHHHHHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccc-------cchhHH
Q 012646 80 AANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLE-------TWGWRL 152 (459)
Q Consensus 80 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~-------~~gwr~ 152 (459)
+++++.+++.|+++|++.+...++..+++.|++|+++|++++++...+..+|.++|++++....... ..+|++
T Consensus 100 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~ 179 (1146)
T PRK08633 100 LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIA 179 (1146)
T ss_pred HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchH
Confidence 5789999999999999999999999999999999999999999999999999999999954333220 123444
Q ss_pred HHHhhHHH-HHHHHHhhhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchh
Q 012646 153 SLGLAAAP-ALMMTVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRP 231 (459)
Q Consensus 153 ~f~~~~~~-~~~~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (459)
.+.+..+. .++.+++.+.+||+|++...+.+.++ .. .. +.....++.+++++..+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~----~~----------~~~~~~~~~l~~~~~~~ 235 (1146)
T PRK08633 180 PAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKK----------YL----FP----------KLLWRNLKLLRSDRVLW 235 (1146)
T ss_pred HHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccc----------cc----cH----------HHHHHHHHHHhcCcHHH
Confidence 44443333 33334445567877642111100000 00 00 00011233344333322
Q ss_pred HHHHHHHHHHhhhhcchHHHHHhHHHHHH-hcCCCCc-hhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHH
Q 012646 232 QLVMAIFMPMFQILTGINSILFYAPVLFQ-SMGFKGD-ASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMIT 309 (459)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 309 (459)
. ..+..+...........+.|.++. .+|++.. ..+++.....++.+++.++.+++.||+++++.+.++.++.++
T Consensus 236 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~ 311 (1146)
T PRK08633 236 L----AIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLAL 311 (1146)
T ss_pred H----HHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHH
Confidence 2 222222222223344555666654 4899988 889999999999999999999999999988887777666666
Q ss_pred HHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHH
Q 012646 310 CQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQI 389 (459)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 389 (459)
+.+++... .+.+..++..++++.+.+....+. .+++.+..|++.||+++|+.+.+..++..+++.+
T Consensus 312 ~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~ 377 (1146)
T PRK08633 312 SLFLLPTA-------------PSLASVLVLFFLFGFSAGLFIVPL-NALIQFRAPEKELGKVLAANNFLQNVGMLLFLAL 377 (1146)
T ss_pred HHHHHHHh-------------hhHHHHHHHHHHHHHHHHHhhHHH-HHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHH
Confidence 55554432 123333444444455544443343 5777899999999999999999999998877777
Q ss_pred HHHHHh
Q 012646 390 FLTLLC 395 (459)
Q Consensus 390 ~~~~~~ 395 (459)
.+.+..
T Consensus 378 ~~~l~~ 383 (1146)
T PRK08633 378 TTLFSG 383 (1146)
T ss_pred HHHHHH
Confidence 665543
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-27 Score=221.80 Aligned_cols=336 Identities=15% Similarity=0.147 Sum_probs=224.8
Q ss_pred cccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhh----cCc-chhhhHHHHHHHHHHHHHHHHhh------HHH
Q 012646 17 KHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRD----YGR-RASIICGGISFLLGAALNAAAAN------LAM 85 (459)
Q Consensus 17 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Gr-k~~l~~~~~~~~~~~~~~~~~~~------~~~ 85 (459)
..+...+++|+++.++|++.++..+..++..|+.|+++|| +|| |+.++.+....+++.+++.+.++ ...
T Consensus 22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 101 (437)
T TIGR00792 22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVY 101 (437)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 3344456789999999999999999999999999999998 677 45777888888888888877654 456
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhcc-CccchhHHHHHHHHHHHHHHHHHHHHhhhcc-----ccccchhHHHHHhhHH
Q 012646 86 LLTGRILLGVGIGFGNQAVPLYLSEMA-PTHLRGGLNMMFQLATTLGIFTANMINYGTQ-----KLETWGWRLSLGLAAA 159 (459)
Q Consensus 86 l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~-----~~~~~gwr~~f~~~~~ 159 (459)
+++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+..... ..+..+||+.+++.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~ 181 (437)
T TIGR00792 102 AYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLAL 181 (437)
T ss_pred HHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHH
Confidence 777889999988887778788889987 4689999999998888888766654421111 1134689999999988
Q ss_pred HHHHHHHhh-hccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHH
Q 012646 160 PALMMTVGG-ILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIF 238 (459)
Q Consensus 160 ~~~~~~~~~-~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (459)
++++..+.. +++||+++.. +. + ++++.+.++.+++.++++..+. ..
T Consensus 182 l~~~~~~~~~~~~~e~~~~~----~~-~------------------------~~~~~~~~~~~~~l~~~~~~~~----~~ 228 (437)
T TIGR00792 182 IGVVSLIICFFGTKERYSEI----PK-N------------------------IEKKLSLKQIFKALFKNDQLLI----LC 228 (437)
T ss_pred HHHHHHHHHHcCCEecCCCC----Cc-c------------------------cccCCCHHHHHHHHhCCHHHHH----HH
Confidence 887775544 5567654100 00 0 0000000112333444333222 22
Q ss_pred HHHhhhhcchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHH
Q 012646 239 MPMFQILTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSII 317 (459)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (459)
+..+...........+.+++.+. .+ ++...+.......++.+++.++.+++.||+|+|+.+..+..+..++.+.+...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 307 (437)
T TIGR00792 229 LAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA 307 (437)
T ss_pred HHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 22222222333333344555443 34 44556667777789999999999999999999999888877666665544332
Q ss_pred HhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCC-------ccccchhhHHHHHHHHHHHHHHHHHH
Q 012646 318 LGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFP-------LETRSAGQSITVAVNLFFTFVIAQIF 390 (459)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~ 390 (459)
+ ++.+...+...+.+.+.+.. .+..+++.+|..| ++.+|+..|+.+....++..+++.+.
T Consensus 308 -----------~-~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~ 374 (437)
T TIGR00792 308 -----------G-SNLPLILVLIILAGFGQNFV-TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLV 374 (437)
T ss_pred -----------c-hhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12223333334444444433 2344566667654 55679999999999999999999999
Q ss_pred HHHHhhchh
Q 012646 391 LTLLCSFKF 399 (459)
Q Consensus 391 ~~~~~~~~~ 399 (459)
|.+.+..|+
T Consensus 375 g~ll~~~G~ 383 (437)
T TIGR00792 375 GLILGIIGY 383 (437)
T ss_pred HHHHHHcCC
Confidence 999887654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-28 Score=208.35 Aligned_cols=341 Identities=15% Similarity=0.061 Sum_probs=244.9
Q ss_pred cCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhh
Q 012646 21 ENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFG 100 (459)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 100 (459)
.+.+.+-+++++|++.++..+...+.+++.|.+.||+|+|-.+++|++.+..++++.++.++|+.+++.|.+||+|.+..
T Consensus 97 ~~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~ 176 (464)
T KOG3764|consen 97 EAISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFA 176 (464)
T ss_pred hccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHH
Confidence 34667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhccCcc-chhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccCCChhhHH
Q 012646 101 NQAVPLYLSEMAPTH-LRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLI 179 (459)
Q Consensus 101 ~~~~~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~es~~~l~ 179 (459)
.++..++++|.+|++ +|++++|+.-.+.++|.++||+. ++...+..|.+.+|++.++++++...+.+++-|..+
T Consensus 177 ~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpf--GGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~--- 251 (464)
T KOG3764|consen 177 DTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPF--GGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE--- 251 (464)
T ss_pred HhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCc--ccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc---
Confidence 999999999999865 57999999999999999999999 777778889999999999999998887766533210
Q ss_pred hhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHhHHHH-
Q 012646 180 ERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVL- 258 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 258 (459)
.++.++.+..+++++++++. +.................---++.+
T Consensus 252 ------------------------------~~~~~~~~~~~~~~Ll~dP~----I~~~agai~~~n~~lafLePtlslwm 297 (464)
T KOG3764|consen 252 ------------------------------MDPDSTEQGTPMWSLLMDPY----ILLIAGAITFSNSSLAFLEPTLSLWM 297 (464)
T ss_pred ------------------------------cCccccccCccHHHHHhCch----HhhhhcchhhccchHHHhCcccHHHH
Confidence 00002233556777777766 2222222222222222222223333
Q ss_pred HHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhh--hhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHH
Q 012646 259 FQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALL--ISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILV 336 (459)
Q Consensus 259 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (459)
.+++..+.-+.|..+....+...++..+.|.+.||++..+.+ ..+.+..+.+.....+.. .....+..
T Consensus 298 ~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~----------~~~~L~vp 367 (464)
T KOG3764|consen 298 LETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFAT----------SIAQLWVP 367 (464)
T ss_pred HHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhh----------hHHHHhhh
Confidence 344554444889999999999999999999999999943332 233333332222222221 11223333
Q ss_pred HHHHHHHHHHHhhcccccccceecccCCcc---ccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 012646 337 VVVICLFVLAFGWSWGPLGWTVPSEIFPLE---TRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTI 411 (459)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (459)
.....+.+........|.. .+..|....+ ..|...++......++.+++|.+.|.+.+..|+.+.....++..+
T Consensus 368 ~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~ 444 (464)
T KOG3764|consen 368 NFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNL 444 (464)
T ss_pred hHHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHH
Confidence 3333333333333444442 2333443333 678899999999999999999999999999987554444444333
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=245.16 Aligned_cols=334 Identities=13% Similarity=0.071 Sum_probs=227.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhH---HHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhh
Q 012646 30 QGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIIC---GGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPL 106 (459)
Q Consensus 30 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 106 (459)
...++..+++.+.++++++++|.++||+|||+++.. ..+...+..+.....++++.++++|+++|++.+...|+..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 457888999999999999999999999999997643 22233333333344589999999999999999999999999
Q ss_pred hhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccCCChhhHHhhCCHHH
Q 012646 107 YLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKVE 186 (459)
Q Consensus 107 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~es~~~l~~~~~~~~ 186 (459)
++.|++++++|++++++.+++.++|.++||++ ++......+|++.|+..++..++.+++.+++|+++... ++...+
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 207 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTII--GGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNAA--PDLKID 207 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHH--HHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCCC--CCCeec
Confidence 99999999999999999999999999999999 55555667899999666666665566666677654210 000000
Q ss_pred HHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHhHHHHHHh-cCCC
Q 012646 187 GRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQS-MGFK 265 (459)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~ 265 (459)
. . ...+ ....++...+++..+ ...+..+...........+.|.++++ +|.+
T Consensus 208 ~-------------~-~~~~----------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ 259 (1140)
T PRK06814 208 R-------------N-IIRS----------TITLLKYAKADKRIW----LAILGISWFWLVGAVVLSQLPLLAKETLGGD 259 (1140)
T ss_pred c-------------c-hHHH----------HHHHHHHHhcCchHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHcCCc
Confidence 0 0 0000 011234444444322 22222222222334555677777765 8999
Q ss_pred CchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCc-------cccchhhhHHHH
Q 012646 266 GDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQ-------ELSKSFSILVVV 338 (459)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 338 (459)
+...+++....+++.++|.++.+++.++..+++.+..+.++..++.+.+.+.......... .....+.+...+
T Consensus 260 ~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1140)
T PRK06814 260 ENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILI 339 (1140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHH
Confidence 9999999999999999999999999988877766655555544444333321000000000 000022333344
Q ss_pred HHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012646 339 VICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCS 396 (459)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 396 (459)
..++++.+.+....+. .+++.+..|++.+|+++|+.++...++..+++.+.+.+.+.
T Consensus 340 ~~~~~g~~~~~~~~~~-~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~ 396 (1140)
T PRK06814 340 DLFGLAAAGGLYIVPL-FAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQAL 396 (1140)
T ss_pred HHHHHHHHHHHhHHHH-HHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555444444 67788999999999999999999999999999999988753
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-26 Score=213.96 Aligned_cols=355 Identities=12% Similarity=0.067 Sum_probs=227.3
Q ss_pred hhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHH---HH-----hhH
Q 012646 12 VYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNA---AA-----ANL 83 (459)
Q Consensus 12 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~---~~-----~~~ 83 (459)
.+.+..+...++++|.++.+.|++.+.+.++..+++++.|+++||+|||+.++.+.....++..... +. +..
T Consensus 20 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (396)
T TIGR00882 20 AYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNIL 99 (396)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3444455555667899999999999999999999999999999999999999887776665443321 11 223
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHH
Q 012646 84 AMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALM 163 (459)
Q Consensus 84 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~ 163 (459)
..+++.|++.|++.+...+....+..|..+ ++++..+......++|.+++|.++ +... ..+||..|++.++.+++
T Consensus 100 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~--g~l~-~~~~~~~f~~~~~~~~~ 174 (396)
T TIGR00882 100 VGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIA--GILF-SIDPQIVFWLGSGFALI 174 (396)
T ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHH--hhhh-ccCchHHHHHHHHHHHH
Confidence 445667888999888888888777777532 345566777778889999999884 3332 34899999999888887
Q ss_pred HHHhhhc-cCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHh
Q 012646 164 MTVGGIL-LPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMF 242 (459)
Q Consensus 164 ~~~~~~~-~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (459)
..++.+. .||+|+.. +.++. . +.+.+++...+.++.++++...... +..+
T Consensus 175 ~~~~~~~~~~~~~~~~----~~~~~-------~--------------~~~~~~~~~~~~~~~l~~~~~~~~~----l~~~ 225 (396)
T TIGR00882 175 LMLLLMFAKPKAPSSA----TVANA-------L--------------GANASAFSLKLALELFRQRKFWMFV----LYVV 225 (396)
T ss_pred HHHHHHHhCCCCchhh----hhhcc-------c--------------ccccCCCCHHHHHHHHcCCcHHHHH----HHHH
Confidence 7655544 34443110 00000 0 0000011112345555555432221 1122
Q ss_pred hhhcchHHHHHhHHHHHHhc----CCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHH
Q 012646 243 QILTGINSILFYAPVLFQSM----GFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIIL 318 (459)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (459)
.....+.....+.+.+.+++ +.+....+.......+...++.+..+++.||+++|+.+..+..+..+........
T Consensus 226 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~- 304 (396)
T TIGR00882 226 GVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA- 304 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc-
Confidence 22222333333455555442 4455567888888888899999999999999999999888777666655443321
Q ss_pred hhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHH-HHHHHHHHHHHHHHHHHHHHhhc
Q 012646 319 GLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSI-TVAVNLFFTFVIAQIFLTLLCSF 397 (459)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~~~~~~~~~ 397 (459)
.+.+.......+.+.+...... ....+..+..|++.+++..+. .+....+|+.+++.+.|++.|..
T Consensus 305 ------------~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~ 371 (396)
T TIGR00882 305 ------------TTALEVVILKMLHAFEVPFLLV-GCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI 371 (396)
T ss_pred ------------CChHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence 1233333333333333322211 223455677788888887776 67889999999999999999988
Q ss_pred hhHHHHHHHHHHHHHHH
Q 012646 398 KFGIFLFFAGWVTIMTI 414 (459)
Q Consensus 398 ~~~~~~~~~~~~~~~~~ 414 (459)
|+...+...+++.++..
T Consensus 372 G~~~~f~~~~~~~~i~~ 388 (396)
T TIGR00882 372 GFQGAYLVLGCIVLLFT 388 (396)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 87666665555544433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-26 Score=215.81 Aligned_cols=348 Identities=16% Similarity=0.127 Sum_probs=251.4
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHhhhhhhhh
Q 012646 26 KYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAA-----ANLAMLLTGRILLGVGIGFG 100 (459)
Q Consensus 26 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~ 100 (459)
.-|+...+++..+..+...+.+++.|.++||++|||+++.+-++..+..+..++. .+.+.+++.-++.|++.+..
T Consensus 41 t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~ 120 (524)
T PF05977_consen 41 TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFF 120 (524)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHH
Confidence 4588899999999999999999999999999999999999998887665554432 46788999999999999999
Q ss_pred hhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccCCChhhHHh
Q 012646 101 NQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIE 180 (459)
Q Consensus 101 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~es~~~l~~ 180 (459)
.|+..+++.|..|+++...+.++.+...++..++||.+ ++......|-.+.|.+.++..++.+......++.++ .
T Consensus 121 ~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPal--gG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~---~ 195 (524)
T PF05977_consen 121 NPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPAL--GGILVAFFGAAAAFLINALSFLISILALLRWKPPPP---P 195 (524)
T ss_pred HHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc---c
Confidence 99999999999999999999999999999999999999 555555567788898887766555444443432210 0
Q ss_pred hCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHhHHHHHH
Q 012646 181 RGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQ 260 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (459)
++..+| ...+..+..++-..+++..+..+.. .+............+|.+.+
T Consensus 196 ~~~~~e-------------------------~~~~~l~~G~ryv~~~~~l~~~l~~----~~~~~l~~~a~~aLlPl~a~ 246 (524)
T PF05977_consen 196 SSLPRE-------------------------RFFSALREGLRYVRSSPPLRSVLLR----SFLFNLFASAVWALLPLFAR 246 (524)
T ss_pred cccchh-------------------------hhhhhHHHHHHHHhcchHHHHHHHH----HHHHHHhhhHHHHhhhHHHH
Confidence 000000 0000111222222223322222221 11112222334455787776
Q ss_pred h-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHH
Q 012646 261 S-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVV 339 (459)
Q Consensus 261 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (459)
+ +|.++...|++....+++.++|.++.+++.+|+++++++..+.+..+++.+.+.+. .+.+.....
T Consensus 247 ~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~-------------~~~~~~~~~ 313 (524)
T PF05977_consen 247 DVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS-------------PSFWLALIA 313 (524)
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc-------------hHHHHHHHH
Confidence 5 88899999999999999999999999999999999888887777777666555543 234444445
Q ss_pred HHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhc
Q 012646 340 ICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFF 419 (459)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (459)
.++.+.+........ .+...+..|++.||++++++++....+..++..+.|.+.+..+....+..++++.+++.++...
T Consensus 314 l~l~G~~~~~~~~~~-~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~ 392 (524)
T PF05977_consen 314 LFLAGAAWIIANSSL-NTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALR 392 (524)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555444333 5667899999999999999999999999999999999999998776666666655555555444
Q ss_pred cC
Q 012646 420 LP 421 (459)
Q Consensus 420 ~~ 421 (459)
.+
T Consensus 393 ~~ 394 (524)
T PF05977_consen 393 FP 394 (524)
T ss_pred hc
Confidence 33
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.2e-28 Score=226.55 Aligned_cols=379 Identities=18% Similarity=0.214 Sum_probs=272.9
Q ss_pred cccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHH-HHHhhhhh
Q 012646 19 AHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTG-RILLGVGI 97 (459)
Q Consensus 19 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-r~l~G~~~ 97 (459)
+..+++++.+..+.+|+.++....+.+.+++.+.+.||+|.|++.+.|.++..++.++.++++++|++++. -++.|+|.
T Consensus 70 ~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~ 149 (509)
T KOG2504|consen 70 EELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGL 149 (509)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccc
Confidence 44567789999999999999999999999999999999999999999999999999999999999988875 58999999
Q ss_pred hhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccCC-Chh
Q 012646 98 GFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPE-TPN 176 (459)
Q Consensus 98 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e-s~~ 176 (459)
|..+......+..++ +++|+.+.|+...+.++|.++-|.+ .-...+..|||+.+++.+.+.+-.++....+++ +++
T Consensus 150 ~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l--~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~ 226 (509)
T KOG2504|consen 150 GLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPL--LKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPP 226 (509)
T ss_pred hhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHH--HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 999999999999888 5689999999999999999999988 566677789999999988888666655544433 221
Q ss_pred hHHhhCCHHHHHHHHH------------HHhCCchhhH-----HHHHHHHHHHhhc--cCCcch----HHHhccCchhHH
Q 012646 177 SLIERGKKVEGRRVLE------------KIRGTKEVNA-----EYQDMVDASELAN--SIKHPF----RNILERRNRPQL 233 (459)
Q Consensus 177 ~l~~~~~~~~~~~~~~------------~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~ 233 (459)
.... .++..+... .....+.... ...+..+..++.. ..+... .+++++ +.
T Consensus 227 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~----~~ 299 (509)
T KOG2504|consen 227 KKPN---EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKD----PK 299 (509)
T ss_pred CCch---hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcC----ch
Confidence 1000 000000000 0000000000 0000000000000 001111 234444 34
Q ss_pred HHHHHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCch--hhhhhhHHHHHHH
Q 012646 234 VMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRA--LLISGGIQMITCQ 311 (459)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~--~~~~~~~~~~~~~ 311 (459)
++.+.+...+...++.....++|.+.+..|++..++.....+.++..++++++.|++.|+...++ ...++.+..+++.
T Consensus 300 fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~ 379 (509)
T KOG2504|consen 300 FLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR 379 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH
Confidence 66666666666777888888999999999999999999999999999999999999999988443 3344444444443
Q ss_pred HHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 012646 312 VIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFL 391 (459)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~ 391 (459)
..+... ...+.......+++...+ .+..+...++.|..+.++-..+.|+...+..++..++|++.|
T Consensus 380 ~~~p~~-------------~~~~~l~~~~~~fG~~~g-~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag 445 (509)
T KOG2504|consen 380 LFLPFA-------------TTYVGLIVFSILFGFCVG-SFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAG 445 (509)
T ss_pred HHHHHh-------------ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccce
Confidence 333222 222333334444444443 344444456789999999999999999999999999999999
Q ss_pred HHHhhch-hHHHHHHHHHHHHHHHHHHhccC
Q 012646 392 TLLCSFK-FGIFLFFAGWVTIMTIFVYFFLP 421 (459)
Q Consensus 392 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 421 (459)
.+.|..+ |...+.+.+++.+.+.++++..+
T Consensus 446 ~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 446 LLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred eeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 9999887 88888888888888887777776
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=212.47 Aligned_cols=324 Identities=13% Similarity=0.094 Sum_probs=218.1
Q ss_pred ccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhc-----Ccchh-hhHHHHHHHHHHHHHHHH---hhHHHHHHHH
Q 012646 20 HENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDY-----GRRAS-IICGGISFLLGAALNAAA---ANLAMLLTGR 90 (459)
Q Consensus 20 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grk~~-l~~~~~~~~~~~~~~~~~---~~~~~l~~~r 90 (459)
...+|+|+|.+++|+..+. .+...+ .+++|+++||+ ||||. ++.+.++.+++....++. .+.+.+....
T Consensus 13 ~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~ 90 (356)
T TIGR00901 13 YWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLA 90 (356)
T ss_pred HHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHH
Confidence 3355679999999999755 455554 99999999998 89886 567788888887777776 5667778888
Q ss_pred HHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccch--------hHHHHHhhHHHHH
Q 012646 91 ILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWG--------WRLSLGLAAAPAL 162 (459)
Q Consensus 91 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~g--------wr~~f~~~~~~~~ 162 (459)
++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.++ .......+ ||..|++.++..+
T Consensus 91 ~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~--~~l~~~~g~~~~~~~~wr~~f~i~ai~~l 168 (356)
T TIGR00901 91 FLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLA--LVLASPEFANTGLITLWGYIFFWTALLIL 168 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHH--HHHhhhcccccccccccHHHHHHHHHHHH
Confidence 8899998989999999999999999999999999999999999999884 34444445 9999999998877
Q ss_pred HHHHhhhc-cCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHH
Q 012646 163 MMTVGGIL-LPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPM 241 (459)
Q Consensus 163 ~~~~~~~~-~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (459)
+..+..++ .||+++. ++.++ + + .+ +.+.++++.++++..++....... .
T Consensus 169 ~~~~~~~~~~~e~~~~----~~~~~----------------~--~-~~------~~~~~~~~~~~~~~~~~~~~~~~~-~ 218 (356)
T TIGR00901 169 PGLLVTLFLAKEPQED----ASVPK----------------P--L-TQ------AVLKPIREFFQRKNMIQALLLLLL-I 218 (356)
T ss_pred HHHHHHHHhccCCCcc----cccch----------------h--H-HH------HHHHHHHHHHHhcCchHHHHHHHH-H
Confidence 76655554 5664310 00000 0 0 00 001234445544432233333322 2
Q ss_pred hhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHH-HHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhh
Q 012646 242 FQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTG-AVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGL 320 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
+...........+.|.+.++.|++..+.+......+ +..+++.++++++.||+|+|+.+..+.++..+...........
T Consensus 219 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~ 298 (356)
T TIGR00901 219 VLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASN 298 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 223334455666777777778999999888777665 5778999999999999999988887777666655444332100
Q ss_pred hcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHH
Q 012646 321 KFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNL 380 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 380 (459)
... . +.+....+.......+...+.+.... ...++..|.+|+++||+.+|+.+...+
T Consensus 299 ~~~-~-~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 299 GHH-D-GITFPHLLMLFLTITLEAVTGGLGTV-AFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred Ccc-c-ccccchHHHHHHHHHHHHHHhHHHHH-HHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 000 0 00001123333333333444443433 346888999999999999999887654
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=209.48 Aligned_cols=364 Identities=12% Similarity=0.055 Sum_probs=235.1
Q ss_pred hhhhhhhhhhhhhcccccCCcccCCchh-hHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhh
Q 012646 4 EFQKFFHDVYLKKKHAHENNYCKYDNQG-LAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAAN 82 (459)
Q Consensus 4 f~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~ 82 (459)
|+.++ |...+...+.+.+|+|+|+.+ .|.+.++++.+|+++.++.|.++||+|.|+++..+.+.+++.+++.+++++
T Consensus 37 F~~e~--R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S 114 (511)
T TIGR00806 37 FMAQF--RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS 114 (511)
T ss_pred HHHHh--hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666 666677777788899999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHh---hHH
Q 012646 83 LAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGL---AAA 159 (459)
Q Consensus 83 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~---~~~ 159 (459)
+..+.+.|++.|++.|... +...++..|+|+++|+++.++...+..+|.+++++++.. ...+|||+.+.+ ...
T Consensus 115 l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql---l~s~gWr~y~~Ln~Isl~ 190 (511)
T TIGR00806 115 VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL---LVTLGWISYSTLNIISLV 190 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCchhHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999999999999999544 345689876544 333
Q ss_pred HHHHHHHhhhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhH-HHHHHHHH--HHhhccCCcchHHHhccCchhHHHHH
Q 012646 160 PALMMTVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNA-EYQDMVDA--SELANSIKHPFRNILERRNRPQLVMA 236 (459)
Q Consensus 160 ~~~~~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (459)
...+.+++.+++|..++.+.-+++.+.......+.....+.+. +..+..+. ...-+.....+++..+++. ++.
T Consensus 191 s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~----vl~ 266 (511)
T TIGR00806 191 FMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQ----LLL 266 (511)
T ss_pred HHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcc----hhh
Confidence 3344455667888666654433221110000000000000000 00000000 0000000111122222222 333
Q ss_pred HHHHHhhhhcchHHHHHhHHHHHHhcCCC-CchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHH
Q 012646 237 IFMPMFQILTGINSILFYAPVLFQSMGFK-GDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVS 315 (459)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 315 (459)
..+......+++.-...|...+.++..-+ +.--|..-++..+.+.+..+..|++-.++.+.-.+.++.+...-+.+++.
T Consensus 267 WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~ 346 (511)
T TIGR00806 267 WSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFW 346 (511)
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhh
Confidence 33333444445566667776666653222 22446666677777888888889885555332233333332222222222
Q ss_pred HHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHH
Q 012646 316 IILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQI 389 (459)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 389 (459)
.. ..++.|...+..+++...+..... +....+++....+.-|..+|++++...+-..+-..+
T Consensus 347 m~-----------~t~~Iw~~Y~~yvlf~~~y~flit-ia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~i 408 (511)
T TIGR00806 347 MS-----------QSHDIWVLYVTYVLFRGIYQFLVP-IATFQIASSLSKELCALVFGINTFVATALKTIITAV 408 (511)
T ss_pred hh-----------cccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEE
Confidence 11 124566666667777766665443 334555566667777999999988887666555543
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=225.29 Aligned_cols=380 Identities=12% Similarity=0.093 Sum_probs=254.3
Q ss_pred hhhhhhhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHh---
Q 012646 5 FQKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAA--- 81 (459)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~--- 81 (459)
+.+...+.+.....+.++++++++..+.|++.+.+.++++++.++.|+++||+|||+++.+++++++++++++++.+
T Consensus 43 ~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~ 122 (633)
T TIGR00805 43 LQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLS 122 (633)
T ss_pred HHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhc
Confidence 34445677888888899999999999999999999999999999999999999999999999999999999988764
Q ss_pred ------------------------------------------------hHHHHHHHHHHhhhhhhhhhhhhhhhhhhccC
Q 012646 82 ------------------------------------------------NLAMLLTGRILLGVGIGFGNQAVPLYLSEMAP 113 (459)
Q Consensus 82 ------------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 113 (459)
.+..++++|+++|+|.+..++...+++.|++|
T Consensus 123 ~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~ 202 (633)
T TIGR00805 123 GRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAK 202 (633)
T ss_pred CCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCC
Confidence 24567889999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhccccc-------------------c-chhHHHHHhhHHHHHHHHHhhhccCC
Q 012646 114 THLRGGLNMMFQLATTLGIFTANMINYGTQKLE-------------------T-WGWRLSLGLAAAPALMMTVGGILLPE 173 (459)
Q Consensus 114 ~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~-------------------~-~gwr~~f~~~~~~~~~~~~~~~~~~e 173 (459)
+++|+++++++..+..+|.++|++++....... + .+||..|++.+++.++..+.++++|+
T Consensus 203 ~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~ 282 (633)
T TIGR00805 203 SKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPK 282 (633)
T ss_pred ccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 999999999999999999999998854332110 0 13888899888888777665666665
Q ss_pred ChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHH
Q 012646 174 TPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILF 253 (459)
Q Consensus 174 s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (459)
+.+....+.+.+..++ +......+.. .. +.....++.....+++++++. ++...+..+........+..
T Consensus 283 ~lp~~~~~~~~~~~~~--~~~~~~~~~~--~~---~~~~~~~~~~~~~~~Ll~n~~----f~~~~l~~~~~~~~~~~~~~ 351 (633)
T TIGR00805 283 ALPKEGKRVNVDVHET--EKLEKSEDKS--RK---KNSDITKDFPKIIKRLLCNPI----YMLVILAQVIDSLAFNGYIT 351 (633)
T ss_pred ccCCcccccchhhhhh--hccccccccc--ch---hhhhhHHHHHHHHHHHHcCcH----HHHHHHHHHHHHHHHHHHHH
Confidence 4311000000000000 0000000000 00 000000001123344554443 44455555555556677888
Q ss_pred hHHHHHHh-cCCCCchhHHHHHHHHH-HHHHHhHHHHHHHhhcCC--chhhhhhhHHHHHHHHHHHHHHhh---------
Q 012646 254 YAPVLFQS-MGFKGDASLYSSAMTGA-VLASSTLISIATVDKLGR--RALLISGGIQMITCQVIVSIILGL--------- 320 (459)
Q Consensus 254 ~~~~~~~~-~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--------- 320 (459)
+.|.++++ +|+++.+++.+.....+ +.+++.+++|+++||++. |+.+..+.+...++.+........
T Consensus 352 ~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~ag 431 (633)
T TIGR00805 352 FLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLLCSPLFLIGCESAPVAG 431 (633)
T ss_pred HHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHHHHHHHeecCCCCccce
Confidence 89988875 99999999988877666 568899999999999984 455555555555544332210000
Q ss_pred ----------------hcC------CC-------------------c-----c---------------------------
Q 012646 321 ----------------KFG------PN-------------------Q-----E--------------------------- 327 (459)
Q Consensus 321 ----------------~~~------~~-------------------~-----~--------------------------- 327 (459)
..+ .. . .
T Consensus 432 v~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~~CsCi~~~~~~~a~~g~C~ 511 (633)
T TIGR00805 432 VNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYTNCSCVQTPGNSSAKKGLCN 511 (633)
T ss_pred eeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcceecccccccCCCCCCCcCCCCC
Confidence 000 00 0 0
Q ss_pred ccchh-hhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHH-HHHHHHHHHHHHHHhh
Q 012646 328 LSKSF-SILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNL-FFTFVIAQIFLTLLCS 396 (459)
Q Consensus 328 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~~~~~~~~~ 396 (459)
.+-.. ....++...+..+.......|. ...+-..+|+++|+.+.|+...+.+ +|.+.+|.++|.+.|.
T Consensus 512 ~~C~~~~~~f~~~~~~~~~~~~~~~~p~-~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD~ 581 (633)
T TIGR00805 512 PPCATSLLYFLILFIPLSFIAFITAVPL-YMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLIDV 581 (633)
T ss_pred cccchhHHHHHHHHHHHHHHHHhccCch-heEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhhc
Confidence 00001 1122222333333333444555 3455688999999999999998765 5779999999999884
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-25 Score=193.44 Aligned_cols=341 Identities=13% Similarity=0.149 Sum_probs=258.9
Q ss_pred hhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHH---HHhhHHHHH
Q 012646 11 DVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNA---AAANLAMLL 87 (459)
Q Consensus 11 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~---~~~~~~~l~ 87 (459)
+...+.+.|+.++.++++..+.+++...++.|+.+.+++.|.+.+|+|+|+.++.|+.++++++.+.. ...+|..++
T Consensus 29 ~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL 108 (422)
T COG0738 29 TCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFL 108 (422)
T ss_pred hhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 44556677778888999999999999999999999999999999999999999999999999999984 567889999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhcccc-----------------ccchh
Q 012646 88 TGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKL-----------------ETWGW 150 (459)
Q Consensus 88 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~-----------------~~~gw 150 (459)
.+-++.|.|.+...+.+..+++...++++..+.+++.+...++|.+++|+++...... ....|
T Consensus 109 ~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v 188 (422)
T COG0738 109 VALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSV 188 (422)
T ss_pred HHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999998889999999999999999999996544431 01248
Q ss_pred HHHHHhhHHHHHHHHHhhhc--cCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccC
Q 012646 151 RLSLGLAAAPALMMTVGGIL--LPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERR 228 (459)
Q Consensus 151 r~~f~~~~~~~~~~~~~~~~--~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (459)
|++|...+...++..+.... .|+.+.- +.+..+..+....+.++++
T Consensus 189 ~~pYl~~~~~lvll~v~~~~~k~p~~~~~--------------------------------~~~~~~~~~~~~~~l~~~~ 236 (422)
T COG0738 189 QFPYLILAGLLVLLAVLILLSKLPDLQVA--------------------------------APSLGASGSAGLSSLFQNK 236 (422)
T ss_pred hhHHHHHHHHHHHHHHHHHhccCCcCCcc--------------------------------cccccccccchHHHHHhCh
Confidence 88888877777666655544 3433200 0000011111345666665
Q ss_pred chhHHHHHHHHHHhhhhcchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHH
Q 012646 229 NRPQLVMAIFMPMFQILTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQM 307 (459)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 307 (459)
. +....+..+++.........|.+.++.+ .|.+..++....+....+.++|++++.++..|+...|.+.....+.
T Consensus 237 ~----~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ 312 (422)
T COG0738 237 H----LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIA 312 (422)
T ss_pred H----HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 5 4445555566666667788888888877 8999999999999999999999999999999999888887766555
Q ss_pred HHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHH
Q 012646 308 ITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIA 387 (459)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 387 (459)
.+.++...+.. ....+....+.+.+.+..++.+ ++...+..| ++ ....|.......+|+++.|
T Consensus 313 ill~~~~~l~~--------------g~v~~~~l~~ig~F~simfPTI-fslal~~l~-~~-ts~~s~~l~maivGGAiiP 375 (422)
T COG0738 313 ILLLLAVALIG--------------GVVALYALFLIGLFNSIMFPTI-FSLALKNLG-EH-TSVGSGLLVMAIVGGAIIP 375 (422)
T ss_pred HHHHHHHHHhc--------------ChHHHHHHHHHHHHhHHHHHHH-HHHHHhccC-cc-ccccceeeeeheecchHHH
Confidence 55555444431 2344555556666666555444 677778887 33 3344455666778999999
Q ss_pred HHHHHHHhhchhHHHHH
Q 012646 388 QIFLTLLCSFKFGIFLF 404 (459)
Q Consensus 388 ~~~~~~~~~~~~~~~~~ 404 (459)
++.|++.|+.+......
T Consensus 376 ~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 376 PLQGVIADMFGIQLTFL 392 (422)
T ss_pred HHHHHHHHhhhhHHHHH
Confidence 99999999998655444
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-24 Score=202.97 Aligned_cols=369 Identities=18% Similarity=0.156 Sum_probs=228.2
Q ss_pred hhhhhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHH
Q 012646 7 KFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAML 86 (459)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l 86 (459)
.|+.-.......+.+..|+|-+ ....|+.+...++.+++.++.|+++|.||||++++.+.++..+|+++++.++|...+
T Consensus 56 ~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~ 134 (599)
T PF06609_consen 56 AYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTF 134 (599)
T ss_pred HHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHH
Confidence 3433333344455667777754 668899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHH
Q 012646 87 LTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTV 166 (459)
Q Consensus 87 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~ 166 (459)
+++..+.|+|.|... .....++|..|.|.|....++...........++.++.. ...+.+|||.|++.++...+.++
T Consensus 135 iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~--~~~~~~WRw~~~~~~i~~~i~~v 211 (599)
T PF06609_consen 135 IAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQL--FAAHSGWRWIFYIFIIWSGIALV 211 (599)
T ss_pred HHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHH--hccCCCcchHHHHHHHHHHHHHH
Confidence 999999999977665 456668999999999887777766555555566666322 23345899999999888777655
Q ss_pred hhhccCCChhhHHhhCC---HHHHHHHHHHHh------------------CC---chhhHHHHH-H-------H--HHHH
Q 012646 167 GGILLPETPNSLIERGK---KVEGRRVLEKIR------------------GT---KEVNAEYQD-M-------V--DASE 212 (459)
Q Consensus 167 ~~~~~~es~~~l~~~~~---~~~~~~~~~~~~------------------~~---~~~~~~~~~-~-------~--~~~~ 212 (459)
+.+++..+|++...+++ ..+..+.++.+. +. +..+...-. . . ---+
T Consensus 212 l~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE 291 (599)
T PF06609_consen 212 LIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWE 291 (599)
T ss_pred HHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhh
Confidence 44332222322222211 122222222221 00 000000000 0 0 0000
Q ss_pred hhccCCcc--hHHHhccCchhHHHHHHHHHHhhhhcchHHHHHhHHHHHH-hcCCCCc---hhHHHHHHHHHHHHHHhHH
Q 012646 213 LANSIKHP--FRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQ-SMGFKGD---ASLYSSAMTGAVLASSTLI 286 (459)
Q Consensus 213 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~~~~~~~~~ 286 (459)
.....+++ ..+++++++ .+...++..+.....+.....+.|.... .++-++. ..++.....+++...|.++
T Consensus 292 ~~~~~~~Pl~P~~Lf~~~r---~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i 368 (599)
T PF06609_consen 292 WFGAPKDPLFPHRLFKDRR---GFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVI 368 (599)
T ss_pred hhccCCCCcCCHHHhccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHH
Confidence 01111222 234554422 2233323333333333444444444433 3555543 5677888888999999999
Q ss_pred HHHHHhhcCCchh-hhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCc
Q 012646 287 SIATVDKLGRRAL-LISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPL 365 (459)
Q Consensus 287 ~g~l~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 365 (459)
.+.+..+++|-|. ++.+..++.+++.++.... .++....+....+.+.+.+....+. .....-..|+
T Consensus 369 ~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~-----------~~n~~~~i~~~~l~g~giG~~~~~~-~~~~ql~~p~ 436 (599)
T PF06609_consen 369 LGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR-----------PDNKNAAIAFLVLAGFGIGGILVPA-IVIAQLIVPD 436 (599)
T ss_pred HHHHHHHccchhHHHHHHHHHHHHHHHHHHHcc-----------CCCcchHHHHHHHHHHhHHHHHHHH-HHeeEeeeCc
Confidence 9999998876544 4455555554444433321 1111222333344444444433333 3555667899
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 012646 366 ETRSAGQSITVAVNLFFTFVIAQIFLTLL 394 (459)
Q Consensus 366 ~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 394 (459)
+.-+++.|+...++.+|+.++..++..+.
T Consensus 437 ~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 437 EDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999998886554
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-26 Score=195.78 Aligned_cols=338 Identities=15% Similarity=0.079 Sum_probs=212.1
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhh
Q 012646 26 KYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVP 105 (459)
Q Consensus 26 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 105 (459)
+.+....|.+.++|.++..+.++.+|.++||+|||++++.+++..++...+.+.+.|+..+++.|++.|+..|. ..+..
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v~r 142 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSVIR 142 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHHHH
Confidence 45677789999999999999999999999999999999999999999999999999997788889999999775 46789
Q ss_pred hhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccc-cchhHHHH----HhhHHHHHH-HHHhhhccCCChhhHH
Q 012646 106 LYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLE-TWGWRLSL----GLAAAPALM-MTVGGILLPETPNSLI 179 (459)
Q Consensus 106 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~-~~gwr~~f----~~~~~~~~~-~~~~~~~~~es~~~l~ 179 (459)
++++|.+++++|++.++.....+++|.++||.++....... ..| +.+| ++..+.... .....+++||+-+
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~p~alP~~~v~i~a~~~v~~~~~~lpETL~--- 218 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG-SYPFALPCLLVFILAAGDVTFFPWFLPETLP--- 218 (451)
T ss_pred HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc-cCchHHHHHHHHHHHHHHHHHHHHhCCcccc---
Confidence 99999999999999999999999999999999954443311 111 1222 222222222 2334577899832
Q ss_pred hhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCC-cchHHHhccCchhH---HHHHHHHHHhhhhcchHHHHHhH
Q 012646 180 ERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIK-HPFRNILERRNRPQ---LVMAIFMPMFQILTGINSILFYA 255 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 255 (459)
.+++.++..+.. +..+...+..+.. .......+++.... ..-.+.+..+.+...+....++.
T Consensus 219 ~rk~~~~~~~~~--------------~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~ 284 (451)
T KOG2615|consen 219 LRKRNDEHSTLQ--------------EAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTV 284 (451)
T ss_pred chhhcccccchh--------------hhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 111111111000 0000000000000 00001111111111 11122222333333333344444
Q ss_pred HHHH-HhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcC--CchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchh
Q 012646 256 PVLF-QSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLG--RRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSF 332 (459)
Q Consensus 256 ~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (459)
+.+. ..+|+++.+.|.+....++.+.+.+.......+|.+ .+-.+.....++.-..+++... ..
T Consensus 285 ~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~-------------~~ 351 (451)
T KOG2615|consen 285 LFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA-------------RT 351 (451)
T ss_pred HHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc-------------cc
Confidence 4442 348999999999988888888777777666666665 3333333322222222222211 11
Q ss_pred hhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012646 333 SILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCS 396 (459)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 396 (459)
.........+..+........+ ..++....|++.||+..|+....+.++-+++|.+.|.+..+
T Consensus 352 ~~~l~~~s~l~sf~~A~~vt~L-t~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 352 PVVLYLGSTLKSFSTASVVTCL-TSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred chhhhHHHHHHHHHHHHhhHHH-HHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence 2222333333333333333333 57778999999999999999999999999999999877654
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=206.98 Aligned_cols=382 Identities=10% Similarity=0.046 Sum_probs=234.5
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHhHhhhhhh-cCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhh
Q 012646 25 CKYDNQGLAAFTSSLYLAGLVASFVASPVTRD-YGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQA 103 (459)
Q Consensus 25 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 103 (459)
+|++..+.+++.+.+.++..++++++|+++|| +|||++++.+.++.+++.++.+++++++.+++.|++.|++.|...+.
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~ 122 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKAN 122 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCC
Confidence 89999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCccc---hhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccC----CChh
Q 012646 104 VPLYLSEMAPTHL---RGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLP----ETPN 176 (459)
Q Consensus 104 ~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~----es~~ 176 (459)
..++++|++|+++ |+++.+++..+.++|.++||.+ .....+..|||+.|.+.++..++..+..++.+ +.|+
T Consensus 123 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l--~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~ 200 (475)
T TIGR00924 123 PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLL--AGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGS 200 (475)
T ss_pred HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHH--HHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCC
Confidence 9999999998754 8889999999999999999999 55555667899999998765555444333332 2221
Q ss_pred hHHhhCCHHHHHHHHH---------------HHhCCchhhHHHHHH------HHHHHhhccCCcchHHHhccCchhHHHH
Q 012646 177 SLIERGKKVEGRRVLE---------------KIRGTKEVNAEYQDM------VDASELANSIKHPFRNILERRNRPQLVM 235 (459)
Q Consensus 177 ~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (459)
.. ++.+.++.+.... .....+......... ........+++ ..+..+++ ... .+
T Consensus 201 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~-~l 275 (475)
T TIGR00924 201 VP-DPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPR--LDAVARNK-MYA-YI 275 (475)
T ss_pred CC-CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhcc--CCHHHHhH-HHH-HH
Confidence 00 0000000000000 000000000000000 00000000000 00111111 111 22
Q ss_pred HHHHHHhhhhcchHHHHHhHHHHHHh-cCCCCc----hhHHHHHHHHHHHHHHhHHHHHHHhhcCC-----chhh--hhh
Q 012646 236 AIFMPMFQILTGINSILFYAPVLFQS-MGFKGD----ASLYSSAMTGAVLASSTLISIATVDKLGR-----RALL--ISG 303 (459)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~----~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-----~~~~--~~~ 303 (459)
.+.+........+.-.....+.+.++ .+.+.. ..+++.....+..++..++..++..|.+| +... .++
T Consensus 276 ~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G 355 (475)
T TIGR00924 276 VLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLG 355 (475)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Confidence 22222222233333333334444333 332211 25677888888888887765554444433 2333 556
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHH
Q 012646 304 GIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFT 383 (459)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 383 (459)
.++.+++...+.+.... .. .....+.++.+....+...+-. ...|....++.+..|++.||+.+|+......+|.
T Consensus 356 ~~l~~~~~~~~~~~~~~--~~--~~~~~s~~~~i~~~~~~~~ge~-~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~ 430 (475)
T TIGR00924 356 MLFCGASFLTFAASIWF--AD--AGGLTSPWFMVLIYLFQTLGEL-MISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGS 430 (475)
T ss_pred HHHHHHHHHHHHHHHhh--cC--CCCccCHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 66666666555543211 11 0112334445555555555544 4456667888999999999999999999999999
Q ss_pred HHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHHHh
Q 012646 384 FVIAQIFLTLLCSFKFGIFLFF-AGWVTIMTIFVYF 418 (459)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 418 (459)
.+++.+.....+..++...+.. ..++++.+++..+
T Consensus 431 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (475)
T TIGR00924 431 LLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMAL 466 (475)
T ss_pred HHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 9999988877666554433333 3333334444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=206.62 Aligned_cols=363 Identities=10% Similarity=0.032 Sum_probs=221.7
Q ss_pred ccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhh-cCcchhhhHHHHHHHHHHHHHHHHhhHHH-HHHHHHHhhh
Q 012646 18 HAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRD-YGRRASIICGGISFLLGAALNAAAANLAM-LLTGRILLGV 95 (459)
Q Consensus 18 ~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~ 95 (459)
....++++|++..+.+++.+.+.....+..+++|+++|| +||||+++.+.+++.++++.++++++... ++++|+++|+
T Consensus 38 ~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~i 117 (489)
T PRK10207 38 AVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAV 117 (489)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHh
Confidence 334456789999999999999999999999999999999 99999999999999999999999876444 5589999999
Q ss_pred hhhhhhhhhhhhhhhccCcc--chhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccCC
Q 012646 96 GIGFGNQAVPLYLSEMAPTH--LRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPE 173 (459)
Q Consensus 96 ~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e 173 (459)
|.|...+...+++.|.+|++ +|+++++++..+.++|..+||.+ +....++.|||+.|++.++..++.++.....++
T Consensus 118 g~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l--~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~ 195 (489)
T PRK10207 118 GNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSL--APVIADKFGYSVTYNLCGAGLIIALLVYFACRG 195 (489)
T ss_pred ccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHH--HHHHHHhhChHHHHHHHHHHHHHHHHHHHHcch
Confidence 99999999999999999877 45789999999999999999998 555566779999999865533333333333332
Q ss_pred ChhhHH--hhCCHHHHHHHH-------------HHHhCCchhhHHHHHH---HH---HHHhhccCCcchHHHhccCchhH
Q 012646 174 TPNSLI--ERGKKVEGRRVL-------------EKIRGTKEVNAEYQDM---VD---ASELANSIKHPFRNILERRNRPQ 232 (459)
Q Consensus 174 s~~~l~--~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~ 232 (459)
..+... .+++..+..... ................ .. -...+.+ .+ +.+|++....
T Consensus 196 ~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~--~~--~~~r~r~~~~ 271 (489)
T PRK10207 196 MVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFK--LD--KTGRNKMFVA 271 (489)
T ss_pred hhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc--CC--HHHHHHHHHH
Confidence 211000 001111111100 0000000000000000 00 0000000 00 2222221111
Q ss_pred HHHHHHHHHhhhhcchHHHHHhHHHHHHh-c-----CCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchh-------
Q 012646 233 LVMAIFMPMFQILTGINSILFYAPVLFQS-M-----GFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRAL------- 299 (459)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~------- 299 (459)
.. +.+........+....+..+.+.++ . |+.. ....+.....+..++..++.+++.||.++|+.
T Consensus 272 ~~--l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i-~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k 348 (489)
T PRK10207 272 FV--LMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSI-NPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMK 348 (489)
T ss_pred HH--HHHHHHHHHHHHHHcccHHHHHHHHhccccccceEE-CHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 11 1111222222223333344444442 2 2221 23444555666677788888999999998863
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHH
Q 012646 300 LISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVN 379 (459)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 379 (459)
+..+.++.+++.+.+....... ... ....+.++.+....+.+.+... ..+.....+.+..|++.++.++|+.+...
T Consensus 349 ~~~G~~l~~~~~~~~~~~~~~~-~~~--~~~~s~~~~i~~~~l~g~Ge~~-~~~~g~~~~~~~aP~~~~g~~~g~~~l~~ 424 (489)
T PRK10207 349 FTLGMFLCSLGFLTAAAAGMWF-ADA--QGLTSPWFIVLVYLFQSLGELF-ISALGLAMIAALVPQHLMGFILGMWFLTQ 424 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-cCC--CCccCHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 6666666666654443211111 110 0112234444445555555553 34454677788999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 012646 380 LFFTFVIAQIFLTL 393 (459)
Q Consensus 380 ~~g~~~~~~~~~~~ 393 (459)
.+|+.++..+....
T Consensus 425 ~ig~~lg~~l~~~~ 438 (489)
T PRK10207 425 AAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998887654
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-24 Score=182.22 Aligned_cols=339 Identities=15% Similarity=0.121 Sum_probs=255.5
Q ss_pred cccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q 012646 17 KHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVG 96 (459)
Q Consensus 17 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 96 (459)
..+++++|+|+|.+..|++++...+...+.+++..+++.|+|.++.+..++++..++.++-... +.+.++.+-.+.|.+
T Consensus 34 LL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~g 112 (395)
T COG2807 34 LLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAG 112 (395)
T ss_pred hHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhh
Confidence 4556788999999999999999999999999999999999999999999999999999998877 788899999999999
Q ss_pred hhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhcccccc-chhHHHHHhhHHHHHHHHHhhhccCCCh
Q 012646 97 IGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLET-WGWRLSLGLAAAPALMMTVGGILLPETP 175 (459)
Q Consensus 97 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~-~gwr~~f~~~~~~~~~~~~~~~~~~es~ 175 (459)
.+......++.+-+.+|+ +-+..++++....++|..+++.++ ....++ .|||....+.+.++++.++.++.-. .
T Consensus 113 Iav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~la--vpla~~~~gW~~aL~~WAl~allAl~~WlPq~--~ 187 (395)
T COG2807 113 IAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALA--VPLAQHSGGWRGALGFWALLALLALLIWLPQA--L 187 (395)
T ss_pred HHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhh--hHHHHhhccHHHHHHHHHHHHHHHHHHHhhhc--c
Confidence 999999999999999975 569999999999999999998883 443444 4799999999999998877665321 1
Q ss_pred hhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHhH
Q 012646 176 NSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYA 255 (459)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (459)
|. + ....+.+..+..+++|++. .+...+++..+...++....|+
T Consensus 188 r~-----~---------------------------~~~~~~~~~~~~~vw~~~~----aW~vtLfmGlqS~~~Y~~~~WL 231 (395)
T COG2807 188 RE-----Q---------------------------AASIATKLVSVRKVWRSPL----AWQVTLFMGLQSLLYYIVIGWL 231 (395)
T ss_pred cc-----c---------------------------ccccccccccccccccCch----hHHHHHHHHhhHHHHHHHHHHH
Confidence 10 0 0001111223344555554 4445555566666778899999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcC-CchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhh
Q 012646 256 PVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLG-RRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSI 334 (459)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (459)
|.++.+.|+|..++|.+.....+..++.++....+.+|.. +|+.......++.++.+.+.+. +....+
T Consensus 232 P~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~-----------P~~~~~ 300 (395)
T COG2807 232 PAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLA-----------PGQLPI 300 (395)
T ss_pred HHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh-----------hhhHHH
Confidence 9999999999999999999999999999999999999754 5666666666666666655543 112222
Q ss_pred HHHHHHHHHHHHHhhcccccccceec-ccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHHH
Q 012646 335 LVVVVICLFVLAFGWSWGPLGWTVPS-EIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFK-FGIFLFFAGWVTIM 412 (459)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 412 (459)
.. ..+.+.+.+..+. +....+. +.-.++..+.-.|+.+..+++-...+|.++|.+.|..| |...+...+.+.+.
T Consensus 301 lw---~~llG~G~G~~F~-laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~ 376 (395)
T COG2807 301 LW---ALLLGLGQGGAFP-LALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLL 376 (395)
T ss_pred HH---HHHHhCccchHHH-HHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHH
Confidence 22 2444444443332 2223333 44456677788999999999999999999999999887 44444444433333
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-23 Score=194.00 Aligned_cols=348 Identities=11% Similarity=-0.039 Sum_probs=221.7
Q ss_pred CcccCCchhhHHH--HHHHHHHHHHHHHhHh-hhhhhcCcchhhhHHHHHH-HHHHHHHH---HHhh-HHHHHHHHHHhh
Q 012646 23 NYCKYDNQGLAAF--TSSLYLAGLVASFVAS-PVTRDYGRRASIICGGISF-LLGAALNA---AAAN-LAMLLTGRILLG 94 (459)
Q Consensus 23 ~~~~~s~~~~~~~--~s~~~~~~~i~~~~~g-~l~dr~Grk~~l~~~~~~~-~~~~~~~~---~~~~-~~~l~~~r~l~G 94 (459)
+|.|.|.+++|.+ .+...+...+.+++++ +.+||+||||..++.+.+. .+.....+ ...+ ..+++..-++.+
T Consensus 29 ~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (390)
T TIGR02718 29 REDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACAS 108 (390)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence 4569999999997 4667888888888884 5799999998875555332 22222222 1222 334455556667
Q ss_pred hhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccCCC
Q 012646 95 VGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPET 174 (459)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~es 174 (459)
+..+...+...++..|..++++++...+....+..+|.++++.. .....+..|||..|++.++..++..+..++++|+
T Consensus 109 ~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~--~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~ 186 (390)
T TIGR02718 109 LASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAG--TLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDR 186 (390)
T ss_pred HHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77777888888888999988888988888998889999999877 4555566799999999998887766655555443
Q ss_pred hhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHh
Q 012646 175 PNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFY 254 (459)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (459)
++. +++.+ ++...+.++.+|++..+.......+ ..........+
T Consensus 187 ~~~---~~~~~-----------------------------~~~~~~~~~~l~~~~~~~~~~~~~l----~~~~~~~~~~~ 230 (390)
T TIGR02718 187 AVA---SPEAP-----------------------------LARRASLFRFFRRPLAWSLLALALL----SAMTAVSGFGL 230 (390)
T ss_pred CcC---ccccc-----------------------------hhhHHHHHHHHcCcCHHHHHHHHHH----HHHHHHHHHHH
Confidence 210 00000 0001134455555543333222222 22223344445
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHH-HHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhh
Q 012646 255 APVLFQSMGFKGDASLYSSAMTGA-VLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFS 333 (459)
Q Consensus 255 ~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (459)
.+.+.++.|+++++.+......+. ..+++.++.|++.||+++|+.+..+.....+............ .....
T Consensus 231 ~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 303 (390)
T TIGR02718 231 SKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFW-------LAPGI 303 (390)
T ss_pred hhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcc-------cCCcH
Confidence 666777789999999998887764 6667789999999999999988776655433322222111000 00111
Q ss_pred hHHHHHHHHHHHHHhhcccccccceecccCCc-cccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 012646 334 ILVVVVICLFVLAFGWSWGPLGWTVPSEIFPL-ETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIM 412 (459)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (459)
........+.....+...... .....+..++ +.+++.+++.+....+|..++|.+.|.+.|..|+...+..++++.+.
T Consensus 304 ~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~ 382 (390)
T TIGR02718 304 AVAWSCSAFGSLITGITSVAI-YTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVL 382 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 111222222222233332233 3343455554 88999999999999999999999999999998886666666665555
Q ss_pred HHHH
Q 012646 413 TIFV 416 (459)
Q Consensus 413 ~~~~ 416 (459)
+.+.
T Consensus 383 a~~~ 386 (390)
T TIGR02718 383 AILL 386 (390)
T ss_pred HHHH
Confidence 4443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-23 Score=196.54 Aligned_cols=355 Identities=14% Similarity=0.105 Sum_probs=225.0
Q ss_pred ccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHH------hhHHHHHHHHH
Q 012646 18 HAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAA------ANLAMLLTGRI 91 (459)
Q Consensus 18 ~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~------~~~~~l~~~r~ 91 (459)
.+.+++++|+|..+++++.+.. .....++++.|+++||+|||+++.++.+++.+++++++++ ++++.+++.|+
T Consensus 50 s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~ 128 (591)
T PTZ00207 50 SGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNG 128 (591)
T ss_pred HHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence 3455778999999999998874 4556778889999999999999999999999999999998 68999999999
Q ss_pred HhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhh-hc
Q 012646 92 LLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGG-IL 170 (459)
Q Consensus 92 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~ 170 (459)
+.|+|.+...+.+...+.+|+| ++||++.++...+.++|.++.+.+..... . .+|+..|++.++++++..++. .+
T Consensus 129 l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~--~-~~~~~~fl~l~vl~~vv~ll~~~~ 204 (591)
T PTZ00207 129 LMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF--S-DNTSAYFFFLMSFALVVGILAIVF 204 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HhHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999996 78999999999999999986554422222 1 368888888888877765544 33
Q ss_pred c--CCChhhHHhhCCHHHHHHHHHHHhCCc--------------------------------------hh----------
Q 012646 171 L--PETPNSLIERGKKVEGRRVLEKIRGTK--------------------------------------EV---------- 200 (459)
Q Consensus 171 ~--~es~~~l~~~~~~~~~~~~~~~~~~~~--------------------------------------~~---------- 200 (459)
+ |+.|++..++++.++.++..++.++.. ..
T Consensus 205 vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~ 284 (591)
T PTZ00207 205 MRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVI 284 (591)
T ss_pred eeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3 555555433332222222211111000 00
Q ss_pred -------------------------hHHHHHHHH-H---HHhhc-------c-C----CcchHHHhccCchhHHHHHHHH
Q 012646 201 -------------------------NAEYQDMVD-A---SELAN-------S-I----KHPFRNILERRNRPQLVMAIFM 239 (459)
Q Consensus 201 -------------------------~~~~~~~~~-~---~~~~~-------~-~----~~~~~~~~~~~~~~~~~~~~~~ 239 (459)
+.+..+..+ . .+.+. + . ..++.+.++ +.-+|++..
T Consensus 285 ~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~----~~d~Wll~~ 360 (591)
T PTZ00207 285 VLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLK----TARLWCLLW 360 (591)
T ss_pred HHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHh----chhHHHHHH
Confidence 000000000 0 00000 0 0 002222222 233566666
Q ss_pred HHhhhhcchHHHHHhHHHHHHhc-CCCCch--hHHHHHHHHHHHHHHhHHHHHHHhhcCCch--------hhhhhhHHHH
Q 012646 240 PMFQILTGINSILFYAPVLFQSM-GFKGDA--SLYSSAMTGAVLASSTLISIATVDKLGRRA--------LLISGGIQMI 308 (459)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~--------~~~~~~~~~~ 308 (459)
..++...........+.++.+.+ |.+.+. ...+.++.++++.+|++..|++.....+|+ ........+.
T Consensus 361 ~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~ 440 (591)
T PTZ00207 361 SIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCI 440 (591)
T ss_pred HHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHH
Confidence 66666666666667777787877 773333 233678889999999999998763222221 1111111233
Q ss_pred HHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHH-H
Q 012646 309 TCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVI-A 387 (459)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~-~ 387 (459)
++.+++.... + .....+..++.+.+.+..+... ...++|+|. ++-|+-.-+.....-+|+.+- .
T Consensus 441 ~~~lll~~~~------------p-~~~L~~~~~lvg~~~G~~~~~~-~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~ 505 (591)
T PTZ00207 441 ITMLTLFLTL------------P-KAALPLPYFIAAFANGFMAATI-ALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNR 505 (591)
T ss_pred HHHHHHHHHC------------C-ccHhHHHHHHHHHHhhHhHHHH-HHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHH
Confidence 3333333321 1 1234445555566666555444 577799999 888888777777777777666 5
Q ss_pred HHHHHHHhh
Q 012646 388 QIFLTLLCS 396 (459)
Q Consensus 388 ~~~~~~~~~ 396 (459)
.++|.++|+
T Consensus 506 ~l~G~~Yd~ 514 (591)
T PTZ00207 506 LLYGEWYTQ 514 (591)
T ss_pred HHHHHHHHH
Confidence 677878774
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=193.18 Aligned_cols=336 Identities=13% Similarity=0.065 Sum_probs=212.5
Q ss_pred CCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhh----hcCc-chhhhHHHHHHHHHHHHHHHHh------hHHHHHHHH
Q 012646 22 NNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTR----DYGR-RASIICGGISFLLGAALNAAAA------NLAMLLTGR 90 (459)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Gr-k~~l~~~~~~~~~~~~~~~~~~------~~~~l~~~r 90 (459)
++.+|+++.++|.+..+..+..++..|+.|.++| |+|| |+.++.+.+..+++..++...+ .+..+++..
T Consensus 34 t~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~ 113 (473)
T PRK10429 34 TDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTY 113 (473)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence 3456999999999999999999999999999999 6798 6777888888888876664432 234566667
Q ss_pred HHhhhhhhhhhhhhhhhhhhcc-CccchhHHHHHHHHHHHHHHHHHHHHhhh-----ccccccchhHHHHHhhHHHHHHH
Q 012646 91 ILLGVGIGFGNQAVPLYLSEMA-PTHLRGGLNMMFQLATTLGIFTANMINYG-----TQKLETWGWRLSLGLAAAPALMM 164 (459)
Q Consensus 91 ~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~l~~~-----~~~~~~~gwr~~f~~~~~~~~~~ 164 (459)
++.+++.....+.-.++..|.. +++||.+..++-..+.++|..+.+.+... +...+..+|+....+.+++.++.
T Consensus 114 ~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~ 193 (473)
T PRK10429 114 ILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVS 193 (473)
T ss_pred HHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence 7788888888888889999998 58999999988777777765554443211 11112246888877777776665
Q ss_pred HHhh-hccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccC-chhHHHHHHHHHHh
Q 012646 165 TVGG-ILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERR-NRPQLVMAIFMPMF 242 (459)
Q Consensus 165 ~~~~-~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 242 (459)
.+.. +..+|.++.. +. +.+++++.+.++.++.. +.++... .....+
T Consensus 194 ~~~~~~~~~e~~~~~----~~---------------------------~~~~~~~~~~~~~~~~~~~n~~~~~-ll~~~~ 241 (473)
T PRK10429 194 TIITLRNVHEVYSSD----NQ---------------------------VSAEGSHLTLKDIVALIYKNDQLSC-LLGMAL 241 (473)
T ss_pred HHHHHcCceecCCcc----cc---------------------------ccccccCCCHHHHHHHHhcCHHHHH-HHHHHH
Confidence 4444 3366653100 00 00001122344433311 1122222 222222
Q ss_pred hhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhc
Q 012646 243 QILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKF 322 (459)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (459)
...........+.+++.+....+....+.......++.+++.++.+++.||+|+|+.+..+..+..++.+.+.....
T Consensus 242 ~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~--- 318 (473)
T PRK10429 242 AYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGL--- 318 (473)
T ss_pred HHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 22233344444555555543334455566666667888999999999999999999988777655554444332210
Q ss_pred CCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCC-------ccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012646 323 GPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFP-------LETRSAGQSITVAVNLFFTFVIAQIFLTLLC 395 (459)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 395 (459)
. .....+..++...+.+.+.+... +..+++.+|..+ .+..|..+|.......++..+++.+.|.+.+
T Consensus 319 ~-----~~~~~~~~~i~~~l~g~~~~~~~-~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 319 A-----APHNALLIVIAGILLNIGTALFW-VLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred c-----CchhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11223333333444444444333 344567778755 3345668899999999999999999999887
Q ss_pred hch
Q 012646 396 SFK 398 (459)
Q Consensus 396 ~~~ 398 (459)
..|
T Consensus 393 ~~G 395 (473)
T PRK10429 393 LIG 395 (473)
T ss_pred HcC
Confidence 654
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-22 Score=190.41 Aligned_cols=359 Identities=11% Similarity=0.050 Sum_probs=209.4
Q ss_pred cccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhh-cCcchhhhHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhh
Q 012646 17 KHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRD-YGRRASIICGGISFLLGAALNAAAA-NLAMLLTGRILLG 94 (459)
Q Consensus 17 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G 94 (459)
.+...++++|++..+.+++.+.+........+++|+++|| +|||+.++.+.++.+++.+++++++ +.+.+.++|+++|
T Consensus 44 l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~g 123 (500)
T PRK09584 44 MAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIA 123 (500)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 4444557789999999999988877767777899999999 5999999999999999999998874 5667778999999
Q ss_pred hhhhhhhhhhhhhhhhccCccc--hhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhh----
Q 012646 95 VGIGFGNQAVPLYLSEMAPTHL--RGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGG---- 168 (459)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~---- 168 (459)
++.|...+...+++.|++|+++ |..++++++.+.++|..++|.+ .+...+..|||+.|++.++..++..+..
T Consensus 124 ig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i--~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~ 201 (500)
T PRK09584 124 VGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLA--TPWLAAKYGWSVAFALSVVGMLITVVNFAFCQ 201 (500)
T ss_pred HhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHH--HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999988999999999998653 4568889999999999999999 5555566799999999876544443322
Q ss_pred hccCCChhhHHhhCCHHHHHHH------------HHHHhCCchhhHHHHHH---HH-HHHhhccCCcchHHHhccCchhH
Q 012646 169 ILLPETPNSLIERGKKVEGRRV------------LEKIRGTKEVNAEYQDM---VD-ASELANSIKHPFRNILERRNRPQ 232 (459)
Q Consensus 169 ~~~~es~~~l~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~ 232 (459)
..++|.++.. .+++.+..... ........+........ .. ........+ .+...+++
T Consensus 202 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 274 (500)
T PRK09584 202 RWVKQYGSKP-DFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAFA------MKGAARRK 274 (500)
T ss_pred HHhccCCCCC-CccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhh------cCHHHHHH
Confidence 2233321100 00001100000 00000000000000000 00 000000000 00011112
Q ss_pred HHHHHHHHHhhhhcchHHHHHhHHHHHHh---cCCC------CchhHHHHHHHHHHHHHHhHHHHHHHhhc----CCchh
Q 012646 233 LVMAIFMPMFQILTGINSILFYAPVLFQS---MGFK------GDASLYSSAMTGAVLASSTLISIATVDKL----GRRAL 299 (459)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----~~~~~ 299 (459)
....+.+. . ....+.......+..+.. .+.+ ....+++.....+..++..++..++-+|. +..+.
T Consensus 275 ~~~~~~~~-~-~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~ 352 (500)
T PRK09584 275 MIVAFILM-L-EAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHK 352 (500)
T ss_pred HHHHHHHH-H-HHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHH
Confidence 22221111 1 111122222333333221 1111 11245666677767777766665444444 44466
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHH
Q 012646 300 LISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVN 379 (459)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 379 (459)
+.++.++.+++.+.+...... .. .....+.++.+....+.+.+- ....|....++.+..|++.||..+|+.....
T Consensus 353 ~~~G~~l~~l~f~~l~~~~~~--~~--~~~~vs~~~~~~~~~l~~~ge-~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~ 427 (500)
T PRK09584 353 FAIGMVLCSGAFLVLPLGAKF--AN--DAGIVSVNWLIASYGLQSIGE-LMISGLGLAMVAQLVPQRLMGFIMGSWFLTT 427 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--cC--CCCccCHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 777777777777766554211 00 001122333333344444333 3556666788899999999999999888777
Q ss_pred HHHHHHHHHHHH
Q 012646 380 LFFTFVIAQIFL 391 (459)
Q Consensus 380 ~~g~~~~~~~~~ 391 (459)
.+|..++..+.+
T Consensus 428 a~g~~~~g~~~~ 439 (500)
T PRK09584 428 AGAALIAGYVAN 439 (500)
T ss_pred HHHHHHHHHHHH
Confidence 777777766665
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-21 Score=177.95 Aligned_cols=379 Identities=10% Similarity=0.069 Sum_probs=238.1
Q ss_pred CcccCCchhhHHHHHHHHHHHHHHHHhHhhhhh----hcCcchhhhH-HHHHHHHHHHHHHHHhhHH-------------
Q 012646 23 NYCKYDNQGLAAFTSSLYLAGLVASFVASPVTR----DYGRRASIIC-GGISFLLGAALNAAAANLA------------- 84 (459)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grk~~l~~-~~~~~~~~~~~~~~~~~~~------------- 84 (459)
+++|+++.+.+++..+..+...+.+++.|.++| |+||||.++. +.....++.++.++++++.
T Consensus 32 ~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~ 111 (477)
T TIGR01301 32 QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKP 111 (477)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchh
Confidence 457899999999999999999999999999999 5999998877 4666667777777776643
Q ss_pred ----HHHHHHHHhhhhhhhhhhhhhhhhhhccCccch--hHHHHHHHHHHHHHHHHHHHHhhhcccccc-----------
Q 012646 85 ----MLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLR--GGLNMMFQLATTLGIFTANMINYGTQKLET----------- 147 (459)
Q Consensus 85 ----~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~----------- 147 (459)
.++++-.+..++.....+...++++|.+|+++| +.+.++.+...++|.++|+.++......+.
T Consensus 112 ~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~ 191 (477)
T TIGR01301 112 RAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGV 191 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccccc
Confidence 223333344557777888889999999998865 579999999999999999998543211110
Q ss_pred --chhHHHHHhhHHHHHHHHHhh-hccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHH
Q 012646 148 --WGWRLSLGLAAAPALMMTVGG-ILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNI 224 (459)
Q Consensus 148 --~gwr~~f~~~~~~~~~~~~~~-~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (459)
.+.|+.|++.++..++..+.. +.++|.|....++.+.++. ++ .++.+.+..++++
T Consensus 192 ~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~-------~~---------------~~~~~~~~~~~~i 249 (477)
T TIGR01301 192 SCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEA-------AP---------------PSKHGEEAFFGEL 249 (477)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhc-------cc---------------ccccchhhhHHHH
Confidence 267899999888877776654 5588876311000000000 00 0000011223333
Q ss_pred hccC-chhHHHHHHHHHHhhhhcchHHHHHhHHHHHHh--cCCCCc------h----hHHHHHHHHHHHHHHhHHHHHHH
Q 012646 225 LERR-NRPQLVMAIFMPMFQILTGINSILFYAPVLFQS--MGFKGD------A----SLYSSAMTGAVLASSTLISIATV 291 (459)
Q Consensus 225 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~------~----~~~~~~~~~~~~~~~~~~~g~l~ 291 (459)
++.. ..++....+++..++.+.++..+..|.+.+..+ ++-++. + ..+.....++...+.+++..++.
T Consensus 250 ~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~ 329 (477)
T TIGR01301 250 FGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLC 329 (477)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221 222334444444455555666666666665543 443321 1 22344555666667777888999
Q ss_pred hhcCC-chhhhhhhHHHHHHHHHHHHHHhhhcC--C---C-c-cccchh-hhHHHHHHHHHHHHHhhcccccccceeccc
Q 012646 292 DKLGR-RALLISGGIQMITCQVIVSIILGLKFG--P---N-Q-ELSKSF-SILVVVVICLFVLAFGWSWGPLGWTVPSEI 362 (459)
Q Consensus 292 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~-~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (459)
+|+|+ |+....+.++.++++....+....... + . . ..+... .+..++.....+..++.. ..++++++++.
T Consensus 330 ~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~-~siPfal~s~~ 408 (477)
T TIGR01301 330 RGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAIT-YSIPFALASIR 408 (477)
T ss_pred HHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHH-HHHhHHHHHHH
Confidence 99985 666677777777777766654311000 0 0 0 000001 244555555556665533 45668888998
Q ss_pred CCc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhhch--hHHHHHHHHHHH-HHHHHHHhccCCCC
Q 012646 363 FPL--ETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFK--FGIFLFFAGWVT-IMTIFVYFFLPETK 424 (459)
Q Consensus 363 ~p~--~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~ 424 (459)
.|+ +..|..+|+.|.+..+...+.....|.+.+..+ ....+.++++.. +.++...+.+|+.+
T Consensus 409 ~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 409 SSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred ccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 884 456999999999999999999988888666554 233444444444 44555566677655
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-21 Score=177.75 Aligned_cols=340 Identities=15% Similarity=0.082 Sum_probs=230.2
Q ss_pred hhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcC-cchhhhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 012646 11 DVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYG-RRASIICGGISFLLGAALNAAAANLAMLLTG 89 (459)
Q Consensus 11 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-rk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (459)
..+.+-.+... ++.|+|..|+|.+.+...+...++++++|.++||++ +|+++.+..++.++........++++.+++.
T Consensus 19 G~~~p~~~~~L-~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~ 97 (400)
T PF03825_consen 19 GAFLPYLPLYL-ESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVI 97 (400)
T ss_pred HHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 33444433333 335799999999999999999999999999999986 5788888888888877777788899999988
Q ss_pred HHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhh--hccccccchhHHHHHhhHHHHHHHHHh
Q 012646 90 RILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINY--GTQKLETWGWRLSLGLAAAPALMMTVG 167 (459)
Q Consensus 90 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~--~~~~~~~~gwr~~f~~~~~~~~~~~~~ 167 (459)
.++..+......|...++..+...+ +++-.|-.-...++|.+++..... .....+..+..+.+++.+..+++....
T Consensus 98 ~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~ 175 (400)
T PF03825_consen 98 MLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGF 175 (400)
T ss_pred HHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHH
Confidence 8888988888888888888888753 233344444455555555533200 111111112334566666655555555
Q ss_pred hhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcc
Q 012646 168 GILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTG 247 (459)
Q Consensus 168 ~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (459)
.+.+|+.|+....+ ++.++....+..+++|+++. ..+.+..+.....
T Consensus 176 ~l~lp~~~~~~~~~-----------------------------~~~~~~~~~~~~~llk~~~~----~~Fll~~~l~~~~ 222 (400)
T PF03825_consen 176 ALFLPKTPPKRSAK-----------------------------ESVKKLLGLDALKLLKNPRF----LVFLLAAFLIGIS 222 (400)
T ss_pred HHhCCCCccccccC-----------------------------CCcccccchHHHHHhcCccH----HHHHHHHHHHHHH
Confidence 56678776110000 00001111123356666552 3333333344445
Q ss_pred hHHHHHhHHHHHHhcC-CCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCc
Q 012646 248 INSILFYAPVLFQSMG-FKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQ 326 (459)
Q Consensus 248 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (459)
......+.+.++++.| .+....+....+..+++++.-...+++.+|+|.|+++.++....++=..+.....
T Consensus 223 ~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~-------- 294 (400)
T PF03825_consen 223 HAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS-------- 294 (400)
T ss_pred HHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence 5667777888888877 7777888888888899999999999999999999999998888887777766541
Q ss_pred cccchhhhHHHHH----HHHHHHHHhhcccccccceecccCCccccchhhHHHHHH-HHHHHHHHHHHHHHHHhhchh
Q 012646 327 ELSKSFSILVVVV----ICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAV-NLFFTFVIAQIFLTLLCSFKF 399 (459)
Q Consensus 327 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~ 399 (459)
++.+..... ..+.+..++...... ..++.+..|++.|++++++++.. ..+|..++..+.|++.|+.+.
T Consensus 295 ----~~~~~~~~~~~l~q~lhG~tf~~~~~a~-~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~ 367 (400)
T PF03825_consen 295 ----DPWPFIVALQLLGQLLHGLTFGLFHAAS-VRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGA 367 (400)
T ss_pred ----CCcHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 111111111 234565565544443 57888999999999999998876 579999999999999998763
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=185.19 Aligned_cols=330 Identities=11% Similarity=0.034 Sum_probs=208.8
Q ss_pred CCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhh----cCc-chhhhHHHHHHHHHHHHHHHHhh------HHHHHHHH
Q 012646 22 NNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRD----YGR-RASIICGGISFLLGAALNAAAAN------LAMLLTGR 90 (459)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Gr-k~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r 90 (459)
.+++|+++.++|.+.++..+..++..|+.|.++|| +|| |+.++.+.+..+++.++....++ +..+++..
T Consensus 37 t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~ 116 (444)
T PRK09669 37 TDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTY 116 (444)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence 45679999999999999999999999999999998 787 56677787888777766555443 45666677
Q ss_pred HHhhhhhhhhhhhhhhhhhhcc-CccchhHHHHHHHHHHHHHHHHHHHHhhhc--c---ccccchhHHHHHhhHHHHHHH
Q 012646 91 ILLGVGIGFGNQAVPLYLSEMA-PTHLRGGLNMMFQLATTLGIFTANMINYGT--Q---KLETWGWRLSLGLAAAPALMM 164 (459)
Q Consensus 91 ~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~--~---~~~~~gwr~~f~~~~~~~~~~ 164 (459)
++.+.+.......-.++.+|+. ++++|.+..++...+..+|..+++.+.... . .....+|+..+.+.++++++.
T Consensus 117 ~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~ 196 (444)
T PRK09669 117 ILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVL 196 (444)
T ss_pred HHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence 7777777777777788999998 568899888888888888777766542111 1 112358999888888877766
Q ss_pred HHhhh-ccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhh
Q 012646 165 TVGGI-LLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQ 243 (459)
Q Consensus 165 ~~~~~-~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (459)
.+..+ ..+|.++. ++ +++.+.++..++.++++..+......++...
T Consensus 197 ~~~~~~~~~e~~~~----~~----------------------------~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~- 243 (444)
T PRK09669 197 FFCCFFMTKERYTP----EV----------------------------DNSSSVWKDLKLLLGNSQWRIMFIFNVVLLT- 243 (444)
T ss_pred HHHHhCCeEEecCC----CC----------------------------cCCCCHHHHHHHHhCCchHHHHHHHHHHHHH-
Confidence 55443 34553210 00 0000112234445555554333322222111
Q ss_pred hhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcC
Q 012646 244 ILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFG 323 (459)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (459)
.........+++.+..--+++..+.......+..+++.++.+++.||+|+|+....+.....+....+...
T Consensus 244 ---~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~------ 314 (444)
T PRK09669 244 ---AVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI------ 314 (444)
T ss_pred ---HHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh------
Confidence 12222223333333221122333444555567778888899999999999998887765554433322221
Q ss_pred CCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCC-------ccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012646 324 PNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFP-------LETRSAGQSITVAVNLFFTFVIAQIFLTLLCS 396 (459)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 396 (459)
+.++.+...+...+.+.+.+. ..+..+++++|..+ .+..|...|..+....+|..+++.+.|.+.+.
T Consensus 315 -----~~~~~~~~~~~~~i~g~~~~~-~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~ 388 (444)
T PRK09669 315 -----PPSNVWLIFALNILFNFIQNL-TTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW 388 (444)
T ss_pred -----CcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112233334444445555553 33555778788775 23456678899999999999999999999886
Q ss_pred chh
Q 012646 397 FKF 399 (459)
Q Consensus 397 ~~~ 399 (459)
.|+
T Consensus 389 ~Gy 391 (444)
T PRK09669 389 VDY 391 (444)
T ss_pred cCC
Confidence 654
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-20 Score=173.66 Aligned_cols=364 Identities=15% Similarity=0.100 Sum_probs=244.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchh-hhHHHHHHHHHHHHHHHH--hhHHHHHHHHHHhhhhhhhhhhhhhh
Q 012646 30 QGLAAFTSSLYLAGLVASFVASPVTRDYGRRAS-IICGGISFLLGAALNAAA--ANLAMLLTGRILLGVGIGFGNQAVPL 106 (459)
Q Consensus 30 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~-l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~ 106 (459)
+..++..++..+..++..|+.|.++|+-|+||. +.....+..+++.+..+. ++++...+.-++.-++.+.......+
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888899999999999999999986655 455555666667766664 34555555666666788888888999
Q ss_pred hhhhccCccch--------------------------hHHHHHHHHHHHHHHHHHHHHhhhccccc------cchhHHHH
Q 012646 107 YLSEMAPTHLR--------------------------GGLNMMFQLATTLGIFTANMINYGTQKLE------TWGWRLSL 154 (459)
Q Consensus 107 ~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~~~~l~~~~~~~~------~~gwr~~f 154 (459)
++.|..+++++ ++..+.-.....+|.++..++........ ..+-|..+
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 99999999888 89888888888888887766643332211 23468888
Q ss_pred HhhHHHHHHHH-HhhhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHH
Q 012646 155 GLAAAPALMMT-VGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQL 233 (459)
Q Consensus 155 ~~~~~~~~~~~-~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (459)
.+.++.-++.. ...+++||.|+....+....-.. ..- ...++.+|+.++.+-
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~-----------------------~g~----~~l~~t~k~~~~~~~ 282 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLR-----------------------FGF----KRLWRTFKEIRKLRQ 282 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHH-----------------------HHH----HHHHHHHHHHHhChH
Confidence 88887766654 45566888763100000000000 000 011122222222233
Q ss_pred HHHHHHHHhhhhcchHHHHHhHHHHHH-hcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCc--hhhhhhhHHHHHH
Q 012646 234 VMAIFMPMFQILTGINSILFYAPVLFQ-SMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRR--ALLISGGIQMITC 310 (459)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~~ 310 (459)
...+++..++..-+...+......+.+ .+|++..+.........+..++|+++.+++.||+|.| +.+..+.....+.
T Consensus 283 ~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i 362 (477)
T PF11700_consen 283 LFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIII 362 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 444555666666666777777777766 5999999999999999999999999999999999998 6666655554333
Q ss_pred HHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHH
Q 012646 311 QVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIF 390 (459)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 390 (459)
.+...+-. . +. .....+.+...+...+.+.+.+ ...+...++.+|+.|+++.+..+|++...+...+.++|.++
T Consensus 363 ~~~g~~G~--~--~~-~~g~~~~~~f~~~a~~~G~~~G-~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~ 436 (477)
T PF11700_consen 363 PLYGLFGF--W--PS-FFGLKSPWEFWVLAVLIGLFMG-GIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLF 436 (477)
T ss_pred HHHHHHHh--h--hc-ccCcccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22222100 0 00 0012334445555555555555 34455578889999999999999999999999999999999
Q ss_pred HHHHhhch-hHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 012646 391 LTLLCSFK-FGIFLFFAGWVTIMTIFVYFFLPETKGV 426 (459)
Q Consensus 391 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (459)
|.+.+..+ ....+....+..+++++++..++.+|++
T Consensus 437 g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g~ 473 (477)
T PF11700_consen 437 GLITDATGSQRYGFLFLLVLFLIGLILLFFVDVEKGR 473 (477)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHHHHhhccchhhh
Confidence 99999887 4555556666666677776766655543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-22 Score=192.07 Aligned_cols=385 Identities=11% Similarity=0.011 Sum_probs=238.5
Q ss_pred hhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcC-----cchhhhHHHHHHH-HHHHHHHHHhhHH-HH
Q 012646 14 LKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYG-----RRASIICGGISFL-LGAALNAAAANLA-ML 86 (459)
Q Consensus 14 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-----rk~~l~~~~~~~~-~~~~~~~~~~~~~-~l 86 (459)
.....+..++++|+|+++++...+...+...+-.+ +|+++||++ ||+.++++.++.+ ++....+..++.. ..
T Consensus 45 ~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~ 123 (468)
T TIGR00788 45 RLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVA 123 (468)
T ss_pred hhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHH
Confidence 34455666788999999999999999999999666 999999998 7888888877763 4433344335544 44
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhccCccchhHH---HHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHH
Q 012646 87 LTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGL---NMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALM 163 (459)
Q Consensus 87 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~---~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~ 163 (459)
.+.+++.+++.+...++..++..|..+ +++... .+......++|.++++.+ .+...+..+||..|++.+...++
T Consensus 124 ~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l--~G~l~~~~~~~~~f~~~a~l~ll 200 (468)
T TIGR00788 124 AAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLL--GGPLLDKTLTRILFLITAALLLL 200 (468)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHH--HHHHHHhcCcchHHHHHHHHHHH
Confidence 448899999999999999999999998 444433 333334455888888888 44555667899999998888877
Q ss_pred HHHhhhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhh
Q 012646 164 MTVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQ 243 (459)
Q Consensus 164 ~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (459)
..+..++++|++.....+.+.++.. ....... ...+..++.....++.++++..++.....++.. .
T Consensus 201 ~~~~~~~~~E~~~~~~~~~~~~~~~---------~~~~~~~----~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~-~ 266 (468)
T TIGR00788 201 QLFVSNLSKERRAFVRPRIGTYLEM---------NMALLTL----GVLANVKVQILGLRGAIQLLEIAKPLIFIFLSY-A 266 (468)
T ss_pred HHHHHHhcccccccccccccccchh---------hhhhhhh----hHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH-h
Confidence 7555677788631100000000000 0000000 000000000111222333333222222222201 1
Q ss_pred hhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcC
Q 012646 244 ILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFG 323 (459)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (459)
.... .....+. ...+..|+++.+.|......+++.+++..+.+++.+|++.|+.+.++.++..++......... ...
T Consensus 267 ~~~~-~~~~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~-~~~ 343 (468)
T TIGR00788 267 NLPG-ASGSVFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVK-RWN 343 (468)
T ss_pred hcCC-CCceeEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeee-ccc
Confidence 1111 1111111 111348999999999999999999999999999999999999988877777666544321110 000
Q ss_pred CCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhch-----
Q 012646 324 PNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFK----- 398 (459)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~----- 398 (459)
.. ......+.......+.....+..+.+. ..++.+..|++.+++.+++.+.+.++|..+++.+.+.+.++.|
T Consensus 344 ~~--~gi~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~ 420 (468)
T TIGR00788 344 LA--FGISDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDN 420 (468)
T ss_pred cc--cCCCCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 00 000112233333445555666666666 5777899999999999999999999999999999999988877
Q ss_pred hHHHHHHHHHHH---HHHHHHHhccCC
Q 012646 399 FGIFLFFAGWVT---IMTIFVYFFLPE 422 (459)
Q Consensus 399 ~~~~~~~~~~~~---~~~~~~~~~~~~ 422 (459)
+...+....++. ++.+.+..++|+
T Consensus 421 ~~~~~~~i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 421 SNNLWLLILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 444444333333 333344445665
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-19 Score=172.60 Aligned_cols=326 Identities=10% Similarity=0.015 Sum_probs=199.6
Q ss_pred CcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhh----cCcc-hhhhHHHHHHHHHHHHHHHHhh------HHHHHHHHH
Q 012646 23 NYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRD----YGRR-ASIICGGISFLLGAALNAAAAN------LAMLLTGRI 91 (459)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grk-~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~ 91 (459)
+.+|+++..+|.+..+.-+--++..|+.|.++|| +||| +.++++.+..+++.+++...++ ...+.+.-+
T Consensus 38 ~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~ 117 (460)
T PRK11462 38 DIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYT 117 (460)
T ss_pred HhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 4569999999999999999999999999999996 7875 5666787888888777654442 445666777
Q ss_pred HhhhhhhhhhhhhhhhhhhccC-ccchhHHHHHHHHHHHHHHHHHHHHhhhcc-----ccccchhHHHHHhhHHHHHHHH
Q 012646 92 LLGVGIGFGNQAVPLYLSEMAP-THLRGGLNMMFQLATTLGIFTANMINYGTQ-----KLETWGWRLSLGLAAAPALMMT 165 (459)
Q Consensus 92 l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~-----~~~~~gwr~~f~~~~~~~~~~~ 165 (459)
+..++.......-.++..|..+ ++||++..++...+..+|..+++.+..... .....+|+....+.+++.+++.
T Consensus 118 ~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~ 197 (460)
T PRK11462 118 LLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMML 197 (460)
T ss_pred HHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 7788888888888899999986 789999999999999988877765522111 1112478888777777766665
Q ss_pred Hhhh-ccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhh
Q 012646 166 VGGI-LLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQI 244 (459)
Q Consensus 166 ~~~~-~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (459)
++.+ ..+|.++. + +++.+.++..+..++++..+.......+...
T Consensus 198 ~i~~~~~kE~~~~-----~----------------------------~~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~-- 242 (460)
T PRK11462 198 AFCFFTTKERVEA-----P----------------------------PTTTSMREDLRDIWQNDQWRIVGLLTIFNIL-- 242 (460)
T ss_pred HHHHhcceeccCC-----C----------------------------ccCCCHHHHHHHHhCChHHHHHHHHHHHHHH--
Confidence 4443 34553310 0 0000011123334444433322222222222
Q ss_pred hcchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcC
Q 012646 245 LTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFG 323 (459)
Q Consensus 245 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (459)
..........++.+. .|. +...+.......++.+++.++++++.||+++|+....+.....+...++.+.
T Consensus 243 --~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~------ 313 (460)
T PRK11462 243 --AVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV------ 313 (460)
T ss_pred --HHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh------
Confidence 112222222333332 232 2334556667778889999999999999999988765444333333222221
Q ss_pred CCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCC-------ccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012646 324 PNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFP-------LETRSAGQSITVAVNLFFTFVIAQIFLTLLCS 396 (459)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 396 (459)
+........+..++.+.+.+ ...++.+++.+|..+ .+..|...+.......+|..+++.+.|.+.+.
T Consensus 314 -----~~~~~~~~~~~~~l~g~~~~-~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~ 387 (460)
T PRK11462 314 -----PMQASITMFVFIFVIGVLHQ-LVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY 387 (460)
T ss_pred -----chhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112122222333333332 233444556666655 23334556777788999999999999988765
Q ss_pred ch
Q 012646 397 FK 398 (459)
Q Consensus 397 ~~ 398 (459)
.|
T Consensus 388 ~G 389 (460)
T PRK11462 388 GG 389 (460)
T ss_pred cC
Confidence 44
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-20 Score=175.87 Aligned_cols=329 Identities=10% Similarity=0.039 Sum_probs=196.4
Q ss_pred cCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhc----Ccch-hhhHHHHHHHHHHHHHHHHh-------hHHHHHH
Q 012646 21 ENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDY----GRRA-SIICGGISFLLGAALNAAAA-------NLAMLLT 88 (459)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~----Grk~-~l~~~~~~~~~~~~~~~~~~-------~~~~l~~ 88 (459)
.++.+|++..++|.+.+...+..++..++.|.++||. |||| .++.+.+...+..++....+ ....++.
T Consensus 35 ~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (448)
T PRK09848 35 YTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYL 114 (448)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHH
Confidence 3556799999999999999999999999999999996 7666 44666665555444432111 2233455
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhccC-ccchhHHHHHHHHH-----HHHHHHHHHHHhhhccccccchhHHHHHhhHHHHH
Q 012646 89 GRILLGVGIGFGNQAVPLYLSEMAP-THLRGGLNMMFQLA-----TTLGIFTANMINYGTQKLETWGWRLSLGLAAAPAL 162 (459)
Q Consensus 89 ~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~-----~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~ 162 (459)
..++.+++.+...+...++..+..+ +++|.+..+.-..+ ..+|..++|.++.........+|.....+.+++++
T Consensus 115 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~ 194 (448)
T PRK09848 115 TYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGM 194 (448)
T ss_pred HHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence 5677788888888777777777765 46788876665543 33555666666322110001112211123333333
Q ss_pred HHHHh-hhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHH
Q 012646 163 MMTVG-GILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPM 241 (459)
Q Consensus 163 ~~~~~-~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (459)
+..+. ....||+++. + +++...+..++.+++++... ...+..
T Consensus 195 ~~~~~~~~~~~e~~~~---~------------------------------~~~~~~~~~~~~l~~n~~f~----~~~~~~ 237 (448)
T PRK09848 195 VLYFICFKSTRENVVR---I------------------------------VAQPSLKISLQTLKRNRPLF----MLCIGA 237 (448)
T ss_pred HHHHHHHcCcEeccCC---C------------------------------ccCCCHHHHHHHHhCCchHH----HHHHHH
Confidence 33222 2335654310 0 00000112244555555432 222222
Q ss_pred hhhhcchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhh
Q 012646 242 FQILTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGL 320 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
+.............|++.++ +|.+....++......++.+++.++.+++.||+++|+.+..+..+..++.+.+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~--- 314 (448)
T PRK09848 238 LCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV--- 314 (448)
T ss_pred HHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc---
Confidence 22333334445556666665 67665555554454466778889999999999999999988887777666554432
Q ss_pred hcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCcc-------ccchhhHHHHHHHHHHHHHHHHHHHHH
Q 012646 321 KFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLE-------TRSAGQSITVAVNLFFTFVIAQIFLTL 393 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~g~~~~~~~~g~~~~~~~~~~~ 393 (459)
+..+.+.......+.+.+.+... +...+..+|..|.+ .+|...|+.+....+|..+++.+.+.+
T Consensus 315 --------~~~~~~~~~~~~~l~g~G~~~~~-~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 315 --------SVWSLPVALVALAIASIGQGVTM-TVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred --------CchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223333333444444544443 33456667777543 458899999999999999999999988
Q ss_pred Hhhch
Q 012646 394 LCSFK 398 (459)
Q Consensus 394 ~~~~~ 398 (459)
.+..|
T Consensus 386 l~~~G 390 (448)
T PRK09848 386 LGLSG 390 (448)
T ss_pred HHHcC
Confidence 76554
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-19 Score=165.66 Aligned_cols=329 Identities=14% Similarity=0.137 Sum_probs=236.6
Q ss_pred CCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhh----cCc-chhhhHHHHHHHHHHHHHHHHhh------HHHHHHHH
Q 012646 22 NNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRD----YGR-RASIICGGISFLLGAALNAAAAN------LAMLLTGR 90 (459)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Gr-k~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r 90 (459)
.+.+|+++..+|.+..+.-+--++..|+.|.++|| +|| |+.++++.+..++.+.++-.+++ ....++.-
T Consensus 40 Tdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY 119 (467)
T COG2211 40 TDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTY 119 (467)
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHH
Confidence 45579999999999999999999999999999996 786 57788898999999998877763 45666778
Q ss_pred HHhhhhhhhhhhhhhhhhhhccC-ccchhHHHHHHHHHHHHHHHHHHHH-----hhhccccccchhHHHHHhhHHHHHHH
Q 012646 91 ILLGVGIGFGNQAVPLYLSEMAP-THLRGGLNMMFQLATTLGIFTANMI-----NYGTQKLETWGWRLSLGLAAAPALMM 164 (459)
Q Consensus 91 ~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l-----~~~~~~~~~~gwr~~f~~~~~~~~~~ 164 (459)
.+.+++.......-.++..|..+ ++||.+..++-+.+.++|..+...+ ...+......||+..-.+.++++++.
T Consensus 120 ~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~ 199 (467)
T COG2211 120 MLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVIL 199 (467)
T ss_pred HHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHH
Confidence 89999999998888999999985 6899999999999988886554433 22222222468999998888888887
Q ss_pred HHhhhc-cCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchH----HHhccCchhHHHHHHHH
Q 012646 165 TVGGIL-LPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFR----NILERRNRPQLVMAIFM 239 (459)
Q Consensus 165 ~~~~~~-~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 239 (459)
.+..++ ++|.+.. ....++..+.+++ ..++++..+ . .++
T Consensus 200 ~l~~~~~v~ER~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~Nrp~~---~-~l~ 243 (467)
T COG2211 200 LLFCFFNVKERVVE--------------------------------TQPTKTGVKLKLKDSFLLIFKNRPLL---L-LLL 243 (467)
T ss_pred HHHHHHHhhcccCc--------------------------------cccCcccccccHHHHHHHHHccchHH---H-HHH
Confidence 766655 6665410 0000111223333 344444322 2 222
Q ss_pred HHhhhhcchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHH
Q 012646 240 PMFQILTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIIL 318 (459)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (459)
...+.....+.......+|.+. .|.+.............+.+++.++..++.+|+|+|++..++.++..++.+++.+.
T Consensus 244 ~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~- 322 (467)
T COG2211 244 MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT- 322 (467)
T ss_pred HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhh-
Confidence 3344444445555555556554 67777777777888888888889999999999999999999988888888777765
Q ss_pred hhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCC-------ccccchhhHHHHHHHHHHHHHHHHHHH
Q 012646 319 GLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFP-------LETRSAGQSITVAVNLFFTFVIAQIFL 391 (459)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~~ 391 (459)
+.++....++..++...+.+ ...++.+++++|..+ .+..|...|...++.-+|.+++..+.|
T Consensus 323 ----------~~~~~~l~~~~~~i~~~g~~-~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g 391 (467)
T COG2211 323 ----------PAGSVVLIVVALIIAGVGTG-IANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPG 391 (467)
T ss_pred ----------cCcchHHHHHHHHHHHHHhh-ccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22233334444444445544 446677899888764 335577889999999999999999999
Q ss_pred HHHhhch
Q 012646 392 TLLCSFK 398 (459)
Q Consensus 392 ~~~~~~~ 398 (459)
++.+..|
T Consensus 392 ~~L~~~G 398 (467)
T COG2211 392 WILGAIG 398 (467)
T ss_pred HHHHHcC
Confidence 9988765
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=5e-20 Score=174.17 Aligned_cols=330 Identities=15% Similarity=0.145 Sum_probs=235.7
Q ss_pred CCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhh----hcCcc-hhhhHHHHHHHHHHHHHHHH-h-------hHHHHHH
Q 012646 22 NNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTR----DYGRR-ASIICGGISFLLGAALNAAA-A-------NLAMLLT 88 (459)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grk-~~l~~~~~~~~~~~~~~~~~-~-------~~~~l~~ 88 (459)
.+.+|+++...|.+.....+..++..|+.|.++| |+||| +.++.+..+.+++.+++... + ....+.+
T Consensus 29 ~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~ 108 (428)
T PF13347_consen 29 TDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFV 108 (428)
T ss_pred HHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHH
Confidence 4456999999999999999999999999999999 89965 56667888888888887765 4 2345677
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhccC-ccchhHHHHHHHHHHHHHHHHHHHHhhhccc--cc--c-chhHHHHHhhHHHHH
Q 012646 89 GRILLGVGIGFGNQAVPLYLSEMAP-THLRGGLNMMFQLATTLGIFTANMINYGTQK--LE--T-WGWRLSLGLAAAPAL 162 (459)
Q Consensus 89 ~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~--~~--~-~gwr~~f~~~~~~~~ 162 (459)
..++..++.......-.++..|..+ +++|.+..+.-..+..+|.++...+...... .+ . .+|++..++.+++.+
T Consensus 109 ~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~ 188 (428)
T PF13347_consen 109 FYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGL 188 (428)
T ss_pred HHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHH
Confidence 7777899999998899999999997 5789999999988888888655544221111 11 1 279999999888888
Q ss_pred HHHHhh-hccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHH
Q 012646 163 MMTVGG-ILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPM 241 (459)
Q Consensus 163 ~~~~~~-~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (459)
+..+.. +..+|.++ + .++++++.+.++.+++.++++..+.......+
T Consensus 189 v~~~i~~~~~ke~~~------~------------------------~~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~-- 236 (428)
T PF13347_consen 189 VFFLITFFFVKERSV------E------------------------VTEQEKKISLRDSLRSLFRNRPFRILLLAFFL-- 236 (428)
T ss_pred HHhhhhhheeeeccc------c------------------------ccccccccccccchhhhcccchHHHHHHHHHH--
Confidence 776655 44677210 0 00111122234455666666554433333333
Q ss_pred hhhhcchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhh
Q 012646 242 FQILTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGL 320 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
............+++.+. .|.+ ...+.......++.+++.++.++++||+|+|+.+..+..+..++.+.+.+..
T Consensus 237 --~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~-- 311 (428)
T PF13347_consen 237 --QWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG-- 311 (428)
T ss_pred --HHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH--
Confidence 233334444455666655 4544 5567777788899999999999999999999999999998888877766652
Q ss_pred hcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCc-------cccchhhHHHHHHHHHHHHHHHHHHHHH
Q 012646 321 KFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPL-------ETRSAGQSITVAVNLFFTFVIAQIFLTL 393 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 393 (459)
..+.+...+...+.+.+.+... ...+++.+|..+. +..|...|+.+....++..+++.+.+.+
T Consensus 312 ---------~~~~~~~~i~~~l~gi~~~~~~-~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 312 ---------PGSPWLVLILFILAGIGYGAFF-VIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred ---------hhhHHHHHHHHHHhHhhhcccc-cccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 1345555666666666666444 5557888888863 3468889999999999999999999988
Q ss_pred Hhhch
Q 012646 394 LCSFK 398 (459)
Q Consensus 394 ~~~~~ 398 (459)
.+..|
T Consensus 382 l~~~G 386 (428)
T PF13347_consen 382 LALVG 386 (428)
T ss_pred HHHhC
Confidence 77654
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4e-22 Score=164.47 Aligned_cols=366 Identities=13% Similarity=0.084 Sum_probs=225.7
Q ss_pred cccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhh-cCcchhhhHHHHHHHHHHHHHH---HHhhHHHHHHHHHH
Q 012646 17 KHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRD-YGRRASIICGGISFLLGAALNA---AAANLAMLLTGRIL 92 (459)
Q Consensus 17 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l 92 (459)
...+-+.|.+++.++..++.+.|.....+-++++|++.|| +|-|..-++-++...++.++.+ ..+.+|.+.++|++
T Consensus 66 lq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~ 145 (459)
T KOG4686|consen 66 LQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFL 145 (459)
T ss_pred hhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhee
Confidence 3445567788899999999999999999999999999997 6888766666666666766654 46899999999999
Q ss_pred hhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhcc-
Q 012646 93 LGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILL- 171 (459)
Q Consensus 93 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~- 171 (459)
.|+|.-....+-..+..-|+..+|.+.++|+.....-+|..+-..+ .....+..+ -++-...-+.+.+.+.+-.
T Consensus 146 FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~l--m~~ly~~~~---~~~~~~ghT~LG~~l~~~~~ 220 (459)
T KOG4686|consen 146 FGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLL--MPFLYDTMG---RMFPGVGHTLLGLWLCFEVK 220 (459)
T ss_pred eccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeee--cHHHHHHHH---HhcccchHHHHHHHHHHHHH
Confidence 9999888888889999999999999999999988888876554333 111111100 0000000000000000000
Q ss_pred --CCChhhHHhhC-CHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcch
Q 012646 172 --PETPNSLIERG-KKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGI 248 (459)
Q Consensus 172 --~es~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (459)
..+-.-....+ .++.+++.+.+ ++....+.....+. ....+-++......++.....
T Consensus 221 tc~~slical~lg~~D~rAerilh~-----------------e~g~~Ge~pkLtdv---~~f~ppfw~~~iicv~yyva~ 280 (459)
T KOG4686|consen 221 TCKQSLICALSLGLSDDRAERILHL-----------------EEGFLGEEPKLTDV---NTFYPPFWVLVIICVLYYVAW 280 (459)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHhh-----------------hcCcccCCcccccc---cccCccHHHHHHHHHHHHHHH
Confidence 00000000000 00111111110 00000001111111 111222333344444444455
Q ss_pred HHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCcc
Q 012646 249 NSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQE 327 (459)
Q Consensus 249 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (459)
..+....|.++++ +|+|+..++.+.+.......+.+.+.|.++||+|++...+.+.....+..=....+.
T Consensus 281 fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--------- 351 (459)
T KOG4686|consen 281 FPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--------- 351 (459)
T ss_pred HHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh---------
Confidence 6666677777765 999999999999988899999999999999999998777665555444433222221
Q ss_pred ccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhch-h---HHHH
Q 012646 328 LSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFK-F---GIFL 403 (459)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~---~~~~ 403 (459)
.+.+...+.+.+..+...... .|..++.+.|++..|++.|.++.+.++|-.+.|.+.|.+.|+.+ + ..++
T Consensus 352 -----~lsPy~~m~~lGLsysllAcs-lWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ff 425 (459)
T KOG4686|consen 352 -----FLSPYTSMTFLGLSYSLLACS-LWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFF 425 (459)
T ss_pred -----hccHHHHHHHHhhhHHHHHHH-HhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHH
Confidence 112233344444444433222 26667788999999999999999999999999999999998876 2 3444
Q ss_pred HHHHHHHHHHHHHHhccCC
Q 012646 404 FFAGWVTIMTIFVYFFLPE 422 (459)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~ 422 (459)
.......+..+.+.+.+.+
T Consensus 426 l~~~~~aL~svgil~~~N~ 444 (459)
T KOG4686|consen 426 LIIGLMALTSVGILFYLNK 444 (459)
T ss_pred HHHHHHHHHHHHHHhheec
Confidence 4444444444444444433
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-19 Score=166.98 Aligned_cols=357 Identities=13% Similarity=0.071 Sum_probs=205.5
Q ss_pred cCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhc-CcchhhhHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhhhh
Q 012646 21 ENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDY-GRRASIICGGISFLLGAALNAAAA-NLAMLLTGRILLGVGIG 98 (459)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grk~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~ 98 (459)
..+++|+++.+.+.+.+.+.....++++++|+++||+ ||||+++++.++..++.++++..+ +...+.+...+.++|.|
T Consensus 36 L~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G 115 (493)
T PRK15462 36 LTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYG 115 (493)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc
Confidence 3456899999999999999999999999999999999 999999999999999988776543 22334444445556667
Q ss_pred hhhhhhhhhhhhccCcc--chhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccCCChh
Q 012646 99 FGNQAVPLYLSEMAPTH--LRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPN 176 (459)
Q Consensus 99 ~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~es~~ 176 (459)
...+...++++|.+|++ +|...+++...+.++|..++|.+ .....+..|||+.|.+.++..++.++..++..+...
T Consensus 116 ~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l--~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~ 193 (493)
T PRK15462 116 LFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIA--CGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFT 193 (493)
T ss_pred cccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHH--HHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 67777788999999875 68999999999999999999999 555566679999999876654444433322211100
Q ss_pred hH-H-hhCCHHHHHHHHHHHhC----Cch----hh-HHHH-HHHHH-------H------HhhccCCcchHHHhccCchh
Q 012646 177 SL-I-ERGKKVEGRRVLEKIRG----TKE----VN-AEYQ-DMVDA-------S------ELANSIKHPFRNILERRNRP 231 (459)
Q Consensus 177 ~l-~-~~~~~~~~~~~~~~~~~----~~~----~~-~~~~-~~~~~-------~------~~~~~~~~~~~~~~~~~~~~ 231 (459)
.. . +++..++ ++....... .-- .. .... +.... . ....+ + .+...++
T Consensus 194 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~er~ 265 (493)
T PRK15462 194 HTRGVNKKVLRA-TNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRK-A------ENQKQRK 265 (493)
T ss_pred cCCCCCCCCchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c------CCHHHHh
Confidence 00 0 0000000 000000000 000 00 0000 00000 0 00000 0 0000111
Q ss_pred HHHHH--HHHHHhhhhcchHHHHHhHHHHHHh------cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCC--ch---
Q 012646 232 QLVMA--IFMPMFQILTGINSILFYAPVLFQS------MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGR--RA--- 298 (459)
Q Consensus 232 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~--~~--- 298 (459)
++... +.+.....+..+.-...-...+.++ .|++ -...+..++..+..++.+++..++-.|..| |.
T Consensus 266 r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~ 344 (493)
T PRK15462 266 ELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRI 344 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 11111 1111111111111111122222222 2333 235667788888888888777766556532 21
Q ss_pred --hhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHH
Q 012646 299 --LLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITV 376 (459)
Q Consensus 299 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 376 (459)
-...+.++.+++.+.+....... .. ....+.+ .++...++......+..|+..+.++++.|++.+|..+|+..
T Consensus 345 ~~Kfa~g~~~~g~~f~~l~~~~~~~--~~--~~~~s~~-wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~ 419 (493)
T PRK15462 345 WGKFALGLGLMSAGFCILTLSARWS--AM--YGHSSLP-LMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYM 419 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc--CC--CCCcCHH-HHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHH
Confidence 25566777777766665433111 11 0112233 34444444455566788998999999999999999999986
Q ss_pred HHH-HHHHHHHHHHHHHH
Q 012646 377 AVN-LFFTFVIAQIFLTL 393 (459)
Q Consensus 377 ~~~-~~g~~~~~~~~~~~ 393 (459)
... .++..++..+.+..
T Consensus 420 l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 420 LLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 643 56776666666554
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-19 Score=159.55 Aligned_cols=278 Identities=12% Similarity=0.070 Sum_probs=189.9
Q ss_pred HHHhhHHHHHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccc-----------
Q 012646 78 AAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLE----------- 146 (459)
Q Consensus 78 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~----------- 146 (459)
+...+|+.+++.-++.|.|.+...+..+.++++..+++++++.+++.+..+++|..++|.++.......
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 356789999999999999999999999999999999999999999999999999999999965433211
Q ss_pred ---cchhHHHHHhhHHHHHHHHHhhhc--cCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcch
Q 012646 147 ---TWGWRLSLGLAAAPALMMTVGGIL--LPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPF 221 (459)
Q Consensus 147 ---~~gwr~~f~~~~~~~~~~~~~~~~--~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (459)
..+||++|++.+...++..+.+.+ +||.++ ++.++ ..+ + +....
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~~~~-----------------------~~~--~-~~~~~ 133 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----ADVAR-----------------------VSS--G-DTTQK 133 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----ccccc-----------------------ccc--c-cccch
Confidence 147999999776665555444433 454320 00000 000 0 00011
Q ss_pred HHHhccCchhHHHHHHHHHHhhhhcchHHHHHhHHHHHHh---cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCch
Q 012646 222 RNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQS---MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRA 298 (459)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 298 (459)
++.+++ +..+...+..++..........|.+.|+++ +|+++.+.+........+.++|+++.+++.||+++|+
T Consensus 134 ~~~~~~----~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~ 209 (310)
T TIGR01272 134 TSAFQF----THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR 209 (310)
T ss_pred hhHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 122222 223445555666666677888888888864 5899999999999999999999999999999999998
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHH
Q 012646 299 LLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAV 378 (459)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 378 (459)
.+..+..+..++..+.... + .........+.+.+.+..++. ..+...+..|++ .+++.++. ..
T Consensus 210 ~l~~~~~l~~~~~~l~~~~-------------~-~~~~~~~~~l~g~~~s~i~P~-~~s~a~~~~~~~-~~~asai~-~~ 272 (310)
T TIGR01272 210 YLAFNAFLAVLLSIGAALT-------------H-GYVAMWFVLALGLFNSIMFPT-IFSLALNALGRH-TSQGSGIL-CL 272 (310)
T ss_pred HHHHHHHHHHHHHHHHHHc-------------C-CHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhh-hhhhHHHH-HH
Confidence 8877766655554333221 1 111223334455555544443 345656767643 55666764 67
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 012646 379 NLFFTFVIAQIFLTLLCSFKFGIFLFFAG 407 (459)
Q Consensus 379 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (459)
+.+|+.+.|.+.|.+.|..+....+.+..
T Consensus 273 ~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 273 AIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred HHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 88999999999999999887655444333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.7e-19 Score=154.80 Aligned_cols=354 Identities=12% Similarity=0.052 Sum_probs=241.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcc-hhhhHHHHHHHHHHHHHHHHhh---HHHHHHHHHHhhhhhhhhhhh
Q 012646 28 DNQGLAAFTSSLYLAGLVASFVASPVTRDYGRR-ASIICGGISFLLGAALNAAAAN---LAMLLTGRILLGVGIGFGNQA 103 (459)
Q Consensus 28 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk-~~l~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~~~~~~~ 103 (459)
+.+..+...++..+..++-+|+.|.++|+.|+| +.+-....+..+..++..++++ ++..++..++..++.......
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 456688889999999999999999999999965 4555566666666777777655 445556778888998999999
Q ss_pred hhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccc----------------cccchhHHHHHhhHHHHHHHH-H
Q 012646 104 VPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQK----------------LETWGWRLSLGLAAAPALMMT-V 166 (459)
Q Consensus 104 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~----------------~~~~gwr~~f~~~~~~~~~~~-~ 166 (459)
-.+++.+..++++-++..++-.....+|..+.-........ .+...-|..+.+.++.-++.. .
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 99999999999888877776666566665554433211110 123457888888887776664 4
Q ss_pred hhhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhc
Q 012646 167 GGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILT 246 (459)
Q Consensus 167 ~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (459)
+++.+++.++-. ..+. +.. ...-++.++++++..+++. +..+++..+...-
T Consensus 216 m~~~v~~~~~~~-----~~~~----------~~l----------~~g~k~L~~t~k~i~~~~~----i~~FLiA~~~~~D 266 (438)
T COG2270 216 MILNVHDAEKIS-----SPPP----------TAL----------RNGFKELKSTFKEIRGRKN----LVLFLIARFFYID 266 (438)
T ss_pred HHhccccccccc-----ccch----------HHH----------HHHHHHHHHHHHHHhcccc----hHHHHHHHHHHHh
Confidence 556666654200 0000 000 0011112334445554443 4444555555555
Q ss_pred chHHHHHhHHHHHH-hcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCC
Q 012646 247 GINSILFYAPVLFQ-SMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPN 325 (459)
Q Consensus 247 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (459)
+.+....+...+.. ++|++..+.........+..++|+++.|++.||+|.|+++..+.+...+.++.....-
T Consensus 267 Gv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~------- 339 (438)
T COG2270 267 GVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE------- 339 (438)
T ss_pred hHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc-------
Confidence 66777777777766 6999999999999999999999999999999999999988888777766665554431
Q ss_pred ccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchh-HHHHH
Q 012646 326 QELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKF-GIFLF 404 (459)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~ 404 (459)
..........+.+.+.+ ......-++..+..|+++.++.+|+++..++..+..+|.+.+.+.+..+. ...+.
T Consensus 340 ------~~~~f~i~gll~g~s~G-~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~ 412 (438)
T COG2270 340 ------GELDFWILGLLVGTSLG-GAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVL 412 (438)
T ss_pred ------ccHHHHHHHHHHHHhcc-hHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHH
Confidence 12222333333333433 33445578889999999999999999999999999999999999887764 33344
Q ss_pred HHHHHHHHHHHHHhccCCCC
Q 012646 405 FAGWVTIMTIFVYFFLPETK 424 (459)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~ 424 (459)
...++..++++.+..+|..+
T Consensus 413 ~i~vll~iGl~~L~~v~~~~ 432 (438)
T COG2270 413 SIIVLLLIGLLLLLRVKVPG 432 (438)
T ss_pred HHHHHHHhhHhhEEeecCCC
Confidence 44445556666666666543
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.4e-20 Score=164.65 Aligned_cols=356 Identities=15% Similarity=0.130 Sum_probs=212.6
Q ss_pred CCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHH--HHHHHH-HHHHh----hHH-HHHHHHHHh
Q 012646 22 NNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISF--LLGAAL-NAAAA----NLA-MLLTGRILL 93 (459)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~--~~~~~~-~~~~~----~~~-~l~~~r~l~ 93 (459)
+++.|+|.+++|.+.++..+...+.+++.|.++||+|.||-++...... ..+.+. ..+.| |.+ ..+++-+..
T Consensus 35 ~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l 114 (412)
T PF01306_consen 35 TQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYL 114 (412)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTT
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446999999999999999999999999999999999777655433222 222222 22222 222 223333344
Q ss_pred hhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhcc-C
Q 012646 94 GVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILL-P 172 (459)
Q Consensus 94 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~-~ 172 (459)
|+...+..|+..+++.++. ++.+.-.|-.-...++|.+++..+++ ...+ .+-+..||+....+++..++.++. |
T Consensus 115 ~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G--~L~~-i~p~~~fwi~s~~~~il~lll~~~~~ 189 (412)
T PF01306_consen 115 GLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAG--ILFN-INPNIIFWIASAAAIILLLLLLLLKP 189 (412)
T ss_dssp TTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHSS--
T ss_pred HHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhh--eeee-eCccHHHHHHHHHHHHHHHHHHHcCC
Confidence 4445555566666655554 22334455555666777777776632 2222 245678888776666655554443 3
Q ss_pred CChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHH
Q 012646 173 ETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSIL 252 (459)
Q Consensus 173 es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (459)
+.++....++. +..++++.+.++..+..+.++.+. +.+........+..+.
T Consensus 190 ~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~l~k~~~fw~-~~l~v~g~~~~Y~vfd 240 (412)
T PF01306_consen 190 DVPPQAEVADA----------------------------LGAKKDKVSLKDVLSLFKMRNFWF-FVLFVIGVAAIYDVFD 240 (412)
T ss_dssp -SSSSS-SSTT----------------------------SSS------HHHHHHHTTSHHHHH-HHHHHHHHHHHHHHHH
T ss_pred cCchhhhhhcc----------------------------cccCCCCCcHHHHHHHhcchhHHH-HHHHHHHHHHHHHHHH
Confidence 33211000000 001111223344333333333333 3333333333445555
Q ss_pred HhHHHHHHhc----CCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccc
Q 012646 253 FYAPVLFQSM----GFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQEL 328 (459)
Q Consensus 253 ~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (459)
...+.+...+ +.+....|+..+...+.+++.-.+.+++.+|+|.|+.++++..++.+=.....+.
T Consensus 241 qqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~----------- 309 (412)
T PF01306_consen 241 QQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA----------- 309 (412)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh-----------
Confidence 4455555542 3334567888888889999999999999999999999999988888887777654
Q ss_pred cchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHH-HHHHHHHHHHHHHHHHHHHhhchhH-HHHHHH
Q 012646 329 SKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSIT-VAVNLFFTFVIAQIFLTLLCSFKFG-IFLFFA 406 (459)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~ 406 (459)
++++.....-.+-+.-+.....+. .-++++.+|++..++...+. +....++..+.+.+.|.++|+.|+. ++++.+
T Consensus 310 --~~~~~i~~~klLH~~e~~l~lva~-fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg 386 (412)
T PF01306_consen 310 --TNPWVISLIKLLHALEFPLLLVAA-FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMG 386 (412)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cchHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHH
Confidence 335556666666666666555554 57788999999999999885 5778899999999999999999975 555666
Q ss_pred HHHHHHHHHHHhccCCCCC
Q 012646 407 GWVTIMTIFVYFFLPETKG 425 (459)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~ 425 (459)
.+.....++..+.+++.++
T Consensus 387 ~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 387 LIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHheeeecCCCc
Confidence 6555566666666665443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-17 Score=147.18 Aligned_cols=361 Identities=13% Similarity=0.103 Sum_probs=233.6
Q ss_pred CcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHH------hhHH--HHHHHHHHhh
Q 012646 23 NYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAA------ANLA--MLLTGRILLG 94 (459)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~------~~~~--~l~~~r~l~G 94 (459)
..++ +....-|+..+|.+.+....+++-++.|++|-|..++++..+..+|..+-..+ +.++ ....+..+.+
T Consensus 73 ~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa 151 (480)
T KOG2563|consen 73 SFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAA 151 (480)
T ss_pred HHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHH
Confidence 3345 66677899999999999999999999999999999999999999999987665 3344 6778888998
Q ss_pred hhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccc----cccchhHH--HHHhhHHHHHHHHHhh
Q 012646 95 VGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQK----LETWGWRL--SLGLAAAPALMMTVGG 168 (459)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~----~~~~gwr~--~f~~~~~~~~~~~~~~ 168 (459)
.+.-...........-|++++||..+..+-..+..+|.+++.++.-.... .++..|.. .|+....++.+.+++.
T Consensus 152 ~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~ 231 (480)
T KOG2563|consen 152 AAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALV 231 (480)
T ss_pred HhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777777888999999999999998888888888887776432222 22456655 3544444443333333
Q ss_pred -hccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcc
Q 012646 169 -ILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTG 247 (459)
Q Consensus 169 -~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (459)
+..+|.|+.-.+ .. +....+.+...+.++.++++. +....+........
T Consensus 232 ~~~~~~~P~tPps-----------------------~s---~~~~~~~~f~~si~~~~~n~~----F~il~~~ygi~~g~ 281 (480)
T KOG2563|consen 232 LFVFTKKPPTPPS-----------------------AS---QAALQDASFPKSIKSCFKNRQ----FIILAICYGIGLGL 281 (480)
T ss_pred HHhcCCCCCCCCc-----------------------hh---HhhhhcCcHHHHHHHHHcCcc----HHHHHHHHhhhHHH
Confidence 223333311000 00 000001112344556666655 33333333333334
Q ss_pred hHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhh-hhhhHHHHHHHHHHHHHHhhhcCCCc
Q 012646 248 INSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALL-ISGGIQMITCQVIVSIILGLKFGPNQ 326 (459)
Q Consensus 248 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (459)
++...+.+...+...|++...+|+......++++++..+.|.+.||.+.-+.. .+......++...+.... .
T Consensus 282 F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t-~------ 354 (480)
T KOG2563|consen 282 FNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCT-L------ 354 (480)
T ss_pred HHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh-c------
Confidence 44444444434444678778899999999999999999999999998765443 333333333322211111 0
Q ss_pred cccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhch----hHHH
Q 012646 327 ELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFK----FGIF 402 (459)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~ 402 (459)
.....+ .+...+.....++.+..|+..-+..|..-|..-++..|+.+..+.+.+.+-..+.+...+..+ +...
T Consensus 355 --~~~~~v-iv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~ 431 (480)
T KOG2563|consen 355 --FLGDSV-IVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPA 431 (480)
T ss_pred --cCCceE-ehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccc
Confidence 111122 233333334444556777877888888767778899999999999999999999998887766 4444
Q ss_pred HHHHHHHHHHHHHHHhccCCCC
Q 012646 403 LFFAGWVTIMTIFVYFFLPETK 424 (459)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~ 424 (459)
-+......+....+..+.++..
T Consensus 432 ~i~~~~~~~l~~~lva~~r~~y 453 (480)
T KOG2563|consen 432 NIFLTVSALLGAILVAFFRPDY 453 (480)
T ss_pred hhHhHHHHHHHHHHHhhhhhhH
Confidence 4455555555555555555443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.3e-17 Score=146.12 Aligned_cols=359 Identities=18% Similarity=0.119 Sum_probs=226.3
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhc-CcchhhhHHHHHHHHHHHHHHHHh--hHHHHHHHHHHhhhhhhhhh
Q 012646 25 CKYDNQGLAAFTSSLYLAGLVASFVASPVTRDY-GRRASIICGGISFLLGAALNAAAA--NLAMLLTGRILLGVGIGFGN 101 (459)
Q Consensus 25 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grk~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~ 101 (459)
+|+|++++.-+.+.|..-.-+..+++|+++||+ |+|+.+..|.+++.+|.++.+.++ +...++++-.+.++|.|..-
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 789999999999999999999999999999996 999999999999999999999884 78899999999999999999
Q ss_pred hhhhhhhhhccCcc--chhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccCC------
Q 012646 102 QAVPLYLSEMAPTH--LRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPE------ 173 (459)
Q Consensus 102 ~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e------ 173 (459)
+...+++.|.+|++ +|-..++++.++.++|..++|.+ .....++.||+..|-..++-..+.++..+..+.
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i--~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~ 213 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPII--TGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIG 213 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHH--HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCC
Confidence 99999999999864 46788999999999999999999 666677789999999888777666655544321
Q ss_pred ---ChhhHHhhCCHHHHHHHHHHH--------hCCchhhHHHHH------HHHHHHhhccCCcchHHHhccCchhHHHHH
Q 012646 174 ---TPNSLIERGKKVEGRRVLEKI--------RGTKEVNAEYQD------MVDASELANSIKHPFRNILERRNRPQLVMA 236 (459)
Q Consensus 174 ---s~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (459)
.|..+..+............. ...+..+..... ..-..+....++.. .+..|....-++++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~er~r~~~~~~Lfl~ 292 (498)
T COG3104 214 GVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF-DERRRLLAAIPLFLF 292 (498)
T ss_pred CCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-HHHHHHHHHHHHHHH
Confidence 111111111100000000000 000000000000 00000000011100 111111111122222
Q ss_pred HHHHHhhhhcchHHHHHhHHHHHHh--cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCc--h-----hhhhhhHHH
Q 012646 237 IFMPMFQILTGINSILFYAPVLFQS--MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRR--A-----LLISGGIQM 307 (459)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~-----~~~~~~~~~ 307 (459)
..+.+..+--....+..|.....++ +|++ -...+..+...+..++..++..++..|.+++ . -+..+..++
T Consensus 293 ~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~-vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~ 371 (498)
T COG3104 293 AVIFWALYEQMGSSLNLYADRNVNRQIFGFE-VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILA 371 (498)
T ss_pred HHHHHHHHHhccchHHHHHHHhhccccccee-cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHH
Confidence 2222333333334444555444433 3433 3456778888888888888888877774332 2 233344444
Q ss_pred HHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHH
Q 012646 308 ITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIA 387 (459)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 387 (459)
+.+.+++.......-.+ +...+..+.+...+......++..|+..+++....|+...+..+++.......+..++.
T Consensus 372 g~~fl~l~~~~~~~~~~----~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g 447 (498)
T COG3104 372 GLGFLILLLAGIWFGGP----SGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGG 447 (498)
T ss_pred HHHHHHHHHHHHhhcCC----CCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444444331111111 22334445555555566667788888889999999999999999998888888888887
Q ss_pred HHHH
Q 012646 388 QIFL 391 (459)
Q Consensus 388 ~~~~ 391 (459)
.+.+
T Consensus 448 ~va~ 451 (498)
T COG3104 448 QVAG 451 (498)
T ss_pred eecc
Confidence 7776
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=151.46 Aligned_cols=370 Identities=14% Similarity=0.099 Sum_probs=248.3
Q ss_pred hhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHh----------
Q 012646 12 VYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAA---------- 81 (459)
Q Consensus 12 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~---------- 81 (459)
.|.......+++.|+++.++.|++.+.+=++..+...+..+..-|.-|-+.+-+|+++++++++++++-+
T Consensus 114 ~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~ 193 (735)
T KOG3626|consen 114 GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYEL 193 (735)
T ss_pred hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhh
Confidence 5667777788899999999999999999999999999999999999999999999999999999987630
Q ss_pred -h----------------------------------------H-HHHHHHHHHhhhhhhhhhhhhhhhhhhccCccchhH
Q 012646 82 -N----------------------------------------L-AMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGG 119 (459)
Q Consensus 82 -~----------------------------------------~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 119 (459)
+ + ..++++.++.|+|....++...+|+-|...+++-+.
T Consensus 194 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~Spl 273 (735)
T KOG3626|consen 194 EVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPL 273 (735)
T ss_pred hhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcH
Confidence 0 2 267778999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccc------c-------c----chhHHHHHhhHHHHHHHHHhhhccCCChhhHHhhC
Q 012646 120 LNMMFQLATTLGIFTANMINYGTQKL------E-------T----WGWRLSLGLAAAPALMMTVGGILLPETPNSLIERG 182 (459)
Q Consensus 120 ~~~~~~~~~~~G~~~~~~l~~~~~~~------~-------~----~gwr~~f~~~~~~~~~~~~~~~~~~es~~~l~~~~ 182 (459)
.+|+......+|.++|-+++...... . + .-|..-|++.+.+.++..+.++++|+..+.-.++
T Consensus 274 Ylgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~- 352 (735)
T KOG3626|consen 274 YLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKR- 352 (735)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcccccc-
Confidence 99999999999999998885432211 0 0 1377778888888888877777887654211110
Q ss_pred CHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCc---chHHHhccCchhHHHHHHHHHHhhhhcchHHHHHhHHHHH
Q 012646 183 KKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKH---PFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLF 259 (459)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (459)
.+ .++.+..+..+. ..+......+ .+...+++....++++...+...+....+..+.+|+|-|+
T Consensus 353 --~~----~~~~~~~k~~~~-------~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyL 419 (735)
T KOG3626|consen 353 --KR----ARDLHVLKTESG-------GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYL 419 (735)
T ss_pred --ch----hhhhcccccccc-------cccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHH
Confidence 00 000000000000 0000001111 1222223333444577777777778888889999999998
Q ss_pred Hh-cCCCCchhHHHHHHHHH-HHHHHhHHHHHHHhhcCC--chhhhhhhHHHHHHHHHHHHHHhhh--------------
Q 012646 260 QS-MGFKGDASLYSSAMTGA-VLASSTLISIATVDKLGR--RALLISGGIQMITCQVIVSIILGLK-------------- 321 (459)
Q Consensus 260 ~~-~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 321 (459)
++ +|.+...+..+.....+ +..+|.+++|+++.|+.- |....+..+...+..+.........
T Consensus 420 E~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~~~~y~ 499 (735)
T KOG3626|consen 420 ETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCESSPVAGVTNSYE 499 (735)
T ss_pred HHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCCCCcccceecCCC
Confidence 86 99999998887755554 456777889999998753 4444444444443333322111000
Q ss_pred --------------------------------------------------------------cCC-----Cc-------c
Q 012646 322 --------------------------------------------------------------FGP-----NQ-------E 327 (459)
Q Consensus 322 --------------------------------------------------------------~~~-----~~-------~ 327 (459)
..+ .. .
T Consensus 500 ~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~ 579 (735)
T KOG3626|consen 500 GSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCP 579 (735)
T ss_pred CCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccccccCCCceeecCCCC
Confidence 000 00 0
Q ss_pred cc-chhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHH-HHHHHHHHHHHHHHHhh
Q 012646 328 LS-KSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVN-LFFTFVIAQIFLTLLCS 396 (459)
Q Consensus 328 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~g~~~~~~~~~~~~~~ 396 (459)
.+ ......+++..++..+..+.+..|. +.++-..+|+|.|+.++|+..++. -+|.+-+|.++|++.|.
T Consensus 580 ~~c~~~~~~Fl~~~~~~sf~~~~~~~p~-~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~ 649 (735)
T KOG3626|consen 580 NDCCRQFLIFLALFAIGSFIGALGAVPG-MLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDT 649 (735)
T ss_pred CCcchhhHHHHHHHHHHHHHHHhccCcc-eEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhh
Confidence 00 1112223333333333344344444 566679999999999999998775 56888899999999984
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.5e-15 Score=129.95 Aligned_cols=351 Identities=13% Similarity=0.081 Sum_probs=225.5
Q ss_pred CcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcC-----cchh-hhHHHHHHHHHHHHHHHH-----h-------hH-
Q 012646 23 NYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYG-----RRAS-IICGGISFLLGAALNAAA-----A-------NL- 83 (459)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-----rk~~-l~~~~~~~~~~~~~~~~~-----~-------~~- 83 (459)
.|++++..-.+...+..++... ..+.+|+.||+.+ ||.- +..|.++...+..+..++ . +.
T Consensus 8 vEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~ 86 (403)
T PF03209_consen 8 VELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW 86 (403)
T ss_pred HHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence 4568888888888888877655 5899999999998 7754 445666666666555543 2 12
Q ss_pred ---HHHHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccch-hHHHHHh--h
Q 012646 84 ---AMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWG-WRLSLGL--A 157 (459)
Q Consensus 84 ---~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~g-wr~~f~~--~ 157 (459)
....+.-.+.|+|.+...+...++++|..|+++|+++.++.....-+|.+++..+ .....+.++ -|..-.+ .
T Consensus 87 ~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~--~g~lL~~~s~~rL~~v~~~~ 164 (403)
T PF03209_consen 87 LGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIV--FGRLLDPFSPERLIQVIQGV 164 (403)
T ss_pred HHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHH--HHHHccccCHHHHHHHHHHH
Confidence 2344556889999999999999999999999999999999999999999999988 443333332 2222222 2
Q ss_pred HHHHHHHHHhhhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHH
Q 012646 158 AAPALMMTVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAI 237 (459)
Q Consensus 158 ~~~~~~~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (459)
++..++..++..+=.|.+..... ...++++......++++..++..++++...
T Consensus 165 a~i~~~l~~ia~wg~E~r~~~~~---------------------------~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl 217 (403)
T PF03209_consen 165 ALIALLLNLIALWGQEPRRSRRA---------------------------AAAERPRPPFREAWRQVWASPQARRFFVFL 217 (403)
T ss_pred HHHHHHHHHHHHHhcccCCcccc---------------------------cCCCCCCccHHHHHHHHHhCCChhHHHHHH
Confidence 22222222222221222100000 000011111133455566666666666655
Q ss_pred HHHHhhhhcchHHHHHh-HHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHh-hcCCchhhhhhhHHHHHHHHHHH
Q 012646 238 FMPMFQILTGINSILFY-APVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVD-KLGRRALLISGGIQMITCQVIVS 315 (459)
Q Consensus 238 ~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~~~~ 315 (459)
.+..+.. ..-... -|+=-+.+|++..+.+.++...+.+.++|-...+++.. |.++++...+++....+++.++.
T Consensus 218 ~l~t~a~----~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii 293 (403)
T PF03209_consen 218 FLGTLAF----FMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALII 293 (403)
T ss_pred HHHHHHH----HhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH
Confidence 5544422 222222 23334558999999999999999999999998888766 67777777777777777766655
Q ss_pred HHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012646 316 IILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLC 395 (459)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 395 (459)
... ...+.+.......+++.+.+...... .+.+.+..+++..|+.+|.....+.+...++..+.|.+.|
T Consensus 294 ~a~----------~~~~~~~~~~~~~l~G~g~G~f~vga-ls~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D 362 (403)
T PF03209_consen 294 LAG----------PLGSPWLFRPGVFLLGLGNGLFTVGA-LSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD 362 (403)
T ss_pred HHH----------hcccchHHHHHHHHHHHhhhHHHHHH-HHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 12334555555666666666544333 2444588888899999999999999999999999988877
Q ss_pred hc----------hhHHHHHHHHHHHHHHHHHHh
Q 012646 396 SF----------KFGIFLFFAGWVTIMTIFVYF 418 (459)
Q Consensus 396 ~~----------~~~~~~~~~~~~~~~~~~~~~ 418 (459)
-. +|...+..-++..+.++++..
T Consensus 363 ~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 363 LVRALFGNSPALAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred HHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 32 244455555555555544433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.6e-17 Score=147.29 Aligned_cols=366 Identities=16% Similarity=0.152 Sum_probs=214.9
Q ss_pred CcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCc-chhhhHHHHHHHHHHHHH-HHH---h-hHHHHHHHHHHhhhh
Q 012646 23 NYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGR-RASIICGGISFLLGAALN-AAA---A-NLAMLLTGRILLGVG 96 (459)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-k~~l~~~~~~~~~~~~~~-~~~---~-~~~~l~~~r~l~G~~ 96 (459)
-|.+.+.+..|++.++..++.+++++..|..+.|.++ |+-++.|.++..+|+++. ++. + .-+.++++|++.|+|
T Consensus 64 lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg 143 (488)
T KOG2325|consen 64 LDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVG 143 (488)
T ss_pred cCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcC
Confidence 3678889999999999999999999999999999997 888999999999999988 333 3 678999999999999
Q ss_pred hhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccch-----------hHHHHHhhHHHHHHHH
Q 012646 97 IGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWG-----------WRLSLGLAAAPALMMT 165 (459)
Q Consensus 97 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~g-----------wr~~f~~~~~~~~~~~ 165 (459)
.+. ....-+|+++....++|.++++....+..+|.++||.+..........| +..+-|+.++..++.+
T Consensus 144 ~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~ 222 (488)
T KOG2325|consen 144 VGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYI 222 (488)
T ss_pred ccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHH
Confidence 764 4678999999998999999999999988999998888753322222111 2345677777777776
Q ss_pred Hhh-hccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhh
Q 012646 166 VGG-ILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQI 244 (459)
Q Consensus 166 ~~~-~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (459)
++. .+++|.++...+++.+.+ ++.+.+.+..+ ..+..+...+.+.+..+..
T Consensus 223 v~i~~~f~E~~~~~~~~~~~~~------------------~~~~~~~~~~~----------~~~~d~~~~~vc~~~~~~~ 274 (488)
T KOG2325|consen 223 VIILFFFKEVYRGIIDKKKRSV------------------EEEKSDIEKVK----------KPKLDWVAVLVCIFLRFVV 274 (488)
T ss_pred HHHHhheeecccCccccccccc------------------hhhccchhhhc----------cCChhHHHHHHHHHHHHHH
Confidence 654 457776532111110000 00000000000 0111111222222223323
Q ss_pred hcchHH-HHHhHHHHHHhcCCCCchhHHH----HHHHHHHHHHHhHHHHHHH-hhcCCchhhhhhhHHHHHHHHHHHHHH
Q 012646 245 LTGINS-ILFYAPVLFQSMGFKGDASLYS----SAMTGAVLASSTLISIATV-DKLGRRALLISGGIQMITCQVIVSIIL 318 (459)
Q Consensus 245 ~~~~~~-~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~g~l~-d~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (459)
...... -+...+.....++++.+++-.. .++.++..+.-.+...... .++.+|..+..+.+....+..+.....
T Consensus 275 ~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~ 354 (488)
T KOG2325|consen 275 NFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPW 354 (488)
T ss_pred HHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeec
Confidence 222233 3334455555678876654332 2222222222222222222 233445555555444333333332222
Q ss_pred hhhcCCCc--------cccchh---------hhHHHHH--HHHHHHHHhhcccccccceecccCCccccchhhHHHHHHH
Q 012646 319 GLKFGPNQ--------ELSKSF---------SILVVVV--ICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVN 379 (459)
Q Consensus 319 ~~~~~~~~--------~~~~~~---------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 379 (459)
.....+-. ...... +...... ..+++..+-....+. .+.-+|+..++.+++..++....+
T Consensus 355 ~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~-~tlySkiLgp~~q~~~qg~~~~~~ 433 (488)
T KOG2325|consen 355 GFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTAL-DTLYSKILGPRDQGTMQGVFSISG 433 (488)
T ss_pred cccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchH-HHHHHHHhCCccccceeEEEEecc
Confidence 11111100 000000 1111111 111222222112223 355579999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh
Q 012646 380 LFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYF 418 (459)
Q Consensus 380 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (459)
..+..++|.+........|+...+.+.....++...++.
T Consensus 434 s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~ 472 (488)
T KOG2325|consen 434 SIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWI 472 (488)
T ss_pred chhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888877777666666555554443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=153.23 Aligned_cols=174 Identities=16% Similarity=0.174 Sum_probs=131.9
Q ss_pred cCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHH---HHHHhhHHHHHHHHHHhhhhh
Q 012646 21 ENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAAL---NAAAANLAMLLTGRILLGVGI 97 (459)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l~G~~~ 97 (459)
.++++|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+. ...+++...++++|++.|++.
T Consensus 277 l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 356 (490)
T PRK10642 277 LSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVIL 356 (490)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 34557888888888888889999999999999999999999988877654443332 222345777888999999887
Q ss_pred hhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhcccccc-chhHHHHHhhHHHHHHHHHhhhccCCChh
Q 012646 98 GFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLET-WGWRLSLGLAAAPALMMTVGGILLPETPN 176 (459)
Q Consensus 98 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~-~gwr~~f~~~~~~~~~~~~~~~~~~es~~ 176 (459)
+........++.|.+|++.|++++++......++..++|.+. ....+. .+|+.++++..+++++..+..+++||+|+
T Consensus 357 ~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~--g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~ 434 (490)
T PRK10642 357 NCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLA--AWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETAN 434 (490)
T ss_pred HHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHH--HHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccC
Confidence 777777788899999999999999974433445556666663 222222 35787777777777777776677899999
Q ss_pred hHHhh-----CCHHHHHHHHHHHhC
Q 012646 177 SLIER-----GKKVEGRRVLEKIRG 196 (459)
Q Consensus 177 ~l~~~-----~~~~~~~~~~~~~~~ 196 (459)
|+.++ +|.+|+++.++++++
T Consensus 435 ~~~~~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 435 RPLKGATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred CCCCCccccccchhhHHHHhhcccc
Confidence 98765 888999999988874
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-15 Score=139.41 Aligned_cols=318 Identities=13% Similarity=0.129 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh--hhhhhhhhhhhhhhccCcc
Q 012646 38 SLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVG--IGFGNQAVPLYLSEMAPTH 115 (459)
Q Consensus 38 ~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~--~~~~~~~~~~~i~~~~~~~ 115 (459)
...+...+.++..|.++||+|||..+.+..+...+..+...+.. |++++ +.|+. .+.......++++|....+
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchh
Confidence 44677789999999999999999999999999888888877766 33333 44432 2456677888999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhh-hccCCChhhHHhhCCHHHHHHHHHHH
Q 012646 116 LRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGG-ILLPETPNSLIERGKKVEGRRVLEKI 194 (459)
Q Consensus 116 ~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~es~~~l~~~~~~~~~~~~~~~~ 194 (459)
+|....++....+..+..++|.+ +.......|.-.+|.+..+..++..+.. .++||+-....+. +
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~--~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~---~--------- 210 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPAL--GGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS---D--------- 210 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH--HHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccc---c---------
Confidence 99999999999999999999999 4555555677788888888888776654 5688875211110 0
Q ss_pred hCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHhHHHHHH-hcCCCCchhHHHH
Q 012646 195 RGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQ-SMGFKGDASLYSS 273 (459)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~ 273 (459)
....... .......+..+.+....+....|..+.......+..........-..+++.+ .++++..+.+.+.
T Consensus 211 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~ 283 (463)
T KOG2816|consen 211 ATLRELT-------PGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLL 283 (463)
T ss_pred ccccccC-------CCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHH
Confidence 0000000 0000000011122222221222222222332222222111111101223333 3899999999888
Q ss_pred HHHHHHHHHHhHHHH-HHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhccc
Q 012646 274 AMTGAVLASSTLISI-ATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWG 352 (459)
Q Consensus 274 ~~~~~~~~~~~~~~g-~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (459)
........++.++.. .+...++.|+....|.....+......+.. ..|....... .. .+.....
T Consensus 284 ~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~-------------~~w~~~~~~v-~~-~~~~~~~ 348 (463)
T KOG2816|consen 284 SLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT-------------ETWMMFAAGV-VV-ALAGIVF 348 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc-------------cchhhhHHHH-HH-Hhhcchh
Confidence 888888888888776 777888988888888887777777777652 1222222222 22 2222334
Q ss_pred ccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012646 353 PLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCS 396 (459)
Q Consensus 353 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 396 (459)
|...+..+...+++.+|+++++......+.+.++|.+.+.+...
T Consensus 349 pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 349 PAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred HHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 44467778888999999999999999999999999999987654
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.7e-18 Score=161.84 Aligned_cols=383 Identities=14% Similarity=0.120 Sum_probs=3.0
Q ss_pred hhhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHh-------
Q 012646 9 FHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAA------- 81 (459)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~------- 81 (459)
....|.......+++.|+++.++.|++.+.+-++..+..++..++.+|..|=|.+-.|.++++++++++++-+
T Consensus 17 ~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~ 96 (539)
T PF03137_consen 17 MVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYS 96 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCc
Confidence 3455677778888999999999999999999999999999999999998888899999999999998875420
Q ss_pred -------------------------------------------hHHHHHHHHHHhhhhhhhhhhhhhhhhhhccCccchh
Q 012646 82 -------------------------------------------NLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRG 118 (459)
Q Consensus 82 -------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~ 118 (459)
-+..+++++++.|+|....++...+|+-|..++++-+
T Consensus 97 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~sp 176 (539)
T PF03137_consen 97 YEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSP 176 (539)
T ss_dssp -------------------------------------------------------SSS----------------------
T ss_pred cccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCc
Confidence 0357888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccc----------------ccc----hhHHHHHhhHHHHHHHHHhhhccCCChhhH
Q 012646 119 GLNMMFQLATTLGIFTANMINYGTQKL----------------ETW----GWRLSLGLAAAPALMMTVGGILLPETPNSL 178 (459)
Q Consensus 119 ~~~~~~~~~~~~G~~~~~~l~~~~~~~----------------~~~----gwr~~f~~~~~~~~~~~~~~~~~~es~~~l 178 (459)
..+|+..+...+|.++|-+++...... ++- .|..-|++.+...++..+..+++|+..+..
T Consensus 177 lYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 177 LYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence 999999999999999988875322211 011 265666667776666666666666543211
Q ss_pred HhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHhHHHH
Q 012646 179 IERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVL 258 (459)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (459)
.+.++.++.+ .++. .+...++.++.++. +...+..+.+...+++..+.+.++...+...........+.++.|-|
T Consensus 257 ~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~-~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKy 331 (539)
T PF03137_consen 257 SERQEEKESS--ERKE--EDSDKDSFKDPKSK-KSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKY 331 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccchhhhh--hcch--hhhhhhcccccccc-cchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000 0000 00000000000000 00001111222222333344556777777777777788899999999
Q ss_pred HHh-cCCCCchhHHHHHHHHH-HHHHHhHHHHHHHhhcC--CchhhhhhhHHHHHHHHHHHHH--Hhh----------hc
Q 012646 259 FQS-MGFKGDASLYSSAMTGA-VLASSTLISIATVDKLG--RRALLISGGIQMITCQVIVSII--LGL----------KF 322 (459)
Q Consensus 259 ~~~-~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~----------~~ 322 (459)
++. ++.++.++..+.....+ +.++|.+++|++.+|++ .|..+....+...+..+..... ... .+
T Consensus 332 lE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y 411 (539)
T PF03137_consen 332 LESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPY 411 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCcc
Confidence 886 99998888877655544 66788899999999985 3444444444444433331111 100 00
Q ss_pred ------CC--------------------Ccc--cc-chhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhH
Q 012646 323 ------GP--------------------NQE--LS-KSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQS 373 (459)
Q Consensus 323 ------~~--------------------~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 373 (459)
.. ... .+ .......++..++..+..+....|.. ...-..+|+++|+.+.|
T Consensus 412 ~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~-~i~LR~V~~~~rs~AlG 490 (539)
T PF03137_consen 412 HNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPST-LITLRCVPPEQRSFALG 490 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchh-eeeeccCChhhcchhhh
Confidence 00 000 00 01112233333333344444445553 44458889999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHhhc
Q 012646 374 ITVAVNL-FFTFVIAQIFLTLLCSF 397 (459)
Q Consensus 374 ~~~~~~~-~g~~~~~~~~~~~~~~~ 397 (459)
+...+.+ +|.+-+|.++|.+.|..
T Consensus 491 v~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 491 VQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp -------------------------
T ss_pred HHHHHHHhhcCcchHHHHhHHHhhh
Confidence 9987754 67899999999998864
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-15 Score=119.77 Aligned_cols=137 Identities=25% Similarity=0.377 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhhhhhhccCc
Q 012646 35 FTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPT 114 (459)
Q Consensus 35 ~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 114 (459)
+.+.+.++..+++++.|++.||+|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+....++.|.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (141)
T TIGR00880 3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP 82 (141)
T ss_pred EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence 34566788899999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhc-cCC
Q 012646 115 HLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGIL-LPE 173 (459)
Q Consensus 115 ~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e 173 (459)
++|++..++......+|..+++.+ .....+..+|++.+++.++..++..+..++ .||
T Consensus 83 ~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 83 EERGVALGLMSAGIALGPLLGPPL--GGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhhHHHHHHHHhHHHHHHHhHHh--HHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999998 444456678999999988877776655444 454
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.4e-14 Score=130.55 Aligned_cols=384 Identities=13% Similarity=0.136 Sum_probs=221.4
Q ss_pred cccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhc---C--cchhhhHHHHHHHHHHHHHHHH----hhHHHHH
Q 012646 17 KHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDY---G--RRASIICGGISFLLGAALNAAA----ANLAMLL 87 (459)
Q Consensus 17 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~---G--rk~~l~~~~~~~~~~~~~~~~~----~~~~~l~ 87 (459)
..+..++++|+++++.....+...+...+ .+++|.++|.+ | ||+-++++.++..++.+..+.. .+.....
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~ 90 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAV 90 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHH
Confidence 33445678899999999988888777665 67889999986 3 5666777777776666655553 3566677
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhccC--ccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHH
Q 012646 88 TGRILLGVGIGFGNQAVPLYLSEMAP--THLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMT 165 (459)
Q Consensus 88 ~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~ 165 (459)
+.-++..+|.+....++-+++.|... +++|+...+.......+|.+++..+ .+...+..++|..|.+.+++..+..
T Consensus 91 ~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l--~G~l~~~~~~~~~f~i~~~~~~l~~ 168 (433)
T PF03092_consen 91 VLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLL--SGPLLDSFGPQGVFLISAALPLLML 168 (433)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHh--hhhhhhcCCCeEEehHHHHHHHHHH
Confidence 77788899999999999999999983 3447788888888899999999888 5555666789999998887777766
Q ss_pred Hhhhcc-CCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHH-HHHHHHhh
Q 012646 166 VGGILL-PETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVM-AIFMPMFQ 243 (459)
Q Consensus 166 ~~~~~~-~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 243 (459)
+..+++ +|.++ .+.++.... ..+ ..+..... .++.....++.++.+....... ..++..+.
T Consensus 169 ~~~~~~~~e~~~-----~~~~~~~~~----~~~-~~~~~~~~-------~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 231 (433)
T PF03092_consen 169 IVALFLLEERKV-----RPADEVFSF----GKE-EVPCLFGS-------FREQLSELWRALQQRAIWQPILFFIFFFNLP 231 (433)
T ss_pred HHHHHhhhhccc-----cccchhhcc----ccc-ccchhhHH-------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 555444 43110 000000000 000 00000000 0000112233333322111111 11111111
Q ss_pred hhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcC
Q 012646 244 ILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFG 323 (459)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (459)
.........++........++++...+....+..++.++|..+..+...+..-|+++....+...+..+.-.... ...+
T Consensus 232 ~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv-~~~n 310 (433)
T PF03092_consen 232 PSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLV-TRWN 310 (433)
T ss_pred cCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEE-EEEe
Confidence 111101011111111111237777778878777788888888877776777767666555443333222111110 0000
Q ss_pred CCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhch-----
Q 012646 324 PNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFK----- 398 (459)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~----- 398 (459)
.....++. +..+.-..+........+-|. ....+|++|+...|+.+++...+.++|..++..+...+.+..+
T Consensus 311 ~~~Gi~d~--~f~lgd~~l~~~~~~i~~mP~-lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~ 387 (433)
T PF03092_consen 311 LDLGIPDQ--WFALGDTILEEVIGMIAFMPS-LVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDD 387 (433)
T ss_pred eeeCcCCe--EEEEEhHHHHHHHHHHHHHHH-HHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 00001111 222223333444444455555 3566899999999999999999999999999999988877654
Q ss_pred ---hHHHHHHHHHHHHHHHHHHhccCCCC
Q 012646 399 ---FGIFLFFAGWVTIMTIFVYFFLPETK 424 (459)
Q Consensus 399 ---~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (459)
.....++..++.++.+.+..++|+.+
T Consensus 388 f~~l~~lili~~~~~ll~l~ll~lLp~~~ 416 (433)
T PF03092_consen 388 FSNLWLLILICSVIQLLPLPLLFLLPPQK 416 (433)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 22334444444455555555666544
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-12 Score=116.23 Aligned_cols=348 Identities=11% Similarity=0.047 Sum_probs=214.5
Q ss_pred cccCCchhhH-HHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhh
Q 012646 24 YCKYDNQGLA-AFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQ 102 (459)
Q Consensus 24 ~~~~s~~~~~-~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 102 (459)
|.|++..|+. -+.-...-.+....++...+.|..|.|++++++.+...+...+..+.++...+-+..++-|++.+. ..
T Consensus 34 ~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-ev 112 (412)
T PF01770_consen 34 DKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EV 112 (412)
T ss_pred ccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HH
Confidence 3688888876 566666777888899999999999999999999999999999999999999999999999999876 56
Q ss_pred hhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccCCChhhHHhhC
Q 012646 103 AVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERG 182 (459)
Q Consensus 103 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~es~~~l~~~~ 182 (459)
+-.+++-...|+++-.++.+...++.-+|..++.+++-........+.+...++......+.++..+++|..++...-++
T Consensus 113 ay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r 192 (412)
T PF01770_consen 113 AYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHR 192 (412)
T ss_pred HHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceec
Confidence 77899999999999999999999999999888888865555555567778877777766777777778887665433222
Q ss_pred CHHHHHHHHHHHhCCchhhHHHHH--H-HHHHHhhccCCcchHHHh---ccCchhHHHHHHHHHHhhhhcchHHHHHhHH
Q 012646 183 KKVEGRRVLEKIRGTKEVNAEYQD--M-VDASELANSIKHPFRNIL---ERRNRPQLVMAIFMPMFQILTGINSILFYAP 256 (459)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (459)
+.++... .++...++..+.+.+. . ++........+..++.+. +.-...+.++...+......+++.....|..
T Consensus 193 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ 271 (412)
T PF01770_consen 193 KPPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQ 271 (412)
T ss_pred cCccccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHH
Confidence 2111100 0000000000000000 0 000000000011111111 1112223344444445555556666777777
Q ss_pred HHHHhc---CCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhh
Q 012646 257 VLFQSM---GFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFS 333 (459)
Q Consensus 257 ~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (459)
.+.++. +-+..-.|..-....+.+.++.+..|++..++.+...+..+......+..++.... .++.
T Consensus 272 ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~-----------t~~I 340 (412)
T PF01770_consen 272 SLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSF-----------TGNI 340 (412)
T ss_pred HHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHH-----------hhHH
Confidence 676665 22333446677777777888888888885555554444433333332222222211 1345
Q ss_pred hHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHH
Q 012646 334 ILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFV 385 (459)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 385 (459)
|......+++...+..... +....++.....+.-+..+|++.+...+-..+
T Consensus 341 wv~Y~~yIif~~~y~fliT-iA~~qIA~~l~~e~yaLVFGiNtf~Al~LQti 391 (412)
T PF01770_consen 341 WVCYAGYIIFRSLYMFLIT-IASFQIAKNLSEERYALVFGINTFVALVLQTI 391 (412)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccceeeeeeeHHHHHHHHHHh
Confidence 5555555556655554333 22344455556677788888887776655444
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-13 Score=128.07 Aligned_cols=174 Identities=16% Similarity=0.128 Sum_probs=125.9
Q ss_pred HHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHH
Q 012646 237 IFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSI 316 (459)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 316 (459)
..+..+.............|.+.+++|.+..+.++......++.+++.++.|++.||+|||+.+..+..+..++.++...
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 101 (398)
T TIGR00895 22 SFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCAL 101 (398)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334456667788888889999999999999999999999999999999999999998888777776655543
Q ss_pred HHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012646 317 ILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCS 396 (459)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 396 (459)
. .+.+...+...+.+.+.+.. .+....++.|.+|++.|+++.++.+....+|..+++.+.+.+.+.
T Consensus 102 ~-------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 167 (398)
T TIGR00895 102 A-------------TNVTQLLILRFLAGLGLGGL-MPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV 167 (398)
T ss_pred c-------------cchHHHHHHHHHHhcccccc-hhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc
Confidence 2 12233333344444444433 344467888999999999999999999999999999999999888
Q ss_pred chhHHHHHHH-HHHHHHHHHHHhccCCCC
Q 012646 397 FKFGIFLFFA-GWVTIMTIFVYFFLPETK 424 (459)
Q Consensus 397 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 424 (459)
.++...+.+. .+..+...+...+.+++.
T Consensus 168 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 168 FGWRSLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred ccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence 8876555544 344444455555566543
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-12 Score=112.43 Aligned_cols=237 Identities=13% Similarity=0.127 Sum_probs=154.9
Q ss_pred CcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhh
Q 012646 23 NYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQ 102 (459)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 102 (459)
+++|+++.|++.+....+...++..++.|.++||+|||+.-+.-+++++++++. -..++++.++++|++.|++.+..+.
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTSLLfS 140 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATSLLFS 140 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999999999999999999965 4678999999999999999999998
Q ss_pred hhhhhh-hhcc----CccchhHHHHHHH-HHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhc-cCCCh
Q 012646 103 AVPLYL-SEMA----PTHLRGGLNMMFQ-LATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGIL-LPETP 175 (459)
Q Consensus 103 ~~~~~i-~~~~----~~~~r~~~~~~~~-~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~es~ 175 (459)
+-.+++ .|.- |++..+..++... ...++-.+.+.+++.........|-..+|....+..++..+++.. -+|+.
T Consensus 141 ~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENy 220 (354)
T PF05631_consen 141 AFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENY 220 (354)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccC
Confidence 888864 4543 2222333333333 223333444444533222222234477888877777776655443 45543
Q ss_pred hhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHhH
Q 012646 176 NSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYA 255 (459)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (459)
..- .+..+ . .+..++.++.+.++ ++++.+......+....+.....|.
T Consensus 221 g~~---~~~~~-----------------~---------~~~~~~a~~~i~~d---~ril~LG~~qslFE~smy~FVflWt 268 (354)
T PF05631_consen 221 GDT---SSSSS-----------------L---------SGSFREAWRAILSD---PRILLLGLIQSLFEGSMYLFVFLWT 268 (354)
T ss_pred CCc---ccccc-----------------h---------HHHHHHHHHHHHcC---chhHHHHHHHHHHHHHHHHheeeee
Confidence 100 00000 0 00001122333332 3345555666666666666777788
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhc
Q 012646 256 PVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKL 294 (459)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 294 (459)
|.+-.+ -.....|+++..+.++.++|+.+..++..+-
T Consensus 269 PaL~~~--~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~ 305 (354)
T PF05631_consen 269 PALDPD--DEELPLGLIFSSFMVAMMLGSSLFSRLLSKS 305 (354)
T ss_pred ceecCC--CCCCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 877521 1234578899999999999999887665543
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-13 Score=121.10 Aligned_cols=180 Identities=14% Similarity=0.162 Sum_probs=145.7
Q ss_pred hHHHHHHHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHH
Q 012646 231 PQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITC 310 (459)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 310 (459)
...++...+........--.++.-.|.+.++.++|..+.|.+.+...+..-++.++.|.++||.+.|..+..++++.++.
T Consensus 28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~ 107 (448)
T COG2271 28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIV 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHH
Confidence 33445555555555555667777889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHH
Q 012646 311 QVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIF 390 (459)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 390 (459)
.+++.+. ++.+...++..+-+.+.+.+++|.. ..+..-+|++.||+..++.|...++|+.+.|++.
T Consensus 108 nil~Gfs-------------~s~~~~~~l~~lng~fQg~Gwpp~~-~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~ 173 (448)
T COG2271 108 NILFGFS-------------PSLFLFAVLWVLNGWFQGMGWPPCA-RTITHWFSRKERGTWWSIWNTSHNIGGALAPLVA 173 (448)
T ss_pred HHHHhhh-------------hHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHcCccccCceEEEehhhhhcccchHHHHH
Confidence 9888875 3455666777777888888888874 5667999999999999999999999999999999
Q ss_pred --HHHHhhchhHHHHHHHHHH-HHHHHHHHhccCCCC
Q 012646 391 --LTLLCSFKFGIFLFFAGWV-TIMTIFVYFFLPETK 424 (459)
Q Consensus 391 --~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 424 (459)
+.+..+.++...+++.+++ +++++++++..+++.
T Consensus 174 ~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~P 210 (448)
T COG2271 174 LLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRP 210 (448)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 8888887876666655554 455566666666544
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-12 Score=122.64 Aligned_cols=178 Identities=11% Similarity=0.089 Sum_probs=130.2
Q ss_pred HHHHHHHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHH
Q 012646 232 QLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQ 311 (459)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 311 (459)
+.+....+..+.............|.+.+++|.+..+.++......++..++.++.|++.||+|||+.+..+.....++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~ 91 (405)
T TIGR00891 12 NAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGT 91 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 34444555555555556667777788888899999999999999999999999999999999999999998877777776
Q ss_pred HHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 012646 312 VIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFL 391 (459)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~ 391 (459)
+..... ++.+..+....+.+.+.+... +....++.|.+|+++|+++.++.+....+|..+++.+.+
T Consensus 92 ~~~~~~-------------~~~~~l~~~~~l~G~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 157 (405)
T TIGR00891 92 LACGFA-------------PGYITMFIARLVIGIGMGGEY-GSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYS 157 (405)
T ss_pred HHHHHh-------------ccHHHHHHHHHHHHhhhhhhh-HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 655443 123333444444444444333 333567789999999999999999999999999999999
Q ss_pred HHHhhch--hHHHHHHHHHHHHHHHHHHhccCCC
Q 012646 392 TLLCSFK--FGIFLFFAGWVTIMTIFVYFFLPET 423 (459)
Q Consensus 392 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (459)
.+.+..+ |...+...++..+...+.....||+
T Consensus 158 ~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 191 (405)
T TIGR00891 158 LVVPVWGDGWRALFFISILPIIFALWLRKNIPEA 191 (405)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 8887665 6655555555555555555555654
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-13 Score=129.67 Aligned_cols=148 Identities=14% Similarity=0.154 Sum_probs=125.8
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhh
Q 012646 26 KYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVP 105 (459)
Q Consensus 26 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 105 (459)
+.+..+.|++.+...++..++.+++|+++||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+...
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677889999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred hhhhhccCccchhHHHHH-HHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhh-hccCCCh
Q 012646 106 LYLSEMAPTHLRGGLNMM-FQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGG-ILLPETP 175 (459)
Q Consensus 106 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~es~ 175 (459)
.++.|.+|++.|+...+. ++....+|.++++.+ .+...+..|||..|.+.++..++..++. +.+++.+
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~--~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTL--AGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHH--HHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999988877655 667788999999999 5566666789999999888776665444 3455444
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.2e-13 Score=125.67 Aligned_cols=173 Identities=13% Similarity=0.172 Sum_probs=126.2
Q ss_pred HHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHH
Q 012646 237 IFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSI 316 (459)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 316 (459)
..+..+.............|.+.+++|++..+.++......++..++.++.|++.||+|||+.+..+.+...++.++...
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 107 (434)
T PRK11663 28 MYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGF 107 (434)
T ss_pred HHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 33444433333345677788888899999999999999999999999999999999999999998888887777765554
Q ss_pred HHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012646 317 ILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCS 396 (459)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 396 (459)
. ++.+...+...+.+.+.+... +....++.|.+|+++|++++++.+....+|..+++.+.+.+.+.
T Consensus 108 ~-------------~~~~~l~~~~~l~g~~~g~~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~ 173 (434)
T PRK11663 108 S-------------SSLWAFALLWVLNAFFQGWGW-PVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH 173 (434)
T ss_pred H-------------hHHHHHHHHHHHHHHHHHccc-hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3 122223333333444444333 33357778999999999999999999999999999999999988
Q ss_pred chhHHHHHHHHHHHH-HHHHHHhccCCC
Q 012646 397 FKFGIFLFFAGWVTI-MTIFVYFFLPET 423 (459)
Q Consensus 397 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 423 (459)
.+|...+...++..+ ..++..++++++
T Consensus 174 ~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 174 YGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 888766665554433 334444445543
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.6e-13 Score=124.77 Aligned_cols=151 Identities=14% Similarity=0.136 Sum_probs=125.2
Q ss_pred ccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhh
Q 012646 20 HENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGF 99 (459)
Q Consensus 20 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 99 (459)
..++++|+++.+.+++.+...++..++.++.|+++||+|||+.+..+.....+........++.+.+++.+++.+++.+.
T Consensus 242 ~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~ 321 (393)
T PRK15011 242 FIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGI 321 (393)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34556789999999998888888889999999999999999988887766666555555677888888899999888887
Q ss_pred hhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccCC
Q 012646 100 GNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPE 173 (459)
Q Consensus 100 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e 173 (459)
..+....+..|..|+ +|+++.++++....+|..+++.+ .+...+..||+..|++.+++.++..+..+++||
T Consensus 322 ~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l--~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 322 LGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSL--AGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 777777888999875 58999999999999999999999 455556679999999988888887777777765
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.1e-13 Score=126.26 Aligned_cols=146 Identities=14% Similarity=0.234 Sum_probs=122.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHh----hHHHHHHHHHHhhhhhhhhhhh
Q 012646 28 DNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAA----NLAMLLTGRILLGVGIGFGNQA 103 (459)
Q Consensus 28 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~ 103 (459)
+..+.+...+...++..++.++.|+++||+|||+++..+.++.+++..+..... +++.+++.+++.|++.+...+.
T Consensus 249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~ 328 (418)
T TIGR00889 249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS 328 (418)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999988877766632 3466778899999999988889
Q ss_pred hhhhhhhccCccchhHHHHHHH-HHHHHHHHHHHHHhhhcccccc------chhHHHHHhhHHHHHHHHHhh-hccCCCh
Q 012646 104 VPLYLSEMAPTHLRGGLNMMFQ-LATTLGIFTANMINYGTQKLET------WGWRLSLGLAAAPALMMTVGG-ILLPETP 175 (459)
Q Consensus 104 ~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~l~~~~~~~~~------~gwr~~f~~~~~~~~~~~~~~-~~~~es~ 175 (459)
...++.|++|+++|+++.++.+ ...++|.++||.++. ...+. +||+..|.+.++..++..++. +++||+.
T Consensus 329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G--~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSG--VMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHH--HHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 8999999999999999999997 678899999999953 33333 479999999888877776554 4567764
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-12 Score=126.36 Aligned_cols=162 Identities=14% Similarity=0.123 Sum_probs=122.7
Q ss_pred HHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccc
Q 012646 249 NSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQEL 328 (459)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (459)
..+....|.+..++|.+..+.+++.+...++.+++.++.|+++||+|||+.++++.++..++.++..+.
T Consensus 184 ~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa----------- 252 (742)
T TIGR01299 184 FVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFV----------- 252 (742)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 345556777777899999999999999999999999999999999999999998887777766655543
Q ss_pred cchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc-----------
Q 012646 329 SKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSF----------- 397 (459)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~----------- 397 (459)
.+.+..++.-++.+++.+... +....++.|.+|++.|+...++.+....+|.++++.+...+..+.
T Consensus 253 --~s~~~llv~R~l~G~g~g~~~-p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~ 329 (742)
T TIGR01299 253 --QGYGFFLFCRLLSGFGIGGAI-PIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQ 329 (742)
T ss_pred --hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccc
Confidence 123344444555555555433 555788899999999999999999999999999998876665433
Q ss_pred --hhHHHHHHHHHHHHHHHHHHhccCCCC
Q 012646 398 --KFGIFLFFAGWVTIMTIFVYFFLPETK 424 (459)
Q Consensus 398 --~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (459)
+|...+.+.++..++.++..+++||..
T Consensus 330 ~~gWR~l~~i~~lp~ll~ll~~~~lPESP 358 (742)
T TIGR01299 330 FHSWRVFVIVCAFPCVFAIGALTFMPESP 358 (742)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 355566666666666667777788763
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.8e-12 Score=120.59 Aligned_cols=180 Identities=11% Similarity=0.073 Sum_probs=131.4
Q ss_pred HHHHHHHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHH
Q 012646 232 QLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQ 311 (459)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 311 (459)
.......+..+..........+..|.+.+++|++..+.++..+...++..++.+..|++.||+|||+.+..+.++..++.
T Consensus 8 ~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~ 87 (412)
T TIGR02332 8 RLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAS 87 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 34444444555555555667777787778899999999999999999999999999999999999999988888888777
Q ss_pred HHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 012646 312 VIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFL 391 (459)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~ 391 (459)
+..... ++.+...+.-.+.+.+.+.. .+....++.|.+|+++|+++.++.+....+|..+++.+.+
T Consensus 88 ~~~~~~-------------~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~ 153 (412)
T TIGR02332 88 TATMFA-------------TGPESLYLLRILVGIAEAGF-LPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSG 153 (412)
T ss_pred HHHHHh-------------cCHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766553 22333344444445554433 3444567789999999999999999999999999999999
Q ss_pred HHHh------hchhHHHHHHHHHHH-HHHHHHHhccCCCCC
Q 012646 392 TLLC------SFKFGIFLFFAGWVT-IMTIFVYFFLPETKG 425 (459)
Q Consensus 392 ~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 425 (459)
.+.+ ..+|...+.+.++.. +...+.++++||+++
T Consensus 154 ~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 154 YILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 8864 246766665544443 444555566676553
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.2e-13 Score=122.76 Aligned_cols=148 Identities=28% Similarity=0.360 Sum_probs=134.7
Q ss_pred CCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcch-hhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhh
Q 012646 22 NNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRA-SIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFG 100 (459)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 100 (459)
++.+|.++.+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.+.....++.+.+.+..++.|++.+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 282 (352)
T cd06174 203 QEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFA 282 (352)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcc
Confidence 3445889999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhcc
Q 012646 101 NQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILL 171 (459)
Q Consensus 101 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~ 171 (459)
.+....++.|..|+++|++.+++......+|..+++.+ .....+..+|++.+++.+++.++..+..+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i--~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~~ 351 (352)
T cd06174 283 FPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLL--AGLLLDTGGYGGVFLILAALALLAALLLLLL 351 (352)
T ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcccCcchHHHHHHHHHHHHHHHheec
Confidence 99999999999999999999999999999999999999 5555556789999999999888877665443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-12 Score=123.56 Aligned_cols=162 Identities=15% Similarity=0.118 Sum_probs=122.9
Q ss_pred HHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccc
Q 012646 249 NSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQEL 328 (459)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (459)
.......|.+.+++|.+..+.++......++..++.++.|++.||+|||+.+..+.....++.......
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~----------- 79 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA----------- 79 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-----------
Confidence 445566677778899999999999999999999999999999999999999988888777776665543
Q ss_pred cchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 012646 329 SKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGW 408 (459)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (459)
.+.+...+...+.+.+.+.. .+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.++.++...+...++
T Consensus 80 --~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 156 (399)
T TIGR00893 80 --GAYVSLYILRVLLGAAEAPF-FPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGV 156 (399)
T ss_pred --cCHHHHHHHHHHHHHHHHhh-hhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 22344444555555555533 344467888999999999999999999999999999999998888887666655554
Q ss_pred HHHH-HHHHHhccCCCC
Q 012646 409 VTIM-TIFVYFFLPETK 424 (459)
Q Consensus 409 ~~~~-~~~~~~~~~~~~ 424 (459)
..+. .++..+..++++
T Consensus 157 ~~~~~~~~~~~~~~~~~ 173 (399)
T TIGR00893 157 LGIIWGVLWLKFIPDPP 173 (399)
T ss_pred HHHHHHHHhhheecCCC
Confidence 4443 333444455443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.8e-12 Score=119.94 Aligned_cols=173 Identities=10% Similarity=0.124 Sum_probs=119.5
Q ss_pred HHHHHHhhhhcchHHHHHhHHHHHH-hcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHH
Q 012646 236 AIFMPMFQILTGINSILFYAPVLFQ-SMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIV 314 (459)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 314 (459)
.+.+..++...+......+.|.+++ ++|++..+.++..+...+..+++.+..|+++||+|||+.+..+.....++.+.+
T Consensus 11 ~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~ 90 (395)
T PRK10054 11 ALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAI 90 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHH
Confidence 3334444445555666666666654 589999999999999999999999999999999999999888887776666555
Q ss_pred HHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 012646 315 SIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLL 394 (459)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 394 (459)
.+. ++.+..+....+.+...+ ...+....+..|..|+++|+++.|+.+...++|..++|.+.+.+.
T Consensus 91 ~~~-------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 91 PLV-------------NNVTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred HHH-------------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 112222322333333333 334444677789999999999999999999999999999999887
Q ss_pred hhchhHHHHHHHHHHHHHHH-HHHhccCCC
Q 012646 395 CSFKFGIFLFFAGWVTIMTI-FVYFFLPET 423 (459)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 423 (459)
+ .++...+...+++.++.. +..+..++.
T Consensus 157 ~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 157 M-QSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred H-hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5 555555555554444443 333444443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.5e-12 Score=118.69 Aligned_cols=165 Identities=17% Similarity=0.178 Sum_probs=121.0
Q ss_pred cchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCC
Q 012646 246 TGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPN 325 (459)
Q Consensus 246 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (459)
..........|.+.+++|.+..+.++......++..++.++.|++.||+|||+.+..+..+..++.+.....
T Consensus 19 ~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-------- 90 (385)
T TIGR00710 19 LGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS-------- 90 (385)
T ss_pred HHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH--------
Confidence 344455556677888899999999999999999999999999999999999999998887777776665543
Q ss_pred ccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 012646 326 QELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFF 405 (459)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (459)
++.+...+...+.+.+.+... +....++.|.+|+++|+++.++.+....++..+++.+.+.+.++.++...+..
T Consensus 91 -----~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 164 (385)
T TIGR00710 91 -----NNIETLLVLRFVQAFGASAGS-VISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAF 164 (385)
T ss_pred -----ccHHHHHHHHHHHHcchhHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 122333333344444444333 33357778999999999999999999999999999999999888887665554
Q ss_pred HHHHH-HHHHHHHhccCCCC
Q 012646 406 AGWVT-IMTIFVYFFLPETK 424 (459)
Q Consensus 406 ~~~~~-~~~~~~~~~~~~~~ 424 (459)
.++.. +......+..||++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~ 184 (385)
T TIGR00710 165 LSLAGILLSALIFFILPETL 184 (385)
T ss_pred HHHHHHHHHHHHHHhCCCCC
Confidence 44443 33344444555544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-11 Score=116.42 Aligned_cols=167 Identities=10% Similarity=0.122 Sum_probs=120.4
Q ss_pred HHhhhhcchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhc-CCchhhhhhhHHHHHHHHHHHHH
Q 012646 240 PMFQILTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKL-GRRALLISGGIQMITCQVIVSII 317 (459)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~ 317 (459)
........++....++|.++++ +|++..+++...........++.+++|+++||+ |||+.+..+.++..++.+++...
T Consensus 17 ~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~ 96 (493)
T PRK15462 17 LQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS 96 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444556677788878765 899999999999999999999999999999999 99999999888888776554321
Q ss_pred HhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCcc--ccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012646 318 LGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLE--TRSAGQSITVAVNLFFTFVIAQIFLTLLC 395 (459)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 395 (459)
. ...........+...+.+. ..+...++++|.+|++ .|.++.++.+...++|+.++|.+.+++.+
T Consensus 97 ~------------~~~~~~~l~l~li~iG~G~-~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~ 163 (493)
T PRK15462 97 E------------IHPSFLYLSLAIIVCGYGL-FKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE 163 (493)
T ss_pred h------------cchhHHHHHHHHHHHhccc-ccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 1111122222222233332 2343357789999876 69999999999999999999999999998
Q ss_pred hchhHHHHHHHHHHHHHHHHHHhc
Q 012646 396 SFKFGIFLFFAGWVTIMTIFVYFF 419 (459)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~ 419 (459)
+.+|...+..+++..+.+++.+..
T Consensus 164 ~~Gw~~~F~iaaigm~l~li~~~~ 187 (493)
T PRK15462 164 EYSWAMGFGLAAVGMIAGLVIFLC 187 (493)
T ss_pred hhChHHHHHHHHHHHHHHHHHHHH
Confidence 888877666666555555555443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-12 Score=120.78 Aligned_cols=142 Identities=20% Similarity=0.117 Sum_probs=122.3
Q ss_pred hhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 012646 31 GLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSE 110 (459)
Q Consensus 31 ~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 110 (459)
+.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45667788888999999999999999999999999999989888888888888888899999999999888888888889
Q ss_pred ccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccCCC
Q 012646 111 MAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPET 174 (459)
Q Consensus 111 ~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~es 174 (459)
..|+++|+++.++++....+|..+++.+ .+...+..||++.|++.++..++..+..+++++.
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~--~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPL--AGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999888887 4555566789999999888888776666555443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.2e-12 Score=118.43 Aligned_cols=150 Identities=15% Similarity=0.159 Sum_probs=125.5
Q ss_pred cCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhh
Q 012646 21 ENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFG 100 (459)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 100 (459)
..+++|.++.+.+++.+.......++.++.|++.||+|||+.+..+.++..+......+.++.+.+.+.+++.|++.+..
T Consensus 226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 305 (375)
T TIGR00899 226 IIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGIL 305 (375)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999988887778888999999999999999998888777766666667788888888999999999988
Q ss_pred hhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccCC
Q 012646 101 NQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPE 173 (459)
Q Consensus 101 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e 173 (459)
.+....++.|..|+ +|+++.+++.....+|..++|.+ .+...+..||+..|++.++..++..+...+++|
T Consensus 306 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~--~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 306 AGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSV--GGILAERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHH--HHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 88888899998875 56799999999999999999998 555556678999999998888877776666654
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-11 Score=109.33 Aligned_cols=175 Identities=15% Similarity=0.116 Sum_probs=141.5
Q ss_pred HHHHHHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHH
Q 012646 233 LVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQV 312 (459)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 312 (459)
.++...+..|..........-.+|.+.+++|.+...+|...+.++++..++.++...+.||+.||+++.....++.++.+
T Consensus 14 ~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~ 93 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNL 93 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH
Confidence 35556666666667777888889999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 012646 313 IVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLT 392 (459)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 392 (459)
+..+. ++.+..++.-.+.+...+.. .++......++.|+++|+++.++......+...++.++..+
T Consensus 94 l~alA-------------p~f~~Ll~aR~~~g~a~G~f-~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ 159 (394)
T COG2814 94 LSALA-------------PSFAVLLLARALAGLAHGVF-WSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTF 159 (394)
T ss_pred HHHHh-------------ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHH
Confidence 88775 22334444455555555533 44556888999999999999999999999999999999999
Q ss_pred HHhhchhHHHHHH-HHHHHHHHHHHHhccC
Q 012646 393 LLCSFKFGIFLFF-AGWVTIMTIFVYFFLP 421 (459)
Q Consensus 393 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 421 (459)
+-|..||...+.. +.+..+..+..+..+|
T Consensus 160 ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 160 LGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999998655554 4444555556666777
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-11 Score=115.02 Aligned_cols=159 Identities=12% Similarity=0.070 Sum_probs=117.8
Q ss_pred HHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccc
Q 012646 251 ILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSK 330 (459)
Q Consensus 251 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (459)
.....|.+.+++|.+..+.++......++..++.+..|++.||+|||+.+..+.....++.+.....
T Consensus 28 ~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------- 94 (390)
T PRK03545 28 PVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA------------- 94 (390)
T ss_pred HHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-------------
Confidence 3345688888899999999999999999999999999999999999999999888877777666543
Q ss_pred hhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 012646 331 SFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVT 410 (459)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (459)
++.+..++...+.+.+.+ ...+....++.|.+|+++|+++.|+......++..++|.+.+.+.++.+|...+...++..
T Consensus 95 ~~~~~l~~~r~~~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~ 173 (390)
T PRK03545 95 WNFTVLLISRIGIAFAHA-IFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGA 173 (390)
T ss_pred ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHH
Confidence 223333333333333333 2334445677899999999999999999999999999999999988888776665555444
Q ss_pred HHH-HHHHhccCCC
Q 012646 411 IMT-IFVYFFLPET 423 (459)
Q Consensus 411 ~~~-~~~~~~~~~~ 423 (459)
+.. .......|+.
T Consensus 174 ~l~~~~~~~~~~~~ 187 (390)
T PRK03545 174 LITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHhCCCC
Confidence 433 3334445543
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.4e-12 Score=117.78 Aligned_cols=164 Identities=12% Similarity=0.083 Sum_probs=121.6
Q ss_pred chHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCc
Q 012646 247 GINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQ 326 (459)
Q Consensus 247 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (459)
.........|.+..+.+.+..+.++......++.+++.++.|+++||+|||+.+..+..+..++..+.......
T Consensus 14 ~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~------ 87 (365)
T TIGR00900 14 GTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL------ 87 (365)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc------
Confidence 44556666777888889999999999999999999999999999999999999998887777666655543210
Q ss_pred cccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 012646 327 ELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFA 406 (459)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (459)
...+.+...+...+.+.+.+.. .+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..++...+...
T Consensus 88 --~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 164 (365)
T TIGR00900 88 --GGLNIWQVYVLAGILAIAQAFF-TPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD 164 (365)
T ss_pred --CCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 0112344444444445444433 3444678889999999999999999999999999999999999888877666655
Q ss_pred HHHHHHHHHHHhc
Q 012646 407 GWVTIMTIFVYFF 419 (459)
Q Consensus 407 ~~~~~~~~~~~~~ 419 (459)
++..+...+....
T Consensus 165 ~~~~~~~~~~~~~ 177 (365)
T TIGR00900 165 AVGFAISALLIVS 177 (365)
T ss_pred HHHHHHHHHHHHh
Confidence 5554444444333
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-12 Score=119.71 Aligned_cols=164 Identities=11% Similarity=0.099 Sum_probs=119.6
Q ss_pred chHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCc
Q 012646 247 GINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQ 326 (459)
Q Consensus 247 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (459)
....+....|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.++....
T Consensus 10 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------- 80 (379)
T TIGR00881 10 VRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS--------- 80 (379)
T ss_pred hHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh---------
Confidence 34556667788888899999999999999999999999999999999999999999888887777766554
Q ss_pred cccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHH-HHHHHHhhchhHHHHHH
Q 012646 327 ELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQ-IFLTLLCSFKFGIFLFF 405 (459)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~ 405 (459)
.+.+..++...+.+.+.+. ..+....++.|.+|+++|+++.++.+....+|..+++. +.+.+.+..++...+..
T Consensus 81 ----~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (379)
T TIGR00881 81 ----TSLWVMAALWALNGIFQGM-GWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV 155 (379)
T ss_pred ----hhHHHHHHHHHHHHhhccc-cCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 1233334444444444443 34455678889999999999999999999999999994 55556566666555544
Q ss_pred HHH-HHHHHHHHHhccCCCC
Q 012646 406 AGW-VTIMTIFVYFFLPETK 424 (459)
Q Consensus 406 ~~~-~~~~~~~~~~~~~~~~ 424 (459)
.++ ..+..++..+..++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 156 PGIIAIIVSLICFLLLRDSP 175 (379)
T ss_pred HHHHHHHHHHHHheeeCCCc
Confidence 443 3344445555555543
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-12 Score=119.65 Aligned_cols=141 Identities=13% Similarity=0.021 Sum_probs=121.2
Q ss_pred CcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhH--HHHHHHHHHhhhhhhhh
Q 012646 23 NYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANL--AMLLTGRILLGVGIGFG 100 (459)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~ 100 (459)
++++.++.+.+.+.+.+.++..++.++.|+++||+|||+.+..+..+..++.++..+.++. ..++...++.|++.+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 312 (377)
T TIGR00890 233 QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGT 312 (377)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccc
Confidence 4568888899999999999999999999999999999999999999999888887776643 33456678889888888
Q ss_pred hhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHH
Q 012646 101 NQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMT 165 (459)
Q Consensus 101 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~ 165 (459)
.+....++.|.+|+++|+++.++......+|..++|.+ .+...+..||++.|++.++..++..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 313 ISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLI--ASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred hhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHH--HHHHHhhhchhhHHHHHHHHHHHhc
Confidence 88888899999999999999999999999999999998 5555566789999998887766543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-11 Score=116.67 Aligned_cols=159 Identities=10% Similarity=0.053 Sum_probs=119.2
Q ss_pred HHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHH
Q 012646 237 IFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSI 316 (459)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 316 (459)
..+..+.............|.+.+++|.++.+.++......++..++.++.|++.||+|||+.+..+.....++.+....
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 102 (426)
T PRK12307 23 AWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGL 102 (426)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 33334434444455566667777789999999999999999999999999999999999999999998888887766555
Q ss_pred HHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012646 317 ILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCS 396 (459)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 396 (459)
. ++.+...+.-.+.+.+.+.. .+....++.|.+|+++|+++.++......+|..+++.+.+.+.+.
T Consensus 103 ~-------------~~~~~l~~~r~l~G~g~g~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~ 168 (426)
T PRK12307 103 A-------------SGVIMLTLSRFIVGMGMAGE-YACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA 168 (426)
T ss_pred H-------------hHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc
Confidence 4 22333444444444444433 333356778999999999999999999999999999999888887
Q ss_pred chhHHHHHHHHHH
Q 012646 397 FKFGIFLFFAGWV 409 (459)
Q Consensus 397 ~~~~~~~~~~~~~ 409 (459)
.+|...+.+....
T Consensus 169 ~~w~~~f~i~~~~ 181 (426)
T PRK12307 169 YGWRAAFFVGLLP 181 (426)
T ss_pred CCHHHHHHHHHHH
Confidence 7876666554433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=116.78 Aligned_cols=168 Identities=13% Similarity=0.026 Sum_probs=120.6
Q ss_pred chHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCc
Q 012646 247 GINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQ 326 (459)
Q Consensus 247 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (459)
.........|.+.++.+.++.+.+.......++..++.++.|+++||++||+.+..+..+..++...+......
T Consensus 32 ~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~------ 105 (417)
T PRK10489 32 GLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL------ 105 (417)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc------
Confidence 44556667788888888888999999999999999999999999999999999888777666665544332100
Q ss_pred cccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 012646 327 ELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFA 406 (459)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (459)
..++.+.......+.+.+.+....+. ...+.|..|+++|+++.++.+....+|..++|.+.+.+.+..++...+.+.
T Consensus 106 --~~~~~~~l~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~ 182 (417)
T PRK10489 106 --PEPSLLAIYLLGLWDGFFGSLGVTAL-LAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLA 182 (417)
T ss_pred --CCCcHHHHHHHHHHHHHHHHHHHHHH-hhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence 01112223333333344433333333 567789999999999999999999999999999999998887776666666
Q ss_pred HHHHHHHHHHHhccCCC
Q 012646 407 GWVTIMTIFVYFFLPET 423 (459)
Q Consensus 407 ~~~~~~~~~~~~~~~~~ 423 (459)
++..+...+..+.+|+.
T Consensus 183 ~~~~~~~~~~~~~l~~~ 199 (417)
T PRK10489 183 AAGTFITLLPLLRLPAL 199 (417)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 66665555555666554
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-11 Score=113.64 Aligned_cols=173 Identities=13% Similarity=0.068 Sum_probs=122.5
Q ss_pred chhHHHHHHHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHH
Q 012646 229 NRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMI 308 (459)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 308 (459)
++++..+...+..+.............|.+.+++|++..+.+.......++..++.++.|++.||+|||+.+..+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~ 83 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI 83 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33444444444455444445566777888888899999999999999999999999999999999999999888877777
Q ss_pred HHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHH
Q 012646 309 TCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQ 388 (459)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 388 (459)
++..+.... ++.+...+...+.+.+.+.... ....++.|.+|+++|+.+.+..+....+++.++|.
T Consensus 84 i~~~l~~~~-------------~~~~~~~~~~~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 149 (394)
T PRK03699 84 LAVAGLMFS-------------HSLALFSIAMFVLGVVSGITMS-IGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPI 149 (394)
T ss_pred HHHHHHHHc-------------chHHHHHHHHHHHHHhhHhhcc-chhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 666655442 2233334444444544443333 33566789999999999999988888899999999
Q ss_pred HHHHHHh-hchhHHHHHHHHHHHHHHHH
Q 012646 389 IFLTLLC-SFKFGIFLFFAGWVTIMTIF 415 (459)
Q Consensus 389 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 415 (459)
+.+.+.+ ..+|...+...++..+...+
T Consensus 150 ~~~~l~~~~~gw~~~f~~~~~~~~~~~~ 177 (394)
T PRK03699 150 IAAYLLARSIEWYWVYACIGLVYVAIFI 177 (394)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 9888765 45676655554444443333
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-12 Score=121.49 Aligned_cols=141 Identities=9% Similarity=0.018 Sum_probs=116.4
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhc--CcchhhhH--HHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhh
Q 012646 24 YCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDY--GRRASIIC--GGISFLLGAALNAAAANLAMLLTGRILLGVGIGF 99 (459)
Q Consensus 24 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grk~~l~~--~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 99 (459)
+.|.+..+.+++.+...++..++.++.|.++||. ++|+...+ +.++.+++.+++.+.++++.+++.+++.|++.+.
T Consensus 270 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~ 349 (455)
T TIGR00892 270 DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGS 349 (455)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhch
Confidence 4688999999999999999999999999999984 34433333 3444455556667788999999999999999999
Q ss_pred hhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccc-hhHHHHHhhHHHHHHHHH
Q 012646 100 GNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETW-GWRLSLGLAAAPALMMTV 166 (459)
Q Consensus 100 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~-gwr~~f~~~~~~~~~~~~ 166 (459)
..+...+++.|.+|++++++.+++++....+|.++||.+ .+...+.. +|++.|++.++..++..+
T Consensus 350 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i--~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 350 VGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPL--AGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccc--eeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999999999 55555554 599999998887665544
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-11 Score=116.86 Aligned_cols=168 Identities=12% Similarity=0.009 Sum_probs=123.9
Q ss_pred HHHHHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHH
Q 012646 234 VMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVI 313 (459)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 313 (459)
++...+..+...........+.|.+.+++|.++.+.++......++..++.++.|+++||+|||+.+..+.....++.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 91 (471)
T PRK10504 12 LWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLF 91 (471)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 34444455555555667777899999999999999999988888999999999999999999999988877766666554
Q ss_pred HHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 012646 314 VSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTL 393 (459)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 393 (459)
.... .+.+..+....+.+.+.+.. .+.....+.|.+|+++|+++.|+.+....++..++|.+.+.+
T Consensus 92 ~~~~-------------~~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l 157 (471)
T PRK10504 92 CALS-------------GTLNELLLARVLQGVGGAMM-VPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLL 157 (471)
T ss_pred HHHh-------------CCHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4332 22333344444444444433 344467778999999999999999999999999999999999
Q ss_pred HhhchhHHHHHHHHHHHHHHHH
Q 012646 394 LCSFKFGIFLFFAGWVTIMTIF 415 (459)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~ 415 (459)
.++.+|...+.+.....+...+
T Consensus 158 ~~~~gw~~~f~~~~~~~~l~~~ 179 (471)
T PRK10504 158 VEYASWHWIFLINIPVGIIGAI 179 (471)
T ss_pred HhhccHHHHHHHHHHHHHHHHH
Confidence 9988876666555444433333
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-11 Score=115.84 Aligned_cols=169 Identities=15% Similarity=0.088 Sum_probs=121.7
Q ss_pred HhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhh
Q 012646 241 MFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGL 320 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
.+.............|.+.+++|.++.+.++......++.+++.++.|++.||+|||+.+..+..+..++.+.....
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--- 100 (406)
T PRK11551 24 ALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA--- 100 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh---
Confidence 33333344556666788888899999999999999999999999999999999999999998877776665544432
Q ss_pred hcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhH
Q 012646 321 KFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFG 400 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 400 (459)
.+.+...+...+.+.+.+... +....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..++.
T Consensus 101 ----------~~~~~~~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 169 (406)
T PRK11551 101 ----------WDFPSLLVARLLTGVGLGGAL-PNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWR 169 (406)
T ss_pred ----------ccHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence 223334444444455444333 344577789999999999999999999999999999888877777776
Q ss_pred HHHHHHHHHHH-HHHHHHhccCCC
Q 012646 401 IFLFFAGWVTI-MTIFVYFFLPET 423 (459)
Q Consensus 401 ~~~~~~~~~~~-~~~~~~~~~~~~ 423 (459)
..+...+++.+ ...+...++||+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~ 193 (406)
T PRK11551 170 HIFYVGGVGPLLLVPLLMRWLPES 193 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCC
Confidence 55555444333 333344445654
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-11 Score=112.58 Aligned_cols=148 Identities=15% Similarity=0.088 Sum_probs=115.4
Q ss_pred HHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccc
Q 012646 251 ILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSK 330 (459)
Q Consensus 251 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (459)
.....|.+.+++|+++.+.+.......++..++.++.|++.||+|||+.+..+..+..++.+.....
T Consensus 39 ~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------------- 105 (394)
T PRK10213 39 PVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA------------- 105 (394)
T ss_pred HHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 3345677778899999999999999999999999999999999999999999988888776665443
Q ss_pred hhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 012646 331 SFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVT 410 (459)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (459)
++.+..++.-.+.+.+.+.. .+....++.|.+|+++|+.+.++......++..++|.+.+.+.+..+|...+...+++.
T Consensus 106 ~~~~~l~~~r~l~G~~~g~~-~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~ 184 (394)
T PRK10213 106 NSFSLLLIGRACLGLALGGF-WAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMG 184 (394)
T ss_pred ChHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22334444444555555543 34446777899999999999999999999999999999999998888876665555444
Q ss_pred HH
Q 012646 411 IM 412 (459)
Q Consensus 411 ~~ 412 (459)
+.
T Consensus 185 ~~ 186 (394)
T PRK10213 185 VL 186 (394)
T ss_pred HH
Confidence 43
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-11 Score=115.56 Aligned_cols=174 Identities=10% Similarity=0.155 Sum_probs=126.2
Q ss_pred HHHHHHHHhhhhcchHHHHHhHHHHHHh---cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhh-cCCchhhhhhhHHHHH
Q 012646 234 VMAIFMPMFQILTGINSILFYAPVLFQS---MGFKGDASLYSSAMTGAVLASSTLISIATVDK-LGRRALLISGGIQMIT 309 (459)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~ 309 (459)
++.+....+....++.....++|.++++ +|++..+++.......++..++.+++|+++|| +|||+.+..+..+..+
T Consensus 12 ~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~ 91 (475)
T TIGR00924 12 LFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLML 91 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHH
Confidence 3444444555555666777778877764 79999999999999999999999999999999 8999999999988888
Q ss_pred HHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccc---cchhhHHHHHHHHHHHHHH
Q 012646 310 CQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLET---RSAGQSITVAVNLFFTFVI 386 (459)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~g~~~~~~~~g~~~~ 386 (459)
+.+++... .+.+...+...+.+.+.+ ...+...++++|.+|++. |+++.++.+...++|..++
T Consensus 92 g~~~~~~~-------------~~~~~~~~~~~l~g~g~g-~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig 157 (475)
T TIGR00924 92 GHFMLAMS-------------IYPDLIFYGLGTIAVGSG-LFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFIS 157 (475)
T ss_pred HHHHHHhc-------------ccHhHHHHHHHHHHhccc-cccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHH
Confidence 87666542 112223333333333333 233444567788887654 8889999999999999999
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhccC
Q 012646 387 AQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLP 421 (459)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (459)
|.+.+.+.++.++...+...++..+.+.+.+...+
T Consensus 158 ~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~ 192 (475)
T TIGR00924 158 PLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGR 192 (475)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999988887766666555555555544433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=116.26 Aligned_cols=137 Identities=15% Similarity=0.095 Sum_probs=119.9
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhhhhhhc
Q 012646 32 LAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEM 111 (459)
Q Consensus 32 ~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 111 (459)
.++..+.+.++..+++++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 46667778888899999999999999999999999999999988888888888888899999999998888888889999
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhc
Q 012646 112 APTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGIL 170 (459)
Q Consensus 112 ~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~ 170 (459)
+|+++|+++.++.+....+|..++|.+ .+...+..||+..|.+.++..++..+..++
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~--~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 331 VPSQVRGTALGGYAAFQDIAYGVSGPL--AGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998 555666678999999988887777665543
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-11 Score=113.39 Aligned_cols=176 Identities=15% Similarity=0.203 Sum_probs=124.8
Q ss_pred HHHHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHH
Q 012646 235 MAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIV 314 (459)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 314 (459)
............+........|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+.....++....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~ 85 (392)
T PRK10473 6 LCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLC 85 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 33444444444455566677888888899999999999999999999999999999999999999988887777766655
Q ss_pred HHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 012646 315 SIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLL 394 (459)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 394 (459)
... ++.+.......+.+.+.+.. .+....++.|.+|+++|+++.++.+....++..++|.+.+.+.
T Consensus 86 ~~~-------------~~~~~~~~~~~l~g~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~ 151 (392)
T PRK10473 86 SLA-------------ETSSLFLAGRFLQGIGAGCC-YVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM 151 (392)
T ss_pred HHh-------------CcHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 11222333333334333322 2334577789999999999999999999999999999998887
Q ss_pred hhchhHHHHHHHH-HHHHHHHHHHhccCCCC
Q 012646 395 CSFKFGIFLFFAG-WVTIMTIFVYFFLPETK 424 (459)
Q Consensus 395 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 424 (459)
+..+|...+.+.+ +..+..++.....+|++
T Consensus 152 ~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 152 LKFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred hCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 7777765444443 33444444455566544
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3e-11 Score=117.10 Aligned_cols=176 Identities=12% Similarity=0.050 Sum_probs=126.2
Q ss_pred HHHHHHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHH
Q 012646 233 LVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQV 312 (459)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 312 (459)
.+....+..+.............|.+.+++|.+..+.+.......++..++.++.|++.||+|||+.+..+..+..++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 100 (496)
T PRK03893 21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTL 100 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 33344444444444555666677888888999999999999999999999999999999999999999888877777766
Q ss_pred HHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 012646 313 IVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLT 392 (459)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 392 (459)
..... .+.+...+...+.+.+.+.. .+....++.|.+|++.|+.+.++......+|..+++.+.+.
T Consensus 101 ~~~~~-------------~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 166 (496)
T PRK03893 101 ACGFA-------------PGYWTLFIARLVIGMGMAGE-YGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSL 166 (496)
T ss_pred HHHHH-------------hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65543 12233334444444444432 33335677899999999999999999999999999999999
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHHHhccCC
Q 012646 393 LLCSFKFGIFLFFAGWVTIMTIFVYFFLPE 422 (459)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (459)
+.++.+|...+.+..+..+...+.....|+
T Consensus 167 l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~ 196 (496)
T PRK03893 167 VVPVWGWRALFFIGILPIIFALWLRKNLPE 196 (496)
T ss_pred HhccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 988888776665544444333333333443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=114.44 Aligned_cols=162 Identities=19% Similarity=0.199 Sum_probs=119.0
Q ss_pred chHHHHHhHH-HHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCC
Q 012646 247 GINSILFYAP-VLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPN 325 (459)
Q Consensus 247 ~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (459)
.........| .+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+..+..++.....+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-------- 82 (352)
T PF07690_consen 11 GFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-------- 82 (352)
T ss_dssp HHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh--------
Confidence 3344555666 6667799999999999999999999999999999999999999988888888884444421
Q ss_pred ccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 012646 326 QELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFF 405 (459)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (459)
.+.+..++...+.+.+.+.. .+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.++.++...+..
T Consensus 83 -----~~~~~~~~~~~l~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~ 156 (352)
T PF07690_consen 83 -----SNFWLLLIARFLLGIGSGFF-SPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLI 156 (352)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHH
T ss_pred -----hhHHHHhhhccccccccccc-cccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccccc
Confidence 12334444555555555433 344467889999999999999999999999999999999999888887655555
Q ss_pred HHHHHHHHHHH-HhccCC
Q 012646 406 AGWVTIMTIFV-YFFLPE 422 (459)
Q Consensus 406 ~~~~~~~~~~~-~~~~~~ 422 (459)
.++..+...++ ..+.++
T Consensus 157 ~~~~~~~~~il~~~~~~~ 174 (352)
T PF07690_consen 157 SAILSLIAAILFILFLPE 174 (352)
T ss_dssp HHHHHHHHHHHHHCCC--
T ss_pred ccchhhhhhhhHhhhhhh
Confidence 55555544443 344433
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.4e-11 Score=114.24 Aligned_cols=177 Identities=15% Similarity=0.146 Sum_probs=128.7
Q ss_pred HHHHHHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHH
Q 012646 233 LVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQV 312 (459)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 312 (459)
.+....+..+....-......-.|.+.+++|.+..+.++....+.++.....+..|+++||+|||+.+..+..+..++.+
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~ 86 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASL 86 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 34444555555555556677778999899999999999999999999999999999999999999999999888888877
Q ss_pred HHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceeccc-CCccccchhhHHHHHHHHHHHHHHHHHHH
Q 012646 313 IVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEI-FPLETRSAGQSITVAVNLFFTFVIAQIFL 391 (459)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~~~~~~~~ 391 (459)
..... ++.+..++.-.+.+.+.+.. .+.....+.+. .|+++|+++.|+......+|..++|.+.+
T Consensus 87 ~~~~a-------------~~~~~li~~r~l~G~g~~~~-~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg 152 (495)
T PRK14995 87 AAAFS-------------PTASWLIATRALLAIGAAMI-VPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGG 152 (495)
T ss_pred HHHHc-------------CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76653 22333444444455544433 23323334454 47789999999999999999999999999
Q ss_pred HHHhhchhHHHHHHHHHHHHH-HHHHHhccCCC
Q 012646 392 TLLCSFKFGIFLFFAGWVTIM-TIFVYFFLPET 423 (459)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 423 (459)
.+.++.+|...+.....+.++ ..+..+.+|+.
T Consensus 153 ~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 153 ILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred HhhccCChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999998887666554444333 33444455553
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.9e-11 Score=110.29 Aligned_cols=174 Identities=12% Similarity=0.073 Sum_probs=125.5
Q ss_pred HHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHH
Q 012646 237 IFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSI 316 (459)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 316 (459)
.....+.............|.+.+++|.+..+.++......++..++.++.|++.||+|||+.+..+..+..++.++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~ 87 (382)
T PRK10091 8 LALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTL 87 (382)
T ss_pred HHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444456666778888889999999999999999999999999999999999999999988888877766554
Q ss_pred HHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012646 317 ILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCS 396 (459)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 396 (459)
. ++.+..++...+.+.+.+... +.......|.+|+++|+.+.++......++..++|.+.+.+.+.
T Consensus 88 ~-------------~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~ 153 (382)
T PRK10091 88 S-------------SSYLMLAIGRLVSGFPHGAFF-GVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE 153 (382)
T ss_pred h-------------CcHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh
Confidence 3 223334444444444444332 33345667889999999999999999999999999999998888
Q ss_pred chhHHHHHHHHHHHHH-HHHHHhccCCCC
Q 012646 397 FKFGIFLFFAGWVTIM-TIFVYFFLPETK 424 (459)
Q Consensus 397 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 424 (459)
.+|...+...++..+. .+......|+.+
T Consensus 154 ~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 154 FSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 7876655555444333 333444566543
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-09 Score=100.93 Aligned_cols=323 Identities=12% Similarity=0.097 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhhhhhhccCcc
Q 012646 36 TSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTH 115 (459)
Q Consensus 36 ~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 115 (459)
.++.+....+++++.+.+.|+.|.|+.|+++...+..-.+..-+ +|-+.++..-.+.|+|.+..+..--.+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 77778888999999999999999999999999999888777644 45667788899999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhcccccc------chhH--------------HHHHhhHHHHHHHHHhhhccCCCh
Q 012646 116 LRGGLNMMFQLATTLGIFTANMINYGTQKLET------WGWR--------------LSLGLAAAPALMMTVGGILLPETP 175 (459)
Q Consensus 116 ~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~------~gwr--------------~~f~~~~~~~~~~~~~~~~~~es~ 175 (459)
.+.+..++..+....+.++|...-........ .+-+ ..+.+...+..+..+...+.|.+.
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~ 214 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD 214 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence 99999999999999999988766322211111 1111 111111111111222222233211
Q ss_pred hhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHhH
Q 012646 176 NSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYA 255 (459)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (459)
... +. +. . +....+..+..++....++++...................+.
T Consensus 215 -~~~------~~---------------------~~-~-~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iyp 264 (461)
T KOG3098|consen 215 -VVN------CK---------------------SS-S-ETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYP 264 (461)
T ss_pred -hhh------hh---------------------hh-c-cccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccc
Confidence 000 00 00 0 001111223333333333333333222221111111112222
Q ss_pred HHHH-H-hcCCCC-chhHHHHHHHHHHHHHHhHHHHHHHhh---cCCchhhhhhhHHHHHHHHHHHHHHhhhcC--CCcc
Q 012646 256 PVLF-Q-SMGFKG-DASLYSSAMTGAVLASSTLISIATVDK---LGRRALLISGGIQMITCQVIVSIILGLKFG--PNQE 327 (459)
Q Consensus 256 ~~~~-~-~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 327 (459)
..+. . ..+.+. ...+......+++.+++....+.+.+| +|+++.+.++..+..+..++.......... +.+.
T Consensus 265 t~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~ 344 (461)
T KOG3098|consen 265 TCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDS 344 (461)
T ss_pred hhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcc
Confidence 2121 1 222222 233455556677777777777777655 577888877777766666655544322111 1111
Q ss_pred cc---chhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 012646 328 LS---KSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFL 391 (459)
Q Consensus 328 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~ 391 (459)
.+ .+......++..+.+.+-+ ++....+.++...+ ++.|..+.++..+-..+++.++-...+
T Consensus 345 ~~~~~~~~~~~~~ii~~l~G~~D~-~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 345 PPLLFTPSYYLALIIGFLLGFGDA-CFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred cccccccchhHHHHHHHHHhhHHH-HHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 00 0112233333333343333 44445567777888 577888888888888877766555444
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.2e-11 Score=116.66 Aligned_cols=151 Identities=13% Similarity=0.008 Sum_probs=111.7
Q ss_pred ccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHH--HHHhhHHHHHHHHHHhhh
Q 012646 18 HAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALN--AAAANLAMLLTGRILLGV 95 (459)
Q Consensus 18 ~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~--~~~~~~~~l~~~r~l~G~ 95 (459)
+...++++|+|..+.++..+...++..++.+++|+++||+|||+.+.....+..++..+. ...++...+.+.+++.|+
T Consensus 282 p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 361 (467)
T PRK09556 282 PVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGF 361 (467)
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 334456789999999999999999999999999999999999988776555444433222 233566667788888886
Q ss_pred hhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHH-HHHHHHHHhhhccccc------------cchhHHHHHhhHHHHH
Q 012646 96 GIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTL-GIFTANMINYGTQKLE------------TWGWRLSLGLAAAPAL 162 (459)
Q Consensus 96 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~l~~~~~~~~------------~~gwr~~f~~~~~~~~ 162 (459)
+.............|.+|+++|+.+.|+.+....+ |..++|.+. +...+ ..+|+..|++.++..+
T Consensus 362 ~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~--G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~ 439 (467)
T PRK09556 362 LVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGL--GMIADPTKNGTPIFGYTLTGWAGTFAALDIAAI 439 (467)
T ss_pred HHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhH--HHHhcccccccccccccccChHHHHHHHHHHHH
Confidence 54433333345677999999999999999888886 768888773 33333 4579999998877777
Q ss_pred HHHHhhhc
Q 012646 163 MMTVGGIL 170 (459)
Q Consensus 163 ~~~~~~~~ 170 (459)
+..+..++
T Consensus 440 ~~~~~~~~ 447 (467)
T PRK09556 440 GCICLMAI 447 (467)
T ss_pred HHHHHHHH
Confidence 76555443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.3e-11 Score=111.61 Aligned_cols=142 Identities=13% Similarity=0.023 Sum_probs=125.3
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhh
Q 012646 24 YCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQA 103 (459)
Q Consensus 24 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 103 (459)
|.|.++.+.|.+.+...++..++.++.+++.||+|+|+.+.++.++..+..++.+++++.+.+++.+++.|+..+...+.
T Consensus 234 ~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~ 313 (382)
T TIGR00902 234 AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLA 313 (382)
T ss_pred HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCccchhHHHHHHH-HHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhh
Q 012646 104 VPLYLSEMAPTHLRGGLNMMFQ-LATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGI 169 (459)
Q Consensus 104 ~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~ 169 (459)
...++.+. |+++|++..++++ ...++|..+++.+ ++...+..|+ ..|++.+.++++..++..
T Consensus 314 ~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~--~G~l~~~~g~-~~~~~~~~~~~~~~~~~~ 376 (382)
T TIGR00902 314 AMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAF--AGFIYPTLGA-GTFVFMAIIAAAAFFLIP 376 (382)
T ss_pred HHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhccH-HHHHHHHHHHHHHHHHHH
Confidence 99999998 9999999999986 5688999999999 5566666676 667777777766554433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.6e-11 Score=114.31 Aligned_cols=164 Identities=16% Similarity=0.185 Sum_probs=111.5
Q ss_pred HHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccc
Q 012646 249 NSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQEL 328 (459)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (459)
.......|.+.+ .|.++.+.++......++..++.++.|++.||+|||+.+..+..+..++.+.......
T Consensus 44 ~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--------- 113 (438)
T TIGR00712 44 KNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPW--------- 113 (438)
T ss_pred ccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcccc---------
Confidence 334555666654 5999999999999999999999999999999999999888877777766555433210
Q ss_pred cchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHh-hchhHHHHHHHH
Q 012646 329 SKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLC-SFKFGIFLFFAG 407 (459)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~ 407 (459)
...+.+...+...+.+.+.+..+.+. ...+.|.+|+++|++++|+.+....+++.+++.+.+...+ ..+|...+...+
T Consensus 114 ~~~~~~~l~~~~~l~g~~~g~~~~~~-~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~ 192 (438)
T TIGR00712 114 ATSSIAIMFVLLFLNGWFQGMGWPPC-GRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPA 192 (438)
T ss_pred ccchHHHHHHHHHHHHHHhhcchHHH-HHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 00112222233333444444333333 4566799999999999999999999999999988776554 456666555544
Q ss_pred HH-HHHHHHHHhccCCC
Q 012646 408 WV-TIMTIFVYFFLPET 423 (459)
Q Consensus 408 ~~-~~~~~~~~~~~~~~ 423 (459)
+. .+..++.+++.+|+
T Consensus 193 ~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 193 ICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHHHHHHHHHhccCC
Confidence 44 34444555555553
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-10 Score=110.14 Aligned_cols=160 Identities=11% Similarity=0.012 Sum_probs=107.0
Q ss_pred chHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCc
Q 012646 247 GINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQ 326 (459)
Q Consensus 247 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (459)
.......+.|.+.+++|++..+.++......++..++.++.|+++||+|||+.+..+.+...++.++....
T Consensus 51 ~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--------- 121 (476)
T PLN00028 51 STFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV--------- 121 (476)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh---------
Confidence 33445556677888899999999998888889999999999999999999999888777766665544433
Q ss_pred cccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHh----h-----c
Q 012646 327 ELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLC----S-----F 397 (459)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~----~-----~ 397 (459)
.+.+...+..++.+.+.+. ..+. ..+++|.+|+++|+++.|+.+....+|+.+++.+.+.+.. . .
T Consensus 122 ----~s~~~l~~~r~l~G~~~~~-~~~~-~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 195 (476)
T PLN00028 122 ----SSATGFIAVRFFIGFSLAT-FVSC-QYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFT 195 (476)
T ss_pred ----cCHHHHHHHHHHHHHHHHh-hHHH-HHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 1122222333333333332 2232 3456899999999999999998888888877776655432 1 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccC
Q 012646 398 KFGIFLFFAGWVTIMTIFVYFFLP 421 (459)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~ 421 (459)
+|...+.+.+++.++..+..++.+
T Consensus 196 gWr~~f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 196 AWRIAFFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc
Confidence 565555555544444333333333
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-10 Score=108.05 Aligned_cols=161 Identities=12% Similarity=0.125 Sum_probs=115.1
Q ss_pred chHHHHHhHHHH-HHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCC
Q 012646 247 GINSILFYAPVL-FQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPN 325 (459)
Q Consensus 247 ~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (459)
+......+.+.+ .++.|++..+.++......+...+..++.|+++||+|||+.+..+.....++.+.+...
T Consensus 25 ~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~-------- 96 (400)
T PRK11646 25 GFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA-------- 96 (400)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh--------
Confidence 334444455544 45689999999999999999999999999999999999999999888888877766543
Q ss_pred ccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 012646 326 QELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFF 405 (459)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (459)
++.+...+...+.+.+.+. ..+...+++.|.+|+++|+++.|+.+....+|..++|.+.+.+. ..++...+.+
T Consensus 97 -----~~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~ 169 (400)
T PRK11646 97 -----HEPWLLWLSCILSGLGGTL-FDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCAT 169 (400)
T ss_pred -----ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHH
Confidence 2233333444444444332 33434566789999999999999999999999999999999988 5666555544
Q ss_pred HHHHHH-HHHHHHhccCC
Q 012646 406 AGWVTI-MTIFVYFFLPE 422 (459)
Q Consensus 406 ~~~~~~-~~~~~~~~~~~ 422 (459)
.++..+ ..++..+..|+
T Consensus 170 ~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 170 GAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHHHHHHhCCc
Confidence 444333 33333444454
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7e-11 Score=112.76 Aligned_cols=162 Identities=15% Similarity=0.177 Sum_probs=107.5
Q ss_pred HHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccc
Q 012646 251 ILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSK 330 (459)
Q Consensus 251 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (459)
+....|++.++ |++..+.++......++..++.++.|+++||+|||+.+..+.++..++.+.+..... ..
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~---------~~ 117 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW---------AT 117 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc---------cc
Confidence 45567777766 999999999999999999999999999999999999998888877777665554310 00
Q ss_pred hhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHH-HHHHhhchhHHHHHHHH-H
Q 012646 331 SFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIF-LTLLCSFKFGIFLFFAG-W 408 (459)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~-~ 408 (459)
.+.+...+...+.+.+.+....+. ...+.|.+|+++|+++.|+.+....+|+.+.+++. ..+....+|...+.+.+ .
T Consensus 118 ~~~~~~~~~~~l~gi~~g~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~ 196 (452)
T PRK11273 118 SSIAVMFVLLFLCGWFQGMGWPPC-GRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFA 196 (452)
T ss_pred ccHHHHHHHHHHHHHHHhccchHH-HHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 112233333344444444433333 35567889999999999999998888875544443 23333335554444433 3
Q ss_pred HHHHHHHHHhccCCC
Q 012646 409 VTIMTIFVYFFLPET 423 (459)
Q Consensus 409 ~~~~~~~~~~~~~~~ 423 (459)
..+..++..++++++
T Consensus 197 ~~~~~~l~~~~~~~~ 211 (452)
T PRK11273 197 AILVALFAFAMMRDT 211 (452)
T ss_pred HHHHHHHHHHHccCC
Confidence 344445555566654
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.1e-11 Score=116.72 Aligned_cols=174 Identities=13% Similarity=0.155 Sum_probs=127.1
Q ss_pred HHHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHH
Q 012646 236 AIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVS 315 (459)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 315 (459)
.+.+..+.............|.+.+++|.+..+.++......++..++.++.|++.||+|||+.+..+..+..++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 85 (485)
T TIGR00711 6 VLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCG 85 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence 33344444444556677778989889999999999999999999999999999999999999999988887777766554
Q ss_pred HHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012646 316 IILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLC 395 (459)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 395 (459)
.. ++.+..+....+.+.+.+. ..+....++.|.+|+++|+++.++......+|..++|.+.+.+.+
T Consensus 86 ~~-------------~~~~~l~~~~~~~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 151 (485)
T TIGR00711 86 VA-------------PNLELMIIFRVIQGFGGGP-LIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE 151 (485)
T ss_pred Cc-------------CCHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc
Confidence 32 2233334444444444443 334446788899999999999999999999999999999999998
Q ss_pred hchhHHHHHHHHHHHH-HHHHHHhccCCC
Q 012646 396 SFKFGIFLFFAGWVTI-MTIFVYFFLPET 423 (459)
Q Consensus 396 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 423 (459)
+.+|...+.......+ ..++..+..+++
T Consensus 152 ~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 152 NYHWRWIFLINVPIGIIVVVVAFFILPRD 180 (485)
T ss_pred CcCceehhhhhhHHHHHHHHHHHHHcCCc
Confidence 8887655554443333 333333445543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.9e-10 Score=108.54 Aligned_cols=168 Identities=14% Similarity=0.134 Sum_probs=115.9
Q ss_pred HhhhhcchHHHHHhHHHHHHhcCCCCch-----hHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHH
Q 012646 241 MFQILTGINSILFYAPVLFQSMGFKGDA-----SLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVS 315 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 315 (459)
.+...........+.|.+.+++|.+..+ .+.......+...++.++.|+++||+|||+.+..+.....++..++.
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 102 (408)
T PRK09874 23 CFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMG 102 (408)
T ss_pred HHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHH
Confidence 3334444555666788888888888655 37778888899999999999999999999998887777666665544
Q ss_pred HHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012646 316 IILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLC 395 (459)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 395 (459)
.. .+.+..++...+.+.+. +..+.......+..|+++|+.+.++.+....+|..++|.+.+.+.+
T Consensus 103 ~~-------------~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 167 (408)
T PRK09874 103 LA-------------QNIWQFLILRALLGLLG--GFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLAD 167 (408)
T ss_pred HH-------------hhHHHHHHHHHHHHHhh--hhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 12223333333333332 2234444566788999999999999999999999999999999988
Q ss_pred hchhHHHHHHHHHHHHH-HHHHHhccCCC
Q 012646 396 SFKFGIFLFFAGWVTIM-TIFVYFFLPET 423 (459)
Q Consensus 396 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 423 (459)
..++...+...++..+. .+...+..+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 168 SYGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 87776555554444433 33344445543
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-10 Score=108.05 Aligned_cols=162 Identities=15% Similarity=0.127 Sum_probs=114.5
Q ss_pred HHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccc
Q 012646 249 NSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQEL 328 (459)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (459)
.......|.+.+++|.++.+.++......++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 25 ~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~----------- 93 (394)
T PRK11652 25 TIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA----------- 93 (394)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----------
Confidence 334445677788899999999999999999999999999999999999999888877776666554432
Q ss_pred cchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 012646 329 SKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGW 408 (459)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (459)
++.+..++...+.+.+.+. ..+....+..|.++.+.++.+.+..+....++..++|.+.+.+.+..+|...+.+.++
T Consensus 94 --~~~~~l~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~ 170 (394)
T PRK11652 94 --HSLTVLIAASAIQGLGTGV-GGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLL 170 (394)
T ss_pred --ccHHHHHHHHHHHHhhhhH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 1122233333333333332 2233345567888888999999999999999999999999998887777655555444
Q ss_pred HH-HHHHHHHhccCCCC
Q 012646 409 VT-IMTIFVYFFLPETK 424 (459)
Q Consensus 409 ~~-~~~~~~~~~~~~~~ 424 (459)
.. +...+..++.||++
T Consensus 171 ~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 171 LGAGVTFSMARWMPETR 187 (394)
T ss_pred HHHHHHHHHHHhCCccC
Confidence 33 33344445566643
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-10 Score=109.37 Aligned_cols=157 Identities=11% Similarity=0.096 Sum_probs=114.6
Q ss_pred hHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhh
Q 012646 254 YAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFS 333 (459)
Q Consensus 254 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (459)
-.|.+.+++|.+..+.+.....+.++..++.++.|+++||+|||+.+..+..+..++.+..... ++.
T Consensus 38 ~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-------------~~~ 104 (413)
T PRK15403 38 GIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT-------------TSM 104 (413)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-------------CCH
Confidence 3455666799999999999999999999999999999999999999988877777666555442 222
Q ss_pred hHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 012646 334 ILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMT 413 (459)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (459)
+..++.-++.+.+.+. ..+.......|.+|+++++++.++.+....++..++|.+.+.+.++.+|...+...++..++.
T Consensus 105 ~~l~~~r~l~Gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~ 183 (413)
T PRK15403 105 TQFLIARFIQGTSICF-IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIA 183 (413)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 3333333444443332 233345667899999999999999999999999999999999888878766666555554444
Q ss_pred HHH-HhccCCCC
Q 012646 414 IFV-YFFLPETK 424 (459)
Q Consensus 414 ~~~-~~~~~~~~ 424 (459)
.+. .+.+||++
T Consensus 184 ~~~~~~~lp~~~ 195 (413)
T PRK15403 184 FVGLLLAMPETV 195 (413)
T ss_pred HHHHHHhCCCCc
Confidence 433 44566654
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-10 Score=107.20 Aligned_cols=162 Identities=10% Similarity=-0.036 Sum_probs=114.6
Q ss_pred hHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCcc
Q 012646 248 INSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQE 327 (459)
Q Consensus 248 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (459)
...+....|.+.+++|.+..+.++..+...++..++.+..|++.||+|||+.+.........+. .....
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~-~~~~~---------- 75 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAA-GRLLD---------- 75 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH-HHHHH----------
Confidence 3456667788888899999999999999999999999999999999998887654433332221 11111
Q ss_pred ccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH-H
Q 012646 328 LSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFF-A 406 (459)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~ 406 (459)
..+....++.-.+.+.+.+. ..+. ....+|.+|+++|+++.++.+....+|..+++.+.+.+.++.+|...+.. +
T Consensus 76 --~~~~~~l~~~R~l~G~g~~~-~~~~-~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~ 151 (368)
T TIGR00903 76 --PFNYEWLLACQLLAALGQPF-LLNA-FAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIA 151 (368)
T ss_pred --hccHHHHHHHHHHHHhHhHH-HHHH-HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 01233344444444444442 2222 34457999999999999999999999999999999999988888776666 4
Q ss_pred HHHHHHHHHHHhccCCCC
Q 012646 407 GWVTIMTIFVYFFLPETK 424 (459)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~ 424 (459)
.+..+..++.++.+||.+
T Consensus 152 ~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 152 AVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 444455555666677654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-10 Score=109.75 Aligned_cols=168 Identities=14% Similarity=0.172 Sum_probs=119.9
Q ss_pred HhhhhcchHHHHHhHHHHHH-hcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhh-cCCchhhhhhhHHHHHHHHHHHHHH
Q 012646 241 MFQILTGINSILFYAPVLFQ-SMGFKGDASLYSSAMTGAVLASSTLISIATVDK-LGRRALLISGGIQMITCQVIVSIIL 318 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (459)
.+..-..++....+.+.|++ ++|++..++.+.............+++|+++|| +|||+.+..+.++..++.+.+....
T Consensus 23 ~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~ 102 (489)
T PRK10207 23 ELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL 102 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444455566666666655 599999888888888887788888899999999 9999999999999988887776531
Q ss_pred hhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCcc--ccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012646 319 GLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLE--TRSAGQSITVAVNLFFTFVIAQIFLTLLCS 396 (459)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 396 (459)
.......+...+.+.+.+. ..|...+++.|.+|++ +|+.+.++.....++|..++|.+.+++.++
T Consensus 103 ------------~~~~ll~~~~~l~~ig~g~-~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~ 169 (489)
T PRK10207 103 ------------LKPDLIFIALGTIAVGNGL-FKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK 169 (489)
T ss_pred ------------cchhHHHHHHHHHHhcccc-ccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111222333333333333 3344467888999877 457789999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhccC
Q 012646 397 FKFGIFLFFAGWVTIMTIFVYFFLP 421 (459)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (459)
.+|...+....+..+.+++.+...+
T Consensus 170 ~gw~~~F~i~~i~~~~~~~~~~~~~ 194 (489)
T PRK10207 170 FGYSVTYNLCGAGLIIALLVYFACR 194 (489)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHcc
Confidence 8887766666555555554444443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-11 Score=117.96 Aligned_cols=162 Identities=17% Similarity=0.075 Sum_probs=115.5
Q ss_pred HHHhHHHHHHhcCCC--------CchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhc
Q 012646 251 ILFYAPVLFQSMGFK--------GDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKF 322 (459)
Q Consensus 251 ~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (459)
.....+....+.+.+ ..+.++......++..++.++.|+++||+|||+.+..+..+..++.++.....
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~---- 122 (481)
T TIGR00879 47 IGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA---- 122 (481)
T ss_pred hhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc----
Confidence 333344444444444 78899999999999999999999999999999999888888777766664431
Q ss_pred CCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHH---HHHHhhchh
Q 012646 323 GPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIF---LTLLCSFKF 399 (459)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~---~~~~~~~~~ 399 (459)
.....+..++...+.+.+.+.. .+....++.|.+|+++|+++.++.+....+|..+++.+. +...+..+|
T Consensus 123 ------~~~~~~~~~~~r~l~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w 195 (481)
T TIGR00879 123 ------FALSVEMLIVGRVLLGIGVGIA-SALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGW 195 (481)
T ss_pred ------cccchHHHHHHHHHHHhhhhHH-HhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccH
Confidence 1111223444445555554433 344467889999999999999999999999999999988 554455667
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCC
Q 012646 400 GIFLFFAGWVTIMTIFVYFFLPET 423 (459)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~ 423 (459)
...+.+.++..+..++..++++|+
T Consensus 196 ~~~f~~~~~~~~~~~~~~~~l~~~ 219 (481)
T TIGR00879 196 RIPLGLQLIPAGLLFLGLFFLPES 219 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 666666665556565666666664
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.8e-10 Score=107.06 Aligned_cols=155 Identities=12% Similarity=0.057 Sum_probs=110.3
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhh
Q 012646 255 APVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSI 334 (459)
Q Consensus 255 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (459)
.|.+.+++|.++.+.++......++..++.++.|+++||+|||+.+..+.....++.+..... .+.+
T Consensus 29 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------------~~~~ 95 (401)
T PRK11043 29 FKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV-------------ESAA 95 (401)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-------------cCHH
Confidence 344566799999999999999999999999999999999999999988877766665554432 1122
Q ss_pred HHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 012646 335 LVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTI 414 (459)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (459)
...+...+.+.+.+.. .+.......|.+|+++++...+..+....++..++|.+.+.+.++.++...+....+..+...
T Consensus 96 ~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~ 174 (401)
T PRK11043 96 QLLVLRFVQAVGVCSA-AVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLI 174 (401)
T ss_pred HHHHHHHHHHhhhHHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 2333333333333222 223345667899988888899998888899999999999999988887766555555544444
Q ss_pred HHHhccCCC
Q 012646 415 FVYFFLPET 423 (459)
Q Consensus 415 ~~~~~~~~~ 423 (459)
+..+..++.
T Consensus 175 ~~~~~~~~~ 183 (401)
T PRK11043 175 LPTLRLKPS 183 (401)
T ss_pred HHHHHcCCC
Confidence 444444443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.6e-11 Score=110.46 Aligned_cols=160 Identities=19% Similarity=0.217 Sum_probs=118.7
Q ss_pred HHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCcccc
Q 012646 250 SILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELS 329 (459)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (459)
...-..|.+.+++|.++.+.+.......++..++.++.|++.||+|||+.+..+..+..++.......
T Consensus 9 ~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~------------ 76 (377)
T PRK11102 9 MYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA------------ 76 (377)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH------------
Confidence 34455677778899999999999999999999999999999999999999998888877777666543
Q ss_pred chhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 012646 330 KSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWV 409 (459)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (459)
.+.+.......+.+.+.+.. .+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..++...+...+..
T Consensus 77 -~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 154 (377)
T PRK11102 77 -QTIDQLIYMRFLHGLAAAAA-SVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALA 154 (377)
T ss_pred -ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 12233333344444444433 3333567789999999999999999999999999999999998887776555544443
Q ss_pred H-HHHHHHHhccCCC
Q 012646 410 T-IMTIFVYFFLPET 423 (459)
Q Consensus 410 ~-~~~~~~~~~~~~~ 423 (459)
. +...+..+..+|+
T Consensus 155 ~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 155 AILAAALVFFFIPET 169 (377)
T ss_pred HHHHHHHHHHhCCcc
Confidence 3 3334444555554
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.6e-10 Score=109.37 Aligned_cols=152 Identities=20% Similarity=0.206 Sum_probs=107.7
Q ss_pred CCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHH
Q 012646 265 KGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFV 344 (459)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (459)
+..+.+++.....++.+++.++.|++.||+|||+.+..+.++..++.++...... . .........++.-.+.+
T Consensus 54 ~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~------~-~~~~~~~~~~~~r~l~G 126 (502)
T TIGR00887 54 PSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPG------S-SPKSVMATLCFWRFWLG 126 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccC------c-ccchHHHHHHHHHHHHH
Confidence 3446678889999999999999999999999999998888777777665544210 0 00001233444445555
Q ss_pred HHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHh-----------------------hchhHH
Q 012646 345 LAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLC-----------------------SFKFGI 401 (459)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~-----------------------~~~~~~ 401 (459)
.+.+... +....+++|.+|++.|+++.++.+....+|..+++.+...+.. ..+|..
T Consensus 127 ~~~g~~~-~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~ 205 (502)
T TIGR00887 127 VGIGGDY-PLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRI 205 (502)
T ss_pred HHHhhhh-HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHH
Confidence 5555443 3446888999999999999999999999999888888765432 124666
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC
Q 012646 402 FLFFAGWVTIMTIFVYFFLPETK 424 (459)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~ 424 (459)
.+.+.++..+...+..+++||+.
T Consensus 206 ~~~~~~ip~~i~~~~~~~lpESp 228 (502)
T TIGR00887 206 LIGFGAVPALLALYFRLTIPETP 228 (502)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCH
Confidence 66666666666666667788864
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-10 Score=110.62 Aligned_cols=154 Identities=12% Similarity=0.013 Sum_probs=111.2
Q ss_pred CCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHH----hhHHHHHHHHHHhhhhh
Q 012646 22 NNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAA----ANLAMLLTGRILLGVGI 97 (459)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~ 97 (459)
++++|.+......+.....+...++.++.|+++||+|||+++..+.++..++.+..... ++.+.+++..++.|++.
T Consensus 278 ~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 357 (438)
T PRK09952 278 TQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAH 357 (438)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 45567777766666666667778889999999999999999988877666554433221 23444455667778888
Q ss_pred hhhhhhhhhhhhhccCccchhHHHHHHH-HHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccCCCh
Q 012646 98 GFGNQAVPLYLSEMAPTHLRGGLNMMFQ-LATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETP 175 (459)
Q Consensus 98 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~es~ 175 (459)
+...+...+++.|.+|++.|+...++.. .+..+|..++|.+..........+|+..+...++..++..+..+.++|+.
T Consensus 358 ~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~ 436 (438)
T PRK09952 358 DMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDNQ 436 (438)
T ss_pred HHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHccccc
Confidence 8888888999999999999988888854 44558888888884333222233588888888777777766666666643
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.8e-10 Score=105.08 Aligned_cols=150 Identities=13% Similarity=0.028 Sum_probs=103.2
Q ss_pred HHHHHHHHHhhhhcchHHHHHhHHHHHH-hcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHH
Q 012646 233 LVMAIFMPMFQILTGINSILFYAPVLFQ-SMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQ 311 (459)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 311 (459)
.+....+.....+..........+.+.+ ++|++..+.++..++..++..+.++..|++.||+|.|+....+..+..+..
T Consensus 35 ~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~ 114 (462)
T PRK15034 35 NLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPC 114 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 3444555555555555555555566555 599999999999999999999999999999999999999988888877776
Q ss_pred HHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 012646 312 VIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFL 391 (459)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~ 391 (459)
+...+.... ..++.+..++...+.+.+ +..+ +.....+++.+|+++||++.|+....+++|..+++.+.+
T Consensus 115 ~~~~~a~~~--------~~~s~~~lli~r~l~Gig-g~~f-~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p 184 (462)
T PRK15034 115 VWLGIAVQN--------PNTPFGIFIVIALLCGFA-GANF-ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAP 184 (462)
T ss_pred HHHHHHHcc--------cCCCHHHHHHHHHHHHHH-HHhH-HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 655543100 001233334444444443 3333 334567789999999999999997777777766666554
Q ss_pred H
Q 012646 392 T 392 (459)
Q Consensus 392 ~ 392 (459)
.
T Consensus 185 ~ 185 (462)
T PRK15034 185 L 185 (462)
T ss_pred H
Confidence 4
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.8e-10 Score=106.38 Aligned_cols=155 Identities=10% Similarity=0.100 Sum_probs=112.5
Q ss_pred HHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccc
Q 012646 251 ILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSK 330 (459)
Q Consensus 251 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (459)
.....+...++.+.++.+.++......+...+..++.|++.||+|||+++..+..+..++.+.+....
T Consensus 22 ~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~------------ 89 (393)
T PRK11195 22 LLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI------------ 89 (393)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH------------
Confidence 44444555677888888899999999999999999999999999999999999888777665543321
Q ss_pred hhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 012646 331 SFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVT 410 (459)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (459)
+ . ++...+.+.+.+ ...|...+++.|.+|+++|+++.|+.+....++..++|.+.|.+.+.. +...+...+.+.
T Consensus 90 ~-~---~~~r~l~G~~~a-~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~ 163 (393)
T PRK11195 90 H-P---LLAYGLVGIGAA-AYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIY 163 (393)
T ss_pred H-H---HHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 1 1 222233344333 445565788899999999999999999999999999999999998864 333333333333
Q ss_pred HHHHHHHhccCCC
Q 012646 411 IMTIFVYFFLPET 423 (459)
Q Consensus 411 ~~~~~~~~~~~~~ 423 (459)
+.+.+....+|+.
T Consensus 164 ~~~~~~~~~l~~~ 176 (393)
T PRK11195 164 LLAALFNLFIPRL 176 (393)
T ss_pred HHHHHHHhcCCCC
Confidence 4444455566654
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-10 Score=106.79 Aligned_cols=150 Identities=7% Similarity=-0.096 Sum_probs=113.3
Q ss_pred HHHHHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHH
Q 012646 234 VMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVI 313 (459)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 313 (459)
++......+.............|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+.....++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~ 87 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAG 87 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555556677788899999999999999999999999999999999999999999999999888887777666
Q ss_pred HHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 012646 314 VSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTL 393 (459)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 393 (459)
.... ++.+..++...+.+.+.+.. .+.......+..++++|+++.+..+....+|..++|.+.+.+
T Consensus 88 ~~~~-------------~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l 153 (381)
T PRK03633 88 LGLM-------------VGFWSWLAWRFVAGIGCAMI-WVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKV 153 (381)
T ss_pred HHHh-------------ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5543 22333444444444444433 232234445778888999999999999999999999999987
Q ss_pred Hhhc
Q 012646 394 LCSF 397 (459)
Q Consensus 394 ~~~~ 397 (459)
.+..
T Consensus 154 ~~~~ 157 (381)
T PRK03633 154 STEL 157 (381)
T ss_pred cccc
Confidence 6653
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-10 Score=108.45 Aligned_cols=164 Identities=12% Similarity=0.090 Sum_probs=115.3
Q ss_pred chHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCc
Q 012646 247 GINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQ 326 (459)
Q Consensus 247 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (459)
....+....|.+.+++|.+..+.+.......++..++.++.|+++||+|||+.+..+.....++.......
T Consensus 28 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--------- 98 (406)
T PRK15402 28 ANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA--------- 98 (406)
T ss_pred hhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH---------
Confidence 33444445566778899999999999999999999999999999999999999988877777766655443
Q ss_pred cccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 012646 327 ELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFA 406 (459)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (459)
++.+..+....+.+.+.+.. .+.....+.|.+|++.|.+..++......++..++|.+.+.+.++.+|...+.+.
T Consensus 99 ----~~~~~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~ 173 (406)
T PRK15402 99 ----QSIEQFTLLRFLQGIGLCFI-GAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF 173 (406)
T ss_pred ----ccHHHHHHHHHHHHhHhhhH-HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence 11222333333333333322 2344566789999999999999988888889999999999988877776555554
Q ss_pred HHHHHHH-HHHHhccCCCC
Q 012646 407 GWVTIMT-IFVYFFLPETK 424 (459)
Q Consensus 407 ~~~~~~~-~~~~~~~~~~~ 424 (459)
+++.+.. ...+...||++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 174 AALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHHHHHHHHHhCCCCC
Confidence 4444333 33344556543
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-10 Score=105.96 Aligned_cols=143 Identities=13% Similarity=0.032 Sum_probs=104.8
Q ss_pred HHHhhhhcchHHHHHhHHH-HHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHH
Q 012646 239 MPMFQILTGINSILFYAPV-LFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSII 317 (459)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (459)
+..+...........+.|. +.+++|++..+.++......++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~ 87 (366)
T TIGR00886 8 FGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA 87 (366)
T ss_pred HHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455667777785 556799999999999999999999999999999999999999999888888877666543
Q ss_pred HhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012646 318 LGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLC 395 (459)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 395 (459)
. .+.+..++...+.+.+.+ ...+ ...++.|.+|+++|+++.++......+|..+++.+.+.+..
T Consensus 88 ~------------~~~~~~~~~~~~~g~~~~-~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 88 V------------QSYSVLLLLRLFIGIAGG-SFAS-CMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred h------------hhHHHHHHHHHHHHHhch-hhHh-HHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1 023333333333343322 2333 35677899999999999999998888888888777766654
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.3e-10 Score=101.93 Aligned_cols=160 Identities=10% Similarity=0.118 Sum_probs=126.7
Q ss_pred HHHHHhHHHHHHhcCCCCch-hHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCcc
Q 012646 249 NSILFYAPVLFQSMGFKGDA-SLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQE 327 (459)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (459)
....+..|++.+++|++..+ .+.+......+..+..+..|+++||+|.|+++..+.+...+..++..+.
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa---------- 112 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG---------- 112 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH----------
Confidence 45666678887889999999 9999999999999999999999999999999999888888887777764
Q ss_pred ccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchh---HHHHH
Q 012646 328 LSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKF---GIFLF 404 (459)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~ 404 (459)
.+.....+.-++++.+-+..+ + ...++...+|+++|+++.|+.+....+|.++++++.+. ....+| .....
T Consensus 113 ---~Sl~~L~i~R~llGvaEA~~~-A-~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~ 186 (511)
T TIGR00806 113 ---TSVWHMQLMEVFYSVTMAARI-A-YSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNI 186 (511)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHH
Confidence 224455566666666666555 3 36778899999999999999999999999999999999 445554 33344
Q ss_pred HHHHHHHHHHHHHhccCCCC
Q 012646 405 FAGWVTIMTIFVYFFLPETK 424 (459)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~ 424 (459)
+.....++++++.+++|..+
T Consensus 187 Isl~s~~~a~~~a~~LP~~~ 206 (511)
T TIGR00806 187 ISLVFMTFSVFLALFLKRPK 206 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCc
Confidence 55555566677777777443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.4e-10 Score=107.90 Aligned_cols=160 Identities=12% Similarity=0.032 Sum_probs=107.0
Q ss_pred CCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHH
Q 012646 263 GFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICL 342 (459)
Q Consensus 263 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (459)
+.+..+.++..+...++..++.++.|+++||+|||+++..+..+..++.+.......... .....+.......++.-++
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~R~l 129 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFT-SIGPDNTGYVPEFVIYRII 129 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccc-cccccchhHHHHHHHHHHH
Confidence 778888999999999999999999999999999999999988887776655543210000 0000000111222333344
Q ss_pred HHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH--------hhchhHHHHHHHHHHHHHHH
Q 012646 343 FVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLL--------CSFKFGIFLFFAGWVTIMTI 414 (459)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 414 (459)
.+.+.+.. .+...++++|.+|+++|+.+.++.+....+|..+++.+.+.+. +..+|...+...++..++..
T Consensus 130 ~G~~~g~~-~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~ 208 (479)
T PRK10077 130 GGIGVGLA-SMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFL 208 (479)
T ss_pred HhhhHhHH-hhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHH
Confidence 44444433 3444678899999999999999999988899888876655443 23456655555555555555
Q ss_pred HHHhccCCCC
Q 012646 415 FVYFFLPETK 424 (459)
Q Consensus 415 ~~~~~~~~~~ 424 (459)
+..+++||+.
T Consensus 209 ~~~~~l~~s~ 218 (479)
T PRK10077 209 MLLYFVPETP 218 (479)
T ss_pred HHHHcCCCCc
Confidence 5566677654
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.7e-11 Score=114.02 Aligned_cols=146 Identities=15% Similarity=0.037 Sum_probs=107.2
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHH
Q 012646 261 SMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVI 340 (459)
Q Consensus 261 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (459)
+++++..+.+.+.....++..++.++.|++.||+|+|+.+..+.++..++.++..... ....+..++.-
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~r 138 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA-----------GGGIALVVFCR 138 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH-----------HcCchHHHHHH
Confidence 4678888899999999999999999999999999999999888777666655543321 01122333333
Q ss_pred HHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHh
Q 012646 341 CLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSF-KFGIFLFFAGWVTIMTIFVYF 418 (459)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 418 (459)
++.+.+.+ ...+....+++|.+|+++|+++.|+.+....+|..+++.+.+.+.+.. +|...+.+.++..+...++++
T Consensus 139 ~~~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~ 216 (465)
T TIGR00894 139 VIQGLAQG-SVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWF 216 (465)
T ss_pred HHHHHhcc-cchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHH
Confidence 44444444 334444678899999999999999999999999999999999998874 776655555554444443333
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.5e-10 Score=106.34 Aligned_cols=143 Identities=11% Similarity=-0.040 Sum_probs=101.4
Q ss_pred chHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCc
Q 012646 247 GINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQ 326 (459)
Q Consensus 247 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (459)
.......+.+.+.+++|.++.+.+.......++..++.++.|++.||+|||+.+..+..+..++.........
T Consensus 28 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~------- 100 (402)
T TIGR00897 28 GDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGL------- 100 (402)
T ss_pred hhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 3344455666677889999999999999999999999999999999999999999888877776554322110
Q ss_pred cccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHH-HHHHHHHHHHHhhchh
Q 012646 327 ELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFT-FVIAQIFLTLLCSFKF 399 (459)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~~~~~~~~~~~~~~~~ 399 (459)
...+.+..+....+.+.+.+.. .+.......+.+|+++|++++|+.+....+|. .++|.+.+.+.+..++
T Consensus 101 --~~~~~~~l~~~~~i~G~g~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~ 171 (402)
T TIGR00897 101 --GHANYPLILLFYGIRGLGYPLF-AYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGE 171 (402)
T ss_pred --cCccHHHHHHHHHHHHcchHHH-HhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch
Confidence 0112222233333333333322 22223455688899999999999999999886 5788888888877664
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3e-10 Score=101.02 Aligned_cols=176 Identities=11% Similarity=0.003 Sum_probs=124.2
Q ss_pred HHHHHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHH
Q 012646 234 VMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVI 313 (459)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 313 (459)
++...++....+.....+....+.+-+++|+|+.|.+++..+..+.+.+.++..|.+.||+|.|+....+.++..+-.+.
T Consensus 16 L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~ 95 (417)
T COG2223 16 LWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLG 95 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHH
Confidence 34444444444445555666666666779999999999999999999999999999999999999999888888877777
Q ss_pred HHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 012646 314 VSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTL 393 (459)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 393 (459)
+.+... ..+.+..+++..+.+ .+.+...+....+++.+|+|++|++.|++. .+++|..+...+.+.+
T Consensus 96 ~~~a~~----------~~~~~~ll~~gll~G--~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v 162 (417)
T COG2223 96 LAFAVT----------YPSTWQLLVIGLLLG--LAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLV 162 (417)
T ss_pred HHHHcc----------CCchHHHHHHHHHHh--cccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHH
Confidence 766531 111123333333222 222334455678899999999999999999 9999999999999988
Q ss_pred Hhhch---hHHHHHHHH-HHHHHHHHHHhccCC
Q 012646 394 LCSFK---FGIFLFFAG-WVTIMTIFVYFFLPE 422 (459)
Q Consensus 394 ~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~ 422 (459)
....+ +.....+.. ...+..+..++..++
T Consensus 163 ~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 163 AVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 88877 544433333 333444445554443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.23 E-value=5e-10 Score=105.05 Aligned_cols=140 Identities=10% Similarity=-0.026 Sum_probs=107.4
Q ss_pred hhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcC
Q 012646 244 ILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFG 323 (459)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (459)
............|.+.+++|.+..+.++......++..++++..+++.||+|||+.+..+..+..++..+.....
T Consensus 15 ~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~----- 89 (410)
T TIGR00885 15 WGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAA----- 89 (410)
T ss_pred HHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH-----
Confidence 333344555677888888999999999999999999999999999999999999999999988888876654321
Q ss_pred CCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 012646 324 PNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLL 394 (459)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 394 (459)
..++.+..+...++.+.+.+....+. ..++.+..|+++|++..++.+....+|..++|.+.+.+.
T Consensus 90 -----~~~~~~~~l~~~~l~G~g~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 90 -----EIMNYTLFLVGLFILTAGLGFLETAA-NPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred -----hhccHHHHHHHHHHHHhhHHHHHhhh-hHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01223334444555555555444433 456678889999999999999999999999999988775
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.21 E-value=7e-10 Score=106.61 Aligned_cols=151 Identities=13% Similarity=0.091 Sum_probs=116.1
Q ss_pred CCcccCCchhhHHHHH-HHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHH---HHH-hhHHHHHHHHHHhhhh
Q 012646 22 NNYCKYDNQGLAAFTS-SLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALN---AAA-ANLAMLLTGRILLGVG 96 (459)
Q Consensus 22 ~~~~~~s~~~~~~~~s-~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~l~G~~ 96 (459)
.+++|++..+.++... ...++..++.++.|+++||+|+|+.+..+.++.+++.+.. +.. ++.+.+.+.-++..+.
T Consensus 250 ~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~ 329 (491)
T PRK11010 250 IRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLC 329 (491)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3457999999999984 6668999999999999999999988877666555544332 232 3555555566666666
Q ss_pred hhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccCCC
Q 012646 97 IGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPET 174 (459)
Q Consensus 97 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~es 174 (459)
.+...+...++..+..+++.+++..++.+...++|..+++.+ .+...+..||+..|.+.++.+++..+...+++++
T Consensus 330 ~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~--~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 330 GGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPV--AGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666778889999999999999999999999998888777 4555566789999999998888877766665543
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.2e-10 Score=105.87 Aligned_cols=164 Identities=13% Similarity=0.073 Sum_probs=110.4
Q ss_pred HHHHHhhhhcchHHHHHhHHHHH-HhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhh-cCCchhhhhhhHHHHHHHHHH
Q 012646 237 IFMPMFQILTGINSILFYAPVLF-QSMGFKGDASLYSSAMTGAVLASSTLISIATVDK-LGRRALLISGGIQMITCQVIV 314 (459)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~ 314 (459)
.....++....+.....+.+.++ +++|++..+++..............+++|++.|| +|||+.+..+..+..++..++
T Consensus 26 ~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~ 105 (500)
T PRK09584 26 IFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALV 105 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 33334444445566666777776 5599998888777766655555556789999999 599999999988888776655
Q ss_pred HHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccc--cchhhHHHHHHHHHHHHHHHHHHHH
Q 012646 315 SIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLET--RSAGQSITVAVNLFFTFVIAQIFLT 392 (459)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~~~ 392 (459)
.... +......+...+.+.+.+. ..+....+..|.+|++. |..+.++.+...++|..++|.+.++
T Consensus 106 ~~~~------------~~~~~l~~~~~l~gig~g~-~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~ 172 (500)
T PRK09584 106 AWSG------------HDAGIVYMGMATIAVGNGL-FKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPW 172 (500)
T ss_pred HHhc------------ccHHHHHHHHHHHHHhhhc-ccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 5421 1122222333334444443 33444567789997643 4567888899999999999999999
Q ss_pred HHhhchhHHHHHHHHHHHHHH
Q 012646 393 LLCSFKFGIFLFFAGWVTIMT 413 (459)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~ 413 (459)
+.++.+|...+...++..+.+
T Consensus 173 l~~~~g~~~~F~i~~i~~~i~ 193 (500)
T PRK09584 173 LAAKYGWSVAFALSVVGMLIT 193 (500)
T ss_pred HHHhhCHHHHHHHHHHHHHHH
Confidence 999888876666655443333
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-09 Score=102.46 Aligned_cols=140 Identities=14% Similarity=-0.014 Sum_probs=110.3
Q ss_pred HHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccc
Q 012646 249 NSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQEL 328 (459)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (459)
.......|.+.+++|.+..+.++..+...++..++.+..|++.||+|||+++..+..+..++.+...+.
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a----------- 94 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY----------- 94 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC-----------
Confidence 445667788888899999999999999999999999999999999999999999999999998877764
Q ss_pred cchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHH
Q 012646 329 SKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSF-KFGIFL 403 (459)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~ 403 (459)
++.+..+..-.+.+.+.+.... ....++.+.+| ++|+.++|........|..+++.+.+.+.++. +|...+
T Consensus 95 --~~~~~ll~~r~l~Gig~~~~~~-~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~ 166 (393)
T PRK09705 95 --PQSALLLSSALLGGVGIGIIQA-VMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTL 166 (393)
T ss_pred --cchHHHHHHHHHHHhHHHHHhh-hhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 2233344445555555554333 33466678887 77999999999999999999999999888765 554433
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-10 Score=109.75 Aligned_cols=140 Identities=18% Similarity=0.093 Sum_probs=109.0
Q ss_pred cCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHH--HHHHHH--hhHHHHHHHHHHhhhh
Q 012646 21 ENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGA--ALNAAA--ANLAMLLTGRILLGVG 96 (459)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~--~~~~~~--~~~~~l~~~r~l~G~~ 96 (459)
.+++++.++.+.+...+...++..++.++.|+++||+|||+.+..+..+..+.. +...+. ++.+.+.+..++.|++
T Consensus 246 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 325 (394)
T TIGR00883 246 LTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALI 325 (394)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 345678899999999999999999999999999999999998776555444333 222222 4667777888999999
Q ss_pred hhhhhhhhhhhhhhccCccchhHHHHH-HHHHHHHHHHHHHHHhhhccccccch-hHHHHHhhHHHHH
Q 012646 97 IGFGNQAVPLYLSEMAPTHLRGGLNMM-FQLATTLGIFTANMINYGTQKLETWG-WRLSLGLAAAPAL 162 (459)
Q Consensus 97 ~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~~~~~~~~g-wr~~f~~~~~~~~ 162 (459)
.+...+...+++.|.+|+++|+++.++ ...+..+|..++|.+ .+...+..| |++.++......+
T Consensus 326 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~--~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 326 GGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYI--AAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHH--HHHHHHHcCcchhHHHHHHHHHH
Confidence 888999999999999999999999987 456667888899988 455555556 8887776665444
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.16 E-value=5e-10 Score=106.93 Aligned_cols=149 Identities=15% Similarity=0.204 Sum_probs=132.4
Q ss_pred cccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q 012646 17 KHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVG 96 (459)
Q Consensus 17 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 96 (459)
.+...++++|.+....|++.+++.+|..+|+++.+++.+|+++++.+..+.++++++.+..+++++.+..++.-++.|++
T Consensus 241 lPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~ 320 (524)
T PF05977_consen 241 LPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAA 320 (524)
T ss_pred hhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 44445667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHh
Q 012646 97 IGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVG 167 (459)
Q Consensus 97 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~ 167 (459)
.....+...+.+.+..|++.|||+++++++....+..+|..+ .+...+..|-+..+.+.++..++..++
T Consensus 321 ~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll--~G~la~~~g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 321 WIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLL--WGFLADHFGVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 999888889999999999999999999999999999999998 666677778888888877665555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.6e-08 Score=88.89 Aligned_cols=344 Identities=12% Similarity=0.041 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHH--------h-----h--HHHHHHHHHHhhhhh
Q 012646 33 AAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAA--------A-----N--LAMLLTGRILLGVGI 97 (459)
Q Consensus 33 ~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~--------~-----~--~~~l~~~r~l~G~~~ 97 (459)
+...-.-.+...++++..|.+.||..|+++...+.+..-++..+.+.. + + ...+++.-.+.|.-.
T Consensus 41 siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 120 (432)
T PF06963_consen 41 SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIE 120 (432)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHH
Confidence 344444456667888999999999999999888766654443332211 1 0 111222222222211
Q ss_pred hh-hhhhhhhhhhhcc------CccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhh-h
Q 012646 98 GF-GNQAVPLYLSEMA------PTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGG-I 169 (459)
Q Consensus 98 ~~-~~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~ 169 (459)
.. ......+.=.||. +++.+.+..+...-.--+.-+++|++ .+......+.+....+.+...++..+.= +
T Consensus 121 ~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~--vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~ 198 (432)
T PF06963_consen 121 RLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLF--VGLLMTFASPVIAAIFIAGWNLASVFVEYF 198 (432)
T ss_pred HHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHH--HHHHhhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1112222334553 34556677777777777888899988 5555555677777777777766655432 1
Q ss_pred c---c-CCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhh
Q 012646 170 L---L-PETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQIL 245 (459)
Q Consensus 170 ~---~-~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (459)
+ + ...| .+..+++.++.+...+.. ..++........+...+.-++....++..++++...+-+-..++ ++
T Consensus 199 ~l~~VY~~~P-~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalL----Y~ 272 (432)
T PF06963_consen 199 LLARVYNSVP-ALAVKKRSSESESSSDEE-SSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALL----YF 272 (432)
T ss_pred HHHHHHHhCh-HhcCCCCCcccccccccc-ccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHH----HH
Confidence 1 1 2222 222222221111100000 00000000011111111112223455555555543333322222 22
Q ss_pred cchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCC
Q 012646 246 TGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPN 325 (459)
Q Consensus 246 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (459)
. ...+......|....|+++...+.+-....+.++.|+++..++.+|+|..+.-.++......++.+........-.+.
T Consensus 273 T-VLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~ 351 (432)
T PF06963_consen 273 T-VLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPF 351 (432)
T ss_pred H-HhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 2 122334445566667999999999999999999999999999999999888888877766666555443322110000
Q ss_pred ccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHH
Q 012646 326 QELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQI 389 (459)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 389 (459)
+.......+..+++.-.+. .++-....-++.|..|+++||+..|+-+...++...+.-.+
T Consensus 352 ---~~~s~~~l~~gi~~SR~GL-W~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 352 ---SSISAYLLLGGIALSRIGL-WSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred ---hhhHHHHHHHHHHHHHHHH-HhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 0111112222222222211 12222224566899999999999999999988877554443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.9e-10 Score=103.21 Aligned_cols=140 Identities=16% Similarity=0.083 Sum_probs=117.2
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhh
Q 012646 24 YCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQA 103 (459)
Q Consensus 24 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 103 (459)
+.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++..++.|++.+...+.
T Consensus 234 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 313 (382)
T PRK11128 234 AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLA 313 (382)
T ss_pred HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999998888888999999999999999999988888
Q ss_pred hhhhhhhccCccchhHHHHHHH-HHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHh
Q 012646 104 VPLYLSEMAPTHLRGGLNMMFQ-LATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVG 167 (459)
Q Consensus 104 ~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~ 167 (459)
...++.+. +++++++..+... ....+|..+||.+ ++...+..|+ ..++..++.+++.++.
T Consensus 314 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i--~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 314 AMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVL--SGFLYQHLGA-GVFWVMALVALPALFI 374 (382)
T ss_pred HHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 88888887 5666788888876 5567888899988 5565666676 4666666666554443
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-11 Score=108.02 Aligned_cols=166 Identities=11% Similarity=0.003 Sum_probs=125.0
Q ss_pred HHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCcccc
Q 012646 250 SILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELS 329 (459)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (459)
.+..-.+..-+.+|.++...|++.....+..++++++.|++.||++|++++.+|..+..++.+...+.
T Consensus 51 ~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs------------ 118 (493)
T KOG1330|consen 51 TIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS------------ 118 (493)
T ss_pred hhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH------------
Confidence 33334444445589999999999999999999999999999999999999999999888887777664
Q ss_pred chhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhch-hHHHH-HHHH
Q 012646 330 KSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFK-FGIFL-FFAG 407 (459)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~-~~~~ 407 (459)
...|..++.-.+.+.+-+ .+.|+...+++|.+|.++|++.+++.++...+|+.+|-.+...+.+..+ |...+ ..+.
T Consensus 119 -~~Fwq~~l~R~~vGiGeA-s~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~av 196 (493)
T KOG1330|consen 119 -NHFWQVLLCRGFVGIGEA-SYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAV 196 (493)
T ss_pred -HHHHHHHHHHHHhccchh-hhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehH
Confidence 234445555555555555 5667778899999999999999999999999999888877777766655 44333 3444
Q ss_pred HHHHHHHHHHhccCCCCCCCHH
Q 012646 408 WVTIMTIFVYFFLPETKGVPIE 429 (459)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~ 429 (459)
+..+++++..++.+|.+++..+
T Consensus 197 l~vi~~~L~~~f~~eP~rga~~ 218 (493)
T KOG1330|consen 197 LGVIVGLLVFLFVREPERGARD 218 (493)
T ss_pred HHHHHHHHHHhhccCccccccc
Confidence 4455556666667766654433
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-09 Score=102.00 Aligned_cols=171 Identities=13% Similarity=0.081 Sum_probs=117.1
Q ss_pred HhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhc-----CCch-hhhhhhHHHHHHHHHH
Q 012646 241 MFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKL-----GRRA-LLISGGIQMITCQVIV 314 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~-~~~~~~~~~~~~~~~~ 314 (459)
.+.+.........-.|.++++.|++.++.|........ .+..++.|+++||+ |||| .+..+....+++...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l 85 (402)
T PRK11902 8 GFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAM 85 (402)
T ss_pred HHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHH
Confidence 33444556677778899999999999999988666554 57889999999999 7765 5666666666555554
Q ss_pred HHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 012646 315 SIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLL 394 (459)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 394 (459)
.... +..+.+.......+.. .......+...+++.|..|+++|+++.++......+|..+++.+.+.+.
T Consensus 86 ~~~~----------~~~~~~~l~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~ 154 (402)
T PRK11902 86 AFCP----------PHAALWPLAGLAVLVA-FLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLA 154 (402)
T ss_pred HhcC----------ccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4321 1112222222223333 3333444555688899999999999999999999999999999999888
Q ss_pred hh-chhHHHHHHHHHHHHHHHHHHhccCCCC
Q 012646 395 CS-FKFGIFLFFAGWVTIMTIFVYFFLPETK 424 (459)
Q Consensus 395 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (459)
+. .+|...+.+.++..+...+..+..+|++
T Consensus 155 ~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~ 185 (402)
T PRK11902 155 DRVLGWGNTYLLMAGLMLAGALTTLWAPEPE 185 (402)
T ss_pred hcccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 75 3776666665555555544455556543
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.3e-10 Score=103.32 Aligned_cols=154 Identities=13% Similarity=0.074 Sum_probs=117.3
Q ss_pred HHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccc
Q 012646 249 NSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQEL 328 (459)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (459)
....+++--.+++.+-.+...|........+.++.-++.+++++|+|+-+++..++.+..+=++.+...
T Consensus 388 ~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L----------- 456 (618)
T KOG3762|consen 388 GLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL----------- 456 (618)
T ss_pred HHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh-----------
Confidence 334444433456677667777888888889999999999999999999999999888877777766654
Q ss_pred cchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHH-HHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 012646 329 SKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAV-NLFFTFVIAQIFLTLLCSFKFGIFLFFAG 407 (459)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (459)
.++|..+..-.+-+...+..|.++ .+|++...|++.+.+++++.... ..+|-.+|+.++|.+.+.++..+.+-..+
T Consensus 457 --~n~W~vLPieilqgit~aliWaa~-~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~g 533 (618)
T KOG3762|consen 457 --QNPWMVLPIEILQGITHALIWAAI-ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFG 533 (618)
T ss_pred --cCchheeeHHHHHHHHHHHHHHHH-HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHH
Confidence 557777777788888888888777 48889999999999999998865 46788888889998888887655444444
Q ss_pred HHHHHHHHH
Q 012646 408 WVTIMTIFV 416 (459)
Q Consensus 408 ~~~~~~~~~ 416 (459)
+.+++..+.
T Consensus 534 iAcl~~l~~ 542 (618)
T KOG3762|consen 534 IACLVTLAL 542 (618)
T ss_pred HHHHHHHHH
Confidence 444443333
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.9e-10 Score=108.85 Aligned_cols=161 Identities=12% Similarity=-0.071 Sum_probs=113.5
Q ss_pred HHHHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHH
Q 012646 235 MAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIV 314 (459)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 314 (459)
....+..+.............+.+.++++++..+.|++.+...++..++.++.+++.||.+||+.+.++.++++++.++.
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 33333444444444555556677777799999999999999999999999999999999999999999999999988877
Q ss_pred HHHHhhh--cCCC-------------------c-------------cccch--h-hh-HHHHHHHHHHHHHhhccccccc
Q 012646 315 SIILGLK--FGPN-------------------Q-------------ELSKS--F-SI-LVVVVICLFVLAFGWSWGPLGW 356 (459)
Q Consensus 315 ~~~~~~~--~~~~-------------------~-------------~~~~~--~-~~-~~~~~~~~~~~~~~~~~~~~~~ 356 (459)
.+..... +... . ..+.. . .+ ..++.-++.+.+.+ ...++..
T Consensus 116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~-~~~~~~~ 194 (633)
T TIGR00805 116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT-PIFPLGI 194 (633)
T ss_pred hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC-cchhcCc
Confidence 6542110 0000 0 00000 1 12 22233333333333 3445667
Q ss_pred ceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012646 357 TVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCS 396 (459)
Q Consensus 357 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 396 (459)
+++.|.+|++.|+...|+.+....+|..+++.+.+.+.+.
T Consensus 195 ~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 195 SYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQI 234 (633)
T ss_pred hhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 8899999999999999999999999999999999987754
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-09 Score=103.07 Aligned_cols=154 Identities=8% Similarity=0.071 Sum_probs=131.5
Q ss_pred cccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcc--hhhhHHHHHHHHHHHHHHH--------HhhHHHHHH
Q 012646 19 AHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRR--ASIICGGISFLLGAALNAA--------AANLAMLLT 88 (459)
Q Consensus 19 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk--~~l~~~~~~~~~~~~~~~~--------~~~~~~l~~ 88 (459)
...++++|++..+...+.-...+...+|++++|++.||+|.| ++++.+++++.+..+...+ .++-+.+.+
T Consensus 306 i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~ 385 (477)
T PF11700_consen 306 IYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWV 385 (477)
T ss_pred HHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHH
Confidence 334668899999999999999999999999999999999999 8999988888666666555 577788999
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhcccccc-chhHHHHHhhHHHHHHHHHh
Q 012646 89 GRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLET-WGWRLSLGLAAAPALMMTVG 167 (459)
Q Consensus 89 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~-~gwr~~f~~~~~~~~~~~~~ 167 (459)
.-++.|+..|+.++...++.+|..|+++.+..+|++....-....+||++. +...+. .+-|+.+....++.++.+++
T Consensus 386 ~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~--g~i~~~tg~~r~g~~~l~~lf~~gl~l 463 (477)
T PF11700_consen 386 LAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLF--GLITDATGSQRYGFLFLLVLFLIGLIL 463 (477)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999984 433333 24788888888887777777
Q ss_pred hhccCCC
Q 012646 168 GILLPET 174 (459)
Q Consensus 168 ~~~~~es 174 (459)
.+++++.
T Consensus 464 l~~v~~~ 470 (477)
T PF11700_consen 464 LFFVDVE 470 (477)
T ss_pred Hhhccch
Confidence 7777543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.1e-10 Score=93.58 Aligned_cols=154 Identities=16% Similarity=0.095 Sum_probs=120.0
Q ss_pred ccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHH-------hhHHHHHHHH
Q 012646 18 HAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAA-------ANLAMLLTGR 90 (459)
Q Consensus 18 ~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~-------~~~~~l~~~r 90 (459)
.++.++.+|+|.+|...+.+..-+|..+ +++.|.+.|++|++.++.+|.+...+|..+...+ +++|.+.+..
T Consensus 25 S~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~ 103 (250)
T PF06813_consen 25 SPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFL 103 (250)
T ss_pred hHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHH
Confidence 4455778999999999999999999987 5889999999999999999999999999887664 4678888888
Q ss_pred HHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhc
Q 012646 91 ILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGIL 170 (459)
Q Consensus 91 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~ 170 (459)
++.|.+.+....++.....+.+| ++||++.++.-...+++..+-..+..... ++..-+..+.....+.++.++..++
T Consensus 104 ~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f--~~~~~~fll~la~~~~~v~l~~~~~ 180 (250)
T PF06813_consen 104 FLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFF--GDDPSSFLLFLAVLPAVVCLVAMFF 180 (250)
T ss_pred HHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHHHHHHhhh
Confidence 99999888777887777788897 57999999999999999888777633332 2223444555555555555555555
Q ss_pred cCCCh
Q 012646 171 LPETP 175 (459)
Q Consensus 171 ~~es~ 175 (459)
+++.|
T Consensus 181 vr~~~ 185 (250)
T PF06813_consen 181 VRPVP 185 (250)
T ss_pred eeccC
Confidence 54443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.9e-10 Score=103.45 Aligned_cols=140 Identities=13% Similarity=0.169 Sum_probs=118.0
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhh
Q 012646 26 KYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVP 105 (459)
Q Consensus 26 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 105 (459)
+.+..+.|.+.+...+...++.+..|++.||+|||+.+.++.++.+++..+...+++.+.+++.+++.|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667789999999999999999999999999999999999999999888878888999999999999999877766677
Q ss_pred hhhhhccCccchhHHHHH-HHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHh
Q 012646 106 LYLSEMAPTHLRGGLNMM-FQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVG 167 (459)
Q Consensus 106 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~ 167 (459)
.+..+..+++.++...+. .+....+|.++++.+ .+...+..||+..|.+.++..++..+.
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l--~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTL--AGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHh--HHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 778888888887776665 667889999999998 566666678999999988887766554
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.4e-09 Score=98.78 Aligned_cols=176 Identities=11% Similarity=0.011 Sum_probs=106.2
Q ss_pred HhhhhcchHHHHHhHHHHHHhcC---CCCch---hHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHH
Q 012646 241 MFQILTGINSILFYAPVLFQSMG---FKGDA---SLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIV 314 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~g---~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 314 (459)
.+....-...+....|.+.++++ .+..+ .+.......++..++.++.|++.||+|||+.+..+.....++.+..
T Consensus 31 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~ 110 (432)
T PRK10406 31 NLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVI 110 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 33333444556666677767654 33333 2333444556666999999999999999999999988888877766
Q ss_pred HHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 012646 315 SIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLL 394 (459)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 394 (459)
.+..... ..........++.-.+.+.+.+.. .+....+++|.+|+++|+...++.......|..+++.+...+.
T Consensus 111 ~~~~~~~-----~~~~~~~~~l~~~R~l~G~g~g~~-~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~ 184 (432)
T PRK10406 111 ACLPGYE-----TIGTWAPALLLLARLFQGLSVGGE-YGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQ 184 (432)
T ss_pred hhcCCch-----hHHHHHHHHHHHHHHHHHhhhhhh-HhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5531000 000001112333333444444433 3445688899999999999999887777777777766554433
Q ss_pred --------hhchhHHHHHHHHHHHHHHHHHHhccCC
Q 012646 395 --------CSFKFGIFLFFAGWVTIMTIFVYFFLPE 422 (459)
Q Consensus 395 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (459)
+..+|...+.+.++..++..+.....+|
T Consensus 185 ~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e 220 (432)
T PRK10406 185 QTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDE 220 (432)
T ss_pred HhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2456776666655555544433333444
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=9e-09 Score=97.53 Aligned_cols=146 Identities=11% Similarity=-0.027 Sum_probs=108.4
Q ss_pred HHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHH
Q 012646 238 FMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSII 317 (459)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (459)
.+.++.............|.+.+++|.++.+.++......++..++.+..|++.||+|||+.+..+..+..++.++....
T Consensus 32 ~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~ 111 (438)
T PRK10133 32 CSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPA 111 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455677778898877899999999999999999999999999999999999999999999888887665322
Q ss_pred HhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 012646 318 LGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLL 394 (459)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 394 (459)
. ..++.+..++...+.+.+.+...... ..++.|..|++.|....++.+....+|..+++.+.+.+.
T Consensus 112 ~----------~a~~~~~ll~~r~l~G~g~g~~~~~~-~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 112 A----------EIMNYTLFLVGLFIIAAGLGCLETAA-NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred H----------hcCCHHHHHHHHHHHHHHHHHHHhhH-HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 01223344455555566666544443 455667777676666789999999999999998877554
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-09 Score=105.55 Aligned_cols=134 Identities=22% Similarity=0.148 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhH--HHHHHHHHHhhhhhhhhhhhhhhhhhhccCcc
Q 012646 38 SLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANL--AMLLTGRILLGVGIGFGNQAVPLYLSEMAPTH 115 (459)
Q Consensus 38 ~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 115 (459)
...+...++.++.+++.||+|||+.+..+.++.+++.++..+.++. +...+.-++.+++.+..++....+..|.+|++
T Consensus 363 ~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 442 (505)
T TIGR00898 363 ISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTV 442 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 4445667788899999999999999999999999988888776544 45555667777777778888899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccCCCh
Q 012646 116 LRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETP 175 (459)
Q Consensus 116 ~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~es~ 175 (459)
.|+.++++......+|.+++|.+.. ....++..++++.+...++..+..+++||+.
T Consensus 443 ~r~~~~g~~~~~~~ig~~i~p~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 443 VRNLGVGVCSTMARVGSIISPFLVY----LGEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHhhhHhHHHHHHHHHHHHHhHHHH----HHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 9999999999999999999999843 2334577788888888887777777888875
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.3e-09 Score=101.14 Aligned_cols=113 Identities=21% Similarity=0.271 Sum_probs=96.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHH-hhHHHHHHHHHHhhhhhhhhhhhhhh
Q 012646 28 DNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAA-ANLAMLLTGRILLGVGIGFGNQAVPL 106 (459)
Q Consensus 28 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~ 106 (459)
++.+.+++.+...++..++.+++++++||+|||+++..+.++..++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888899999999999999999999999999998888888777665 46677778888999999999999999
Q ss_pred hhhhccC-------ccchhHHHHHHHHHHHHHHHHHHHHhh
Q 012646 107 YLSEMAP-------THLRGGLNMMFQLATTLGIFTANMINY 140 (459)
Q Consensus 107 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~l~~ 140 (459)
+++|..+ ++++|.+.++.+....+|..+++.+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g 375 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVG 375 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865 456799999999999999999988743
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.3e-09 Score=99.10 Aligned_cols=165 Identities=12% Similarity=0.090 Sum_probs=106.1
Q ss_pred hHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCcc
Q 012646 248 INSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQE 327 (459)
Q Consensus 248 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (459)
.+.+..+.+.+.+++|++..+.+....... ......+..|++.||+|+|+++.++.++..++.++..+.....
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~------ 115 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEV------ 115 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccc------
Confidence 346667788888889999988888776533 3334566789999999999999999999999888777642100
Q ss_pred ccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 012646 328 LSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAG 407 (459)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (459)
-..+.+...+...+.+.+.+...... ...+.+.+| ++||++.|+......+|+.+.+.+...+........+++.+.
T Consensus 116 -i~~s~~~l~l~r~l~G~G~~~~~~~~-~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~v 192 (591)
T PTZ00207 116 -IEGSVVRLSVYNGLMTLGCMLFDLGA-VVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMS 192 (591)
T ss_pred -ccCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 00123333333334444433222222 344567887 789999999999999999876655555443222234444455
Q ss_pred HHHHHHHHHHhccCC
Q 012646 408 WVTIMTIFVYFFLPE 422 (459)
Q Consensus 408 ~~~~~~~~~~~~~~~ 422 (459)
+..+.+++...+++.
T Consensus 193 l~~vv~ll~~~~vr~ 207 (591)
T PTZ00207 193 FALVVGILAIVFMRL 207 (591)
T ss_pred HHHHHHHHHHhheeC
Confidence 555555555555543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.9e-09 Score=99.62 Aligned_cols=168 Identities=15% Similarity=0.120 Sum_probs=105.9
Q ss_pred HHHHHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHH-HHH-----HHHHHHHhHHHHHHHhhcCCchhhhhhhHHH
Q 012646 234 VMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSS-AMT-----GAVLASSTLISIATVDKLGRRALLISGGIQM 307 (459)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~-----~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 307 (459)
.....+..+....-...+....|.+.++++.++.+.+... ... .+...++.++.|++.||+|||+.+..+....
T Consensus 17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~ 96 (434)
T PRK15075 17 ILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIM 96 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHH
Confidence 4444555555666667788888988888888776643322 211 2223467889999999999999999998888
Q ss_pred HHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHH
Q 012646 308 ITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIA 387 (459)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 387 (459)
.++.++..+..... ..........++.-++.+.+.+...... ..+++|.+|+++|+++.++.....+++..+++
T Consensus 97 ~~~~~l~~~~~~~~-----~~~~~~~~~l~~~R~l~G~~~g~~~~~~-~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~ 170 (434)
T PRK15075 97 ASGTLLIAFVPGYA-----TIGLAAPLLVLLGRLLQGFSAGVELGGV-SVYLAEIATPGRKGFYTSWQSASQQVAVVFAA 170 (434)
T ss_pred HHHHHHHHhCCcHH-----HHHHHHHHHHHHHHHHhhccccccHHHH-HHHHHhhCCcccchHHHHHHHHHHHHHHHHHH
Confidence 77777665531000 0000000112233333333333333223 46789999999999999999988888887777
Q ss_pred HHHHHHH--------hhchhHHHHHHHH
Q 012646 388 QIFLTLL--------CSFKFGIFLFFAG 407 (459)
Q Consensus 388 ~~~~~~~--------~~~~~~~~~~~~~ 407 (459)
.+.+.+. +..+|...+.+..
T Consensus 171 ~~g~~l~~~~~~~~~~~~gWr~~f~~~~ 198 (434)
T PRK15075 171 LLGYLLNQWLSPAQMAEWGWRIPFLIGC 198 (434)
T ss_pred HHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence 7766552 3556665555443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-09 Score=85.79 Aligned_cols=133 Identities=15% Similarity=0.184 Sum_probs=92.8
Q ss_pred HHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhccccc
Q 012646 275 MTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPL 354 (459)
Q Consensus 275 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (459)
...++.+++.+..+++.||++||+.+..+.....++.+..... .+.+.......+.+.+.+.. .+.
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~-~~~ 71 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-------------SNITVLIIARFLQGFGAAFA-LVA 71 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHHHHHH-HHh
Confidence 4567788899999999999999999888777766665554432 12333333444444444433 344
Q ss_pred ccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH-HHHHhccC
Q 012646 355 GWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMT-IFVYFFLP 421 (459)
Q Consensus 355 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 421 (459)
...+..|.+|+++|+++.++.+....++..+++.+.+.+.+..++...+.......+.. +..+...|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 72 GAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred HHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 46777899999999999999999999999999999999988877755444444444333 33333333
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-09 Score=95.12 Aligned_cols=116 Identities=12% Similarity=-0.014 Sum_probs=89.9
Q ss_pred CCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHH
Q 012646 265 KGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFV 344 (459)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (459)
+..-+|++...+.+...+.+...|.++||+|||.++..+.+..++...+.+... ....++..=+.+
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~--------------~F~afv~aR~l~ 131 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR--------------NFAAFVLARFLG 131 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhh
Confidence 445678899999999999999999999999999999998888888666555432 222222212222
Q ss_pred HHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012646 345 LAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLC 395 (459)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 395 (459)
+.+. +...+..++++|++++++|+.+++..+....+|.++||.++|++..
T Consensus 132 Gi~k-gnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 132 GIFK-GNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred hhcc-CchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 2222 3333457899999999999999999999999999999999999877
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=8e-09 Score=110.37 Aligned_cols=190 Identities=12% Similarity=0.087 Sum_probs=117.0
Q ss_pred HHhccCchhHHHHHHHHHHhhhhcchHHHHHhHHHHHHh-cCCC-CchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhh
Q 012646 223 NILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQS-MGFK-GDASLYSSAMTGAVLASSTLISIATVDKLGRRALL 300 (459)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 300 (459)
++++.+..++++...++..+........+..+..+.+.. .+.+ ....++......+..++.++++|+++||++||+++
T Consensus 6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~ 85 (1140)
T PRK06814 6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLA 85 (1140)
T ss_pred hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHH
Confidence 345555555555554444443322222222222222222 2221 13456677778888899999999999999999976
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHH
Q 012646 301 ISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNL 380 (459)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 380 (459)
........+.......... ..+.+..++..++.+.+.+ .+.|...+++.+.+|++.++.++|+.++...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~----------~~s~~~l~~~~~l~gi~~a-~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ 154 (1140)
T PRK06814 86 KILKFAEIGIAALAIYGFH----------LNSVPLLFAALFLMGIHSA-LFGPIKYSILPDHLNKDELLGANALVEAGTF 154 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHH-hhchHHHHhhHhhcCccccchhhHHHHHHHH
Confidence 4422222222211111110 0223344444444444444 4456667888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhccCCC
Q 012646 381 FFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPET 423 (459)
Q Consensus 381 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (459)
+|..++|.+.|.+.+..++...++..+++.+.+.++.+++++.
T Consensus 155 ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1140)
T PRK06814 155 IAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKT 197 (1140)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 9999999999999998887766655555555555565666554
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.05 E-value=5e-09 Score=96.93 Aligned_cols=162 Identities=15% Similarity=0.140 Sum_probs=106.5
Q ss_pred HHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhc-----CCchhh-hhhhHHHHHHHHHHHHHHhhhc
Q 012646 249 NSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKL-----GRRALL-ISGGIQMITCQVIVSIILGLKF 322 (459)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 322 (459)
.....-.|.+.++.|++..+.+..... .+...+ .++.|+++||+ |||+.+ ..+.+...+....+.+..
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~---- 78 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV---- 78 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC----
Confidence 345556788889999999999888654 444444 88999999998 788875 444444444443433221
Q ss_pred CCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhch----
Q 012646 323 GPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFK---- 398 (459)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~---- 398 (459)
+....+.......+.... .....+...+++.|.+|+++|+.+.++......+|..+++.+.+.+.++.+
T Consensus 79 ------~~~~l~~l~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~ 151 (356)
T TIGR00901 79 ------PSTDLPLLAGLAFLIAFF-SATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTG 151 (356)
T ss_pred ------cchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 111122222222222222 223334446778899999999999999999999999999999998888777
Q ss_pred ----hHHHHHHHHHHHHHHHHHHhc-cCCC
Q 012646 399 ----FGIFLFFAGWVTIMTIFVYFF-LPET 423 (459)
Q Consensus 399 ----~~~~~~~~~~~~~~~~~~~~~-~~~~ 423 (459)
|...+.+.+++.+...+..++ .+|+
T Consensus 152 ~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 152 LITLWGYIFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 776666666666555554443 4553
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-07 Score=92.87 Aligned_cols=146 Identities=15% Similarity=0.213 Sum_probs=116.8
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHHhHhhhhhh-cCcchhhhHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHhh
Q 012646 24 YCKYDNQGLAAFTSSLYLAGLVASFVASPVTRD-YGRRASIICGGISFLLGAALNAAAAN--------LAMLLTGRILLG 94 (459)
Q Consensus 24 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~~~~~--------~~~l~~~r~l~G 94 (459)
.+|.+.+....+...+....-+..+++|.++|+ +||++.+.++.++..++.++.+++.. ....+++-.+..
T Consensus 17 ~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia 96 (654)
T TIGR00926 17 FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIA 96 (654)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHH
Confidence 468899999999999999999999999999998 59999999999999999988876521 234667778888
Q ss_pred hhhhhhhhhhhhhhhhccCcc---chhHHHHHHHHHHHHHHHHHHHHhhhccc-c----ccchhHHHHHhhHHHHHHHHH
Q 012646 95 VGIGFGNQAVPLYLSEMAPTH---LRGGLNMMFQLATTLGIFTANMINYGTQK-L----ETWGWRLSLGLAAAPALMMTV 166 (459)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~G~~~~~~l~~~~~~-~----~~~gwr~~f~~~~~~~~~~~~ 166 (459)
+|.|+.-+...+...|.++++ +|...+.++..+.++|..+++.+...... . ...+|...|.+.++..++.++
T Consensus 97 ~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~l 176 (654)
T TIGR00926 97 LGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALI 176 (654)
T ss_pred hhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHH
Confidence 999999999999999999754 36678888899999999988877322211 1 123699999998888877765
Q ss_pred hhh
Q 012646 167 GGI 169 (459)
Q Consensus 167 ~~~ 169 (459)
+..
T Consensus 177 vf~ 179 (654)
T TIGR00926 177 VFM 179 (654)
T ss_pred HHH
Confidence 543
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2e-09 Score=95.99 Aligned_cols=153 Identities=11% Similarity=0.109 Sum_probs=130.8
Q ss_pred cCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhh
Q 012646 21 ENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFG 100 (459)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 100 (459)
..+++|++..++.++.....+..++|++++|++.||+|.|+++..+++++.+.++...+...-..+.++-.+.|...|+.
T Consensus 279 g~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~ 358 (438)
T COG2270 279 GAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGA 358 (438)
T ss_pred HHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchH
Confidence 35689999999999999999999999999999999999999999999999999998888877777788889999999999
Q ss_pred hhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccCCC
Q 012646 101 NQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPET 174 (459)
Q Consensus 101 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~es 174 (459)
+..+-++..+..|+++-++.+|++....-.+..+||.+........ .+-|..+....++..+.++..+.+|+.
T Consensus 359 qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iT-g~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 359 QASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQIT-GSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 9999999999999999999999999999999999999843322222 346777766666666666666667654
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.1e-09 Score=95.84 Aligned_cols=133 Identities=11% Similarity=0.001 Sum_probs=98.8
Q ss_pred HHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccc
Q 012646 249 NSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQEL 328 (459)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (459)
.......|.+.+++|.+..+.++......++..++.++.|++.||+|||+.+..+.....++.+.. ..
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~----------- 84 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA----------- 84 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh-----------
Confidence 445567788888999999999999999999999999999999999999999888776665554433 11
Q ss_pred cchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012646 329 SKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSF 397 (459)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 397 (459)
++.+..++...+.+.+.+.... .....+.|.+| ++|+++.++.+....+|..+++.+.+.+.+..
T Consensus 85 --~~~~~l~~~~~~~g~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~ 149 (355)
T TIGR00896 85 --PGTALLFAGTALIGVGIAIINV-LLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHS 149 (355)
T ss_pred --ccHHHHHHHHHHHHHHHHHHhc-cchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1223333334444444443322 22345567776 68999999999999999999999988887665
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.1e-09 Score=98.13 Aligned_cols=143 Identities=15% Similarity=0.003 Sum_probs=109.0
Q ss_pred CcccCCchhhHHHHHHHHH-HHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHH------HhhHHHHHHHHHHhhh
Q 012646 23 NYCKYDNQGLAAFTSSLYL-AGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAA------AANLAMLLTGRILLGV 95 (459)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~------~~~~~~l~~~r~l~G~ 95 (459)
+|.|+++++.|++...... ...++.++.|++.||+|+|+.+..+.++.++..+.... .++...+.....+.++
T Consensus 236 ~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (390)
T TIGR02718 236 VDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSL 315 (390)
T ss_pred HhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHH
Confidence 3469999999999888764 66778999999999999999998877766443332221 1233344555566677
Q ss_pred hhhhhhhhhhhhhhhccCc-cchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHh
Q 012646 96 GIGFGNQAVPLYLSEMAPT-HLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVG 167 (459)
Q Consensus 96 ~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~ 167 (459)
+.+...+.....+.+..++ +++++.+++.+...++|..++|.+ .+...+..||+..|++.++..++..+.
T Consensus 316 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~--~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 316 ITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSI--AGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 7777777888887777776 789999999999999999999999 555566678999999888777665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.4e-08 Score=86.15 Aligned_cols=343 Identities=10% Similarity=0.024 Sum_probs=201.8
Q ss_pred cccCCchhhH-HHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhh
Q 012646 24 YCKYDNQGLA-AFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQ 102 (459)
Q Consensus 24 ~~~~s~~~~~-~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 102 (459)
+.+++..++. -+.-...-.+.+.-.+.=.+.|..-.|++++.-.+.......+.-+.++.+.+=+..++.|...+. ..
T Consensus 35 ~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAa-EI 113 (433)
T KOG3810|consen 35 DKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAA-EI 113 (433)
T ss_pred CCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHH-HH
Confidence 3455555543 223333445556666666789999999999998888888888888999999999999999998664 46
Q ss_pred hhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccCCChhhHHhhC
Q 012646 103 AVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERG 182 (459)
Q Consensus 103 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~es~~~l~~~~ 182 (459)
+-++++-+..+|+++.++.+...+..-.|...|..++-.....+..+....-.+......+..+..+++|..+|.+.-+.
T Consensus 114 AYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~ 193 (433)
T KOG3810|consen 114 AYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHR 193 (433)
T ss_pred hhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhc
Confidence 78899999999999999999999998888888888865555555556666666666665666666778887765554333
Q ss_pred CHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHHHhHHHHHHhc
Q 012646 183 KKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSM 262 (459)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (459)
+.++.. ..+..+.++.. +..+..+ .........+.+..+++. +....+......+++.-...|...+-++.
T Consensus 194 ~~~~~~--v~~~e~~~~~~-~~~~~l~--~~~~~l~~~l~~~y~np~----ll~WSlWwAl~scg~~QV~nY~Q~LW~~~ 264 (433)
T KOG3810|consen 194 LEDKIS--VGDLEEMNPQA-SYMSYLR--GAFVLLWRDLQECYSNPR----LLKWSLWWALASCGYYQVTNYTQILWKEV 264 (433)
T ss_pred ccccce--eccchhcCccc-hhhHHHH--HHHHHHHHHHHHHhcCch----hhhhHHHHHHhhchhHHHHHHHHHHHHhh
Confidence 333111 11111111100 0000000 000000111222223332 33333334444445566666666666553
Q ss_pred CCCC--chhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHH
Q 012646 263 GFKG--DASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVI 340 (459)
Q Consensus 263 g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (459)
.-.+ .--|..=++..+.+.++.+..|++.-++.|..-+.++......+..++... ...+.|......
T Consensus 265 ~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~-----------~t~~Iw~~Ya~y 333 (433)
T KOG3810|consen 265 APNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMA-----------QTQHIWVCYAGY 333 (433)
T ss_pred CCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhh-----------cccceehhhhhH
Confidence 3111 122444556667777888888888766666544433333222222222221 224455566666
Q ss_pred HHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHH
Q 012646 341 CLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQ 388 (459)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 388 (459)
.++...+..... +....+++....+.-|..+|++.+..-+-..+-..
T Consensus 334 vlfr~~y~l~it-iA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~ 380 (433)
T KOG3810|consen 334 VLFRVIYQLTIT-IATFQIARNLSSELFGLVFGINTFVALILQSILTL 380 (433)
T ss_pred HHHHhhHhhhhh-HHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheE
Confidence 666666654433 32344456667788889999888776655544443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=9e-09 Score=110.35 Aligned_cols=143 Identities=15% Similarity=0.064 Sum_probs=119.1
Q ss_pred cccCCcccCCch-hhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhh
Q 012646 19 AHENNYCKYDNQ-GLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGI 97 (459)
Q Consensus 19 ~~~~~~~~~s~~-~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 97 (459)
....+.+|.+.. +.+++.+...++..+++++.|+++||+++|+++.++.++.+++.++..+..+.+.+++..++.|++.
T Consensus 257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 336 (1146)
T PRK08633 257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSA 336 (1146)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 334456788888 9999999999999999999999999999999999999999888888888889998989999999999
Q ss_pred hhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHH
Q 012646 98 GFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPAL 162 (459)
Q Consensus 98 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~ 162 (459)
+...+...+++.+..|+++|++++++.+....+|.++++.++..... ...++...|++.+.+.+
T Consensus 337 ~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~ 400 (1146)
T PRK08633 337 GLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG-LGLSPAGLFYLIALVTL 400 (1146)
T ss_pred HHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHH
Confidence 99888999999999999999999999999999998887776432221 22356666666555443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.7e-08 Score=91.92 Aligned_cols=145 Identities=14% Similarity=0.059 Sum_probs=96.9
Q ss_pred chHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHh----hcCCchhhhhh-hHHHHHHHHHHHHHHhhh
Q 012646 247 GINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVD----KLGRRALLISG-GIQMITCQVIVSIILGLK 321 (459)
Q Consensus 247 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 321 (459)
.+.....+.+.++++.|.+....+.......+..++..++.|+++| |+|||+.++.. .....++..++.......
T Consensus 19 ~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~ 98 (477)
T TIGR01301 19 GWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIG 98 (477)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhh
Confidence 4566666777788889999999999999999999999999999999 59999998775 334334434333321100
Q ss_pred --cCCCccccchhh---hHHHHHHHHHHHHHhhcccccccceecccCCcccc--chhhHHHHHHHHHHHHHHHHHHHHH
Q 012646 322 --FGPNQELSKSFS---ILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETR--SAGQSITVAVNLFFTFVIAQIFLTL 393 (459)
Q Consensus 322 --~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~g~~~~~~~~~~~ 393 (459)
+..... ..... +..+....+..........|. .++++|..|+++| +.+.++.+....+|+.+++.+.+..
T Consensus 99 ~~~~~~~~-~~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~ 175 (477)
T TIGR01301 99 HLFGDNLD-KKTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYS 175 (477)
T ss_pred hhcccccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00011 122333333344444444555 5788999998865 5789999999999999999888764
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.4e-09 Score=94.30 Aligned_cols=145 Identities=11% Similarity=0.057 Sum_probs=114.8
Q ss_pred cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHH
Q 012646 262 MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVIC 341 (459)
Q Consensus 262 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (459)
.+-+..+.|+++....+.+++.+.+.|.++||+|+|..+.+|...+..+.+++.+. ...+..++.-.
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg-------------~sy~~l~vAR~ 167 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG-------------NSYPMLFVARS 167 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc-------------chhHHHHHHHH
Confidence 45566788999999999999999999999999999999999999999988887764 22334444455
Q ss_pred HHHHHHhhcccccccceecccCCccc-cchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhcc
Q 012646 342 LFVLAFGWSWGPLGWTVPSEIFPLET-RSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFL 420 (459)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (459)
+-+.+.+... ....+++++.+|++. |++++|+.-.+..+|-.++|+++|.+++..|+...+.+.+++++.-..+-+++
T Consensus 168 LQgvgsA~~~-tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 168 LQGVGSAFAD-TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLV 246 (464)
T ss_pred HhhhhHHHHH-hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence 5555555443 344678889998775 69999999999999999999999999999998777766666665555544444
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.7e-08 Score=94.82 Aligned_cols=149 Identities=14% Similarity=0.107 Sum_probs=118.8
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHH
Q 012646 261 SMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVI 340 (459)
Q Consensus 261 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (459)
+++++..+.+++......+.+++.+.++++.||+|.|+++..+.++.+++.++...... ...+..++.-
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~-----------~~~~~~~~~R 135 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS-----------IGFYLLLVLR 135 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-----------hcchhhHHHH
Confidence 47788889999999999999999999999999999999999999999988888877642 2233455666
Q ss_pred HHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHHHHHHH-Hh
Q 012646 341 CLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCS-FKFGIFLFFAGWVTIMTIFV-YF 418 (459)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~ 418 (459)
++.+.+.+..+..+ ..+.++-.|+++|++..++......+|.+++-++.|.+.+. .||...+.+.+...++..++ ++
T Consensus 136 ~lqGl~~g~~~pa~-~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~ 214 (466)
T KOG2532|consen 136 FLQGLGQGVLFPAI-GSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFL 214 (466)
T ss_pred HHhHHHHhHHHhhh-hceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 66666777666555 57778999999999999999999999999999999999998 88766555555554444444 34
Q ss_pred ccC
Q 012646 419 FLP 421 (459)
Q Consensus 419 ~~~ 421 (459)
+..
T Consensus 215 ~~~ 217 (466)
T KOG2532|consen 215 FYS 217 (466)
T ss_pred Hhc
Confidence 443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.1e-08 Score=93.76 Aligned_cols=119 Identities=10% Similarity=0.073 Sum_probs=96.6
Q ss_pred cCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHh--hHHHHHHHHHHhhhhhh
Q 012646 21 ENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAA--NLAMLLTGRILLGVGIG 98 (459)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~ 98 (459)
.++.+|.++...++......++..++.+++++++||+|+|+++..+.++..++.++..+.+ +++.+++..++.|+|.+
T Consensus 255 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~ 334 (448)
T PRK09848 255 VRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQG 334 (448)
T ss_pred EeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 3445676665555555555677888999999999999999999999999888887776653 66777778889999999
Q ss_pred hhhhhhhhhhhhccCcc-------chhHHHHHHHHHHHHHHHHHHHHh
Q 012646 99 FGNQAVPLYLSEMAPTH-------LRGGLNMMFQLATTLGIFTANMIN 139 (459)
Q Consensus 99 ~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~~~~l~ 139 (459)
...+...++.+|..|.+ ++|...+..+....+|..+++.+.
T Consensus 335 ~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~ 382 (448)
T PRK09848 335 VTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIP 382 (448)
T ss_pred HHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988754 358899999999999999988774
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.3e-05 Score=73.63 Aligned_cols=114 Identities=8% Similarity=-0.046 Sum_probs=88.6
Q ss_pred CchhhHHHHHHHHHHHHHH-HHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHH----h---------------------
Q 012646 28 DNQGLAAFTSSLYLAGLVA-SFVASPVTRDYGRRASIICGGISFLLGAALNAAA----A--------------------- 81 (459)
Q Consensus 28 s~~~~~~~~s~~~~~~~i~-~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~----~--------------------- 81 (459)
+...+.++-+...+..++. .++.+++++|++|++++-.....+....++.++. +
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 3467889999888877766 8999999999999999888777777766665554 1
Q ss_pred ------hHHHHHHHHHHhhhhhhhhhh-hhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhh
Q 012646 82 ------NLAMLLTGRILLGVGIGFGNQ-AVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYG 141 (459)
Q Consensus 82 ------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~ 141 (459)
+.|...+..+...+-...... .-..++.|.++.+|-.|..+++..+.++|.++++.+...
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~ 187 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKY 187 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133444455556665555555 778899999999999999999999999999999977443
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-08 Score=93.12 Aligned_cols=145 Identities=16% Similarity=0.109 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhh
Q 012646 270 LYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGW 349 (459)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (459)
+....+..+++++|++..++++||+|||..+....+...++.++...... .......++.-++.+...+.
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~----------~~~~e~li~GR~i~Gl~~gl 132 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS----------APSFEMLILGRLIVGLACGL 132 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHhHH
Confidence 45677788999999999999999999999888888877777766665431 13344455555555655555
Q ss_pred cccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHH-HHHHhh-chhHHHHHHHHHHHHHHHHHHhccCCCCC
Q 012646 350 SWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIF-LTLLCS-FKFGIFLFFAGWVTIMTIFVYFFLPETKG 425 (459)
Q Consensus 350 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (459)
..... ..++.|..|.+.||....+......+|..++..+. ..+..+ ..|...+.+..+..++..+...++||..+
T Consensus 133 ~~~~~-pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk 209 (485)
T KOG0569|consen 133 STGLV-PMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPK 209 (485)
T ss_pred HHHHH-HHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 54444 46778999999999999888888888888875443 233322 23666666666777777788888888654
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.1e-08 Score=88.92 Aligned_cols=135 Identities=34% Similarity=0.444 Sum_probs=110.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhh--HHHHHHHHHHhhhhhhhhhhhhhhh
Q 012646 30 QGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAAN--LAMLLTGRILLGVGIGFGNQAVPLY 107 (459)
Q Consensus 30 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~~~~~~~~~~~ 107 (459)
.+.++..+.+.++..++.++.|.++||+|||+.+..+.....++.+.+.+..+ .+.+++.|+.+|++.+...+...++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 118 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL 118 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 57899999999999999999999999999998888888776666777777766 8999999999999999999999999
Q ss_pred hhhccCc-cchhHHHHHHHH-HHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHH
Q 012646 108 LSEMAPT-HLRGGLNMMFQL-ATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMM 164 (459)
Q Consensus 108 i~~~~~~-~~r~~~~~~~~~-~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~ 164 (459)
+.|+.|+ ++|+...+.... ...+|.++++.++.........+||+.|.+........
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (338)
T COG0477 119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLL 177 (338)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 9999987 678998888888 57888888886643222223457999776666555433
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.9e-08 Score=90.51 Aligned_cols=147 Identities=14% Similarity=0.124 Sum_probs=125.3
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhh
Q 012646 26 KYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVP 105 (459)
Q Consensus 26 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 105 (459)
+.++...|.+.+...+.-++...+..++.+|+|.|+.++++..++.+=.++++++++.+.+.+.+.+.|+-.+.......
T Consensus 255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCccchhHHHHHH-HHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhc-cCCC
Q 012646 106 LYLSEMAPTHLRGGLNMMF-QLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGIL-LPET 174 (459)
Q Consensus 106 ~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~es 174 (459)
.|+++.+|++-.++...+. +.+.++|.++.+.+ .+...++.|.+..|++.+.+.++..++..+ ++++
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~--~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPL--AGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhh--HHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 9999999998887777774 78889999998888 677778889999999988887776665544 5443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.2e-08 Score=81.48 Aligned_cols=168 Identities=14% Similarity=0.170 Sum_probs=113.9
Q ss_pred hcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCC
Q 012646 245 LTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGP 324 (459)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (459)
....+.+..|.|.+.+++|+|.++...+.....++..+| +..|.+.|++|.+.++.++.....++...+.......
T Consensus 15 ~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~--- 90 (250)
T PF06813_consen 15 SGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGR--- 90 (250)
T ss_pred cCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCc---
Confidence 335567888999999999999999999988888888765 7889999999999999999999999988776654211
Q ss_pred CccccchhhhHHHHHHHHHHHHHhhccc-ccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 012646 325 NQELSKSFSILVVVVICLFVLAFGWSWG-PLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFL 403 (459)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 403 (459)
.+....|. .....+..+.+.++. ........+.+| ++||++.|+.-....+++.+-..+...+.+........
T Consensus 91 ---i~~~~~~~--~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll 164 (250)
T PF06813_consen 91 ---IPSLPVWL--MCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLL 164 (250)
T ss_pred ---cCccchHH--HHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHH
Confidence 01111222 222222333332221 211223347787 58999999999999999999888888777664334444
Q ss_pred HHHHHHHHHHHHHHhccCC
Q 012646 404 FFAGWVTIMTIFVYFFLPE 422 (459)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~ 422 (459)
..+....+++++...+++.
T Consensus 165 ~la~~~~~v~l~~~~~vr~ 183 (250)
T PF06813_consen 165 FLAVLPAVVCLVAMFFVRP 183 (250)
T ss_pred HHHHHHHHHHHHHhhheec
Confidence 4444444455555555543
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.5e-08 Score=87.51 Aligned_cols=131 Identities=12% Similarity=0.057 Sum_probs=103.5
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhh
Q 012646 24 YCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQA 103 (459)
Q Consensus 24 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 103 (459)
.+|+++.+.++..+.+..+..+|.++.+++.||+|+|+.+..+..+..++.++....++... ...-++.|++.+..+|.
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~ 250 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPT 250 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999998888888887766655554333 33556899999999999
Q ss_pred hhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHH
Q 012646 104 VPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAA 159 (459)
Q Consensus 104 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~ 159 (459)
..+...+..|++ .+.+.++. ....+|..+.|++ .+...+..|.+..|++..+
T Consensus 251 ~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l--~G~lad~~g~~~a~~v~~~ 302 (310)
T TIGR01272 251 IFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLL--QGSLADCLGIQLAFALPVP 302 (310)
T ss_pred HHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHH--HHHHHHhccchHHHHHHHH
Confidence 999999988754 45666665 4566888999987 4555555677888774433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.5e-08 Score=88.53 Aligned_cols=164 Identities=14% Similarity=0.160 Sum_probs=122.5
Q ss_pred chHHHHHhHHHHHH-hcC----CCCchhHHHHHHHHHHHHHHhHHHHHHHhhc-CCchhhhhhhHHHHHHHHHHHHHHhh
Q 012646 247 GINSILFYAPVLFQ-SMG----FKGDASLYSSAMTGAVLASSTLISIATVDKL-GRRALLISGGIQMITCQVIVSIILGL 320 (459)
Q Consensus 247 ~~~~~~~~~~~~~~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
.++.+...+..|+. +.+ ++.+++.-....+....-...+++||++||+ |+|+.+..+.+++.++.+++....
T Consensus 36 syYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~-- 113 (498)
T COG3104 36 SYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS-- 113 (498)
T ss_pred hhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc--
Confidence 34444444443433 355 9888888888888777788889999999995 999999999999999998887641
Q ss_pred hcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCcc--ccchhhHHHHHHHHHHHHHHHHHHHHHHhhch
Q 012646 321 KFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLE--TRSAGQSITVAVNLFFTFVIAQIFLTLLCSFK 398 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 398 (459)
........+...+...+.+..= +....++.|.+|++ +|-.++++..+..++|+.++|.+.+++.++.+
T Consensus 114 ---------~~~~~gl~i~L~~I~iG~Gl~K-~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g 183 (498)
T COG3104 114 ---------VSGPGGLYIGLALIIVGTGLFK-PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYG 183 (498)
T ss_pred ---------cccccHHHHHHHHHHhcccccc-ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhC
Confidence 0122334444444445555433 34457778988654 46778888889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCC
Q 012646 399 FGIFLFFAGWVTIMTIFVYFFLPE 422 (459)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~ 422 (459)
+...+..+++....+++.+...++
T Consensus 184 ~~~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 184 WHVGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc
Confidence 999999999998888888877764
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.2e-08 Score=94.61 Aligned_cols=137 Identities=16% Similarity=0.141 Sum_probs=93.6
Q ss_pred HhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchh
Q 012646 253 FYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSF 332 (459)
Q Consensus 253 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (459)
.-++++.++.|-++ ...++.....++..+..++.|+++|.+|||..++.+.++..++.++.... ++
T Consensus 65 ~~l~~I~~diG~~~-~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA-------------~~ 130 (599)
T PF06609_consen 65 SILPYINADIGGSD-NWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA-------------QN 130 (599)
T ss_pred HHHHHHHHhcCCCc-cchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC-------------Cc
Confidence 34456666777764 45667777889999999999999999999999999999888888877653 22
Q ss_pred hhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 012646 333 SILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFF 405 (459)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (459)
....+....+.+.+.+.. .+....++|..|.+.|..+.++...........++.+...+..+.+|...+.+
T Consensus 131 ~~~~iag~~l~GvgaG~~--~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~ 201 (599)
T PF06609_consen 131 MNTFIAGMVLYGVGAGVQ--ELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYI 201 (599)
T ss_pred HHHHHHHHHHHHHhhHHH--HHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHH
Confidence 333444555555443322 23345578999999998887776655555555666666665555555443333
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.9e-07 Score=82.72 Aligned_cols=136 Identities=14% Similarity=0.071 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhhhhhhc
Q 012646 32 LAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEM 111 (459)
Q Consensus 32 ~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 111 (459)
.+.+.-+-.+...+..+...++.+|...+.=.....+++.++.++.+++++.+.=+++-.+.+++.|........+.. .
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~ 139 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-F 139 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-h
Confidence 344555556666777777888889887655556667788889999999999999999999999999988877777644 5
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhc-cCC
Q 012646 112 APTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGIL-LPE 173 (459)
Q Consensus 112 ~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e 173 (459)
+++ ...+-+..+.+.+.++|+..-.+... ...+-|..+++..++.++..+.+++ +|+
T Consensus 140 y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 140 YGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred cCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 553 34678888888888888876322222 2344577887777776666555554 443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.6e-08 Score=94.77 Aligned_cols=146 Identities=10% Similarity=0.115 Sum_probs=108.0
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHH
Q 012646 261 SMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVI 340 (459)
Q Consensus 261 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (459)
..+.+.....+..++..++.++|.++.|.++||+|||+++..+..+..++.+...+. .+.+...+.-
T Consensus 112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a-------------~~~~~~~~~R 178 (521)
T KOG0255|consen 112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-------------PNYWMFLIFR 178 (521)
T ss_pred eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh-------------CcHHHHHHHH
Confidence 355566677888899999999999999999999999999999999998888666654 2334444444
Q ss_pred HHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhcc
Q 012646 341 CLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFL 420 (459)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (459)
++.+++.+ +...+.+.+..|.++++.|+.+..+ ......++.+++...+++.. +|........+..+..++.+++.
T Consensus 179 fl~G~~~~-~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~ 254 (521)
T KOG0255|consen 179 FLSGFFGS-GPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLP 254 (521)
T ss_pred HHHHhhcc-chhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHcc
Confidence 44444444 3344557788999999999999999 88888888999999998876 45554544444444444445555
Q ss_pred CCC
Q 012646 421 PET 423 (459)
Q Consensus 421 ~~~ 423 (459)
+|.
T Consensus 255 ~Es 257 (521)
T KOG0255|consen 255 PES 257 (521)
T ss_pred CcC
Confidence 554
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.5e-07 Score=89.65 Aligned_cols=173 Identities=18% Similarity=0.184 Sum_probs=128.9
Q ss_pred HHHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHH
Q 012646 236 AIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVS 315 (459)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 315 (459)
..++...........+..+.+.+.++++.+..+.+++..+......+..++.+.+.||+|.|.+.+.+.++..+++++..
T Consensus 50 a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lss 129 (509)
T KOG2504|consen 50 ASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSS 129 (509)
T ss_pred hHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHH
Confidence 33333333333444445566777788898888899999999999999999999999999999999999999999988887
Q ss_pred HHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012646 316 IILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLC 395 (459)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 395 (459)
+.. +.....+..-++.+.++++.+.|.. ..+...+ +++|+.+.|+......+|..+-|.+...+.+
T Consensus 130 F~~------------~i~~l~lt~gvi~G~G~~~~~~pai-viv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~ 195 (509)
T KOG2504|consen 130 FAT------------SLWQLYLTFGVIGGLGLGLIYLPAV-VILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLS 195 (509)
T ss_pred HHh------------hHHHHHHHHHHHhhccchhhhcchh-hhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHH
Confidence 763 2233445555666677777777764 4444555 5889999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHhccCC
Q 012646 396 SFKFGIFLFFAGWVTIMTIFVYFFLPE 422 (459)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (459)
..||.......+.+.+...+.....++
T Consensus 196 ~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 196 KYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999866555555555555555555544
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.6e-07 Score=80.13 Aligned_cols=142 Identities=11% Similarity=-0.072 Sum_probs=108.7
Q ss_pred hhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcC
Q 012646 244 ILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFG 323 (459)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (459)
............|.+.+.++.+..+++........+..+.++..+++.+|+|+|+-++.+..++++++.++.....
T Consensus 25 ~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~---- 100 (422)
T COG0738 25 WGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS---- 100 (422)
T ss_pred HHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh----
Confidence 3334455666788888889999999999999999999999999999999999999999999999999888764421
Q ss_pred CCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012646 324 PNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCS 396 (459)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 396 (459)
.......+...++.+.+.+.. ....+.++..+.|++..+.-+.+...+..+|++++|.+.+.+..+
T Consensus 101 ------~~~y~~FL~~lFila~Gi~~L-etaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils 166 (422)
T COG0738 101 ------SKSYGFFLVALFILASGIGLL-ETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS 166 (422)
T ss_pred ------hhhHHHHHHHHHHHHhhhHHH-HhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 111222333333334443322 233357778888888888889999999999999999999988773
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-06 Score=73.18 Aligned_cols=312 Identities=13% Similarity=0.156 Sum_probs=165.1
Q ss_pred CCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhh
Q 012646 22 NNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGN 101 (459)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 101 (459)
-+.++..+.++|.+.-..+-...+...+.|.++|+-|||+.-+.-++.++++++ .-.++.|-.++++|.+-|+..+..+
T Consensus 64 YstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLF 142 (454)
T KOG4332|consen 64 YSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLF 142 (454)
T ss_pred ehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHH
Confidence 345677888899888888888889999999999999999987766666666554 3457899999999999999999888
Q ss_pred hhhhhh-hhhccCccchhHHHHHHH--------HHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccC
Q 012646 102 QAVPLY-LSEMAPTHLRGGLNMMFQ--------LATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLP 172 (459)
Q Consensus 102 ~~~~~~-i~~~~~~~~r~~~~~~~~--------~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~ 172 (459)
.+..++ +.|..+ +|+.-.-+.. .+..+-.+++.+.+......-..|--.+|-..+.+..+.. ...+.
T Consensus 143 SaFEsWliaEHne--kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigm--Avil~ 218 (454)
T KOG4332|consen 143 SAFESWLIAEHNE--KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGM--AVILS 218 (454)
T ss_pred HHHHHHHHHHhhh--ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHH--HHHHh
Confidence 887775 566553 3332222221 1222223333333222222112333344443333222221 11111
Q ss_pred CChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcchHHHH
Q 012646 173 ETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSIL 252 (459)
Q Consensus 173 es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (459)
.|-+.-++..|.++... ..+...+.+..+ +++.+.-.+...+....+....
T Consensus 219 ---~W~ENygdps~~kdllt-----------------------qf~gaa~aiaSD---~ki~LLG~iqsLFE~smytFVF 269 (454)
T KOG4332|consen 219 ---SWSENYGDPSENKDLLT-----------------------QFKGAARAIASD---EKIALLGAIQSLFEGSMYTFVF 269 (454)
T ss_pred ---hhhhccCChhhhHHHHH-----------------------HhhHhHHHHhcc---hHHHHHHHHHHHHhhhhheeee
Confidence 01100011111100000 001111222222 2233333444444444444445
Q ss_pred HhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCc--hhhhhhhHHHHHHHHHHHHHHhhhcCCCccccc
Q 012646 253 FYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRR--ALLISGGIQMITCQVIVSIILGLKFGPNQELSK 330 (459)
Q Consensus 253 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (459)
.|.|.+-.+ -....-|.++..+.++.++|+-+..++..|-..| ..+.+.+......+.+...... ..+ ++
T Consensus 270 LWTPaLspn--~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~--vsP----~k 341 (454)
T KOG4332|consen 270 LWTPALSPN--DEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSS--VSP----SK 341 (454)
T ss_pred eecccCCCC--cccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhc--cCC----Cc
Confidence 566654311 1122346777777888888888887776664433 3333444333333333222221 111 22
Q ss_pred hhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHH
Q 012646 331 SFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITV 376 (459)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 376 (459)
......++..+++-...+..+..+ .-+-++..|.+.|++.+-...
T Consensus 342 es~~~s~i~F~~~E~cvGlfwPSi-mkmRsqyIPEearstimNfFR 386 (454)
T KOG4332|consen 342 ESPSESLIGFCLFEACVGLFWPSI-MKMRSQYIPEEARSTIMNFFR 386 (454)
T ss_pred CCchHHHHHHHHHHHHHhhcchHH-HHHHHhhCCHHHHhhhhhhee
Confidence 334444666777777777666555 455578889999887655443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.2e-08 Score=92.48 Aligned_cols=152 Identities=11% Similarity=0.018 Sum_probs=116.7
Q ss_pred CCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHH----------hhHHHHHHHHH
Q 012646 22 NNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAA----------ANLAMLLTGRI 91 (459)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~ 91 (459)
.+++|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++.+..... ++.+.++..-+
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~ 359 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI 359 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence 35789999999999999999999999999999999999999999999999887654311 34445566778
Q ss_pred HhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccc-----cccchhHHHHHh-hHHHHHHHH
Q 012646 92 LLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQK-----LETWGWRLSLGL-AAAPALMMT 165 (459)
Q Consensus 92 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~-----~~~~gwr~~f~~-~~~~~~~~~ 165 (459)
+.+++.+........++.+..|+++++...++.....++|..+++.++..... .++++.++...+ ..+..++.+
T Consensus 360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l 439 (468)
T TIGR00788 360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPL 439 (468)
T ss_pred HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987432221 111233333322 333334444
Q ss_pred HhhhccCC
Q 012646 166 VGGILLPE 173 (459)
Q Consensus 166 ~~~~~~~e 173 (459)
.+.+++|+
T Consensus 440 ~~~~llP~ 447 (468)
T TIGR00788 440 PLLHLLPR 447 (468)
T ss_pred HHHHhCCC
Confidence 44456785
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.4e-07 Score=87.98 Aligned_cols=112 Identities=14% Similarity=0.093 Sum_probs=89.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHhhhhhhhhhh
Q 012646 28 DNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAA-----AANLAMLLTGRILLGVGIGFGNQ 102 (459)
Q Consensus 28 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~ 102 (459)
+....+++.+...++..++.+++++++||+|+|+.+..+..+..++.+...+ .++.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777888999999999999999999999888877766655432 34567777788889999999999
Q ss_pred hhhhhhhhccC-------ccchhHHHHHHHHHHHHHHHHHHHHh
Q 012646 103 AVPLYLSEMAP-------THLRGGLNMMFQLATTLGIFTANMIN 139 (459)
Q Consensus 103 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~l~ 139 (459)
...++++|..+ +++.|..++......-+|..+++.+.
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~ 387 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFI 387 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999966 33346688888888888888887664
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.5e-07 Score=83.63 Aligned_cols=146 Identities=18% Similarity=0.273 Sum_probs=115.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHH-hhHHHHH----HHHHHhhhhhhhhh
Q 012646 27 YDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAA-ANLAMLL----TGRILLGVGIGFGN 101 (459)
Q Consensus 27 ~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~-~~~~~l~----~~r~l~G~~~~~~~ 101 (459)
.+....+.+.+...++-.+.-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+... +...+.|+..+..+
T Consensus 240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~ 319 (400)
T PF03825_consen 240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFH 319 (400)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHH
Confidence 566777888888888899999999999999999999999999999988888877 4544333 34567999999999
Q ss_pred hhhhhhhhhccCccchhHHHHHHHHH-HHHHHHHHHHHhhhcccccc------chhHHHHHhhHHHHHHHHHhh-hccCC
Q 012646 102 QAVPLYLSEMAPTHLRGGLNMMFQLA-TTLGIFTANMINYGTQKLET------WGWRLSLGLAAAPALMMTVGG-ILLPE 173 (459)
Q Consensus 102 ~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~~~~l~~~~~~~~~------~gwr~~f~~~~~~~~~~~~~~-~~~~e 173 (459)
.++..++.+..|++.|+++.+++... .++|..+|..+ ++...+. +.|...+.+.+...++..+++ ++++|
T Consensus 320 ~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~i--gG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 320 AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLI--GGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999998764 68999999999 4444443 345566666666666665544 34555
Q ss_pred C
Q 012646 174 T 174 (459)
Q Consensus 174 s 174 (459)
+
T Consensus 398 ~ 398 (400)
T PF03825_consen 398 K 398 (400)
T ss_pred C
Confidence 3
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.3e-07 Score=86.54 Aligned_cols=141 Identities=16% Similarity=0.071 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHh
Q 012646 269 SLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFG 348 (459)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (459)
.+++.....++..++.++.|+++|++|||+.+..+.+...++.++.... .+.....+.-++.+.+.+
T Consensus 91 ~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a-------------~~~~~l~~GR~l~G~g~G 157 (513)
T KOG0254|consen 91 QGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA-------------PSWYQLIVGRILTGLGVG 157 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHhccchh
Confidence 3789999999999999999999999999999999999999998888775 234555666666666666
Q ss_pred hcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc--hhHHHHHHHHHHHHHHHHHHhccCCCC
Q 012646 349 WSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSF--KFGIFLFFAGWVTIMTIFVYFFLPETK 424 (459)
Q Consensus 349 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (459)
...... ..+.+|..|++.||...+..+....+|..++ .+.+....+. +|...+....+..+...+..++.||..
T Consensus 158 ~~~~~~-piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp 233 (513)
T KOG0254|consen 158 GASVLA-PVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESP 233 (513)
T ss_pred hhhhcc-hhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 554444 5788999999999999999999888777666 6666655543 676666666666666555677777643
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.3e-06 Score=75.23 Aligned_cols=334 Identities=13% Similarity=-0.002 Sum_probs=166.2
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHhHhhhhh-----hcCcchhhhH-HHHHHHHHHHHHHHH-----------hhHHHHHH
Q 012646 26 KYDNQGLAAFTSSLYLAGLVASFVASPVTR-----DYGRRASIIC-GGISFLLGAALNAAA-----------ANLAMLLT 88 (459)
Q Consensus 26 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d-----r~Grk~~l~~-~~~~~~~~~~~~~~~-----------~~~~~l~~ 88 (459)
|+|.++.+....++. -..--++|.++.| |+||||.-+. +..+.+..+.+.+.- ++...+..
T Consensus 61 ~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~ 138 (510)
T KOG3574|consen 61 GVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTL 138 (510)
T ss_pred Ccchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHH
Confidence 555555554333222 1233578889999 9999876433 444444444443322 33444444
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccc-------cchhH---------H
Q 012646 89 GRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLE-------TWGWR---------L 152 (459)
Q Consensus 89 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~-------~~gwr---------~ 152 (459)
..++.-+..+..-.+.-.+.-.+.++++-+.+......+...|..++..+ ...... ..+|. .
T Consensus 139 ~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~i--fLaL~s~dF~N~y~rs~P~~~g~ItL~g 216 (510)
T KOG3574|consen 139 LFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVV--FLALESPDFCNTYLRSIPLDQGFITLAG 216 (510)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcce--eeEecChhhhhHHHhcCcCccceEEhhH
Confidence 55666777777777888888888889999999888888888888887766 332211 01221 1
Q ss_pred HHHhhHHHHHHHHHhhhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhH
Q 012646 153 SLGLAAAPALMMTVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQ 232 (459)
Q Consensus 153 ~f~~~~~~~~~~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (459)
..++.+...++.-.+..+..+++..- ..++....-.+..+-++++++.+..+.
T Consensus 217 y~~fwg~~~~vat~Lv~~~kke~~~~---------------------------~~~e~~~~i~~~yk~l~~vLklk~v~~ 269 (510)
T KOG3574|consen 217 YLWFWGALFIVATTLVALLKKENDES---------------------------VDEELELGIHESYKLLRDVLKLKSVRW 269 (510)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchh---------------------------hhhhhhcCHHHHHHHHHHHHcCccHHH
Confidence 23344444444444444443332100 000000000001123455555555443
Q ss_pred HHHHHHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhh-----hhHHH
Q 012646 233 LVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLIS-----GGIQM 307 (459)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~-----~~~~~ 307 (459)
........ -.++.......+.-+.+.|++.++.+....+..-.+++.....|.+..+ +|++... --++.
T Consensus 270 la~i~lt~----K~gf~a~da~t~LkLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~--~~pl~~~lka~~~R~~~ 343 (510)
T KOG3574|consen 270 LAGILLTG----KLGFQAADALTSLKLLEHGVPKEELALIAVPLVPLQIALPLYIGKWTAG--PRPLNVFLKAVPYRLGG 343 (510)
T ss_pred HHHHHHHH----HHHhhhhhhccchHHHHcCCChhHheeeeeehhhHHHhhhhhheeecCC--CCcchHHHHhhhHHHHH
Confidence 33322222 2233444445555666789988886655544444444444444433321 2211110 11111
Q ss_pred HHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHH
Q 012646 308 ITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIA 387 (459)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 387 (459)
+.+..++.+.....-......+.. .....+..-.+..++.........+..+++.|+...|+.+.+.|...++|+-.-.
T Consensus 344 ~~~~t~Lv~~~~~~~~~~G~~~~~-~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~ 422 (510)
T KOG3574|consen 344 GLVQTALVWWTPTLGHSDGTFPRG-YYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPG 422 (510)
T ss_pred HHHHHHHHhhhcccccCCCceeec-hHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHH
Confidence 222222222211000000011111 1111111122222222222222246678899999999999999999999998888
Q ss_pred HHHHHHHhhc
Q 012646 388 QIFLTLLCSF 397 (459)
Q Consensus 388 ~~~~~~~~~~ 397 (459)
.+..++.|..
T Consensus 423 tv~l~l~D~l 432 (510)
T KOG3574|consen 423 TVALWLADGL 432 (510)
T ss_pred HHHHHhcccC
Confidence 8888877743
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.8e-08 Score=83.40 Aligned_cols=129 Identities=15% Similarity=0.090 Sum_probs=95.9
Q ss_pred HHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhhhhhhccCccchhH
Q 012646 40 YLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGG 119 (459)
Q Consensus 40 ~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 119 (459)
.+...-|.++.+.+.||+|||+.|..+.+++++..++.....+-....+.-+..-++.++.+.+.+.|..|.+|..-|+.
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT 470 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence 35566788999999999999999999999999998887766443322222233333345566788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhccC
Q 012646 120 LNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLP 172 (459)
Q Consensus 120 ~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~ 172 (459)
..|.-....-+|.++.|+++ .. ....-..+..+.+...++..+...++|
T Consensus 471 gvGtcSsmaRIggI~~p~iA--~~--~e~s~sl~i~vy~~~~ilagIavcffP 519 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIA--MR--AELSTSLPIFVYGALFILAGIAVCFFP 519 (528)
T ss_pred chhhhhhHHhhhhhhhhHHH--HH--hccceeehHHHHHHHHHHHHHHheeee
Confidence 99999999999999999995 22 111233455566666777777776766
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.5e-07 Score=86.07 Aligned_cols=110 Identities=19% Similarity=0.153 Sum_probs=99.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHh--hHHHHHHHHHHhhhhhhhhhhhhhhh
Q 012646 30 QGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAA--NLAMLLTGRILLGVGIGFGNQAVPLY 107 (459)
Q Consensus 30 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~ 107 (459)
...+.+.....++..++.+++++++||+|+|+.+..+.++.+++.++..+.+ |.+.+++.-++.|++.+...+...++
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~ 339 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM 339 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence 5678888899999999999999999999999999999999999999988886 99999999999999999999999999
Q ss_pred hhhccCc-------cchhHHHHHHHHHHHHHHHHHHHHh
Q 012646 108 LSEMAPT-------HLRGGLNMMFQLATTLGIFTANMIN 139 (459)
Q Consensus 108 i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~l~ 139 (459)
++|..+. ++.|...+......-+|..+++.+.
T Consensus 340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~ 378 (428)
T PF13347_consen 340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIV 378 (428)
T ss_pred cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHH
Confidence 9999873 3457888999888888888887763
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.8e-07 Score=75.33 Aligned_cols=149 Identities=14% Similarity=0.044 Sum_probs=108.3
Q ss_pred cCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHH-HHHHHHHHHhhHHHHHHHHHHhhhhhhh
Q 012646 21 ENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFL-LGAALNAAAANLAMLLTGRILLGVGIGF 99 (459)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 99 (459)
-++.+|+|+...+.+.+.-+.-.++.+++.|.++||+|++-..+.+..+.. ++.....| +++.=..+..+.|+..+.
T Consensus 291 F~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysl 368 (459)
T KOG4686|consen 291 FQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSL 368 (459)
T ss_pred HHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHH
Confidence 357789999999999999999999999999999999999977766554443 34433333 233335566788888777
Q ss_pred hhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhcccccc-chhHHHHH-hhHHHHHHHHHhhhcc
Q 012646 100 GNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLET-WGWRLSLG-LAAAPALMMTVGGILL 171 (459)
Q Consensus 100 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~-~gwr~~f~-~~~~~~~~~~~~~~~~ 171 (459)
........++...|+++.|++.+..+...++|..+.|+++......++ +.|--.|+ +.+.+++....+.+.+
T Consensus 369 lAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 369 LACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 666677788889999999999999999999999999999543333322 34544444 4444444444444444
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.5e-07 Score=84.71 Aligned_cols=155 Identities=15% Similarity=0.018 Sum_probs=103.2
Q ss_pred cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCC-chhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHH
Q 012646 262 MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGR-RALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVI 340 (459)
Q Consensus 262 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (459)
.+-+.+..|+..+...++..++.+..++...|.++ |+.++.+.+++.++.++....... ++...++.++.-
T Consensus 66 ~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~--------~~~~~y~mL~~R 137 (488)
T KOG2325|consen 66 PTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYV--------PNGVKYLMLVAR 137 (488)
T ss_pred CCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhc--------ccchHHHHHHHH
Confidence 67777888999999999999999999999999885 788888999888888887444311 112333333333
Q ss_pred HHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc------------h-h-HHHHHHH
Q 012646 341 CLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSF------------K-F-GIFLFFA 406 (459)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~------------~-~-~~~~~~~ 406 (459)
.+. +.+.+.....-.|+++..-.+.|.++++..+....+|.++||.+...+..-. + | ...++.+
T Consensus 138 ~l~--Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~ 215 (488)
T KOG2325|consen 138 ILT--GVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMA 215 (488)
T ss_pred HHc--CcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHH
Confidence 333 3333334455678788777788888888888877777777776654432210 1 2 2344445
Q ss_pred HHHHHHHHHHHhccCCCCCC
Q 012646 407 GWVTIMTIFVYFFLPETKGV 426 (459)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~ 426 (459)
.+.++..+++.+..+|.++.
T Consensus 216 i~~i~~~v~i~~~f~E~~~~ 235 (488)
T KOG2325|consen 216 ILWIIYIVIILFFFKEVYRG 235 (488)
T ss_pred HHHHHHHHHHHhheeecccC
Confidence 55555556666667765543
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.2e-07 Score=85.42 Aligned_cols=147 Identities=18% Similarity=0.106 Sum_probs=127.8
Q ss_pred CcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhh
Q 012646 23 NYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQ 102 (459)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 102 (459)
+|.+-.+...|........|-.+.-++.+++.+++|+-+++..++.+..+=.+..+...|.|+.+...+++|+..+..+.
T Consensus 399 ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWa 478 (618)
T KOG3762|consen 399 EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWA 478 (618)
T ss_pred hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHH
Confidence 34455677778778888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCccchhHHHHHHHHH-HHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhcc
Q 012646 103 AVPLYLSEMAPTHLRGGLNMMFQLA-TTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILL 171 (459)
Q Consensus 103 ~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~ 171 (459)
+..+|+++..||+-|+.+.++.+.. .++|--+|.++ ++...+.++-|..|.+.++.+++.+++...+
T Consensus 479 a~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslI--GG~~v~~fg~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 479 AIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLI--GGFVVERFGARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred HHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhh--hhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988654 67777888888 6666677889999999999888776655443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.9e-07 Score=83.34 Aligned_cols=152 Identities=13% Similarity=0.072 Sum_probs=107.6
Q ss_pred HhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHH
Q 012646 260 QSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVV 339 (459)
Q Consensus 260 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (459)
++.++...+.+...+++.++.+++.+.++++.||++-.+.+....++..+..++-... ++.+..++.
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~-------------~s~~~~ial 140 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV-------------HSFPGLIAL 140 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-------------hhhHHHHHH
Confidence 3456677788999999999999999999999999995444443333322222222111 334455666
Q ss_pred HHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHh------hchhHHHHHH-HHHHHHH
Q 012646 340 ICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLC------SFKFGIFLFF-AGWVTIM 412 (459)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~ 412 (459)
-++.+.+-+.++++. ..++...+.+++|++.+|+.+....+|+++++.+...+.. ..||...+++ +++..+.
T Consensus 141 r~llGl~es~~wP~~-~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~ 219 (495)
T KOG2533|consen 141 RFLLGLFESGGWPGV-VAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVL 219 (495)
T ss_pred HHHHHHHhcccchHH-HHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHH
Confidence 667777777666655 5777899999999999999999999999999999888643 2356555554 4455566
Q ss_pred HHHHHhccCCCCC
Q 012646 413 TIFVYFFLPETKG 425 (459)
Q Consensus 413 ~~~~~~~~~~~~~ 425 (459)
++++++++|+...
T Consensus 220 gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 220 GIVVFFFLPDNPS 232 (495)
T ss_pred HheEEEEecCChh
Confidence 6677777876544
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.2e-06 Score=81.88 Aligned_cols=109 Identities=16% Similarity=0.162 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHH--HhhHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 012646 31 GLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAA--AANLAMLLTGRILLGVGIGFGNQAVPLYL 108 (459)
Q Consensus 31 ~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 108 (459)
..+.+.....+...++.+++++++||+|+|+.+..+.++..++.+...+ .++.+.+++..++.|++.+...+...+++
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ 344 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF 344 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667778889999999999999999999888766654443333 35677788888999999999999999999
Q ss_pred hhccCc-------cchhHHHHHHHHHHHHHHHHHHHHh
Q 012646 109 SEMAPT-------HLRGGLNMMFQLATTLGIFTANMIN 139 (459)
Q Consensus 109 ~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~l~ 139 (459)
+|..+. ++.|...+.......+|..+|+.++
T Consensus 345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~ 382 (444)
T PRK09669 345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVV 382 (444)
T ss_pred HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 998862 2345677888888888888887764
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-09 Score=104.28 Aligned_cols=145 Identities=19% Similarity=0.208 Sum_probs=102.9
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHH
Q 012646 268 ASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAF 347 (459)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (459)
..+.......++.++|+++.|++.||+|||+.+..+..+..++.++..... ...+.+...+.-.+.+.+.
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~R~~~G~~~ 116 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAP----------SYNNFWMLLIGRFLIGFGI 116 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccc----------ccccccccccccccccccc
Confidence 356778888999999999999999999999999999888888877766541 0013444455555555555
Q ss_pred hhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhh---chhHHHHHHHHHHHHHHHHHHhccCCC
Q 012646 348 GWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCS---FKFGIFLFFAGWVTIMTIFVYFFLPET 423 (459)
Q Consensus 348 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (459)
+... +....++.|..|++.|+...++.+....+|..++..+.....+. ..|.....+..+..+...+...++||.
T Consensus 117 g~~~-~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pES 194 (451)
T PF00083_consen 117 GGAY-VVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPES 194 (451)
T ss_pred cccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5444 34468889999999999999999888888877766654433222 235555555665555556666777765
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.1e-06 Score=75.83 Aligned_cols=112 Identities=21% Similarity=0.108 Sum_probs=75.0
Q ss_pred CCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhh-hHHHHHHHH
Q 012646 264 FKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFS-ILVVVVICL 342 (459)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 342 (459)
+++...+.+.....++.+.|+++.|++.||+|||++....++++.++.++..... ..+++... ++....-.+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~-------~~~~~~~~m~~L~~~R~~ 153 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSV-------GTTSPLGVMMTLCFFRFL 153 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCC-------CCCCCcchhhHHHHHHHH
Confidence 4455677888888999999999999999999999999988888888877444331 11111111 122222223
Q ss_pred HHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHH
Q 012646 343 FVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFT 383 (459)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 383 (459)
.+.+.+ +-.|+..+..+|....+.||+-.+........|.
T Consensus 154 LGiGIG-GDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi 193 (538)
T KOG0252|consen 154 LGIGIG-GDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI 193 (538)
T ss_pred hhcccc-CCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence 333333 3457777888999999999987666555544443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=7e-07 Score=80.58 Aligned_cols=117 Identities=18% Similarity=0.227 Sum_probs=90.3
Q ss_pred CcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhh----cCcchh-hhHHHHHHHHHHHHHHHHhhHH-------------
Q 012646 23 NYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRD----YGRRAS-IICGGISFLLGAALNAAAANLA------------- 84 (459)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grk~~-l~~~~~~~~~~~~~~~~~~~~~------------- 84 (459)
..+|++..+.+.+--..-+...+.+++.|..+|| |||||- +..+.++..++.++.+++.++.
T Consensus 60 ~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~ 139 (498)
T KOG0637|consen 60 QSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKP 139 (498)
T ss_pred HHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccch
Confidence 4468888888888888888889999999999996 898655 5556667777888888876543
Q ss_pred ----HHHHHHHHhhhhhhhhhhhhhhhhhhccCccchhH-HHHHHHHHHHHHHHHHHHHh
Q 012646 85 ----MLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGG-LNMMFQLATTLGIFTANMIN 139 (459)
Q Consensus 85 ----~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~~~~l~ 139 (459)
.++++--+.=+..-.....+-+++.|....+++.+ +.+.+....++|..+|..++
T Consensus 140 rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g 199 (498)
T KOG0637|consen 140 RAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALG 199 (498)
T ss_pred HHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecc
Confidence 33333344445555777888999999998777776 99999999999999988773
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.5e-06 Score=77.87 Aligned_cols=142 Identities=15% Similarity=0.110 Sum_probs=93.9
Q ss_pred cchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhh----cCCchhhh-hhhHHHHHHHHHHHHHHh
Q 012646 246 TGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDK----LGRRALLI-SGGIQMITCQVIVSIILG 319 (459)
Q Consensus 246 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~-~~~~~~~~~~~~~~~~~~ 319 (459)
..+.....|+.+++.+ .|+++..+|.+..+.-+...+.-++.|+++|| +|||+..+ ++.+.++++..++...
T Consensus 23 ~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~-- 100 (460)
T PRK11462 23 IIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYST-- 100 (460)
T ss_pred HHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhC--
Confidence 3345556666666655 89999999999999999999999999999996 57766654 4445555554443321
Q ss_pred hhcCCCccccchh-hhHHHHHHHHHHHHHhhcccccccceecccCC-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012646 320 LKFGPNQELSKSF-SILVVVVICLFVLAFGWSWGPLGWTVPSEIFP-LETRSAGQSITVAVNLFFTFVIAQIFLTLLCS 396 (459)
Q Consensus 320 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 396 (459)
+. .+... ..+..+...++..++.....|- .++.+|..+ +++|++..+.....+.+|+.+++.+...+.+.
T Consensus 101 ----p~--~s~~~~~~y~~~~~~~~~~~~t~~~ipy-~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~ 172 (460)
T PRK11462 101 ----PD--LSMNGKMIYAAITYTLLTLLYTVVNIPY-CALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNL 172 (460)
T ss_pred ----CC--CCcchHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 01111 2233333344445555444444 466677775 78899999999999999888887776555543
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.6e-06 Score=65.04 Aligned_cols=114 Identities=18% Similarity=0.139 Sum_probs=95.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhh
Q 012646 27 YDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPL 106 (459)
Q Consensus 27 ~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 106 (459)
+++..--.-.++.+....+++++.+.+.+++|.|+.+++|.+.+.+-.... +-++.+.++.+-.+.|++.+..+++.-.
T Consensus 34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence 344433445556666778888888999999999999999999988655544 5677889999999999999999999999
Q ss_pred hhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhh
Q 012646 107 YLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYG 141 (459)
Q Consensus 107 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~ 141 (459)
++.+..++++|++..+++......+.++|.++...
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888877433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.1e-07 Score=60.63 Aligned_cols=75 Identities=17% Similarity=0.079 Sum_probs=67.2
Q ss_pred hhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHH
Q 012646 13 YLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLL 87 (459)
Q Consensus 13 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~ 87 (459)
......|.+.+|.++|.++.|++.+.+++||.+|.+...++.++..+++.+..+.+...+..+.+++.++.+...
T Consensus 10 ayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 10 AYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred HHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 344566777888999999999999999999999999999999998889999999999999999999998887653
|
Note that many members are hypothetical proteins. |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.7e-05 Score=69.12 Aligned_cols=41 Identities=10% Similarity=-0.116 Sum_probs=33.6
Q ss_pred cceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012646 356 WTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCS 396 (459)
Q Consensus 356 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 396 (459)
.++-+.+.+|..-|+.+.+.|+..++|+---..+.-++.|.
T Consensus 427 ~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 427 MAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred HHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 56677888999999999999999999987766666666553
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.6e-05 Score=70.06 Aligned_cols=145 Identities=19% Similarity=0.119 Sum_probs=110.7
Q ss_pred CcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhc-CcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhh
Q 012646 23 NYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDY-GRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGN 101 (459)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 101 (459)
.|-|+|..+.|+..+...+.....++....+++|. ++|+..+...+++.++.+.+.+.+.-..+.- -++.|+|.|..+
T Consensus 236 i~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F 314 (395)
T COG2807 236 IDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAF 314 (395)
T ss_pred HHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHH
Confidence 34499999999999999999999999999999975 6788888888888888888888765443333 499999999999
Q ss_pred hhhhhhhhhccCccc-hhHHHHHHHHHHHHHHHHHHHHhhhccccc-cchhHHHHHhhHHHHHHHHHhhhc
Q 012646 102 QAVPLYLSEMAPTHL-RGGLNMMFQLATTLGIFTANMINYGTQKLE-TWGWRLSLGLAAAPALMMTVGGIL 170 (459)
Q Consensus 102 ~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~-~~gwr~~f~~~~~~~~~~~~~~~~ 170 (459)
+.+..++.+..++.+ -++..++.+....+=...||.+. +...+ ..+|+..+...+...++..+.-+.
T Consensus 315 ~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~--G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 315 PLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLF--GFLHDATGSWSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred HHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhH--hHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence 999999998886443 44555566655555556677773 33333 358999888877777766555443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.9e-05 Score=69.93 Aligned_cols=154 Identities=18% Similarity=0.022 Sum_probs=91.9
Q ss_pred HHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHH
Q 012646 258 LFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVV 337 (459)
Q Consensus 258 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (459)
+++++|++..+.+.++....+...+...+.|.+.||+|||+.-+...++..++++.-.. +.....+
T Consensus 60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~--------------~~~~~L~ 125 (354)
T PF05631_consen 60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS--------------SNYPVLL 125 (354)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc--------------cccHHHH
Confidence 44679999999999999999999999999999999999999888777777776653221 2233334
Q ss_pred HHHHHHHHHHhhcccccccceeccc----CCccccchhhHHHHHH-HHHHHHHHHHHHHHHHhhchh--HHHHHHHHHHH
Q 012646 338 VVICLFVLAFGWSWGPLGWTVPSEI----FPLETRSAGQSITVAV-NLFFTFVIAQIFLTLLCSFKF--GIFLFFAGWVT 410 (459)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~~~~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 410 (459)
+.-++.+....+.+...-.-++.|. +|++..+...+..... +.+..+.+..+...+.+..+. ...+..+..+.
T Consensus 126 ~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l 205 (354)
T PF05631_consen 126 LGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLL 205 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 4444444444444333222233443 3555555555544422 334455555555566665543 44555555554
Q ss_pred HHHHHHH-hccCCCCC
Q 012646 411 IMTIFVY-FFLPETKG 425 (459)
Q Consensus 411 ~~~~~~~-~~~~~~~~ 425 (459)
+++.++. ...+|..+
T Consensus 206 ~~~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 206 AVAAVLILKTWPENYG 221 (354)
T ss_pred HHHHHHHHhcccccCC
Confidence 4444443 33445433
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00033 Score=65.82 Aligned_cols=90 Identities=11% Similarity=0.059 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhc---ccc---ccchhHHHHH
Q 012646 82 NLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGT---QKL---ETWGWRLSLG 155 (459)
Q Consensus 82 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~---~~~---~~~gwr~~f~ 155 (459)
.++..++.-++.|++.+.......++.+ .+|++ .+..+..+.+++.+++.++.... ... ...+=..-|.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~ 179 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG 179 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence 5677777788999999888888777766 45544 34444555555555554442111 111 0111223344
Q ss_pred hhHHHHHHHHHhhhccCCChh
Q 012646 156 LAAAPALMMTVGGILLPETPN 176 (459)
Q Consensus 156 ~~~~~~~~~~~~~~~~~es~~ 176 (459)
+..++.++++++...+++.|.
T Consensus 180 ~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 180 TPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 455555555666666776664
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.2e-05 Score=71.76 Aligned_cols=116 Identities=14% Similarity=0.153 Sum_probs=95.8
Q ss_pred CcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHh--hHHHHHHHHHHhhhhhhhh
Q 012646 23 NYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAA--NLAMLLTGRILLGVGIGFG 100 (459)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~ 100 (459)
..++.++....+.......+..++.+++.++.+|+|+|+++.++.++..++.++..+.+ +.+.+++..++.+++.+..
T Consensus 265 y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~ 344 (467)
T COG2211 265 YVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIA 344 (467)
T ss_pred EEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcc
Confidence 34566667777888888888888899999999999999999999999999999988876 7888999999999999999
Q ss_pred hhhhhhhhhhccCc-------cchhHHHHHHHHHHHHHHHHHHHH
Q 012646 101 NQAVPLYLSEMAPT-------HLRGGLNMMFQLATTLGIFTANMI 138 (459)
Q Consensus 101 ~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~l 138 (459)
.+...++++|..+- ++-|...+......=+|..++..+
T Consensus 345 ~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~ 389 (467)
T COG2211 345 NPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI 389 (467)
T ss_pred ccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999888753 233567777777666776666644
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.4e-05 Score=70.92 Aligned_cols=108 Identities=21% Similarity=0.349 Sum_probs=86.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHh---------hHHHHHHHHHHhhhhhhhhhhhhhhhhhhccCcc---chhHHHHHHHHHH
Q 012646 61 ASIICGGISFLLGAALNAAAA---------NLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTH---LRGGLNMMFQLAT 128 (459)
Q Consensus 61 ~~l~~~~~~~~~~~~~~~~~~---------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 128 (459)
|.++++.+++.+|.++..++. +.+.++++-.+.++|.|+.-|...++..|.++++ +|...+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 567888999999998855542 2267899999999999999999999999999865 4667888999999
Q ss_pred HHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhc
Q 012646 129 TLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGIL 170 (459)
Q Consensus 129 ~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~ 170 (459)
++|..++..+ .....++.||.+.|.+.++..++.++.++.
T Consensus 82 n~G~~~~~~~--~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTL--VPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHC--CCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhccc--chhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 9999999888 555556789999999988888777665543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.6e-05 Score=72.55 Aligned_cols=146 Identities=15% Similarity=0.145 Sum_probs=112.9
Q ss_pred cCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhc-CcchhhhHHHHHHHHHHHHHHHHhhH----------------
Q 012646 21 ENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDY-GRRASIICGGISFLLGAALNAAAANL---------------- 83 (459)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grk~~l~~~~~~~~~~~~~~~~~~~~---------------- 83 (459)
..+++|.+...+.-..+.+.-......+.++.++|-| ||-+++.++.++..++..+..++...
T Consensus 64 lt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~ 143 (571)
T KOG1237|consen 64 LTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNV 143 (571)
T ss_pred HHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCc
Confidence 3456677777788888888888888899999999986 99999999999988887665544221
Q ss_pred ---------HHHHHHHHHhhhhhhhhhhhhhhhhhhccC---ccc---hhHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 012646 84 ---------AMLLTGRILLGVGIGFGNQAVPLYLSEMAP---THL---RGGLNMMFQLATTLGIFTANMINYGTQKLETW 148 (459)
Q Consensus 84 ---------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~~---r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~ 148 (459)
..++...-+..+|.|+.-+...++-+|-++ +++ +...+.++....++|..++..+ ....-++.
T Consensus 144 c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~--~vyiq~~~ 221 (571)
T KOG1237|consen 144 CESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTV--LVYIQDNV 221 (571)
T ss_pred ccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHH--HHhhhhcc
Confidence 256667778888999999999999999998 322 2367788888899999888777 55555667
Q ss_pred hhHHHHHhhHHHHHHHHHhh
Q 012646 149 GWRLSLGLAAAPALMMTVGG 168 (459)
Q Consensus 149 gwr~~f~~~~~~~~~~~~~~ 168 (459)
+|.+-|.+..+...+.++++
T Consensus 222 ~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 222 GWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred cceeeccHHHHHHHHHHHHH
Confidence 99999988877766665544
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=9.2e-05 Score=69.69 Aligned_cols=136 Identities=16% Similarity=0.143 Sum_probs=96.4
Q ss_pred HHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccc
Q 012646 276 TGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLG 355 (459)
Q Consensus 276 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (459)
.++..++.+...|.++|++|||..+........+....+.+.. ++..+...+. +++. ......
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~---------------~~~~~~~~l~-g~~~-~~~s~~ 133 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG---------------YWFFLLLGLS-GGFS-AIFSVG 133 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH---------------HHHhhhcccc-cchh-hhhhhh
Confidence 3677888889999999999999998887777666665555431 2222211222 2222 223344
Q ss_pred cceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH-HHHHHhccCCCCCCCH
Q 012646 356 WTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIM-TIFVYFFLPETKGVPI 428 (459)
Q Consensus 356 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 428 (459)
.+++++....+.|....|+.+.....+..++|.+.+.+.+..++...+.++.+..+. .....+++||+...+.
T Consensus 134 ~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 134 FAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred hhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 688899999999999999999999999999999999999988876666655555544 4444566777655443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0002 Score=64.79 Aligned_cols=150 Identities=15% Similarity=0.096 Sum_probs=121.2
Q ss_pred cccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhh-hcCcchhhhHHHHHHHHHHHHHHHH---hhHHHHHHHHHHhh
Q 012646 19 AHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTR-DYGRRASIICGGISFLLGAALNAAA---ANLAMLLTGRILLG 94 (459)
Q Consensus 19 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d-r~Grk~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G 94 (459)
|.-.+-||++..+...+......|..++....|++.. |.++|+.-.+++.+..++..+..++ .+.+.+...-++.|
T Consensus 233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G 312 (403)
T PF03209_consen 233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLG 312 (403)
T ss_pred CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 4445668999999999999999999999999998887 6788888888888888877665544 67789999999999
Q ss_pred hhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhcccc--------ccchhHHHHHhhHHHHHHHHH
Q 012646 95 VGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKL--------ETWGWRLSLGLAAAPALMMTV 166 (459)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~--------~~~gwr~~f~~~~~~~~~~~~ 166 (459)
++.|.......+.+.|..++++.|..+|.+.....++..++..++....+. ...++-.+|.+.++..++.+.
T Consensus 313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ 392 (403)
T PF03209_consen 313 LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV 392 (403)
T ss_pred HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888888887775333221 224677778777776666554
Q ss_pred hh
Q 012646 167 GG 168 (459)
Q Consensus 167 ~~ 168 (459)
+.
T Consensus 393 ll 394 (403)
T PF03209_consen 393 LL 394 (403)
T ss_pred HH
Confidence 43
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.014 Score=55.57 Aligned_cols=252 Identities=11% Similarity=0.039 Sum_probs=134.7
Q ss_pred CchhhHHHHHHHHH-HHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHH--h-----------------------
Q 012646 28 DNQGLAAFTSSLYL-AGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAA--A----------------------- 81 (459)
Q Consensus 28 s~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~--~----------------------- 81 (459)
++..+..+-....+ +..+...+..++++|++|.+++-.....+.....+.++. |
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 55556666665555 345667889999999999998887776666655555542 1
Q ss_pred ------hHHHHHHHHHHhhhhhhhhhh-hhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccc-------ccc
Q 012646 82 ------NLAMLLTGRILLGVGIGFGNQ-AVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQK-------LET 147 (459)
Q Consensus 82 ------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~-------~~~ 147 (459)
+.|.+.+..++.-+-.....+ .-..+..|.++.+|-.|..+++..+.++|.++++.+...... ...
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~ 215 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGV 215 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 123333333444444333333 457888999999999999999999999999998877433332 011
Q ss_pred chhHHHHHh-hHHH---HHHHHHhhhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHH
Q 012646 148 WGWRLSLGL-AAAP---ALMMTVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRN 223 (459)
Q Consensus 148 ~gwr~~f~~-~~~~---~~~~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (459)
..|...... .++. +++...+...+.+.. ..+.+ ......++++++.+.+.++
T Consensus 216 ~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~v---l~~~~---------------------~~~~~~~~kk~k~k~s~~e 271 (491)
T PF03219_consen 216 DAWELSLNSLMGIVLILGIVIILLYRYMNKNV---LTDPR---------------------FYPSAKKKKKKKPKMSLKE 271 (491)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCccc---------------------cchhhhcccccCCCccHHH
Confidence 346544322 2222 222222222221100 00000 0011112223334555555
Q ss_pred HhccCchhHHHHHHHHHHhhhhcchHHHHHhHHHHHHhcCCCCch----hHHHHHHHHHHHHHHhHHHHHHHhhcCCchh
Q 012646 224 ILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDA----SLYSSAMTGAVLASSTLISIATVDKLGRRAL 299 (459)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 299 (459)
-++...+.+.+..+.+....+....+.+........++.--++.+ .|......++..++..++++.+.+|+|-+..
T Consensus 272 s~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~ 351 (491)
T PF03219_consen 272 SFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTA 351 (491)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 554333333344444444433333333333333333332223332 2444555566666667888899999997766
Q ss_pred hhhh
Q 012646 300 LISG 303 (459)
Q Consensus 300 ~~~~ 303 (459)
..+.
T Consensus 352 Alit 355 (491)
T PF03219_consen 352 ALIT 355 (491)
T ss_pred HHHh
Confidence 6554
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.9e-05 Score=52.31 Aligned_cols=65 Identities=15% Similarity=0.292 Sum_probs=55.0
Q ss_pred HhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhH
Q 012646 241 MFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGI 305 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 305 (459)
.+..+.....+.-|.|.++++.|+++.+.|.+..+..+..+++.++.|.++||.++++.......
T Consensus 9 yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 9 YFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 33344456677778888889999999999999999999999999999999999999888765443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00035 Score=68.99 Aligned_cols=159 Identities=14% Similarity=0.076 Sum_probs=101.8
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhh-cCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhh
Q 012646 255 APVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDK-LGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFS 333 (459)
Q Consensus 255 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (459)
..++.+.+|++...+..+........-+..+++|++.|+ +|+++.+..+.++..++..++.+... +. .......
T Consensus 11 vlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~----~~-~~~~~~~ 85 (654)
T TIGR00926 11 VLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI----PS-SGHPLHD 85 (654)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC----cc-cccchHH
Confidence 333444588888888777777777777788889999997 58999999988888888776665310 00 0001111
Q ss_pred hHHHHHHHHHHHHHhhcccccccceecccCCcc---ccchhhHHHHHHHHHHHHHHHHHHHHHHhhc-------hhHHHH
Q 012646 334 ILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLE---TRSAGQSITVAVNLFFTFVIAQIFLTLLCSF-------KFGIFL 403 (459)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~ 403 (459)
...++.+.+...+.+..-.++ .+...|.++++ .+...+.+.....++|+.+++.+.+++.+.. +|...+
T Consensus 86 ~~~l~gLaLia~G~GgiKp~v-saf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF 164 (654)
T TIGR00926 86 LLDLLGLALIALGTGGIKPCV-SAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAF 164 (654)
T ss_pred HHHHHHHHHHHhhccccccCc-hhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHH
Confidence 223334444444444333333 56667777643 3667888888899999999999999887543 355555
Q ss_pred HHHHHHHHHHHHHHhc
Q 012646 404 FFAGWVTIMTIFVYFF 419 (459)
Q Consensus 404 ~~~~~~~~~~~~~~~~ 419 (459)
.+.+++.++++++...
T Consensus 165 ~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 165 GVPAILMILALIVFMA 180 (654)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555443
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00028 Score=59.55 Aligned_cols=57 Identities=12% Similarity=0.080 Sum_probs=38.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhc---cccccchhHHHHHhhHHHHHHHHHhhhcc
Q 012646 115 HLRGGLNMMFQLATTLGIFTANMINYGT---QKLETWGWRLSLGLAAAPALMMTVGGILL 171 (459)
Q Consensus 115 ~~r~~~~~~~~~~~~~G~~~~~~l~~~~---~~~~~~gwr~~f~~~~~~~~~~~~~~~~~ 171 (459)
++|+..+.+...+.++|.++.-..-... .......|++++.+.+++.++-+++...+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677778888888999988876552122 11112469999999888877766665444
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.017 Score=53.64 Aligned_cols=259 Identities=10% Similarity=0.001 Sum_probs=142.7
Q ss_pred CchhhHHHHHHHHH-HHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHH---------hh---------------
Q 012646 28 DNQGLAAFTSSLYL-AGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAA---------AN--------------- 82 (459)
Q Consensus 28 s~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~---------~~--------------- 82 (459)
++..+.++-+..-+ +..+..++.+++.+++.|.+++-..+..+....+++++. ++
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 46667788888887 667899999999999999999888777777777776653 11
Q ss_pred --------HHHHHHHHHHhhhhhhhhhh-hhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhcccccc------
Q 012646 83 --------LAMLLTGRILLGVGIGFGNQ-AVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLET------ 147 (459)
Q Consensus 83 --------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~------ 147 (459)
.|...+...+.-+-.+.... .-.....|.++.+|-.|..++++.+.+++..++..+........+
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~ 218 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEF 218 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHH
Confidence 13333333333333333333 445677899999999999999999999999988877433322111
Q ss_pred --chhHHHHHhhHHHHHHHHHhhhcc----CCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcch
Q 012646 148 --WGWRLSLGLAAAPALMMTVGGILL----PETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPF 221 (459)
Q Consensus 148 --~gwr~~f~~~~~~~~~~~~~~~~~----~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (459)
..-+..+.+.+..+++++.+..++ .+.|+...++ ..++++++.+...
T Consensus 219 ~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~---------------------------~~kk~~~k~k~~~ 271 (509)
T COG3202 219 KDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRA---------------------------KKKKKKKKLKLGL 271 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHH---------------------------hcccccccccCcH
Confidence 113344444444444444444333 3333222111 1111223334455
Q ss_pred HHHhccCchhHHHHHHHHHHhhhhcchHHH-HHhHHHHHHhcCCCCch---hHHHHHHHHHH-HHHHhHHHHHHHhhcCC
Q 012646 222 RNILERRNRPQLVMAIFMPMFQILTGINSI-LFYAPVLFQSMGFKGDA---SLYSSAMTGAV-LASSTLISIATVDKLGR 296 (459)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~---~~~~~~~~~~~-~~~~~~~~g~l~d~~~~ 296 (459)
.+.++...+.+.+..+.+...++..+.+.+ ..|-....+.+-...+. .+......++. .++....++.+.+|.|-
T Consensus 272 ~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW 351 (509)
T COG3202 272 IESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGW 351 (509)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhH
Confidence 555544444444555544444443332222 22222222222221112 23334444444 45556678888899887
Q ss_pred chhhhhhhHHHHHHHHH
Q 012646 297 RALLISGGIQMITCQVI 313 (459)
Q Consensus 297 ~~~~~~~~~~~~~~~~~ 313 (459)
.....+.=+.+.+..++
T Consensus 352 ~~~AlitPiv~litg~l 368 (509)
T COG3202 352 FTGALITPLVMLITGVL 368 (509)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66555544444444333
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.79 E-value=6e-05 Score=51.40 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=42.6
Q ss_pred CcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHH
Q 012646 23 NYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISF 70 (459)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~ 70 (459)
++.|+|+.++|.+.++..+...++++++|.++||+|+++..+....++
T Consensus 28 ~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 28 KQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 357999999999999999999999999999999999988877765543
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.6e-06 Score=79.77 Aligned_cols=157 Identities=13% Similarity=-0.082 Sum_probs=1.0
Q ss_pred HHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHH
Q 012646 238 FMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSII 317 (459)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (459)
.+..+.+.........-.+.+-++++++..+.|++.+..-++.++..++..++.+|..|-+.+-.+.++++++.+++.+.
T Consensus 9 ~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lP 88 (539)
T PF03137_consen 9 CLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALP 88 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhcc
Confidence 33334344444444555566666799999999999999999999999999999999888888888888888888877654
Q ss_pred HhhhcCC--C--c-----------------------------cccchhhhHHHHHHHHHHHHHhhc---ccccccceecc
Q 012646 318 LGLKFGP--N--Q-----------------------------ELSKSFSILVVVVICLFVLAFGWS---WGPLGWTVPSE 361 (459)
Q Consensus 318 ~~~~~~~--~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 361 (459)
....-.. . . ..+..........+++.....+.+ ..++..+|+-|
T Consensus 89 hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDD 168 (539)
T PF03137_consen 89 HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDD 168 (539)
T ss_dssp ---------------------------------------------------------------SSS--------------
T ss_pred HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecc
Confidence 3221000 0 0 000111122222233333333333 34566788999
Q ss_pred cCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 012646 362 IFPLETRSAGQSITVAVNLFFTFVIAQIFLTLL 394 (459)
Q Consensus 362 ~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 394 (459)
..+++..+...|+......+|..+|-.+.+...
T Consensus 169 nv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 169 NVSKKNSPLYIGILYAMSILGPALGFLLGSFCL 201 (539)
T ss_dssp ---------------------------------
T ss_pred ccccccCccchhhhhHHhhccHHHHHHHHHHHH
Confidence 999999999999999888888877766666544
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0012 Score=64.73 Aligned_cols=196 Identities=10% Similarity=0.006 Sum_probs=126.9
Q ss_pred HHHHHHHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHH
Q 012646 232 QLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQ 311 (459)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 311 (459)
.++.+..+..+.+......+......+-++++++..+.|++....-++..+...+..+...|..|-+.+-++.++++++.
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs 176 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS 176 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence 34444455555444444444444555555699999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhhh--------------cCC------------------Ccccc---chhhhHHHHHHHHHHHHHhh---cccc
Q 012646 312 VIVSIILGLK--------------FGP------------------NQELS---KSFSILVVVVICLFVLAFGW---SWGP 353 (459)
Q Consensus 312 ~~~~~~~~~~--------------~~~------------------~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~ 353 (459)
++..+..... ..+ ..... ........+.+++.....+. ...+
T Consensus 177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t 256 (735)
T KOG3626|consen 177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT 256 (735)
T ss_pred HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence 8887653211 000 00000 11111122222222222232 3455
Q ss_pred cccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc------------------h-hHHHHHHHHHHHHHHH
Q 012646 354 LGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSF------------------K-FGIFLFFAGWVTIMTI 414 (459)
Q Consensus 354 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~------------------~-~~~~~~~~~~~~~~~~ 414 (459)
+..+|+-|...+++.....|+...+..+|-++|-.+.+.....+ | |+.-+++.+.+.+...
T Consensus 257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a 336 (735)
T KOG3626|consen 257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA 336 (735)
T ss_pred CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 66788888888888889999999988888887777777654321 1 4455556666666666
Q ss_pred HHHhccCCCCCCC
Q 012646 415 FVYFFLPETKGVP 427 (459)
Q Consensus 415 ~~~~~~~~~~~~~ 427 (459)
+.+++.|+...++
T Consensus 337 ~p~f~fPk~lp~~ 349 (735)
T KOG3626|consen 337 VPLFFFPKELPKS 349 (735)
T ss_pred HHHHhCcccCccc
Confidence 6667777665544
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0017 Score=59.31 Aligned_cols=127 Identities=19% Similarity=0.067 Sum_probs=83.4
Q ss_pred cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhh--HHHHH
Q 012646 262 MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSI--LVVVV 339 (459)
Q Consensus 262 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 339 (459)
+| +.+.+-+...++.+..++..+.+-|+.||+|-|....++.....++..+=.+... + . -++..+ +....
T Consensus 75 Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~----p--~-v~~~f~~~l~~~G 146 (480)
T KOG2563|consen 75 YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSL----P--F-VPPLFRRPLTHTG 146 (480)
T ss_pred hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccC----c--c-ccccchhhhhHHh
Confidence 56 6667778888899999999999999999999999999998888888766554321 0 0 001122 22222
Q ss_pred HHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012646 340 ICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSF 397 (459)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 397 (459)
..+......... .++.-...--+|+++|+++..+..+...+|.+++..+-..+..+.
T Consensus 147 q~iaa~Aq~Fim-~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 147 QSIAAAAQPFIL-GLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred HHHHHHhhhHhh-ccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 222222211111 111223345579999999999999998888888877776666544
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0086 Score=55.06 Aligned_cols=160 Identities=14% Similarity=0.073 Sum_probs=98.9
Q ss_pred HHHhHHHHHHh-cCCCCchhHHHHHHHH-HHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccc
Q 012646 251 ILFYAPVLFQS-MGFKGDASLYSSAMTG-AVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQEL 328 (459)
Q Consensus 251 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (459)
-.+..|++.+. +|++.++...-..+.+ =..+...+....+.|.++.|++++.+.+...+...++.+.
T Consensus 23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~----------- 91 (412)
T PF01770_consen 23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG----------- 91 (412)
T ss_pred CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-----------
Confidence 34455666665 8998887654333333 3345556677888999999999988887777666665543
Q ss_pred cchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc--hhHHHHHHH
Q 012646 329 SKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSF--KFGIFLFFA 406 (459)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~ 406 (459)
.......+.-+.++...+.-. ..++++-...|+++--++.+......-+|..++..++-.+.... .+.....+.
T Consensus 92 --~sv~~mq~~q~~yg~~~a~ev--ay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~is 167 (412)
T PF01770_consen 92 --TSVLAMQLMQFFYGLATAAEV--AYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYIS 167 (412)
T ss_pred --CcHHHHHHHHHHHHHHHHHHH--HHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 223334444444444444321 22344445567777778888888888888877777776665533 344444455
Q ss_pred HHHHHHHHHHHhccCCCCC
Q 012646 407 GWVTIMTIFVYFFLPETKG 425 (459)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~ 425 (459)
.....++++..+++|..++
T Consensus 168 l~~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 168 LASVSLALLIALFLPMPKR 186 (412)
T ss_pred HHHHHHHHHHHHHcCCCCc
Confidence 5555666666677776443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.037 Score=50.55 Aligned_cols=91 Identities=11% Similarity=0.034 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhh---hccccccchhHHHHHhh
Q 012646 81 ANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINY---GTQKLETWGWRLSLGLA 157 (459)
Q Consensus 81 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~---~~~~~~~~gwr~~f~~~ 157 (459)
..+...++.-.+.|.+.|..........++. |++.-+.. ..+.+++..+..++.. ........+=..-|.+.
T Consensus 115 ~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~ytqav----m~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s 189 (406)
T KOG1479|consen 115 GFFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYTQAV----MSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITS 189 (406)
T ss_pred hhHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHHHHHH----HhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHH
Confidence 3466777777888888888887777766665 44443322 2233333333333211 11111112333445555
Q ss_pred HHHHHHHHHhhhccCCChh
Q 012646 158 AAPALMMTVGGILLPETPN 176 (459)
Q Consensus 158 ~~~~~~~~~~~~~~~es~~ 176 (459)
.+..++++++...+|+.|-
T Consensus 190 ~~~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 190 TVILLLCFVLYLVLPKLPF 208 (406)
T ss_pred HHHHHHHHHHHHHhhcchH
Confidence 5656666666666677664
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0099 Score=56.25 Aligned_cols=126 Identities=8% Similarity=-0.005 Sum_probs=78.8
Q ss_pred chhHHHHHHHHHHHHHH-hHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccc------------h--
Q 012646 267 DASLYSSAMTGAVLASS-TLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSK------------S-- 331 (459)
Q Consensus 267 ~~~~~~~~~~~~~~~~~-~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~-- 331 (459)
+...++.....+...+. .++.+++++|++|+++.............++.....- ..+..++. +
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p--~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYP--LSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhc--chhhcCCcHHHHHHHhhcchhhH
Confidence 44555555444444444 7788999999999999887776666666555544321 00000000 0
Q ss_pred ------hhhHHHHHHHHHHHHHhhc-ccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012646 332 ------FSILVVVVICLFVLAFGWS-WGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLC 395 (459)
Q Consensus 332 ------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 395 (459)
..|.... ..+..-.++.. .+-+.|.+++|.+..++..+-.++....+++|..+++.+..++.+
T Consensus 121 ~~i~~~~~W~~~~-FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 121 GFIAILRIWSFAL-FYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111112 22222222222 223668899999999999999999999999999999999888763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0018 Score=61.24 Aligned_cols=156 Identities=18% Similarity=0.189 Sum_probs=88.8
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcC-----CchhhhhhhHHHHHHHHHHHHHHhhhcCCCcccc
Q 012646 255 APVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLG-----RRALLISGGIQMITCQVIVSIILGLKFGPNQELS 329 (459)
Q Consensus 255 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (459)
.+++.+++|+++.+.........+.-. ..++.|.++|-+. ||..+.++.++..++...+.... . .
T Consensus 13 ~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~------~---~ 82 (433)
T PF03092_consen 13 YPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLP------A---S 82 (433)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcc------c---c
Confidence 345556699998887766666555444 4578999999873 44445555544444444333321 0 0
Q ss_pred chhhhHHHHHHHHHHHHHhhcccccccceecccC---CccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 012646 330 KSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIF---PLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFA 406 (459)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (459)
..+.....+...+...+....-. +.-+...|.. |.+ ++...+.......+|+.++..+.|.+.+..++...+.+.
T Consensus 83 ~~s~~~~~~~l~la~~g~a~~DV-~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~ 160 (433)
T PF03092_consen 83 ESSAAIAVVLLFLASFGYAFADV-AADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLIS 160 (433)
T ss_pred cchhhhHHHHHHHHHHHHHHHHH-hhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHH
Confidence 11122222222333333332222 2234445655 433 788888999999999999999999999888765555444
Q ss_pred HHHHHHH-HHHHhccCC
Q 012646 407 GWVTIMT-IFVYFFLPE 422 (459)
Q Consensus 407 ~~~~~~~-~~~~~~~~~ 422 (459)
..+..+. +...+..+|
T Consensus 161 ~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 161 AALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 4443333 333444444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.02 Score=45.23 Aligned_cols=114 Identities=18% Similarity=0.093 Sum_probs=79.9
Q ss_pred CCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHH
Q 012646 265 KGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFV 344 (459)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (459)
++.....-..+......+..++.+.+.+++|.|+.+.++.+...+-...... .+.+..+....+.+
T Consensus 35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~--------------~~~~~l~~~s~l~G 100 (156)
T PF05978_consen 35 SAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY--------------PNSYTLYPASALLG 100 (156)
T ss_pred cccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh--------------hhHHHHHHHHHHHh
Confidence 3334445566677778888889999999999999998887776655444322 22455566666777
Q ss_pred HHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 012646 345 LAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTL 393 (459)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 393 (459)
.+.+..|.+. -.++.+...++.+++..++.-.+...+..+|..+.-.+
T Consensus 101 ~~~a~lW~aq-g~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 101 FGAALLWTAQ-GTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hhhHHhhHhh-hHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666665 36667888888899888888888777776666554443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.032 Score=52.23 Aligned_cols=165 Identities=10% Similarity=-0.076 Sum_probs=85.1
Q ss_pred HhhhhcchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHh
Q 012646 241 MFQILTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILG 319 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (459)
.+....+--...+-.+.++.+ +.-+-...+.....-.+..++.....|.+.||..|.+......+..-++.........
T Consensus 11 h~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~ 90 (432)
T PF06963_consen 11 HFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFL 90 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 333444445556666666666 3334445566666777888888888999999999998877765544433333222211
Q ss_pred hhcCCCcccc--chhhhHHHHHHHHHHHHHhhcccccccc----eecccC--CccccchhhHHHHHHHHHHHHHHHHHHH
Q 012646 320 LKFGPNQELS--KSFSILVVVVICLFVLAFGWSWGPLGWT----VPSEIF--PLETRSAGQSITVAVNLFFTFVIAQIFL 391 (459)
Q Consensus 320 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--p~~~~~~~~g~~~~~~~~g~~~~~~~~~ 391 (459)
..+....... ............+.+.....+......+ ++..+. +++.....++...-+-.+...++|.+.|
T Consensus 91 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG 170 (432)
T PF06963_consen 91 LLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVG 170 (432)
T ss_pred HHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111110 1111112222222222222221111111 111222 2334445555555556678999999999
Q ss_pred HHHhhchhHHHHHH
Q 012646 392 TLLCSFKFGIFLFF 405 (459)
Q Consensus 392 ~~~~~~~~~~~~~~ 405 (459)
.+.+..+......+
T Consensus 171 ~l~t~~s~~~~~~~ 184 (432)
T PF06963_consen 171 LLMTFASPVIAAIF 184 (432)
T ss_pred HHhhccCHHHHHHH
Confidence 99887775444433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.01 Score=40.94 Aligned_cols=70 Identities=10% Similarity=0.045 Sum_probs=59.6
Q ss_pred hHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHH
Q 012646 248 INSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSII 317 (459)
Q Consensus 248 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (459)
-+.++-.+|.+.++.++|..+.+++.+...++.++|.+...++.++.++++.+..+.+...+....+...
T Consensus 8 RFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 8 RFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667899999999999999999999999999999999999888888888888888777777776664
|
Note that many members are hypothetical proteins. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.081 Score=49.69 Aligned_cols=102 Identities=18% Similarity=0.240 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHhHhhhhh---hcCcchhhhHHHHHHHHHHHHHHHH------------------hhHHHHHHHHHHhh
Q 012646 36 TSSLYLAGLVASFVASPVTR---DYGRRASIICGGISFLLGAALNAAA------------------ANLAMLLTGRILLG 94 (459)
Q Consensus 36 ~s~~~~~~~i~~~~~g~l~d---r~Grk~~l~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~l~G 94 (459)
.-...+|..+++.+.+.+++ |+||++.+..+..+..++.++.... +++...++.-++.|
T Consensus 285 ~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G 364 (461)
T KOG3098|consen 285 SIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLG 364 (461)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHh
Confidence 33344555566666777765 5899999999999998888887654 24667777889999
Q ss_pred hhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHH
Q 012646 95 VGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMI 138 (459)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l 138 (459)
++-+......+.++.+.. +++|..+.++...-..++..++...
T Consensus 365 ~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 365 FGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred hHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999 6778888888888888877665544
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.00049 Score=61.91 Aligned_cols=113 Identities=12% Similarity=0.056 Sum_probs=2.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhc-CCchhhhhhhHHHHHHHHHHHHHHhhhcCCCc---cccchhhhHHHHHHHHHHHHH
Q 012646 272 SSAMTGAVLASSTLISIATVDKL-GRRALLISGGIQMITCQVIVSIILGLKFGPNQ---ELSKSFSILVVVVICLFVLAF 347 (459)
Q Consensus 272 ~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 347 (459)
....+.++..+|+.+..+..-+. ++|++... .+.=.+. +.+...... .+.. ...-.+.+..++...+++...
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~-s~~R~~f-iPlf~~cn~--~p~~~~~~~~~~~d~~~~i~~~l~g~TN 262 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWIL-SLLRFLF-IPLFLLCNV--QPRPRYLPVLFNSDAWFIILMLLFGFTN 262 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHH-HHHHHHH-HHHHHHHHh--hcccccCCCcccchHHHHHHHHHHHHcc
Confidence 46678899999999888743221 23433322 1111111 111111100 1000 000122333444444555444
Q ss_pred hhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHH
Q 012646 348 GWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQI 389 (459)
Q Consensus 348 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 389 (459)
+.. ..+...+..+..+++.|..+..+....-.+|-.+|..+
T Consensus 263 Gyl-~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 263 GYL-STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp -----HHHH---------------------------------
T ss_pred chh-hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 34446677788888888877776666666666555543
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.037 Score=50.95 Aligned_cols=110 Identities=14% Similarity=0.033 Sum_probs=80.5
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHH-----HHHHHHHHHHhhHHHHHHHHHHhhhhhhhh
Q 012646 26 KYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISF-----LLGAALNAAAANLAMLLTGRILLGVGIGFG 100 (459)
Q Consensus 26 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~-----~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 100 (459)
.-..++..+....|.+|..++.--...+ |+ |++.+.+.+-. .+.....-+.++.|..++.-+..|+..|..
T Consensus 277 ~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~ 352 (402)
T PF02487_consen 277 FSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGAS 352 (402)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHH
Confidence 3346677788888887776664332221 33 33333332222 122223344688999999999999999999
Q ss_pred hhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHh
Q 012646 101 NQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMIN 139 (459)
Q Consensus 101 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~ 139 (459)
+......+.|-.++++|..+++..+.+.++|..++.+++
T Consensus 353 YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~ 391 (402)
T PF02487_consen 353 YVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLG 391 (402)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999884
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0027 Score=58.17 Aligned_cols=159 Identities=14% Similarity=0.076 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhh----cCCchhhhhhhH-
Q 012646 231 PQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDK----LGRRALLISGGI- 305 (459)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~~~~~- 305 (459)
+.++....+....++ ++..-..|.+.+.+..|.+....+.......+.+++-+++.|..+|| +||||..+....
T Consensus 32 ~~li~v~~ia~Gvqf-~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQF-GWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 444444555555444 34556667777878899998888888888889999999999999996 688877665444
Q ss_pred HHHHHHHHHHHHHhhh--cCCCccccc--hhhhHHHHHHHHHHHHHhhcccccccceecccCCccccch-hhHHHHHHHH
Q 012646 306 QMITCQVIVSIILGLK--FGPNQELSK--SFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSA-GQSITVAVNL 380 (459)
Q Consensus 306 ~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~g~~~~~~~ 380 (459)
...++.+++....... ..++..... -.....++.+.+.-+.......|. -++..|+..++.+.+ +.+....+..
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~-ra~L~Dl~~~d~~~~~Ans~f~~f~a 189 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPC-RALLADLARGDAKKTRANSVFSFFMA 189 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhH-HHHHHHhccChhhhhccchhHHHHHH
Confidence 4444444444332211 111111100 111122223333334444445555 577788887666666 8888888888
Q ss_pred HHHHHHHHHHH
Q 012646 381 FFTFVIAQIFL 391 (459)
Q Consensus 381 ~g~~~~~~~~~ 391 (459)
+|+.++=...+
T Consensus 190 vGnvLGY~~g~ 200 (498)
T KOG0637|consen 190 VGNVLGYALGS 200 (498)
T ss_pred hcceeeeeccc
Confidence 88876655544
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.29 Score=44.98 Aligned_cols=185 Identities=12% Similarity=0.134 Sum_probs=79.7
Q ss_pred HHHHHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHH
Q 012646 234 VMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVI 313 (459)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 313 (459)
.+.+++........++.+.+-.+++.+++-.+.. .........+...+..++.-.+--+...|....++..+.....+.
T Consensus 20 ~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il~ 98 (406)
T KOG1479|consen 20 YLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAILF 98 (406)
T ss_pred HHHHHHHhcccccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555556677787888888776433322 334444444444444444444444433222222222222222211
Q ss_pred HHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 012646 314 VSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTL 393 (459)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 393 (459)
..... ..............+......++...+.+...+.+ +.. +..+|+++....++=.+..+.+.+ +...+....
T Consensus 99 i~~l~-~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~-~G~-a~~~P~~ytqavm~G~a~aG~l~S-l~~i~tka~ 174 (406)
T KOG1479|consen 99 IVTLD-LALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSL-YGL-AGLFPSEYTQAVMSGQALAGTLTS-LLRILTKAA 174 (406)
T ss_pred HHHHH-HHhhccCCccchhHHHHHHHHHHHhhhhhhhccch-hhh-hhcCCHHHHHHHHhcchhHhHHHH-HHHHHHHHh
Confidence 11111 11101111112222333334444444444333333 344 355677765544333333332222 222222222
Q ss_pred Hhh--chhHHHHHHHHHHHHHHHHHHhccCCC
Q 012646 394 LCS--FKFGIFLFFAGWVTIMTIFVYFFLPET 423 (459)
Q Consensus 394 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (459)
.+. .+-..++....+..+++++++...++.
T Consensus 175 ~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~l 206 (406)
T KOG1479|consen 175 FSDSRTSALIYFITSTVILLLCFVLYLVLPKL 206 (406)
T ss_pred cCCCCceeehhHHHHHHHHHHHHHHHHHhhcc
Confidence 222 223456666777777777777755543
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.12 Score=50.09 Aligned_cols=114 Identities=15% Similarity=0.050 Sum_probs=67.2
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhH-HHHHHH-HHHHHH----HHHhhH-HHHHHHHHHhhhhh
Q 012646 25 CKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIIC-GGISFL-LGAALN----AAAANL-AMLLTGRILLGVGI 97 (459)
Q Consensus 25 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~-~~~~~~-~~~~~~----~~~~~~-~~l~~~r~l~G~~~ 97 (459)
+|-+..+.+.+.+++..|.++|+.+++++.++--|+...+- ...+.+ ++..+. ++...+ ..++..-++.|+..
T Consensus 45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (521)
T PRK03612 45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI 124 (521)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788889999999999999999999988744322222111 111111 111111 111111 22333446677888
Q ss_pred hhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHh
Q 012646 98 GFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMIN 139 (459)
Q Consensus 98 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~ 139 (459)
|...|....+..+... ++-++..|-......+|.++|.++.
T Consensus 125 G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~ 165 (521)
T PRK03612 125 GMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAF 165 (521)
T ss_pred HHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHH
Confidence 8888877776655432 2235566777777777777777764
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.27 Score=43.90 Aligned_cols=135 Identities=17% Similarity=0.122 Sum_probs=82.3
Q ss_pred HHHHhHHHHHHhcCCCC--chhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCcc
Q 012646 250 SILFYAPVLFQSMGFKG--DASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQE 327 (459)
Q Consensus 250 ~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (459)
......+.+..+.+.+. ...+.......+...++.+..|.+.||.|||+.+..+......+........
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--------- 90 (338)
T COG0477 20 LLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP--------- 90 (338)
T ss_pred hHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc---------
Confidence 33444555555555544 3678888888888888889999999999999776666554333322222211
Q ss_pred ccchhhhHHHHHHHHHHHHHhhcccccccceecccCCc-cccchhhHHHHH-HHHHHHHHHHHHHHHHHhh
Q 012646 328 LSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPL-ETRSAGQSITVA-VNLFFTFVIAQIFLTLLCS 396 (459)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~-~~~~g~~~~~~~~~~~~~~ 396 (459)
....+.........+.+.+ ...+....+..|..|. +.|+...+.... ...++..+++.+.+.+...
T Consensus 91 --~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 91 --NVGLALLLILRLLQGLGGG-GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred --cchHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112222222222233333 3344456777888887 578888888877 5777778888666666554
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.11 Score=48.43 Aligned_cols=121 Identities=8% Similarity=-0.010 Sum_probs=77.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCcc---ccchhhHH
Q 012646 298 ALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLE---TRSAGQSI 374 (459)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~ 374 (459)
+.+..+.++..++.+++.+..... ...+........+.+.+...+.+.. =|....+..|.++++ .|...+..
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~----~~~~~~~~~~~~~gL~lia~G~G~~-K~ni~~~~~dq~~~~~~~~~~~~F~~ 76 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPP----SLPSGIQLGLFYIGLALIAVGTGGI-KPNISPFGADQYDEDDDSRRDSFFNW 76 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSS----SC------CHHHHHHHHHHHHHHCC-HHHHHHHHHHCSSTTTTTHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcc----hhhhhHHHHHHHHHHHHHHhccccc-cccHHHHHHHHhcccchhhhhhhHHH
Confidence 455667777777777765543211 0011122234444455555555533 333356778888655 45667778
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhccCCC
Q 012646 375 TVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPET 423 (459)
Q Consensus 375 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (459)
.....++|+.++..+.+++.++.+|...+.+..++.+++.+.+...++.
T Consensus 77 fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~ 125 (372)
T PF00854_consen 77 FYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKR 125 (372)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcC
Confidence 8889999999999999999999999988888888888888777666443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.57 Score=44.89 Aligned_cols=117 Identities=14% Similarity=0.037 Sum_probs=70.7
Q ss_pred HHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhh---hcCCCccc-------cchh--------hhHHHHHH
Q 012646 279 VLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGL---KFGPNQEL-------SKSF--------SILVVVVI 340 (459)
Q Consensus 279 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------~~~~--------~~~~~~~~ 340 (459)
+.++...+..++++++++.++.............+.++...- .+.++... .... .|...+..
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 344556678899999999998877666665555555544320 01111000 0000 11111111
Q ss_pred HHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012646 341 CLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLC 395 (459)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 395 (459)
+..-.......+-+.|.+++|.++.++..+..++....+++|..+++.+...+.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111222233458889999999999999999999999999999999888776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=94.51 E-value=1.5 Score=41.58 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccC
Q 012646 400 GIFLFFAGWVTIMTIFVYFFLP 421 (459)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~ 421 (459)
..++..+.+..+++++++..++
T Consensus 175 ~~YF~~a~~v~l~~i~~~~~l~ 196 (437)
T TIGR00939 175 LGYFGTPCVVQLICIVCYLLLP 196 (437)
T ss_pred hhHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555566666665554
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.024 Score=49.22 Aligned_cols=135 Identities=13% Similarity=0.018 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhhhhhhc
Q 012646 32 LAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEM 111 (459)
Q Consensus 32 ~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 111 (459)
.|.+.-+-.+-..+..+....+.||+---.=..+..++.+.+.++.++++|.++=+++-.+..++.|.....-.++-+ .
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss-~ 142 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSS-R 142 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhc-c
Confidence 344444555556666677777888864333334555677888888899999999999999988888876655444433 3
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhcc
Q 012646 112 APTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILL 171 (459)
Q Consensus 112 ~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~ 171 (459)
+++. ..+-+..+.+.+.++|..--.......+.+-|...++...+..+.....+++
T Consensus 143 Y~~~----~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~l 198 (409)
T KOG3880|consen 143 YPSI----VIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFL 198 (409)
T ss_pred CCCc----eeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhe
Confidence 3322 2334444444445555433112222234567788888777766666666554
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.41 E-value=3.4 Score=39.05 Aligned_cols=131 Identities=10% Similarity=-0.030 Sum_probs=79.3
Q ss_pred CchhHHHHHHHHH-HHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhh---cCCCc--------cccch--
Q 012646 266 GDASLYSSAMTGA-VLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLK---FGPNQ--------ELSKS-- 331 (459)
Q Consensus 266 ~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--------~~~~~-- 331 (459)
++...++-...-+ +.++..++..++.+++.+.++............++++....-. ..++. ..+..
T Consensus 60 ae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~ 139 (509)
T COG3202 60 AESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLK 139 (509)
T ss_pred chhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccce
Confidence 4444444444444 5666777888899999998888777666666666665544210 00000 00000
Q ss_pred ------hhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012646 332 ------FSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCS 396 (459)
Q Consensus 332 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 396 (459)
+.|.........-.-......-+.+..++|....++..+-.++.+...+++..++..+..++..+
T Consensus 140 ~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 140 WFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred eeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 01222222222222222233335577889999999999999999999999999999998887664
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=2.2 Score=41.56 Aligned_cols=46 Identities=11% Similarity=0.042 Sum_probs=29.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHh-hchh-HHHHHHHHHHHHHH
Q 012646 368 RSAGQSITVAVNLFFTFVIAQIFLTLLC-SFKF-GIFLFFAGWVTIMT 413 (459)
Q Consensus 368 ~~~~~g~~~~~~~~g~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~ 413 (459)
-+...|-......+|+++|+.+.+.+.- ..|. ...+..+.+..+++
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4566788888888999999988887654 4553 33333333333333
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.22 E-value=3.4 Score=40.69 Aligned_cols=165 Identities=11% Similarity=0.002 Sum_probs=95.9
Q ss_pred HHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhc-CCchhhhhhhHHHHHHHHHHHHHHhhhcCCC-----
Q 012646 252 LFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKL-GRRALLISGGIQMITCQVIVSIILGLKFGPN----- 325 (459)
Q Consensus 252 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 325 (459)
.....++...++.+...+...............+.+++++|.+ ||-+.+.++..+..++..++...........
T Consensus 58 ~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~ 137 (571)
T KOG1237|consen 58 SNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKF 137 (571)
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Confidence 3444444555777766666666666677777778899999975 7888888888888888766665543321110
Q ss_pred --c---cccchhhhHHHHHHHHHHHH-HhhcccccccceecccCCc----ccc--chhhHHHHHHHHHHHHHHHHHHHHH
Q 012646 326 --Q---ELSKSFSILVVVVICLFVLA-FGWSWGPLGWTVPSEIFPL----ETR--SAGQSITVAVNLFFTFVIAQIFLTL 393 (459)
Q Consensus 326 --~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~----~~~--~~~~g~~~~~~~~g~~~~~~~~~~~ 393 (459)
. ..+.......++...+.... ...+.-|...++-+|.++. +.+ ..-+.......++|..++..+.-++
T Consensus 138 ~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyi 217 (571)
T KOG1237|consen 138 KPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYI 217 (571)
T ss_pred CCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 0 01111112222222222222 2223344445666777772 222 2556677777888888888888887
Q ss_pred HhhchhHHHHHHHHHHHHHHHHH
Q 012646 394 LCSFKFGIFLFFAGWVTIMTIFV 416 (459)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~ 416 (459)
.++.+|...+....++..+++++
T Consensus 218 q~~~~w~lgf~i~~~~~~lai~i 240 (571)
T KOG1237|consen 218 QDNVGWKLGFGIPTVLNALAILI 240 (571)
T ss_pred hhcccceeeccHHHHHHHHHHHH
Confidence 77777654444444444333333
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.17 E-value=3.7 Score=36.61 Aligned_cols=72 Identities=19% Similarity=0.257 Sum_probs=54.7
Q ss_pred HHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcc
Q 012646 40 YLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEMA 112 (459)
Q Consensus 40 ~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 112 (459)
++.....+++.+.+..++|-|+.+.++...+...... =+-+.+..++..-.+.|++.+..+..--+|+++.-
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~-Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAA-NLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-hcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence 3444566666678999999999999888776653322 23477889999999999999999888777776654
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.89 Score=42.93 Aligned_cols=64 Identities=17% Similarity=0.057 Sum_probs=34.3
Q ss_pred HhhhhcchHHHHHhHHHHHHh--cCCCCchhHHHHH---HHHHHHHHHhHHHHHHHhhcCCchhhhhhh
Q 012646 241 MFQILTGINSILFYAPVLFQS--MGFKGDASLYSSA---MTGAVLASSTLISIATVDKLGRRALLISGG 304 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~---~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 304 (459)
.+.+....+...--.|.++++ .+.+-.+.+.... ++++=-+-+.++=....+|+||||..++-.
T Consensus 9 Y~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~ 77 (544)
T PF13000_consen 9 YFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPI 77 (544)
T ss_pred HHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHH
Confidence 333444434333456888877 6776666544322 222222222333345566899998876643
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.13 Score=44.03 Aligned_cols=52 Identities=19% Similarity=0.075 Sum_probs=39.3
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHH
Q 012646 257 VLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMI 308 (459)
Q Consensus 257 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 308 (459)
++.+++|+...+.+.+........++...+.|-+.||.|||+.-+.-.+...
T Consensus 62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYi 113 (454)
T KOG4332|consen 62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYI 113 (454)
T ss_pred eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHH
Confidence 3456788888888888877777777778889999999999987655443333
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.73 E-value=1.3 Score=40.30 Aligned_cols=63 Identities=19% Similarity=0.140 Sum_probs=37.0
Q ss_pred HHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHh-----hcCCchhhhhh
Q 012646 238 FMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVD-----KLGRRALLISG 303 (459)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~~~~~~~~~~ 303 (459)
......+....+... -.|.+++..|.|-++.+.......=-. -.++...+.| |+||||..++-
T Consensus 37 l~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P~s--LKllWaPiVDs~y~k~~GrrksWvvp 104 (510)
T KOG3574|consen 37 LFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWPFS--LKLLWAPIVDSVYSKRFGRRKSWVVP 104 (510)
T ss_pred HHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhHHH--HHHHHHhhhHHHHHHhhccccceeee
Confidence 333444555555555 889999888887666554433332211 1344555566 99999876653
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.14 Score=45.99 Aligned_cols=121 Identities=16% Similarity=-0.003 Sum_probs=61.6
Q ss_pred HHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHH------H------hhHHHHHHHHHHhhhhhh----hhhhhh
Q 012646 41 LAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAA------A------ANLAMLLTGRILLGVGIG----FGNQAV 104 (459)
Q Consensus 41 ~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~------~------~~~~~l~~~r~l~G~~~~----~~~~~~ 104 (459)
....+..++.|...|+..|+|++...+++.-++.++++- . .++..+..+-.+.-...+ ......
T Consensus 74 gs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~ 153 (503)
T KOG2601|consen 74 GSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGT 153 (503)
T ss_pred hHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 344677788899999999999988877766554444332 1 234444443333322211 111111
Q ss_pred hhhhhhcc----CccchhHH---HHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHH
Q 012646 105 PLYLSEMA----PTHLRGGL---NMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALM 163 (459)
Q Consensus 105 ~~~i~~~~----~~~~r~~~---~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~ 163 (459)
...-.||. ..+.+... .+..-..-..--.++|.+ .+......+-|..-.+.++.+++
T Consensus 154 i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~--tg~Iitfvsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 154 ILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVI--TGLIITFVSLRASAGTFAAWALV 217 (503)
T ss_pred EEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhh--hcccceeechhhhhhhhHHHHHH
Confidence 22223443 22333333 344444445555667776 45555555556544444444443
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.15 Score=44.56 Aligned_cols=117 Identities=12% Similarity=0.068 Sum_probs=81.1
Q ss_pred CcccCCch-hhHHHHHHHHHHHHHHHHhHhhhhhhc-CcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhh
Q 012646 23 NYCKYDNQ-GLAAFTSSLYLAGLVASFVASPVTRDY-GRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFG 100 (459)
Q Consensus 23 ~~~~~s~~-~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 100 (459)
+.+..+.+ |.-|....|.+|..+.---....--++ ---.++..-.+++.+...+..+.++++..++.-+.-|+-.|..
T Consensus 280 ~g~sls~~sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGas 359 (409)
T KOG3880|consen 280 HGFSLSKDSQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGAS 359 (409)
T ss_pred cCCccchhhcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchH
Confidence 44444433 477888888877644322111110000 0001222333445555566677899999999999999998999
Q ss_pred hhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHh
Q 012646 101 NQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMIN 139 (459)
Q Consensus 101 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~ 139 (459)
++...--+.+-.++++|-.+++....+-++|..++..++
T Consensus 360 YVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~la 398 (409)
T KOG3880|consen 360 YVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLA 398 (409)
T ss_pred HHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHh
Confidence 988888888888999999999999999999999998884
|
|
| >KOG2881 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.12 E-value=3.2 Score=35.21 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=19.5
Q ss_pred HHHHHhHHHHHHHhhcCCchhhhhhhHHHHHH
Q 012646 279 VLASSTLISIATVDKLGRRALLISGGIQMITC 310 (459)
Q Consensus 279 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 310 (459)
+..++.+-+-+++.|+.-|++.+.+.+++.+.
T Consensus 252 CT~lAVigGk~lAskIS~rtVt~~ggi~Fi~F 283 (294)
T KOG2881|consen 252 CTGLAVIGGKYLASKISVRTVTLIGGILFIIF 283 (294)
T ss_pred HHHHHHhhhHHHhhhheeEEEEEecchhHHHH
Confidence 33333333446778888888877776655444
|
|
| >PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea | Back alignment and domain information |
|---|
Probab=86.89 E-value=7.1 Score=36.52 Aligned_cols=18 Identities=6% Similarity=0.023 Sum_probs=9.8
Q ss_pred HHHHHHhHHHHHHHhhcC
Q 012646 278 AVLASSTLISIATVDKLG 295 (459)
Q Consensus 278 ~~~~~~~~~~g~l~d~~~ 295 (459)
+..++.....|++..|.+
T Consensus 6 i~~i~~ii~~G~~~~~~~ 23 (385)
T PF03547_consen 6 ILPIFLIILLGYLLGRFG 23 (385)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 344445555666666653
|
Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=84.19 E-value=7.7 Score=33.48 Aligned_cols=104 Identities=16% Similarity=0.120 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhhh-cCcchhhh----HHHHHHHHHHHHHHH-H----hhHHHHHHHHHHhhhhhhhhh
Q 012646 32 LAAFTSSLYLAGLVASFVASPVTRD-YGRRASII----CGGISFLLGAALNAA-A----ANLAMLLTGRILLGVGIGFGN 101 (459)
Q Consensus 32 ~~~~~s~~~~~~~i~~~~~g~l~dr-~Grk~~l~----~~~~~~~~~~~~~~~-~----~~~~~l~~~r~l~G~~~~~~~ 101 (459)
.....-.+..|..+|.+..|++... +.||+.+. .+++++.++.+.... . .++..+++.-++.|+..=+..
T Consensus 143 ~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ 222 (267)
T PF07672_consen 143 IPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ 222 (267)
T ss_pred hHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455556667777888888888764 56776554 345555555554212 1 245667777788887654443
Q ss_pred hhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHH
Q 012646 102 QAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTAN 136 (459)
Q Consensus 102 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 136 (459)
++ .-.+..-+++.++.+.--.++..+++|.++-.
T Consensus 223 ~V-iL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yT 256 (267)
T PF07672_consen 223 GV-ILNLPHEYKGYNPKKIGIQFGLIWGFGYIFYT 256 (267)
T ss_pred HH-HhcChhhhcCCCcceehhHHHHHHHHHHHHHH
Confidence 33 23344444444444555555666677766543
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.42 E-value=35 Score=31.43 Aligned_cols=58 Identities=9% Similarity=-0.098 Sum_probs=32.7
Q ss_pred HHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHH
Q 012646 256 PVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVI 313 (459)
Q Consensus 256 ~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 313 (459)
..++.. .|-+..-......+-+...++...+.|...|+..|+|++.....+.-++..+
T Consensus 51 sL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~v 109 (503)
T KOG2601|consen 51 SLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIV 109 (503)
T ss_pred HHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHH
Confidence 344444 2323333444444455555556666777789999988876665544444333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 459 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 9e-36 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 459 | |||
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 2e-04 |
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 37/153 (24%), Positives = 57/153 (37%), Gaps = 14/153 (9%)
Query: 29 NQGLAAFTSSLYLAGL-VASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLL 87
+G YL V+ P++ GRR I+ G F+L + ++L +L+
Sbjct: 33 REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLI 92
Query: 88 TGRILLGVGIGFGN---QAVP--LYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGT 142
+ G+G G G + +P LY H LNM ++ L A +I G
Sbjct: 93 AASAMQGMGTGVGGVMARTLPRDLYERTQL-RHANSLLNMGILVSPLL----APLI--GG 145
Query: 143 QKLETWGWRLSLG-LAAAPALMMTVGGILLPET 174
W WR L A + +PET
Sbjct: 146 LLDTMWNWRACYLFLLVLCAGVTFSMARWMPET 178
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 459 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.96 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.47 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.46 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.41 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.38 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.37 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.34 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.12 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-46 Score=361.38 Aligned_cols=402 Identities=26% Similarity=0.464 Sum_probs=320.9
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHH------------------HHhhHHHHH
Q 012646 26 KYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNA------------------AAANLAMLL 87 (459)
Q Consensus 26 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~------------------~~~~~~~l~ 87 (459)
+.+..+.|++.+++.+|..+|++++|+++||+|||++++++.+++.+++++++ +++|++.++
T Consensus 51 ~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~ 130 (491)
T 4gc0_A 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFV 130 (491)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHH
Confidence 44567789999999999999999999999999999999999999999999998 478999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhcccc------ccchhHHHHHhhHHHH
Q 012646 88 TGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKL------ETWGWRLSLGLAAAPA 161 (459)
Q Consensus 88 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~------~~~gwr~~f~~~~~~~ 161 (459)
++|+++|++.|+..+....+++|+.|+++|++..++.+.+..+|.++++.++...... ...+||+.+.+..++.
T Consensus 131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (491)
T 4gc0_A 131 IYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPA 210 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999998885433221 2357999999999999
Q ss_pred HHHHHhhhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHH
Q 012646 162 LMMTVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPM 241 (459)
Q Consensus 162 ~~~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (459)
++..+..+++||||+|+..+++.+++++.+++.+..+..+++..+.++..+.+++.. .... ....++.........
T Consensus 211 ~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~ 286 (491)
T 4gc0_A 211 LLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTG-GRLL---MFGVGVIVIGVMLSI 286 (491)
T ss_dssp HHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-THHH---HSCCTHHHHHHHHHH
T ss_pred hhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhh-hHHH---HhcccHHHHHHHHHH
Confidence 988888899999999999999999999998887765544443333332222222111 1111 122334555566666
Q ss_pred hhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhh
Q 012646 242 FQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLK 321 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (459)
+.+..+.....+|.+.+.+..+.+...........++..+++.++++++.||+|||+.+..+.....++.+.+.....
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~-- 364 (491)
T 4gc0_A 287 FQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY-- 364 (491)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh--
Confidence 777778888889999998888888778788888889999999999999999999999999888888887776655432
Q ss_pred cCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc----
Q 012646 322 FGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSF---- 397 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~---- 397 (459)
.....+..+....++..+++.++.++.+.+.+|++|++.|+++.|+.+..+++++.+++.+++.+.+..
T Consensus 365 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~ 437 (491)
T 4gc0_A 365 -------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA 437 (491)
T ss_dssp -------TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH
T ss_pred -------cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112234455555666667777788888899999999999999999999999999999999888765432
Q ss_pred --h-hHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHhcccc
Q 012646 398 --K-FGIFLFFAGWVTIMTIFVYFFLPETKGVPIEEMILLWRKHWF 440 (459)
Q Consensus 398 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (459)
+ ...++++++++.+..++.++++||||+|++||+++..+++.+
T Consensus 438 ~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 438 HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETK 483 (491)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC----
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCc
Confidence 1 234566677777777888899999999999999887765543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-38 Score=299.27 Aligned_cols=373 Identities=13% Similarity=0.078 Sum_probs=273.1
Q ss_pred hhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHH----HhhHHHHHHHH
Q 012646 15 KKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAA----AANLAMLLTGR 90 (459)
Q Consensus 15 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r 90 (459)
....+...+++ .+..+.|++.+.+.++..++++++|+++||+|||++++.+.++.+++.+++++ +++++.++++|
T Consensus 48 ~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 126 (451)
T 1pw4_A 48 ALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL 126 (451)
T ss_dssp HHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHH
T ss_pred HHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH
Confidence 34445566778 99999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccch-hHHHHHhhHHHHHHHHHh-h
Q 012646 91 ILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWG-WRLSLGLAAAPALMMTVG-G 168 (459)
Q Consensus 91 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~g-wr~~f~~~~~~~~~~~~~-~ 168 (459)
+++|++.+...+...+++.|++|+++|++++++...+..+|.+++|.++ ....+..| ||+.|++.++++++..++ .
T Consensus 127 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~~l~~~~g~w~~~f~~~~~~~~~~~~~~~ 204 (451)
T 1pw4_A 127 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF--LLGMAWFNDWHAALYMPAFCAILVALFAF 204 (451)
T ss_dssp HHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH--HHHHHHTCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999994 44345567 999999999888776554 4
Q ss_pred hccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcc--hHHHhccCchhHHHHHHHHHHhhhhc
Q 012646 169 ILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHP--FRNILERRNRPQLVMAIFMPMFQILT 246 (459)
Q Consensus 169 ~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (459)
+++||+|++...+++.+.. ++ ..+ +.++ .++++....+ .++.+++ +.++...+..+....
T Consensus 205 ~~~~~~~~~~~~~~~~~~~----------~~-~~~--~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 266 (451)
T 1pw4_A 205 AMMRDTPQSCGLPPIEEYK----------ND-YPD--DYNE-KAEQELTAKQIFMQYVLPN----KLLWYIAIANVFVYL 266 (451)
T ss_dssp HHCCCSSTTTCCCSCTTTC----------CC-----------------CCTHHHHHHTSSC----HHHHHHHHHHHHHHH
T ss_pred hhccCCHhhcCCCChhhhc----------cc-ccc--cchh-hhhcccccccchHHHHHcC----HHHHHHHHHHHHHHH
Confidence 6688887543221111100 00 000 0000 0000101111 1222322 233444444444555
Q ss_pred chHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhc--CCchhhhhhhHHHH-HHHHHHHHHHhhhc
Q 012646 247 GINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKL--GRRALLISGGIQMI-TCQVIVSIILGLKF 322 (459)
Q Consensus 247 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 322 (459)
.......+.|.++++ +|++..+.+.......++.+++.++.+++.||+ ++|+.+..+..+.. ++.+++...
T Consensus 267 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 341 (451)
T 1pw4_A 267 LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN----- 341 (451)
T ss_dssp HHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC-----
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh-----
Confidence 566777888888887 899999999999999999999999999999999 99888776655544 332222111
Q ss_pred CCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHH-HHHHHHHHHHHHHhhchhHH
Q 012646 323 GPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLF-FTFVIAQIFLTLLCSFKFGI 401 (459)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~~~~~~~~~~~~ 401 (459)
...+.+.......+.+.+.+.. .+....+..|.+|++.|+++.|+.+....+ +..++|.+.|.+.++.++..
T Consensus 342 ------~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 414 (451)
T 1pw4_A 342 ------PAGNPTVDMICMIVIGFLIYGP-VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDG 414 (451)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHTHH-HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHH
T ss_pred ------cccCHHHHHHHHHHHHHHHhch-HHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 1112333334444444444333 333357788999999999999999999999 99999999999999988777
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 012646 402 FLFFAGWVTIMTIFVYFFL 420 (459)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~ 420 (459)
.+...+++.+++.++..+.
T Consensus 415 ~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 415 GFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666555555544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=279.84 Aligned_cols=355 Identities=12% Similarity=0.102 Sum_probs=263.1
Q ss_pred hhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHH---HHHhhHHHHHHH
Q 012646 13 YLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALN---AAAANLAMLLTG 89 (459)
Q Consensus 13 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~ 89 (459)
......+...+++|+++.+.|++.+.+.+++.++++++|+++||+|||++++.+.++.+++.+++ +++++++.+++.
T Consensus 44 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (438)
T 3o7q_A 44 LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVG 123 (438)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 33344455678899999999999999999999999999999999999999999999999999999 888999999999
Q ss_pred HHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccch--------------------
Q 012646 90 RILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWG-------------------- 149 (459)
Q Consensus 90 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~g-------------------- 149 (459)
|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.++..... ...+
T Consensus 124 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 202 (438)
T 3o7q_A 124 LFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL-SNVPHQSQDVLDKMSPEQLSAYKH 202 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHH-TSSCCCCHHHHHHSCHHHHHHHHH
T ss_pred HHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccccCCcchhhhhhh
Confidence 9999999999999999999999999999999999999999999999999533321 2222
Q ss_pred -----hHHHHHhhHHHHHHHHHhhhc--cCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchH
Q 012646 150 -----WRLSLGLAAAPALMMTVGGIL--LPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFR 222 (459)
Q Consensus 150 -----wr~~f~~~~~~~~~~~~~~~~--~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (459)
||+.|++.+++.++..+..++ .||+++...+++ ++++.+.+++
T Consensus 203 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~------------------------------~~~~~~~~~~ 252 (438)
T 3o7q_A 203 SLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDA------------------------------KQGSFSASLS 252 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS------------------------------STTSHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc------------------------------cccchhhhHH
Confidence 999998877776666554433 466542100000 0011112344
Q ss_pred HHhccCchhHHHHHHHHHHhhhhcchHHHHHhHHHH-HHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhh
Q 012646 223 NILERRNRPQLVMAIFMPMFQILTGINSILFYAPVL-FQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALL 300 (459)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 300 (459)
+.++++..+ ...+..+...........+.|.+ .++ +|++..+.+.......++.+++.++.+++.||++||+.+
T Consensus 253 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~ 328 (438)
T 3o7q_A 253 RLARIRHWR----WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL 328 (438)
T ss_dssp HHTTCSHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHhChHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 555544432 23333333444456667777877 777 599999999999999999999999999999999999998
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHH
Q 012646 301 ISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNL 380 (459)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 380 (459)
..+..+..++.+++... ... .......+.+.+.+.. .+..+.+..|.+|++ ++.+.++.. .+.
T Consensus 329 ~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~-~~~ 391 (438)
T 3o7q_A 329 AAYALIAMALCLISAFA-------------GGH-VGLIALTLCSAFMSIQ-YPTIFSLGIKNLGQD-TKYGSSFIV-MTI 391 (438)
T ss_dssp HHHHHHHHHHHHHHHHC-------------CHH-HHHHHHHHHHHHHTTH-HHHHHHHHHSSCGGG-HHHHHHHHH-HTT
T ss_pred HHHHHHHHHHHHHHHHc-------------CCc-HHHHHHHHHHHHHHHH-HHHHHHHHHhhcccc-ccchhhHHH-HHH
Confidence 88877776665544432 111 2233334444444433 345567777889866 888888877 677
Q ss_pred HHHHHHHHHHHHHHhhch-hHHHHHHHHHHHHHHHHHHhc
Q 012646 381 FFTFVIAQIFLTLLCSFK-FGIFLFFAGWVTIMTIFVYFF 419 (459)
Q Consensus 381 ~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 419 (459)
+++.++|.+.|.+.+..+ +...+.+.+++.+...+..+.
T Consensus 392 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 392 IGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARF 431 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988 666555555554444443333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-33 Score=266.01 Aligned_cols=392 Identities=15% Similarity=0.110 Sum_probs=251.3
Q ss_pred CCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhh-cCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhh
Q 012646 22 NNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRD-YGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFG 100 (459)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 100 (459)
++|+|++..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+..
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 45689999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhccCccc--hhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhcc-CCCh--
Q 012646 101 NQAVPLYLSEMAPTHL--RGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILL-PETP-- 175 (459)
Q Consensus 101 ~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~-~es~-- 175 (459)
.+...++++|++|+++ |+.++++++.+.++|..++|.+ +....+..|||+.|++.++..++..+..++. |+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~--~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 203 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLI--VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDP 203 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHH--HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 9999999999999988 7778888999999999999999 4555556789999999877776665544332 2111
Q ss_pred --hhHHhhCCHHHHHHHHHH----------------HhCCchhhHHHHHHHH---------HHHhhccCCcchHHHhccC
Q 012646 176 --NSLIERGKKVEGRRVLEK----------------IRGTKEVNAEYQDMVD---------ASELANSIKHPFRNILERR 228 (459)
Q Consensus 176 --~~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 228 (459)
+...++.+.++.++..+. ..+..+.+........ .....++.+.+ ...+++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 281 (491)
T 4aps_A 204 HYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVT--STEHLR 281 (491)
T ss_dssp CCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred cccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhccccc--HHHHHH
Confidence 011111122333332222 1111111111000000 00000000000 001111
Q ss_pred chhHHHHHHHHHHhhhhcchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhh-----h
Q 012646 229 NRPQLVMAIFMPMFQILTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLI-----S 302 (459)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-----~ 302 (459)
... .....+........+.....+.+.+.++ .+.+..+.+.......+..+++..+.+++.||++||+... .
T Consensus 282 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~ 359 (491)
T 4aps_A 282 VVS--YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAV 359 (491)
T ss_dssp CTT--HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHH
T ss_pred HHH--HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHH
Confidence 111 1111212222222333444555666655 6777667788888889999999999999999999987655 4
Q ss_pred hhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHH
Q 012646 303 GGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFF 382 (459)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 382 (459)
+..+..++..++....... .. ....+.+.......+.+.+.+. ..+..+.++.|.+|++.|+++.|+.+....+|
T Consensus 360 ~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 434 (491)
T 4aps_A 360 GLMFAGLSFLLMAIPGALY-GT---SGKVSPLWLVGSWALVILGEML-ISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVG 434 (491)
T ss_dssp HHHHHHHHHTTTHHHHHHC-CC---CTTCCTHHHHHHHHHHHHHHHT-TTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc-CC---CCCccHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 5555555544443322110 00 0112233344444444444443 34555788899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhccCCCC
Q 012646 383 TFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPETK 424 (459)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (459)
..+++.+.+.+.+......+...+.++.+..++.++..++.+
T Consensus 435 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 435 SALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998877654444555555555555555555544433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=268.03 Aligned_cols=349 Identities=14% Similarity=0.156 Sum_probs=258.5
Q ss_pred hhhhhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHH
Q 012646 7 KFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAML 86 (459)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l 86 (459)
.+....+.+.. +...+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.++.+++++++.+
T Consensus 13 ~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l 91 (375)
T 2gfp_A 13 QMAQTIYIPAI-ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVL 91 (375)
T ss_dssp HHHHHHHHHHH-HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhh-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHH
Confidence 33333343433 44567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHH
Q 012646 87 LTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTV 166 (459)
Q Consensus 87 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~ 166 (459)
++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+ .....+..+||+.|++.++..++..+
T Consensus 92 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 92 IAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLI--GGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHH--HHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHH--HHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 55555667999999999888877766
Q ss_pred -hhhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhh
Q 012646 167 -GGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQIL 245 (459)
Q Consensus 167 -~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (459)
..+++||++++.. ++++.+.++++.++++. .+...+..+...
T Consensus 170 ~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 212 (375)
T 2gfp_A 170 SMARWMPETRPVDA---------------------------------PRTRLLTSYKTLFGNSG----FNCYLLMLIGGL 212 (375)
T ss_dssp CCCCSSCCCSTTTC---------------------------------CCCCTTTCSTHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHCcccCCCCc---------------------------------ccccHHHHHHHHhcCcc----hHHHHHHHHHHH
Confidence 4455788763210 00112334445554443 222333333334
Q ss_pred cchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHH-HHHHHHHHHHHHhhhcC
Q 012646 246 TGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQ-MITCQVIVSIILGLKFG 323 (459)
Q Consensus 246 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 323 (459)
........+.|.+.++ +|.++.+.+.......++.+++.++.+++.||.+++ ...+... ...+...+.....
T Consensus 213 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~---- 286 (375)
T 2gfp_A 213 AGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF---- 286 (375)
T ss_dssp HHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh----
Confidence 4455666677777665 888888999999999999999999999999998872 2222222 1222111111100
Q ss_pred CCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 012646 324 PNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFL 403 (459)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 403 (459)
...+.+.......+.+.+.+.. .+....+..|..| ++|+++.|+.+....+|..++|.+.+.+.+..++...+
T Consensus 287 -----~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 359 (375)
T 2gfp_A 287 -----GVMNVWTLLVPAALFFFGAGML-FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGL 359 (375)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHT-SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHH
T ss_pred -----ccccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 0112333344445555555543 4455677889998 89999999999999999999999999998877766655
Q ss_pred HHHHH
Q 012646 404 FFAGW 408 (459)
Q Consensus 404 ~~~~~ 408 (459)
...+.
T Consensus 360 ~~~~~ 364 (375)
T 2gfp_A 360 LMTLM 364 (375)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=238.13 Aligned_cols=152 Identities=14% Similarity=0.165 Sum_probs=133.4
Q ss_pred cccccCCccc------CCchhhHHHHHHHHHHHHHHHHhHhhhhhhc-CcchhhhHHHHHHHHHHHHHHHHh-hHHHHHH
Q 012646 17 KHAHENNYCK------YDNQGLAAFTSSLYLAGLVASFVASPVTRDY-GRRASIICGGISFLLGAALNAAAA-NLAMLLT 88 (459)
Q Consensus 17 ~~~~~~~~~~------~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grk~~l~~~~~~~~~~~~~~~~~~-~~~~l~~ 88 (459)
.+....+++| ++..+.+++.+.+.++..+++++.|+++||+ |||+++..+.++.+++.+++++++ +++.+++
T Consensus 35 l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (524)
T 2xut_A 35 LTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYT 114 (524)
T ss_dssp HHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3333445567 9999999999999999999999999999999 999999999999999999999999 9999999
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHH---HHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHH
Q 012646 89 GRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMM---FQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMT 165 (459)
Q Consensus 89 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~ 165 (459)
.|++.|++.+...+...+++.|++|+++|+++.+. ...+.++|.+++|.+ .....+..|||+.|++.++..++..
T Consensus 115 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~--~~~l~~~~g~~~~f~~~~~~~~~~~ 192 (524)
T 2xut_A 115 GLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLS--MPLLLKNFGAAVAFGIPGVLMFVAT 192 (524)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHT--STHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999876666 899999999999998 4444555789999999888877665
Q ss_pred Hhhhc
Q 012646 166 VGGIL 170 (459)
Q Consensus 166 ~~~~~ 170 (459)
+..++
T Consensus 193 ~~~~~ 197 (524)
T 2xut_A 193 VFFWL 197 (524)
T ss_dssp HHHHS
T ss_pred HHHHH
Confidence 55443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-30 Score=240.00 Aligned_cols=365 Identities=12% Similarity=0.045 Sum_probs=221.8
Q ss_pred hhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHH---HHHHHhhH-HHHHHHH
Q 012646 15 KKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAA---LNAAAANL-AMLLTGR 90 (459)
Q Consensus 15 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~---~~~~~~~~-~~l~~~r 90 (459)
+..+...++++|+|+.+.|++.+.+.++..++++++|+++||+|||++++.+..+++++.. ...+++.. ..+...+
T Consensus 28 ~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (417)
T 2cfq_A 28 PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGS 107 (417)
T ss_dssp TTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445677899999999999999999999999999999999999999998887765322 22233322 1244566
Q ss_pred HHhhhhhhhhhhhhhhhhhhccCc--cchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhh
Q 012646 91 ILLGVGIGFGNQAVPLYLSEMAPT--HLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGG 168 (459)
Q Consensus 91 ~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~ 168 (459)
++.|++.+...+.....+.++.++ ++|+...+....+..+|..++|.++. ...+ .+||+.|++.++..++..+..
T Consensus 108 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~--~l~~-~~~~~~f~~~~~~~~~~~~~~ 184 (417)
T 2cfq_A 108 IVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG--IMFT-INNQFVFWLGSGCALILAVLL 184 (417)
T ss_dssp HGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHH--HHHH-HCSHHHHTTTTTTTTTHHHHS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHH--HHHH-hchhHHHHHHHHHHHHHHHHH
Confidence 777776665555555555555543 35566677777777888888888843 3222 479999998877765555555
Q ss_pred hccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcch
Q 012646 169 ILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGI 248 (459)
Q Consensus 169 ~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (459)
++.+|+++. +.+.++. ++ .+.++....+.++.++++..+.. .+..+.....+
T Consensus 185 ~~~~~~~~~---~~~~~~~----------~~-----------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 236 (417)
T 2cfq_A 185 FFAKTDAPS---SATVANA----------VG-----------ANHSAFSLKLALELFRQPKLWFL----SLYVIGVSCTY 236 (417)
T ss_dssp CSSCCCCSC---SSCSSSS----------SS-----------SCCCCCCHHHHHHHTTCHHHHHH----HHHHHHHHHHH
T ss_pred HHcCccccc---ccccccc----------cc-----------cccccccHHHHHHHhcCCchhhH----HHHHHHHHHHH
Confidence 554433311 0000000 00 00000000112334443332221 11112112222
Q ss_pred HHHHHhHHHHHHh-cCC---CCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCC
Q 012646 249 NSILFYAPVLFQS-MGF---KGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGP 324 (459)
Q Consensus 249 ~~~~~~~~~~~~~-~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (459)
.....+.|.++.+ ++. +....+....+..++.+++.++.+++.||++||+.+..+..+..+..+.+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~------- 309 (417)
T 2cfq_A 237 DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA------- 309 (417)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 3333445656544 332 23345667777778888999999999999999998877666655543333211
Q ss_pred CccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHH-HHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 012646 325 NQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSIT-VAVNLFFTFVIAQIFLTLLCSFKFGIFL 403 (459)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 403 (459)
.+.+..+....+......... +..+.+.+|.+|++.|+++.++. +....+|+.++|.+.|.+.++.++...+
T Consensus 310 ------~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f 382 (417)
T 2cfq_A 310 ------TSALEVVILKTLHMFEVPFLL-VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAY 382 (417)
T ss_dssp ------CSHHHHHHHTTHHHHHHHHHH-HHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHH
T ss_pred ------ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHH
Confidence 112222222222233322222 22356789999999999999994 8888999999999999999988876666
Q ss_pred HHHHHHHHHHHHH-HhccCCCC
Q 012646 404 FFAGWVTIMTIFV-YFFLPETK 424 (459)
Q Consensus 404 ~~~~~~~~~~~~~-~~~~~~~~ 424 (459)
.+.+++.+++.+. +...++++
T Consensus 383 ~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 383 LVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHHHHHHHHHHHhhhcCCC
Confidence 6555555555444 33444433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-13 Score=127.71 Aligned_cols=152 Identities=11% Similarity=-0.023 Sum_probs=117.9
Q ss_pred HHHHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHH
Q 012646 235 MAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIV 314 (459)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 314 (459)
....+..+.............|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+..+..++.++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 108 (438)
T 3o7q_A 29 ALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALF 108 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 33344444444445667777888888899999999999999999999999999999999999999999999888887776
Q ss_pred HHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 012646 315 SIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLL 394 (459)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 394 (459)
..... ..+.+..++..++.+.+.+.... ....+++|.+|+++|+.+.++.+....+|..++|.+.+.+.
T Consensus 109 ~~~~~----------~~~~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 109 WPAAE----------IMNYTLFLVGLFIIAAGLGCLET-AANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHH----------TTCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred Hhccc----------cccHHHHHHHHHHHHhhHHHhhh-hHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33210 12344455555556666554443 44688899999999999999999999999999999999988
Q ss_pred -hhc
Q 012646 395 -CSF 397 (459)
Q Consensus 395 -~~~ 397 (459)
+..
T Consensus 178 ~~~~ 181 (438)
T 3o7q_A 178 LSNV 181 (438)
T ss_dssp HTSS
T ss_pred hccc
Confidence 444
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-13 Score=130.48 Aligned_cols=180 Identities=14% Similarity=0.177 Sum_probs=131.3
Q ss_pred HHHHHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHH
Q 012646 234 VMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVI 313 (459)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 313 (459)
+....+..+.............|.+.+++ .+..+.++......++..++.++.|+++||+|||+.+..+..+..++.++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 108 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLF 108 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 34444444444444455666778887888 99999999999999999999999999999999999999998888888777
Q ss_pred HHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 012646 314 VSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTL 393 (459)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 393 (459)
....... ..+.+..++...+.+.+.+... +...+++.|.+|+++|+++.++.+....+|..++|.+.+.+
T Consensus 109 ~~~~~~~---------~~~~~~l~~~~~l~G~~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 109 MGFVPWA---------TSSIAVMFVLLFLCGWFQGMGW-PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHCHHH---------HSSSSHHHHHHHHHHHHHHHTH-HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHhhhhc---------cccHHHHHHHHHHHHHHhhhcc-chHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7651100 0223344455555555555443 44467889999999999999999999999999999999998
Q ss_pred Hhhch-hHHHHHHHHHHH-HHHHHHHhccCCCC
Q 012646 394 LCSFK-FGIFLFFAGWVT-IMTIFVYFFLPETK 424 (459)
Q Consensus 394 ~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 424 (459)
.+..+ |...+.+.++.. +..++..+..||++
T Consensus 179 ~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 211 (451)
T 1pw4_A 179 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTP 211 (451)
T ss_dssp HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 88777 765555544443 44445555666543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-12 Score=119.94 Aligned_cols=169 Identities=13% Similarity=0.107 Sum_probs=127.4
Q ss_pred hhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhh
Q 012646 242 FQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLK 321 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (459)
+.............|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---- 85 (375)
T 2gfp_A 10 AVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT---- 85 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh----
Confidence 3333444556666777778899999999999999999999999999999999999999999888888887776654
Q ss_pred cCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHH
Q 012646 322 FGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGI 401 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 401 (459)
++.+..+....+.+.+.+. ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.++.++..
T Consensus 86 ---------~~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 155 (375)
T 2gfp_A 86 ---------SSLTVLIAASAMQGMGTGV-GGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRA 155 (375)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred ---------ccHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHH
Confidence 2233344444444444443 334446788899999999999999999999999999999999988878776
Q ss_pred HHHHHHHHHHHHHH-HHhccCCCC
Q 012646 402 FLFFAGWVTIMTIF-VYFFLPETK 424 (459)
Q Consensus 402 ~~~~~~~~~~~~~~-~~~~~~~~~ 424 (459)
.+...++..+...+ ..+..||++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 156 CYLFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHCcccC
Confidence 66655555444444 444555543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-12 Score=125.53 Aligned_cols=164 Identities=15% Similarity=0.132 Sum_probs=120.5
Q ss_pred HhhhhcchHHHHHhHHHHHH-h-----cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhh-cCCchhhhhhhHHHHHHHHH
Q 012646 241 MFQILTGINSILFYAPVLFQ-S-----MGFKGDASLYSSAMTGAVLASSTLISIATVDK-LGRRALLISGGIQMITCQVI 313 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~-~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~ 313 (459)
.+.....+.....+.+.+++ . +|.+..+.++......++..++.++.|+++|| +|||+.+..+..+..++.++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~ 101 (491)
T 4aps_A 22 EMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIV 101 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 33333344445455555544 4 89999999999999999999999999999999 89999999988887777666
Q ss_pred HHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccc--cchhhHHHHHHHHHHHHHHHHHHH
Q 012646 314 VSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLET--RSAGQSITVAVNLFFTFVIAQIFL 391 (459)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~~ 391 (459)
.... ++.+...+...+.+.+.+... +...++++|.+|++. |+.+.++.+....+|..++|.+.+
T Consensus 102 ~~~~-------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 167 (491)
T 4aps_A 102 LALP-------------FGASALFGSIILIIIGTGFLK-PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVG 167 (491)
T ss_dssp HHSC-------------CSTTHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-------------hhHHHHHHHHHHHHHHHHhcc-chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHH
Confidence 5432 223344444555555555433 444678899999988 777888899999999999999999
Q ss_pred HHHhhchhHHHHHHHHHHHHHHHHHHh
Q 012646 392 TLLCSFKFGIFLFFAGWVTIMTIFVYF 418 (459)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (459)
.+.++.+|...+...++..+.+.+...
T Consensus 168 ~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 168 AAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999988887766666555555444443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.8e-12 Score=121.72 Aligned_cols=161 Identities=12% Similarity=0.068 Sum_probs=118.5
Q ss_pred chHHHHHhHHHHHH-hcC------CCCchhHHHHHHHHHHHHHHhHHHHHHHhhc-CCchhhhhhhHHHHHHHHHHHHHH
Q 012646 247 GINSILFYAPVLFQ-SMG------FKGDASLYSSAMTGAVLASSTLISIATVDKL-GRRALLISGGIQMITCQVIVSIIL 318 (459)
Q Consensus 247 ~~~~~~~~~~~~~~-~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~ 318 (459)
.+.....+.+.+++ ++| ++..+.++......++..++.++.|+++||+ |||+.+..+..+..++.++....
T Consensus 27 ~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~- 105 (524)
T 2xut_A 27 SFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF- 105 (524)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh-
Confidence 34445555665554 588 9999999999999999999999999999999 99999988888777776665542
Q ss_pred hhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHH---HHHHHHHHHHHHHHHHHHHHh
Q 012646 319 GLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSI---TVAVNLFFTFVIAQIFLTLLC 395 (459)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~~~~~~~~~ 395 (459)
..+.+..++...+.+.+.+.. .+...+++.|.+|++.|++..+. .+....+|..++|.+.+.+.+
T Consensus 106 -----------~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 173 (524)
T 2xut_A 106 -----------EHSVQGFYTGLFLIALGSGGI-KPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK 173 (524)
T ss_dssp -----------SSCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH
T ss_pred -----------cccHHHHHHHHHHHHHhcccc-chhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 112344444455555555533 34446788999999999876666 888899999999999999988
Q ss_pred hchhHHHHHHHHHHHHHHHHHHhcc
Q 012646 396 SFKFGIFLFFAGWVTIMTIFVYFFL 420 (459)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (459)
..++...+.+.+++.+...+.....
T Consensus 174 ~~g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 174 NFGAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHh
Confidence 8887766666665555555544443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-12 Score=122.38 Aligned_cols=146 Identities=12% Similarity=0.113 Sum_probs=120.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhhh
Q 012646 28 DNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLY 107 (459)
Q Consensus 28 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 107 (459)
+....++..+...++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888999999999999999999999999988888887777777788888888888888877777777889
Q ss_pred hhhccCccchhHHHHH-HHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhh-hccCCCh
Q 012646 108 LSEMAPTHLRGGLNMM-FQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGG-ILLPETP 175 (459)
Q Consensus 108 i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~es~ 175 (459)
+.|.+|++.|+.+.+. ++....+|.+++|.+ .+...+..|++..|.+.++..++..+.. ...||.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l--~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL--AGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHH--HHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhh--HHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999998 477888999999998 4455556688999998888877776654 4466654
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=4.8e-10 Score=107.29 Aligned_cols=152 Identities=15% Similarity=0.077 Sum_probs=106.8
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHhhhhhh
Q 012646 24 YCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAA-----NLAMLLTGRILLGVGIG 98 (459)
Q Consensus 24 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~~ 98 (459)
+.+.+............+...++.++.+.+.||+|||+.++.+.....++.+..+... +...+...-+..+....
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (491)
T 4gc0_A 306 TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAM 385 (491)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred hcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh
Confidence 3455666677777778888899999999999999999999999988888877665432 12222222222222222
Q ss_pred hhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhcc----ccccchhHHHHHhhHHHHHHHHHhh-hccCC
Q 012646 99 FGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQ----KLETWGWRLSLGLAAAPALMMTVGG-ILLPE 173 (459)
Q Consensus 99 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~----~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~e 173 (459)
...+....+.+|.+|.+.|++++++......+|..+++.+..... .....++.+.|++.++++++..+.. +++||
T Consensus 386 ~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 386 SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 344667789999999999999999999988888888776521111 1122356667888888887776654 66899
Q ss_pred Ch
Q 012646 174 TP 175 (459)
Q Consensus 174 s~ 175 (459)
|.
T Consensus 466 Tk 467 (491)
T 4gc0_A 466 TK 467 (491)
T ss_dssp CT
T ss_pred CC
Confidence 86
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 459 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 7e-12 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 2e-04 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 64.7 bits (156), Expect = 7e-12
Identities = 55/399 (13%), Positives = 110/399 (27%), Gaps = 30/399 (7%)
Query: 32 LAAFTSSLYLAGLVASFVASPVTRDYGRR----ASIICGGISFLLGAALNAAAANLAMLL 87
L S + +A + F+ V+ R A +I L + A +++A++
Sbjct: 61 LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF 120
Query: 88 TGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLET 147
L G G G + RGG+ ++ A +G ++
Sbjct: 121 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 180
Query: 148 WGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDM 207
A L+ ++ +TP S + + E + +
Sbjct: 181 DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQI 240
Query: 208 VDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGD 267
L N L +F L + + L + F D
Sbjct: 241 FMQYVLPN---------------KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD 285
Query: 268 ASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQE 327
S ++ + TL+ DK+ R +G M + +
Sbjct: 286 KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW--------- 336
Query: 328 LSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIA 387
++ + + V ++ + + + L E+ P + T V A
Sbjct: 337 MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAA 396
Query: 388 QIFLTLLCSF--KFGIFLFFAGWVTIMTIFVYFFLPETK 424
+ F G F+ G + I + + K
Sbjct: 397 SAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 435
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 41.3 bits (95), Expect = 2e-04
Identities = 34/406 (8%), Positives = 90/406 (22%), Gaps = 47/406 (11%)
Query: 32 LAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNA----AAANLAMLL 87
+++ L L+ + ++ G R ++ L+ A +L
Sbjct: 45 TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNIL 104
Query: 88 TGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLET 147
G I+ G+ +GF A + R + + A +
Sbjct: 105 VGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI 164
Query: 148 WGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDM 207
+ + ++ + + P+S
Sbjct: 165 NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSL-------------- 210
Query: 208 VDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGD 267
+ + + G++ F +
Sbjct: 211 -------------------KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFF 251
Query: 268 ASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQE 327
A+ + + + A++ + GG + + +
Sbjct: 252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVR-------II 304
Query: 328 LSKSFSILVVVVICLFVLAFGWS-WGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVI 386
S + + VVI + F + + F + + + +
Sbjct: 305 GSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF 364
Query: 387 AQIFLTLLCSFK--FGIFLFFAGWVTIMTIFVYFFLPETKGVPIEE 430
+ + G +L T+ F L + +
Sbjct: 365 MSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 459 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.47 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.42 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.2e-37 Score=289.52 Aligned_cols=386 Identities=13% Similarity=0.032 Sum_probs=262.4
Q ss_pred hhhhhhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHh----
Q 012646 6 QKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAA---- 81 (459)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~---- 81 (459)
..|+++...+...+..+ |+|+|++|+|++.+++.++++++++++|+++||+|||+++..+.++.+++.+++++++
T Consensus 36 ~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (447)
T d1pw4a_ 36 AYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS 114 (447)
T ss_dssp HHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHS
T ss_pred HHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhh
Confidence 34444444555555554 5799999999999999999999999999999999999999999999999999988764
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHH
Q 012646 82 NLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPA 161 (459)
Q Consensus 82 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~ 161 (459)
+++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.++.... ....+||+.|++.+++.
T Consensus 115 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~-~~~~~w~~~~~~~~~~~ 193 (447)
T d1pw4a_ 115 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM-AWFNDWHAALYMPAFCA 193 (447)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH-HHTCCSTTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHh-hhhhcccccchhhhhhH
Confidence 67899999999999999999999999999999999999999999999999999998743222 22347999999988888
Q ss_pred HHHHHhh-hccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHH
Q 012646 162 LMMTVGG-ILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMP 240 (459)
Q Consensus 162 ~~~~~~~-~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (459)
++..++. .+.+|+|+........+.. .+ ..++..+..+++ ....+...+.....+..+.....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 257 (447)
T d1pw4a_ 194 ILVALFAFAMMRDTPQSCGLPPIEEYK------------ND-YPDDYNEKAEQE---LTAKQIFMQYVLPNKLLWYIAIA 257 (447)
T ss_dssp HHHHHHHHHHCCCSSTTTCCCSCTTTC------------CC-----------------CCTHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHhcccchhhcccchhhhhh------------hh-cccchhhccccc---cchhhHHHHHHHcCchHHHHHHH
Confidence 7765554 4466666432111111000 00 000000000000 11111111222222334444444
Q ss_pred HhhhhcchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHh
Q 012646 241 MFQILTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILG 319 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (459)
.++..........+.|.++.+ ++++..+.+.......+..+++.++.+++.||.+|++..........+..........
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (447)
T d1pw4a_ 258 NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM 337 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHh
Confidence 444444556667777777665 8999999999999999999999999999999999887655444433333332222210
Q ss_pred hhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHH-HHHHHHHHHHHHhhch
Q 012646 320 LKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFF-TFVIAQIFLTLLCSFK 398 (459)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g-~~~~~~~~~~~~~~~~ 398 (459)
....+.+...+..++.+.+.. ...+....+..|.+|++.|+++.|+.+..++++ ..++|.+.|.+.++.|
T Consensus 338 --------~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g 408 (447)
T d1pw4a_ 338 --------NPAGNPTVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 408 (447)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred --------cccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 011223333333344333333 333444677789999999999999999988875 5667899999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 012646 399 FGIFLFFAGWVTIMTIFVYF 418 (459)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~ 418 (459)
+...+.+.+.+.+.+.++..
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 409 WDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 76655555555444444433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.5e-29 Score=235.13 Aligned_cols=372 Identities=12% Similarity=0.036 Sum_probs=233.2
Q ss_pred hhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHH----H
Q 012646 11 DVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAM----L 86 (459)
Q Consensus 11 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~----l 86 (459)
..+.+..+...++++|+|+.++|++.+++.++..++++++|+++||+||||+++.+..+..++..+..+..+... .
T Consensus 24 ~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (417)
T d1pv7a_ 24 GAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNI 103 (417)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 344455555566778999999999999999999999999999999999999999999999999888888766544 3
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhccCc--cchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHH
Q 012646 87 LTGRILLGVGIGFGNQAVPLYLSEMAPT--HLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMM 164 (459)
Q Consensus 87 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~ 164 (459)
++.+.+.+.+.+...........+..++ +++.+..+........+..+++.++ ....+ .+|+..+........+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~-~~~~~~~~~~~~~~~~~ 180 (417)
T d1pv7a_ 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIV--GIMFT-INNQFVFWLGSGCALIL 180 (417)
T ss_dssp HHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHH--HHHHH-HCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccc--ccccc-ccccccccchhhHHHHH
Confidence 4555666666555555555444444432 3445566777777888888888874 33222 24555555555444444
Q ss_pred -HHhhhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhh
Q 012646 165 -TVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQ 243 (459)
Q Consensus 165 -~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (459)
.+..+..+|+|+....+ ++ ++.+.++.......+..+.+..+............
T Consensus 181 ~~~~~~~~~~~~~~~~~~---~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (417)
T d1pv7a_ 181 AVLLFFAKTDAPSSATVA---NA----------------------VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT 235 (417)
T ss_dssp HHHHHSSCCCSCSSSCSS---HH----------------------HHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccchhhh---hh----------------------hhhhcccccccccccccccccccchhhhhHHHHHH
Confidence 44455566665321100 00 00000011111112222222222222222222221
Q ss_pred hhcchHHHHHhHHHHHHh----cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHh
Q 012646 244 ILTGINSILFYAPVLFQS----MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILG 319 (459)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (459)
. .......+.+... .+.+....+.......++..++..+.+++.||.++|+.+..+..+..++.+.+...
T Consensus 236 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-- 309 (417)
T d1pv7a_ 236 Y----DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-- 309 (417)
T ss_dssp H----HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred H----HhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc--
Confidence 1 2222222222222 22334455667777888899999999999999999999988877777766555432
Q ss_pred hhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHH-HHHHHHHHHHHHHHHHHHhhch
Q 012646 320 LKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITV-AVNLFFTFVIAQIFLTLLCSFK 398 (459)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~ 398 (459)
++.+.......+.+.+.+... +....+..|.+|++.|+++.|+.. ....+|..++|.+.|.+.|+.|
T Consensus 310 -----------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g 377 (417)
T d1pv7a_ 310 -----------TSALEVVILKTLHMFEVPFLL-VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG 377 (417)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC
T ss_pred -----------cccchhhHHHHHHHHHHHHHH-HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 234444555555555555444 344678899999999999999864 5677999999999999999998
Q ss_pred hHHHHHHHH-HHHHHHHHHHhccCCCCCCCH
Q 012646 399 FGIFLFFAG-WVTIMTIFVYFFLPETKGVPI 428 (459)
Q Consensus 399 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 428 (459)
+...+.+.+ +..+..++..+.++++++.+.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 408 (417)
T d1pv7a_ 378 FQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCSSCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCccch
Confidence 765554444 444455555566665555544
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=5.6e-14 Score=130.59 Aligned_cols=162 Identities=15% Similarity=0.141 Sum_probs=116.3
Q ss_pred HHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCCCccccc
Q 012646 251 ILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSK 330 (459)
Q Consensus 251 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (459)
+....|.+ ++.|++..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.++....... .
T Consensus 44 ~~~~~p~~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~---------~ 113 (447)
T d1pw4a_ 44 FALAMPYL-VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA---------T 113 (447)
T ss_dssp HHHHHHHT-TSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH---------H
T ss_pred HHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchh---------h
Confidence 44445544 5689999999999999999999999999999999999999999988888877766543211 1
Q ss_pred hhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc-hhHH-HHHHHHH
Q 012646 331 SFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSF-KFGI-FLFFAGW 408 (459)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-~~~~-~~~~~~~ 408 (459)
.+.+..++...+.+.+.+.... ....++.|.+|+++|+++.++.+....+|..+++.+.+...+.. +|.. ++....+
T Consensus 114 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~ 192 (447)
T d1pw4a_ 114 SSIAVMFVLLFLCGWFQGMGWP-PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFC 192 (447)
T ss_dssp SSSSHHHHHHHHHHHHHHHTHH-HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhhhhh-HHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhh
Confidence 1233344444455555444433 33577889999999999999999999999999999888776654 3433 3333444
Q ss_pred HHHHHHHHHhccCCC
Q 012646 409 VTIMTIFVYFFLPET 423 (459)
Q Consensus 409 ~~~~~~~~~~~~~~~ 423 (459)
..+..++.+...++.
T Consensus 193 ~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 193 AILVALFAFAMMRDT 207 (447)
T ss_dssp HHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHhcccc
Confidence 444555555555544
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=3.2e-13 Score=123.69 Aligned_cols=150 Identities=11% Similarity=0.091 Sum_probs=131.4
Q ss_pred CCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhh
Q 012646 22 NNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGN 101 (459)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 101 (459)
.++.+.+....+...+...++..++..+.+++.||+|||+.+..+.++.+++.++..+.++.+.+++..++.|++.+...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 330 (417)
T d1pv7a_ 251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLL 330 (417)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHH
Confidence 34456677788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccCccchhHHHHHH-HHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhc-cCC
Q 012646 102 QAVPLYLSEMAPTHLRGGLNMMF-QLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGIL-LPE 173 (459)
Q Consensus 102 ~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e 173 (459)
+...+++.|.+|+++|+++.++. +....+|..++|.+ .+...+..||+..|++.+++.++..++..+ +++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~--~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL--AGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHH--HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999975 56678999999998 566667789999999988888777665544 443
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