Citrus Sinensis ID: 012647

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
Protein Sequence
MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHccccccccccccccccHHHHHcccccccccccccccccccccccccccccHHHHHHcccccccccccccEEEccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccHHHccccEEEEEccccHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHccccccEEEEEccccccccccccHHHHHHHHHHHHHcccccEEEcccccccccccHHHHHHHHHHHHccccEEEEEccccccccccccccEEEEEcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHccEEEEcccccEEccccccccHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHcccccccccEEHcHHccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccHHHHHHHHcccccEEccccccccccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccHHHHcccEEEEEEEHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHcccEEEEEEcEEccccEEcHHHHHHHHHHcccccEEEEEccccccccccccHHHHHHHHHHHHHHccEEEEEEcccccccccHHHHcHHHHHHHHcccccEEEEEcccccccHHHcEEEEEEEcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHccccEEEccccHHHHHHHHHHHcEEcccccEEEHHHcccccHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MASTMLSIasatpsaslsmHEKLKGKvklgsttnstagfiktksfGRVSMVAAVNvsrfegvtmappdpilgvseafkadtdekklnlgvgayrteelqPYVLDVVKKAENLMlergenkeylpieGLAAFNKVTAELLfgadnsvlKEQRVATVQGLSGTGSLRLAAALIERYFPgakvlissptwgnhknifndarvpwseyryydpktvgldfEGMIADikaapggsfillhgcahnptgidptpeQWEKIADVIQEknhipffdvayqgfasgsldndassVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLarpmysnppvhgARIVANvvgnpalfDEWKAEMEMMAGRIKNVRQKLFDSlsakdksgkdWSFILRQIGMfsftglnkaqsdnmtnKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS
Flexible Loop (DISEMBL)
mastmlsiasatpsaslsMHEKLKGKvklgsttnstagfiktksfgrVSMVAAVNVSrfegvtmappdpILGVSEAFKADTDEKKLnlgvgayrteelqpyvLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATvqglsgtgSLRLAAALIERYFPGAKVLissptwgnhknifndarvpwsEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARpmysnppvhgaRIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSlsakdksgkdWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS
Low Complexity Region (SEG)
MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS
Disordered region (IsUnstruct)
************************************AGFIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS****SGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSY****
Disordered Region (DISOPRED)
********************************************************SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNV*
Disordered Region (DISEMBL)
*******************HEKLKGKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS
Disordered Region (DISPRO)
************************************************SM********FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	459	2.2.26 [Sep-21-2011]
P46248	453	Aspartate aminotransferas	yes	no	0.986	1.0	0.847	0.0
P26563	454	Aspartate aminotransferas	N/A	no	0.958	0.969	0.845	0.0
P37833	407	Aspartate aminotransferas	no	no	0.858	0.968	0.560	1e-134
P28734	405	Aspartate aminotransferas	N/A	no	0.858	0.972	0.570	1e-134
P28011	418	Aspartate aminotransferas	N/A	no	0.858	0.942	0.555	1e-131
P46645	405	Aspartate aminotransferas	no	no	0.858	0.972	0.545	1e-131
P46644	449	Aspartate aminotransferas	no	no	0.858	0.877	0.545	1e-130
Q54SF7	438	Aspartate aminotransferas	yes	no	0.854	0.894	0.556	1e-126
Q55F21	426	Aspartate aminotransferas	no	no	0.904	0.974	0.505	1e-123
P12344	430	Aspartate aminotransferas	yes	no	0.847	0.904	0.529	1e-121

>sp|P46248|AAT5_ARATH Aspartate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=ASP5 PE=1 SV=2

 Score =  805 bits (2079), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/459 (84%), Positives = 417/459 (90%), Gaps = 6/459 (1%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFE 60
           MAS MLS+ S     SL   E  K K+KLG  T+++  F+K KSF RV+M  AV  SRFE
Sbjct: 1   MASLMLSLGST----SLLPREINKDKLKLG--TSASNPFLKAKSFSRVTMTVAVKPSRFE 54

Query: 61  GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK 120
           G+TMAPPDPILGVSEAFKADT+  KLNLGVGAYRTEELQPYVL+VVKKAENLMLERG+NK
Sbjct: 55  GITMAPPDPILGVSEAFKADTNGMKLNLGVGAYRTEELQPYVLNVVKKAENLMLERGDNK 114

Query: 121 EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV 180
           EYLPIEGLAAFNK TAELLFGA + V+KEQRVAT+QGLSGTGSLRLAAALIERYFPGAKV
Sbjct: 115 EYLPIEGLAAFNKATAELLFGAGHPVIKEQRVATIQGLSGTGSLRLAAALIERYFPGAKV 174

Query: 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
           +ISSPTWGNHKNIFNDA+VPWSEYRYYDPKT+GLDFEGMIADIK AP GSFILLHGCAHN
Sbjct: 175 VISSPTWGNHKNIFNDAKVPWSEYRYYDPKTIGLDFEGMIADIKEAPEGSFILLHGCAHN 234

Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTGIDPTPEQW KIADVIQEKNHIPFFDVAYQGFASGSLD DA+SVRLFA RGME  VAQ
Sbjct: 235 PTGIDPTPEQWVKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFAERGMEFFVAQ 294

Query: 301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPA 360
           SYSKNLGLYAERIGA+NVVCSS+D A RVKSQLKR+ARPMYSNPPVHGARIVANVVG+  
Sbjct: 295 SYSKNLGLYAERIGAINVVCSSADAATRVKSQLKRIARPMYSNPPVHGARIVANVVGDVT 354

Query: 361 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNM 420
           +F EWKAEMEMMAGRIK VRQ+L+DSL +KDKSGKDWSFIL+QIGMFSFTGLNKAQSDNM
Sbjct: 355 MFSEWKAEMEMMAGRIKTVRQELYDSLVSKDKSGKDWSFILKQIGMFSFTGLNKAQSDNM 414

Query: 421 TNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 459
           T+KWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS
Sbjct: 415 TDKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 453

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 1

>sp|P26563|AATM_LUPAN Aspartate aminotransferase P2, mitochondrial (Fragment) OS=Lupinus angustifolius PE=2 SV=1

 Score =  784 bits (2025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/441 (84%), Positives = 403/441 (91%), Gaps = 1/441 (0%)

Query: 20  HEKLK-GKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFK 78
           ++KLK G   L  +   +  F   KS  R+SMVAAVNVSRFEG+ MAPPDPILGVSEAF+
Sbjct: 14  NDKLKVGGNSLRFSKEQSNTFSNAKSSCRISMVAAVNVSRFEGIPMAPPDPILGVSEAFR 73

Query: 79  ADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL 138
           ADT + KLNLGVGAYRTEELQPYVL VV KAENLMLERG+NKEYL IEGLAAFNK TAEL
Sbjct: 74  ADTSDAKLNLGVGAYRTEELQPYVLKVVNKAENLMLERGQNKEYLAIEGLAAFNKATAEL 133

Query: 139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDAR 198
           L GADN  +K+QRVATVQGLSGTGSLRL AALIERYFPGAKVLIS+PTWGNHKNIFNDAR
Sbjct: 134 LLGADNPAIKQQRVATVQGLSGTGSLRLGAALIERYFPGAKVLISAPTWGNHKNIFNDAR 193

Query: 199 VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVI 258
           VPWSEYRYYDPKTVGLDFEGMI DIKAAP G+F+LLHGCAHNPTGIDPTPEQWEKIADVI
Sbjct: 194 VPWSEYRYYDPKTVGLDFEGMIEDIKAAPEGTFVLLHGCAHNPTGIDPTPEQWEKIADVI 253

Query: 259 QEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV 318
           QEKNHIPFFDVAYQGFASGSLD DA+SVRLF  RG+E+LVAQSYSKNLGLYAERIGA+NV
Sbjct: 254 QEKNHIPFFDVAYQGFASGSLDEDAASVRLFVARGLEVLVAQSYSKNLGLYAERIGAINV 313

Query: 319 VCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN 378
           + SS + AARVKSQLKR+ARPMYSNPPVHGARIVA++VGNPALFDEWK EMEMMAGRIKN
Sbjct: 314 ISSSPESAARVKSQLKRIARPMYSNPPVHGARIVADIVGNPALFDEWKVEMEMMAGRIKN 373

Query: 379 VRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAG 438
           VRQ+L+DS+S+KDKSGKDWSFIL+QIGMFS+TGLNK QSDNMTNKWHVYMTKDGRISLAG
Sbjct: 374 VRQQLYDSISSKDKSGKDWSFILKQIGMFSYTGLNKNQSDNMTNKWHVYMTKDGRISLAG 433

Query: 439 LSLAKCEYLADAIIDSYHNVS 459
           LSLAKCEYLADAIIDS+H VS
Sbjct: 434 LSLAKCEYLADAIIDSFHYVS 454

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.

Lupinus angustifolius (taxid: 3871)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P37833|AATC_ORYSJ Aspartate aminotransferase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os01g0760600 PE=2 SV=1

 Score =  479 bits (1234), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 222/396 (56%), Positives = 295/396 (74%), Gaps = 2/396 (0%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S F G+  AP DPILGV+ A+  D    K+NLGVGAYRTEE +P VL+VV++AE +++  
Sbjct: 5   SVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQMLINN 64

Query: 117 GEN-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
               KEYLPI GLA FNK++A+L+FGAD+  ++E RVATVQ LSGTGSLR+    + R++
Sbjct: 65  PSRVKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHY 124

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
               + I  PTWGNH  +F  A +    YRYYDP T GLDF+G++ D+ +AP G+ +LLH
Sbjct: 125 HERTIYIPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDLGSAPSGAIVLLH 184

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DPT +QWE+I  +++ K  +PFFD AYQGFASGSLD DA SVR+F   G E
Sbjct: 185 ACAHNPTGVDPTLDQWEQIRQLMRSKALLPFFDSAYQGFASGSLDQDAQSVRMFVADGGE 244

Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV 355
           LL+AQSY+KN+GLY ER+GA+++VC S+D+A RV+SQLK + RPMYSNPP+HGA IVA +
Sbjct: 245 LLMAQSYAKNMGLYGERVGALSIVCGSADVAVRVESQLKLVIRPMYSNPPIHGASIVATI 304

Query: 356 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKA 415
           + + A+F+EW  E++ MA RI ++RQ+LFD+L  ++  G DWS I++QIGMF+FTGLN  
Sbjct: 305 LKDSAMFNEWTVELKGMADRIISMRQQLFDALKTRETPG-DWSHIIKQIGMFTFTGLNSD 363

Query: 416 QSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
           Q   M  ++H+YMT DGRIS+AGLS     +LADAI
Sbjct: 364 QVAFMRQEYHIYMTSDGRISMAGLSGRTIPHLADAI 399

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P28734|AATC_DAUCA Aspartate aminotransferase, cytoplasmic OS=Daucus carota PE=2 SV=1

 Score =  478 bits (1229), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 226/396 (57%), Positives = 298/396 (75%), Gaps = 2/396 (0%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-E 115
           S F  V  AP DPILGV+ A+  D    KLNLGVGAYRTEE +P VL+VVKKAE +++ +
Sbjct: 3   SVFANVVRAPEDPILGVTVAYHKDQSPNKLNLGVGAYRTEEGKPLVLNVVKKAEQMLVND 62

Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
           +   KEYLPI GLA FNK++A+L+FGAD+  ++E RVATVQ LSGTGSLR+    + R++
Sbjct: 63  QSRVKEYLPIVGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHY 122

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
               V I  PTWGNH  IF  A +    YRYY+P+T GLDFEGM+ D+ +AP G+ +LLH
Sbjct: 123 HEHTVYIPQPTWGNHPKIFTLAGLSVKTYRYYNPETRGLDFEGMLEDLGSAPLGAIVLLH 182

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DPT EQWE+I  +++ K+ +PFFD AYQGFASGSLD DA SVR+F   G E
Sbjct: 183 ACAHNPTGVDPTIEQWEQIRQLMRSKSLLPFFDSAYQGFASGSLDADAQSVRIFVADGGE 242

Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV 355
            L AQSY+KN+GLY ER+GA+++VC ++D+A++V+SQLK + RPMYS+PP+HGA IVA +
Sbjct: 243 CLAAQSYAKNMGLYGERVGALSIVCKTADVASKVESQLKLVIRPMYSSPPLHGASIVAAI 302

Query: 356 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKA 415
           + +  L++EW  E++ MA RI ++RQ+LF++L AK   G DWS I++QIGMF+FTGLN  
Sbjct: 303 LKDGDLYNEWTLELKAMADRIISMRQELFNALQAKGTPG-DWSHIVKQIGMFTFTGLNSE 361

Query: 416 QSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
           Q   MTN++H+Y+T DGRIS+AGLS     +LADAI
Sbjct: 362 QVTFMTNEYHIYLTSDGRISMAGLSSRTVPHLADAI 397

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P28011|AAT1_MEDSA Aspartate aminotransferase 1 OS=Medicago sativa GN=AAT-1 PE=2 SV=2

 Score =  469 bits (1208), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 220/396 (55%), Positives = 294/396 (74%), Gaps = 2/396 (0%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-E 115
           S F  +  AP DPILGV+ A+  D    KLNLGVGAYRTEE +P VLDVV++ E  +L +
Sbjct: 16  SVFAHLVRAPEDPILGVTVAYNKDPSPIKLNLGVGAYRTEEGKPLVLDVVRRVERQLLND 75

Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
              NKEY+PI GLA FNK++A+L+FGAD+  ++E RV TVQGLSGTGSLR+    + +++
Sbjct: 76  MSRNKEYIPIVGLADFNKLSAKLIFGADSPAIQENRVTTVQGLSGTGSLRVGGEFLAKHY 135

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
               + + +PTWGNH  +FN A +    YRYY P T GLDF+G++ D+ +AP GS +LLH
Sbjct: 136 HQRIIYLPTPTWGNHTKVFNLAGLTVKTYRYYAPATRGLDFQGLLEDLGSAPSGSVVLLH 195

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DPT EQWE+I  +I+ K+ +PFFD AYQGFASGSLD DA  VRLF   G E
Sbjct: 196 ACAHNPTGVDPTLEQWEQIRQLIRSKSLLPFFDSAYQGFASGSLDADAQPVRLFVADGGE 255

Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV 355
           LLVAQSY+KN+GLY ER+GA+++V  S+D+++RV+SQLK + RPMYS+PP+HGA IVA +
Sbjct: 256 LLVAQSYAKNMGLYGERVGALSIVSKSADVSSRVESQLKLVIRPMYSSPPIHGASIVAAI 315

Query: 356 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKA 415
           + +  L+++W  E++ MA RI N+RQ+LFD+L A+   G DWS I++QIGMF+FTGLN  
Sbjct: 316 LKDRDLYNDWTIELKAMADRIINMRQQLFDALRARGTPG-DWSHIIKQIGMFTFTGLNPE 374

Query: 416 QSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
           Q   +T ++H+Y+T DGRIS+AGLS     +LA AI
Sbjct: 375 QVSILTKEYHIYLTSDGRISMAGLSSKTVPHLAHAI 410

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P46645|AAT2_ARATH Aspartate aminotransferase, cytoplasmic isozyme 1 OS=Arabidopsis thaliana GN=ASP2 PE=1 SV=2

 Score =  468 bits (1203), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 216/396 (54%), Positives = 296/396 (74%), Gaps = 2/396 (0%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAEN-LMLE 115
           S F  V  AP DPILGV+ A+  D    K+NLGVGAYRTEE +P VLDVV+KAE  L+ +
Sbjct: 3   SVFSNVARAPEDPILGVTVAYNNDPSPVKINLGVGAYRTEEGKPLVLDVVRKAEQQLVND 62

Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
               KEY+PI G++ FNK++A+L+ GAD+  + E RV TVQ LSGTGSLR+ A  ++ ++
Sbjct: 63  PSRVKEYIPIVGISDFNKLSAKLILGADSPAITESRVTTVQCLSGTGSLRVGAEFLKTHY 122

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
             + + I  PTWGNH  +FN A +    +RYYDP T GLDF+G++ D+ AAP G+ +LLH
Sbjct: 123 HQSVIYIPKPTWGNHPKVFNLAGLSVEYFRYYDPATRGLDFKGLLEDLGAAPSGAIVLLH 182

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DPT EQWE+I  +++ K+ +PFFD AYQGFASGSLD DA SVR F   G E
Sbjct: 183 ACAHNPTGVDPTSEQWEQIRQLMRSKSLLPFFDSAYQGFASGSLDTDAQSVRTFVADGGE 242

Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV 355
            L+AQSY+KN+GLY ER+GA+++VC S+D+A++V+SQ+K + RPMYS+PP+HGA IVA +
Sbjct: 243 CLIAQSYAKNMGLYGERVGALSIVCKSADVASKVESQVKLVVRPMYSSPPIHGASIVATI 302

Query: 356 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKA 415
           + +  +++ W  E++ MA RIK++RQ+LF+++ A+   G DWS I++QIGMF+FTGLNK 
Sbjct: 303 LKSSDMYNNWTIELKEMADRIKSMRQQLFEAIQARGTPG-DWSHIIKQIGMFTFTGLNKE 361

Query: 416 QSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
           Q + MT ++H+YMT DGRIS+AGLS     +LADA+
Sbjct: 362 QVEFMTKEFHIYMTSDGRISMAGLSSKTVPHLADAM 397

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P46644|AAT3_ARATH Aspartate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=ASP3 PE=1 SV=1

 Score =  463 bits (1192), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 216/396 (54%), Positives = 290/396 (73%), Gaps = 2/396 (0%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-E 115
           S F  +  AP DPILGV+ A+  D    KLNLGVGAYRTEE +P VL+VV+KAE  ++ +
Sbjct: 47  SVFSHLVQAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQQLIND 106

Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
           R   KEYLPI GL  FNK++A+L+ GAD+  ++E R+ TV+ LSGTGSLR+    + +++
Sbjct: 107 RTRIKEYLPIVGLVEFNKLSAKLILGADSPAIRENRITTVECLSGTGSLRVGGEFLAKHY 166

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
               + I+ PTWGNH  IF  A +    YRYYDP T GL+F+G++ D+ AA  GS +LLH
Sbjct: 167 HQKTIYITQPTWGNHPKIFTLAGLTVKTYRYYDPATRGLNFQGLLEDLGAAAPGSIVLLH 226

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DPT +QWE+I  +++ K  +PFFD AYQGFASGSLD DA  +R+F   G E
Sbjct: 227 ACAHNPTGVDPTIQQWEQIRKLMRSKGLMPFFDSAYQGFASGSLDTDAKPIRMFVADGGE 286

Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV 355
            LVAQSY+KN+GLY ER+GA+++VC S+D+A RV+SQLK + RPMYS+PP+HGA IVA +
Sbjct: 287 CLVAQSYAKNMGLYGERVGALSIVCKSADVAGRVESQLKLVIRPMYSSPPIHGASIVAVI 346

Query: 356 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKA 415
           + +  LF+EW  E++ MA RI ++R++LF++L  +   G DWS I++QIGMF+FTGLN A
Sbjct: 347 LRDKNLFNEWTLELKAMADRIISMRKQLFEALRTRGTPG-DWSHIIKQIGMFTFTGLNPA 405

Query: 416 QSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
           Q   MT ++H+YMT DGRIS+AGLS     +LADAI
Sbjct: 406 QVSFMTKEYHIYMTSDGRISMAGLSSKTVPHLADAI 441

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|Q54SF7|AATC_DICDI Aspartate aminotransferase, cytoplasmic OS=Dictyostelium discoideum GN=aatB PE=3 SV=1

 Score =  451 bits (1160), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/397 (55%), Positives = 280/397 (70%), Gaps = 5/397 (1%)

Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           F  V + P DPILGVS AFKADTD +K++  VGAYR E  +PYVL  V +AE  +L  G 
Sbjct: 41  FANVPLGPVDPILGVSTAFKADTDPRKVDTSVGAYRDENGKPYVLKCVFEAEKRLL--GA 98

Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP-G 177
            KEYLPI+G+  FNK++A+LL+G D  V KE+R+ TVQ LSGTG+LR+    I +Y P G
Sbjct: 99  PKEYLPIDGIPEFNKLSAKLLYG-DAMVGKEKRMVTVQALSGTGALRIGIIFIRKYLPAG 157

Query: 178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237
             V IS P+W NH NI  ++ V  +EY YYDPKT GLDF GMI D++AAP GS  +LH C
Sbjct: 158 TVVYISRPSWTNHHNICKESGVQSAEYAYYDPKTKGLDFTGMINDMRAAPNGSVFVLHLC 217

Query: 238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297
           AHNPTG+DPT EQW  IADV++EKNHIPF D AYQG+ASG LD DA S RLF  RG E+ 
Sbjct: 218 AHNPTGVDPTHEQWNIIADVMREKNHIPFMDCAYQGYASGDLDYDAYSARLFLNRGFEMF 277

Query: 298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVG 357
            AQSYSKN GLY ER GA+ +V    D+  ++ SQLK   R MYS+PP HGAR+V  V+ 
Sbjct: 278 SAQSYSKNFGLYGERTGALTIVSHREDVIPKMLSQLKMDIRAMYSSPPTHGARLVTTVLS 337

Query: 358 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQS 417
           +P L   W  E++ M+GRIK+VRQK+ D+L A+   G +W  I+ QIGMF++TGL K Q 
Sbjct: 338 DPELTALWVKELKEMSGRIKDVRQKVLDALIARKVPG-NWEHIVNQIGMFTYTGLTKPQV 396

Query: 418 DNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDS 454
           D + NK+H+Y+   GR+SLAGL+    +Y ADAI+D+
Sbjct: 397 DILVNKYHIYLLGSGRVSLAGLNNKNIDYFADAILDA 433

Plays a key role in amino acid metabolism.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|Q55F21|AATM_DICDI Aspartate aminotransferase, mitochondrial OS=Dictyostelium discoideum GN=aatA PE=3 SV=1

 Score =  442 bits (1138), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/417 (50%), Positives = 286/417 (68%), Gaps = 2/417 (0%)

Query: 36  TAGFIKTKSFGRVSMVA-AVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYR 94
           +A  I    FG+ ++   + N + +  V   P DPILGVS A+  DT   K+NLGVGAYR
Sbjct: 4   SARLISNIKFGQKNIRQFSTNTNWWANVQKGPEDPILGVSIAYNKDTSPSKINLGVGAYR 63

Query: 95  TEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVAT 154
            E  +PYVLD VKKA+  + E   + EY PI G+AAFN++ A+L  G +   +KE+R+AT
Sbjct: 64  DENGKPYVLDCVKKADKKIYEANVDHEYAPIVGVAAFNQLAAQLALGEECKHIKEKRIAT 123

Query: 155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGL 214
           VQ +SGTG+LR+AA    R+  G    + +PTWGNH  IFNDA +P   Y YY+P T GL
Sbjct: 124 VQSISGTGALRIAADFFARFLKGKTAYVPNPTWGNHNVIFNDAGIPVKSYGYYNPATCGL 183

Query: 215 DFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGF 274
           +FE M  DI AAP GS ILLH CAHNPTG+DPT EQW+KI+++ +E+ H   FD AYQGF
Sbjct: 184 NFEAMTKDIAAAPEGSIILLHACAHNPTGVDPTAEQWKKISEICKERGHFVLFDFAYQGF 243

Query: 275 ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLK 334
           ASGS + DA++VR+F   G  + + QS++KN GLY ERIGA +++  +SD A  V+SQLK
Sbjct: 244 ASGSPEKDAAAVRMFVEDGHNIALCQSFAKNFGLYGERIGAFSILTETSDQALNVESQLK 303

Query: 335 RLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG 394
            L RPMYSNPPV+GAR+V  ++ +  L +EW++E++ MA RI N+R++L   L  K  S 
Sbjct: 304 ILIRPMYSNPPVYGARLVQAILKDKELTNEWRSEVKGMADRIINMREQLVKYLK-KHGST 362

Query: 395 KDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
           +DWS I  QIGMF FTGL   Q D + N++H+Y+T++GRIS+AG++    EYLA A+
Sbjct: 363 RDWSHITTQIGMFCFTGLTPEQVDRLANEYHIYLTRNGRISIAGINSTNVEYLAKAM 419

Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P12344|AATM_BOVIN Aspartate aminotransferase, mitochondrial OS=Bos taurus GN=GOT2 PE=1 SV=2

 Score =  435 bits (1118), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/391 (52%), Positives = 274/391 (70%), Gaps = 2/391 (0%)

Query: 62  VTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE 121
           V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL  V+KAE  +  +  +KE
Sbjct: 36  VEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKE 95

Query: 122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK-V 180
           YLPI GLA F K +AEL  G +N VLK  R  TVQ +SGTG+LR+ A+ ++R+F  ++ V
Sbjct: 96  YLPIAGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGALRIGASFLQRFFKFSRDV 155

Query: 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
            +  PTWGNH  IF DA +    YRYYDPKT G DF G I DI   P  S ILLH CAHN
Sbjct: 156 FLPKPTWGNHTPIFRDAGMQLQSYRYYDPKTCGFDFTGAIEDISKIPAQSVILLHACAHN 215

Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTG+DP PEQW+++A V+++ N   FFD+AYQGFASG  + DA +VR F  +G+ + + Q
Sbjct: 216 PTGVDPRPEQWKEMATVVKKNNLFAFFDMAYQGFASGDGNKDAWAVRHFIEQGINVCLCQ 275

Query: 301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPA 360
           SY+KN+GLY ER+GA  VVC  ++ A RV+SQLK L RPMYSNPP++GARI + ++ +P 
Sbjct: 276 SYAKNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPMYSNPPINGARIASTILTSPD 335

Query: 361 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNM 420
           L  +W  E++ MA RI ++R +L  +L  K+ S  +W  I+ QIGMF +TGL   Q + +
Sbjct: 336 LRKQWLHEVKGMADRIISMRTQLVSNLK-KEGSSHNWQHIIDQIGMFCYTGLKPEQVERL 394

Query: 421 TNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
           T ++ +YMTKDGRIS+AG++     YLA AI
Sbjct: 395 TKEFSIYMTKDGRISVAGVTSGNVAYLAHAI 425

Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol. Facilitates cellular uptake of long-chain free fatty acids.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	459
224143258	466	predicted protein [Populus trichocarpa]	1.0	0.984	0.899	0.0
224092554	466	predicted protein [Populus trichocarpa]	1.0	0.984	0.892	0.0
255548798	464	aspartate aminotransferase, putative [Ri	0.995	0.984	0.866	0.0
225430398	462	PREDICTED: aspartate aminotransferase, c	0.991	0.984	0.860	0.0
147766607	462	hypothetical protein VITISV_000267 [Viti	0.991	0.984	0.858	0.0
81074221	462	aspartate aminotransferase-like [Solanum	1.0	0.993	0.848	0.0
449441882	464	PREDICTED: aspartate aminotransferase, c	0.997	0.987	0.859	0.0
297798764	453	hypothetical protein ARALYDRAFT_491537 [	0.986	1.0	0.856	0.0
15236129	453	aspartate aminotransferase [Arabidopsis	0.986	1.0	0.847	0.0
531555	453	aspartate aminotransferase [Arabidopsis	0.986	1.0	0.847	0.0

>gi|224143258|ref|XP_002324896.1| predicted protein [Populus trichocarpa] gi|222866330|gb|EEF03461.1| predicted protein [Populus trichocarpa]

 Score =  874 bits (2257), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/466 (89%), Positives = 441/466 (94%), Gaps = 7/466 (1%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTA-------GFIKTKSFGRVSMVAA 53
           MASTM+S+ASATPSASLS+ E LKGK++LGS++ ST          IK KSFGR+SM  A
Sbjct: 1   MASTMISLASATPSASLSVQETLKGKMRLGSSSVSTLFNKEKGNPSIKKKSFGRISMTVA 60

Query: 54  VNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLM 113
           VNVSRFEG+ MAPPDPILGVSEAF+AD D KKLNLGVGAYRTEELQPYVLDVVKKAENLM
Sbjct: 61  VNVSRFEGIAMAPPDPILGVSEAFRADIDVKKLNLGVGAYRTEELQPYVLDVVKKAENLM 120

Query: 114 LERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER 173
           LERGENKEYL IEGLAAFNKVTAELLFGADN V+++QRVATVQGLSGTGSLRLAAALIER
Sbjct: 121 LERGENKEYLAIEGLAAFNKVTAELLFGADNQVIEQQRVATVQGLSGTGSLRLAAALIER 180

Query: 174 YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL 233
           YFPGA+VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMI+DIKAAP GSF+L
Sbjct: 181 YFPGAQVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMISDIKAAPEGSFVL 240

Query: 234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG 293
           LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD DASSVRLFA RG
Sbjct: 241 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDADASSVRLFAARG 300

Query: 294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVA 353
           MELLVAQSYSKNLGLYAERIGA+NVVCSS+D AARVKSQLKR+ARPMYSNPPVHGARIVA
Sbjct: 301 MELLVAQSYSKNLGLYAERIGAINVVCSSADAAARVKSQLKRIARPMYSNPPVHGARIVA 360

Query: 354 NVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN 413
           NVVG+PALF+EWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL+QIGMFSFTGLN
Sbjct: 361 NVVGDPALFNEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILKQIGMFSFTGLN 420

Query: 414 KAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 459
           KAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS
Sbjct: 421 KAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 466

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092554|ref|XP_002309659.1| predicted protein [Populus trichocarpa] gi|222855635|gb|EEE93182.1| predicted protein [Populus trichocarpa]

 Score =  870 bits (2248), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/466 (89%), Positives = 438/466 (93%), Gaps = 7/466 (1%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTA-------GFIKTKSFGRVSMVAA 53
           MASTMLS+AS TPSASLSM E LKGK +LGS + ST         FIK KSFGR+SM  A
Sbjct: 1   MASTMLSLASTTPSASLSMQEILKGKARLGSGSVSTLFNKEKGNPFIKAKSFGRISMTVA 60

Query: 54  VNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLM 113
           VNVSRFEG+ MAPPDPILGVSEAF+ADTD KKLNLGVGAYRTEELQPYVLDVVKKAENLM
Sbjct: 61  VNVSRFEGIAMAPPDPILGVSEAFRADTDVKKLNLGVGAYRTEELQPYVLDVVKKAENLM 120

Query: 114 LERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER 173
           LERGENKEYLPIEGLAAFNKVTAELLFGADN V+K+QRVATVQGLSGTGSLRLAAALIER
Sbjct: 121 LERGENKEYLPIEGLAAFNKVTAELLFGADNPVIKQQRVATVQGLSGTGSLRLAAALIER 180

Query: 174 YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL 233
           YFPGA+VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMI+DIKAAP GSF+L
Sbjct: 181 YFPGAQVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMISDIKAAPEGSFVL 240

Query: 234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG 293
           LHGCAHNPTGIDPTPEQWEKIADVIQEKNH+PFFDVAYQGFASGSLD DASSVRLFA RG
Sbjct: 241 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHVPFFDVAYQGFASGSLDADASSVRLFAARG 300

Query: 294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVA 353
           MELL+AQSYSKNLGLYAERIGA+NVVCSS+D AARVKSQLKR+ARPMYSNPPVHGARIVA
Sbjct: 301 MELLIAQSYSKNLGLYAERIGAINVVCSSADAAARVKSQLKRIARPMYSNPPVHGARIVA 360

Query: 354 NVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN 413
           NVVG+P LF+EWK EMEM+AGRIKNVRQKLFDSLSAKDKSGKDWSFIL+QIGMFSFTGLN
Sbjct: 361 NVVGDPILFNEWKEEMEMLAGRIKNVRQKLFDSLSAKDKSGKDWSFILKQIGMFSFTGLN 420

Query: 414 KAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 459
           K QS+NMTNKWHVYMT+DGRISLAGLSLAKCEYLADAIIDSYHNVS
Sbjct: 421 KTQSENMTNKWHVYMTRDGRISLAGLSLAKCEYLADAIIDSYHNVS 466

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548798|ref|XP_002515455.1| aspartate aminotransferase, putative [Ricinus communis] gi|223545399|gb|EEF46904.1| aspartate aminotransferase, putative [Ricinus communis]

 Score =  836 bits (2159), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/466 (86%), Positives = 429/466 (92%), Gaps = 9/466 (1%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGS-------TTNSTAGFIKTKSFGRVSMVAA 53
           MAS+M S+A A  S S SMH+ LK KV+LGS       T +    F+KTKS GR+SM AA
Sbjct: 1   MASSMFSLAGA--SLSPSMHDTLKEKVRLGSGSIGTWFTKDKVHSFMKTKSSGRISMTAA 58

Query: 54  VNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLM 113
           VN+SRFEG+TMA PDPILGVSEAF+AD D KKLNLGVGAYRTEEL PYVLDVVKKAENLM
Sbjct: 59  VNISRFEGITMALPDPILGVSEAFRADNDAKKLNLGVGAYRTEELHPYVLDVVKKAENLM 118

Query: 114 LERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER 173
           LERGENKEYLPIEGLAAFNKVTAELLFGADN V+ +QRVATVQGLSGTGSLRLAAALIER
Sbjct: 119 LERGENKEYLPIEGLAAFNKVTAELLFGADNPVINQQRVATVQGLSGTGSLRLAAALIER 178

Query: 174 YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL 233
           YF GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP+TVGLDFEGMI+DIKAAP GSF+L
Sbjct: 179 YFLGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPRTVGLDFEGMISDIKAAPEGSFVL 238

Query: 234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG 293
           LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD DA+SVRLFA RG
Sbjct: 239 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDADAASVRLFAARG 298

Query: 294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVA 353
           MELLVAQSYSKNLGLYAERIGA+NVVCSS+D AARVKSQLKR+ARPMYSNPPVHGARIVA
Sbjct: 299 MELLVAQSYSKNLGLYAERIGALNVVCSSADAAARVKSQLKRIARPMYSNPPVHGARIVA 358

Query: 354 NVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN 413
           NVVG+ +LF+EWK EMEMMAGRIK VRQKL+DSLSAKDKSGKDWSFIL+QIGMFS+TGLN
Sbjct: 359 NVVGDQSLFNEWKDEMEMMAGRIKGVRQKLYDSLSAKDKSGKDWSFILKQIGMFSYTGLN 418

Query: 414 KAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 459
           K QSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS
Sbjct: 419 KTQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 464

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430398|ref|XP_002285385.1| PREDICTED: aspartate aminotransferase, chloroplastic [Vitis vinifera] gi|296082090|emb|CBI21095.3| unnamed protein product [Vitis vinifera]

 Score =  832 bits (2148), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/466 (86%), Positives = 429/466 (92%), Gaps = 11/466 (2%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNST-------AGFIKTKSFGRVSMVAA 53
           MASTMLS+ SA    +L + E  KGK+ LGS+  S+         F+KTKSFGR++M  A
Sbjct: 1   MASTMLSLVSA----ALPLQENHKGKMNLGSSDCSSFLRKEKRNPFMKTKSFGRINMAIA 56

Query: 54  VNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLM 113
           VN SRFEGVTMAPPDPILGVSEAF+AD  E KLNLGVGAYRTEELQPYVL+VVKKAENLM
Sbjct: 57  VNTSRFEGVTMAPPDPILGVSEAFRADNSEMKLNLGVGAYRTEELQPYVLNVVKKAENLM 116

Query: 114 LERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER 173
           LERGENKEYLPIEGLAAFNKVTAELLFGA N V+++QRVATVQGLSGTGSLRLAAALIER
Sbjct: 117 LERGENKEYLPIEGLAAFNKVTAELLFGAGNPVIEQQRVATVQGLSGTGSLRLAAALIER 176

Query: 174 YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL 233
           YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF+GMI+DIKAAP GSF+L
Sbjct: 177 YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFDGMISDIKAAPEGSFVL 236

Query: 234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG 293
           LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD DASSVRLFA RG
Sbjct: 237 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDADASSVRLFAARG 296

Query: 294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVA 353
           MELLVAQSYSKNLGLYAERIGA+NVVCSS+D AARVKSQLKR+ARPMYSNPP+HGARIVA
Sbjct: 297 MELLVAQSYSKNLGLYAERIGAINVVCSSADAAARVKSQLKRIARPMYSNPPIHGARIVA 356

Query: 354 NVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN 413
           NVVG+PALF+EWK EME+MAGRIKNVRQKLFDSLSAKDK GKDWSFIL+QIGMFSFTGL+
Sbjct: 357 NVVGDPALFNEWKEEMELMAGRIKNVRQKLFDSLSAKDKCGKDWSFILKQIGMFSFTGLS 416

Query: 414 KAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 459
           K QS+NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDS+H VS
Sbjct: 417 KVQSENMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSFHCVS 462

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766607|emb|CAN76227.1| hypothetical protein VITISV_000267 [Vitis vinifera]

 Score =  829 bits (2142), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/466 (85%), Positives = 429/466 (92%), Gaps = 11/466 (2%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNST-------AGFIKTKSFGRVSMVAA 53
           MASTMLS+ SA    +L + E  KGK+ LGS+  S+         F+KTKSFGR++M  A
Sbjct: 1   MASTMLSLVSA----ALPLQENHKGKMNLGSSDCSSFLRKEKRNPFMKTKSFGRINMAIA 56

Query: 54  VNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLM 113
           VN SRFEGVTMAPPDPILGVSEAF+AD  E KLNLGVGAYRTEELQPYVL+VVKKAENLM
Sbjct: 57  VNTSRFEGVTMAPPDPILGVSEAFRADNSEMKLNLGVGAYRTEELQPYVLNVVKKAENLM 116

Query: 114 LERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER 173
           L+RGENKEYLPIEGLAAFNKVTAELLFGA N V+++QRVATVQGLSGTGSLRLAAALIER
Sbjct: 117 LKRGENKEYLPIEGLAAFNKVTAELLFGAGNPVIEQQRVATVQGLSGTGSLRLAAALIER 176

Query: 174 YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL 233
           YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF+GMI+DIKAAP GSF+L
Sbjct: 177 YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFDGMISDIKAAPEGSFVL 236

Query: 234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG 293
           LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD DASSVRLFA RG
Sbjct: 237 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDADASSVRLFAARG 296

Query: 294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVA 353
           MELLVAQSYSKNLGLYAERIGA+NVVCSS+D AARVKSQLKR+ARPMYSNPP+HGARIVA
Sbjct: 297 MELLVAQSYSKNLGLYAERIGAINVVCSSADAAARVKSQLKRIARPMYSNPPIHGARIVA 356

Query: 354 NVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN 413
           NVVG+PALF+EWK EME+MAGRIKNVRQKLFDSLSAKDK GKDWSFIL+QIGMFSFTGL+
Sbjct: 357 NVVGDPALFNEWKEEMELMAGRIKNVRQKLFDSLSAKDKCGKDWSFILKQIGMFSFTGLS 416

Query: 414 KAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 459
           K QS+NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDS+H VS
Sbjct: 417 KVQSENMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSFHCVS 462

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|81074221|gb|ABB55364.1| aspartate aminotransferase-like [Solanum tuberosum]

 Score =  827 bits (2136), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/462 (84%), Positives = 426/462 (92%), Gaps = 3/462 (0%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNST---AGFIKTKSFGRVSMVAAVNVS 57
           MASTM S+AS TPSAS+S+ + LK K+KLG+++        F+K KS G+ +M  AVNVS
Sbjct: 1   MASTMFSLASVTPSASISLQDNLKPKLKLGTSSQRAFPRKDFMKAKSNGQTTMAVAVNVS 60

Query: 58  RFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG 117
           RFEG+TMAPPDPILGVSEAFKADT+E KLNLGVGAYRTE+LQPYVL+VVKKAENL+LERG
Sbjct: 61  RFEGITMAPPDPILGVSEAFKADTNELKLNLGVGAYRTEDLQPYVLNVVKKAENLILERG 120

Query: 118 ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG 177
           ENKEYLPIEGLAAFNKVTAELLFG DN VL++QRVAT+QGLSGTGSLR+AAALIERYFPG
Sbjct: 121 ENKEYLPIEGLAAFNKVTAELLFGKDNPVLQQQRVATIQGLSGTGSLRIAAALIERYFPG 180

Query: 178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237
           +K+LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF GMI DIKAAP GSFILLHGC
Sbjct: 181 SKILISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFAGMIEDIKAAPEGSFILLHGC 240

Query: 238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297
           AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD DASSVR+FA RGMELL
Sbjct: 241 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDEDASSVRMFAARGMELL 300

Query: 298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVG 357
           VAQSYSKNLGLY ERIGA+NV+CSS+  A RVKSQLKRLARPMYSNPP+HGA+IVANVVG
Sbjct: 301 VAQSYSKNLGLYGERIGAINVLCSSAYAATRVKSQLKRLARPMYSNPPIHGAKIVANVVG 360

Query: 358 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQS 417
            P LF EWK EMEMMAGRIK+VRQKL+DSLSAKDKSGKDWSFIL+QIGMFSFTGLNKAQS
Sbjct: 361 TPELFSEWKEEMEMMAGRIKSVRQKLYDSLSAKDKSGKDWSFILKQIGMFSFTGLNKAQS 420

Query: 418 DNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 459
           +NM +KWHVYMTKDGRISLAGLS AKCEYLADAIIDSY+NVS
Sbjct: 421 ENMADKWHVYMTKDGRISLAGLSAAKCEYLADAIIDSYYNVS 462

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441882|ref|XP_004138711.1| PREDICTED: aspartate aminotransferase, chloroplastic-like [Cucumis sativus] gi|449499236|ref|XP_004160763.1| PREDICTED: aspartate aminotransferase, chloroplastic-like [Cucumis sativus]

 Score =  818 bits (2114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/463 (85%), Positives = 428/463 (92%), Gaps = 5/463 (1%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTT-----NSTAGFIKTKSFGRVSMVAAVN 55
           MAS++L +AS +PSAS S  +  K K+ LGS++     +    F K KSF R+SMVA+VN
Sbjct: 1   MASSVLPLASVSPSASRSSFDNNKKKLNLGSSSLTFDLDKNHPFAKAKSFSRISMVASVN 60

Query: 56  VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE 115
           VSRFEG+TMAPPDPILGVSEAFKADT   KLNLGVGAYRTEELQPYVLDVVKK E LMLE
Sbjct: 61  VSRFEGITMAPPDPILGVSEAFKADTHGNKLNLGVGAYRTEELQPYVLDVVKKVEALMLE 120

Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
           RG+NKEYLPIEGLAAFNK TAELLFGADN V+K+QRVAT+QGLSGTGSLRLAAALIERYF
Sbjct: 121 RGDNKEYLPIEGLAAFNKATAELLFGADNPVIKQQRVATIQGLSGTGSLRLAAALIERYF 180

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
           PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMI+DIKAAP GSF+LLH
Sbjct: 181 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMISDIKAAPEGSFVLLH 240

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
           GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD DASSVRLFA RG+E
Sbjct: 241 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDADASSVRLFAARGLE 300

Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV 355
           LLVAQSYSKNLGLYAERIGA+NVVC+S+D A RVKSQLKRLARPMYSNPPVHGARIVAN+
Sbjct: 301 LLVAQSYSKNLGLYAERIGAINVVCTSADAAIRVKSQLKRLARPMYSNPPVHGARIVANI 360

Query: 356 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKA 415
           VG+PALF+EWKAEMEMMAGRIKNVRQKL+DSL AKDKSGKDWSFIL+QIGMFSFTGL+K 
Sbjct: 361 VGDPALFNEWKAEMEMMAGRIKNVRQKLYDSLCAKDKSGKDWSFILKQIGMFSFTGLSKV 420

Query: 416 QSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNV 458
           QSDNMT+KWHVYMTKDGRISLAGLSLAKCEYLADAIIDS+HNV
Sbjct: 421 QSDNMTDKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSFHNV 463

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798764|ref|XP_002867266.1| hypothetical protein ARALYDRAFT_491537 [Arabidopsis lyrata subsp. lyrata] gi|297313102|gb|EFH43525.1| hypothetical protein ARALYDRAFT_491537 [Arabidopsis lyrata subsp. lyrata]

 Score =  811 bits (2096), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/459 (85%), Positives = 420/459 (91%), Gaps = 6/459 (1%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFE 60
           MAS+MLS+ S TP   L   E  K K+KLG  T+S+  F+K KSF RV+M  AV  SRFE
Sbjct: 1   MASSMLSLGS-TP---LLPREINKDKLKLG--TSSSNPFLKAKSFSRVTMTVAVKPSRFE 54

Query: 61  GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK 120
           G+TMAPPDPILGVSEAFKADT+E KLNLGVGAYRTEELQPYVL+VVKKAENLMLERG+NK
Sbjct: 55  GITMAPPDPILGVSEAFKADTNEMKLNLGVGAYRTEELQPYVLNVVKKAENLMLERGDNK 114

Query: 121 EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV 180
           EYLPIEGLAAFNK TAELLFGA + V+KEQRVAT+QGLSGTGSLRLAAALIERYFPGAKV
Sbjct: 115 EYLPIEGLAAFNKATAELLFGAGHPVIKEQRVATIQGLSGTGSLRLAAALIERYFPGAKV 174

Query: 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
           +ISSPTWGNHKNIFNDA+VPWSEYRYYDPKT+GLDFEGMIADIK AP GSFILLHGCAHN
Sbjct: 175 VISSPTWGNHKNIFNDAKVPWSEYRYYDPKTIGLDFEGMIADIKEAPEGSFILLHGCAHN 234

Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTGIDPTPEQW KIADVIQEKNHIPFFDVAYQGFASGSLD DA+SVRLFA RGME  VAQ
Sbjct: 235 PTGIDPTPEQWVKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFAERGMEFFVAQ 294

Query: 301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPA 360
           SYSKNLGLYAERIGA+NVVCSS+D A RVKSQLKR+ARPMYSNPPVHGARIVANVVG+  
Sbjct: 295 SYSKNLGLYAERIGAINVVCSSADAATRVKSQLKRIARPMYSNPPVHGARIVANVVGDAT 354

Query: 361 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNM 420
           +F EWKAEMEMMAGRIK VRQKL+DSL +KDKSGKDWSFIL+QIGMFSFTGLNKAQSDNM
Sbjct: 355 MFSEWKAEMEMMAGRIKTVRQKLYDSLVSKDKSGKDWSFILKQIGMFSFTGLNKAQSDNM 414

Query: 421 TNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 459
           T+KWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS
Sbjct: 415 TDKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 453

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236129|ref|NP_194927.1| aspartate aminotransferase [Arabidopsis thaliana] gi|30689228|ref|NP_849483.1| aspartate aminotransferase [Arabidopsis thaliana] gi|20532373|sp|P46248.2|AAT5_ARATH RecName: Full=Aspartate aminotransferase, chloroplastic; AltName: Full=Transaminase A; Flags: Precursor gi|2827636|emb|CAA16590.1| aspartate aminotransferase [Arabidopsis thaliana] gi|7270103|emb|CAB79917.1| aspartate aminotransferase [Arabidopsis thaliana] gi|15451160|gb|AAK96851.1| aspartate aminotransferase [Arabidopsis thaliana] gi|20148355|gb|AAM10068.1| aspartate aminotransferase [Arabidopsis thaliana] gi|222423613|dbj|BAH19775.1| AT4G31990 [Arabidopsis thaliana] gi|332660587|gb|AEE85987.1| aspartate aminotransferase [Arabidopsis thaliana] gi|332660588|gb|AEE85988.1| aspartate aminotransferase [Arabidopsis thaliana]

 Score =  805 bits (2079), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/459 (84%), Positives = 417/459 (90%), Gaps = 6/459 (1%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFE 60
           MAS MLS+ S     SL   E  K K+KLG  T+++  F+K KSF RV+M  AV  SRFE
Sbjct: 1   MASLMLSLGST----SLLPREINKDKLKLG--TSASNPFLKAKSFSRVTMTVAVKPSRFE 54

Query: 61  GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK 120
           G+TMAPPDPILGVSEAFKADT+  KLNLGVGAYRTEELQPYVL+VVKKAENLMLERG+NK
Sbjct: 55  GITMAPPDPILGVSEAFKADTNGMKLNLGVGAYRTEELQPYVLNVVKKAENLMLERGDNK 114

Query: 121 EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV 180
           EYLPIEGLAAFNK TAELLFGA + V+KEQRVAT+QGLSGTGSLRLAAALIERYFPGAKV
Sbjct: 115 EYLPIEGLAAFNKATAELLFGAGHPVIKEQRVATIQGLSGTGSLRLAAALIERYFPGAKV 174

Query: 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
           +ISSPTWGNHKNIFNDA+VPWSEYRYYDPKT+GLDFEGMIADIK AP GSFILLHGCAHN
Sbjct: 175 VISSPTWGNHKNIFNDAKVPWSEYRYYDPKTIGLDFEGMIADIKEAPEGSFILLHGCAHN 234

Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTGIDPTPEQW KIADVIQEKNHIPFFDVAYQGFASGSLD DA+SVRLFA RGME  VAQ
Sbjct: 235 PTGIDPTPEQWVKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFAERGMEFFVAQ 294

Query: 301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPA 360
           SYSKNLGLYAERIGA+NVVCSS+D A RVKSQLKR+ARPMYSNPPVHGARIVANVVG+  
Sbjct: 295 SYSKNLGLYAERIGAINVVCSSADAATRVKSQLKRIARPMYSNPPVHGARIVANVVGDVT 354

Query: 361 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNM 420
           +F EWKAEMEMMAGRIK VRQ+L+DSL +KDKSGKDWSFIL+QIGMFSFTGLNKAQSDNM
Sbjct: 355 MFSEWKAEMEMMAGRIKTVRQELYDSLVSKDKSGKDWSFILKQIGMFSFTGLNKAQSDNM 414

Query: 421 TNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 459
           T+KWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS
Sbjct: 415 TDKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 453

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|531555|emb|CAA56932.1| aspartate aminotransferase [Arabidopsis thaliana] gi|1017411|emb|CAA62972.1| aspartate aminotransferase [Arabidopsis thaliana]

 Score =  804 bits (2077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/459 (84%), Positives = 416/459 (90%), Gaps = 6/459 (1%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFE 60
           MAS MLS+ S     SL   E  K  VKLG  T+++  F+K KSF RV+M  AV  SRFE
Sbjct: 1   MASLMLSLGST----SLLPREINKDNVKLG--TSASNPFLKAKSFSRVTMTVAVKPSRFE 54

Query: 61  GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK 120
           G+TMAPPDPILGVSEAFKADT+  KLNLGVGAYRTEELQPYVL+VVKKAENLMLERG+NK
Sbjct: 55  GITMAPPDPILGVSEAFKADTNGMKLNLGVGAYRTEELQPYVLNVVKKAENLMLERGDNK 114

Query: 121 EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV 180
           EYLPIEGLAAFNK TAELLFGA + V+KEQRVAT+QGLSGTGSLRLAAALIERYFPGAKV
Sbjct: 115 EYLPIEGLAAFNKATAELLFGAGHPVIKEQRVATIQGLSGTGSLRLAAALIERYFPGAKV 174

Query: 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
           +ISSPTWGNHKNIFNDA+VPWSEYRYYDPKT+GLDFEGMIADIK AP GSFILLHGCAHN
Sbjct: 175 VISSPTWGNHKNIFNDAKVPWSEYRYYDPKTIGLDFEGMIADIKEAPEGSFILLHGCAHN 234

Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTGIDPTPEQW KIADVIQEKNHIPFFDVAYQGFASGSLD DA+SVRLFA RGME  VAQ
Sbjct: 235 PTGIDPTPEQWVKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFAERGMEFFVAQ 294

Query: 301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPA 360
           SYSKNLGLYAERIGA+NVVCSS+D A RVKSQLKR+ARPMYSNPPVHGARIVANVVG+  
Sbjct: 295 SYSKNLGLYAERIGAINVVCSSADAATRVKSQLKRIARPMYSNPPVHGARIVANVVGDVT 354

Query: 361 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNM 420
           +F EWKAEMEMMAGRIK VRQ+L+DSL +KDKSGKDWSFIL+QIGMFSFTGLNKAQSDNM
Sbjct: 355 MFSEWKAEMEMMAGRIKTVRQELYDSLVSKDKSGKDWSFILKQIGMFSFTGLNKAQSDNM 414

Query: 421 TNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 459
           T+KWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS
Sbjct: 415 TDKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 453

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	459
TAIR|locus:2116682	462	ASP5 "aspartate aminotransfera	0.982	0.976	0.846	2e-205
UNIPROTKB|P26563	454	P26563 "Aspartate aminotransfe	0.986	0.997	0.831	5.6e-203
UNIPROTKB|P37833	407	LOC_Os01g55540 "Aspartate amin	0.858	0.968	0.560	6.7e-120
UNIPROTKB|P28734	405	P28734 "Aspartate aminotransfe	0.858	0.972	0.570	2.9e-119
TAIR|locus:2180826	405	ASP2 "aspartate aminotransfera	0.858	0.972	0.545	8.8e-118
TAIR|locus:2144226	449	ASP3 "aspartate aminotransfera	0.858	0.877	0.545	2.4e-115
DICTYBASE|DDB_G0282493	438	aatB "aspartate transaminase"	0.854	0.894	0.556	1.9e-113
DICTYBASE|DDB_G0268664	426	aatA "aspartate transaminase"	0.904	0.974	0.505	5.3e-111
UNIPROTKB|P12344	430	GOT2 "Aspartate aminotransfera	0.882	0.941	0.515	1.5e-108
MGI|MGI:95792	430	Got2 "glutamate oxaloacetate t	0.882	0.941	0.520	1.5e-108

TAIR|locus:2116682 ASP5 "aspartate aminotransferase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1987 (704.5 bits), Expect = 2.0e-205, P = 2.0e-205
 Identities = 387/457 (84%), Positives = 415/457 (90%)

Query:     1 MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFE 60
             MAS MLS+ S     SL   E  K K+KLG  T+++  F+K KSF RV+M  AV  SRFE
Sbjct:     1 MASLMLSLGST----SLLPREINKDKLKLG--TSASNPFLKAKSFSRVTMTVAVKPSRFE 54

Query:    61 GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK 120
             G+TMAPPDPILGVSEAFKADT+  KLNLGVGAYRTEELQPYVL+VVKKAENLMLERG+NK
Sbjct:    55 GITMAPPDPILGVSEAFKADTNGMKLNLGVGAYRTEELQPYVLNVVKKAENLMLERGDNK 114

Query:   121 EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV 180
             EYLPIEGLAAFNK TAELLFGA + V+KEQRVAT+QGLSGTGSLRLAAALIERYFPGAKV
Sbjct:   115 EYLPIEGLAAFNKATAELLFGAGHPVIKEQRVATIQGLSGTGSLRLAAALIERYFPGAKV 174

Query:   181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
             +ISSPTWGNHKNIFNDA+VPWSEYRYYDPKT+GLDFEGMIADIK AP GSFILLHGCAHN
Sbjct:   175 VISSPTWGNHKNIFNDAKVPWSEYRYYDPKTIGLDFEGMIADIKEAPEGSFILLHGCAHN 234

Query:   241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
             PTGIDPTPEQW KIADVIQEKNHIPFFDVAYQGFASGSLD DA+SVRLFA RGME  VAQ
Sbjct:   235 PTGIDPTPEQWVKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFAERGMEFFVAQ 294

Query:   301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPA 360
             SYSKNLGLYAERIGA+NVVCSS+D A RVKSQLKR+ARPMYSNPPVHGARIVANVVG+  
Sbjct:   295 SYSKNLGLYAERIGAINVVCSSADAATRVKSQLKRIARPMYSNPPVHGARIVANVVGDVT 354

Query:   361 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNM 420
             +F EWKAEMEMMAGRIK VRQ+L+DSL +KDKSGKDWSFIL+QIGMFSFTGLNKAQSDNM
Sbjct:   355 MFSEWKAEMEMMAGRIKTVRQELYDSLVSKDKSGKDWSFILKQIGMFSFTGLNKAQSDNM 414

Query:   421 TNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHN 457
             T+KWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHN
Sbjct:   415 TDKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHN 451

GO:0003824 "catalytic activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0033853 "aspartate-prephenate aminotransferase activity" evidence=IDA

GO:0033854 "glutamate-prephenate aminotransferase activity" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|P26563 P26563 "Aspartate aminotransferase P2, mitochondrial" [Lupinus angustifolius (taxid:3871)]

 Score = 1964 (696.4 bits), Expect = 5.6e-203, P = 5.6e-203
 Identities = 381/458 (83%), Positives = 413/458 (90%)

Query:     3 STMLSIASATPSASLSMHEKLK-GKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFEG 61
             S++LSI    PS SL  ++KLK G   L  +   +  F   KS  R+SMVAAVNVSRFEG
Sbjct:     1 SSLLSI----PSLSLQYNDKLKVGGNSLRFSKEQSNTFSNAKSSCRISMVAAVNVSRFEG 56

Query:    62 VTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE 121
             + MAPPDPILGVSEAF+ADT + KLNLGVGAYRTEELQPYVL VV KAENLMLERG+NKE
Sbjct:    57 IPMAPPDPILGVSEAFRADTSDAKLNLGVGAYRTEELQPYVLKVVNKAENLMLERGQNKE 116

Query:   122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL 181
             YL IEGLAAFNK TAELL GADN  +K+QRVATVQGLSGTGSLRL AALIERYFPGAKVL
Sbjct:   117 YLAIEGLAAFNKATAELLLGADNPAIKQQRVATVQGLSGTGSLRLGAALIERYFPGAKVL 176

Query:   182 ISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241
             IS+PTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMI DIKAAP G+F+LLHGCAHNP
Sbjct:   177 ISAPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIEDIKAAPEGTFVLLHGCAHNP 236

Query:   242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS 301
             TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD DA+SVRLF  RG+E+LVAQS
Sbjct:   237 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFVARGLEVLVAQS 296

Query:   302 YSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPAL 361
             YSKNLGLYAERIGA+NV+ SS + AARVKSQLKR+ARPMYSNPPVHGARIVA++VGNPAL
Sbjct:   297 YSKNLGLYAERIGAINVISSSPESAARVKSQLKRIARPMYSNPPVHGARIVADIVGNPAL 356

Query:   362 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMT 421
             FDEWK EMEMMAGRIKNVRQ+L+DS+S+KDKSGKDWSFIL+QIGMFS+TGLNK QSDNMT
Sbjct:   357 FDEWKVEMEMMAGRIKNVRQQLYDSISSKDKSGKDWSFILKQIGMFSYTGLNKNQSDNMT 416

Query:   422 NKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 459
             NKWHVYMTKDGRISLAGLSLAKCEYLADAIIDS+H VS
Sbjct:   417 NKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSFHYVS 454

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0006531 "aspartate metabolic process" evidence=ISS

GO:0006536 "glutamate metabolic process" evidence=ISS

UNIPROTKB|P37833 LOC_Os01g55540 "Aspartate aminotransferase, cytoplasmic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1180 (420.4 bits), Expect = 6.7e-120, P = 6.7e-120
 Identities = 222/396 (56%), Positives = 295/396 (74%)

Query:    57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
             S F G+  AP DPILGV+ A+  D    K+NLGVGAYRTEE +P VL+VV++AE +++  
Sbjct:     5 SVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQMLINN 64

Query:   117 GEN-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
                 KEYLPI GLA FNK++A+L+FGAD+  ++E RVATVQ LSGTGSLR+    + R++
Sbjct:    65 PSRVKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHY 124

Query:   176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
                 + I  PTWGNH  +F  A +    YRYYDP T GLDF+G++ D+ +AP G+ +LLH
Sbjct:   125 HERTIYIPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDLGSAPSGAIVLLH 184

Query:   236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
              CAHNPTG+DPT +QWE+I  +++ K  +PFFD AYQGFASGSLD DA SVR+F   G E
Sbjct:   185 ACAHNPTGVDPTLDQWEQIRQLMRSKALLPFFDSAYQGFASGSLDQDAQSVRMFVADGGE 244

Query:   296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV 355
             LL+AQSY+KN+GLY ER+GA+++VC S+D+A RV+SQLK + RPMYSNPP+HGA IVA +
Sbjct:   245 LLMAQSYAKNMGLYGERVGALSIVCGSADVAVRVESQLKLVIRPMYSNPPIHGASIVATI 304

Query:   356 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKA 415
             + + A+F+EW  E++ MA RI ++RQ+LFD+L  ++  G DWS I++QIGMF+FTGLN  
Sbjct:   305 LKDSAMFNEWTVELKGMADRIISMRQQLFDALKTRETPG-DWSHIIKQIGMFTFTGLNSD 363

Query:   416 QSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
             Q   M  ++H+YMT DGRIS+AGLS     +LADAI
Sbjct:   364 QVAFMRQEYHIYMTSDGRISMAGLSGRTIPHLADAI 399

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0006522 "alanine metabolic process" evidence=ISS

GO:0006531 "aspartate metabolic process" evidence=ISS

GO:0006536 "glutamate metabolic process" evidence=ISS

GO:0006807 "nitrogen compound metabolic process" evidence=ISS

UNIPROTKB|P28734 P28734 "Aspartate aminotransferase, cytoplasmic" [Daucus carota (taxid:4039)]

 Score = 1174 (418.3 bits), Expect = 2.9e-119, P = 2.9e-119
 Identities = 226/396 (57%), Positives = 298/396 (75%)

Query:    57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-E 115
             S F  V  AP DPILGV+ A+  D    KLNLGVGAYRTEE +P VL+VVKKAE +++ +
Sbjct:     3 SVFANVVRAPEDPILGVTVAYHKDQSPNKLNLGVGAYRTEEGKPLVLNVVKKAEQMLVND 62

Query:   116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
             +   KEYLPI GLA FNK++A+L+FGAD+  ++E RVATVQ LSGTGSLR+    + R++
Sbjct:    63 QSRVKEYLPIVGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHY 122

Query:   176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
                 V I  PTWGNH  IF  A +    YRYY+P+T GLDFEGM+ D+ +AP G+ +LLH
Sbjct:   123 HEHTVYIPQPTWGNHPKIFTLAGLSVKTYRYYNPETRGLDFEGMLEDLGSAPLGAIVLLH 182

Query:   236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
              CAHNPTG+DPT EQWE+I  +++ K+ +PFFD AYQGFASGSLD DA SVR+F   G E
Sbjct:   183 ACAHNPTGVDPTIEQWEQIRQLMRSKSLLPFFDSAYQGFASGSLDADAQSVRIFVADGGE 242

Query:   296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV 355
              L AQSY+KN+GLY ER+GA+++VC ++D+A++V+SQLK + RPMYS+PP+HGA IVA +
Sbjct:   243 CLAAQSYAKNMGLYGERVGALSIVCKTADVASKVESQLKLVIRPMYSSPPLHGASIVAAI 302

Query:   356 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKA 415
             + +  L++EW  E++ MA RI ++RQ+LF++L AK   G DWS I++QIGMF+FTGLN  
Sbjct:   303 LKDGDLYNEWTLELKAMADRIISMRQELFNALQAKGTPG-DWSHIVKQIGMFTFTGLNSE 361

Query:   416 QSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
             Q   MTN++H+Y+T DGRIS+AGLS     +LADAI
Sbjct:   362 QVTFMTNEYHIYLTSDGRISMAGLSSRTVPHLADAI 397

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0006531 "aspartate metabolic process" evidence=ISS

GO:0006536 "glutamate metabolic process" evidence=ISS

TAIR|locus:2180826 ASP2 "aspartate aminotransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1160 (413.4 bits), Expect = 8.8e-118, P = 8.8e-118
 Identities = 216/396 (54%), Positives = 296/396 (74%)

Query:    57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAEN-LMLE 115
             S F  V  AP DPILGV+ A+  D    K+NLGVGAYRTEE +P VLDVV+KAE  L+ +
Sbjct:     3 SVFSNVARAPEDPILGVTVAYNNDPSPVKINLGVGAYRTEEGKPLVLDVVRKAEQQLVND 62

Query:   116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
                 KEY+PI G++ FNK++A+L+ GAD+  + E RV TVQ LSGTGSLR+ A  ++ ++
Sbjct:    63 PSRVKEYIPIVGISDFNKLSAKLILGADSPAITESRVTTVQCLSGTGSLRVGAEFLKTHY 122

Query:   176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
               + + I  PTWGNH  +FN A +    +RYYDP T GLDF+G++ D+ AAP G+ +LLH
Sbjct:   123 HQSVIYIPKPTWGNHPKVFNLAGLSVEYFRYYDPATRGLDFKGLLEDLGAAPSGAIVLLH 182

Query:   236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
              CAHNPTG+DPT EQWE+I  +++ K+ +PFFD AYQGFASGSLD DA SVR F   G E
Sbjct:   183 ACAHNPTGVDPTSEQWEQIRQLMRSKSLLPFFDSAYQGFASGSLDTDAQSVRTFVADGGE 242

Query:   296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV 355
              L+AQSY+KN+GLY ER+GA+++VC S+D+A++V+SQ+K + RPMYS+PP+HGA IVA +
Sbjct:   243 CLIAQSYAKNMGLYGERVGALSIVCKSADVASKVESQVKLVVRPMYSSPPIHGASIVATI 302

Query:   356 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKA 415
             + +  +++ W  E++ MA RIK++RQ+LF+++ A+   G DWS I++QIGMF+FTGLNK 
Sbjct:   303 LKSSDMYNNWTIELKEMADRIKSMRQQLFEAIQARGTPG-DWSHIIKQIGMFTFTGLNKE 361

Query:   416 QSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
             Q + MT ++H+YMT DGRIS+AGLS     +LADA+
Sbjct:   362 QVEFMTKEFHIYMTSDGRISMAGLSSKTVPHLADAM 397

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

TAIR|locus:2144226 ASP3 "aspartate aminotransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
 Identities = 216/396 (54%), Positives = 290/396 (73%)

Query:    57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-E 115
             S F  +  AP DPILGV+ A+  D    KLNLGVGAYRTEE +P VL+VV+KAE  ++ +
Sbjct:    47 SVFSHLVQAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQQLIND 106

Query:   116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
             R   KEYLPI GL  FNK++A+L+ GAD+  ++E R+ TV+ LSGTGSLR+    + +++
Sbjct:   107 RTRIKEYLPIVGLVEFNKLSAKLILGADSPAIRENRITTVECLSGTGSLRVGGEFLAKHY 166

Query:   176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
                 + I+ PTWGNH  IF  A +    YRYYDP T GL+F+G++ D+ AA  GS +LLH
Sbjct:   167 HQKTIYITQPTWGNHPKIFTLAGLTVKTYRYYDPATRGLNFQGLLEDLGAAAPGSIVLLH 226

Query:   236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
              CAHNPTG+DPT +QWE+I  +++ K  +PFFD AYQGFASGSLD DA  +R+F   G E
Sbjct:   227 ACAHNPTGVDPTIQQWEQIRKLMRSKGLMPFFDSAYQGFASGSLDTDAKPIRMFVADGGE 286

Query:   296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV 355
              LVAQSY+KN+GLY ER+GA+++VC S+D+A RV+SQLK + RPMYS+PP+HGA IVA +
Sbjct:   287 CLVAQSYAKNMGLYGERVGALSIVCKSADVAGRVESQLKLVIRPMYSSPPIHGASIVAVI 346

Query:   356 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKA 415
             + +  LF+EW  E++ MA RI ++R++LF++L  +   G DWS I++QIGMF+FTGLN A
Sbjct:   347 LRDKNLFNEWTLELKAMADRIISMRKQLFEALRTRGTPG-DWSHIIKQIGMFTFTGLNPA 405

Query:   416 QSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
             Q   MT ++H+YMT DGRIS+AGLS     +LADAI
Sbjct:   406 QVSFMTKEYHIYMTSDGRISMAGLSSKTVPHLADAI 441

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0010150 "leaf senescence" evidence=IEP

GO:0005777 "peroxisome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009735 "response to cytokinin stimulus" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=ISS

GO:0009536 "plastid" evidence=IDA

DICTYBASE|DDB_G0282493 aatB "aspartate transaminase" [Dictyostelium discoideum (taxid:44689)]

 Score = 1119 (399.0 bits), Expect = 1.9e-113, P = 1.9e-113
 Identities = 221/397 (55%), Positives = 280/397 (70%)

Query:    59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
             F  V + P DPILGVS AFKADTD +K++  VGAYR E  +PYVL  V +AE  +L  G 
Sbjct:    41 FANVPLGPVDPILGVSTAFKADTDPRKVDTSVGAYRDENGKPYVLKCVFEAEKRLL--GA 98

Query:   119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP-G 177
              KEYLPI+G+  FNK++A+LL+G D  V KE+R+ TVQ LSGTG+LR+    I +Y P G
Sbjct:    99 PKEYLPIDGIPEFNKLSAKLLYG-DAMVGKEKRMVTVQALSGTGALRIGIIFIRKYLPAG 157

Query:   178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237
               V IS P+W NH NI  ++ V  +EY YYDPKT GLDF GMI D++AAP GS  +LH C
Sbjct:   158 TVVYISRPSWTNHHNICKESGVQSAEYAYYDPKTKGLDFTGMINDMRAAPNGSVFVLHLC 217

Query:   238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297
             AHNPTG+DPT EQW  IADV++EKNHIPF D AYQG+ASG LD DA S RLF  RG E+ 
Sbjct:   218 AHNPTGVDPTHEQWNIIADVMREKNHIPFMDCAYQGYASGDLDYDAYSARLFLNRGFEMF 277

Query:   298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVG 357
              AQSYSKN GLY ER GA+ +V    D+  ++ SQLK   R MYS+PP HGAR+V  V+ 
Sbjct:   278 SAQSYSKNFGLYGERTGALTIVSHREDVIPKMLSQLKMDIRAMYSSPPTHGARLVTTVLS 337

Query:   358 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQS 417
             +P L   W  E++ M+GRIK+VRQK+ D+L A+   G +W  I+ QIGMF++TGL K Q 
Sbjct:   338 DPELTALWVKELKEMSGRIKDVRQKVLDALIARKVPG-NWEHIVNQIGMFTYTGLTKPQV 396

Query:   418 DNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDS 454
             D + NK+H+Y+   GR+SLAGL+    +Y ADAI+D+
Sbjct:   397 DILVNKYHIYLLGSGRVSLAGLNNKNIDYFADAILDA 433

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0080130 "L-phenylalanine:2-oxoglutarate aminotransferase activity" evidence=IEA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0019266 "asparagine biosynthetic process from oxaloacetate" evidence=ISS

GO:0006536 "glutamate metabolic process" evidence=ISS

GO:0006533 "aspartate catabolic process" evidence=ISS

GO:0006532 "aspartate biosynthetic process" evidence=ISS

GO:0006531 "aspartate metabolic process" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0268664 aatA "aspartate transaminase" [Dictyostelium discoideum (taxid:44689)]

 Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
 Identities = 211/417 (50%), Positives = 286/417 (68%)

Query:    36 TAGFIKTKSFGRVSMVA-AVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYR 94
             +A  I    FG+ ++   + N + +  V   P DPILGVS A+  DT   K+NLGVGAYR
Sbjct:     4 SARLISNIKFGQKNIRQFSTNTNWWANVQKGPEDPILGVSIAYNKDTSPSKINLGVGAYR 63

Query:    95 TEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVAT 154
              E  +PYVLD VKKA+  + E   + EY PI G+AAFN++ A+L  G +   +KE+R+AT
Sbjct:    64 DENGKPYVLDCVKKADKKIYEANVDHEYAPIVGVAAFNQLAAQLALGEECKHIKEKRIAT 123

Query:   155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGL 214
             VQ +SGTG+LR+AA    R+  G    + +PTWGNH  IFNDA +P   Y YY+P T GL
Sbjct:   124 VQSISGTGALRIAADFFARFLKGKTAYVPNPTWGNHNVIFNDAGIPVKSYGYYNPATCGL 183

Query:   215 DFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGF 274
             +FE M  DI AAP GS ILLH CAHNPTG+DPT EQW+KI+++ +E+ H   FD AYQGF
Sbjct:   184 NFEAMTKDIAAAPEGSIILLHACAHNPTGVDPTAEQWKKISEICKERGHFVLFDFAYQGF 243

Query:   275 ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLK 334
             ASGS + DA++VR+F   G  + + QS++KN GLY ERIGA +++  +SD A  V+SQLK
Sbjct:   244 ASGSPEKDAAAVRMFVEDGHNIALCQSFAKNFGLYGERIGAFSILTETSDQALNVESQLK 303

Query:   335 RLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG 394
              L RPMYSNPPV+GAR+V  ++ +  L +EW++E++ MA RI N+R++L   L  K  S 
Sbjct:   304 ILIRPMYSNPPVYGARLVQAILKDKELTNEWRSEVKGMADRIINMREQLVKYLK-KHGST 362

Query:   395 KDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
             +DWS I  QIGMF FTGL   Q D + N++H+Y+T++GRIS+AG++    EYLA A+
Sbjct:   363 RDWSHITTQIGMFCFTGLTPEQVDRLANEYHIYLTRNGRISIAGINSTNVEYLAKAM 419

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0080130 "L-phenylalanine:2-oxoglutarate aminotransferase activity" evidence=IEA

GO:0016212 "kynurenine-oxoglutarate transaminase activity" evidence=IEA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=IEA;ISS

GO:0019266 "asparagine biosynthetic process from oxaloacetate" evidence=ISS

GO:0006536 "glutamate metabolic process" evidence=ISS

GO:0006533 "aspartate catabolic process" evidence=ISS

GO:0006532 "aspartate biosynthetic process" evidence=ISS

GO:0006531 "aspartate metabolic process" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0005739 "mitochondrion" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|P12344 GOT2 "Aspartate aminotransferase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 1073 (382.8 bits), Expect = 1.5e-108, P = 1.5e-108
 Identities = 210/407 (51%), Positives = 280/407 (68%)

Query:    46 GRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDV 105
             G  +  +A   S +  V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL  
Sbjct:    20 GLAAAASARASSWWAHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPS 79

Query:   106 VKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR 165
             V+KAE  +  +  +KEYLPI GLA F K +AEL  G +N VLK  R  TVQ +SGTG+LR
Sbjct:    80 VRKAEAQIAAKNLDKEYLPIAGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGALR 139

Query:   166 LAAALIERYFPGAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIK 224
             + A+ ++R+F  ++ V +  PTWGNH  IF DA +    YRYYDPKT G DF G I DI 
Sbjct:   140 IGASFLQRFFKFSRDVFLPKPTWGNHTPIFRDAGMQLQSYRYYDPKTCGFDFTGAIEDIS 199

Query:   225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDAS 284
               P  S ILLH CAHNPTG+DP PEQW+++A V+++ N   FFD+AYQGFASG  + DA 
Sbjct:   200 KIPAQSVILLHACAHNPTGVDPRPEQWKEMATVVKKNNLFAFFDMAYQGFASGDGNKDAW 259

Query:   285 SVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNP 344
             +VR F  +G+ + + QSY+KN+GLY ER+GA  VVC  ++ A RV+SQLK L RPMYSNP
Sbjct:   260 AVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPMYSNP 319

Query:   345 PVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQI 404
             P++GARI + ++ +P L  +W  E++ MA RI ++R +L  +L  K+ S  +W  I+ QI
Sbjct:   320 PINGARIASTILTSPDLRKQWLHEVKGMADRIISMRTQLVSNLK-KEGSSHNWQHIIDQI 378

Query:   405 GMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
             GMF +TGL   Q + +T ++ +YMTKDGRIS+AG++     YLA AI
Sbjct:   379 GMFCYTGLKPEQVERLTKEFSIYMTKDGRISVAGVTSGNVAYLAHAI 425

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0009986 "cell surface" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0006536 "glutamate metabolic process" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0006531 "aspartate metabolic process" evidence=ISS

GO:0005886 "plasma membrane" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0045471 "response to ethanol" evidence=IEA

GO:0019551 "glutamate catabolic process to 2-oxoglutarate" evidence=IEA

GO:0019550 "glutamate catabolic process to aspartate" evidence=IEA

GO:0015908 "fatty acid transport" evidence=IEA

GO:0006533 "aspartate catabolic process" evidence=IEA

GO:0006532 "aspartate biosynthetic process" evidence=IEA

GO:0006107 "oxaloacetate metabolic process" evidence=IEA

GO:0080130 "L-phenylalanine:2-oxoglutarate aminotransferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

MGI|MGI:95792 Got2 "glutamate oxaloacetate transaminase 2, mitochondrial" [Mus musculus (taxid:10090)]

 Score = 1073 (382.8 bits), Expect = 1.5e-108, P = 1.5e-108
 Identities = 212/407 (52%), Positives = 280/407 (68%)

Query:    46 GRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDV 105
             G  +  +A   S +  V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL  
Sbjct:    20 GLAAAASARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPS 79

Query:   106 VKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR 165
             V+KAE  +  +  +KEYLPI GLA F K +AEL  G +N VLK  R  TVQ +SGTG+LR
Sbjct:    80 VRKAEAQIAAKNLDKEYLPIGGLAEFCKASAELALGENNEVLKSGRFVTVQTISGTGALR 139

Query:   166 LAAALIERYFPGAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIK 224
             + A+ ++R+F  ++ V +  P+WGNH  IF DA +    YRYYDPKT G DF G + DI 
Sbjct:   140 VGASFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDIS 199

Query:   225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDAS 284
               P  S +LLH CAHNPTG+DP PEQW++IA V+++KN   FFD+AYQGFASG  D DA 
Sbjct:   200 KIPEQSVLLLHACAHNPTGVDPRPEQWKEIASVVKKKNLFAFFDMAYQGFASGDGDKDAW 259

Query:   285 SVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNP 344
             +VR F  +G+ + + QSY+KN+GLY ER+GA  VVC  ++ A RV+SQLK L RP+YSNP
Sbjct:   260 AVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPLYSNP 319

Query:   345 PVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQI 404
             P++GARI A ++ +P L  +W  E++ MA RI ++R +L  +L  K+ S  +W  I  QI
Sbjct:   320 PLNGARIAATILTSPDLRKQWLQEVKGMADRIISMRTQLVSNLK-KEGSSHNWQHITDQI 378

Query:   405 GMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
             GMF FTGL   Q + +T ++ VYMTKDGRIS+AG++     YLA AI
Sbjct:   379 GMFCFTGLKPEQVERLTKEFSVYMTKDGRISVAGVTSGNVGYLAHAI 425

GO:0003824 "catalytic activity" evidence=IEA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=ISO;IDA

GO:0005543 "phospholipid binding" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006107 "oxaloacetate metabolic process" evidence=IDA

GO:0006520 "cellular amino acid metabolic process" evidence=ISO

GO:0006531 "aspartate metabolic process" evidence=ISO

GO:0006532 "aspartate biosynthetic process" evidence=IDA

GO:0006533 "aspartate catabolic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016212 "kynurenine-oxoglutarate transaminase activity" evidence=IEA

GO:0016597 "amino acid binding" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0019550 "glutamate catabolic process to aspartate" evidence=IDA

GO:0019551 "glutamate catabolic process to 2-oxoglutarate" evidence=IDA

GO:0019899 "enzyme binding" evidence=ISO

GO:0030170 "pyridoxal phosphate binding" evidence=ISO

GO:0031406 "carboxylic acid binding" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043204 "perikaryon" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0043648 "dicarboxylic acid metabolic process" evidence=ISO

GO:0045471 "response to ethanol" evidence=ISO

GO:0080130 "L-phenylalanine:2-oxoglutarate aminotransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q02636	ATTY_RHIME	2, ., 6, ., 1, ., 5	0.3589	0.8322	0.9820	yes	no
P12344	AATM_BOVIN	2, ., 6, ., 1, ., 1	0.5294	0.8474	0.9046	yes	no
P05202	AATM_MOUSE	2, ., 6, ., 1, ., 1	0.5345	0.8474	0.9046	yes	no
P95468	TYRB_PARDE	2, ., 6, ., 1, ., 5, 7	0.3943	0.8300	0.9670	yes	no
O94320	AATM_SCHPO	2, ., 6, ., 1, ., 1	0.4641	0.8474	0.8901	yes	no
P46248	AAT5_ARATH	2, ., 6, ., 1, ., 1	0.8474	0.9869	1.0	yes	no
P28011	AAT1_MEDSA	2, ., 6, ., 1, ., 1	0.5555	0.8583	0.9425	N/A	no
Q4R559	AATM_MACFA	2, ., 6, ., 1, ., 1	0.5294	0.8474	0.9046	N/A	no
P44425	AAT_HAEIN	2, ., 6, ., 1, ., 1	0.4492	0.8540	0.9898	yes	no
P72173	AAT_PSEAE	2, ., 6, ., 1, ., 1	0.4307	0.8605	0.9924	yes	no
Q28F67	AATM_XENTR	2, ., 6, ., 1, ., 1	0.5140	0.8474	0.9110	yes	no
Q5REB0	AATM_PONAB	2, ., 6, ., 1, ., 1	0.5268	0.8474	0.9046	yes	no
P28734	AATC_DAUCA	2, ., 6, ., 1, ., 1	0.5707	0.8583	0.9728	N/A	no
P58661	AAT_SALTY	2, ., 6, ., 1, ., 1	0.4492	0.8540	0.9898	yes	no
Q54SF7	AATC_DICDI	2, ., 6, ., 1, ., 1	0.5566	0.8540	0.8949	yes	no
P00508	AATM_CHICK	2, ., 6, ., 1, ., 1	0.5115	0.8474	0.9196	yes	no
P00507	AATM_RAT	2, ., 6, ., 1, ., 1	0.5294	0.8474	0.9046	yes	no
P00506	AATM_PIG	2, ., 6, ., 1, ., 1	0.5242	0.8474	0.9046	yes	no
P00505	AATM_HUMAN	2, ., 6, ., 1, ., 1	0.5294	0.8474	0.9046	yes	no
P08907	AATM_HORSE	2, ., 6, ., 1, ., 1	0.5140	0.8474	0.9700	yes	no
P23542	AATC_YEAST	2, ., 6, ., 1, ., 1	0.4024	0.8562	0.9401	yes	no
P26563	AATM_LUPAN	2, ., 6, ., 1, ., 1	0.8458	0.9586	0.9691	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.6.1	0.998
4th Layer	2.6.1.1	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_XVIII0158	aspartate transaminase (EC-2.6.1.1) (466 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.V.2829.1	SubName- Full=Putative uncharacterized protein; (566 aa)						•	•		0.967
	estExt_fgenesh4_pm.C_LG_I0800	asparagine synthase (glutamine-hydrolyzing) (EC-6.3.5.4) (588 aa)						•	•		0.966
	estExt_Genewise1_v1.C_LG_IX3026	asparagine synthase (glutamine-hydrolyzing) (EC-6.3.5.4) (590 aa)						•	•		0.966
	gw1.IV.4171.1	proline dehydrogenase (EC-1.5.99.8) (435 aa)						•	•		0.927
	gw1.123.99.1	proline dehydrogenase (EC-1.5.99.8) (440 aa)						•	•		0.927
	eugene3.00030830	lactate dehydrogenase (EC-1.1.1.27) (351 aa)						•	•		0.911
	estExt_fgenesh4_pg.C_LG_XVI0748	adenylosuccinate synthase (EC-6.3.4.4); Plays an important role in the de novo pathway of purin [...] (491 aa)				•		•	•		0.902
	eugene3.00081537	RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (332 aa)						•	•		0.900
	estExt_Genewise1_v1.C_2730019	malate dehydrogenase (EC-1.1.1.37) (332 aa)						•	•		0.900
	eugene3.00021309	malate dehydrogenase (EC-1.1.1.37) (332 aa)						•	•		0.900

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	459
PLN02397	423	PLN02397, PLN02397, aspartate transaminase	0.0
PTZ00376	404	PTZ00376, PTZ00376, aspartate aminotransferase; Pr	0.0
PRK09257	396	PRK09257, PRK09257, aromatic amino acid aminotrans	0.0
COG1448	396	COG1448, TyrB, Aspartate/tyrosine/aromatic aminotr	0.0
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	1e-104
cd00609	350	cd00609, AAT_like, Aspartate aminotransferase fami	2e-44
COG0436	393	COG0436, COG0436, Aspartate/tyrosine/aromatic amin	8e-11
COG0079	356	COG0079, HisC, Histidinol-phosphate/aromatic amino	2e-07
PRK08637	388	PRK08637, PRK08637, hypothetical protein; Provisio	4e-06
PRK14809	357	PRK14809, PRK14809, histidinol-phosphate aminotran	8e-05

>gnl|CDD|215222 PLN02397, PLN02397, aspartate transaminase

 Score =  806 bits (2083), Expect = 0.0
 Identities = 274/423 (64%), Positives = 330/423 (78%), Gaps = 1/423 (0%)

Query: 37  AGFIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTE 96
             F+K KS  R SM AA   SRFE V  APPDPILGV+EAF AD    KLNLGVGAYRTE
Sbjct: 2   NPFLKAKSRSRSSMAAAAASSRFEHVEPAPPDPILGVTEAFLADPSPVKLNLGVGAYRTE 61

Query: 97  ELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ 156
           E +P VL+VV+KAE  +L    NKEYLPIEGLA FNK++A+L +GAD+  +KE RVATVQ
Sbjct: 62  EGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQ 121

Query: 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF 216
            LSGTGSLRL A  + R++PG+ + I +PTWGNH NIF DA VP   YRYYDPKT GLDF
Sbjct: 122 CLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDF 181

Query: 217 EGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFAS 276
           +G++ D+KAAP GSF+LLH CAHNPTG+DPTPEQWE+I+D+I+ KNH+PFFD AYQGFAS
Sbjct: 182 DGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFAS 241

Query: 277 GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRL 336
           G LD DA SVR+F   G E+LVAQSY+KN+GLY ER+GA++VVC S+D+A RVKSQLK +
Sbjct: 242 GDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLI 301

Query: 337 ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKD 396
           ARPMYSNPP+HGA IVA ++G+P LF EW  E++ MA RI ++RQKL+D+L A+   G D
Sbjct: 302 ARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSPG-D 360

Query: 397 WSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYH 456
           WS I +QIGMFSFTGLNK Q D MT ++H+YMT+DGRIS+AGLS     YLADAI     
Sbjct: 361 WSHITKQIGMFSFTGLNKEQVDRMTKEYHIYMTRDGRISMAGLSSKNVPYLADAIHAVVT 420

Query: 457 NVS 459
           N S
Sbjct: 421 NAS 423

Length = 423

>gnl|CDD|240390 PTZ00376, PTZ00376, aspartate aminotransferase; Provisional

 Score =  617 bits (1594), Expect = 0.0
 Identities = 227/403 (56%), Positives = 299/403 (74%), Gaps = 2/403 (0%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S F  V + PPDPILG++ AFKAD    K+NLG+GAYR E  +PYVL+ V+KAE ++ E+
Sbjct: 3   SLFSQVPLGPPDPILGLAAAFKADPSPSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEK 62

Query: 117 GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP 176
             +KEYLPIEGL +F +   +LLFG  +  L E+R+ATVQ LSGTG+LRL    ++R+ P
Sbjct: 63  NLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLP 122

Query: 177 GAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
               V +S+PTW NH NIF  A +   EYRYYDPKT GLDF+GM+ D++ AP GS +LLH
Sbjct: 123 AGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLH 182

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DPT EQW++IADV++ KN IPFFD+AYQGFASG LD DA ++RLFA RG+E
Sbjct: 183 ACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVE 242

Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV 355
            LVAQS+SKN+GLY ERIGA+++VC++ + AA V SQLK + RPMYS+PP+HGARI   +
Sbjct: 243 FLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRI 302

Query: 356 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKA 415
           + +P L  EW +E++ M+GRI+N+RQ L+D L A    G DW  I+ QIGMFSFTGL K 
Sbjct: 303 LSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGSPG-DWEHIINQIGMFSFTGLTKE 361

Query: 416 QSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNV 458
           Q + +  K+H+Y+  +GRIS+AGL+    +Y+A+AI D   NV
Sbjct: 362 QVERLIEKYHIYLLDNGRISVAGLTSKNVDYVAEAIHDVVRNV 404

Length = 404

>gnl|CDD|181731 PRK09257, PRK09257, aromatic amino acid aminotransferase; Provisional

 Score =  556 bits (1436), Expect = 0.0
 Identities = 205/395 (51%), Positives = 267/395 (67%), Gaps = 2/395 (0%)

Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +  AP DPILG+ EAF+AD    K+NLGVG Y+ E+ +  VL  VKKAE  +LE   
Sbjct: 2   FEHLEAAPADPILGLMEAFRADPRPDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETET 61

Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YLPIEGLAA+ +   ELLFGAD+  L   RVATVQ   GTG+LR+ A  ++R FP A
Sbjct: 62  TKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDA 121

Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           KV +S PTW NH+ IF  A +    Y YYD  T GLDF+ M+AD+  AP G  +LLHGC 
Sbjct: 122 KVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCC 181

Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTG D TPEQW+++A++++E+  IPF D+AYQGF  G L+ DA  +R FA  G+ELLV
Sbjct: 182 HNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDG-LEEDAYGLRAFAAAGLELLV 240

Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A S+SKN GLY ER+GA++VV   ++ A RV SQLK   R  YSNPP HGA IVA ++ +
Sbjct: 241 ASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILND 300

Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
           P L  EW+AE+E M  RIK +RQ L ++L AK    +D+ FI RQ GMFS++GL   Q D
Sbjct: 301 PELRAEWEAELEEMRERIKAMRQLLVEALKAKG-PSRDFDFIARQRGMFSYSGLTPEQVD 359

Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID 453
            +  ++ VY    GRI++AGL+ +  +Y+A+AI  
Sbjct: 360 RLREEFGVYAVGSGRINVAGLNESNIDYVAEAIAA 394

Length = 396

>gnl|CDD|224365 COG1448, TyrB, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score =  549 bits (1417), Expect = 0.0
 Identities = 212/398 (53%), Positives = 277/398 (69%), Gaps = 2/398 (0%)

Query: 58  RFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG 117
            FE +  AP DPILG+ EAFKAD    K+NLG+G Y+ E+ +  VL  VKKAE  +LE+ 
Sbjct: 1   MFEKIEAAPADPILGLKEAFKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQE 60

Query: 118 ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG 177
           + K YLPIEGL  F +   +LLFGAD+  L E RVATVQ L GTG+LR+AA  + R+FP 
Sbjct: 61  KTKNYLPIEGLPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPD 120

Query: 178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237
           A V IS PTW NHK IF  A +    Y YYD +T GLDF+GM+AD+K AP GS +LLHGC
Sbjct: 121 ATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGC 180

Query: 238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297
            HNPTGIDPT EQW+++AD+I+E+  IPFFD+AYQGFA G L+ DA ++RLFA  G ELL
Sbjct: 181 CHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADG-LEEDAYALRLFAEVGPELL 239

Query: 298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVG 357
           VA S+SKN GLY ER+GA++VV   ++ A RV SQLK + R  YSNPP HGA +VA ++ 
Sbjct: 240 VASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILN 299

Query: 358 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQS 417
           NP L  EW+ E+E M  RI  +RQ L D+L A   + +++ FI+ Q GMFS+TGL+  Q 
Sbjct: 300 NPELRAEWEQELEEMRQRILEMRQALVDALKAL-GAPRNFDFIISQRGMFSYTGLSPEQV 358

Query: 418 DNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSY 455
           D +  ++ +Y+   GRI++AGL+ +  +Y+A AI    
Sbjct: 359 DRLREEFGIYLVASGRINVAGLNTSNIDYVAKAIAAVL 396

Length = 396

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score =  313 bits (805), Expect = e-104
 Identities = 123/381 (32%), Positives = 168/381 (44%), Gaps = 36/381 (9%)

Query: 83  EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGA 142
             K+NLG   Y  +      L  V KAE   L  G    Y P +GL    +  A+ L   
Sbjct: 1   TDKINLGSNEYLGDS---GTLPAVAKAEKDALAGGTRNLYGPTDGLPELREALAKFLG-- 55

Query: 143 DNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWS 202
            + VLK  R A V   SG G+   A   + R  PG  +L+ +PT+ ++  IF  A     
Sbjct: 56  RSPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGEVV 115

Query: 203 EYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN 262
            Y  Y      LDF+ + A +K A  G+ ++LH   HNPTG   T E+ EK+ D+ +E N
Sbjct: 116 RYPLYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEHN 175

Query: 263 HIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS 322
            +   D AY GF  G    DA + R     G  LLV  S+SK  GL   R+G +      
Sbjct: 176 ILLLVDEAYAGFVFG--SLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNA-- 231

Query: 323 SDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQK 382
                 V SQL++LARP YS    H     A  + +P L       +E M  RIK  R  
Sbjct: 232 -----AVISQLRKLARPFYS--STHLQAAAAAALSDPLLVASE---LEEMRQRIKERRDY 281

Query: 383 LFDSLSAKDKSGKDWSFILRQIGMFSFTGLN----KAQSDNMTNKWHVYMTK-------- 430
           L D L A        S +  Q G F  TGL+     A +  +  +  VY+T         
Sbjct: 282 LRDGLEA-----AGLSVLPSQAGFFLLTGLDPEAALALAQVLLEEVGVYVTPGSSFGGPG 336

Query: 431 DGRISLAGLSLAKCEYLADAI 451
             RI++AG +  + E L +AI
Sbjct: 337 WLRITVAGGTEEELEELLEAI 357

Length = 357

>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family

 Score =  158 bits (401), Expect = 2e-44
 Identities = 69/381 (18%), Positives = 128/381 (33%), Gaps = 48/381 (12%)

Query: 86  LNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNS 145
           ++L +G          +  +   A      R     Y P  GL    +  AE L      
Sbjct: 1   IDLSIGEPDFPPPPEVLEALAAAAL-----RAGLLGYYPDPGLPELREAIAEWLGRRGGV 55

Query: 146 VLKEQRVATVQGLSGTGSLRLAA-ALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEY 204
            +  + +  V       +L L   AL+    PG +VL+  PT+  ++     A       
Sbjct: 56  DVPPEEI--VVTNGAQEALSLLLRALLN---PGDEVLVPDPTYPGYEAAARLAGAEVVPV 110

Query: 205 RYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHI 264
              +     LD E  + +    P    + L+   +NPTG   + E+ E++A++ ++   +
Sbjct: 111 PLDEEGGFLLDLE--LLEAAKTPKTKLLYLNNP-NNPTGAVLSEEELEELAELAKKHGIL 167

Query: 265 PFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD 324
              D AY        D +             ++V +S+SK  GL   RIG +  +     
Sbjct: 168 IISDEAYAELVY---DGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYL--IAP--- 219

Query: 325 LAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF 384
               +  +LK+L     S P        A      A  D+ +  +E +  R +  R  L 
Sbjct: 220 -PEELLERLKKLLPYTTSGPSTLSQAAAA------AALDDGEEHLEELRERYRRRRDALL 272

Query: 385 DSLSAKDKSGKDWSFILRQIGMFSFTGLNK----AQSDNMTNKWHVYMTKDG-------- 432
           ++L            +    G F +  L +       + +  +  V +            
Sbjct: 273 EALKELG----PLVVVKPSGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGEGGEG 328

Query: 433 --RISLAGLSLAKCEYLADAI 451
             R+S A     + E   + +
Sbjct: 329 FVRLSFAT-PEEELEEALERL 348

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350

>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score = 63.1 bits (154), Expect = 8e-11
 Identities = 69/331 (20%), Positives = 123/331 (37%), Gaps = 51/331 (15%)

Query: 75  EAFKADTDEKKLNLGVGAYRTEELQP------YVLDVVKKAENLMLERGENKEYLPIEGL 128
            A +    E  ++L +G       +P      ++++   +A    LE G    Y P  G+
Sbjct: 20  AAAELKGKEDVIDLSIG-------EPDFPTPEHIIEAAIEA----LEEGGTH-YTPSAGI 67

Query: 129 AAFNKVTAELL---FGADNSVLKEQRVATVQGLSGTGSLRLAA-ALIERYFPGAKVLISS 184
               +  AE     +G D  V  E+ +    G     +L LA  AL+    PG +VLI  
Sbjct: 68  PELREAIAEKYKRRYGLD--VDPEEEIIVTAG--AKEALFLAFLALLN---PGDEVLIPD 120

Query: 185 PTWGNHKNIFN--DARVPWSEYRYYDPKTVGLDFEGMIADIKAA--PGGSFILLHGCAHN 240
           P + +++        +                 F+  + D++AA  P    I+L    +N
Sbjct: 121 PGYPSYEAAVKLAGGKP-----VPVPLDEEENGFKPDLEDLEAAITPKTKAIIL-NSPNN 174

Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTG   + E+ + I ++ +E + I   D  Y+         +  S+   A      +   
Sbjct: 175 PTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYD--GAEHPSILELAGARDRTITIN 232

Query: 301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPA 360
           S+SK  G+   RIG +  V    +L A     L++L   + S  P          +  P 
Sbjct: 233 SFSKTYGMTGWRIGWV--VGPPEELIAA----LRKLKSYLTSCAPTPAQYAAIAALNGPQ 286

Query: 361 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD 391
             +     +E M    +  R  L ++L+   
Sbjct: 287 SDE----VVEEMREEYRERRDLLVEALNEIG 313

Length = 393

>gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 53/229 (23%), Positives = 89/229 (38%), Gaps = 37/229 (16%)

Query: 167 AAALIERYF-----PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA 221
           +  LIE        PG  VLI  PT+  ++     A     +      K   LD + ++A
Sbjct: 84  SDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPL---KEFRLDLDAILA 140

Query: 222 DIKAAPGGSFILLHGCA-HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD 280
            I+      F+    C  +NPTG     E+   + + +  +  +   D AY  F+     
Sbjct: 141 AIRDKTKLVFL----CNPNNPTGTLLPREELRALLEAL-PEGGLVVIDEAYIEFS----- 190

Query: 281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPM 340
              SS+ L       L+V +++SK  GL   R+G      ++ +L A +        RP 
Sbjct: 191 -PESSLELLKYPP-NLIVLRTFSKAFGLAGLRVG---YAIANPELIAAL-----NKVRPP 240

Query: 341 YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA 389
           ++          A      AL D     +E    RI+  R++L+ +L A
Sbjct: 241 FNVS------SPALAAAIAALRDA--DYLEESVERIREERERLYAALKA 281

Length = 356

>gnl|CDD|181512 PRK08637, PRK08637, hypothetical protein; Provisional

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 176 PGAKVLISSPTWGNHKNIFNDAR-VPWSEYRYYDPKTVGLDFEGMIADIKAA-PGGSFIL 233
            G  VL+    WGN+K  FN  R      Y  +D +  G D + +   ++AA   G  I+
Sbjct: 92  QGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFD-EDGGFDTDALKEALQAAYNKGKVIV 150

Query: 234 LHGCAHNPTGIDPTPEQWEKIADVIQE-----KNHIPFFDVAYQGF 274
           +    +NPTG  PT ++   I + I+E        +   D AY G 
Sbjct: 151 ILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGL 196

Length = 388

>gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase; Provisional

 Score = 44.4 bits (105), Expect = 8e-05
 Identities = 52/171 (30%), Positives = 77/171 (45%), Gaps = 15/171 (8%)

Query: 160 GTGSLR-LAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEG 218
           G G+L  LA A+++   PG  VL+  P +  +      AR    E R Y P +   DFE 
Sbjct: 91  GDGALDYLARAMLD---PGDTVLVPDPGFAYYGM---SARYHHGEVREY-PVSKADDFEQ 143

Query: 219 MIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGS 278
               +  A  G  I+     HNPTG +   ++ E +A+   E+  +   D AY  FA   
Sbjct: 144 TADTVLDAYDGERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLV-VVDEAYGEFA--- 199

Query: 279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARV 329
                S+V L   R  ++ V +++SK  GL   R+G   V    +D  ARV
Sbjct: 200 --ERPSAVALVEERD-DVAVLRTFSKAYGLAGLRLGYAVVPEEWADAYARV 247

Length = 357

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	459
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	100.0
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	100.0
PLN02397	423	aspartate transaminase	100.0
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	100.0
PTZ00376	404	aspartate aminotransferase; Provisional	100.0
PRK09257	396	aromatic amino acid aminotransferase; Provisional	100.0
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	100.0
PLN00175	413	aminotransferase family protein; Provisional	100.0
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	100.0
PRK07366	388	succinyldiaminopimelate transaminase; Validated	100.0
PTZ00377	481	alanine aminotransferase; Provisional	100.0
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	100.0
PRK07681	399	aspartate aminotransferase; Provisional	100.0
PLN02187	462	rooty/superroot1	100.0
PRK06855	433	aminotransferase; Validated	100.0
PRK06207	405	aspartate aminotransferase; Provisional	100.0
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	100.0
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	100.0
PRK08068	389	transaminase; Reviewed	100.0
PRK08636	403	aspartate aminotransferase; Provisional	100.0
PRK07682	378	hypothetical protein; Validated	100.0
PRK06348	384	aspartate aminotransferase; Provisional	100.0
PLN02231	534	alanine transaminase	100.0
PLN02656	409	tyrosine transaminase	100.0
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	100.0
PRK08960	387	hypothetical protein; Provisional	100.0
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	100.0
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	100.0
PRK06290	410	aspartate aminotransferase; Provisional	100.0
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	100.0
PRK09148	405	aminotransferase; Validated	100.0
PRK12414	384	putative aminotransferase; Provisional	100.0
PRK06107	402	aspartate aminotransferase; Provisional	100.0
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	100.0
PTZ00433	412	tyrosine aminotransferase; Provisional	100.0
PRK05942	394	aspartate aminotransferase; Provisional	100.0
PRK07337	388	aminotransferase; Validated	100.0
PRK06108	382	aspartate aminotransferase; Provisional	100.0
PRK07309	391	aromatic amino acid aminotransferase; Validated	100.0
PRK05957	389	aspartate aminotransferase; Provisional	100.0
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	100.0
PRK07324	373	transaminase; Validated	100.0
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	100.0
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	100.0
PRK07683	387	aminotransferase A; Validated	100.0
PRK08912	387	hypothetical protein; Provisional	100.0
PRK08361	391	aspartate aminotransferase; Provisional	100.0
PRK05764	393	aspartate aminotransferase; Provisional	100.0
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	100.0
PRK09082	386	methionine aminotransferase; Validated	100.0
PRK08637	388	hypothetical protein; Provisional	100.0
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	100.0
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	100.0
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	100.0
PRK07777	387	aminotransferase; Validated	100.0
PRK05839	374	hypothetical protein; Provisional	100.0
PRK08175	395	aminotransferase; Validated	100.0
PRK08363	398	alanine aminotransferase; Validated	100.0
PRK09265	404	aminotransferase AlaT; Validated	100.0
PRK07550	386	hypothetical protein; Provisional	100.0
PLN02368	407	alanine transaminase	100.0
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	100.0
PRK09275	527	aspartate aminotransferase; Provisional	100.0
PRK07568	397	aspartate aminotransferase; Provisional	100.0
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	100.0
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	100.0
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	100.0
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	100.0
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	100.0
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	100.0
PRK01533	366	histidinol-phosphate aminotransferase; Validated	100.0
PRK06836	394	aspartate aminotransferase; Provisional	100.0
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	100.0
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	100.0
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	100.0
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	100.0
PRK06358	354	threonine-phosphate decarboxylase; Provisional	100.0
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	100.0
PLN02672	1082	methionine S-methyltransferase	100.0
PRK09105	370	putative aminotransferase; Provisional	100.0
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	100.0
PRK08056	356	threonine-phosphate decarboxylase; Provisional	100.0
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	100.0
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	100.0
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	100.0
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	100.0
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	100.0
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	100.0
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	100.0
PRK06225	380	aspartate aminotransferase; Provisional	100.0
PRK07392	360	threonine-phosphate decarboxylase; Validated	100.0
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	100.0
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	100.0
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	100.0
PRK07908	349	hypothetical protein; Provisional	100.0
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	100.0
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	100.0
PRK02731	367	histidinol-phosphate aminotransferase; Validated	100.0
PRK03321	352	putative aminotransferase; Provisional	100.0
PRK06425	332	histidinol-phosphate aminotransferase; Validated	100.0
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	100.0
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	100.0
KOG0634	472	consensus Aromatic amino acid aminotransferase and	100.0
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	100.0
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	100.0
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	100.0
PRK00950	361	histidinol-phosphate aminotransferase; Validated	100.0
PRK08354	311	putative aminotransferase; Provisional	100.0
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	100.0
cd00609	350	AAT_like Aspartate aminotransferase family. This f	100.0
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	100.0
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	99.98
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.97
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.97
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.97
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.97
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.97
PRK10534	333	L-threonine aldolase; Provisional	99.97
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.96
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.96
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.96
PRK02948	381	cysteine desulfurase; Provisional	99.96
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.96
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.96
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.96
PLN02822	481	serine palmitoyltransferase	99.96
PLN02721	353	threonine aldolase	99.96
PLN02483	489	serine palmitoyltransferase	99.96
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.96
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.96
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.96
PRK02627	396	acetylornithine aminotransferase; Provisional	99.96
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.96
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.96
PRK13392	410	5-aminolevulinate synthase; Provisional	99.95
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.95
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.95
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.95
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.95
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.95
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.95
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.95
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.95
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.95
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.95
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.94
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.94
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.94
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.94
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.94
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.94
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.94
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.94
PLN02409	401	serine--glyoxylate aminotransaminase	99.94
PLN02242	418	methionine gamma-lyase	99.93
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.93
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.93
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.93
PRK09064	407	5-aminolevulinate synthase; Validated	99.93
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.93
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.93
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.93
PRK07179	407	hypothetical protein; Provisional	99.93
PRK07049	427	methionine gamma-lyase; Validated	99.93
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.93
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.92
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.92
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.92
PRK13393	406	5-aminolevulinate synthase; Provisional	99.92
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.92
PRK14012	404	cysteine desulfurase; Provisional	99.92
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.92
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.91
PRK04260	375	acetylornithine aminotransferase; Provisional	99.91
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.91
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.91
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.91
PRK06234	400	methionine gamma-lyase; Provisional	99.91
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.91
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.91
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.9
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.9
PLN02651	364	cysteine desulfurase	99.9
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.9
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.89
PLN00144	382	acetylornithine transaminase	99.89
PRK06460	376	hypothetical protein; Provisional	99.89
PRK07582	366	cystathionine gamma-lyase; Validated	99.89
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.88
PRK06767	386	methionine gamma-lyase; Provisional	99.88
PRK08249	398	cystathionine gamma-synthase; Provisional	99.88
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.88
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.88
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.88
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.88
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.87
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.87
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.87
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.87
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.87
PRK08776	405	cystathionine gamma-synthase; Provisional	99.87
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.87
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.87
PRK08045	386	cystathionine gamma-synthase; Provisional	99.87
PLN02624	474	ornithine-delta-aminotransferase	99.87
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.87
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.87
PRK07811	388	cystathionine gamma-synthase; Provisional	99.86
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.86
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.86
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.86
PRK07503	403	methionine gamma-lyase; Provisional	99.86
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.86
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.86
PRK07505	402	hypothetical protein; Provisional	99.86
PRK07050	394	cystathionine beta-lyase; Provisional	99.85
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.85
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.85
PRK08861	388	cystathionine gamma-synthase; Provisional	99.85
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.85
PRK08574	385	cystathionine gamma-synthase; Provisional	99.84
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.84
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.84
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.84
PRK09028	394	cystathionine beta-lyase; Provisional	99.84
PRK08064	390	cystathionine beta-lyase; Provisional	99.84
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.84
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.83
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.83
PRK05939	397	hypothetical protein; Provisional	99.83
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.83
PRK05968	389	hypothetical protein; Provisional	99.83
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.83
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.82
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.82
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.82
PLN02955	476	8-amino-7-oxononanoate synthase	99.82
PRK07671	377	cystathionine beta-lyase; Provisional	99.82
PRK02769	380	histidine decarboxylase; Provisional	99.82
PLN02509	464	cystathionine beta-lyase	99.82
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.82
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.81
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.81
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.81
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.81
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.8
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.8
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.8
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.8
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.8
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.8
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.79
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.79
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.79
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.79
PRK05967	395	cystathionine beta-lyase; Provisional	99.78
PLN03032	374	serine decarboxylase; Provisional	99.78
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.77
PLN02724	805	Molybdenum cofactor sulfurase	99.77
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.76
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.76
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.76
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.76
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.76
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.75
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.75
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.75
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.75
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.75
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.75
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.74
PRK03080	378	phosphoserine aminotransferase; Provisional	99.74
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.74
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.73
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.73
PRK06541	460	hypothetical protein; Provisional	99.73
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.72
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.72
PRK13237	460	tyrosine phenol-lyase; Provisional	99.72
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.71
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.71
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.71
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.7
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.7
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.69
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.69
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.69
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.69
PRK08114	395	cystathionine beta-lyase; Provisional	99.68
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.68
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.67
PRK04311	464	selenocysteine synthase; Provisional	99.67
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.67
PRK07046	453	aminotransferase; Validated	99.66
PLN02880	490	tyrosine decarboxylase	99.66
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.66
PLN02271	586	serine hydroxymethyltransferase	99.66
PRK06062	451	hypothetical protein; Provisional	99.65
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.65
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.65
PLN02263	470	serine decarboxylase	99.65
PRK07678	451	aminotransferase; Validated	99.65
PLN02590	539	probable tyrosine decarboxylase	99.65
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	99.65
PRK07482	461	hypothetical protein; Provisional	99.64
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.64
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.64
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.64
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.63
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.63
PRK06434	384	cystathionine gamma-lyase; Validated	99.63
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.63
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.62
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.62
PRK05965	459	hypothetical protein; Provisional	99.62
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.62
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.62
PRK07481	449	hypothetical protein; Provisional	99.62
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.62
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.62
PRK06917	447	hypothetical protein; Provisional	99.61
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.61
PRK06105	460	aminotransferase; Provisional	99.61
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.61
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.61
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.61
PRK07036	466	hypothetical protein; Provisional	99.6
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.6
PRK07483	443	hypothetical protein; Provisional	99.59
PRK12403	460	putative aminotransferase; Provisional	99.58
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	99.58
PRK07480	456	putative aminotransferase; Validated	99.57
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.57
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.57
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.57
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.57
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.57
PRK08297	443	L-lysine aminotransferase; Provisional	99.56
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.55
PRK15029	755	arginine decarboxylase; Provisional	99.54
PRK06148	1013	hypothetical protein; Provisional	99.53
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.52
PRK06149	972	hypothetical protein; Provisional	99.52
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.52
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	99.49
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.48
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.47
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.47
PRK15400	714	lysine decarboxylase CadA; Provisional	99.46
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.45
PLN02452	365	phosphoserine transaminase	99.45
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.45
PRK13578	720	ornithine decarboxylase; Provisional	99.43
PRK05367	954	glycine dehydrogenase; Provisional	99.42
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.41
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.4
PRK12566	954	glycine dehydrogenase; Provisional	99.4
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	99.4
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.36
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.33
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	99.3
PRK12462	364	phosphoserine aminotransferase; Provisional	99.29
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.29
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	99.29
PRK05367	954	glycine dehydrogenase; Provisional	99.28
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.26
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.23
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.21
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	99.16
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	99.06
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	99.05
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	98.97
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	98.95
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	98.91
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	98.9
COG3844	407	Kynureninase [Amino acid transport and metabolism]	98.85
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	98.83
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	98.79
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	98.78
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	98.7
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	98.67
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	98.62
COG4100	416	Cystathionine beta-lyase family protein involved i	98.61
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	98.55
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	98.33
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	98.26
KOG0629	510	consensus Glutamate decarboxylase and related prot	98.26
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	98.19
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	98.03
PRK12566	954	glycine dehydrogenase; Provisional	97.74
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	97.25
PLN02672	1082	methionine S-methyltransferase	96.65
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	96.3
KOG2790	370	consensus Phosphoserine aminotransferase [Coenzyme	95.55
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	94.33
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	84.0

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.4e-67  Score=485.92  Aligned_cols=395  Identities=53%  Similarity=0.915  Sum_probs=379.1

Q ss_pred             cCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHH
Q 012647           59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL  138 (459)
Q Consensus        59 ~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~  138 (459)
                      |++++..++|||+++.+.+++|+++++|||++|.|.|+.+.+|+.+.|.+|-+..++......|.|..|.+.++++++++
T Consensus         2 F~~i~~~p~DpIlgL~e~f~~D~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G~~~f~~~~~~l   81 (396)
T COG1448           2 FEKIEAAPADPILGLKEAFKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIEGLPEFLEAVQKL   81 (396)
T ss_pred             ccccccCCCCchhHHHHHHhcCCCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccccccccCCcCCcHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999988776678999999999999999999


Q ss_pred             HhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHH
Q 012647          139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEG  218 (459)
Q Consensus       139 l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~  218 (459)
                      +++.....+..++|..+||.|||||+.++++++..+.|..+|++++|+|++|..+++..|.++..+|+.+.++..+|++.
T Consensus        82 lFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~  161 (396)
T COG1448          82 LFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDG  161 (396)
T ss_pred             hcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHH
Confidence            99987777888999999999999999999999999999899999999999999999999999999999988888999999


Q ss_pred             HHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012647          219 MIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (459)
Q Consensus       219 l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (459)
                      +.+.++..+++.+++++.++|||||..++.++|++|+++.++++++.+.|-|||+|+.+ .+.|.+.++.++.....+++
T Consensus       162 mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~G-leeDa~~lR~~a~~~~~~lv  240 (396)
T COG1448         162 MLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADG-LEEDAYALRLFAEVGPELLV  240 (396)
T ss_pred             HHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccc-hHHHHHHHHHHHHhCCcEEE
Confidence            99999999999999999999999999999999999999999999999999999999987 88999999999988888999


Q ss_pred             EEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012647          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  378 (459)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  378 (459)
                      +.||||+||+.|.|+|++.+++.+.+...++.+++....|..|++||..++.+++.+|+++++..+|.++++.++.++.+
T Consensus       241 a~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~  320 (396)
T COG1448         241 ASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILE  320 (396)
T ss_pred             EehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHHHHHHH
Q 012647          379 VRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       379 ~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~l~~~~  455 (459)
                      +|+.|.+.|+ +.+-+.+|+++..+.|||.++|++++++.+|.+++||+++..||||++++++.++++++++|.+++
T Consensus       321 mR~~lv~~L~-~~~~~~~f~~i~~Q~GMFsy~Gls~~QV~rLree~~IY~v~sGRi~vaGl~~~ni~~va~ai~~v~  396 (396)
T COG1448         321 MRQALVDALK-ALGAPRNFDFIISQRGMFSYTGLSPEQVDRLREEFGIYLVASGRINVAGLNTSNIDYVAKAIAAVL  396 (396)
T ss_pred             HHHHHHHHHH-hhCCCcccchHhhcCceeecCCCCHHHHHHHHHhccEEEecCCeeeeccCChhhHHHHHHHHHhhC
Confidence            9999999999 887777899999999999999999999999999999999999999999999999999999998763

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=100.00  E-value=1.4e-64  Score=456.91  Aligned_cols=402  Identities=60%  Similarity=1.016  Sum_probs=389.0

Q ss_pred             ccccCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHH
Q 012647           56 VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVT  135 (459)
Q Consensus        56 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~ai  135 (459)
                      .+++++|++.|||||+++.++|++|+++.+|||++|.|+|+++.|++.|.|.+|.++........+|.|+.|+++|.+..
T Consensus        25 ~s~~s~V~maPpDpILGVTeAfk~D~n~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~~ldKEYlpI~Gl~eF~k~s  104 (427)
T KOG1411|consen   25 SSWWSHVEMAPPDPILGVTEAFKKDPNPKKINLGVGAYRDDNGKPYVLPSVRKAEQQLASLSLDKEYLPITGLAEFNKLS  104 (427)
T ss_pred             cchhhcCCCCCCCCcccHHHHHhcCCCcceeeecccceecCCCCeeeeHHHHHHHHHHhhhcccchhccccchHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999988766678999999999999999


Q ss_pred             HHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCC
Q 012647          136 AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD  215 (459)
Q Consensus       136 a~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d  215 (459)
                      ++++.+.....+..++|+.+|+.+||+++.+.+.+++.+.++..|.+|+|+|.++.++++.+|+.+..+.+++..+.++|
T Consensus       105 akLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld  184 (427)
T KOG1411|consen  105 AKLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLD  184 (427)
T ss_pred             HHHhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCcccccCccccccCcceeeeeeccccccccc
Confidence            99999998888889999999999999999999999999999999999999999999999999999999999888899999


Q ss_pred             HHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012647          216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME  295 (459)
Q Consensus       216 ~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~  295 (459)
                      ++.+.+.+.+.++...++++.+.|||||+..+.++|++|.++.++++.+.+.|.+||+|..++.+.|.++++.|++.+.+
T Consensus       185 ~~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~  264 (427)
T KOG1411|consen  185 FKGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHE  264 (427)
T ss_pred             hHHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012647          296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR  375 (459)
Q Consensus       296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~  375 (459)
                      ++++.||.|++|+.|.|+|.+.++|.+.+...++.++++.+.+.++++||..+++++..+|+++++..+|..+++.+.++
T Consensus       265 ~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadR  344 (427)
T KOG1411|consen  265 ILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADR  344 (427)
T ss_pred             eEeehhhhhhcchhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHHHHHHH
Q 012647          376 IKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       376 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~l~~~~  455 (459)
                      +...|+.|.+.|+ +.|.+.+|+++..+-|+|+|+|+++++++.|.+++.|+++..||||+++++..++.+++++|.++.
T Consensus       345 i~~mR~~L~d~L~-~~gs~~~W~hI~~QIGMF~fTgl~peQv~~l~ke~~iYmT~dGRiS~aG~ss~nV~yLa~aih~vt  423 (427)
T KOG1411|consen  345 IISMRQQLFDALE-KEGSPGNWSHITKQIGMFCFTGLNPEQVDWLTKEYHIYLTKDGRISMAGLSSSNVPYLADAIHAVT  423 (427)
T ss_pred             hhhhHHHHhHHhh-cCCCCccHHHHHHhhheeeecCCCHHHHHHHHhhheeeeccCceEeeccccccCCcccchhhHhHh
Confidence            9999999999999 998889999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhc
Q 012647          456 HNV  458 (459)
Q Consensus       456 ~~~  458 (459)
                      +..
T Consensus       424 k~~  426 (427)
T KOG1411|consen  424 KNT  426 (427)
T ss_pred             cCC
Confidence            754

>PLN02397 aspartate transaminase

Probab=100.00  E-value=4.9e-61  Score=481.32  Aligned_cols=422  Identities=64%  Similarity=1.064  Sum_probs=351.9

Q ss_pred             cccccccccccchhhhhhccccccCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhh
Q 012647           36 TAGFIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE  115 (459)
Q Consensus        36 ~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~  115 (459)
                      ++||.+.+++.+-+|+.....+.|+++...++++|..+.+.++.+..+.+++|+.|.+.+..++|.+.+.+.++....+.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~   80 (423)
T PLN02397          1 SNPFLKAKSRSRSSMAAAAASSRFEHVEPAPPDPILGVTEAFLADPSPVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLA   80 (423)
T ss_pred             CCcccccccccccchhhhhhhhHHHcCCcCCCChHHHHHHHHhhCCCcceEecccceeeCCCCCcccchHHHHHHHHhhc
Confidence            36788888899999987766677999999999999998888877777789999999754666666556777777766554


Q ss_pred             cCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh
Q 012647          116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN  195 (459)
Q Consensus       116 ~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~  195 (459)
                      .+...+|++..|.++||+++++++.+.++....+++|..+++.+|+++..++..++..+.|||+|++++|+|+.|...++
T Consensus        81 ~~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~  160 (423)
T PLN02397         81 GSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHHNIFR  160 (423)
T ss_pred             cCCCCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHH
Confidence            34445899999999999999999877655444455665556788888877665566666799999999999999999999


Q ss_pred             hCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012647          196 DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFA  275 (459)
Q Consensus       196 ~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~  275 (459)
                      .+|++++.+|+.+++++++|++.+++.+....++++++++++||||||.+++.+++++|+++|++||++||+||+|.++.
T Consensus       161 ~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~  240 (423)
T PLN02397        161 DAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFA  240 (423)
T ss_pred             HcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCcc
Confidence            99999999998544468999999998887543478899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHH
Q 012647          276 SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV  355 (459)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (459)
                      +++...+..++..+....+++++++||||.|+++|||+||+++++++++.++.+.+.+....+..+.+++.++|.++..+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~  320 (423)
T PLN02397        241 SGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATI  320 (423)
T ss_pred             CCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHH
Confidence            75311123344444444457999999999999999999999654667776666776666666566667888999999999


Q ss_pred             hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEE
Q 012647          356 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRIS  435 (459)
Q Consensus       356 L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis  435 (459)
                      |+++++.+.|.++++++++.++++|+.+.+.|+ ++|.+..|++..|+||||+|++++.+++++|++++||++.++|||+
T Consensus       321 L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~-~~~~~~~~~~~~p~gg~fl~~~l~~~~~~~Ll~~~~V~v~~~~Ri~  399 (423)
T PLN02397        321 LGDPELFSEWTKELKGMADRIISMRQKLYDALE-ARGSPGDWSHITKQIGMFSFTGLNKEQVDRMTKEYHIYMTRDGRIS  399 (423)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCCcccCCceEEEecCCCHHHHHHHHHhCCEEECCCCeEE
Confidence            999888888888899999999999999999999 8875555788889999999999998999999999999999999999


Q ss_pred             EccCChhhHHHHHHHHHHHHhhc
Q 012647          436 LAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       436 ~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      +++.+++++++++++|++++...
T Consensus       400 ~~~~~~~~i~~~~~~i~~~~~~~  422 (423)
T PLN02397        400 MAGLSSKNVPYLADAIHAVVTNA  422 (423)
T ss_pred             EeeCCHHHHHHHHHHHHHHHhcc
Confidence            99789999999999999998743

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=100.00  E-value=2.8e-59  Score=416.92  Aligned_cols=402  Identities=47%  Similarity=0.835  Sum_probs=382.1

Q ss_pred             ccccCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhc-CCCCCCCCCcccHHHHHH
Q 012647           56 VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GENKEYLPIEGLAAFNKV  134 (459)
Q Consensus        56 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~Y~~~~g~~~lr~a  134 (459)
                      ++.|..++..+|+.++.+.+.++.+..+.++||++|.|+++++.||+.|.|+++-..+.++ ...++|.|..|.+.|+++
T Consensus         3 ~s~f~~I~~a~p~~vf~~~~~y~~d~~p~KvnL~igAYRtd~g~PWvLPvVk~~e~~i~~d~s~NHEYLpi~Gl~~F~~~   82 (410)
T KOG1412|consen    3 MSFFANIPVAPPIEVFKLNASYGEDLDPVKVNLGIGAYRTDDGKPWVLPVVKKAEKKIANDQSLNHEYLPILGLPTFTKA   82 (410)
T ss_pred             cchhcCCccCChHHHHhhHHHhcccCCcceeecccceEEcCCCCeeEehhhhhhhhhccCchhccchhccccCchhhhhh
Confidence            3689999999999999999999989899999999999999999999999999988887644 356899999999999999


Q ss_pred             HHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCC-CeeeeeeecCCCCC
Q 012647          135 TAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARV-PWSEYRYYDPKTVG  213 (459)
Q Consensus       135 ia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~-~v~~v~~~~~~~~~  213 (459)
                      .++.+.+.....+.++++.-+|+.+||||+.+++.++..+.+..+|.+..|+|.++..+++..|+ ++..+++-+.+.-.
T Consensus        83 A~el~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~  162 (410)
T KOG1412|consen   83 ATELLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKC  162 (410)
T ss_pred             hHHHhcCCCchhhhhccccceeeccccchhhhhHHHHHHhcccceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCce
Confidence            99999999888888999999999999999999999999999889999999999999999999994 57788887777889


Q ss_pred             CCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC
Q 012647          214 LDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (459)
Q Consensus       214 ~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~  293 (459)
                      +|++.+...++..|+...++++.+.|||||..+++++|.+|+++.++++++.+.|-+||+|..++.+.|.|.++.+++.+
T Consensus       163 ~d~e~~Lsdl~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g  242 (410)
T KOG1412|consen  163 VDLEGFLSDLESAPEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQG  242 (410)
T ss_pred             ecHHHHHHHHhhCCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcC
Confidence            99999999999999888888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHH
Q 012647          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMA  373 (459)
Q Consensus       294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~  373 (459)
                      ..++++.||+|+||+.+.|+|-+.++..++..+..+.+++..+++..+++||..+++++..+|+.+++.++|.+.++.+.
T Consensus       243 ~e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~Ms  322 (410)
T KOG1412|consen  243 FELFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMS  322 (410)
T ss_pred             CeEEEEhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHHHHH
Q 012647          374 GRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID  453 (459)
Q Consensus       374 ~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~l~~  453 (459)
                      .++++.|..|++.|. .++.|+.|+++..+.|+|.|+|+++..++.|.++|+|++.+.|||++++++..++|++.++|.+
T Consensus       323 sRI~~MR~aLrd~L~-aL~TPGtWDHI~~QiGMFSyTGLtp~qV~~li~~h~vyLl~~GRInisGLN~~NveyVAkAIde  401 (410)
T KOG1412|consen  323 SRIKKMRTALRDHLV-ALKTPGTWDHITQQIGMFSYTGLTPAQVDHLIENHKVYLLSDGRINISGLNMKNVEYVAKAIDE  401 (410)
T ss_pred             HHHHHHHHHHHHHHH-hcCCCCcHHHHHhhccceeecCCCHHHHHHHHHhceEEEecCCcEeeeccccccHHHHHHHHHH
Confidence            999999999999999 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhc
Q 012647          454 SYHNV  458 (459)
Q Consensus       454 ~~~~~  458 (459)
                      .+..+
T Consensus       402 ~Vr~~  406 (410)
T KOG1412|consen  402 TVRAI  406 (410)
T ss_pred             HHHhh
Confidence            98764

>PTZ00376 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.3e-58  Score=462.59  Aligned_cols=398  Identities=56%  Similarity=0.985  Sum_probs=324.6

Q ss_pred             cCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHH
Q 012647           59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL  138 (459)
Q Consensus        59 ~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~  138 (459)
                      +.++...+++++.++.+.++.+.+++++||+.|.|.|..+...+.+.+.+++.+.+......+|+|..|.++||++++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~   84 (404)
T PTZ00376          5 FSQVPLGPPDPILGLAAAFKADPSPSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKL   84 (404)
T ss_pred             hhcCCcCCCChHHHHHHHHhhcCCcccEecccceeECCCCCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHHH
Confidence            55666667777877777676554568999999997333332222345555555444323347899999999999999999


Q ss_pred             HhcCCCCccccCceEEeecccchhHHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHH
Q 012647          139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIE-RYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFE  217 (459)
Q Consensus       139 l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~-~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e  217 (459)
                      +.+.++..+++++|++.+|.|+++++.++..++. .+.|||+|++++|+|+.|...++..|++++.+|+.+++++++|++
T Consensus        85 ~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~  164 (404)
T PTZ00376         85 LFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFD  164 (404)
T ss_pred             hcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCHH
Confidence            8777666678899985559999999999855443 356999999999999999999999999999999954556899999


Q ss_pred             HHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEE
Q 012647          218 GMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (459)
Q Consensus       218 ~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i  297 (459)
                      .++++++...++++++++|+||||||.++|.+++++|+++|++||++||+||+|.++.+++...+..++..+....++++
T Consensus       165 ~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi  244 (404)
T PTZ00376        165 GMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFL  244 (404)
T ss_pred             HHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEE
Confidence            99999975334578888999999999999999999999999999999999999999987531112233434333445899


Q ss_pred             EEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012647          298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  377 (459)
Q Consensus       298 ~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  377 (459)
                      +++||||.|+++|||+||+++++.+++..+.+.+.+....+..+.+++.++|.++..+|+++++.+.|.+++++.+++++
T Consensus       245 ~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  324 (404)
T PTZ00376        245 VAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQ  324 (404)
T ss_pred             EEEeCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999996546688877777776665555556677888999999999998877778888899999999


Q ss_pred             HHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHHHHHHHhh
Q 012647          378 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       378 ~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                      ++++.+.+.|+ +++.+..|.+..++||||+|++++.+++++|++++||.+.||||||+++++.+++++++++|++++..
T Consensus       325 ~~r~~l~~~L~-~~~~~~~~~~~~p~gg~f~~~~~~~~~~~~L~~~~~v~v~p~~Ris~~~~~~~~~~~~~~~l~~~~~~  403 (404)
T PTZ00376        325 NMRQLLYDELK-ALGSPGDWEHIINQIGMFSFTGLTKEQVERLIEKYHIYLLDNGRISVAGLTSKNVDYVAEAIHDVVRN  403 (404)
T ss_pred             HHHHHHHHHHH-hcCCCCcccccccCceEEEecCCCHHHHHHHHHhCCEeecCCCeEEEeccCHHhHHHHHHHHHHHHhc
Confidence            99999999999 87655446677899999999999999999999999999999999999877999999999999998864

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=100.00  E-value=7.6e-58  Score=456.38  Aligned_cols=393  Identities=50%  Similarity=0.870  Sum_probs=323.5

Q ss_pred             cCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHH
Q 012647           59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL  138 (459)
Q Consensus        59 ~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~  138 (459)
                      ++++...+++++..+...++.+..+++|||+.|.|.+++..++..+.+.+++.+.+......+|++..|.++||++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~   81 (396)
T PRK09257          2 FEHLEAAPADPILGLMEAFRADPRPDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQEL   81 (396)
T ss_pred             cccCCCCCCChHHHHHHHHhhCCCcCcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHH
Confidence            45566677778877776666544568999999987444333333478899988877544446899999999999999999


Q ss_pred             HhcCCCCccccCce--EEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCH
Q 012647          139 LFGADNSVLKEQRV--ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF  216 (459)
Q Consensus       139 l~~~~~~~~~~~~i--~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~  216 (459)
                      +.+.++..+++++|  ++  |+|+++++.++..++..+.|||+|++++|+|+.|...++..|++++.+|+.+++++++|+
T Consensus        82 ~~~~~~~~~~~~~i~v~i--T~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~  159 (396)
T PRK09257         82 LFGADSPALAAGRVATVQ--TPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDF  159 (396)
T ss_pred             hcCCCCcccccCeEEEEe--cCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCH
Confidence            98776666678887  77  999999999986555556899999999999999999999999999999984445689999


Q ss_pred             HHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeE
Q 012647          217 EGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL  296 (459)
Q Consensus       217 e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~  296 (459)
                      +.++++++..+++++++++++||||||.++|.+++++|+++|++||++||+||+|.++.++. +.+..++..+....+++
T Consensus       160 ~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~-~~~~~~~~~~~~~~~~v  238 (396)
T PRK09257        160 DAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGL-EEDAYGLRAFAAAGLEL  238 (396)
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccch-HHHHHHHHHHHhcCCcE
Confidence            99999987544457888889999999999999999999999999999999999999998641 11234444444445689


Q ss_pred             EEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012647          297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI  376 (459)
Q Consensus       297 i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~  376 (459)
                      ++++||||.|+++|||+||+++++++++....+...+....+..+.+++.+.|.++..+|.++++.+.|.+++++++++|
T Consensus       239 i~i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~  318 (396)
T PRK09257        239 LVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERI  318 (396)
T ss_pred             EEEEEcCCcCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999654556665555666665554455667788999999999999887777888999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHHHHHHH
Q 012647          377 KNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       377 ~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~l~~~~  455 (459)
                      +++++.+.+.|+ +++.+..+++..|+||||+|++++.+++.++++++||.+.|.|||+|++++++++++++++|++++
T Consensus       319 ~~rr~~l~~~L~-~~~~~~~~~~~~p~gg~~~w~~l~~~~~~~l~~~~~V~~~p~~ri~~~~~~~~~i~~~~~~i~~~~  396 (396)
T PRK09257        319 KAMRQLLVEALK-AKGPSRDFDFIARQRGMFSYSGLTPEQVDRLREEFGVYAVGSGRINVAGLNESNIDYVAEAIAAVL  396 (396)
T ss_pred             HHHHHHHHHHHH-hcCCCCCcccccccceEEEecCCCHHHHHHHHHcCCEEEcCCCeEEEeeCCHHHHHHHHHHHHhhC
Confidence            999999999999 875333467888999999999999889999999999999999999999889999999999998763

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=4.1e-57  Score=444.99  Aligned_cols=346  Identities=19%  Similarity=0.236  Sum_probs=298.4

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCc-eEEeecccch
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQR-VATVQGLSGT  161 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~-i~~~~t~ggt  161 (459)
                      .++|+|++|+|    +++. |+.+.+++.+++..+.. .|++..|.++||++|++++.+.++..+++++ |++  |.|++
T Consensus        28 ~~vi~l~iG~P----d~~~-p~~i~~a~~~a~~~~~~-~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiiv--t~Ga~   99 (393)
T COG0436          28 EDVIDLSIGEP----DFPT-PEHIIEAAIEALEEGGT-HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIV--TAGAK   99 (393)
T ss_pred             CCEEEeCCCCC----CCCC-CHHHHHHHHHHHhcccC-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEE--eCCHH
Confidence            57999999999    6664 88899999998876532 7889999999999999999999998888877 999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecC-CCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP-KTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~-~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      +++.++  +...+.|||+|++++|.|+.|...++.+|++++.+|++.+ ++|.+|++.+++++++   +++++++|+|||
T Consensus       100 ~al~~~--~~a~~~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~---ktk~i~ln~P~N  174 (393)
T COG0436         100 EALFLA--FLALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITP---KTKAIILNSPNN  174 (393)
T ss_pred             HHHHHH--HHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCc---cceEEEEeCCCC
Confidence            999998  5666889999999999999999999999999999998544 4899999999999997   899999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      |||.+++++++++|+++|++||++||+||+|.++.|++.  ...++..+....+++++++||||.|+|+|||+||+++  
T Consensus       175 PTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~--~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~--  250 (393)
T COG0436         175 PTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGA--EHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVG--  250 (393)
T ss_pred             CcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCC--CcCCHhhcCCCcceEEEEecccccccccccceeEeec--
Confidence            999999999999999999999999999999999999752  2334434333347899999999999999999999955  


Q ss_pred             CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012647          321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  400 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  400 (459)
                      ++++    +.+.+.+++.....+++.++|.++..+|++++. .   ..++++++.|+++|+.+.+.|. +++   +|++.
T Consensus       251 ~~~~----l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~-~---~~~~~~~~~~~~rrd~l~~~l~-~~~---g~~~~  318 (393)
T COG0436         251 PPEE----LIAALRKLKSYLTSCAPTPAQYAAIAALNGPQS-D---EVVEEMREEYRERRDLLVEALN-EIG---GLSVV  318 (393)
T ss_pred             ChHH----HHHHHHHHHHhcccCCCHHHHHHHHHHhcCccc-h---HHHHHHHHHHHHHHHHHHHHHH-hcC---Ceeec
Confidence            3366    455555556667779999999999999998743 1   2357777999999999999999 875   26788


Q ss_pred             c-CCcceeeecCCC-----HHHHHHHHhcccEEEcCC-------C----cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          401 L-RQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD-------G----RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       401 ~-~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g-------g----Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      . |+|+||+|++++     .+++.+|++++||.++||       |    |||++. +++++++++++|.+.++..
T Consensus       319 ~~p~Ga~Y~~~~i~~~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~-~~~~l~~a~~rl~~~~~~~  392 (393)
T COG0436         319 KPPEGAFYLFPKIPELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLAT-SEETLEEALRRLARFLAEY  392 (393)
T ss_pred             cCCCeeEEEEeecCCCCCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEec-CHHHHHHHHHHHHHHHHhc
Confidence            7 889999999663     578999999999999997       2    999998 6799999999999998765

>PLN00175 aminotransferase family protein; Provisional

Probab=100.00  E-value=1.4e-50  Score=404.89  Aligned_cols=358  Identities=16%  Similarity=0.154  Sum_probs=292.9

Q ss_pred             CCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHh
Q 012647           61 GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLF  140 (459)
Q Consensus        61 ~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~  140 (459)
                      ++...+++.+..+.....   ..++|+|+.|.|    ..++ ++.+.+++.+.+..+ ..+|++..|.++||+++++++.
T Consensus        35 ~~~~~~~~~~~~~~~~~~---~~~~i~l~~G~P----~~~~-~~~~~~~~~~~~~~~-~~~Y~~~~G~~~Lr~aia~~~~  105 (413)
T PLN00175         35 RLEKFKTTIFTQMSSLAI---KHGAINLGQGFP----NFDG-PDFVKEAAIQAIRDG-KNQYARGFGVPELNSAIAERFK  105 (413)
T ss_pred             HhhcCCCCHHHHHHHHhh---cCCeEecCCCCC----CCCC-CHHHHHHHHHHHhcC-CCCcCCCCCCHHHHHHHHHHHH
Confidence            344445555555444332   358999999999    4443 788899998888654 3789999999999999999998


Q ss_pred             cCCCCccccC-ceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHH
Q 012647          141 GADNSVLKEQ-RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGM  219 (459)
Q Consensus       141 ~~~~~~~~~~-~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l  219 (459)
                      ..++..++++ +|++  |+|+++++.++  +...+.|||+|++++|+|..|...++..|++++.+|+++ +++.+|++.+
T Consensus       106 ~~~g~~~~~~~~I~v--t~G~~~al~~~--~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~~l  180 (413)
T PLN00175        106 KDTGLVVDPEKEVTV--TSGCTEAIAAT--ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRP-PDFAVPEDEL  180 (413)
T ss_pred             HHhCCCCCCCCCEEE--eCCHHHHHHHH--HHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCc-ccCCCCHHHH
Confidence            8888888887 7999  99999999988  444578999999999999999999999999999999963 3488999999


Q ss_pred             HHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012647          220 IADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (459)
Q Consensus       220 ~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~  299 (459)
                      ++.+.+   +++++++++||||||.+++.+++++|+++|++||++||+||+|.++.+++   +..++..+....++++++
T Consensus       181 ~~~~~~---~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~---~~~s~~~~~~~~~~vi~i  254 (413)
T PLN00175        181 KAAFTS---KTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEG---DHISMASLPGMYERTVTM  254 (413)
T ss_pred             HHhcCc---CceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCC---cccChhhCCCCcCcEEEE
Confidence            999875   67888899999999999999999999999999999999999999998753   222333333334689999


Q ss_pred             EcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012647          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV  379 (459)
Q Consensus       300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~  379 (459)
                      +||||.|+++|||+||+++   ++++++.+..    .......+++.+.|.++..+|+++      ..++++.++.|+++
T Consensus       255 ~SfSK~~~~~G~RiG~~v~---~~~l~~~l~~----~~~~~~~~~s~~~Q~a~~~~l~~~------~~~~~~~~~~~~~~  321 (413)
T PLN00175        255 NSLGKTFSLTGWKIGWAIA---PPHLTWGVRQ----AHSFLTFATATPMQWAAVAALRAP------ESYYEELKRDYSAK  321 (413)
T ss_pred             ecchhhccCcchheeeeEe---CHHHHHHHHH----HHhhccCCCCHHHHHHHHHHHhCC------HHHHHHHHHHHHHH
Confidence            9999999999999999976   8875554433    333334477888999999998765      23478899999999


Q ss_pred             HHHHHHHHhhccCCCCCcccccCCcceeeecCC------C-HHHHHHHHhcccEEEcCC---------C----cEEEccC
Q 012647          380 RQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL------N-KAQSDNMTNKWHVYMTKD---------G----RISLAGL  439 (459)
Q Consensus       380 ~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l------~-~~~~~~ll~~~gI~v~~g---------g----Ris~~~~  439 (459)
                      ++.+.+.|+ +.|    +.+..|+||+|+|+.+      + .++++.|++++||.+.||         +    ||+|+. 
T Consensus       322 ~~~l~~~L~-~~g----~~~~~p~g~~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~-  395 (413)
T PLN00175        322 KDILVEGLK-EVG----FKVYPSSGTYFVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCK-  395 (413)
T ss_pred             HHHHHHHHH-HCC----CeecCCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcC-
Confidence            999999999 876    5778899999999854      2 366788888889999986         1    999997 


Q ss_pred             ChhhHHHHHHHHHHHHhh
Q 012647          440 SLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       440 ~~e~i~~~~~~l~~~~~~  457 (459)
                      +++++++++++|.+.+++
T Consensus       396 ~~e~l~~~~~rL~~~~~~  413 (413)
T PLN00175        396 DEETLRAAVERMKTKLKR  413 (413)
T ss_pred             CHHHHHHHHHHHHHHHhC
Confidence            899999999999998864

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=100.00  E-value=7e-51  Score=380.20  Aligned_cols=365  Identities=15%  Similarity=0.098  Sum_probs=293.2

Q ss_pred             ccCCCCCCCCCccchhHHHhhhCCCCCcee-ecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHH
Q 012647           58 RFEGVTMAPPDPILGVSEAFKADTDEKKLN-LGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTA  136 (459)
Q Consensus        58 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~-l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia  136 (459)
                      +.+++....++..-++....-+   ....+ |+.|.|    ..|+ |+.|.++++++......++|++..|.++|+++++
T Consensus         8 ~~~~l~~~~~~vw~e~~~la~e---~~~~~~LgqGfp----~~~~-P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~   79 (420)
T KOG0257|consen    8 RNRNLSTSKPYVWTEINRLAAE---HKVPNPLGQGFP----DFPP-PKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALA   79 (420)
T ss_pred             ccccccccCCcHHHHHHHHHHh---cCCCCcccCCCC----CCCC-cHHHHHHHHHHhccchhccccccCCchHHHHHHH
Confidence            3445555555443333332221   12334 999998    5554 8999999999987765699999999999999999


Q ss_pred             HHHhcCCCCcccc-CceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeee------cC
Q 012647          137 ELLFGADNSVLKE-QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY------DP  209 (459)
Q Consensus       137 ~~l~~~~~~~~~~-~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~------~~  209 (459)
                      +.+...+|..+.+ ++|++  |.|+.+++..+  ++..+++||+|+|.+|.|..|...++.+|++++.+|..      ..
T Consensus        80 k~~se~~~~~~~~~~eVlV--T~GA~~ai~~~--~~~l~~~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s  155 (420)
T KOG0257|consen   80 KAYSEFYGGLLDPDDEVLV--TAGANEAISSA--LLGLLNPGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSS  155 (420)
T ss_pred             HHHHHHhccccCCcccEEE--ecCchHHHHHH--HHHHcCCCCEEEEecCcchhhhhHHhhcCCcceeeccccccccccC
Confidence            9988766665555 56999  99999999987  67779999999999999999999999999999999986      45


Q ss_pred             CCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH
Q 012647          210 KTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF  289 (459)
Q Consensus       210 ~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~  289 (459)
                      .+|.+|++.++.++++   +|++|++|+||||||.++|+++|++|+++|++||+++|+||+|..+.+++  .++..+..+
T Consensus       156 ~~~~~D~~~le~~~t~---kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~--~~h~r~asl  230 (420)
T KOG0257|consen  156 SDWTLDPEELESKITE---KTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDG--NKHIRIASL  230 (420)
T ss_pred             ccccCChHHHHhhccC---CccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCC--CcceeeecC
Confidence            6899999999999997   89999999999999999999999999999999999999999999999875  224455555


Q ss_pred             HhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHH--HHHH
Q 012647          290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFD--EWKA  367 (459)
Q Consensus       290 ~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~--~~~~  367 (459)
                      -+..++++.++||||+||++|||+||+++   ++.    +.+.+..+++.....+++..|.+.+..+..+.-..  .-..
T Consensus       231 Pgm~ertitvgS~gKtf~~TGWrlGW~ig---p~~----L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y  303 (420)
T KOG0257|consen  231 PGMYERTITVGSFGKTFGVTGWRLGWAIG---PKH----LYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSY  303 (420)
T ss_pred             CchhheEEEeccccceeeeeeeeeeeeec---hHH----hhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchh
Confidence            55667999999999999999999999966   877    66666666666666777777777766554332100  0002


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCC-----------------HHHHHHHHhcccEEEcC
Q 012647          368 EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN-----------------KAQSDNMTNKWHVYMTK  430 (459)
Q Consensus       368 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~-----------------~~~~~~ll~~~gI~v~~  430 (459)
                      .+.++.+.|+++|+.|.+.|. ++|    +++..|+|++|+|++.+                 ..++..++++.|+.+.|
T Consensus       304 ~~~~~~~~y~~krdil~k~L~-~lg----~~v~~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP  378 (420)
T KOG0257|consen  304 FITELVKEYKEKRDILAKALE-ELG----LKVTGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIP  378 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hcC----CccccCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeC
Confidence            246689999999999999999 998    68999999999998653                 23467899999999988


Q ss_pred             CC---------------cEEEccCChhhHHHHHHHHH
Q 012647          431 DG---------------RISLAGLSLAKCEYLADAII  452 (459)
Q Consensus       431 gg---------------Ris~~~~~~e~i~~~~~~l~  452 (459)
                      +.               |+++.. +++.++.+++.++
T Consensus       379 ~saF~s~~~~~~~~~~~r~~~~k-~~~~L~~a~e~l~  414 (420)
T KOG0257|consen  379 PSAFGSREHIKVAERLVRFCFCK-ADETLRKAIERLK  414 (420)
T ss_pred             chhcCCchhhHHHHHHHHHHHHh-hHHHHHHHHHHHh
Confidence            72               778877 7888888888887

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=100.00  E-value=1.6e-49  Score=395.69  Aligned_cols=342  Identities=14%  Similarity=0.122  Sum_probs=271.8

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccC-ceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~gg  160 (459)
                      +.++|+|+.|++    ..++ ++.+.+++.+.+......+|++..|.++||+++|+++...+|..++++ +|++  |+|+
T Consensus        29 ~~~~i~l~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~i--t~Gs  101 (388)
T PRK07366         29 GKELIDLSLGSS----DLPA-PAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLP--LIGS  101 (388)
T ss_pred             CCCeEEeCCCCC----CCCC-CHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEE--CCCc
Confidence            457999999987    4444 788899988877544347799999999999999999988888888898 6999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      ++++.++.  ...+.+||+|++++|+|..|...++..|++++.+|+++++++.+|++.+++.+.+   +++++++|+|||
T Consensus       102 ~~al~~~~--~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~---~~k~i~l~~p~N  176 (388)
T PRK07366        102 QEGTAHLP--LAVLNPGDFALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLA---QARLMVLSYPHN  176 (388)
T ss_pred             HHHHHHHH--HHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcc---cceEEEEeCCCC
Confidence            99999983  3346799999999999999999999999999999997555678899999887764   577888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      |||.+++.+++++|+++|++||++||+||+|.++.+++.. ...++..+.....++++++||||.||+||+|+||+++  
T Consensus       177 PTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~-~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~--  253 (388)
T PRK07366        177 PTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEV-EPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIG--  253 (388)
T ss_pred             CCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCC-CCCChhhCCCCcccEEEEeecccccCCcchhheehcC--
Confidence            9999999999999999999999999999999999875311 1223333222335789999999999999999999965  


Q ss_pred             CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012647          321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  400 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  400 (459)
                       ++++++.+.+..    .....+.+...+.++...|.+.      .+++++.++.++++++.+.+.|+ ++|    +.+.
T Consensus       254 -~~~li~~l~~~~----~~~~~~~~~~~~~~a~~~l~~~------~~~l~~~~~~~~~~r~~l~~~L~-~~~----~~~~  317 (388)
T PRK07366        254 -NAQLIQALRQVK----AVVDFNQYRGILNGAIAALTGP------QATVQQTVQIFRQRRDAFINALH-QIG----WPVP  317 (388)
T ss_pred             -CHHHHHHHHHHH----hhcccCCCHHHHHHHHHHHhCc------HHHHHHHHHHHHHHHHHHHHHHH-HCC----Cccc
Confidence             888555544432    2222233333333343344321      24578899999999999999999 876    5677


Q ss_pred             cCCcceeeecCCC-------HHHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHHHH
Q 012647          401 LRQIGMFSFTGLN-------KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       401 ~~~~g~f~~~~l~-------~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~~~  455 (459)
                      .|++|+|+|+.+.       .++++.+++++||.+.||        +  ||+++. +++++++++++|.+++
T Consensus       318 ~p~~g~f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~~l~rl~~~l  388 (388)
T PRK07366        318 LPEATMYVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVH-DPDILEEAVERIAAFL  388 (388)
T ss_pred             CCCeeEEEEEECCcccCCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecC-CHHHHHHHHHHHHHhC
Confidence            8899999998652       345678877789999997        1  999987 8899999999998753

>PTZ00377 alanine aminotransferase; Provisional

Probab=100.00  E-value=3e-49  Score=402.82  Aligned_cols=361  Identities=17%  Similarity=0.127  Sum_probs=282.2

Q ss_pred             CCCceeecccccCC---------------CCC---------CccCcHHHHHHHHHHhhcC--CCCCCCCCcccHHHHHHH
Q 012647           82 DEKKLNLGVGAYRT---------------EEL---------QPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVT  135 (459)
Q Consensus        82 ~~~~i~l~~g~~~~---------------~~~---------~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~ai  135 (459)
                      ..++|+|++|+|-+               ...         ....|..+.+++.+++...  ....|++..|.++||++|
T Consensus        45 ~~~vi~~~~G~p~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~ai  124 (481)
T PTZ00377         45 FDSIVYCNIGNPQALGQKPLTFYRQVLSLVEYPFLLEDPSVSSLFPADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAV  124 (481)
T ss_pred             cceeEEcCCCChhhcCCCCchHHHHHHHHccChhhhcCccccccCCHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHH
Confidence            36899999999921               111         0012557777777665431  236799999999999999


Q ss_pred             HHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHh-CCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCC
Q 012647          136 AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY-FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGL  214 (459)
Q Consensus       136 a~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~  214 (459)
                      |+++...+|..+++++|++  |+|+++++.++..  ..+ .+||+|++++|+|+.|...++.+|++++.+|++++++|++
T Consensus       125 a~~~~~~~g~~~~~~~I~i--t~Ga~~al~~~~~--~l~~~~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~  200 (481)
T PTZ00377        125 AAFIERRDGVPKDPSDIFL--TDGASSGIKLLLQ--LLIGDPSDGVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSL  200 (481)
T ss_pred             HHHHHHhcCCCCChhhEEE--cCCHHHHHHHHHH--HhccCCCCEEEECCCCchhHHHHHHHcCCEEEEEEeccccCCCC
Confidence            9999888888899999999  9999999999843  346 5999999999999999999999999999999976667899


Q ss_pred             CHHHHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh
Q 012647          215 DFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT  291 (459)
Q Consensus       215 d~e~l~~~i~~~---~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~  291 (459)
                      |++.+++++++.   ..++++++++|||||||.++|.+++++|+++|++||++||+||+|.++.|++. ....++..+..
T Consensus       201 d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~-~~~~s~~~~~~  279 (481)
T PTZ00377        201 DQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGE-KPFISFRKVLL  279 (481)
T ss_pred             CHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCC-CCcccHHHHHH
Confidence            999999998741   12577777789999999999999999999999999999999999999987421 12223322211


Q ss_pred             ----c---CCeEEEEEcCCcC-cccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChh---
Q 012647          292 ----R---GMELLVAQSYSKN-LGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPA---  360 (459)
Q Consensus       292 ----~---~~~~i~~~S~SK~-~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~---  360 (459)
                          .   ..++++++||||. +++||||+||+++...++++++.+.    ..+.. ..+++.++|.++..+|+++.   
T Consensus       280 ~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~----~~~~~-~~~~~~~~Q~a~~~~l~~~~~~~  354 (481)
T PTZ00377        280 ELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIY----KLASI-NLCSNVVGQLMTGLMCNPPREGD  354 (481)
T ss_pred             hhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHH----HHhhe-ecCCChHHHHHHHHHhCCCCCCc
Confidence                1   1368999999997 6999999999953224777444443    33322 33678889999999987532   


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCC-----------------HHHHHHHHh
Q 012647          361 -LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN-----------------KAQSDNMTN  422 (459)
Q Consensus       361 -~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~-----------------~~~~~~ll~  422 (459)
                       ..+.|.+++++.++.|+++++.+.+.|+ +++   ++.+..|+||||+|+.+.                 .+++..+++
T Consensus       355 ~~~~~~~~~~~~~~~~~~~rr~~l~~~L~-~~~---g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~  430 (481)
T PTZ00377        355 ASYPLYKRERDAIFTSLKRRAELLTDELN-KIE---GVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLE  430 (481)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC---CcEeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHH
Confidence             2334667777888889999999999999 772   278889999999996431                 234668888


Q ss_pred             cccEEEcCCC-----------cEEEccCChhhHHHHHHHHHHHHhh
Q 012647          423 KWHVYMTKDG-----------RISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       423 ~~gI~v~~gg-----------Ris~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                      ++||.++||.           ||||+. +++++++++++|.+++++
T Consensus       431 ~~gV~v~pG~~F~~~~~~~~~Rls~~~-~~e~l~~~l~rl~~~~~~  475 (481)
T PTZ00377        431 STGIVVVPGSGFGQKPGTYHFRITILP-PEEQIEEMVKKIKEFHES  475 (481)
T ss_pred             HcCEEEeCCcccCCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHH
Confidence            8899999972           999994 888999999999998865

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=100.00  E-value=5.9e-49  Score=403.88  Aligned_cols=375  Identities=18%  Similarity=0.158  Sum_probs=289.4

Q ss_pred             cCCCCCCCCCccchhHHHhh--hCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHH
Q 012647           59 FEGVTMAPPDPILGVSEAFK--ADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTA  136 (459)
Q Consensus        59 ~~~~~~~~~~~i~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia  136 (459)
                      ++++...+.+.+..+...++  ...+.++|+|+.|+| +..++++ |+.+.+++.+.+..  ..+|++..|.++||++||
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~G~p-~~~~~~~-p~~~~~~~~~~~~~--~~~Y~~~~G~~~lReaia  195 (517)
T PRK13355        120 SHKLDNVLYDVRGPVVDEANRMEAAGTHILKLNIGNP-APFGFRT-PDEVVYDMAQQLTD--TEGYSDSKGLFSARKAIM  195 (517)
T ss_pred             hHHhhccCccHHHHHHHHHHHHHHcCCCeEEecCcCC-CcCCCCC-CHHHHHHHHHHhhc--CCCCCCCcChHHHHHHHH
Confidence            44444444444433333332  123568999999998 4444443 78888888887753  367999999999999999


Q ss_pred             HHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCH
Q 012647          137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF  216 (459)
Q Consensus       137 ~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~  216 (459)
                      +++...++..+++++|++  |+|++++++++.  ...+.+||+|++++|+|+.|...++..|++++.++++++++|.+|+
T Consensus       196 ~~~~~~~~~~~~~~~I~i--t~G~~eal~~~~--~~l~~~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~  271 (517)
T PRK13355        196 QYAQLKGLPNVDVDDIYT--GNGVSELINLSM--SALLDDGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDI  271 (517)
T ss_pred             HHHHhcCCCCCChhHEEE--eCcHHHHHHHHH--HHhCCCCCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCH
Confidence            998777666788999999  999999999984  4447899999999999999999999999999999987666789999


Q ss_pred             HHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeE
Q 012647          217 EGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL  296 (459)
Q Consensus       217 e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~  296 (459)
                      +++++++++   ++++++++|||||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+. ....+
T Consensus       272 ~~l~~~~~~---~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~--~~~s~~~~~-~~~~v  345 (517)
T PRK13355        272 DDIRSKITS---RTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGL--EHTSIASLA-PDLFC  345 (517)
T ss_pred             HHHHHhcCc---CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCC--CcccHHHhC-CCCeE
Confidence            999998875   788888999999999999999999999999999999999999999987641  223433332 22357


Q ss_pred             EEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012647          297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI  376 (459)
Q Consensus       297 i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~  376 (459)
                      ++++||||.|+++|||+||+++ .++++..+.+...+.... ....+++.++|.++..+|.+....   .+++++.+ ++
T Consensus       346 i~~~S~SK~~~~~G~RiG~~i~-~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~a~~~aL~~~~~~---~~~~~~~~-~~  419 (517)
T PRK13355        346 VTFSGLSKSHMIAGYRIGWMIL-SGNKRIAKDYIEGLNMLA-NMRLCSNVPAQSIVQTALGGHQSV---KDYLVPGG-RV  419 (517)
T ss_pred             EEEecchhhccCcccceEEEEe-eCchhhHHHHHHHHHHHh-cCcCCcChHHHHHHHHHhcCCccH---HHHHHHHH-HH
Confidence            7889999999999999999964 235554445555444332 222367788999998888754222   23344443 34


Q ss_pred             HHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC---------CHHHHHHHHhcccEEEcCCC----------cEEEc
Q 012647          377 KNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---------NKAQSDNMTNKWHVYMTKDG----------RISLA  437 (459)
Q Consensus       377 ~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l---------~~~~~~~ll~~~gI~v~~gg----------Ris~~  437 (459)
                      .++++++.+.|+ +++   ++++..|+|+||+|+.+         +.+++.++++++||.++||.          ||||+
T Consensus       420 ~~~r~~l~~~L~-~~~---g~~~~~p~g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~  495 (517)
T PRK13355        420 YEQRELVYNALN-AIP---GISAVKPKAAFYIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYL  495 (517)
T ss_pred             HHHHHHHHHHHh-cCC---CcccCCCCeeeEEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeC
Confidence            456899999999 872   26889999999999754         23567788888899999972          99997


Q ss_pred             cCChhhHHHHHHHHHHHHhhc
Q 012647          438 GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       438 ~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      . +++++++++++|.+++.+.
T Consensus       496 ~-~~~~l~~a~~rl~~~~~~~  515 (517)
T PRK13355        496 P-RLEDLEDAMDRLADFFSYY  515 (517)
T ss_pred             C-CHHHHHHHHHHHHHHHHHh
Confidence            5 8999999999999998753

>PRK07681 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2.5e-49  Score=395.38  Aligned_cols=338  Identities=17%  Similarity=0.176  Sum_probs=276.6

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCcccc-CceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~gg  160 (459)
                      ++++++|+.|.|    ..++ ++.+.+++.+.+.....+.|. ..|.++||++||+++...+|..+++ ++|++  |+|+
T Consensus        31 ~~~~i~l~~g~p----~~~~-~~~~~~~~~~~~~~~~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~I~i--t~G~  102 (399)
T PRK07681         31 GHKMIDLSIGNP----DMPP-ADFVREEMVHTANQKESYGYT-LSGIQEFHEAVTEYYNNTHNVILNADKEVLL--LMGS  102 (399)
T ss_pred             CCCeEEeCCCCC----CCCC-CHHHHHHHHHHHhccccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEE--CCCc
Confidence            468999999987    3333 778888888877543335564 5899999999999998888888888 89999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      ++++.++.  ...+.+||+|++++|+|+.|...++.+|++++++|+++++++.+|++++++++.+   +++++++++|||
T Consensus       103 ~~al~~~~--~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~---~~k~v~l~~P~N  177 (399)
T PRK07681        103 QDGLVHLP--MVYANPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIAD---KAKMMILNFPGN  177 (399)
T ss_pred             HHHHHHHH--HHhCCCCCEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhccc---cceEEEEeCCCC
Confidence            99999984  3447799999999999999999999999999999996555678999999998865   678888999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      |||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+....+++++++||||.||++|+|+||+++  
T Consensus       178 PTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~--  253 (399)
T PRK07681        178 PVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGN--KPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIG--  253 (399)
T ss_pred             CcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCC--CCCChhhCCCCcccEEEEeecccccCCccceeEEEec--
Confidence            999999999999999999999999999999999987532  1222222222335799999999999999999999965  


Q ss_pred             CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012647          321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  400 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  400 (459)
                       ++++++++..    .......+++.+.|.++..+|+++.      +++++.++.++++++.+.+.|+ +.|    +++.
T Consensus       254 -~~~l~~~~~~----~~~~~~~~~s~~~q~~~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~  317 (399)
T PRK07681        254 -NEEIVRALTQ----FKSNTDYGVFLPIQKAACAALRNGA------AFCEKNRGIYQERRDTLVDGFR-TFG----WNVD  317 (399)
T ss_pred             -CHHHHHHHHH----HHhhcccCCCHHHHHHHHHHHhCcH------HHHHHHHHHHHHHHHHHHHHHH-HCC----Cccc
Confidence             7885555443    3323333678889999999988752      3467788899999999999999 876    5777


Q ss_pred             cCCcceeeecCC-----CHHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHH
Q 012647          401 LRQIGMFSFTGL-----NKAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIID  453 (459)
Q Consensus       401 ~~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~  453 (459)
                      .|++|+|+|+.+     +.++++++++++||.+.||.          ||+++. +++++++++++|++
T Consensus       318 ~p~~g~f~~~~l~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~~~~l~~l~~  384 (399)
T PRK07681        318 KPAGSMFVWAEIPKGWTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQ-DEEVLQQAVENIRN  384 (399)
T ss_pred             CCCeeeEEEEECCCCCCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecC-CHHHHHHHHHHHHH
Confidence            789999999865     24567888887899999862          999986 78999999999987

>PLN02187 rooty/superroot1

Probab=100.00  E-value=7.5e-49  Score=396.33  Aligned_cols=366  Identities=14%  Similarity=0.120  Sum_probs=286.2

Q ss_pred             ccchhHHHh----hhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCC
Q 012647           69 PILGVSEAF----KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADN  144 (459)
Q Consensus        69 ~i~~~~~~~----~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~  144 (459)
                      +|+.+...+    .....+++|+|+.|+| +....+..++.+.+++.+.+..+....|.+..|.++||+++|+++...++
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~vi~l~~Gdp-~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~  126 (462)
T PLN02187         48 TLRGVIYMLFDNCGKDVNKTILPLGHGDP-SVYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLP  126 (462)
T ss_pred             hHhhHHHHHHhhcccCCCCCeEECCCCCC-CCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcC
Confidence            455554433    3334568999999987 32221224688889888887655457899999999999999999988788


Q ss_pred             CccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHH
Q 012647          145 SVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIK  224 (459)
Q Consensus       145 ~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~  224 (459)
                      ..+++++|++  |+|+++++.++..  ..+.|||+|++++|+|+.|...++..|++++.+++.+++++++|++.++++++
T Consensus       127 ~~~~~~~I~i--t~G~~~al~~~~~--~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~  202 (462)
T PLN02187        127 HKLTPEDIFL--TAGCNQGIEIVFE--SLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIAD  202 (462)
T ss_pred             CCCCcccEEE--eCCHHHHHHHHHH--HhcCCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcC
Confidence            8889999999  9999999999843  34679999999999999999999999999999998655679999999999886


Q ss_pred             cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCc
Q 012647          225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK  304 (459)
Q Consensus       225 ~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  304 (459)
                      +   ++++++++|||||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+ ....++++++||||
T Consensus       203 ~---~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~--~~~s~~~~-~~~~~vi~l~SfSK  276 (462)
T PLN02187        203 E---NTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDN--PFVSMGKF-ASIVPVLTLAGISK  276 (462)
T ss_pred             C---CcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCC--CceeHHHh-ccCCcEEEEecchh
Confidence            5   678888999999999999999999999999999999999999999987542  22234333 22346999999999


Q ss_pred             CcccCCCCcceEEEEeCChhHHHHHHHHHHhhcccc--ccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Q 012647          305 NLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPM--YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQK  382 (459)
Q Consensus       305 ~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (459)
                      .|++||||+||+++  .+++..-.+.+.+.......  ..+++.++|.++..+|++..     .+++++.++.++++++.
T Consensus       277 ~f~~pGlRiG~~v~--~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~-----~~~l~~~~~~l~~~r~~  349 (462)
T PLN02187        277 GWVVPGWKIGWIAL--NDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKAD-----KNFFAKKNKILKHNVDL  349 (462)
T ss_pred             hcCCccceeEEEEe--cCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCc-----HHHHHHHHHHHHHHHHH
Confidence            99999999999953  33332111222232222222  22457889999988887521     24578889999999999


Q ss_pred             HHHHHhhccCCCCCcc-cccCCcceeeecCC---------CH-HHHHHHHhcccEEEcCCC--------cEEEccCChhh
Q 012647          383 LFDSLSAKDKSGKDWS-FILRQIGMFSFTGL---------NK-AQSDNMTNKWHVYMTKDG--------RISLAGLSLAK  443 (459)
Q Consensus       383 l~~~L~~~~g~~~~~~-~~~~~~g~f~~~~l---------~~-~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e~  443 (459)
                      +.+.|+ +++.   .. +..|++|+|+|+.+         +. +++.++++++||.+.||.        ||+|+. ++++
T Consensus       350 l~~~L~-~~~~---~~~~~~P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~~~-~~e~  424 (462)
T PLN02187        350 VCDRLK-DIPC---VVCPKKPESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRITIGV-EAHM  424 (462)
T ss_pred             HHHHHh-hCCC---CcCCCCCCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECccccCCCCeEEEEeCC-CHHH
Confidence            999999 7741   22 34688999999854         22 557788788899999982        999998 7899


Q ss_pred             HHHHHHHHHHHHhh
Q 012647          444 CEYLADAIIDSYHN  457 (459)
Q Consensus       444 i~~~~~~l~~~~~~  457 (459)
                      +++++++|.+++++
T Consensus       425 l~~al~rL~~~l~~  438 (462)
T PLN02187        425 LEDALERLKGFCTR  438 (462)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999865

>PRK06855 aminotransferase; Validated

Probab=100.00  E-value=1e-48  Score=393.74  Aligned_cols=356  Identities=13%  Similarity=0.099  Sum_probs=281.8

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +.++++++.|+| +..++++ |+.+.+++.+.+......+|++..|.++||+++++++...+|..+++++|++  |+|++
T Consensus        31 g~~~~~~~~G~p-~~~~~~~-p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~i--t~G~~  106 (433)
T PRK06855         31 GVKITWENIGDP-IAKGEKI-PDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIF--FNGLG  106 (433)
T ss_pred             cccccccccCCC-cccCCCC-CHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEE--cCcHH
Confidence            457899999998 3323343 7888888888775444478999999999999999999888888899999999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh-hhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~-~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      +++.++.   ..+.+||.|++++|+|+.|.... ...|++++.+|+++++++++|+++++++++.. ++++++++++|||
T Consensus       107 ~al~~~~---~l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~-~~~~~i~l~~P~N  182 (433)
T PRK06855        107 DAIAKIY---GLLRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYN-PSIAGILLINPDN  182 (433)
T ss_pred             HHHHHHH---HhcCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcC-CCceEEEEECCCC
Confidence            9999873   34679999999999999987543 45688999999865567899999999999742 2567788899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      |||.++|.+++++|+++|++||++||+||+|.++.+++.  ...++..+.. ..++++++||||.|++||||+||+++..
T Consensus       183 PTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~--~~~sl~~~~~-~~~~I~~~S~SK~~~~pGlRiG~ii~p~  259 (433)
T PRK06855        183 PTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGK--KTVPLSEVIG-DVPGIALKGISKELPWPGSRCGWIEVYN  259 (433)
T ss_pred             CCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCCCHHHHcC-cCCeEEEecCccccCCCcceEEEEEEeC
Confidence            999999999999999999999999999999999987531  2234434322 2357999999999999999999995410


Q ss_pred             C-ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccc
Q 012647          321 S-SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF  399 (459)
Q Consensus       321 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~  399 (459)
                      . ++..+..+.+.+...... ..+++.+.|.++..+|+++.+    .+++++.++.|+++++.+.+.|+ ++.  + +.+
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Q~a~~~~l~~~~~----~~~~~~~~~~~~~r~~~~~~~L~-~~~--~-~~~  330 (433)
T PRK06855        260 ADKDEVFKKYINSILNAKMI-EVCSTTLPQMAIPRIMSHPEY----KNYLKERNKRYEKRSNIAYEKLK-DVP--G-LKV  330 (433)
T ss_pred             CchhhHHHHHHHHHHHhhcc-ccCCChHHHHHHHHhhcCCcH----HHHHHHHHHHHHHHHHHHHHHHh-cCC--C-eec
Confidence            0 112222333333332222 335778899999999987654    35678899999999999999998 762  1 677


Q ss_pred             ccCCcceeeecCCC--------------------------------HHHHHHHHhcccEEEcCCC---------cEEEcc
Q 012647          400 ILRQIGMFSFTGLN--------------------------------KAQSDNMTNKWHVYMTKDG---------RISLAG  438 (459)
Q Consensus       400 ~~~~~g~f~~~~l~--------------------------------~~~~~~ll~~~gI~v~~gg---------Ris~~~  438 (459)
                      ..|+||||+|+.+.                                .+++..+++++||.+.||.         ||||+.
T Consensus       331 ~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls~~~  410 (433)
T PRK06855        331 NRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELNGFRVTLLE  410 (433)
T ss_pred             cCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCCceEEEECC
Confidence            88999999998663                                2345677778899999982         999998


Q ss_pred             CChhhHHHHHHHHHHHHhh
Q 012647          439 LSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       439 ~~~e~i~~~~~~l~~~~~~  457 (459)
                      .+++++++++++|.+++++
T Consensus       411 ~~~~~i~~~~~~l~~~~~~  429 (433)
T PRK06855        411 RDEEKFEWIYQTLAEKIEE  429 (433)
T ss_pred             CcHHHHHHHHHHHHHHHHH
Confidence            7899999999999999875

>PRK06207 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.2e-48  Score=390.40  Aligned_cols=345  Identities=17%  Similarity=0.166  Sum_probs=277.9

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCcccc-CceEEeecccch
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGLSGT  161 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~ggt  161 (459)
                      .+.|+|+.|.|    .....++.+.+++.+.+.......|++..|.++||++|++++...+|..+++ ++|++  |+|++
T Consensus        39 ~~~i~l~~g~~----~~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~i--t~Ga~  112 (405)
T PRK06207         39 GRPVDFSHGDV----DAHEPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELII--TPGTQ  112 (405)
T ss_pred             CCceecCCcCC----CCCCCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEE--eCCcH
Confidence            47899999998    2212367888888887755434679989999999999999998877887888 89999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeee---cCCCCCCCHHHHHHHHHcCCCCcEEEEeCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY---DPKTVGLDFEGMIADIKAAPGGSFILLHGCA  238 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~---~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p  238 (459)
                      +++.++  +...+.+||+|++++|+|+.|...++.+|++++.++++   .++++++|++.+++++++   +++++++++|
T Consensus       113 ~al~~~--~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~---~~k~v~l~~P  187 (405)
T PRK06207        113 GALFLA--VAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKA---GVRVFLFSNP  187 (405)
T ss_pred             HHHHHH--HHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhh---cCeEEEECCC
Confidence            999998  34447799999999999999999999999999999985   234689999999999876   6778888999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012647          239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (459)
Q Consensus       239 ~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (459)
                      |||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+....+++++++||||.|++||+|+||+++
T Consensus       188 ~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~--~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~  265 (405)
T PRK06207        188 NNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGT--SYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFG  265 (405)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCCchhcCCCCcCcEEEEecchhhccCcccceEEEEc
Confidence            99999999999999999999999999999999999987532  1222322222356899999999999999999999966


Q ss_pred             EeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcc
Q 012647          319 VCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWS  398 (459)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~  398 (459)
                         +++.++++...    ......+.+.+.|.++..+|+++.      .++++..+.++++++.+.+.|+ +++   +++
T Consensus       266 ---~~~l~~~~~~~----~~~~~~~~~~~~q~a~~~~l~~~~------~~~~~~~~~~~~~r~~l~~~L~-~~~---~~~  328 (405)
T PRK06207        266 ---SPAIIDRMEKL----QAIVSLRAAGYSQAVLRTWFSEPD------GWMKDRIARHQAIRDDLLRVLR-GVE---GVF  328 (405)
T ss_pred             ---CHHHHHHHHHH----HhHhccCCCHHHHHHHHHHHhCcH------HHHHHHHHHHHHHHHHHHHHHh-cCC---Cce
Confidence               78855554433    223334667788999988887531      1245566677888999999998 762   167


Q ss_pred             cccCCcceeeecCCC------HHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          399 FILRQIGMFSFTGLN------KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       399 ~~~~~~g~f~~~~l~------~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      +..|++|+|+|+.+.      .++++.+++++||.+.||.          ||||+. +++++++++++|.+++++.
T Consensus       329 ~~~p~gg~fl~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~-~~~~l~~al~rl~~~l~~~  403 (405)
T PRK06207        329 VRAPQAGSYLFPRLPRLAVSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQ-DHAAAVAAAERIAQLIERY  403 (405)
T ss_pred             ecCCCeeEEEEEeCcccCCCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHh
Confidence            778999999998753      3456777767899999972          999998 8899999999999998765

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=100.00  E-value=2.5e-48  Score=389.99  Aligned_cols=352  Identities=16%  Similarity=0.167  Sum_probs=284.7

Q ss_pred             CCCceeecccccCCCC-CCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEE-LQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~-~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      +.++|+|+.|+| +.. .++ .++.+.+++.+.+..+....|++..|.+++|+++++++...++..+++++|++  |+|+
T Consensus        51 ~~~~i~l~~G~P-~~~~~~~-~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~i--t~G~  126 (430)
T PLN00145         51 PRPVLPLGHGDP-SAFPCFR-TAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYL--TAGC  126 (430)
T ss_pred             CCCeeeCCCCCC-CCCCCCC-CCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEE--eCCH
Confidence            458999999998 221 133 37889999998886654468999999999999999999888888899999999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      +++++++...  .+.+||+|++++|+|+.|.......|++++.+++.++++|.+|++.+++.+++   +++++++++|||
T Consensus       127 ~~al~l~~~~--l~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~i~~P~N  201 (430)
T PLN00145        127 AQAIEIIMSV--LAQPGANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADE---NTVAMVIINPNN  201 (430)
T ss_pred             HHHHHHHHHH--hcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCc---CceEEEEeCCCC
Confidence            9999998443  36799999999999999999999999999999986566789999999998875   788889999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      |||.+++.+++++|+++|+++|++||+||+|.++.+++.  ...++..+ ....++++++||||.|++||||+||+++ .
T Consensus       202 PtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~--~~~~~~~~-~~~~~vi~~~S~SK~~~~pG~RlG~iv~-~  277 (430)
T PLN00145        202 PCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSK--PFVPMGVF-GEVAPVLTLGSISKRWVVPGWRLGWIAT-C  277 (430)
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCC--Cccchhhh-cccCcEEEEeccccccCCCCeeEEEEEE-e
Confidence            999999999999999999999999999999999987531  22233332 3356899999999999999999999954 2


Q ss_pred             CChhHHHH--HHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcc
Q 012647          321 SSSDLAAR--VKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWS  398 (459)
Q Consensus       321 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~  398 (459)
                      .++..++.  +...+.... ....+++.+.|.++..+|.+..     .+++++.++.++++++.+.+.|+ +++   ++.
T Consensus       278 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Q~a~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~L~-~~~---g~~  347 (430)
T PLN00145        278 DPNGILKETKVVDSIRNYL-NISTDPATFVQGAIPQIIANTK-----EEFFTKTLGLLKETADICYEKIK-EIK---CIT  347 (430)
T ss_pred             cchhhhhhhHHHHHHHHHh-cccCCCCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHHHHHHHHh-cCC---CCC
Confidence            34443322  233333332 2344678889999988887521     24478889999999999999999 762   145


Q ss_pred             c-ccCCcceeeecCCC----------HHHHHHHHhcccEEEcCCC--------cEEEccCChhhHHHHHHHHHHHHhh
Q 012647          399 F-ILRQIGMFSFTGLN----------KAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       399 ~-~~~~~g~f~~~~l~----------~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                      + ..|+|++|+|++++          .+++.++++++||.+.||.        ||+|+. ++++++.++++|.+++.+
T Consensus       348 ~~~~P~ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~~-~~~~l~~al~rl~~~~~~  424 (430)
T PLN00145        348 CPHKPEGSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFAI-DPPSLEDGLERLKSFCLR  424 (430)
T ss_pred             CCcCCCeeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCC-CHHHHHHHHHHHHHHHHH
Confidence            4 47999999998652          3567889988899999982        999996 889999999999999865

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=100.00  E-value=1.4e-48  Score=390.50  Aligned_cols=363  Identities=15%  Similarity=0.130  Sum_probs=284.8

Q ss_pred             cchhHHHhhhCCCCCceeecccccCCC-CCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccc
Q 012647           70 ILGVSEAFKADTDEKKLNLGVGAYRTE-ELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLK  148 (459)
Q Consensus        70 i~~~~~~~~~~~~~~~i~l~~g~~~~~-~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~  148 (459)
                      +....+.+.++.++++|+|++|+| |. ..+++ ++.+.+++.+.+......+|.|..|.++||+++++++...+|..++
T Consensus        19 ~~~~~~~~~~~~~~~~i~l~~G~p-~~~~~~~~-p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~   96 (409)
T PLN00143         19 VKFLKENFNEDDHRLAISFGFGDP-SCFECFRT-TNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLS   96 (409)
T ss_pred             HHHHHHhcccCCCCceeeCCCCCC-CCCCCCCC-CHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCC
Confidence            334444455667789999999998 31 12454 8899999988886544467999999999999999999888888889


Q ss_pred             cCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCC
Q 012647          149 EQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG  228 (459)
Q Consensus       149 ~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~  228 (459)
                      +++|++  |+|+++++.++.  ...+.+||.|++++|+|+.|...++..|++++.+++.+++++.+|++.+++++++   
T Consensus        97 ~~~I~i--t~G~~~al~~~~--~~l~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~---  169 (409)
T PLN00143         97 PDDVYL--TLGCKHAAEIII--KVLARPEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADE---  169 (409)
T ss_pred             HhhEEE--ecChHHHHHHHH--HHHcCCCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhccc---
Confidence            999999  999999999984  4446899999999999999999999999999999986556788999999988865   


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc
Q 012647          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (459)
Q Consensus       229 ~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  308 (459)
                      ++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.+++.  ...++.. ....+++++++||||.|++
T Consensus       170 ~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~--~~~~~~~-~~~~~~vi~~~SfSK~f~~  246 (409)
T PLN00143        170 NTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSK--PFVPMGL-FASIVPVITLGSISKRWMI  246 (409)
T ss_pred             CCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCC--CCcchhh-hcccCcEEEEccchhhcCC
Confidence            677888899999999999999999999999999999999999999987531  1222322 2344589999999999999


Q ss_pred             CCCCcceEEEEeC-ChhHHHH--HHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          309 YAERIGAMNVVCS-SSDLAAR--VKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD  385 (459)
Q Consensus       309 ~G~RiG~~~~v~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  385 (459)
                      ||+|+||++  +. ++...+.  +.+.+...... ...++.+.|.++..+|.+..     ...+++.++.++++++.+.+
T Consensus       247 pGlRvG~~v--~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~  318 (409)
T PLN00143        247 PGWGLGWLV--TCDPSGLLQICEIADSIKKALNP-APFPPTFIQAAIPEILEKTT-----EDFFSKTINILRAALAFCYD  318 (409)
T ss_pred             CccceEEEE--eeCchhhhhhHHHHHHHHHHHhc-cCCCCchHHHHHHHHHhcCh-----HHHHHHHHHHHHHHHHHHHH
Confidence            999999994  43 3333221  22333332222 22346788999888887521     12356778888888899999


Q ss_pred             HHhhccCCCCCcc-cccCCcceeeecCCC----------HHHHHHHHhcccEEEcCCC--------cEEEccCChhhHHH
Q 012647          386 SLSAKDKSGKDWS-FILRQIGMFSFTGLN----------KAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEY  446 (459)
Q Consensus       386 ~L~~~~g~~~~~~-~~~~~~g~f~~~~l~----------~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e~i~~  446 (459)
                      .|+ +++.   .. ...|+||+|+|+.+.          .+++.++++++||.+.||.        ||+|+. +++++++
T Consensus       319 ~L~-~~~~---~~~~~~p~gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~~-~~~~l~~  393 (409)
T PLN00143        319 KLK-EIPC---IMCPQKAEGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFAV-EQSSLED  393 (409)
T ss_pred             HHh-cCCC---CCCCCCCCeeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEEcC-CHHHHHH
Confidence            998 7642   22 246889999998763          2456678777899999973        999997 7899999


Q ss_pred             HHHHHHHHHhh
Q 012647          447 LADAIIDSYHN  457 (459)
Q Consensus       447 ~~~~l~~~~~~  457 (459)
                      ++++|++++++
T Consensus       394 al~rl~~~l~~  404 (409)
T PLN00143        394 GLGRLKSFCGR  404 (409)
T ss_pred             HHHHHHHHHHH
Confidence            99999998865

>PRK08068 transaminase; Reviewed

Probab=100.00  E-value=9e-49  Score=390.29  Aligned_cols=340  Identities=15%  Similarity=0.156  Sum_probs=273.4

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccC-ceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~gg  160 (459)
                      ++++|+|+.|.|    ..+. ++.+.+++.+.+.......|+|..|.++||+++|+++...+|..++++ +|++  |.|+
T Consensus        31 ~~~~i~l~~~~p----~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~i--t~G~  103 (389)
T PRK08068         31 GHDVINLGQGNP----DQPT-PEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAI--LFGG  103 (389)
T ss_pred             CCCeEEecCCCC----CCCC-CHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEE--cCCc
Confidence            357899999987    3433 677888888877654446898899999999999999987778878888 7999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      ++++.++  +...+.+||+|++++|+|..|...++..|++++.+|+++++++.+|++++++.+.+   +++++++++|||
T Consensus       104 ~~~l~~~--~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~---~~~~v~l~~P~N  178 (389)
T PRK08068        104 KAGLVEL--PQCLMNPGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAE---KAKLMYLNYPNN  178 (389)
T ss_pred             HHHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhccc---cceEEEEECCCC
Confidence            9999987  44446799999999999999999999999999999996555788999999998865   678888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      |||.++|.+++++|+++|++||++||+||+|.++.+++.  ...++....+..+++++++||||.||++|+|+||+++  
T Consensus       179 PTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~--~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~--  254 (389)
T PRK08068        179 PTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQ--KPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVG--  254 (389)
T ss_pred             CCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCC--CCcChhhCCCccCCEEEEecchhccCCccceeEeEec--
Confidence            999999999999999999999999999999999887531  1122212222345789999999999999999999965  


Q ss_pred             CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012647          321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  400 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  400 (459)
                       ++++++.+...    ......+++...|.++..+|.+.      .+++++.++.++++++.+.+.|+ ++|    +.+.
T Consensus       255 -~~~l~~~l~~~----~~~~~~~~~~~~q~~~~~~l~~~------~~~~~~~~~~~~~~r~~~~~~L~-~~g----~~~~  318 (389)
T PRK08068        255 -NESVIEAINLL----QDHLFVSLFGAIQDAAIEALLSD------QSCVAELVARYESRRNAFISACR-EIG----WEVD  318 (389)
T ss_pred             -CHHHHHHHHHH----HhhccCCCChHHHHHHHHHHhCc------HHHHHHHHHHHHHHHHHHHHHHH-HCC----Cccc
Confidence             88855555433    22333455566777777666543      13467889999999999999999 887    6778


Q ss_pred             cCCcceeeecCC----C-HHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHH
Q 012647          401 LRQIGMFSFTGL----N-KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDS  454 (459)
Q Consensus       401 ~~~~g~f~~~~l----~-~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~  454 (459)
                      +++||+|+|+.+    + .++.+++++++||.+.||.          ||+++. ++++++.++++|.++
T Consensus       319 ~~~g~~~~~v~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~al~~l~~~  386 (389)
T PRK08068        319 APKGSFFAWMPVPKGYTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLT-DEERLREAVERIGKL  386 (389)
T ss_pred             CCCeeEEEEEECCCCCCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcC-CHHHHHHHHHHHHHh
Confidence            889999999855    2 3567788777899998861          999986 778888888888753

>PRK08636 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.4e-48  Score=390.41  Aligned_cols=347  Identities=13%  Similarity=0.128  Sum_probs=275.3

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccC-ceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~gg  160 (459)
                      ++++++|+.|.|    ..+. ++.+.+++.+........+|++..|.++||+++|+++...++..++++ +|++  |+|+
T Consensus        32 ~~~~~~l~~g~p----~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~i--t~G~  104 (403)
T PRK08636         32 GEDIIDFSMGNP----DGPT-PQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVA--TMGS  104 (403)
T ss_pred             CCCEEEcCCcCC----CCCC-CHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEE--CCCh
Confidence            467899999988    3332 566666666655433347899999999999999999988788888887 7999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHH----HHHHHcCCCCcEEEEeC
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGM----IADIKAAPGGSFILLHG  236 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l----~~~i~~~~~~~~~ii~~  236 (459)
                      ++++.++.  ...+.+||.|++++|+|+.|...++..|++++++|++.++++++|++.+    +++++...+++++++++
T Consensus       105 ~~al~~~~--~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~  182 (403)
T PRK08636        105 KEGYVHLV--QAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVN  182 (403)
T ss_pred             HHHHHHHH--HHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEe
Confidence            99999983  4446799999999999999999999999999999985345689998865    55555433578888999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceE
Q 012647          237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (459)
Q Consensus       237 ~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~  316 (459)
                      +||||||.++|.+++++|+++|++|+++||+||+|.++.+++.  ..+++..+....+++++++||||.||+||+|+||+
T Consensus       183 ~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i  260 (403)
T PRK08636        183 FPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGY--KTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGFV  260 (403)
T ss_pred             CCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCC--CCCChhcCCCccccEEEEEecccccCCccceeeee
Confidence            9999999999999999999999999999999999999987531  22233332122356788999999999999999998


Q ss_pred             EEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 012647          317 NVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKD  396 (459)
Q Consensus       317 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~  396 (459)
                      ++   ++++++.+....    .....+++.+.|.++..++++.      .++++++++.++++++.+.+.|+ +.|    
T Consensus       261 v~---~~~li~~~~~~~----~~~~~~~~~~~q~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~~----  322 (403)
T PRK08636        261 VG---NKKLVGALKKIK----SWLDYGMFTPIQVAATIALDGD------QSCVEEIRETYRKRRDVLIESFA-NAG----  322 (403)
T ss_pred             eC---CHHHHHHHHHHH----HHhcccCChHHHHHHHHHHhCc------HHHHHHHHHHHHHHHHHHHHHHH-HCC----
Confidence            65   888555544332    2222355667777777666532      23478889999999999999999 776    


Q ss_pred             cccccCCcceeeecCCC--------HHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          397 WSFILRQIGMFSFTGLN--------KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       397 ~~~~~~~~g~f~~~~l~--------~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      +.+..|++|+|+|+.+.        .++++.+++++||.+.||.          ||+|+. +++++++++++|+++++..
T Consensus       323 ~~~~~p~~g~~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~~~~rl~~~l~~~  401 (403)
T PRK08636        323 WELQKPRASMFVWAKIPEPARHLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALIE-NENRIRQAARNIKKFLKEL  401 (403)
T ss_pred             CcccCCCcceEEEEECCCccCCCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhh
Confidence            57778999999999763        3556787877899999972          999985 8999999999999998764

>PRK07682 hypothetical protein; Validated

Probab=100.00  E-value=1.2e-48  Score=388.08  Aligned_cols=342  Identities=16%  Similarity=0.147  Sum_probs=281.7

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccC-ceEEeecccch
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT  161 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt  161 (459)
                      +++|+|+.|+|    ..++ ++.+.+++.+.+... ...|.+..|.+++|+++|+++...+|..++++ +|++  |+|++
T Consensus        20 ~~~i~l~~~~~----~~~~-~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~--t~G~~   91 (378)
T PRK07682         20 EGVISLGVGEP----DFVT-PWNVREASIRSLEQG-YTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIV--TVGAS   91 (378)
T ss_pred             CCeEEeCCCCC----CCCC-CHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEE--eCChH
Confidence            47899999998    3333 667788888776543 36798899999999999999988778877776 7999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      ++++++  +...+.+||+|++++|+|+.|...++..|++++.++++.++++++|++.+++++.+   +++++++++||||
T Consensus        92 ~al~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~v~~~~p~NP  166 (378)
T PRK07682         92 QALDVA--MRAIINPGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITA---KTKAILLCSPNNP  166 (378)
T ss_pred             HHHHHH--HHHhCCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCc---ccEEEEEECCCCC
Confidence            999998  34447799999999999999999999999999999986455689999999998875   6778888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+++.+++++|+++|++|++++|+||+|.++.+++   ...++..+.+..+++++++||||.|++||+|+||+++   
T Consensus       167 tG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~---~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~---  240 (378)
T PRK07682        167 TGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDE---AYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAA---  240 (378)
T ss_pred             cCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCC---CCCChhhcccccCCEEEEecCcccccChhhhhhhhhc---
Confidence            9999999999999999999999999999999998763   1223333333346899999999999999999999966   


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  401 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  401 (459)
                      +++.++.+...    ......+++.++|.++..+|+++.      .++++.++.++++++.+.+.|+ ++|    +++..
T Consensus       241 ~~~~i~~l~~~----~~~~~~~~~~~~q~a~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~L~-~~~----~~~~~  305 (378)
T PRK07682        241 PVYFSEAMLKI----HQYSMMCAPTMAQFAALEALRAGN------DDVIRMRDSYRKRRNFFVTSFN-EIG----LTCHV  305 (378)
T ss_pred             CHHHHHHHHHH----HHhhccCCCHHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHHHHH-HCC----CccCC
Confidence            88855555443    223334678889999988887652      2367889999999999999999 886    57788


Q ss_pred             CCcceeeecCC-----C-HHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHHHhhcC
Q 012647          402 RQIGMFSFTGL-----N-KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYHNVS  459 (459)
Q Consensus       402 ~~~g~f~~~~l-----~-~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~~~~~~  459 (459)
                      |+||+|+|+.+     + .++++.+++++||.+.||.          |||++. +++++++++++|++++++++
T Consensus       306 p~g~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~~~  378 (378)
T PRK07682        306 PGGAFYAFPSISSTGLSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYAT-SLEQLQEAMKRMKRFVENKK  378 (378)
T ss_pred             CCeeEEEEEeccCCCCCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCC-CHHHHHHHHHHHHHHHhhcC
Confidence            99999999743     3 3556788777899999861          999998 88999999999999998763

>PRK06348 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.4e-48  Score=387.98  Aligned_cols=353  Identities=14%  Similarity=0.157  Sum_probs=280.4

Q ss_pred             CCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCC
Q 012647           66 PPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNS  145 (459)
Q Consensus        66 ~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~  145 (459)
                      ....+.++....+.  .+++++|+.|.|    ..++ ++.+.+++.+.+... ...|++..|.++||+++++++...++.
T Consensus        14 ~~~~~~~~~~~~~~--~~~~i~l~~g~p----~~~~-~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~~~   85 (384)
T PRK06348         14 EVNIMAEIATLAKK--FPDIIDLSLGDP----DLIT-DESIINAAFEDAKKG-HTRYTDSGGDVELIEEIIKYYSKNYDL   85 (384)
T ss_pred             CccHHHHHHHHHHh--cCCcEEcCCCCC----CCCC-CHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCC
Confidence            34445555544432  357899999988    4443 567766555544333 378999999999999999999888888


Q ss_pred             ccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc
Q 012647          146 VLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA  225 (459)
Q Consensus       146 ~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~  225 (459)
                      .+++++|++  |+|+++++.++  +...+.+||+|++++|+|..|...++.+|++++.+|+.+++++.+|++.+++.+++
T Consensus        86 ~~~~~~i~i--t~G~~~al~~~--~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~  161 (384)
T PRK06348         86 SFKRNEIMA--TVGACHGMYLA--LQSILDPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITS  161 (384)
T ss_pred             CCChhhEEE--cCChHHHHHHH--HHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCc
Confidence            889999999  99999999998  34447799999999999999999999999999999986556788999999998865


Q ss_pred             CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC
Q 012647          226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (459)
Q Consensus       226 ~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (459)
                         +++++++++||||||.++|.+++++|+++|++||++||+||+|.++.+++   ...++..+....+++++++||||.
T Consensus       162 ---~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~---~~~~~~~~~~~~~~vi~~~SfSK~  235 (384)
T PRK06348        162 ---KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYE---DFVPMATLAGMPERTITFGSFSKD  235 (384)
T ss_pred             ---CccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCC---CccchhhcCCCcCcEEEEecchhc
Confidence               56777888999999999999999999999999999999999999998753   122333332224689999999999


Q ss_pred             cccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          306 LGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD  385 (459)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  385 (459)
                      ||+||+|+||+++   +++..+.    +.........+++.++|.++..+|.+.      .+++++.++.++++++.+.+
T Consensus       236 ~~l~GlRiG~~v~---~~~~~~~----~~~~~~~~~~~~~~~~q~~~~~~l~~~------~~~~~~~~~~~~~r~~~~~~  302 (384)
T PRK06348        236 FAMTGWRIGYVIA---PDYIIET----AKIINEGICFSAPTISQRAAIYALKHR------DTIVPLIKEEFQKRLEYAYK  302 (384)
T ss_pred             cCCccccceeeec---CHHHHHH----HHHHHHhccCCCCHHHHHHHHHHHhCc------HHHHHHHHHHHHHHHHHHHH
Confidence            9999999999966   7774444    333333333467888999998888653      34467889999999999999


Q ss_pred             HHhhccCCCCCcccccCCcceeeecCC-----C-HHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHH
Q 012647          386 SLSAKDKSGKDWSFILRQIGMFSFTGL-----N-KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLAD  449 (459)
Q Consensus       386 ~L~~~~g~~~~~~~~~~~~g~f~~~~l-----~-~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~  449 (459)
                      .|+ +++   ++++..|+||||+|+.+     + .++++.+++++||.+.||.          |||++. ++++++++++
T Consensus       303 ~L~-~~~---~~~~~~p~gg~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~al~  377 (384)
T PRK06348        303 RIE-SIP---NLSLHPPKGSIYAFINIKKTGLSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACTV-GIEVLEEAFN  377 (384)
T ss_pred             HHh-cCC---CceeccCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEecC-CHHHHHHHHH
Confidence            998 763   25778899999999754     2 3557778877899999872          999985 8899999999


Q ss_pred             HHHHH
Q 012647          450 AIIDS  454 (459)
Q Consensus       450 ~l~~~  454 (459)
                      +|++.
T Consensus       378 ~l~~~  382 (384)
T PRK06348        378 RIEKM  382 (384)
T ss_pred             HHHhh
Confidence            98764

>PLN02231 alanine transaminase

Probab=100.00  E-value=9.9e-48  Score=391.97  Aligned_cols=354  Identities=15%  Similarity=0.135  Sum_probs=276.4

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhc--C-CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER--G-ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~--~-~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      .+++|+|+.|.+    .+   |..+++...+.+..  + ....|++..|.++||++||+++...+|..+++++|++  |+
T Consensus       128 ~p~~i~~~~~~~----~f---p~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~i--T~  198 (534)
T PLN02231        128 HPSLLDKSETHG----LF---SADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFL--TD  198 (534)
T ss_pred             CCccCCCCCccc----cC---CHHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEE--eC
Confidence            468888886554    44   34555555555543  2 3467999999999999999999888899999999999  99


Q ss_pred             cchhHHHHHHHHHHHhC-CCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCC---CCcEEEE
Q 012647          159 SGTGSLRLAAALIERYF-PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP---GGSFILL  234 (459)
Q Consensus       159 ggt~a~~l~~~~~~~~~-~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~---~~~~~ii  234 (459)
                      |+++++.++..+  .+. +||.|+++.|+|+.|...++..|+++++++++++++|++|+++|++++++..   .++++++
T Consensus       199 Ga~~ai~~~~~~--l~~~~gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~iv  276 (534)
T PLN02231        199 GASPAVHMMMQL--LIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALV  276 (534)
T ss_pred             CHHHHHHHHHHH--hccCCCCEEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEE
Confidence            999999998433  354 7999999999999999999999999999999766678999999999987521   2567788


Q ss_pred             eCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh------cCCeEEEEEcCCcCc-c
Q 012647          235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT------RGMELLVAQSYSKNL-G  307 (459)
Q Consensus       235 ~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~S~SK~~-~  307 (459)
                      ++|||||||.+++.+++++|+++|++||++||+||+|+++.|++. ....++..+..      ...++++++||||.+ |
T Consensus       277 l~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~-~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g  355 (534)
T PLN02231        277 VINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPD-KKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYG  355 (534)
T ss_pred             EeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC-CCcccHHHHHhhhccccCCceEEEEeccCccccc
Confidence            899999999999999999999999999999999999999998521 12233433321      123689999999975 8


Q ss_pred             cCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCCh----hhHHHHHHHHHHHHHHHHHHHHHH
Q 012647          308 LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNP----ALFDEWKAEMEMMAGRIKNVRQKL  383 (459)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~l  383 (459)
                      ++|+|+||+++...+++..+.+.+.    .. ...+++..+|.++..+++.+    ..++.|.++.+.+++.|+++++.+
T Consensus       356 ~pGlRiGy~~~~~~~~~l~~~l~k~----~~-~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l  430 (534)
T PLN02231        356 ECGKRGGYMEVTGFTSDVREQIYKV----AS-VNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTL  430 (534)
T ss_pred             CCccceEEEEEecCCHHHHHHHHHH----Hh-hhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999996533367755544432    22 23356778888888888753    223344555677889999999999


Q ss_pred             HHHHhhccCCCCCcccccCCcceeeecCC--CH---------------HHHHHHHhcccEEEcCCC-----------cEE
Q 012647          384 FDSLSAKDKSGKDWSFILRQIGMFSFTGL--NK---------------AQSDNMTNKWHVYMTKDG-----------RIS  435 (459)
Q Consensus       384 ~~~L~~~~g~~~~~~~~~~~~g~f~~~~l--~~---------------~~~~~ll~~~gI~v~~gg-----------Ris  435 (459)
                      .+.|+ ++.   ++.+..|+||||+|+++  ..               .++.+|++++||.++||.           |++
T Consensus       431 ~~~L~-~~~---gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit  506 (534)
T PLN02231        431 EDALN-SLE---GVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCT  506 (534)
T ss_pred             HHHHh-cCC---CceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEE
Confidence            99999 872   27888999999999543  21               135678888899999972           899


Q ss_pred             EccCChhhHHHHHHHHHHHHhh
Q 012647          436 LAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       436 ~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                      |.. +++++++++++|.+++++
T Consensus       507 ~~~-~~e~l~eal~RL~~~~~~  527 (534)
T PLN02231        507 ILP-QEDKIPAIVSRLTEFHKS  527 (534)
T ss_pred             eCC-CHHHHHHHHHHHHHHHHH
Confidence            976 889999999999988765

>PLN02656 tyrosine transaminase

Probab=100.00  E-value=7e-48  Score=385.64  Aligned_cols=349  Identities=17%  Similarity=0.135  Sum_probs=282.0

Q ss_pred             CCCCceeecccccCCCC-CCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           81 TDEKKLNLGVGAYRTEE-LQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        81 ~~~~~i~l~~g~~~~~~-~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      .++++|+|++|+| +.. .++ +++.+.+++.+++......+|++..|.+++|+++++++...+|..+++++|++  |+|
T Consensus        29 ~~~~~i~l~~G~p-~~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G  104 (409)
T PLN02656         29 NGKRVISLGMGDP-TAYSCFH-TTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFI--TSG  104 (409)
T ss_pred             cCCeeeecCCCCC-CcCCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEE--eCC
Confidence            4578999999998 211 133 38899999998886654478999999999999999999888888888999999  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCC
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~  239 (459)
                      +++++.++.  ...+.+||+|++++|+|+.|....+..|++++.+|+.+++++.+|++.+++.+++   +++++++++||
T Consensus       105 ~~~al~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~---~~~~v~l~~P~  179 (409)
T PLN02656        105 CTQAIDVAL--SMLARPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQ---NTVALVIINPG  179 (409)
T ss_pred             hHHHHHHHH--HHHhCCCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhcc---CceEEEEECCC
Confidence            999999984  3346899999999999999998889999999999986555788999999998875   67888889999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEE
Q 012647          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (459)
Q Consensus       240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (459)
                      ||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+ +...++++++||||.|++||+|+||+++ 
T Consensus       180 NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~~~~~vi~~~SfSK~f~~pGlRiG~~i~-  255 (409)
T PLN02656        180 NPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSN--PFVPMGVF-GSIVPVLTLGSLSKRWIVPGWRLGWFVT-  255 (409)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCC--CcccHHHh-cccCcEEEEcccchhccCcceeEEEEEE-
Confidence            9999999999999999999999999999999999987642  22233222 3446899999999999999999999954 


Q ss_pred             eC-------ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          320 CS-------SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       320 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                       +       +++.++++    ...... +.+++.++|.++..+|++..     .+++++.++.++++++.+.+.|+ +++
T Consensus       256 -~~~~~~~~~~~~~~~~----~~~~~~-~~~~s~~~q~a~~~~l~~~~-----~~~~~~~~~~~~~~r~~~~~~L~-~~~  323 (409)
T PLN02656        256 -TDPSGSFRDPKIVERI----KKYFDI-LGGPATFIQAAVPTILEQTD-----ESFFKKTINILKQSSDICCDRIK-EIP  323 (409)
T ss_pred             -eCcccccccHHHHHHH----HHHHhh-hcCCCHHHHHHHHHHHhcCc-----HHHHHHHHHHHHHHHHHHHHHHh-hCC
Confidence             2       23534443    332222 33678889999998887531     23467888999999999999999 764


Q ss_pred             CCCCcc-cccCCcceeeecCCC---------H-HHHHHHHhcccEEEcCCC--------cEEEccCChhhHHHHHHHHHH
Q 012647          393 SGKDWS-FILRQIGMFSFTGLN---------K-AQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIID  453 (459)
Q Consensus       393 ~~~~~~-~~~~~~g~f~~~~l~---------~-~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e~i~~~~~~l~~  453 (459)
                      .   +. +..|+||+|+|+.++         . +++.++++++||.+.||.        ||+|+. +++++++++++|++
T Consensus       324 ~---~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~~-~~e~l~eal~rl~~  399 (409)
T PLN02656        324 C---ITCPHKPEGSMAVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGLKNWLRITFAA-DPSSLEEALGRIKS  399 (409)
T ss_pred             C---CcCCcCCCeEEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeCC-CHHHHHHHHHHHHH
Confidence            1   22 357899999998652         2 456677777899999982        999997 89999999999999


Q ss_pred             HHhhc
Q 012647          454 SYHNV  458 (459)
Q Consensus       454 ~~~~~  458 (459)
                      ++.+.
T Consensus       400 ~~~~~  404 (409)
T PLN02656        400 FYLRH  404 (409)
T ss_pred             HHHHh
Confidence            88753

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=100.00  E-value=5.5e-48  Score=385.51  Aligned_cols=357  Identities=17%  Similarity=0.142  Sum_probs=281.3

Q ss_pred             CCCCccchhHHHhh---hCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhc
Q 012647           65 APPDPILGVSEAFK---ADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFG  141 (459)
Q Consensus        65 ~~~~~i~~~~~~~~---~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~  141 (459)
                      .+++.+..+...++   ...+.++|+|+.|+|    .+++ ++.+.+++.+.+..  ...|++..|.++||+++|+++..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p----~~~~-~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~~~~   80 (396)
T PRK09147          8 LQPYPFEKLRALFAGVTPPADLPPISLSIGEP----KHPT-PAFIKDALAANLDG--LASYPTTAGLPALREAIAAWLER   80 (396)
T ss_pred             CCcchHHHHHHHHHhhhhccCCCeEecCCCCC----CCCC-CHHHHHHHHHHhhh--hcCCCCCCCCHHHHHHHHHHHHH
Confidence            34444544444443   234578999999998    4443 78888888877642  47899999999999999999988


Q ss_pred             CCCCc-cccC-ceEEeecccchhHHHHHHHHHHHhCC---CCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCH
Q 012647          142 ADNSV-LKEQ-RVATVQGLSGTGSLRLAAALIERYFP---GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF  216 (459)
Q Consensus       142 ~~~~~-~~~~-~i~~~~t~ggt~a~~l~~~~~~~~~~---gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~  216 (459)
                      .+|.. ++++ +|++  |+|+++++.++.  ...+.+   ||.|++++|+|..|...++..|++++++|++++++|++|+
T Consensus        81 ~~g~~~~~~~~~i~i--t~G~~~al~~~~--~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~  156 (396)
T PRK09147         81 RYGLPALDPATQVLP--VNGSREALFAFA--QTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDF  156 (396)
T ss_pred             HhCCCcCCccceEEE--CCChHHHHHHHH--HHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEEEEeccCccccCccCH
Confidence            77887 8885 8999  999999999983  344678   8999999999999999999999999999997556789999


Q ss_pred             HHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH--H--hc
Q 012647          217 EGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF--A--TR  292 (459)
Q Consensus       217 e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~--~--~~  292 (459)
                      +.+++.+.+   +++++++||||||||.++|.+++++|+++|++|+++||+||+|.++.+++.......+...  .  +.
T Consensus       157 ~~l~~~~~~---~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  233 (396)
T PRK09147        157 DAVPAEVWA---RTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDD  233 (396)
T ss_pred             HHHHHHHhh---ccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccc
Confidence            999988865   6788888999999999999999999999999999999999999999875311111111111  1  12


Q ss_pred             CCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHH
Q 012647          293 GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMM  372 (459)
Q Consensus       293 ~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~  372 (459)
                      .+++++++||||.|+++|+|+||+++   ++++++.+...    ......+++.+.|.++...+.+.       +++++.
T Consensus       234 ~~~vi~~~S~SK~~~~~GlRiG~~~~---~~~l~~~~~~~----~~~~~~~~~~~~q~a~~~~~~~~-------~~~~~~  299 (396)
T PRK09147        234 FKRLVVFHSLSKRSNVPGLRSGFVAG---DAALLKKFLLY----RTYHGCAMPPAVQAASIAAWNDE-------AHVREN  299 (396)
T ss_pred             cccEEEEeccccccCCccceeeeecC---CHHHHHHHHHH----hhhcccCCCHHHHHHHHHHhcch-------hHHHHH
Confidence            36899999999999999999999865   77755554432    22223366777888876666543       346888


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCC---HHHHHHHHhcccEEEcCC--------------C--c
Q 012647          373 AGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKD--------------G--R  433 (459)
Q Consensus       373 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~g--------------g--R  433 (459)
                      ++.++++++.+.+.|+ +.     +.+..|++|+|+|+.+.   .+++.++++++||.+.||              +  |
T Consensus       300 ~~~~~~~~~~~~~~L~-~~-----~~~~~p~~g~f~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iR  373 (396)
T PRK09147        300 RALYREKFDAVTPILA-PV-----LDVQLPDAGFYLWAKVPGDDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVR  373 (396)
T ss_pred             HHHHHHHHHHHHHHHH-Hh-----cCCCCCCeeEEEEEECCCCHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEE
Confidence            9999999999999998 64     35667899999999763   456778887789999875              1  9


Q ss_pred             EEEccCChhhHHHHHHHHHHHHh
Q 012647          434 ISLAGLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       434 is~~~~~~e~i~~~~~~l~~~~~  456 (459)
                      |+|+. +++++++++++|++++.
T Consensus       374 i~~~~-~~~~l~~~l~rl~~~~~  395 (396)
T PRK09147        374 IALVA-PLAECVEAAERIVDFCR  395 (396)
T ss_pred             EEecC-CHHHHHHHHHHHHHHhc
Confidence            99998 78899999999998774

>PRK08960 hypothetical protein; Provisional

Probab=100.00  E-value=6.1e-48  Score=384.03  Aligned_cols=355  Identities=17%  Similarity=0.213  Sum_probs=285.4

Q ss_pred             CCCCccchhHHHhhh--CCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcC
Q 012647           65 APPDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGA  142 (459)
Q Consensus        65 ~~~~~i~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~  142 (459)
                      ..+.++.++......  ..++++++|+.|.|    .+++ ++.+.+++.+.+.... ..|.+..|.+++|+++|+++...
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~----~~~~-~~~v~~a~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~   85 (387)
T PRK08960         12 IEPFHVMALLARANELEAAGHDVIHLEIGEP----DFTT-AEPIVAAGQAALAAGH-TRYTAARGLPALREAIAGFYAQR   85 (387)
T ss_pred             CCchHHHHHHHHHHHHHhcCCCeEEeCCCCC----CCCC-CHHHHHHHHHHHhcCC-CccCCCCCCHHHHHHHHHHHHHH
Confidence            345555555544321  12467899999998    4443 8889999998886443 67999999999999999999887


Q ss_pred             CCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHH
Q 012647          143 DNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIAD  222 (459)
Q Consensus       143 ~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~  222 (459)
                      +|..+++++|++  |+|++++++++..  ..+.+||+|++++|+|+.+...++..|++++.+|++.+.++.+|++.+++.
T Consensus        86 ~g~~~~~~~i~i--t~G~~~al~~~~~--~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~  161 (387)
T PRK08960         86 YGVDVDPERILV--TPGGSGALLLASS--LLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERH  161 (387)
T ss_pred             hCCCCChhhEEE--ccCcHHHHHHHHH--HhcCCCCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHH
Confidence            788888999999  9999999999843  346799999999999999999999999999999986555678999999998


Q ss_pred             HHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcC
Q 012647          223 IKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY  302 (459)
Q Consensus       223 i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~  302 (459)
                      +++   +++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++   ...++   ....+++++++||
T Consensus       162 ~~~---~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~---~~~~~---~~~~~~vi~~~S~  232 (387)
T PRK08960        162 WNA---DTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGV---DAASV---LEVDDDAFVLNSF  232 (387)
T ss_pred             hCc---cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCC---CCCCh---hhccCCEEEEeec
Confidence            875   67788889999999999999999999999999999999999999988753   12222   2334689999999


Q ss_pred             CcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Q 012647          303 SKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQK  382 (459)
Q Consensus       303 SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (459)
                      ||.||++|+|+||+++   +++.++.+    .........+++.+.|.++..+|.+. .    .+++++.++.++++++.
T Consensus       233 SK~~g~~GlRiG~~~~---~~~~~~~~----~~~~~~~~~~~s~~~q~a~~~~l~~~-~----~~~l~~~~~~~~~~~~~  300 (387)
T PRK08960        233 SKYFGMTGWRLGWLVA---PPAAVPEL----EKLAQNLYISASTPAQHAALACFEPE-T----LAILEARRAEFARRRDF  300 (387)
T ss_pred             ccccCCcccEEEEEEc---CHHHHHHH----HHHHhhhccCCCHHHHHHHHHHhhcC-c----HHHHHHHHHHHHHHHHH
Confidence            9999999999999976   77744443    33333334467888999888887642 1    34578889999999999


Q ss_pred             HHHHHhhccCCCCCccc-ccCCcceeeecCC-----C-HHHHHHHHhcccEEEcCC---------C--cEEEccCChhhH
Q 012647          383 LFDSLSAKDKSGKDWSF-ILRQIGMFSFTGL-----N-KAQSDNMTNKWHVYMTKD---------G--RISLAGLSLAKC  444 (459)
Q Consensus       383 l~~~L~~~~g~~~~~~~-~~~~~g~f~~~~l-----~-~~~~~~ll~~~gI~v~~g---------g--Ris~~~~~~e~i  444 (459)
                      +.+.|+ ++|    +.+ ..|.+|+|+|+.+     + .++++++++++||.+.||         +  ||+++. +.+++
T Consensus       301 l~~~L~-~~~----~~~~~~p~g~~f~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~-~~~~l  374 (387)
T PRK08960        301 LLPALR-ELG----FGIAVEPQGAFYLYADISAFGGDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ-SLPRL  374 (387)
T ss_pred             HHHHHH-hcC----CcCCcCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC-CHHHH
Confidence            999999 876    343 4688999999865     2 345678887789999987         1  999997 78888


Q ss_pred             HHHHHHHHHHHh
Q 012647          445 EYLADAIIDSYH  456 (459)
Q Consensus       445 ~~~~~~l~~~~~  456 (459)
                      +.++++|.+++.
T Consensus       375 ~~al~~l~~~~~  386 (387)
T PRK08960        375 QEAVERIARGLR  386 (387)
T ss_pred             HHHHHHHHHHHh
Confidence            999998888764

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=100.00  E-value=6.7e-48  Score=383.48  Aligned_cols=340  Identities=18%  Similarity=0.152  Sum_probs=274.6

Q ss_pred             CCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccC-ceEEeeccc
Q 012647           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLS  159 (459)
Q Consensus        81 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~g  159 (459)
                      .++++++|+.|.|    ..++ ++.+.+++.+.+......+|++..|.++||+++++++...++..++++ +|++  |+|
T Consensus        27 ~~~~~~~l~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~--t~G   99 (383)
T TIGR03540        27 EGVDVISLGIGDP----DLPT-PKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLS--LIG   99 (383)
T ss_pred             cCCCeEEeCCCCC----CCCC-CHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEE--CCC
Confidence            3568999999988    4443 788889888877543347899999999999999999987777777776 6888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCC
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~  239 (459)
                      +++++.++.  ...+.+||+|++++|+|+.|...++..|++++.+|+++++++.+|++++++++.+   +++++++++||
T Consensus       100 ~~~~l~~~~--~~~~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~---~~~~v~i~~P~  174 (383)
T TIGR03540       100 SKEGIAHIP--LAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAK---KAKLMFINYPN  174 (383)
T ss_pred             cHHHHHHHH--HHhCCCCCEEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhccc---cceEEEEeCCC
Confidence            999999984  3346799999999999999999999999999999996555678899999988865   67888889999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEE
Q 012647          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (459)
Q Consensus       240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (459)
                      ||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+....+++++++||||.||++|+|+||+++ 
T Consensus       175 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~--~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~-  251 (383)
T TIGR03540       175 NPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGY--KAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVG-  251 (383)
T ss_pred             CCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCC--CCcCcccCCCcccCEEEEEecccccCCccceeeEEeC-
Confidence            9999999999999999999999999999999999887531  1222222211235789999999999999999999965 


Q ss_pred             eCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccc
Q 012647          320 CSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF  399 (459)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~  399 (459)
                        ++++++.+...    ......+++.+.|.++..+|++.      .+++++.++.++++++.+.+.|+ +.|    +.+
T Consensus       252 --~~~l~~~~~~~----~~~~~~~~~~~~q~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~L~-~~~----~~~  314 (383)
T TIGR03540       252 --NADLIAGLGKV----KTNVDSGVFQAIQYAAIAALNGP------QDVVKEIRKIYQRRRDLLLEALK-KIG----IDV  314 (383)
T ss_pred             --CHHHHHHHHHH----HHhcccCCChHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHHHHHHH-hCC----CEe
Confidence              78855554433    22233466777888888888764      23467888999999999999999 876    577


Q ss_pred             ccCCcceeeecCCC-----HHHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHH
Q 012647          400 ILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIID  453 (459)
Q Consensus       400 ~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~  453 (459)
                      ..+++|+|+|+.+.     .++++++++++||.+.||        +  ||+++. ++++++.++++|++
T Consensus       315 ~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~  382 (383)
T TIGR03540       315 EKPKATFYVWVPVPEGYTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTV-PDERLEEAVARIKK  382 (383)
T ss_pred             cCCCcceEEEEECCCCCCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEecC-CHHHHHHHHHHHhh
Confidence            88899999998652     456778887789999987        2  999986 78888888888764

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=100.00  E-value=5.4e-48  Score=384.42  Aligned_cols=339  Identities=19%  Similarity=0.154  Sum_probs=273.2

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccC-ceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~gg  160 (459)
                      ++++++|+.|.|    ..++ ++.+.+++.+.+.......|++..|.++||+++++++...+|..++++ +|++  |+|+
T Consensus        30 ~~~~i~l~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~--t~G~  102 (385)
T PRK09276         30 GVDVISLGIGDP----DLPT-PDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVIS--LIGS  102 (385)
T ss_pred             CCCEEEecCCCC----CCCC-CHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEE--ccCc
Confidence            467999999987    3333 778899998877543347898899999999999999987778777787 5888  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      ++++.++..  ..+.+||+|++++|+|+.|...++..|++++.+|+++++++.+|++.+++.+.+   ++++++++||||
T Consensus       103 ~~~i~~~~~--~~~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~---~~~~v~l~~p~N  177 (385)
T PRK09276        103 KEGIAHIPL--AFVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAK---KAKLMFINYPNN  177 (385)
T ss_pred             HHHHHHHHH--HhCCCCCEEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhccc---cceEEEEeCCCC
Confidence            999999843  346799999999999999999999999999999996555677899999888765   678888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      |||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+....+++++++||||.||++|+|+||+++  
T Consensus       178 PtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~--  253 (385)
T PRK09276        178 PTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGY--KPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVG--  253 (385)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCC--CCCChhccCCCcCCEEEEecchhhcCCcchhheeeeC--
Confidence            999999999999999999999999999999999886531  1223322212235789999999999999999999965  


Q ss_pred             CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012647          321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  400 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  400 (459)
                       +++.++.+...    ......+++...|.++..+|.+.      .+++++.+++++++++.+.+.|+ ++|    +++.
T Consensus       254 -~~~l~~~~~~~----~~~~~~~~~~~~q~~~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~~----~~~~  317 (385)
T PRK09276        254 -NADLIAGLGKV----KSNVDSGVFQAIQEAGIAALNGP------QEVVEELRKIYQERRDILVEGLR-KLG----LEVE  317 (385)
T ss_pred             -CHHHHHHHHHH----HhhccCCCCHHHHHHHHHHHcCc------HHHHHHHHHHHHHHHHHHHHHHH-hCC----Cccc
Confidence             88855555442    22333356667888888888652      24467889999999999999999 876    5777


Q ss_pred             cCCcceeeecCCC-----HHHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHH
Q 012647          401 LRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIID  453 (459)
Q Consensus       401 ~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~  453 (459)
                      .+++|+|+|+.+.     .++++++++++||.+.||        +  ||+|+. +++++.+++++|.+
T Consensus       318 ~~~~~~~~~v~~~~~~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~  384 (385)
T PRK09276        318 PPKATFYVWAPVPKGYTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTV-PDERIEEAVERIKK  384 (385)
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeCC-CHHHHHHHHHHHhh
Confidence            8899999998652     355778887789999997        2  999986 78888888888764

>PRK06290 aspartate aminotransferase; Provisional

Probab=100.00  E-value=9.1e-48  Score=383.64  Aligned_cols=342  Identities=15%  Similarity=0.126  Sum_probs=276.6

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCc-cccC-ceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSV-LKEQ-RVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~-~~~~-~i~~~~t~g  159 (459)
                      +.++|+|+.|+|    ...+ ++.+.+++.+.+.......|+ ..|.++||+++|+++...+|.. ++++ +|++  |+|
T Consensus        43 ~~~~i~L~~g~p----~~~~-~~~~~~~l~~~~~~~~~~~Y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~i--t~G  114 (410)
T PRK06290         43 DMELIDMGVGEP----DEMA-DESVVEVLCEEAKKPENRGYA-DNGIQEFKEAAARYMEKVFGVKDIDPVTEVIH--SIG  114 (410)
T ss_pred             CCCeEEcCCCCC----CCCC-CHHHHHHHHHHHhCCCCCCCC-CCCcHHHHHHHHHHHHHHcCCCcCCCcceEEE--ccC
Confidence            446899999998    3333 677888887766433335685 4899999999999998877887 8886 7999  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCC
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~  239 (459)
                      +++++.++.  ...+.+||.|++++|+|+.|...++..|++++.+|+++++++.+|++.+++++.+   +++++++++||
T Consensus       115 s~~al~~~~--~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~---~~k~i~l~nP~  189 (410)
T PRK06290        115 SKPALAMLP--SCFINPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKE---KAKLLYLNYPN  189 (410)
T ss_pred             HHHHHHHHH--HHhCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcc---cceEEEEECCC
Confidence            999999983  3346799999999999999999999999999999997555688899999998865   67888889999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEE
Q 012647          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (459)
Q Consensus       240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (459)
                      ||||.+++.+++++|+++|++||++||+||+|.++.+++.   ..++..+....+++++++||||.||++|+|+||+++ 
T Consensus       190 NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~---~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~-  265 (410)
T PRK06290        190 NPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGK---PLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVG-  265 (410)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCC---CcChhcCCCccccEEEEeechhhcCCchhheEeEEe-
Confidence            9999999999999999999999999999999999987531   123222222335789999999999999999999966 


Q ss_pred             eCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccc
Q 012647          320 CSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF  399 (459)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~  399 (459)
                        +++.++.+    .........+++.++|.++..+|+++.+       +++.+++++++++.+.+.|+ ++|    +.+
T Consensus       266 --~~~l~~~l----~~~~~~~~~~~~~~~q~aa~~~l~~~~~-------~~~~~~~~~~~~~~l~~~L~-~~g----~~~  327 (410)
T PRK06290        266 --NELIVKAF----ATVKDNNDSGQFIAIQKAGIYALDHPEI-------TEKIREKYSRRLDKLVKILN-EVG----FKA  327 (410)
T ss_pred             --CHHHHHHH----HHHHhccccCCcHHHHHHHHHHhhCcHH-------HHHHHHHHHHHHHHHHHHHH-hCC----Cee
Confidence              88854444    3333334446667889999888887532       57788999999999999999 886    577


Q ss_pred             ccCCcceeeecCCC------------HHHHHHHHhcccEEEcCCC------cEEEccC--ChhhHHHHHHHHHHHHhhc
Q 012647          400 ILRQIGMFSFTGLN------------KAQSDNMTNKWHVYMTKDG------RISLAGL--SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       400 ~~~~~g~f~~~~l~------------~~~~~~ll~~~gI~v~~gg------Ris~~~~--~~e~i~~~~~~l~~~~~~~  458 (459)
                      .+|+||||+|+.+.            .+++++|+++.+|.+.||+      ||+++..  ++|+.++++++|++.+..+
T Consensus       328 ~~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~  406 (410)
T PRK06290        328 EMPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAGHFLRFSVTFEAKDEEEEDRILEEIKRRLSDV  406 (410)
T ss_pred             cCCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCccccCeEEEEEEcccccccchhHHHHHHHHHHhhc
Confidence            88999999997542            3567888888778888862      9999843  6789999999999988764

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=100.00  E-value=1.3e-47  Score=383.51  Aligned_cols=366  Identities=13%  Similarity=0.169  Sum_probs=287.0

Q ss_pred             CccchhHHHhhhCC--CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCC
Q 012647           68 DPILGVSEAFKADT--DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNS  145 (459)
Q Consensus        68 ~~i~~~~~~~~~~~--~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~  145 (459)
                      +++..+.+.++.+.  ++++++|+.|.|.++...+ .++.+.+++.+.+.......|.|..|.++||+++++++... +.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~-~~   91 (401)
T TIGR01264        14 NPIRAIVDNMKVKPNPEKPMIKLSIGDPTVFGNLP-TDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNP-DG   91 (401)
T ss_pred             hHHHHHHHHHHhhhhcCCCeeecCCCCCCCcCCCC-CCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhc-CC
Confidence            34555555554432  3578999999982222233 37889999988776543467999999999999999998764 55


Q ss_pred             ccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc
Q 012647          146 VLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA  225 (459)
Q Consensus       146 ~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~  225 (459)
                      .+++++|++  |+|+++++.++.  ...+.+||+|++++|+|..|...++..|++++.++++.++++++|++.+++.+++
T Consensus        92 ~~~~~~i~~--t~G~~~al~~~~--~~l~~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~  167 (401)
T TIGR01264        92 PIEADDVVL--CSGCSHAIEMCI--AALANAGQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDE  167 (401)
T ss_pred             CCCHHHEEE--CcChHHHHHHHH--HHhCCCCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhcc
Confidence            678999999  999999999984  3346799999999999999999999999999999986555789999999998875


Q ss_pred             CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC
Q 012647          226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (459)
Q Consensus       226 ~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (459)
                         +++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++.  ...++..+. ...++++++||||.
T Consensus       168 ---~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~-~~~~vi~~~SfSK~  241 (401)
T TIGR01264       168 ---KTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGA--TFEPLASLS-STVPILSCGGLAKR  241 (401)
T ss_pred             ---CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCc--ccccHHHcC-CCCcEEEEccCccc
Confidence               567888899999999999999999999999999999999999999987531  223333332 22358999999999


Q ss_pred             cccCCCCcceEEEEeCC-hhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          306 LGLYAERIGAMNVVCSS-SDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF  384 (459)
Q Consensus       306 ~~~~G~RiG~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~  384 (459)
                      |+++|+|+||+++  ++ ......+.+.+...... ..+++.++|.++..+|.+. .    .+++++.++.++++++.+.
T Consensus       242 ~~~~GlRiG~iv~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~-~----~~~l~~~~~~~~~~r~~l~  313 (401)
T TIGR01264       242 WLVPGWRLGWIII--HDRRGILRDIRDGLVKLSQR-ILGPCTIVQGALPSILLRT-P----QEYFDGTLSVLESNAMLCY  313 (401)
T ss_pred             CCCccceEEEEEe--cCcchhHHHHHHHHHHHhhc-cCCCCcHHHHHHHHHHHhC-c----HHHHHHHHHHHHHHHHHHH
Confidence            9999999999965  32 12233344444443322 3366788999998888652 1    2457888999999999999


Q ss_pred             HHHhhccCCCCCcccccCCcceeeecCCC----------HHHHHHHHhcccEEEcCCC--------cEEEccCChhhHHH
Q 012647          385 DSLSAKDKSGKDWSFILRQIGMFSFTGLN----------KAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEY  446 (459)
Q Consensus       385 ~~L~~~~g~~~~~~~~~~~~g~f~~~~l~----------~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e~i~~  446 (459)
                      +.|+ +++  + +.+..|++|+|+|+.++          .++++++++++||.+.||+        ||+++. +++++++
T Consensus       314 ~~L~-~~~--~-~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~~-~~~~l~~  388 (401)
T TIGR01264       314 GALA-AVP--G-LRPVMPSGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVLTV-PVVMMEE  388 (401)
T ss_pred             HHHH-hCC--C-CcccCCCeeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEEcC-CHHHHHH
Confidence            9999 772  2 67778999999999742          3557788877899999873        999997 7899999


Q ss_pred             HHHHHHHHHhhc
Q 012647          447 LADAIIDSYHNV  458 (459)
Q Consensus       447 ~~~~l~~~~~~~  458 (459)
                      ++++|.+.++++
T Consensus       389 ~l~rl~~~~~~~  400 (401)
T TIGR01264       389 ACSRIQEFCERH  400 (401)
T ss_pred             HHHHHHHHHhcc
Confidence            999999998764

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK09148 aminotransferase; Validated

Probab=100.00  E-value=1.2e-47  Score=383.39  Aligned_cols=344  Identities=16%  Similarity=0.149  Sum_probs=272.8

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccC-ceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~gg  160 (459)
                      ++++|+|+.|.|    ..++ ++.+.+++.+.+......+|++..|.++||+++|+++...+|..++++ +|++  |+|+
T Consensus        29 ~~~~i~l~~~~p----~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~i--t~G~  101 (405)
T PRK09148         29 GADIIDLGMGNP----DLPT-PQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVA--TLGS  101 (405)
T ss_pred             CCCeEEcCCCCC----CCCC-CHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE--cCCh
Confidence            467899999987    4443 678888888776543347899999999999999999987777777887 8999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      ++++.++..  ..+.+||+|++++|+|+.|...++..|++++.+|++++..+   ++.+++.++...++++++++++|||
T Consensus       102 ~~al~~~~~--~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~---~~~l~~~~~~~~~~~~~v~l~~P~N  176 (405)
T PRK09148        102 KEGFANMAQ--AITAPGDVILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEEF---FPALERAVRHSIPKPIALIVNYPSN  176 (405)
T ss_pred             HHHHHHHHH--HhcCCCCEEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCCC---ccCHHHHHhhccccceEEEEeCCCC
Confidence            999999843  34679999999999999999999999999999998644434   3444555543224778888999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      |||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+....+++++++||||.||+||+|+||+++  
T Consensus       177 PtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~--~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~--  252 (405)
T PRK09148        177 PTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGN--PPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVG--  252 (405)
T ss_pred             CCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCC--CCCChhhCCCccCcEEEEeccccccCCcchheeeeeC--
Confidence            999999999999999999999999999999999987531  1222322212235688999999999999999999965  


Q ss_pred             CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012647          321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  400 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  400 (459)
                       +++.++.+.    ........+++.++|.++..+|+++      .+++++.++.++++++.+.+.|+ ++|    +.+.
T Consensus       253 -~~~~i~~l~----~~~~~~~~~~~~~~q~~~~~~L~~~------~~~~~~~~~~~~~~r~~l~~~L~-~~~----~~~~  316 (405)
T PRK09148        253 -NERLIAALT----RVKSYLDYGAFTPIQVAATAALNGP------QDCIAEMRELYKKRRDVLVESFG-RAG----WDIP  316 (405)
T ss_pred             -CHHHHHHHH----HHHHHhccCCChHHHHHHHHHHhCc------HHHHHHHHHHHHHHHHHHHHHHH-HcC----CccC
Confidence             888554443    3333333366778899998888754      24478889999999999999999 876    5667


Q ss_pred             cCCcceeeecCCC--------HHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          401 LRQIGMFSFTGLN--------KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       401 ~~~~g~f~~~~l~--------~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      .|++|+|+|+.+.        .++++.+++++||.+.||.          ||+++. +++++++++++|.++++++
T Consensus       317 ~p~~g~f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~~-~~~~l~~al~~l~~~l~~~  391 (405)
T PRK09148        317 PPAASMFAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALVE-NEQRIRQAARNIKRFLSSA  391 (405)
T ss_pred             CCCeeEEEEEECCCccCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHH
Confidence            7899999998652        3556778877899999972          999985 8899999999999988753

>PRK12414 putative aminotransferase; Provisional

Probab=100.00  E-value=8.6e-48  Score=382.25  Aligned_cols=336  Identities=15%  Similarity=0.180  Sum_probs=273.7

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCcccc-CceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~gg  160 (459)
                      .+++|+|+.|.|    ..++ ++.+.+++.+.+.... ..|+|..|.++||+++++++...+|..+++ ++|++  |+|+
T Consensus        28 ~~~~i~l~~g~p----~~~~-~~~~~~~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~i--t~g~   99 (384)
T PRK12414         28 QHDALNLSQGAP----NFAP-DPALVEGVARAMRDGH-NQYAPMAGIAALREALAEKTERLYGARYDPASEVTV--IASA   99 (384)
T ss_pred             hCCeEEcCCCCC----CCCC-CHHHHHHHHHHHHhCC-CCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEE--ECCh
Confidence            357999999998    4443 7888898888775443 789999999999999999987777776665 68999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      ++++.++  +...+.+||+|++++|+|..|...++.+|++++.+|++ ++++.+|++.+++.+++   +++++++++|||
T Consensus       100 ~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~---~~~~v~i~~p~N  173 (384)
T PRK12414        100 SEGLYAA--ISALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLS-PEDFRVNWDEVAAAITP---RTRMIIVNTPHN  173 (384)
T ss_pred             HHHHHHH--HHHhcCCCCEEEEeCCCccchHHHHHHcCCEEEEEecC-ccccccCHHHHHhhcCc---ccEEEEEcCCCC
Confidence            9999998  44447899999999999999999999999999999985 34678999999998875   678888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      |||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+....+++++++||||.||+||+|+||+++  
T Consensus       174 PTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~--~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~--  249 (384)
T PRK12414        174 PSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGA--RHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLA--  249 (384)
T ss_pred             CCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCC--CccCcccCcCccCcEEEEecccccccCccceEEEEec--
Confidence            999999999999999999999999999999999887542  1112222222245899999999999999999999976  


Q ss_pred             CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012647          321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  400 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  400 (459)
                       ++++++.+.+    .......+++.++|.++..+|.++..       ..+.++.|+++++.+.+.|+ +.|    +.+.
T Consensus       250 -~~~l~~~l~~----~~~~~~~~~s~~~q~a~~~~l~~~~~-------~~~~~~~~~~~r~~l~~~L~-~~g----~~~~  312 (384)
T PRK12414        250 -PAELMDEIRK----VHQFMVFSADTPMQHAFAEALAEPAS-------YLGLGAFYQRKRDLLARELA-GSR----FELL  312 (384)
T ss_pred             -CHHHHHHHHH----HHhheecCCCcHHHHHHHHHhcCChH-------HHHHHHHHHHHHHHHHHHHH-hCC----Ceec
Confidence             7775554443    33223346788899999999987543       23567889999999999999 876    6778


Q ss_pred             cCCcceeeecCC-------CHHHHHHHHhcccEEEcCCC------------cEEEccCChhhHHHHHHHHHH
Q 012647          401 LRQIGMFSFTGL-------NKAQSDNMTNKWHVYMTKDG------------RISLAGLSLAKCEYLADAIID  453 (459)
Q Consensus       401 ~~~~g~f~~~~l-------~~~~~~~ll~~~gI~v~~gg------------Ris~~~~~~e~i~~~~~~l~~  453 (459)
                      +++||||+|+.+       +.+++.++++++||.+.||.            ||+++. +++++++++++|.+
T Consensus       313 ~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~-~~~~~~~~~~rl~~  383 (384)
T PRK12414        313 PSEGSFFMLARFRHFSDESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSK-DDATLVEGARRLCS  383 (384)
T ss_pred             CCCcceEEEEcccccCCCCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecC-CHHHHHHHHHHHhh
Confidence            899999999743       34667778877899999961            999998 88999999999865

>PRK06107 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.6e-47  Score=382.59  Aligned_cols=344  Identities=19%  Similarity=0.191  Sum_probs=283.6

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      ++++++|+.|.|    ..++ ++.+.+++.+.+.... .+|.+..|.++||+++++++...+|..+++++|++  |+|++
T Consensus        32 ~~~~i~l~~g~p----~~~~-~~~~~~~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~--t~G~~  103 (402)
T PRK06107         32 GRSIVDLTVGEP----DFDT-PDHIKQAAVAAIERGE-TKYTLVNGTPALRKAIIAKLERRNGLHYADNEITV--GGGAK  103 (402)
T ss_pred             cCCEEEcCCCCC----CCCC-CHHHHHHHHHHHHcCC-CCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEE--eCCHH
Confidence            468999999998    3443 7888999988886543 68999999999999999999877788888999999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      ++++++  +...+.+||+|++++|+|..|...+...|++++.++++.++++.+|++.+++.+.+   +++++++++||||
T Consensus       104 ~al~~~--~~~~~~~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~---~~~~v~l~~p~NP  178 (402)
T PRK06107        104 QAIFLA--LMATLEAGDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITP---RTRWLILNAPSNP  178 (402)
T ss_pred             HHHHHH--HHHhcCCCCEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcCc---CceEEEEECCCCC
Confidence            999998  34447799999999999999999999999999888885455678999999998864   6777888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhc-CCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEEcCCcCcccCCCCcceEEEE
Q 012647          242 TGIDPTPEQWEKIADVIQEK-NHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAERIGAMNVV  319 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~-~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (459)
                      ||.+++.+++++|+++|++| ++++|+||+|.++.+.+.  ..+++..+.. ..+++++++||||.|++||+|+||+++ 
T Consensus       179 tG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~--~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~-  255 (402)
T PRK06107        179 TGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDE--PTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAG-  255 (402)
T ss_pred             CCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCC--CCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeec-
Confidence            99999999999999999998 999999999999877532  2223333322 235899999999999999999999966 


Q ss_pred             eCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccc
Q 012647          320 CSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF  399 (459)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~  399 (459)
                        +++..+.+..    .......+++.+.|.++..+|++.      ..++++.++.++++++.+.+.|+ +++   ++++
T Consensus       256 --~~~~~~~~~~----~~~~~~~~~s~~~q~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~L~-~~~---g~~~  319 (402)
T PRK06107        256 --PADLIAAINK----LQSQSSSCPSSISQAAAAAALNGD------QSFVTESVAVYKQRRDYALALLN-AIP---GLSC  319 (402)
T ss_pred             --CHHHHHHHHH----HHHhcccCCChHHHHHHHHHhcCC------hHHHHHHHHHHHHHHHHHHHHHh-cCC---CCcc
Confidence              7885544443    333334478889999999998753      13468888999999999999999 762   1678


Q ss_pred             ccCCcceeeecCC---------------C-HHHHHHHHhcccEEEcCCC--------cEEEccCChhhHHHHHHHHHHHH
Q 012647          400 ILRQIGMFSFTGL---------------N-KAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       400 ~~~~~g~f~~~~l---------------~-~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e~i~~~~~~l~~~~  455 (459)
                      ..|++|+|+|+.+               + .++++++++++||.+.||.        ||+|+. ++|++++++++|.+.+
T Consensus       320 ~~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~~-~~e~l~~~l~~l~~~l  398 (402)
T PRK06107        320 LVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIAT-SLETLEEACARIERAV  398 (402)
T ss_pred             cCCCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCC-CHHHHHHHHHHHHHHH
Confidence            8899999999864               2 3557788888899999983        999997 8999999999999999


Q ss_pred             hhc
Q 012647          456 HNV  458 (459)
Q Consensus       456 ~~~  458 (459)
                      +++
T Consensus       399 ~~~  401 (402)
T PRK06107        399 AAL  401 (402)
T ss_pred             Hhc
Confidence            876

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=3.3e-47  Score=384.97  Aligned_cols=347  Identities=15%  Similarity=0.179  Sum_probs=273.3

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhc-----------CCCCCCCCCcccHHHHHHHHHHHhcCCCC--ccccC
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-----------GENKEYLPIEGLAAFNKVTAELLFGADNS--VLKEQ  150 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~Y~~~~g~~~lr~aia~~l~~~~~~--~~~~~  150 (459)
                      ++|+|+.+++      +...+.+.+.++...+.           .....|++..|.++||++||+++...++.  .++++
T Consensus        39 g~i~L~~~En------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~  112 (468)
T PLN02450         39 GIIQMGLAEN------QLSFDLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPN  112 (468)
T ss_pred             eeEEeehhHh------HhhHHHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChH
Confidence            6899999987      22245555555443210           12245888899999999999999876553  47899


Q ss_pred             ceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh-hCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---
Q 012647          151 RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEYRYYDPKTVGLDFEGMIADIKAA---  226 (459)
Q Consensus       151 ~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---  226 (459)
                      +|++  |+|+++++.++  +...+.|||.|++++|+|+.|...+. ..|++++++|+++++++.+|++.+++++++.   
T Consensus       113 ~Iii--t~Ga~~al~~l--~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~  188 (468)
T PLN02450        113 KLVL--TAGATSANETL--MFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKL  188 (468)
T ss_pred             HeEE--ccChHHHHHHH--HHHhCCCCCEEEECCCCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhc
Confidence            9999  99999999998  44446799999999999999988888 5899999999865567889999999988642   


Q ss_pred             CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh--------cCCeEEE
Q 012647          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT--------RGMELLV  298 (459)
Q Consensus       227 ~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~--------~~~~~i~  298 (459)
                      ..+++++++||||||||.+++.+++++|+++|++||++||+||+|.++.+++.  +..++.....        ..+++++
T Consensus       189 ~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~--~~~s~l~~~~~~~~~~~~~~~~vi~  266 (468)
T PLN02450        189 NLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSP--GFVSVMEVLKDRKLENTDVSNRVHI  266 (468)
T ss_pred             CCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCC--CcccHHHHhhhcccccCCCCCcEEE
Confidence            23677888899999999999999999999999999999999999999877532  2223222221        2468999


Q ss_pred             EEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012647          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  378 (459)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  378 (459)
                      ++||||.|+++|+|+||+++  .++...+    .+....  .+..++.++|.++..+|+++.+..   .++++.++++++
T Consensus       267 l~S~SK~~~l~GlRiG~li~--~~~~l~~----~~~~~~--~~~~~s~~~Q~a~~~~L~~~~~~~---~~l~~~~~~l~~  335 (468)
T PLN02450        267 VYSLSKDLGLPGFRVGAIYS--NDEMVVS----AATKMS--SFGLVSSQTQYLLSALLSDKKFTK---NYLEENQKRLKQ  335 (468)
T ss_pred             EEeccccCCCCCccEEEEEE--CCHHHHH----HHHHHh--hcCCCCHHHHHHHHHHhCCchhHH---HHHHHHHHHHHH
Confidence            99999999999999999954  3344222    233222  123568889999999999876642   346788999999


Q ss_pred             HHHHHHHHHhhccCCCCCcccccCCcceeeecCCC-----------HHHHHHHHhcccEEEcCCC----------cEEEc
Q 012647          379 VRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN-----------KAQSDNMTNKWHVYMTKDG----------RISLA  437 (459)
Q Consensus       379 ~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~-----------~~~~~~ll~~~gI~v~~gg----------Ris~~  437 (459)
                      +++.+.+.|+ ++|    +.+..+++|+|+|+.+.           .++++++++++||.+.||.          ||+|+
T Consensus       336 rr~~l~~~L~-~~g----i~~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~  410 (468)
T PLN02450        336 RQKKLVSGLE-AAG----IKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFA  410 (468)
T ss_pred             HHHHHHHHHH-HcC----CcccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEec
Confidence            9999999999 887    57788999999998763           2346677887899999982          99999


Q ss_pred             cCChhhHHHHHHHHHHHHhhc
Q 012647          438 GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       438 ~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      ..+++++++++++|++++.+.
T Consensus       411 ~~~~~~l~~~l~ri~~~l~~~  431 (468)
T PLN02450        411 NMSEETLDLAMKRLKSFVESD  431 (468)
T ss_pred             CCCHHHHHHHHHHHHHHHHhc
Confidence            768899999999999988753

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=100.00  E-value=4.6e-47  Score=380.28  Aligned_cols=353  Identities=15%  Similarity=0.154  Sum_probs=280.8

Q ss_pred             CCCCceeecccccCCCC-CCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCC------CCccccCceE
Q 012647           81 TDEKKLNLGVGAYRTEE-LQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGAD------NSVLKEQRVA  153 (459)
Q Consensus        81 ~~~~~i~l~~g~~~~~~-~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~------~~~~~~~~i~  153 (459)
                      .++++|+|+.|.| +.+ ... .++.+.+++.+.+......+|++..|.++||+++|+++...+      +..+++++|+
T Consensus        31 ~~~~~i~l~~g~p-~~~~~~~-p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~  108 (412)
T PTZ00433         31 SPKSIIKLSVGDP-TLDGNLL-TPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVV  108 (412)
T ss_pred             CCCCeeecCCcCC-CCcCCCC-CCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEE
Confidence            4578999999998 221 122 278899999887765434789988999999999999987543      4667899999


Q ss_pred             EeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEE
Q 012647          154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL  233 (459)
Q Consensus       154 ~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~i  233 (459)
                      +  |+|+++++.++.  ...+.+||+|++++|+|..|...++..|++++.+|+++++++++|++++++.+++   +++++
T Consensus       109 i--t~G~~~al~~~~--~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~---~~~~i  181 (412)
T PTZ00433        109 L--CSGVSHAILMAL--TALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDD---RTKAL  181 (412)
T ss_pred             E--eCChHHHHHHHH--HHhcCCCCEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhcc---CceEE
Confidence            9  999999999984  3346799999999999999999999999999999986556789999999988875   67788


Q ss_pred             EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc
Q 012647          234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI  313 (459)
Q Consensus       234 i~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri  313 (459)
                      +++|||||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+ ....++++++||||.||+||+|+
T Consensus       182 ~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~~~~~~i~~~SfSK~~~~pGlRl  258 (412)
T PTZ00433        182 IMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGA--TFTSVADF-DTTVPRVILGGTAKNLVVPGWRL  258 (412)
T ss_pred             EEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCC--Cccchhhc-cCCCceEEEccchhhcCCCCeeE
Confidence            8999999999999999999999999999999999999999987531  22233333 22235899999999999999999


Q ss_pred             ceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-C
Q 012647          314 GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-K  392 (459)
Q Consensus       314 G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g  392 (459)
                      ||+++ ..+....+.+.+.+...... ..+++.+.|.++..+|.+. .    ..++++.++.++++++.+.+.|+ +. |
T Consensus       259 G~~i~-~~p~~~~~~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~-~----~~~~~~~~~~~~~~r~~l~~~L~-~~~~  330 (412)
T PTZ00433        259 GWLLL-VDPHGNGGDFLDGMKRLGML-VCGPCSVVQAALGEALLNT-P----QEHLEQIVAKLEEGAMVLYNHIG-ECIG  330 (412)
T ss_pred             EEEEE-eCCcccHHHHHHHHHHHhhc-cCCCChHHHHHHHHHHhcC-c----HHHHHHHHHHHHHHHHHHHHHHh-cCCC
Confidence            99953 12221122244444443322 2367888999998888652 1    34578889999999999999998 75 4


Q ss_pred             CCCCcccccCCcceeeecCCC----------HHHHHHHHhcccEEEcCCC--------cEEEccCChhhHHHHHHHHHHH
Q 012647          393 SGKDWSFILRQIGMFSFTGLN----------KAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDS  454 (459)
Q Consensus       393 ~~~~~~~~~~~~g~f~~~~l~----------~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e~i~~~~~~l~~~  454 (459)
                          +.+..|++|+|+|+.++          .++++.+++++||.+.||.        ||+|+. .++++++++++|.++
T Consensus       331 ----~~~~~p~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~~-~~e~l~~al~~l~~~  405 (412)
T PTZ00433        331 ----LSPTMPRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTISR-PVEVLREAVERIKAF  405 (412)
T ss_pred             ----CcccCCCeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEecC-CHHHHHHHHHHHHHH
Confidence                57788999999997542          3567888877899999973        999987 688999999999999


Q ss_pred             Hhhc
Q 012647          455 YHNV  458 (459)
Q Consensus       455 ~~~~  458 (459)
                      +++.
T Consensus       406 ~~~~  409 (412)
T PTZ00433        406 CERH  409 (412)
T ss_pred             HHHh
Confidence            8764

>PRK05942 aspartate aminotransferase; Provisional

Probab=100.00  E-value=4e-47  Score=378.95  Aligned_cols=340  Identities=17%  Similarity=0.175  Sum_probs=269.6

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccC-ceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~gg  160 (459)
                      ++++++|+.|.|    ..++ ++.+.+++.+.+.......|++..|.++||+++++++...++..++++ +|++  |+|+
T Consensus        34 g~~~i~l~~g~p----~~~~-p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~v--t~G~  106 (394)
T PRK05942         34 GLDLIDLGMGNP----DGAA-PQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALP--LLGS  106 (394)
T ss_pred             CCCeEEcCCCCC----CCCC-CHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEE--ccCh
Confidence            457899999987    3332 566777666655433347899999999999999999987777778887 4888  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      ++++.++.  ...+.+||+|++++|+|+.+...++..|++++.+|++.++++.+|++.+++.+.+   ++++++++||||
T Consensus       107 ~~al~~~~--~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~---~~k~i~l~~P~N  181 (394)
T PRK05942        107 KEGLTHLA--LAYVNPGDVVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQ---QAKILYFNYPSN  181 (394)
T ss_pred             HHHHHHHH--HHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhccc---cceEEEEcCCCC
Confidence            99999983  4447899999999999999999899999999999996555688999999998875   788889899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      |||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+....+.+++++||||.||++|+|+||+++  
T Consensus       182 PtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~--  257 (394)
T PRK05942        182 PTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGY--QPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVG--  257 (394)
T ss_pred             CCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCC--CCCChhhCCCccccEEEEecchhccCChhhheeeeec--
Confidence            999999999999999999999999999999999987532  1223322222234678999999999999999999966  


Q ss_pred             CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012647          321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  400 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  400 (459)
                       +++.++.+..    .......+++.++|.++..+|+..      .+++++.+++++++++.+.+.|+ ++|    +.+.
T Consensus       258 -~~~l~~~l~~----~~~~~~~~~~~~~q~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~L~-~~~----~~~~  321 (394)
T PRK05942        258 -NRHIIQGLRT----LKTNLDYGIFSALQKAAETALQLP------DSYLQQVQERYRTRRDFLIQGLG-ELG----WNIP  321 (394)
T ss_pred             -CHHHHHHHHH----HHhhcccCCCHHHHHHHHHHHhCc------HHHHHHHHHHHHHHHHHHHHHHH-HCC----Ceec
Confidence             7785555443    322223356778888888888643      34578889999999999999999 876    5777


Q ss_pred             cCCcceeeecCC----C-HHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHH
Q 012647          401 LRQIGMFSFTGL----N-KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDS  454 (459)
Q Consensus       401 ~~~~g~f~~~~l----~-~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~  454 (459)
                      .+++|+|+|+.+    + .+++.++++++||.+.||.          ||+++. +.+.+.+++++|.++
T Consensus       322 ~~~~~~f~~~~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~  389 (394)
T PRK05942        322 PTKATMYLWVPCPVGMGSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIA-DCDRLGEALDRLKQA  389 (394)
T ss_pred             CCCeeeEEEEECCCCCCHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecC-CHHHHHHHHHHHHHh
Confidence            889999999865    2 3556778877899998861          999985 667777777777653

>PRK07337 aminotransferase; Validated

Probab=100.00  E-value=3.4e-47  Score=378.91  Aligned_cols=338  Identities=17%  Similarity=0.232  Sum_probs=276.0

Q ss_pred             CCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        81 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      .++++++|+.|.|    ..++ ++.+.+++.+.+... ...|++..|.++||+++|+++...+|..+++++|++  |+|+
T Consensus        28 ~~~~~i~l~~~~~----~~~~-~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~--t~G~   99 (388)
T PRK07337         28 AGRDIIHMGIGEP----DFTA-PEPVVEAAARALRRG-VTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVV--TAGA   99 (388)
T ss_pred             cCCCEEEeCCcCC----CCCC-CHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEE--ecCc
Confidence            3568999999998    4443 678888888877644 367988899999999999999887888888999999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      +++++++.  ...+.+||+|++++|+|..+...++..|++++.+|+++++++++|++++++.+++   +++++++++|||
T Consensus       100 ~~al~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~v~l~~p~N  174 (388)
T PRK07337        100 SAALLLAC--LALVERGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGE---RTRGVLLASPSN  174 (388)
T ss_pred             HHHHHHHH--HHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCc---cceEEEEECCCC
Confidence            99999984  3347799999999999999999999999999999996555789999999998875   678888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      |||.+++.+++++|+++|+++++++|+||+|.++.+.+.   ..+.   ....+++++++||||.||++|+|+||+++  
T Consensus       175 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~---~~~~---~~~~~~vi~~~S~SK~~~~~G~RiG~~~~--  246 (388)
T PRK07337        175 PTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAA---PVSA---LSLGDDVITINSFSKYFNMTGWRLGWLVV--  246 (388)
T ss_pred             CCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCC---CcCh---hhccCCEEEEEechhhcCCchhheeeeec--
Confidence            999999999999999999999999999999999887531   1121   22346799999999999999999999966  


Q ss_pred             CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccc-
Q 012647          321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF-  399 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-  399 (459)
                       +++.++.+..    .......+++.++|.++..++.+..+     +.+++.++.++++++.+.+.|+ ++|    +.+ 
T Consensus       247 -~~~l~~~l~~----~~~~~~~~~s~~~q~~~~~~l~~~~~-----~~~~~~~~~~~~~r~~~~~~L~-~~~----~~~~  311 (388)
T PRK07337        247 -PEALVGTFEK----LAQNLFICASALAQHAALACFEPDTL-----AIYERRRAEFKRRRDFIVPALE-SLG----FKVP  311 (388)
T ss_pred             -CHHHHHHHHH----HHHHhccCCChHHHHHHHHHhccCch-----HHHHHHHHHHHHHHHHHHHHHH-hcC----Cccc
Confidence             7774444433    33233446788889998888865432     2246778999999999999999 776    343 


Q ss_pred             ccCCcceeeecCCC----------HHHHHHHHhcccEEEcCCC-----------cEEEccCChhhHHHHHHHHHHHH
Q 012647          400 ILRQIGMFSFTGLN----------KAQSDNMTNKWHVYMTKDG-----------RISLAGLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       400 ~~~~~g~f~~~~l~----------~~~~~~ll~~~gI~v~~gg-----------Ris~~~~~~e~i~~~~~~l~~~~  455 (459)
                      ..|++|+|+|+.+.          .++++++++++||.+.||.           ||+|+. +++++++++++|.+++
T Consensus       312 ~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~-~~~~l~~~l~rl~~~l  387 (388)
T PRK07337        312 VMPDGAFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYAT-SMSRLEEAVARLGKLF  387 (388)
T ss_pred             cCCCeeEEEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecC-CHHHHHHHHHHHHHHh
Confidence            46789999998652          2456788887899998861           999998 7899999999998865

>PRK06108 aspartate aminotransferase; Provisional

Probab=100.00  E-value=7.4e-47  Score=376.24  Aligned_cols=343  Identities=18%  Similarity=0.182  Sum_probs=280.9

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      +++|+|+.|+|    ..++ ++.+.+++.+.+.+.. ..|++..|.+++|+++++++...+|..+++++|++  |+|+++
T Consensus        24 ~~~i~l~~g~~----~~~~-~~~~~~~~~~~~~~~~-~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~--t~g~~~   95 (382)
T PRK06108         24 EGVLPLWFGES----DLPT-PDFIRDAAAAALADGE-TFYTHNLGIPELREALARYVSRLHGVATPPERIAV--TSSGVQ   95 (382)
T ss_pred             CCeEEecCCCC----CCCC-CHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEE--eCChHH
Confidence            57899999998    4544 7889999988876543 56999999999999999999877787788999999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecC-CCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP-KTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~-~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      ++.++.  ...+.+||+|++++|+|..|...++..|++++.+|++.+ .++.+|++.+++.+++   +++++++++||||
T Consensus        96 al~~~~--~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~---~~~~i~l~~p~NP  170 (382)
T PRK06108         96 ALMLAA--QALVGPGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITP---RTRALFINSPNNP  170 (382)
T ss_pred             HHHHHH--HHhcCCCCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCc---cceEEEEECCCCC
Confidence            999984  334679999999999999999999999999999998642 4577999999998865   6778888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+++.+++++|+++|+++|+++|+||+|.++.++. .....++..+....+++++++||||.||++|+|+||+++   
T Consensus       171 tG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~-~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~---  246 (382)
T PRK06108        171 TGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAP-GGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVA---  246 (382)
T ss_pred             CCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCC-CCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeC---
Confidence            9999999999999999999999999999999998751 112222223333346899999999999999999999976   


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  401 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  401 (459)
                      +++.++.+...    ....+.+++.+.|.++..+|.+.      .+++++.+++++++++.+.+.|+ +++   ++++..
T Consensus       247 ~~~~~~~~~~~----~~~~~~~~~~~~q~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~~---~~~~~~  312 (382)
T PRK06108        247 PPALGQVLEKL----IEYNTSCVAQFVQRAAVAALDEG------EDFVAELVARLRRSRDHLVDALR-ALP---GVEVAK  312 (382)
T ss_pred             CHHHHHHHHHH----HHhcccCCChHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHHHHHHH-hCC---CCcccC
Confidence            77755554432    22334567888899988888764      23467888999999999999998 762   267888


Q ss_pred             CCcceeeecCCC-----HHHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHHHHhh
Q 012647          402 RQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       402 ~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                      |++|+|+|+.+.     .+++++|++++||.+.||        +  |||++. +++++++++++|++++++
T Consensus       313 p~~g~~~~~~l~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~~l~~  382 (382)
T PRK06108        313 PDGAMYAFFRIPGVTDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR-DPARLDEAVERLRRFLAR  382 (382)
T ss_pred             CCeeEEEEEeCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHhC
Confidence            899999998652     356778888789999886        1  999998 999999999999998753

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=100.00  E-value=1.6e-46  Score=374.04  Aligned_cols=342  Identities=16%  Similarity=0.178  Sum_probs=278.5

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCcccc-CceEEeecccch
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGLSGT  161 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~ggt  161 (459)
                      +++|+|+.|.|    ...+ ++.+.+++.+.+.... ..|.+..|.++||+++++++...++..+++ ++|++  |+|++
T Consensus        30 ~~~i~l~~~~~----~~~~-~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~i--t~G~~  101 (391)
T PRK07309         30 PGILKLTLGEP----DFTT-PDHVKEAAKRAIDANQ-SHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILV--TIGAT  101 (391)
T ss_pred             CCeEEcCCCCC----CCCC-CHHHHHHHHHHHhcCC-CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEE--eCChH
Confidence            57999999998    3333 6778888888775433 579999999999999999998877877764 78999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      ++++++  +...+.+||+|++++|+|..|...++..|++++.+|.+ ++++.+|++.++++++..+++++++++++||||
T Consensus       102 ~al~~~--~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NP  178 (391)
T PRK07309        102 EALSAS--LTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTT-ENDFVLTPEMLEKAILEQGDKLKAVILNYPANP  178 (391)
T ss_pred             HHHHHH--HHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEEecC-CcCCcCCHHHHHHHhhccCCCeEEEEEECCCCC
Confidence            999998  44447799999999999999999999999999999984 445789999999998754346788888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+++.+++++|+++|++||+++|+|++|.++.+++.  ...++..+  ..+++++++||||.||++|+|+||+++   
T Consensus       179 tG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~--~~~~~~~~--~~~~~i~~~S~SK~~g~~GlRvG~~v~---  251 (391)
T PRK07309        179 TGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGE--PHVSIAEY--LPDQTILINGLSKSHAMTGWRIGLIFA---  251 (391)
T ss_pred             CCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCC--CCCCHHHh--ccCCEEEEecChhhccCccceeEEEEe---
Confidence            99999999999999999999999999999999987431  22233222  236899999999999999999999976   


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  401 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  401 (459)
                      +++.++.+....    .....+++.++|.++..+|++...      .....+++++++++.+.+.|+ +.|    +.+..
T Consensus       252 ~~~~~~~~~~~~----~~~~~~~~~~~q~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~l~-~~~----~~~~~  316 (391)
T PRK07309        252 PAEFTAQLIKSH----QYLVTAATTMAQFAAVEALTNGKD------DALPMKKEYIKRRDYIIEKMT-DLG----FKIIK  316 (391)
T ss_pred             CHHHHHHHHHHH----hhcccCCChHHHHHHHHHHhCChh------HHHHHHHHHHHHHHHHHHHHH-HCC----CeecC
Confidence            888665554332    223336778889999888877532      134677888999999999999 876    57888


Q ss_pred             CCcceeeecCCC-------HHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          402 RQIGMFSFTGLN-------KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       402 ~~~g~f~~~~l~-------~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      |++|+|+|+.+.       .++++++++++||.+.||.          ||+++. +.++++.++++|+++++++
T Consensus       317 p~gg~~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~~i~~l~~~~~~~  389 (391)
T PRK07309        317 PDGAFYIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAA-SMETIKEAMKRLKEYMEEH  389 (391)
T ss_pred             CCeeEEEEEECCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHHhh
Confidence            999999997542       3456677877899999872          999997 7899999999999998875

>PRK05957 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1e-46  Score=375.10  Aligned_cols=344  Identities=18%  Similarity=0.214  Sum_probs=277.7

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccc-cCceEEeecccch
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLK-EQRVATVQGLSGT  161 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~-~~~i~~~~t~ggt  161 (459)
                      +++++|+.|.|    ..++ ++.+.+++.+.+.......|.+..|.+++|+++++++....|..++ +++|++  |+|++
T Consensus        27 ~~~~~l~~g~~----~~~~-~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~--t~G~~   99 (389)
T PRK05957         27 PGTISLGQGVV----SYPP-PPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVV--TAGSN   99 (389)
T ss_pred             CCeEEccCCCC----CCCC-CHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEE--eCChH
Confidence            57899999998    3443 7889999988775443467999999999999999999877777666 678999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      +++..+.  ...+.+||+|++++|+|..+...++..|++++.+|.  ++++++|++.+++++++   +++++++++||||
T Consensus       100 ~~l~~~~--~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~~---~~klv~~~~p~NP  172 (389)
T PRK05957        100 MAFMNAI--LAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPT--DDNYQLQPEAIEQAITP---KTRAIVTISPNNP  172 (389)
T ss_pred             HHHHHHH--HHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeec--CCCCCcCHHHHHHhcCc---CceEEEEeCCCCC
Confidence            9998873  334679999999999999999989999999999998  45678999999999875   6788889999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...+...+.+...++++++||||.||++|+|+||+++   
T Consensus       173 tG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~---  247 (389)
T PRK05957        173 TGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGV--KHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVI---  247 (389)
T ss_pred             CCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCC--CccChhhCCCccCcEEEEecchhhccCccceeEEEec---
Confidence            99999999999999999999999999999999987532  1112222234456899999999999999999999976   


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  401 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  401 (459)
                      +++.++++..    .......+++.++|.++..+|+++.      .++++.++.++++++.+.+.|+ +++  +.+.+.+
T Consensus       248 ~~~~~~~~~~----~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~~~~~~r~~l~~~L~-~~~--~~~~~~~  314 (389)
T PRK05957        248 PIHLLEAIKK----IQDTILICPPVVSQYAALGALQVGK------SYCQQHLPEIAQVRQILLKSLG-QLQ--DRCTLHP  314 (389)
T ss_pred             CHHHHHHHHH----HHhhcccCCCcHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHHHHH-hcC--CCccccC
Confidence            7775555443    3333344677889999888887642      2245666778999999999998 763  1135677


Q ss_pred             CCcceeeecCC----C-HHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          402 RQIGMFSFTGL----N-KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       402 ~~~g~f~~~~l----~-~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      +++|+|+|+.+    + .++++++++++||.+.||.          |||++..+++++++++++|.+.++++
T Consensus       315 ~~gg~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~~~l~~~~~~~  386 (389)
T PRK05957        315 ANGAFYCFLKVNTDLNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQGLKTI  386 (389)
T ss_pred             CCeeEEEEEeCCCCCChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence            89999999864    3 3667888877899999972          99998778899999999999988764

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=100.00  E-value=1.3e-46  Score=375.29  Aligned_cols=338  Identities=16%  Similarity=0.120  Sum_probs=270.8

Q ss_pred             CCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCc--cccC-ceEEeec
Q 012647           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSV--LKEQ-RVATVQG  157 (459)
Q Consensus        81 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~--~~~~-~i~~~~t  157 (459)
                      .+.++++|+.|+|    ..++ ++.+.+++.+.+..  ...|++..|.++||+++|+++...++..  ++++ +|++  |
T Consensus        26 ~~~~~i~l~~~~p----~~~~-~~~~~~a~~~~~~~--~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~i--t   96 (393)
T TIGR03538        26 ASKPPIALSIGEP----KHPT-PAFVLEALRENLHG--LSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLP--V   96 (393)
T ss_pred             cCCCeEEecCCCC----CCCC-CHHHHHHHHHHhhc--cCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEE--C
Confidence            3568999999998    4443 78899998887642  4789999999999999999998877765  6785 7999  9


Q ss_pred             ccchhHHHHHHHHHHHhCCCCE--EEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEe
Q 012647          158 LSGTGSLRLAAALIERYFPGAK--VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (459)
Q Consensus       158 ~ggt~a~~l~~~~~~~~~~gd~--Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~  235 (459)
                      +|+++++.++.  ...+.|||+  |++++|+|..|...++..|++++.+|+++++++.+|++.+++++.+   +++++++
T Consensus        97 ~Ga~~al~~~~--~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~---~~k~i~l  171 (393)
T TIGR03538        97 NGTREALFAFA--QAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWR---RCQLLFV  171 (393)
T ss_pred             CCcHHHHHHHH--HHHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhh---cceEEEE
Confidence            99999999984  334679986  9999999999999999999999999996555688999999998875   6778888


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhH-HHHH--H--hcCCeEEEEEcCCcCcccCC
Q 012647          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASS-VRLF--A--TRGMELLVAQSYSKNLGLYA  310 (459)
Q Consensus       236 ~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~-~~~~--~--~~~~~~i~~~S~SK~~~~~G  310 (459)
                      +|||||||.+++.+++++|+++|++||++||+||+|.++.+++. ....+ ...+  .  ...+++++++||||.|+++|
T Consensus       172 ~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~G  250 (393)
T TIGR03538       172 CSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEG-NPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPG  250 (393)
T ss_pred             eCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCC-CCCcCHHHhcccccccccccEEEEecchhhcCCcc
Confidence            99999999999999999999999999999999999999886521 01111 1111  1  12468999999999999999


Q ss_pred             CCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012647          311 ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK  390 (459)
Q Consensus       311 ~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  390 (459)
                      +|+||+++   ++++++++...    ......+++.+.|.++...+.+.       +++++.++.++++++.+.+.|+ +
T Consensus       251 lRvG~~i~---~~~l~~~~~~~----~~~~~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~L~-~  315 (393)
T TIGR03538       251 LRSGFVAG---DAEILKAFLRY----RTYHGCAMPIPTQLASIAAWNDE-------QHVRENRALYREKFAAVLEILG-Q  315 (393)
T ss_pred             cceEEEec---CHHHHHHHHHH----HHhhccCcCHHHHHHHHHHhcCh-------HHHHHHHHHHHHHHHHHHHHHH-h
Confidence            99999865   77755554432    22222356778888877776543       3468889999999999999998 6


Q ss_pred             cCCCCCcccccCCcceeeecCCC---HHHHHHHHhcccEEEcCC------------C----cEEEccCChhhHHHHHHHH
Q 012647          391 DKSGKDWSFILRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKD------------G----RISLAGLSLAKCEYLADAI  451 (459)
Q Consensus       391 ~g~~~~~~~~~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~g------------g----Ris~~~~~~e~i~~~~~~l  451 (459)
                      .     +.+..|++|+|+|+.+.   .++++.+++++||.+.||            |    ||||+. +++++++++++|
T Consensus       316 ~-----~~~~~p~gg~f~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~-~~~~l~~~l~~l  389 (393)
T TIGR03538       316 V-----LDLELPDAGFYLWPKVPGDDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVA-PLEECVEAAERI  389 (393)
T ss_pred             h-----CcccCCCeeEEEEEECCCCHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecC-CHHHHHHHHHHH
Confidence            5     24567899999999864   455778877789999765            1    999988 889999999999


Q ss_pred             HHH
Q 012647          452 IDS  454 (459)
Q Consensus       452 ~~~  454 (459)
                      +++
T Consensus       390 ~~~  392 (393)
T TIGR03538       390 RSF  392 (393)
T ss_pred             HHh
Confidence            875

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK07324 transaminase; Validated

Probab=100.00  E-value=3.6e-47  Score=375.95  Aligned_cols=334  Identities=16%  Similarity=0.134  Sum_probs=273.4

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +.++++|++|+|    .++. ++.+ +++.+.+.... ..|++..|.++||++||+++.+     +++++|++  |+|++
T Consensus        25 ~~~~~~~~~~e~----~~~~-~~~~-~~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~~~~-----~~~~~vi~--t~G~~   90 (373)
T PRK07324         25 ESCIDSLTLEEL----LALA-GKNP-EAFYQELGQKK-LTYGWIEGSPEFKEAVASLYQN-----VKPENILQ--TNGAT   90 (373)
T ss_pred             cCCCCCCcHHHH----Hhcc-Ccch-HHHHHHHhcCC-ccCCCCCCCHHHHHHHHHHhcC-----CChhhEEE--cCChH
Confidence            458999999998    3332 5566 77777776544 6899999999999999999753     34789999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      +++.++  +...+.+||+|+++.|+|..|...++..|++++.+|+++++++.+|++.+++.+++   +++++++++||||
T Consensus        91 ~al~~~--~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~---~~kli~i~~p~NP  165 (373)
T PRK07324         91 GANFLV--LYALVEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRP---NTKLICINNANNP  165 (373)
T ss_pred             HHHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCC---CCcEEEEeCCCCC
Confidence            999998  44447899999999999999999999999999999997556778999999988765   6788999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+++++++++|+++|++||++||+||+|.++.+++   ...++   .+..+++++++||||.||++|+|+||+++   
T Consensus       166 tG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~---~~~s~---~~~~~~~I~~~s~SK~~~~~G~RiG~i~~---  236 (373)
T PRK07324        166 TGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDG---STPSI---ADLYEKGISTNSMSKTYSLPGIRVGWIAA---  236 (373)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCC---CCCCh---hhccCCEEEEecchhhcCCccceeEEEec---
Confidence            9999999999999999999999999999999988753   12222   23346789999999999999999999965   


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  401 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  401 (459)
                      +++.+++    +.+.+.....+++.+.|.++..+|++.      .+.+++.++.++++++.+.+.|+ +.+   .+.+..
T Consensus       237 ~~~li~~----~~~~~~~~~~~~~~~~q~~a~~~l~~~------~~~l~~~~~~~~~~~~~l~~~l~-~~~---~~~~~~  302 (373)
T PRK07324        237 NEEVIDI----LRKYRDYTMICAGVFDDMLASLALEHR------DAILERNRKIVRTNLAILDEWVA-KEP---RVSYVK  302 (373)
T ss_pred             CHHHHHH----HHHHhCcEEecCChHHHHHHHHHHcCH------HHHHHHHHHHHHHHHHHHHHHHh-cCC---CceEEC
Confidence            7884444    444444444567788888888888753      34578889999999999999998 763   257788


Q ss_pred             CCcceeeecCC-----CHHHHHHHHhcccEEEcCCC--------cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          402 RQIGMFSFTGL-----NKAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       402 ~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      |++|+|.|+.+     +.++++++++++||.+.||.        |||++. +++.+++++++|++++++.
T Consensus       303 p~gg~~~~i~~~~~~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~~-~~~~l~~~l~rl~~~l~~~  371 (373)
T PRK07324        303 PKAVSTSFVKLDVDMPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYCC-DTETLKKGLKKLSEFLREF  371 (373)
T ss_pred             CCceEEEEEEeCCCCCHHHHHHHHHHhcCEEEECccccCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhc
Confidence            88888766543     24678888888899999983        999998 7899999999999998763

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=1.7e-46  Score=376.97  Aligned_cols=349  Identities=16%  Similarity=0.214  Sum_probs=277.6

Q ss_pred             CCC-CceeecccccCCCCCCccCcHHHHHHHHHHhh------c-----CCCCCCCCCcccHHHHHHHHHHHhcCCC--Cc
Q 012647           81 TDE-KKLNLGVGAYRTEELQPYVLDVVKKAENLMLE------R-----GENKEYLPIEGLAAFNKVTAELLFGADN--SV  146 (459)
Q Consensus        81 ~~~-~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~------~-----~~~~~Y~~~~g~~~lr~aia~~l~~~~~--~~  146 (459)
                      .+| ++|+|+..++      ..+...+.+.+++..+      .     .....|.+..|.++||+++|+++...++  ..
T Consensus        44 ~np~g~i~l~~aeN------~l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~  117 (447)
T PLN02607         44 HNPSGVIQMGLAEN------QVSFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKAR  117 (447)
T ss_pred             cCCCceEEEechhh------hhhHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCC
Confidence            344 5999999986      2235666666655432      0     1124477889999999999999987666  36


Q ss_pred             cccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh-hCCCCeeeeeeecCCCCCCCHHHHHHHHHc
Q 012647          147 LKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEYRYYDPKTVGLDFEGMIADIKA  225 (459)
Q Consensus       147 ~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~  225 (459)
                      +++++|++  |+|++++++++.  ...+.|||.|++++|+|+.|...+. ..|+++++|+++.+++|.+|++.+++++++
T Consensus       118 v~p~~Ivi--t~G~t~al~~l~--~~l~~pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~  193 (447)
T PLN02607        118 FDPDRIVL--TAGATAANELLT--FILADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQE  193 (447)
T ss_pred             cCHHHeEE--cCChHHHHHHHH--HHhCCCCCEEEEcCCCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHH
Confidence            88999999  999999999983  3346799999999999999988887 589999999986556788999999999874


Q ss_pred             C---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc------CCeE
Q 012647          226 A---PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR------GMEL  296 (459)
Q Consensus       226 ~---~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~------~~~~  296 (459)
                      .   ..++++++++|||||||.+++++++++|+++|++|++++|+||+|..+.+++  .+..++..+...      .+++
T Consensus       194 a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~--~~f~S~~s~~~~~~~~~~~~~v  271 (447)
T PLN02607        194 AEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSA--SEFVSVAEIVEARGYKGVAERV  271 (447)
T ss_pred             HHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCC--CCcccHHHHHhhcCCCCCcCcE
Confidence            1   2367788889999999999999999999999999999999999999987753  223344443221      4589


Q ss_pred             EEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012647          297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI  376 (459)
Q Consensus       297 i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~  376 (459)
                      ++++||||.||++|+|+||++  +.++++    ...+...  ..+..++.++|.+++.+|+++++.+   +++++.++++
T Consensus       272 ~vi~s~SK~fg~~GlRvG~iv--s~n~~l----~~~~~~~--~~~~~~s~~~q~~~~~~L~d~~~~~---~~l~~~r~~l  340 (447)
T PLN02607        272 HIVYSLSKDLGLPGFRVGTIY--SYNDKV----VTTARRM--SSFTLVSSQTQHLLASMLSDEEFTE---NYIRTNRERL  340 (447)
T ss_pred             EEEEcchhcCCCCcceEEEEE--EcCHHH----HHHHHHH--hhcCCCCHHHHHHHHHHhCCchhHH---HHHHHHHHHH
Confidence            999999999999999999994  445563    3333332  2233568889999999999987753   4578889999


Q ss_pred             HHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCH-----------HHHHHHHhcccEEEcCCC----------cEE
Q 012647          377 KNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNK-----------AQSDNMTNKWHVYMTKDG----------RIS  435 (459)
Q Consensus       377 ~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~-----------~~~~~ll~~~gI~v~~gg----------Ris  435 (459)
                      +++++.+.+.|+ +.|    +.+..+++|+|+|+++..           ++++++++++||.+.||.          ||+
T Consensus       341 ~~~~~~~~~~L~-~~g----i~~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~  415 (447)
T PLN02607        341 RKRYEMIVQGLR-RAG----IECLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVC  415 (447)
T ss_pred             HHHHHHHHHHHH-hCC----CCcccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEE
Confidence            999999999999 887    577889999999997631           335678887899999982          999


Q ss_pred             EccCChhhHHHHHHHHHHHHhh
Q 012647          436 LAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       436 ~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                      |+..+++++++++++|.+++++
T Consensus       416 fa~~~~~~l~~gl~Ri~~~l~~  437 (447)
T PLN02607        416 FANMSEDTLEVALKRIHRFMDR  437 (447)
T ss_pred             eccCCHHHHHHHHHHHHHHHHH
Confidence            9977899999999999998864

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=1.6e-46  Score=381.16  Aligned_cols=350  Identities=15%  Similarity=0.159  Sum_probs=271.5

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHh--h-----cCCCCCCCCCcccHHHHHHHHHHHhcCCC--CccccCceEE
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLML--E-----RGENKEYLPIEGLAAFNKVTAELLFGADN--SVLKEQRVAT  154 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~--~-----~~~~~~Y~~~~g~~~lr~aia~~l~~~~~--~~~~~~~i~~  154 (459)
                      ++|+|+..++  ..-++.+.+.+.+.....+  .     -.....|.+..|.++||++||+++...+|  ..+++++|++
T Consensus        47 g~i~l~~aEN--~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivi  124 (496)
T PLN02376         47 GIIQMGLAEN--QLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVM  124 (496)
T ss_pred             ceEEeecchh--hhhHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEE
Confidence            6999999875  1111222344443322211  0     01124588889999999999999987767  5688999999


Q ss_pred             eecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh-hCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCc
Q 012647          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGS  230 (459)
Q Consensus       155 ~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~  230 (459)
                        |+|++++++++  +...+.|||.|++++|+|+.|...+. ..|++++++|++.++++++|++.+++++..   ...++
T Consensus       125 --t~Ga~~al~~l--~~~l~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~  200 (496)
T PLN02376        125 --SGGATGANETI--MFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKV  200 (496)
T ss_pred             --ccchHHHHHHH--HHHhCCCCCEEEECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCe
Confidence              99999999998  44447899999999999999998887 589999999996556789999999877542   12367


Q ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-------CCeEEEEEcCC
Q 012647          231 FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-------GMELLVAQSYS  303 (459)
Q Consensus       231 ~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~S~S  303 (459)
                      ++++++|||||||.+++.+++++|+++|++||++||+||+|.++.+++.  +..++..+...       .+++++++|||
T Consensus       201 k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~--~~~si~~l~~~~~~~~~~~~~v~vv~S~S  278 (496)
T PLN02376        201 KGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGG--DFVSVAEVVNDVDISEVNVDLIHIVYSLS  278 (496)
T ss_pred             eEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCC--CcccHHHhhccccccccCCCeEEEEEecc
Confidence            8888899999999999999999999999999999999999999887542  23444444321       13577899999


Q ss_pred             cCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012647          304 KNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKL  383 (459)
Q Consensus       304 K~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l  383 (459)
                      |.||+||+|+||+++  .++.    +.+.+....  .+..++.+.|.++..+|+++.+.   ++++++.+++++++++.+
T Consensus       279 K~~glpGlRvG~li~--~~~~----l~~~~~~~~--~~~~vs~~~Q~a~~~~L~d~~~~---~~~l~~~r~~l~~r~~~l  347 (496)
T PLN02376        279 KDMGLPGFRVGIVYS--FNDS----VVSCARKMS--SFGLVSSQTQLMLASMLSDDQFV---DNFLMESSRRLGIRHKVF  347 (496)
T ss_pred             ccCCCCcceEEEEEE--CCHH----HHHHHHHHh--hcCCCCHHHHHHHHHHhCChhHH---HHHHHHHHHHHHHHHHHH
Confidence            999999999999954  4444    333322222  22357889999999999987653   456788899999999999


Q ss_pred             HHHHhhccCCCCCcccccCCcceeeecCCC------------HHHHHHHHhcccEEEcCCC----------cEEEccCCh
Q 012647          384 FDSLSAKDKSGKDWSFILRQIGMFSFTGLN------------KAQSDNMTNKWHVYMTKDG----------RISLAGLSL  441 (459)
Q Consensus       384 ~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~------------~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~  441 (459)
                      .+.|+ +.|    +.+..+++|+|+|+++.            .++++.+++++||.+.||.          ||+|+..++
T Consensus       348 ~~~L~-~~g----i~~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~~~~  422 (496)
T PLN02376        348 TTGIK-KAD----IACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFANMDD  422 (496)
T ss_pred             HHHHH-HCC----CcccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeCCCH
Confidence            99999 876    57888999999999762            2346677887899999972          999997688


Q ss_pred             hhHHHHHHHHHHHHhh
Q 012647          442 AKCEYLADAIIDSYHN  457 (459)
Q Consensus       442 e~i~~~~~~l~~~~~~  457 (459)
                      ++++.++++|++++.+
T Consensus       423 ~~l~~al~rl~~~l~~  438 (496)
T PLN02376        423 DTLHVALGRIQDFVSK  438 (496)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998853

>PRK07683 aminotransferase A; Validated

Probab=100.00  E-value=1.1e-46  Score=374.72  Aligned_cols=353  Identities=16%  Similarity=0.167  Sum_probs=284.9

Q ss_pred             CCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCc
Q 012647           67 PDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSV  146 (459)
Q Consensus        67 ~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~  146 (459)
                      +..+.+....+.  ..+++|+|+.|.|    ..++ ++.+.+++.+.+... ...|++..|.++||+++++++...+|..
T Consensus        14 ~~~~~~~~~~~~--~~~~~i~l~~~~p----~~~~-~~~~~~a~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~l~~~~g~~   85 (387)
T PRK07683         14 ISGIRQFSNMVQ--NYDNLISLTIGQP----DFPT-PSHVKEAAKRAITEN-YTSYTHNAGLLELRKAACNFVKDKYDLH   85 (387)
T ss_pred             ccHHHHHHHHHH--hcCCeEEecCCCC----CCCC-CHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence            444444444443  2357899999987    3443 678899999888654 3789899999999999999998777887


Q ss_pred             cccC-ceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc
Q 012647          147 LKEQ-RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA  225 (459)
Q Consensus       147 ~~~~-~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~  225 (459)
                      ++++ +|++  |+|+++++.++.  ...+.+||+|++++|+|..|...++..|++++++|.+ ++++.+|.+.+++.+++
T Consensus        86 ~~~~~~I~~--t~G~~~al~~~~--~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~l~~~~~~  160 (387)
T PRK07683         86 YSPESEIIV--TIGASEAIDIAF--RTILEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDTR-STGFRLTAEALENAITE  160 (387)
T ss_pred             CCCCCcEEE--eCChHHHHHHHH--HHhCCCCCEEEEcCCCccchHHHHHHcCCEEEEeecC-cccCCCCHHHHHHhcCc
Confidence            8888 9999  999999999984  3346799999999999999999999999999999985 45677899999998875


Q ss_pred             CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC
Q 012647          226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (459)
Q Consensus       226 ~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (459)
                         +++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.   ..++..+.+..+++++++||||.
T Consensus       161 ---~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~---~~~~~~~~~~~~~vi~~~s~SK~  234 (387)
T PRK07683        161 ---KTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQP---HTSIAHFPEMREKTIVINGLSKS  234 (387)
T ss_pred             ---CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCC---cCChhhccCCcCCeEEEeecccc
Confidence               677888899999999999999999999999999999999999999986531   22333332334689999999999


Q ss_pred             cccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          306 LGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD  385 (459)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  385 (459)
                      ||+||+|+||+++   +++.++++...    ......+++.++|.++..+|.++.      .++++.+++++++++.+.+
T Consensus       235 ~~~pGlRiG~i~~---~~~l~~~~~~~----~~~~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~  301 (387)
T PRK07683        235 HSMTGWRIGFLFA---PSYLAKHILKV----HQYNVTCASSISQYAALEALTAGK------DDAKMMRHQYKKRRDYVYN  301 (387)
T ss_pred             ccCccceeEEEEc---CHHHHHHHHHH----HHhccCCCChHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHH
Confidence            9999999999976   77755555443    223334567788999988887652      2367888999999999999


Q ss_pred             HHhhccCCCCCcccccCCcceeeecCC-----C-HHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHH
Q 012647          386 SLSAKDKSGKDWSFILRQIGMFSFTGL-----N-KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLAD  449 (459)
Q Consensus       386 ~L~~~~g~~~~~~~~~~~~g~f~~~~l-----~-~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~  449 (459)
                      .|. +.+    +.+..+++|+|+|+.+     + .+++.++++++||.+.||.          ||+++. ++++++++++
T Consensus       302 ~l~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~-~~~~~~~al~  375 (387)
T PRK07683        302 RLI-SMG----LDVEKPTGAFYLFPSIGHFTMSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAY-SIETLKEGLD  375 (387)
T ss_pred             HHH-HcC----CcccCCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHH
Confidence            999 776    5778899999999743     2 3556777888899999972          999998 8999999999


Q ss_pred             HHHHHHhh
Q 012647          450 AIIDSYHN  457 (459)
Q Consensus       450 ~l~~~~~~  457 (459)
                      +|.+++.+
T Consensus       376 ~l~~~l~~  383 (387)
T PRK07683        376 RLEAFLQQ  383 (387)
T ss_pred             HHHHHHHh
Confidence            99998865

>PRK08912 hypothetical protein; Provisional

Probab=100.00  E-value=9.1e-47  Score=375.75  Aligned_cols=340  Identities=18%  Similarity=0.166  Sum_probs=272.5

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccC-ceEEeecccch
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT  161 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt  161 (459)
                      +++++|+.|.|    ..+. ++.+.+++.+.+.... .+|++..|.++||+++++++...+|..++++ +|++  |+|++
T Consensus        26 ~~~i~l~~g~p----~~~~-p~~~~~~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~--t~G~~   97 (387)
T PRK08912         26 HGAINLGQGFP----DDPG-PEDVRRAAADALLDGS-NQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMV--TSGAT   97 (387)
T ss_pred             CCeEEccCCCC----CCCC-CHHHHHHHHHHHhcCC-CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEE--eCCcH
Confidence            57899999998    3333 6677887777665443 7899999999999999999987778888888 9999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      +++.++  +...+.+||+|++++|+|..|...++..|++++.+|++ ++++++|++.+++.+.+   +++++++++||||
T Consensus        98 ~al~~~--~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~l~~~~~~---~~~~v~l~~p~NP  171 (387)
T PRK08912         98 EALAAA--LLALVEPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLE-PPHWRLPRAALAAAFSP---RTKAVLLNNPLNP  171 (387)
T ss_pred             HHHHHH--HHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecC-cccCcCCHHHHHHHhCc---cceEEEEeCCCCC
Confidence            999887  44446799999999999999999999999999999984 34688999999998875   6778888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+++.+++++|+++|++|+++||+||+|.++.+++.  ...++..+....+++++++||||.||++|+|+||+++   
T Consensus       172 tG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~---  246 (387)
T PRK08912        172 AGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGR--RHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCA---  246 (387)
T ss_pred             cCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCC--CCcChhhCCCccCceEEEeechhhccCcCceeEEEec---
Confidence            99999999999999999999999999999999887531  1222222222236899999999999999999999966   


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  401 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  401 (459)
                      +++.++.+...    ......+.+...|.++...|...      .+++++.+++++++++.+.+.|+ +.|    +++.+
T Consensus       247 ~~~~~~~l~~~----~~~~~~~~~~~~q~~~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~  311 (387)
T PRK08912        247 APPLLRVLAKA----HQFLTFTTPPNLQAAVAYGLGKP------DDYFEGMRADLARSRDRLAAGLR-RIG----FPVLP  311 (387)
T ss_pred             CHHHHHHHHHH----HhhccccCChHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHHHHHHH-hCC----CcccC
Confidence            77755554432    22222244555677776666432      23357888999999999999999 876    57788


Q ss_pred             CCcceeeecCCC-------H-HHHHHHHhcccEEEcCC----------C--cEEEccCChhhHHHHHHHHHHHHhh
Q 012647          402 RQIGMFSFTGLN-------K-AQSDNMTNKWHVYMTKD----------G--RISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       402 ~~~g~f~~~~l~-------~-~~~~~ll~~~gI~v~~g----------g--Ris~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                      +++|||+|+.+.       . ++++.+++++||.+.||          +  ||+|+. +++++++++++|.+++++
T Consensus       312 ~~g~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~-~~~~l~~~l~rl~~~l~~  386 (387)
T PRK08912        312 SQGTYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAK-RDATLDEAVERLAAARRR  386 (387)
T ss_pred             CCcceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeC-CHHHHHHHHHHHHHHHhc
Confidence            899999997652       2 45777777789999986          1  999998 789999999999998764

>PRK08361 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2.1e-46  Score=373.46  Aligned_cols=343  Identities=16%  Similarity=0.160  Sum_probs=281.0

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      +++|+|+.|.|    ..++ ++.+.+++.+.+.... ..|.|..|.++||+++|+++...+|..+++++|++  |+|+++
T Consensus        33 ~~~i~l~~~~~----~~~~-~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~  104 (391)
T PRK08361         33 ENVISLGIGEP----DFDT-PKNIKEAAKRALDEGW-THYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIV--TAGAYE  104 (391)
T ss_pred             cCeEEcCCCCC----CCCC-CHHHHHHHHHHHhcCC-CCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEE--eCChHH
Confidence            57899999998    4443 7888898888776543 67989999999999999998776777788999999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT  242 (459)
                      ++.++.  ...+.+||+|++++|+|..+...++..|++++.+|++++.++.+|++.+++.+++   +++++++++|||||
T Consensus       105 al~~~~--~~l~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~---~~~~v~i~~p~NPt  179 (391)
T PRK08361        105 ATYLAF--ESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITK---RTRMIVINYPNNPT  179 (391)
T ss_pred             HHHHHH--HHhcCCCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhccc---ccEEEEEeCCCCCC
Confidence            999984  3346799999999999999999999999999999996555688999999999876   67788889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCC
Q 012647          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (459)
Q Consensus       243 G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (459)
                      |.+++.+++++|+++|+++++++|+||+|.++.+++.  ...++..+  ..+++++++||||.||++|+|+||+++   +
T Consensus       180 G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~--~~~~~i~~~s~SK~~~~~GlRiG~~~~---~  252 (391)
T PRK08361        180 GATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGA--KHYPMIKY--APDNTILANSFSKTFAMTGWRLGFVIA---P  252 (391)
T ss_pred             CcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCC--CCCCHhhc--CCCCEEEEecCchhcCCcHhhhhhhcc---C
Confidence            9999999999999999999999999999999876431  12222221  235799999999999999999999966   7


Q ss_pred             hhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC
Q 012647          323 SDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR  402 (459)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~  402 (459)
                      ++.++.+..    .......+++.+.|.++..+|+++.+.    +++++.++.++++++.+.+.|+ +++   ++.+..+
T Consensus       253 ~~~~~~~~~----~~~~~~~~~~~~~q~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~L~-~~~---~~~~~~p  320 (391)
T PRK08361        253 EQVIKDMIK----LHAYIIGNVASFVQIAGIEALRSKESW----KAVEEMRKEYNERRKLVLKRLK-EMP---HIKVFEP  320 (391)
T ss_pred             HHHHHHHHH----HHhhhccCCChHHHHHHHHHhcCCccc----HHHHHHHHHHHHHHHHHHHHHH-hCC---CCeecCC
Confidence            775554433    222233467788899998899876442    4578899999999999999999 762   2678889


Q ss_pred             CcceeeecCC-----C-HHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          403 QIGMFSFTGL-----N-KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       403 ~~g~f~~~~l-----~-~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      ++|+|+|+.+     + .++++.+++++||.+.||.          ||+++. ++++++.++++|+++++++
T Consensus       321 ~g~~~~~~~l~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~al~~l~~~l~~~  391 (391)
T PRK08361        321 KGAFYVFANIDETGMSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYAT-SKEKLIEAMERMEKALEEL  391 (391)
T ss_pred             CEEEEEEEECCCCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHhcC
Confidence            9999999754     2 3556677777899999862          999997 7889999999999998764

>PRK05764 aspartate aminotransferase; Provisional

Probab=100.00  E-value=4.5e-46  Score=371.83  Aligned_cols=367  Identities=20%  Similarity=0.223  Sum_probs=294.3

Q ss_pred             ccCCCCCCCCCccchhHHHhhh--CCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHH
Q 012647           58 RFEGVTMAPPDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVT  135 (459)
Q Consensus        58 ~~~~~~~~~~~~i~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~ai  135 (459)
                      +++++...+++++.++.+.++.  ...+.+++|+.|.|    ..++ ++.+.+++.+.+.... ..|++..|.++||+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~-~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~i   77 (393)
T PRK05764          4 LSKRVSRVTPSATLAVTAKAKELKAQGRDVISLGAGEP----DFDT-PEHIKEAAIEALDDGK-TKYTPAAGIPELREAI   77 (393)
T ss_pred             hhhhhhhcCchHHHHHHHHHHHHHhccCCEEEeCCCCC----CCCC-CHHHHHHHHHHHhcCC-CCcCCCCChHHHHHHH
Confidence            3556666667776555543331  22467999999998    4443 7889999888876543 5799999999999999


Q ss_pred             HHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCC
Q 012647          136 AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD  215 (459)
Q Consensus       136 a~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d  215 (459)
                      ++++...++..+++++|++  |+|+++++.++  +...+.+||+|++++|+|..|...++.+|++++.+|+++++++.+|
T Consensus        78 a~~~~~~~~~~~~~~~i~~--~~g~~~a~~~~--~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d  153 (393)
T PRK05764         78 AAKLKRDNGLDYDPSQVIV--TTGAKQALYNA--FMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLT  153 (393)
T ss_pred             HHHHHHHhCCCCCHHHEEE--eCCcHHHHHHH--HHHhcCCCCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCC
Confidence            9999877777778999999  99999999987  3444779999999999999999999999999999999655578899


Q ss_pred             HHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH-HhcCC
Q 012647          216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF-ATRGM  294 (459)
Q Consensus       216 ~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~-~~~~~  294 (459)
                      ++.+++.+++   +++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+ .+..+
T Consensus       154 ~~~l~~~l~~---~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~  228 (393)
T PRK05764        154 VEQLEAAITP---KTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGA--EFTSIASLSPELRD  228 (393)
T ss_pred             HHHHHHhhCc---cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCC--CcccHHHcCCCCcC
Confidence            9999999865   677888899999999999999999999999999999999999999886431  12233333 23346


Q ss_pred             eEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 012647          295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAG  374 (459)
Q Consensus       295 ~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~  374 (459)
                      ++++++||||.++++|+|+||+++   +++..+.+    .......+.+++.++|.++..+|++.      .+++++.++
T Consensus       229 ~~i~~~s~SK~~~~~G~RiG~i~~---~~~~~~~~----~~~~~~~~~~~~~~~q~~~~~~l~~~------~~~~~~~~~  295 (393)
T PRK05764        229 RTITVNGFSKAYAMTGWRLGYAAG---PKELIKAM----SKLQSHSTSNPTSIAQYAAVAALNGP------QDEVEEMRQ  295 (393)
T ss_pred             CEEEEecCcccccCccceeEEEec---CHHHHHHH----HHHHhhcccCCChHHHHHHHHHHcCC------hHHHHHHHH
Confidence            899999999999999999999965   78854444    33333445577888888888888631      234678888


Q ss_pred             HHHHHHHHHHHHHhhcc-CCCCCcccccCCcceeeecCCC----------HHHHHHHHhcccEEEcCCC--------cEE
Q 012647          375 RIKNVRQKLFDSLSAKD-KSGKDWSFILRQIGMFSFTGLN----------KAQSDNMTNKWHVYMTKDG--------RIS  435 (459)
Q Consensus       375 ~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~g~f~~~~l~----------~~~~~~ll~~~gI~v~~gg--------Ris  435 (459)
                      .++++++.+.+.|+ ++ |    +.+..++||+|+|+.+.          .++.+.+++++||.+.||.        |||
T Consensus       296 ~~~~~~~~l~~~L~-~~~g----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis  370 (393)
T PRK05764        296 AFEERRDLMVDGLN-EIPG----LECPKPEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLS  370 (393)
T ss_pred             HHHHHHHHHHHHHh-hCCC----CcccCCCcceEEEEecccccccccCCHHHHHHHHHHhCCEEEccccccCCCCEEEEE
Confidence            99999999999999 87 4    67788999999997542          4556788887899999873        999


Q ss_pred             EccCChhhHHHHHHHHHHHHhhc
Q 012647          436 LAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       436 ~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      ++. +++++++++++|.++++++
T Consensus       371 ~~~-~~~~~~~~i~~l~~~~~~~  392 (393)
T PRK05764        371 YAT-SLEDLEEGLERIERFLESL  392 (393)
T ss_pred             ecC-CHHHHHHHHHHHHHHHHhh
Confidence            998 8999999999999998865

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=100.00  E-value=3e-46  Score=374.22  Aligned_cols=339  Identities=17%  Similarity=0.153  Sum_probs=266.2

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC----CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeec
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG----ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~----~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (459)
                      ++++++|+.|+|    ..++ ++.+.+++.+.+...    ....|.+..|.++||+++|+++...+|..+++++|++  |
T Consensus        33 ~~~~i~l~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~i--t  105 (409)
T PRK07590         33 EAKIIRLGIGDV----TQPL-PPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFI--S  105 (409)
T ss_pred             CCceEEecCcCC----CCCC-CHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEE--C
Confidence            467999999998    4443 778888888877541    2368999999999999999998888888899999999  9


Q ss_pred             ccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCC-----------eeeeeeecCCCCCCCHHHHHHHHHcC
Q 012647          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVP-----------WSEYRYYDPKTVGLDFEGMIADIKAA  226 (459)
Q Consensus       158 ~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~-----------v~~v~~~~~~~~~~d~e~l~~~i~~~  226 (459)
                      +|+++++.++   ...+.+||+|++++|+|..|...++..|++           ++++|+++++++.+|++.        
T Consensus       106 ~Ga~~al~~l---~~~~~~gd~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~--------  174 (409)
T PRK07590        106 DGAKCDTGNI---LDIFGPDNTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELPE--------  174 (409)
T ss_pred             CCHHHHHHHH---HHhcCCCCEEEEeCCCCcchHHHHHHcCCcccccccccccceeEeecccccCCcccCcc--------
Confidence            9999999885   344679999999999999999999999987           899998544445555331        


Q ss_pred             CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc
Q 012647          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (459)
Q Consensus       227 ~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  306 (459)
                       ++++++++||||||||.++|.+++++|+++|++||++||+||+|.++.+++.  ...++..+....+++++++||||.|
T Consensus       175 -~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~--~~~~~~~~~~~~~~vi~~~SfSK~~  251 (409)
T PRK07590        175 -EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPS--LPHSIYEIEGARECAIEFRSFSKTA  251 (409)
T ss_pred             -cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCC--CCcchhhCCCcccceEEEecCcccc
Confidence             2677888899999999999999999999999999999999999999986531  1122322211234799999999999


Q ss_pred             ccCCCCcceEEEEeCChhHHHHH--------HHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012647          307 GLYAERIGAMNVVCSSSDLAARV--------KSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  378 (459)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  378 (459)
                      |+||+|+||+++   ++++++.+        ...........+.+++.++|.++..+|.+..     .+++++.++.+++
T Consensus       252 ~~pGlRiG~~i~---~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~-----~~~~~~~~~~~~~  323 (409)
T PRK07590        252 GFTGTRCAYTVV---PKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEG-----KAQIKELIDYYME  323 (409)
T ss_pred             CCcCceeEEEEc---CHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCc-----HHHHHHHHHHHHH
Confidence            999999999976   77755421        0111111122233578889999888887532     2346788999999


Q ss_pred             HHHHHHHHHhhccCCCCCcccccCCcceeeecCC----C-HHHHHHHHhcccEEEcCCC----------cEEEccCChhh
Q 012647          379 VRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----N-KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAK  443 (459)
Q Consensus       379 ~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l----~-~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~  443 (459)
                      +++.+.+.|+ ++|    +.+..+.+|+|+|+.+    + .+++..+++++||.+.||.          ||++.. ++++
T Consensus       324 ~r~~l~~~L~-~~~----~~~~~~~g~~f~wi~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~  397 (409)
T PRK07590        324 NAKIIREGLE-SAG----FEVYGGVNAPYIWVKTPDGMSSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAFG-SREN  397 (409)
T ss_pred             HHHHHHHHHH-hcC----CceecCCcceEEEEECCCCCCHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEccC-CHHH
Confidence            9999999999 876    5777788999999875    2 3567788887899999872          999765 8899


Q ss_pred             HHHHHHHHHHHH
Q 012647          444 CEYLADAIIDSY  455 (459)
Q Consensus       444 i~~~~~~l~~~~  455 (459)
                      ++.++++|.+++
T Consensus       398 l~~~l~rl~~~~  409 (409)
T PRK07590        398 VLEAMERIKKAL  409 (409)
T ss_pred             HHHHHHHHHhhC
Confidence            999999998753

>PRK09082 methionine aminotransferase; Validated

Probab=100.00  E-value=1.7e-46  Score=373.38  Aligned_cols=336  Identities=14%  Similarity=0.154  Sum_probs=273.8

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccC-ceEEeecccch
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT  161 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt  161 (459)
                      .++|+|+.|.|    ..++ ++.+.+++.+.+.... ..|.+..|.+++|+++++++...++...+++ +|++  |+|++
T Consensus        30 ~~~i~l~~g~~----~~~~-~~~~~~~~~~~~~~~~-~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~--t~G~~  101 (386)
T PRK09082         30 HGAINLSQGFP----DFDG-PPYLVEALAYAMAAGH-NQYPPMTGVAALREAIAAKTARLYGRQYDADSEITV--TAGAT  101 (386)
T ss_pred             CCEEEecCCCC----CCCC-CHHHHHHHHHHHHcCC-CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEE--eCCHH
Confidence            57899999988    3433 6788888888776543 7899999999999999999887777766665 7999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      +++.++.  ...+.+||+|++++|+|..|...++..|++++.+|++ ++++.+|++++++.+++   +++++++++||||
T Consensus       102 ~al~~~~--~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~~~~---~~~~v~l~~p~NP  175 (386)
T PRK09082        102 EALFAAI--LALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQ-PPDFRVDWQRFAAAISP---RTRLIILNTPHNP  175 (386)
T ss_pred             HHHHHHH--HHHcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecC-cccccCCHHHHHHhcCc---cceEEEEeCCCCC
Confidence            9999983  4447799999999999999999999999999999995 34689999999999875   6778888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+++++++++|+++|++||+++|+||+|.++.+++.  ...++..+....+++++++||||.||++|+|+||+++   
T Consensus       176 tG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~--~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~---  250 (386)
T PRK09082        176 SGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGA--GHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVA---  250 (386)
T ss_pred             CCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCC--CCCChhhCcCccCcEEEEeechhhccchhhhhhhhhC---
Confidence            99999999999999999999999999999999987531  1223333323346899999999999999999999965   


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  401 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  401 (459)
                      ++++++.+.+.    ......+++.++|.++..++++.      .+++++.++.++++++.+.+.|+ +.+    +++.+
T Consensus       251 ~~~l~~~~~~~----~~~~~~~~~~~~q~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~L~-~~~----~~~~~  315 (386)
T PRK09082        251 PAALSAEFRKV----HQYNTFTVNTPAQLALADYLRAE------PEHYLELPAFYQAKRDRFRAALA-NSR----FKLLP  315 (386)
T ss_pred             CHHHHHHHHHH----HhhhcCCCChHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHHHHHHH-hCC----CcccC
Confidence            77855554443    32333467888999888888632      23467788999999999999999 776    67888


Q ss_pred             CCcceeeecCC------C-HHHHHHHHhcccEEEcCCC------------cEEEccCChhhHHHHHHHHHH
Q 012647          402 RQIGMFSFTGL------N-KAQSDNMTNKWHVYMTKDG------------RISLAGLSLAKCEYLADAIID  453 (459)
Q Consensus       402 ~~~g~f~~~~l------~-~~~~~~ll~~~gI~v~~gg------------Ris~~~~~~e~i~~~~~~l~~  453 (459)
                      +++|+|+|+.+      + .++++.|++++||.+.||.            |||++. +++++++++++|++
T Consensus       316 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~-~~~~l~~~~~rl~~  385 (386)
T PRK09082        316 CEGTYFQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAK-QEETLDAAAERLCQ  385 (386)
T ss_pred             CCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecC-CHHHHHHHHHHHhh
Confidence            99999999753      2 3556778888899998872            999998 88999999999875

>PRK08637 hypothetical protein; Provisional

Probab=100.00  E-value=1.5e-45  Score=366.69  Aligned_cols=362  Identities=21%  Similarity=0.262  Sum_probs=275.6

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccc---cCceEEeeccc
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLK---EQRVATVQGLS  159 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~---~~~i~~~~t~g  159 (459)
                      .+++|.++|.+.+. +.+.+.+.+.+++.+... ....+|++..|.++||+++++++...++ ...   .++|++  |+|
T Consensus         3 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~Y~~~~G~~~lr~~ia~~~~~~~~-~~~~~~~~~I~i--t~G   77 (388)
T PRK08637          3 ATKYNATIGMATEK-GGPMYLSSLQDLLNDLTP-DEIFPYAPPQGIPELRDLWQEKMLRENP-SLSGKKMSLPIV--TNA   77 (388)
T ss_pred             ccceecceeeEecC-CCcchHHHHHHHHHhhcc-ccccCCCCCCCCHHHHHHHHHHHhccCc-cccccccceeeE--ccc
Confidence            36789999998444 444545666666665332 3348899999999999999999876543 222   257888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh-hCCCCeeeeeeecCCCCCCCHHHHHHHHHc-CCCCcEEEEeCC
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEYRYYDPKTVGLDFEGMIADIKA-APGGSFILLHGC  237 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~-~~~~~~~ii~~~  237 (459)
                      +++++.++..  ..+.|||+|++++|+|+.|...+. ..|++++.+|+.. +++++|++.+++.++. .++.+++++++|
T Consensus        78 ~~~al~~~~~--~l~~~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~-~~~~~d~~~l~~~~~~~~~~~~~~~~~~~  154 (388)
T PRK08637         78 LTHGLSLVAD--LFVDQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFD-EDGGFDTDALKEALQAAYNKGKVIVILNF  154 (388)
T ss_pred             hHHHHHHHHH--HhcCCCCEEEEcCCCCccHHHHHHHhcCCEEEEecccC-CCCcCCHHHHHHHHHhhccCCCEEEEEeC
Confidence            9999999843  336799999999999999998765 6899999999842 3467999999999871 123567788999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHh-----cCCeeEEeccCCCCCCCCCCCChhHH-HHHHhcCCeE--EEEEcCCcCcccC
Q 012647          238 AHNPTGIDPTPEQWEKIADVIQE-----KNHIPFFDVAYQGFASGSLDNDASSV-RLFATRGMEL--LVAQSYSKNLGLY  309 (459)
Q Consensus       238 p~NPTG~~~s~~~l~~i~~l~~~-----~~~~ii~Deay~~~~~~~~~~~~~~~-~~~~~~~~~~--i~~~S~SK~~~~~  309 (459)
                      ||||||.++|.+++++|+++|++     |+++||+||+|.++.+++.  ...++ ..+.+..+++  ++++||||.|++|
T Consensus       155 P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~--~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~p  232 (388)
T PRK08637        155 PNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDS--YKESLFAALANLHSNILAVKLDGATKEEFVW  232 (388)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCc--cchhhHHHhhcccccceEEEeccccccCCCc
Confidence            99999999999999999999875     8999999999999987542  12222 2223334464  4567999999999


Q ss_pred             CCCcceEEEEe---CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          310 AERIGAMNVVC---SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDS  386 (459)
Q Consensus       310 G~RiG~~~~v~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  386 (459)
                      |+|+||+++..   .+++..+.+...+....+....+++.++|.++..+|+++.+    .+++++.+..++++++.+.+.
T Consensus       233 GlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~----~~~~~~~~~~~~~r~~~~~~~  308 (388)
T PRK08637        233 GFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPEF----DKEKQEKFQILKERYEKTKEV  308 (388)
T ss_pred             ccceEEEEEccccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            99999995411   24665555544332222223347888999999999988654    456778888899999999999


Q ss_pred             HhhccCCCCCcccccCCcceeeecCCC----HHHHHHHHhcccEEEcCCC----cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          387 LSAKDKSGKDWSFILRQIGMFSFTGLN----KAQSDNMTNKWHVYMTKDG----RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       387 L~~~~g~~~~~~~~~~~~g~f~~~~l~----~~~~~~ll~~~gI~v~~gg----Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      |+ +.+.+..+.+.++++|+|+|+.+.    .++++++++++||.+.+.+    ||+++..+++++++++++|.++++.+
T Consensus       309 l~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~l~~~l~~~~gv~~~~~~~~~iRi~~~~~~~~~i~~~~~~l~~~~~~~  387 (388)
T PRK08637        309 LY-DGKYDDAWQAYPFNSGYFMCLKLKGVDAEELRVHLLEKYGIGTIALNETDLRIAFSCVEEEDIPELFDSIYKAIKDL  387 (388)
T ss_pred             HH-hhCCCCCcccccccceEEEEecCChHHHHHHHHHHhhhcceEEEeccCCceEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence            98 664344478888999999998764    3456777777899887643    99999888999999999999999876


Q ss_pred             C
Q 012647          459 S  459 (459)
Q Consensus       459 ~  459 (459)
                      +
T Consensus       388 ~  388 (388)
T PRK08637        388 R  388 (388)
T ss_pred             C
Confidence            4

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.9e-45  Score=337.56  Aligned_cols=367  Identities=15%  Similarity=0.142  Sum_probs=300.5

Q ss_pred             CccchhHHHhhh----CCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCC
Q 012647           68 DPILGVSEAFKA----DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGAD  143 (459)
Q Consensus        68 ~~i~~~~~~~~~----~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~  143 (459)
                      .+++++...+..    +....+|.|+.|+|--..-++ ..+...+|+.+++..+..+.|+|..|....|+++|+|+++..
T Consensus        42 ~tir~i~~~l~~~~~p~~~k~iipl~~GDPsv~~~~~-ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l  120 (447)
T KOG0259|consen   42 VTIRGILSALFDCCDPEKKKPILPLGHGDPSVYPCFR-TSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDL  120 (447)
T ss_pred             ccHHHHHHHHhhcCCcccCceeccCCCCCCCcccccc-CCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCC
Confidence            345555544432    222368999999994333333 478999999999988878999999999999999999998888


Q ss_pred             CCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHH
Q 012647          144 NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI  223 (459)
Q Consensus       144 ~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i  223 (459)
                      ...+++++|++  |+|.++|++++.  ..+.+||..|++|.|+|+-|...+...|.+++++++.++++|.+|++.+++.+
T Consensus       121 ~~kl~a~DV~l--tsGC~qAIe~~i--~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~  196 (447)
T KOG0259|consen  121 PNKLTADDVVL--TSGCSQAIELAI--SSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALA  196 (447)
T ss_pred             CCccCcCceEE--eccchHHHHHHH--HHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhh
Confidence            78889999999  999999999994  44457999999999999999999999999999999988999999999999999


Q ss_pred             HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCC
Q 012647          224 KAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS  303 (459)
Q Consensus       224 ~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S  303 (459)
                      ++   +|+.+++.|||||+|.++|.+.+++|+++|++++++||.||+|.++.|++  ....++..| ...--++.++|.|
T Consensus       197 DE---NT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~--~pfvpmg~f-ssiVPVitlggis  270 (447)
T KOG0259|consen  197 DE---NTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGD--KPFVPMGKF-SSIVPVITLGGIS  270 (447)
T ss_pred             cc---CeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCC--CCccchhhc-cccCceEeecccc
Confidence            87   89999999999999999999999999999999999999999999999986  344454444 2334689999999


Q ss_pred             cCcccCCCCcceEEEEeCChhHHH--HHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 012647          304 KNLGLYAERIGAMNVVCSSSDLAA--RVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQ  381 (459)
Q Consensus       304 K~~~~~G~RiG~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~  381 (459)
                      |-|-.||||+||++. ..+.....  .+.+.+....+ ...+++++.|.+.-.+|+...     ++++......++.+.+
T Consensus       271 KrW~VPGWRlGWi~~-hD~~gvf~~~~~~q~~~~~~~-~~~~p~TiiQ~AlP~IL~kTp-----~efF~k~~~~lk~na~  343 (447)
T KOG0259|consen  271 KRWIVPGWRLGWIAL-HDPRGVFRDTKVVQGIKNFLD-IIPGPATIIQGALPDILEKTP-----EEFFDKKLSFLKSNAD  343 (447)
T ss_pred             cccccCCceeeeEEE-ecccccccchHHHHHHHHHHh-ccCCccHhHHHHhHHHHHhCh-----HHHHHHHHHHHHhhHH
Confidence            999999999999965 22222110  01122222222 245889999999988887532     4567888999999999


Q ss_pred             HHHHHHhhccCCCCCcc-cccCCcceeeecCC----------CHHHHHHHHhcccEEEcCCC--------cEEEccCChh
Q 012647          382 KLFDSLSAKDKSGKDWS-FILRQIGMFSFTGL----------NKAQSDNMTNKWHVYMTKDG--------RISLAGLSLA  442 (459)
Q Consensus       382 ~l~~~L~~~~g~~~~~~-~~~~~~g~f~~~~l----------~~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e  442 (459)
                      ..++.|+ +.+  + +. ...|+|.+|+|+++          +.+|+++|.+|..+.+.||-        ||+++. ..+
T Consensus       344 l~y~~Lk-~IP--~-l~cp~kPeg~mylmv~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~i~~-~~~  418 (447)
T KOG0259|consen  344 LCYSRLK-DIP--C-LTCPVKPEGCMYLMVKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIVITV-EEE  418 (447)
T ss_pred             HHHHHHh-cCC--C-cccCcCCCcceEEEeccchhhhccccccHHHHHHHhhhcceEEeccccccCCCeEEEEEcc-ChH
Confidence            9999999 763  2 45 67899999999876          45789999999999999993        999998 889


Q ss_pred             hHHHHHHHHHHHHhh
Q 012647          443 KCEYLADAIIDSYHN  457 (459)
Q Consensus       443 ~i~~~~~~l~~~~~~  457 (459)
                      .+++++++|++++.+
T Consensus       419 ~leea~~Rik~Fc~R  433 (447)
T KOG0259|consen  419 MLEEAFSRIKEFCDR  433 (447)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998865

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=100.00  E-value=1.5e-45  Score=368.44  Aligned_cols=366  Identities=16%  Similarity=0.138  Sum_probs=286.0

Q ss_pred             cchhHHHhhhC--CCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCcc
Q 012647           70 ILGVSEAFKAD--TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVL  147 (459)
Q Consensus        70 i~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~  147 (459)
                      |.++.+.+++.  .+.++++|+.|.|--....+ +++.+.+++.+.+.......|.+..|.+++|+++++++....+..+
T Consensus        16 ~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~-~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~   94 (403)
T TIGR01265        16 IRAIVDNLKVKPNPEKPIIPLSHGDPSVFGNLR-TDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKL   94 (403)
T ss_pred             HHHHHHHHHHHHhcCCCeEEeCCCCCCccCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCC
Confidence            44555444432  24689999999981001123 3788999999888654446798999999999999999987777777


Q ss_pred             ccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCC
Q 012647          148 KEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP  227 (459)
Q Consensus       148 ~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~  227 (459)
                      ++++|++  |+|+|+++.++...  .+.+||+|++++|+|..|...++..|++++.+++.+++++++|++.+++.+++  
T Consensus        95 ~~~~ii~--t~G~t~al~~~~~~--l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~--  168 (403)
T TIGR01265        95 TADDVVL--TSGCSQAIEICIEA--LANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADE--  168 (403)
T ss_pred             CHHHEEE--ecChHHHHHHHHHH--hCCCCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhCc--
Confidence            8999999  99999999998433  35799999999999999999999999999999985455788999999998865  


Q ss_pred             CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc
Q 012647          228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (459)
Q Consensus       228 ~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (459)
                       +++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++  ....++..+ ....++++++||||.|+
T Consensus       169 -~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~~~~-~~~~~vi~~~S~SK~~~  244 (403)
T TIGR01265       169 -KTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGD--APFIPMASF-ASIVPVLSLGGISKRWV  244 (403)
T ss_pred             -CccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCC--CCccchhhh-ccCCcEEEEeecccccC
Confidence             67788889999999999999999999999999999999999999998753  122333333 23347999999999999


Q ss_pred             cCCCCcceEEEEeCChhH-HHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          308 LYAERIGAMNVVCSSSDL-AARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDS  386 (459)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  386 (459)
                      +||+|+||+++ ..+++. .+.+.+.+...... ..+++.++|.++..+|.+..     ..++++.+++++++++.+.+.
T Consensus       245 ~pGlRiG~~v~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~  317 (403)
T TIGR01265       245 VPGWRLGWIII-HDPHGIFRDTVLQGLKNLLQR-ILGPATIVQGALPDILENTP-----QEFFDGKISVLKSNAELCYEE  317 (403)
T ss_pred             CCcceEEEEEE-eCchhhhHHHHHHHHHHHhhh-hcCCChHHHHHHHHHHHhCh-----HHHHHHHHHHHHHHHHHHHHH
Confidence            99999999954 112222 22244444333222 33678889999988886421     345788899999999999999


Q ss_pred             HhhccCCCCCcccccCCcceeeecCCC----------HHHHHHHHhcccEEEcCCC--------cEEEccCChhhHHHHH
Q 012647          387 LSAKDKSGKDWSFILRQIGMFSFTGLN----------KAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLA  448 (459)
Q Consensus       387 L~~~~g~~~~~~~~~~~~g~f~~~~l~----------~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e~i~~~~  448 (459)
                      |+ .++   ++.+..|++|+|+|+.++          .++++++++++||.+.||.        ||||+. +++++++++
T Consensus       318 L~-~~~---~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~~-~~~~l~~~l  392 (403)
T TIGR01265       318 LK-DIP---GLVCPKPEGAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITITV-PESMLEEAC  392 (403)
T ss_pred             Hh-cCC---CceecCCCceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEecC-CHHHHHHHH
Confidence            98 762   256677899999998652          3556777777899999983        999997 788999999


Q ss_pred             HHHHHHHhhc
Q 012647          449 DAIIDSYHNV  458 (459)
Q Consensus       449 ~~l~~~~~~~  458 (459)
                      ++|.+++++.
T Consensus       393 ~~l~~~~~~~  402 (403)
T TIGR01265       393 SRIKEFCERH  402 (403)
T ss_pred             HHHHHHHHhc
Confidence            9999998764

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=100.00  E-value=5e-46  Score=374.41  Aligned_cols=348  Identities=16%  Similarity=0.195  Sum_probs=286.2

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhc--CC-CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER--GE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~--~~-~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      .+.+++|+.|.| +...+|  .....+++.+.+..  .. ...|.+..|.++||++|++++....|..+++++|++  |+
T Consensus        88 ~~~~i~f~~g~p-~~~~fp--~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~Iii--T~  162 (459)
T COG1167          88 DPSVIDFAGGLP-DPSLFP--LEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVI--TS  162 (459)
T ss_pred             CCceecCCCCCC-CcccCC--HHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEE--eC
Confidence            378999999997 333333  45666666666532  12 468888899999999999999878899999999999  99


Q ss_pred             cchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCC
Q 012647          159 SGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA  238 (459)
Q Consensus       159 ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p  238 (459)
                      |+++|++++.+++  +.|||+|++++|+|.....+++..|++++.||++   ..++|+|.|++.++.. +...++++++.
T Consensus       163 G~q~al~l~~~~l--~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d---~~G~~~e~le~~~~~~-~~k~~y~~P~~  236 (459)
T COG1167         163 GAQQALDLLLRLL--LDPGDTVLVEDPTYPGALQALEALGARVIPVPVD---EDGIDPEALEEALAQW-KPKAVYVTPTF  236 (459)
T ss_pred             CHHHHHHHHHHHh--CCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCC---CCCCCHHHHHHHHhhc-CCcEEEECCCC
Confidence            9999999985443  6699999999999999999999999999999995   4579999999999864 24567778999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012647          239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (459)
Q Consensus       239 ~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (459)
                      |||||.++|.+..++|+++|++||++||+||+|.++.+++..  .+++.. .+..++|++++||||+++ ||+|+||+++
T Consensus       237 qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p--~~~l~~-ld~~~rViy~gSFSK~l~-PglRlG~vv~  312 (459)
T COG1167         237 QNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPP--PPPLKA-LDAPGRVIYLGSFSKTLA-PGLRLGYVVA  312 (459)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCC--CCChHh-hCCCCCEEEEeeehhhcc-cccceeeeeC
Confidence            999999999999999999999999999999999999987532  223333 245679999999999998 9999999977


Q ss_pred             EeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcc
Q 012647          319 VCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWS  398 (459)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~  398 (459)
                         |++.++.+..    .+.....+++.+.|.+++.++.++.+    .++++++++.|+++++.+.+.|+ +.. |+...
T Consensus       313 ---p~~~~~~~~~----~k~~~~~~~s~~~Q~~la~~l~~G~~----~~hl~~lR~~y~~rr~~l~~~L~-~~~-~~~~~  379 (459)
T COG1167         313 ---PPELIEKLLR----LKQAADLGPSSLSQAALAAFLLSGHY----DRHLRRLRREYARRRDALLEALA-EYL-PELAT  379 (459)
T ss_pred             ---CHHHHHHHHH----HHHHhcCCCChHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHHHHHHHH-HhC-CCCee
Confidence               8885554443    33345668899999999888886655    67899999999999999999999 763 33467


Q ss_pred             cccCCcceeeecCC----CH-HHHHHHHhcccEEEcC-CC------------cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          399 FILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTK-DG------------RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       399 ~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~-gg------------Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      +..|.+|+|+|+.+    +. ++++.+++ +||.+.| |.            |++|+..+++++++++++|.+++++.
T Consensus       380 ~~~p~gG~flwl~l~~~~~~~~l~~~a~~-~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~~~~~~~  456 (459)
T COG1167         380 WTRPEGGLFLWLELPEGIDARELLAAALE-KGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAALLREA  456 (459)
T ss_pred             eecCCceEEEEEEcCCCCCHHHHHHHHHH-CCCEEEcCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence            88999999999966    33 45666666 5999988 41            99999989999999999999998763

>PRK07777 aminotransferase; Validated

Probab=100.00  E-value=1.1e-45  Score=367.88  Aligned_cols=355  Identities=14%  Similarity=0.120  Sum_probs=279.4

Q ss_pred             CCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCC
Q 012647           65 APPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADN  144 (459)
Q Consensus        65 ~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~  144 (459)
                      .++..+.++.+.+.   .+++++|+.|.|    ..+. ++.+.+++.+.+.... .+|.+..|.++||+++++++...+|
T Consensus         9 ~~~~~~~~~~~~~~---~~~~i~l~~g~p----~~~~-~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~~g   79 (387)
T PRK07777          9 FGTTIFAEMSALAV---RTGAVNLGQGFP----DEDG-PPEMLEAAQEAIAGGV-NQYPPGPGIPELRAAIAAQRRRRYG   79 (387)
T ss_pred             cCccHHHHHHHHHh---hCCeEEccCCCC----CCCC-CHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            34445555555443   357899999998    3332 4567777777665443 6798899999999999999877778


Q ss_pred             CccccC-ceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecC-CCCCCCHHHHHHH
Q 012647          145 SVLKEQ-RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP-KTVGLDFEGMIAD  222 (459)
Q Consensus       145 ~~~~~~-~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~-~~~~~d~e~l~~~  222 (459)
                      ..++++ +|++  |+|+++++.++  +...+.+||+|+++.|+|..|...++..|++++.++++++ .++.+|++++++.
T Consensus        80 ~~~~~~~~i~~--t~G~~~al~~~--~~~~~~~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~  155 (387)
T PRK07777         80 LEYDPDTEVLV--TVGATEAIAAA--VLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAA  155 (387)
T ss_pred             CCCCCCCcEEE--eCCcHHHHHHH--HHHhcCCCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHh
Confidence            777776 7999  99999999987  4444679999999999999999999999999999998654 3678999999998


Q ss_pred             HHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcC
Q 012647          223 IKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY  302 (459)
Q Consensus       223 i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~  302 (459)
                      +++   +++++++++||||||.+++.+++++|+++|++|++++|+||+|.++.+++.  ...++..+.+..+++++++||
T Consensus       156 ~~~---~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~  230 (387)
T PRK07777        156 VTP---RTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGA--RHLPLATLPGMRERTVTISSA  230 (387)
T ss_pred             cCc---ccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCC--CcccHhhCCCCcCcEEEEeec
Confidence            865   677888899999999999999999999999999999999999999887531  222333322224589999999


Q ss_pred             CcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Q 012647          303 SKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQK  382 (459)
Q Consensus       303 SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (459)
                      ||.||++|+|+||+++   ++++++.+...    ......+.+.+.|.++..++.+.      .+++++.++.++++++.
T Consensus       231 SK~~g~~GlRiG~~~~---~~~l~~~~~~~----~~~~~~~~~~~~q~~~~~~l~~~------~~~~~~~~~~~~~~~~~  297 (387)
T PRK07777        231 AKTFNVTGWKIGWACG---PAPLIAAVRAA----KQYLTYVGGAPFQPAVAHALDHE------DAWVAALRDSLQAKRDR  297 (387)
T ss_pred             hhhccCcCceeEEEec---CHHHHHHHHHH----HhhcccCCCCHHHHHHHHHHhCC------cHHHHHHHHHHHHHHHH
Confidence            9999999999999865   77755444432    22222245666777777777653      23367888999999999


Q ss_pred             HHHHHhhccCCCCCcccccCCcceeeecCC------C-HHHHHHHHhcccEEEcCCC-------------cEEEccCChh
Q 012647          383 LFDSLSAKDKSGKDWSFILRQIGMFSFTGL------N-KAQSDNMTNKWHVYMTKDG-------------RISLAGLSLA  442 (459)
Q Consensus       383 l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l------~-~~~~~~ll~~~gI~v~~gg-------------Ris~~~~~~e  442 (459)
                      +.+.|+ +++    +++.++++++|+|+.+      + .+++++|++++||.+.||.             ||+++. +++
T Consensus       298 l~~~L~-~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~-~~~  371 (387)
T PRK07777        298 LAAGLA-EAG----FEVHDSAGTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCK-RDD  371 (387)
T ss_pred             HHHHHH-hCC----CCccCCCcceEEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecC-CHH
Confidence            999999 876    6788889999999653      2 4567888877899998861             999987 899


Q ss_pred             hHHHHHHHHHHHHh
Q 012647          443 KCEYLADAIIDSYH  456 (459)
Q Consensus       443 ~i~~~~~~l~~~~~  456 (459)
                      ++++++++|++++.
T Consensus       372 ~l~~~l~~l~~~~~  385 (387)
T PRK07777        372 TLDEAIRRLRALRG  385 (387)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988764

>PRK05839 hypothetical protein; Provisional

Probab=100.00  E-value=9.4e-46  Score=366.14  Aligned_cols=342  Identities=12%  Similarity=0.087  Sum_probs=264.4

Q ss_pred             chhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccC
Q 012647           71 LGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ  150 (459)
Q Consensus        71 ~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~  150 (459)
                      ....+.+++..+.++++|+.|.|    ..++ ++.+.+++.+....  ...|++..|.++||+++|+++...+|..++++
T Consensus        12 ~~~~~~~~~~~~~~~i~l~~~~p----~~~~-~~~~~~a~~~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~   84 (374)
T PRK05839         12 RELLKEITPNKEYKGLDLTIGEP----QFET-PKFIQDALKNNAHL--LNKYPKSAGEESLREAQRGFFKRRFKIELKEN   84 (374)
T ss_pred             HHHHHHhhhcCCCCeEEcCCCCC----CCCC-CHHHHHHHHHHhhc--cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcc
Confidence            34444444433458999999998    4443 68888888776532  47899999999999999999988888888899


Q ss_pred             ceEEeecccchhHHHHHHHHHHHh-CCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCC
Q 012647          151 RVATVQGLSGTGSLRLAAALIERY-FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (459)
Q Consensus       151 ~i~~~~t~ggt~a~~l~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~  229 (459)
                      +|++  |+|+++++.++..++ .+ .+||.|++++|+|..|...++..|++++++|+++++++.+|++..+  + +   +
T Consensus        85 ~I~i--t~G~~~al~~~~~~~-~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~--~-~---~  155 (374)
T PRK05839         85 ELIP--TFGTREVLFNFPQFV-LFDKQNPTIAYPNPFYQIYEGAAIASRAKVLLMPLTKENDFTPSLNEKE--L-Q---E  155 (374)
T ss_pred             eEEE--ecCcHHHHHHHHHHH-hcCCCCCEEEECCCCchhhHHHHHhcCCEEEEeecccccCCcCCcchhh--h-c---c
Confidence            9999  999999998873322 12 3789999999999999999999999999999965556777765432  2 2   5


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH-----hcCCeEEEEEcCCc
Q 012647          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-----TRGMELLVAQSYSK  304 (459)
Q Consensus       230 ~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~S~SK  304 (459)
                      +++++++|||||||.+++.+++++|+++|++||++||+||+|.++.+++   ...++....     ...+++++++||||
T Consensus       156 ~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~---~~~s~~~~~~~~~~~~~~~vi~~~SfSK  232 (374)
T PRK05839        156 VDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENT---PPPSLLEASILVGNESFKNVLVINSISK  232 (374)
T ss_pred             ccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCC---CCCCHhhhhcccCccccCcEEEEecccc
Confidence            6788889999999999999999999999999999999999999986532   122222211     13368999999999


Q ss_pred             CcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          305 NLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF  384 (459)
Q Consensus       305 ~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~  384 (459)
                      .|++||+|+||+++   +++..+++..    .......+.+.+.|.++...+.+.+       ++++.+++++++++.+.
T Consensus       233 ~~~~~GlRiG~ii~---~~~~~~~~~~----~~~~~~~~~~~~~q~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~  298 (374)
T PRK05839        233 RSSAPGLRSGFIAG---DASILKKYKA----YRTYLGCASPLPLQKAAAVAWLDDE-------HAEFFRNIYAKNLKLAR  298 (374)
T ss_pred             ccCCccceeEEEec---CHHHHHHHHH----HHhhcCCCCChHHHHHHHHHhccch-------HHHHHHHHHHHHHHHHH
Confidence            99999999999965   7775544433    3222233677788888877776543       35677888888888876


Q ss_pred             HHHhhccCCCCCcccccCCcceeeecCC--CHHHHHHHHhcccEEEcCC----------C--cEEEccCChhhHHHHHHH
Q 012647          385 DSLSAKDKSGKDWSFILRQIGMFSFTGL--NKAQSDNMTNKWHVYMTKD----------G--RISLAGLSLAKCEYLADA  450 (459)
Q Consensus       385 ~~L~~~~g~~~~~~~~~~~~g~f~~~~l--~~~~~~~ll~~~gI~v~~g----------g--Ris~~~~~~e~i~~~~~~  450 (459)
                      +.|.        +.  .|++|+|+|+++  +.++++++++++||.+.||          +  |||++. ++++++.++++
T Consensus       299 ~~l~--------~~--~p~gg~fi~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~-~~~~~~~~l~~  367 (374)
T PRK05839        299 EILG--------IT--IPPATFYVWLPVDNDEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVY-DTPKLEKALEI  367 (374)
T ss_pred             HhcC--------CC--CCCeeEEEEEeCCChHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecC-CHHHHHHHHHH
Confidence            6553        23  678999999987  3566778887789999986          2  999987 89999999999


Q ss_pred             HHHHHh
Q 012647          451 IIDSYH  456 (459)
Q Consensus       451 l~~~~~  456 (459)
                      |+++++
T Consensus       368 l~~~l~  373 (374)
T PRK05839        368 IKTYLE  373 (374)
T ss_pred             HHHHhh
Confidence            999875

>PRK08175 aminotransferase; Validated

Probab=100.00  E-value=2.5e-45  Score=366.13  Aligned_cols=343  Identities=13%  Similarity=0.139  Sum_probs=272.1

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccC-ceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~gg  160 (459)
                      ++++++|+.|.|    ..++ ++.+.+++.+.+.......|++..|.++||+++++++...+|..++++ +|++  |+|+
T Consensus        28 ~~~~i~l~~g~p----~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~--t~G~  100 (395)
T PRK08175         28 GEDIIDFSMGNP----DGPT-PPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIV--TIGS  100 (395)
T ss_pred             CCCeEEcCCCCC----CCCC-CHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE--ccCc
Confidence            468999999987    2332 566777776665444447899999999999999999987778888887 7999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      +++++++.  ...+.|||+|++++|+|+.+...++..|++++.+|++++.   .++++++++++...++++++++++|||
T Consensus       101 ~~~l~~~~--~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~---~~~~~l~~~l~~~~~~~~~v~i~~p~N  175 (395)
T PRK08175        101 KEGLAHLM--LATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGV---DFFNELERAIRESYPKPKMMILGFPSN  175 (395)
T ss_pred             HHHHHHHH--HHhCCCCCEEEEcCCCCcchHHHHHHcCCeEEEEecccCC---CcHHHHHHHHhhccCCceEEEEeCCCC
Confidence            99999873  4447799999999999999999999999999999985332   347888888875434678888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      |||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+....+++++++||||.||+||+|+||+++  
T Consensus       176 PtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~--  251 (395)
T PRK08175        176 PTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGW--KAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVG--  251 (395)
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCC--CCcchhcCCCcccCEEEEeeccccccCcchhheeeeC--
Confidence            999999999999999999999999999999999887532  1122222211235688999999999999999999865  


Q ss_pred             CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012647          321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  400 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  400 (459)
                       ++++++.+.+    .......+++...|.++..+|.+.      .++++++++.|+++++++.+.|+ ++|    +.+.
T Consensus       252 -~~~l~~~~~~----~~~~~~~~~~~~~q~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~L~-~~~----~~~~  315 (395)
T PRK08175        252 -NPELVSALAR----IKSYHDYGTFTPLQVAAIAALEGD------QQCVRDIAEQYKRRRDVLVKGLH-EAG----WMVE  315 (395)
T ss_pred             -CHHHHHHHHH----HHhhcccCCCcHHHHHHHHHHhCc------HHHHHHHHHHHHHHHHHHHHHHH-HcC----Cccc
Confidence             8885554443    332223356666788887777653      34578889999999999999999 876    5777


Q ss_pred             cCCcceeeecCCC--------HHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHHHhh
Q 012647          401 LRQIGMFSFTGLN--------KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       401 ~~~~g~f~~~~l~--------~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                      .+++|+|+|+.+.        .++++++++++||.+.||.          ||+++. +++.+++++++|.+++++
T Consensus       316 ~p~~g~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~~-~~~~~~~al~~l~~~l~~  389 (395)
T PRK08175        316 MPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIE-NRDRIRQAIRGIKAMFRA  389 (395)
T ss_pred             CCCEEEEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeCC-CHHHHHHHHHHHHHHHHh
Confidence            8889999998653        3556778877899999971          999985 889999999999998875

>PRK08363 alanine aminotransferase; Validated

Probab=100.00  E-value=2.8e-45  Score=366.32  Aligned_cols=349  Identities=17%  Similarity=0.170  Sum_probs=280.1

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +.++|+|+.|.|-. ...++ ++.+.+++.+.+... ...|++..|.++||+++++++...+|..+++++|++  |+|++
T Consensus        29 ~~~~i~l~~g~p~~-~~~~p-~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~i--t~G~~  103 (398)
T PRK08363         29 GIKVIRLNIGDPVK-FDFQP-PEHMKEAYCRAIKEG-HNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRV--TAAVT  103 (398)
T ss_pred             CCCeEEEeCCCCCc-CCCCC-CHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEE--eCCHH
Confidence            46899999999832 12232 788899998877544 267988999999999999999888888889999999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      +++.++  +...+.+||+|++++|+|..|...++.+|++++.++..+++++.+|++.+++.+++   +++++++++||||
T Consensus       104 ~al~~~--~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~---~~~~v~l~~p~NP  178 (398)
T PRK08363        104 EALQLI--FGALLDPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITE---KTKAIAVINPNNP  178 (398)
T ss_pred             HHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHHHhhCCc---ceEEEEEECCCCC
Confidence            999998  34447899999999999999999999999998888432345678999999998865   6778888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+++.+++++|+++|+++|+++|+||+|.++.+++   ...++..+ ....++++++||||.|+++|+|+||+++ .+
T Consensus       179 tG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~---~~~~~~~~-~~~~~vi~~~SfSK~~~~~GlRiG~~~~-~~  253 (398)
T PRK08363        179 TGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEG---KHVSPGSL-TKDVPVIVMNGLSKVYFATGWRLGYIYF-VD  253 (398)
T ss_pred             CCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCC---cccCHHHc-CcCCcEEEEecchhccCCccceEEEEEE-eC
Confidence            9999999999999999999999999999999987653   22233332 2345799999999999999999999843 24


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  401 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  401 (459)
                      +++.++.+.+.+.......+ +++.++|.++..+|.+.      .+++++.+++++++++.+.+.|+ +++   ++.+..
T Consensus       254 ~~~~~~~l~~~~~~~~~~~~-~~s~~~q~~~~~~l~~~------~~~l~~~~~~~~~~~~~l~~~L~-~~~---~~~~~~  322 (398)
T PRK08363        254 PEGKLAEVREAIDKLARIRL-CPNTPAQFAAIAGLTGP------MDYLEEYMKKLKERRDYIYKRLN-EIP---GISTTK  322 (398)
T ss_pred             cHHHHHHHHHHHHHHhcccc-cCChHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHHHHHHh-cCC---CCEecC
Confidence            66666666666544322222 67888899888888653      24467888999999999999998 762   267778


Q ss_pred             CCcceeeecCC-------CHHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHHHhh
Q 012647          402 RQIGMFSFTGL-------NKAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       402 ~~~g~f~~~~l-------~~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                      |+||||+|+.+       +.+++.++++++||.+.||.          |||++. +++++++++++|++++++
T Consensus       323 p~g~~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~~~~  394 (398)
T PRK08363        323 PQGAFYIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLP-PVEILEEAMDRFEEFMRE  394 (398)
T ss_pred             CCeEEEEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHH
Confidence            99999999633       24566777777899999872          999976 889999999999998875

>PRK09265 aminotransferase AlaT; Validated

Probab=100.00  E-value=5.4e-45  Score=364.77  Aligned_cols=352  Identities=16%  Similarity=0.131  Sum_probs=273.3

Q ss_pred             CCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        81 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      .++++++|+.|.| +..+.++ ++.+.+++.+.+..  ...|++..|.++||+++|+++.......+++++|++  |+|+
T Consensus        31 ~~~~~i~l~~g~p-~~~~~~~-~~~i~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~--t~G~  104 (404)
T PRK09265         31 EGHKILKLNIGNP-APFGFEA-PDEILRDVIRNLPT--AQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYI--GNGV  104 (404)
T ss_pred             cCCCeEEecCCCC-CcCCCCC-CHHHHHHHHHHhhc--CCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEE--eCCh
Confidence            3568999999987 3223333 67788887776543  368999999999999999998765544678999999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      ++++.++.  ...+.+||+|++++|+|..|...++..|++++.++++.++++.+|++.+++.+++   +++++++++|||
T Consensus       105 ~~~l~~~~--~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~---~~~~v~l~~P~N  179 (404)
T PRK09265        105 SELIVMAM--QALLNNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITP---RTKAIVIINPNN  179 (404)
T ss_pred             HHHHHHHH--HHhCCCCCEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhccc---cceEEEEECCCC
Confidence            99999883  3346799999999999999999999999999999875445678999999998865   678888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      |||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+ ....++++++||||.||+||+|+||+++ .
T Consensus       180 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~~~~~vi~~~S~SK~~~~pGlRiG~~v~-~  255 (404)
T PRK09265        180 PTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGA--VHISIASL-APDLLCVTFNGLSKAYRVAGFRVGWMVL-S  255 (404)
T ss_pred             CCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCC--CcCCHHHc-CCCceEEEEecchhhccCcccceEEEEE-e
Confidence            999999999999999999999999999999999987531  22233332 2234789999999999999999999953 2


Q ss_pred             CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012647          321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  400 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  400 (459)
                      ++++..+.+.+.+.... ....+++.++|.++..+|.+.+..   .+.+ +..+++.++++.+.+.|+ +++   ++++.
T Consensus       256 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~---~~~~-~~~~~~~~~r~~~~~~L~-~~~---~~~~~  326 (404)
T PRK09265        256 GPKKHAKGYIEGLDMLA-SMRLCANVPAQHAIQTALGGYQSI---NELI-LPGGRLYEQRDRAWELLN-AIP---GVSCV  326 (404)
T ss_pred             CchHHHHHHHHHHHHHh-ccccCCCcHHHHHHHHHhcCchhH---HHHH-HHHHHHHHHHHHHHHHHh-cCC---CCccc
Confidence            45554444555443322 223467888999998888754322   1222 223567778999999998 762   26788


Q ss_pred             cCCcceeeecCCC---------HHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHHHhh
Q 012647          401 LRQIGMFSFTGLN---------KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       401 ~~~~g~f~~~~l~---------~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                      .|++|+|+|+.++         .+++.++++++||.+.||.          ||+++. ++|+++.++++|+++++.
T Consensus       327 ~p~~g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~~-~~e~l~~~l~rl~~~l~~  401 (404)
T PRK09265        327 KPKGALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTLP-RVDDLEEAIGRIGRFLSG  401 (404)
T ss_pred             CCCcceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeCC-CHHHHHHHHHHHHHHHHH
Confidence            8999999997542         3456677777899999872          999975 899999999999998875

>PRK07550 hypothetical protein; Provisional

Probab=100.00  E-value=4.4e-45  Score=363.52  Aligned_cols=356  Identities=17%  Similarity=0.154  Sum_probs=278.5

Q ss_pred             CCccchhHHHhhh--CCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCC
Q 012647           67 PDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADN  144 (459)
Q Consensus        67 ~~~i~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~  144 (459)
                      +..+.++.+.+..  ..+.+.|+|+.|.|    ..++ ++.+.+++.+.+.......|.+..|.++||+++++++...+|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~i~l~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g   85 (386)
T PRK07550         11 PPPIPEVRAWLAGYDGADGPLIDLSQAVP----GYPP-PPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYG   85 (386)
T ss_pred             ChHHHHHHHHHHHHhhcCCCeEEeCCCCC----CCCC-CHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            3344454443321  23457899999998    3333 788888888876544446798999999999999999988888


Q ss_pred             CccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHH
Q 012647          145 SVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIK  224 (459)
Q Consensus       145 ~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~  224 (459)
                      ..+++++|++  |+|+++++.++...  .+.+||+|++++|+|..+...++..|++++.+++++++++.+|++.+++.++
T Consensus        86 ~~~~~~~i~~--t~G~~~al~~~~~~--l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~  161 (386)
T PRK07550         86 AAISPEQVHI--TSGCNQAFWAAMVT--LAGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALIT  161 (386)
T ss_pred             CCCCcceEEE--ecCcHHHHHHHHHH--hcCCCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhc
Confidence            8888999999  99999999998433  3679999999999999999999999999999999644567789999999987


Q ss_pred             cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCc
Q 012647          225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK  304 (459)
Q Consensus       225 ~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  304 (459)
                      +   +++++++++||||||.+++.+++++|+++|++||++||+||+|.++.++..  ...++....+..+++++++||||
T Consensus       162 ~---~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK  236 (386)
T PRK07550        162 P---RTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGG--APHDLFADPDWDDTLVHLYSFSK  236 (386)
T ss_pred             c---cCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCC--CCcchhhCCCccccEEEEecchh
Confidence            6   566777789999999999999999999999999999999999999875421  11111111122457999999999


Q ss_pred             CcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          305 NLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF  384 (459)
Q Consensus       305 ~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~  384 (459)
                      .||++|+|+||+++   +++.++.+..    .......+++.++|.++..+|.+.      .+++++.++.++++++.+.
T Consensus       237 ~~g~~G~RiG~i~~---~~~~~~~~~~----~~~~~~~~~s~~~q~~~~~~l~~~------~~~~~~~~~~~~~~~~~l~  303 (386)
T PRK07550        237 SYALTGHRVGAVVA---SPARIAEIEK----FMDTVAICAPRIGQIAVAWGLPNL------ADWRAGNRAEIARRRDAFR  303 (386)
T ss_pred             hccCcccceEeeec---CHHHHHHHHH----HHhhcccCCCcHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHH
Confidence            99999999999965   7775544443    333334567888999998888752      3446778889999999999


Q ss_pred             HHHhhccCCCCCcccccCCcceeeecCC-----C-HHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHH
Q 012647          385 DSLSAKDKSGKDWSFILRQIGMFSFTGL-----N-KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLA  448 (459)
Q Consensus       385 ~~L~~~~g~~~~~~~~~~~~g~f~~~~l-----~-~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~  448 (459)
                      +.|. +++   ++.+ .+.+|+|+|+.+     + .+++++|++++||.+.||.          ||+++..+++++++++
T Consensus       304 ~~L~-~~~---~~~~-~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~~~  378 (386)
T PRK07550        304 AVFA-RLP---GWEL-LASGAYFAYVRHPFPDRPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELV  378 (386)
T ss_pred             HHHH-hCC---Ccee-CCCceEEEEecCCCCCCCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCCHHHHHHHH
Confidence            9998 752   1443 467899999743     3 4557778887899999962          9999977889999999


Q ss_pred             HHHHHH
Q 012647          449 DAIIDS  454 (459)
Q Consensus       449 ~~l~~~  454 (459)
                      ++|.++
T Consensus       379 ~~l~~~  384 (386)
T PRK07550        379 ERLRAF  384 (386)
T ss_pred             HHHHhh
Confidence            999764

>PLN02368 alanine transaminase

Probab=100.00  E-value=3e-45  Score=363.18  Aligned_cols=323  Identities=16%  Similarity=0.153  Sum_probs=249.7

Q ss_pred             CCCceeecccccCCCC-----CC----------------c-----cCcHHHHHHHHHHhh-cCCCCCCCCCcccHHHHHH
Q 012647           82 DEKKLNLGVGAYRTEE-----LQ----------------P-----YVLDVVKKAENLMLE-RGENKEYLPIEGLAAFNKV  134 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~-----~~----------------~-----~~~~~v~~a~~~~~~-~~~~~~Y~~~~g~~~lr~a  134 (459)
                      +.++|+|++|+| |..     ++                |     ..++.+.+++..... ......|++..|.++||++
T Consensus        37 g~~vi~l~iG~P-d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~i~~a~~~l~~~~~~~~~Y~~~~G~~~LR~a  115 (407)
T PLN02368         37 GKKIIFTNVGNP-HALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIARAKHYLSLTSGGLGAYSDSRGLPGVRKE  115 (407)
T ss_pred             hhhhhcccCCCh-hHcCCCCchHHHHHHHHhcCchhcCCccccccCCHHHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHH
Confidence            468999999998 210     01                1     125566666554322 2234789999999999999


Q ss_pred             HHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHh-CCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCC
Q 012647          135 TAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY-FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVG  213 (459)
Q Consensus       135 ia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~  213 (459)
                      ||+++.+.+|..+++++|++  |+|+++++.++  +...+ .+||+|++++|+|+.|...++.+|++++.+|++++++|+
T Consensus       116 ia~~~~~~~g~~~~~~~I~i--t~Ga~~al~~~--~~~l~~~pGd~Vli~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~~  191 (407)
T PLN02368        116 VAEFIERRDGYPSDPELIFL--TDGASKGVMQI--LNAVIRGEKDGVLVPVPQYPLYSATISLLGGTLVPYYLEESENWG  191 (407)
T ss_pred             HHHHHHHhcCCCCChhhEEE--cccHHHHHHHH--HHHHcCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecccccCCC
Confidence            99999888788889999999  99999999988  33345 599999999999999999999999999999997666799


Q ss_pred             CCHHHHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH
Q 012647          214 LDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA  290 (459)
Q Consensus       214 ~d~e~l~~~i~~~---~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~  290 (459)
                      +|++.+++++++.   ..++++++++|||||||.+++.+++++|+++|++||++||+||+|.++.|++.. ...++..+.
T Consensus       192 ~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~-~~~s~~~~~  270 (407)
T PLN02368        192 LDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDER-PFISAKKVL  270 (407)
T ss_pred             CCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC-CcccHHHHH
Confidence            9999999998741   125788889999999999999999999999999999999999999999986421 222333322


Q ss_pred             h-------cCCeEEEEEcCCcCc-ccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChh--
Q 012647          291 T-------RGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPA--  360 (459)
Q Consensus       291 ~-------~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~--  360 (459)
                      .       ..+++++++||||.| |++|||+||+++...+++.++.+..    .... ..+++.++|.++..+|++++  
T Consensus       271 ~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~----~~~~-~~~~~~~~Q~aa~~~l~~~~~~  345 (407)
T PLN02368        271 MDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYK----VASI-ALSPNVSGQIFMGLMVNPPKPG  345 (407)
T ss_pred             hhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHH----Hhcc-cCCCCcHHHHHHHHHhCCCCCC
Confidence            1       234899999999998 8999999999521147774444433    3222 33688899999999997642  


Q ss_pred             --hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC--CHHHHHH
Q 012647          361 --LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--NKAQSDN  419 (459)
Q Consensus       361 --~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l--~~~~~~~  419 (459)
                        ....|.++++++++.|+++++.+.+.|+ +++   ++.+..|+|+||+|+++  ..+.+++
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~-~~~---g~~~~~P~Gafy~~~~i~lp~~~~~~  404 (407)
T PLN02368        346 DISYDQFVRESKGILESLRRRARMMTDGFN-SCK---NVVCNFTEGAMYSFPQIKLPPKAIEA  404 (407)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC---CeEeCCCCeeeEeccCCCCCHHHHHH
Confidence              1123456667789999999999999999 872   16888999999999754  5555543

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=100.00  E-value=2.1e-45  Score=370.72  Aligned_cols=330  Identities=16%  Similarity=0.141  Sum_probs=264.5

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      ..+++|+.|.|    ..++ +|.+.+++.+....  ...|++..|.++||+++++++....+   .+++|++  |+|+++
T Consensus        85 ~~~i~L~~g~p----~~~~-~p~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~~~~~~~---~~~~Iii--t~G~~~  152 (431)
T PRK15481         85 TPLHDLAGGNP----DPQR-LPDLSRYFARLSRT--PRLYGDAPVSPELHAWAARWLRDDCP---VAFEIDL--TSGAID  152 (431)
T ss_pred             chhhhhhcCCC----ChhH-hHHHHHHHHHhhhh--hhhcCCcCCCHHHHHHHHHHHhhccC---CcCeEEE--ecCcHH
Confidence            46789999987    3332 45677777765532  35799999999999999999764322   2468999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEe-CCCCCC
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH-GCAHNP  241 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~-~~p~NP  241 (459)
                      ++.++  +...+.|||.|++++|+|..|...++..|++++.+|++ +  .++|++.++++++.   +++++++ +|||||
T Consensus       153 al~~~--~~~l~~pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~-~--~g~~~~~l~~~~~~---~~k~i~~~p~p~NP  224 (431)
T PRK15481        153 AIERL--LCAHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVD-A--EGMQPEKLERALAQ---GARAVILTPRAHNP  224 (431)
T ss_pred             HHHHH--HHHhCCCCCEEEEeCCCcHHHHHHHHHcCCeEEeeccC-C--CCCCHHHHHHHHhc---CCCEEEECCCCCCC
Confidence            99998  44447799999999999999999999999999999984 2  25899999999875   4545444 599999


Q ss_pred             CCCCCCHHHHHHHHHHHHhc-CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          242 TGIDPTPEQWEKIADVIQEK-NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~-~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      ||.+++.+++++|+++|++| +++||+||+|.++.+++.   ...+   ....+++++++||||.|+ ||+|+||+++  
T Consensus       225 TG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~---~~~~---~~~~~~vi~~~SfSK~~~-~GlRiG~~i~--  295 (431)
T PRK15481        225 TGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPY---HSVI---PQTTQRWALIRSVSKALG-PDLRLAFVAS--  295 (431)
T ss_pred             CCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCC---CCCC---cCCCCCEEEEeeeccccC-CCceeEEEeC--
Confidence            99999999999999999999 999999999999975421   1111   113468999999999999 9999999866  


Q ss_pred             CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012647          321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  400 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  400 (459)
                       +++..+.+....    .....+++.++|.++..+|+++++    .+++++.++.++++++.+.+.|+ +.|    +.+.
T Consensus       296 -~~~~~~~~~~~~----~~~~~~~s~~~q~a~~~~l~~~~~----~~~l~~~~~~~~~~r~~~~~~L~-~~~----~~~~  361 (431)
T PRK15481        296 -DSATSARLRLRL----NSGTQWVSHLLQDLVYACLTDPEY----QARLAQARLFYAQRRQKLARALQ-QYG----IAIP  361 (431)
T ss_pred             -CHHHHHHHHHHH----hccccCCCHHHHHHHHHHHhCccH----HHHHHHHHHHHHHHHHHHHHHHH-HcC----Cccc
Confidence             777555553322    222336788999999999988755    45688999999999999999999 876    5676


Q ss_pred             cCCcceeeecCCC---HHHHHHHHhcccEEEcCCC-----------cEEEccCChhhHHHHHHHHHHHHh
Q 012647          401 LRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKDG-----------RISLAGLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       401 ~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~gg-----------Ris~~~~~~e~i~~~~~~l~~~~~  456 (459)
                      .|++|+|+|+.+.   .++++.|.+ +||.+.||.           ||||+..+++++++++++|++++.
T Consensus       362 ~p~gg~f~~~~l~~~~~~~~~~l~~-~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~~~  430 (431)
T PRK15481        362 SPGDGLNLWLPLDTDSQATALTLAK-SGWLVREGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQALN  430 (431)
T ss_pred             cCCCeEEEEEECCCCHHHHHHHHHH-CCcEEecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHHhc
Confidence            8999999999873   355666654 699999861           999998889999999999999875

>PRK09275 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.6e-45  Score=370.53  Aligned_cols=339  Identities=14%  Similarity=0.104  Sum_probs=257.6

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcC-CCCcc-c--cCceEEeeccc
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGA-DNSVL-K--EQRVATVQGLS  159 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~-~~~~~-~--~~~i~~~~t~g  159 (459)
                      ++|+|+.|+|    ++++ ++.+.++...+ . +  ..|++..|.+++|++|++++..+ .+... .  +++|++  |.|
T Consensus       101 ~~i~l~~g~p----~~~~-~~~v~e~~~~~-~-~--~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~v--T~G  169 (527)
T PRK09275        101 DAVSYVRDQL----GFDA-DEFVYELVDGI-I-G--DNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFA--VEG  169 (527)
T ss_pred             HHHhhcCCCC----CCCC-CHHHHHHHHHH-h-c--CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEE--eCC
Confidence            4799999999    6765 77788855444 3 2  35999999999999999855443 22221 2  348999  999


Q ss_pred             chhHHHHHHHHH---HHhCCCCEEEEcCCCCcchHHHhhhCCCC--eeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEE
Q 012647          160 GTGSLRLAAALI---ERYFPGAKVLISSPTWGNHKNIFNDARVP--WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILL  234 (459)
Q Consensus       160 gt~a~~l~~~~~---~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~--v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii  234 (459)
                      +++++..+...+   ..+.|||+|++++|+|+.|...++..|+.  ++.++.+++++|.+|++.+++++++   ++++++
T Consensus       170 a~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~---~tkai~  246 (527)
T PRK09275        170 GTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDP---SIKALF  246 (527)
T ss_pred             HHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCC---CCCEEE
Confidence            999999884432   14679999999999999999998877654  4555554456799999999998765   788888


Q ss_pred             eCCCCCCCCCCCCHHHHHHHHHHHHh--cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCC
Q 012647          235 HGCAHNPTGIDPTPEQWEKIADVIQE--KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAER  312 (459)
Q Consensus       235 ~~~p~NPTG~~~s~~~l~~i~~l~~~--~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R  312 (459)
                      ++|||||||.+++.+++++|+++|++  +|++||+||+|.++.+.     ..++...  ..+++++++||||.||++|||
T Consensus       247 l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~-----~~s~~~~--~~~~~I~v~SfSK~f~mtG~R  319 (527)
T PRK09275        247 LVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDD-----FRSLFAV--LPYNTILVYSFSKYFGATGWR  319 (527)
T ss_pred             EeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhccc-----ccCHHHh--CCCCEEEEeehhhhccCcHhH
Confidence            89999999999999999999999964  59999999999998742     1222221  235899999999999999999


Q ss_pred             cceEEEEeCChhHHHHHHH--------------------------------HHHhhccccccCCchHHHHHH-----HHH
Q 012647          313 IGAMNVVCSSSDLAARVKS--------------------------------QLKRLARPMYSNPPVHGARIV-----ANV  355 (459)
Q Consensus       313 iG~~~~v~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~-----~~~  355 (459)
                      +||+++  +++...+++++                                ....++...+.+++.+.|.++     ..+
T Consensus       320 lG~i~~--~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~al  397 (527)
T PRK09275        320 LGVIAL--HEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFAL  397 (527)
T ss_pred             Hhhhhc--CchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Confidence            999954  33333333322                                224455555667787777762     233


Q ss_pred             hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCC---------------------H
Q 012647          356 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN---------------------K  414 (459)
Q Consensus       356 L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~---------------------~  414 (459)
                      |.+.      .++++++++.++++++.+.+.|. . +    +...+|+|+||+|+++.                     .
T Consensus       398 l~~~------~~~~~~~~~~~~~Rr~~l~~~Lg-~-~----~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~  465 (527)
T PRK09275        398 LDEE------DAYKKAMKDIIRRRYKALYEGLG-L-P----EPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPV  465 (527)
T ss_pred             HhCc------hHHHHHHHHHHHHHHHHHHHHcC-C-C----CcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHH
Confidence            5443      23467889999999999988875 2 2    34457899999998652                     2


Q ss_pred             HHHHHHHhcccEEEcCCC---------cEEEccCChhhHHHHHHHHHHHHhh
Q 012647          415 AQSDNMTNKWHVYMTKDG---------RISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       415 ~~~~~ll~~~gI~v~~gg---------Ris~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                      +++.+|++++||.+.||.         |||++.++++++.++.++|++++++
T Consensus       466 ~f~~~Ll~e~gV~v~PG~~Fg~~~~~vRis~a~~~~~~~~~~~~rl~~~l~~  517 (527)
T PRK09275        466 DLLFRLAEETGVVLLPGGGFGGPEWSVRVSLANLNEEDYAKIGKAIRKLLDE  517 (527)
T ss_pred             HHHHHHHhcCCEEEeCchhhCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            457799999999999983         9999987899999999999998875

>PRK07568 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.7e-44  Score=360.96  Aligned_cols=341  Identities=16%  Similarity=0.171  Sum_probs=272.2

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      .++++|+.|.|    ..++ ++.+.+++.+....  ...|++..|.+++|+++++++. .++..+++++|++  |+|+++
T Consensus        30 ~~~i~l~~~~~----~~~~-~~~~~~a~~~~~~~--~~~Y~~~~g~~~lr~~ia~~~~-~~~~~~~~~~i~~--t~G~~~   99 (397)
T PRK07568         30 IKVYHLNIGQP----DIKT-PEVFFEAIKNYDEE--VLAYSHSQGIPELREAFAKYYK-KWGIDVEPDEILI--TNGGSE   99 (397)
T ss_pred             CCEEEecCCCC----CCCC-CHHHHHHHHHHhcC--CcCcCCCCCCHHHHHHHHHHHH-HhCCCCCcceEEE--cCChHH
Confidence            56899999997    4333 78888888776532  4679999999999999999987 5677788999999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCC-CCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVG-LDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~-~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      ++.++.  ...+.+||+|++++|+|..|...++..|++++.+++++++++. .|++.+++++++   +++++++++||||
T Consensus       100 al~~~~--~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~---~~~~v~i~~p~NP  174 (397)
T PRK07568        100 AILFAM--MAICDPGDEILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITP---KTKAILISNPGNP  174 (397)
T ss_pred             HHHHHH--HHhcCCCCEEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCc---cceEEEEECCCCC
Confidence            999984  3346799999999999999999999999999999985334444 367999888865   6778888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+++.+++++|+++|+++|+++|+||+|.++.+++.  ...++..+....+++++++||||.||++|+|+||+  +++
T Consensus       175 tG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~--~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~--~~~  250 (397)
T PRK07568        175 TGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGL--KYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCL--ISK  250 (397)
T ss_pred             CCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCC--CccChhhcCCCcCCEEEEecchhhccCCCcceEEE--ecC
Confidence            99999999999999999999999999999999987531  22233333223568999999999999999999998  445


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  401 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  401 (459)
                      +++.++.+.+.    ... ..+++.+.|.++..+|++.      .+++++.++.++++++.+.+.|+ +++   ++.+..
T Consensus       251 ~~~~~~~~~~~----~~~-~~~~s~~~q~~~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~~---~~~~~~  315 (397)
T PRK07568        251 NKELIAAAMKL----CQA-RLSPPTLEQIGAAALLDTP------ESYFDEVREEYKKRRDILYEELN-KIP---GVVCEK  315 (397)
T ss_pred             CHHHHHHHHHH----hhc-cCCCCcHHHHHHHHHhhCC------HHHHHHHHHHHHHHHHHHHHHHh-cCC---CceecC
Confidence            56654444332    212 2367788999998888754      23467889999999999999998 763   156778


Q ss_pred             CCcceeeecCCC----HHHHHHHHhc-----ccEEEcCC-----------C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          402 RQIGMFSFTGLN----KAQSDNMTNK-----WHVYMTKD-----------G--RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       402 ~~~g~f~~~~l~----~~~~~~ll~~-----~gI~v~~g-----------g--Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      |+||+|+|+.+.    .++.+.++++     +||.+.||           +  ||||+. +++++++++++|.+++++.
T Consensus       316 p~g~~~~~~~l~~~~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~-~~~~~~~~~~~l~~~l~~~  393 (397)
T PRK07568        316 PKGAFYIIAKLPVDDAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVL-NEEDLKRAMEILKEALEKY  393 (397)
T ss_pred             CCcceEEEEecCCCCHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeC-CHHHHHHHHHHHHHHHHHh
Confidence            899999998762    3556777664     69999885           1  999986 7899999999999988764

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=100.00  E-value=1.7e-44  Score=354.53  Aligned_cols=329  Identities=14%  Similarity=0.117  Sum_probs=265.4

Q ss_pred             ceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccC-ceEEeecccchhH
Q 012647           85 KLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGTGS  163 (459)
Q Consensus        85 ~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt~a  163 (459)
                      +++|+.|.|    ..++ ++.+.+++.+....  ...|++..|.++||+++++++...+|+.++++ +|++  |+|++++
T Consensus         2 ~~~~~~g~p----~~~~-~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iii--t~Gs~~a   72 (350)
T TIGR03537         2 LFDFGTGDP----KEPT-PPFIRKALIDAVPE--VSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLP--SAGSKEA   72 (350)
T ss_pred             eEeccCCCC----CCCC-CHHHHHHHHHHHhc--cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE--cCChHHH
Confidence            579999988    4443 78899998887643  47798889999999999999988888888887 8999  9999999


Q ss_pred             HHHHHHHHHHhCCC---CEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          164 LRLAAALIERYFPG---AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       164 ~~l~~~~~~~~~~g---d~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      +.++.  ...+.+|   |+|++++|+|..|...++..|++++.+|+++++++.+|++++++++++   +++++++++|||
T Consensus        73 i~~~~--~~~~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~---~~~~i~i~~p~N  147 (350)
T TIGR03537        73 IFHFP--LVFIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILE---ETKIVWINYPHN  147 (350)
T ss_pred             HHHHH--HHHcCCCCCCceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhh---ccEEEEEeCCCC
Confidence            99983  3346676   699999999999999999999999999996455678999999999876   678888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      |||.+++.+++++|+++|++||++||+||+|.++.+++.   ..++..+  ..+++++++||||.+|++|+|+||+++  
T Consensus       148 PtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~---~~~~~~~--~~~~~i~~~s~SK~~g~~GlRiG~~~~--  220 (350)
T TIGR03537       148 PTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEP---PHSALEV--GIENVLAFHSLSKRSGMTGYRSGFVAG--  220 (350)
T ss_pred             CcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCC---CCchhhc--CcCCEEEEeecccccCCccccceeeec--
Confidence            999999999999999999999999999999998876431   1122221  346899999999999999999999865  


Q ss_pred             CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012647          321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  400 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  400 (459)
                       +++..+.+...    ......+++.++|.++...+.+..       ++++.+++++++++.+.+.|+ +.|    +++.
T Consensus       221 -~~~~~~~~~~~----~~~~~~~~~~~~q~~~~~~l~~~~-------~~~~~r~~l~~~~~~~~~~l~-~~g----~~~~  283 (350)
T TIGR03537       221 -DEKLISFLRKL----RANFGVASPDFVQAAAKAAWSDDN-------HVLERRKIFKRKRDLFIEFFN-KVG----LEYL  283 (350)
T ss_pred             -CHHHHHHHHHH----HHhhccCCCHHHHHHHHHHhCCcH-------HHHHHHHHHHHHHHHHHHHHH-HCC----Cccc
Confidence             77755554433    222333566667777766666532       356778899999999999999 876    5778


Q ss_pred             cCCcceeeecCC----C-HHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHH
Q 012647          401 LRQIGMFSFTGL----N-KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIID  453 (459)
Q Consensus       401 ~~~~g~f~~~~l----~-~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~  453 (459)
                      .+++|+|+|+.+    + .++++.|++ +||.+.||.          ||+++. +++++++++++|++
T Consensus       284 ~~~g~~~~~~~~~~~~~~~~l~~~L~~-~gv~v~~g~~f~~~~~~~~Ri~~~~-~~~~~~~~l~~~~~  349 (350)
T TIGR03537       284 YPDATFYLWVKVPSGIDAKDYALRLLE-NGIVVAPGENFGSGEEGYVRVALVP-TLEECEEALRLWER  349 (350)
T ss_pred             CCCeEEEEEEECCCCCCHHHHHHHHHH-CCEEEcCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHhc
Confidence            889999999855    2 345667766 699999862          999975 88999999998865

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=100.00  E-value=3.3e-44  Score=358.69  Aligned_cols=337  Identities=16%  Similarity=0.139  Sum_probs=259.1

Q ss_pred             CCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC----CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEee
Q 012647           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG----ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (459)
Q Consensus        81 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~----~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (459)
                      +++++++|+.|+|    ..++ ++.+.+++.+.+.+.    ....|.|..|.++||+++|+++...   .+++++|++  
T Consensus        31 ~~~~~i~l~~~~~----~~~~-~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~---~~~~d~I~i--  100 (402)
T TIGR03542        31 PSADIIRLGIGDT----TQPL-PASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRG---RIDPEEIFI--  100 (402)
T ss_pred             CCCCeEEcCCCCC----CCCC-CHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhc---CCCHHHEEE--
Confidence            3568999999987    4443 788888888877542    2256989999999999999986432   266899999  


Q ss_pred             cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCC-----------CeeeeeeecCCCCCCCHHHHHHHHHc
Q 012647          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARV-----------PWSEYRYYDPKTVGLDFEGMIADIKA  225 (459)
Q Consensus       157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~-----------~v~~v~~~~~~~~~~d~e~l~~~i~~  225 (459)
                      |+|+++++.++   ...+.+||+|++++|+|..|...++.+|+           +++++|.++++++.+|++.      .
T Consensus       101 t~Ga~~al~~l---~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------~  171 (402)
T TIGR03542       101 SDGAKCDVFRL---QSLFGSDNTVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPE------E  171 (402)
T ss_pred             CCCcHHHHHHH---HHhcCCCCEEEEeCCCCcchHHHHHHcCCccccccccccceEEEeecchhhCCCCCccc------c
Confidence            99999999985   34467999999999999999999999999           9999998544445555421      1


Q ss_pred             CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC
Q 012647          226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (459)
Q Consensus       226 ~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (459)
                        +++++++++|||||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+....+++++++||||.
T Consensus       172 --~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~--~~~~~~~~~~~~~~vi~~~SfSK~  247 (402)
T TIGR03542       172 --PKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPS--LPHSIFEIPGAKECAIEFRSFSKT  247 (402)
T ss_pred             --CCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCC--CCcchhhCCCCcccEEEEecCccc
Confidence              2567888899999999999999999999999999999999999999986531  112222221123578999999999


Q ss_pred             cccCCCCcceEEEEeCChhHH----HHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 012647          306 LGLYAERIGAMNVVCSSSDLA----ARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQ  381 (459)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~  381 (459)
                      ||+||+|+||+++   +++++    +.+...........+.+++.++|.++..++.+..+     +.+.+.++.++++++
T Consensus       248 ~g~pGlRiG~~i~---~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~-----~~~~~~~~~~~~~~~  319 (402)
T TIGR03542       248 AGFTGVRLGWTVV---PKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGL-----QPILEAISYYMENAR  319 (402)
T ss_pred             cCCCCcceEEEEe---cHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcch-----hHHHHHHHHHHHHHH
Confidence            9999999999966   66644    11222222212223335778899988888876543     224567788999999


Q ss_pred             HHHHHHhhccCCCCCcccccCCcceeeecCC----C-HHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHH
Q 012647          382 KLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----N-KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEY  446 (459)
Q Consensus       382 ~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l----~-~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~  446 (459)
                      .+.+.|+ +.|    +++..+.+|+|+|+.+    + .++++.+++++||.+.||.          ||+++. ++++++.
T Consensus       320 ~~~~~L~-~~~----~~~~~~~~~~f~~v~l~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~l~~  393 (402)
T TIGR03542       320 ILRKALE-AAG----FKVYGGEHAPYLWVKTPEGISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFG-KRENIVE  393 (402)
T ss_pred             HHHHHHH-hcC----ceecCCCceeEEEEECCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHH
Confidence            9999999 776    5677778899999865    2 3567888877899999972          999877 8899999


Q ss_pred             HHHHHHHH
Q 012647          447 LADAIIDS  454 (459)
Q Consensus       447 ~~~~l~~~  454 (459)
                      ++++|+++
T Consensus       394 ~l~~l~~~  401 (402)
T TIGR03542       394 ACERIKEA  401 (402)
T ss_pred             HHHHHHhh
Confidence            99999875

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=100.00  E-value=9e-44  Score=351.32  Aligned_cols=346  Identities=14%  Similarity=0.124  Sum_probs=262.6

Q ss_pred             ccCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHH
Q 012647           58 RFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE  137 (459)
Q Consensus        58 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~  137 (459)
                      ++++++..+...+.+....... ..+++++|+.|.|    ..+ .++.+.+++.+...   ..+|++..|.+++|+++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~p----~~~-~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~   73 (364)
T PRK07865          3 VSARLPDFPWDTLAPAKATAAA-HPDGIVDLSVGTP----VDP-VPPVIQEALAAAAD---APGYPTTAGTPELREAIVG   73 (364)
T ss_pred             ccccCCCccHHHHHHHHHHHHh-cCCCEEEcCCCCC----CCC-CCHHHHHHHHHHHh---hCCCCCccCCHHHHHHHHH
Confidence            3455666566555554433332 3357899999987    333 26788888876543   2579888999999999999


Q ss_pred             HHhcCCCCc-cccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCH
Q 012647          138 LLFGADNSV-LKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF  216 (459)
Q Consensus       138 ~l~~~~~~~-~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~  216 (459)
                      ++...+|.. +++++|++  |+|+++++.++..++ .+.+||+|++++|+|+.|...++..|++++.++.         +
T Consensus        74 ~l~~~~~~~~~~~~~I~i--t~G~~~~i~~~~~~l-~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~---------~  141 (364)
T PRK07865         74 WLARRRGVTGLDPAAVLP--VIGSKELVAWLPTLL-GLGPGDVVVIPELAYPTYEVGARLAGATVVRADS---------L  141 (364)
T ss_pred             HHHHHcCCCCCCcccEEE--ccChHHHHHHHHHHH-cCCCCCEEEECCCCcccHHHHHHhcCCEEEecCC---------h
Confidence            998887876 88999999  999999999873222 1479999999999999999999999999887742         2


Q ss_pred             HHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH--hcCC
Q 012647          217 EGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA--TRGM  294 (459)
Q Consensus       217 e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~--~~~~  294 (459)
                      ++++.      ++++++++++||||||.+++.+++++|+++|++||++||+||+|.++.+++.  ....+....  ...+
T Consensus       142 ~~l~~------~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~~  213 (364)
T PRK07865        142 TELGP------QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAE--PVSILDPRVCGGDHT  213 (364)
T ss_pred             hhCCc------ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCC--CCccccccccCCccc
Confidence            22221      2567888889999999999999999999999999999999999999887531  111111100  1235


Q ss_pred             eEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 012647          295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAG  374 (459)
Q Consensus       295 ~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~  374 (459)
                      ++++++||||.|+++|+|+||+++   +++.++.+....    .....+++.+.|.++..+|.+.+       ++++.++
T Consensus       214 ~~i~~~S~SK~~~~~GlRiG~i~~---~~~~~~~~~~~~----~~~~~~~~~~~q~~~~~~l~~~~-------~~~~~~~  279 (364)
T PRK07865        214 GLLAVHSLSKQSNLAGYRAGFVAG---DPALVAELLEVR----KHAGMMVPAPVQAAMVAALGDDA-------HVREQRE  279 (364)
T ss_pred             eEEEEeechhccCCCceeeEEEec---CHHHHHHHHHHH----HhcCCCcCHHHHHHHHHHhCCHH-------HHHHHHH
Confidence            899999999999999999999865   888555544432    22233677889998888887642       3567888


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC--CHHHHHHHHhcccEEEcCCC----------cEEEccCChh
Q 012647          375 RIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--NKAQSDNMTNKWHVYMTKDG----------RISLAGLSLA  442 (459)
Q Consensus       375 ~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l--~~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e  442 (459)
                      .++++++.+.+.|+ +.|    +.+..+++|+|+|+.+  +...+.+.++++||.+.||.          ||+++. +++
T Consensus       280 ~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~  353 (364)
T PRK07865        280 RYARRRAVLRPALE-AAG----FRVDHSEAGLYLWATRGEDCWDTVAWLAERGILVAPGDFYGPAGAQHVRVALTA-TDE  353 (364)
T ss_pred             HHHHHHHHHHHHHH-HcC----CcccCCCccEEEEEeCCCCHHHHHHHHHHCCEEEeCccccCcCCCCEEEEEecC-CHH
Confidence            99999999999999 876    5777889999999865  33333344455799998861          999987 789


Q ss_pred             hHHHHHHHHH
Q 012647          443 KCEYLADAII  452 (459)
Q Consensus       443 ~i~~~~~~l~  452 (459)
                      ++++++++|+
T Consensus       354 ~~~~~~~~l~  363 (364)
T PRK07865        354 RIAAAVERLA  363 (364)
T ss_pred             HHHHHHHHhh
Confidence            9999999885

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=100.00  E-value=1.8e-44  Score=356.71  Aligned_cols=345  Identities=20%  Similarity=0.251  Sum_probs=276.0

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHH-HhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccC-ceEEeecccch
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENL-MLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT  161 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~-~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt  161 (459)
                      ++|||+.|.|......++ ++...+++.+ .........|++..|.++||+++|+++...++..++++ +|++  ++|++
T Consensus         2 ~~I~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~--~~G~~   78 (363)
T PF00155_consen    2 DVINLGSNAPLLLSQNPP-PPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILV--TSGAQ   78 (363)
T ss_dssp             TEEESSSSSTSSTTSSHH-HHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEE--ESHHH
T ss_pred             CEEEEECCCCCCcccccc-hHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEE--ecccc
Confidence            689999999844434433 5666666655 33333358999999999999999999987778888888 9999  88888


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCC---CcEEEEeCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG---GSFILLHGCA  238 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~---~~~~ii~~~p  238 (459)
                      +++..+..++. ..+||+|++++|+|+.|...++..|++++.+|++.++++.+|++.|++.+++.+.   +++++++++|
T Consensus        79 ~~~~~~~~~~~-~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p  157 (363)
T PF00155_consen   79 AALFLLLRLLK-INPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNP  157 (363)
T ss_dssp             HHHHHHHHHHH-SSTTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESS
T ss_pred             cchhhhhhccc-ccccccceecCCccccccccccccCceeeeccccccccccccccccccccccccccccccceeeeccc
Confidence            88888732221 4599999999999999999999999999999987678899999999999987321   3568888999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012647          239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (459)
Q Consensus       239 ~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (459)
                      |||||.+++.+++++|+++|++||++||+||+|.++.+++.  +..+....++...+++++.||||.||++|+|+||+++
T Consensus       158 ~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~  235 (363)
T PF00155_consen  158 NNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDP--DFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVA  235 (363)
T ss_dssp             BTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSS--HTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEE
T ss_pred             ccccccccccccccchhhhhcccccceeeeeceeccccCCC--ccCcccccccccccceeeeeccccccccccccccccc
Confidence            99999999999999999999999999999999999998642  2333234445566799999999999999999999966


Q ss_pred             EeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcc
Q 012647          319 VCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWS  398 (459)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~  398 (459)
                         +++..+.+..    ......  .+.+.|.++..++.+....   .+++++.+++++++++.+.+.|+ +.|    +.
T Consensus       236 ---~~~~~~~l~~----~~~~~~--~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~l~~~~~~l~~~L~-~~~----~~  298 (363)
T PF00155_consen  236 ---PPELIERLRR----FQRSGL--SSSPMQAAAAAALSDPELV---EKWLEELRERLRENRDLLREALE-EIG----IT  298 (363)
T ss_dssp             ---EHHHHHHHHH----HHHHTT--SSHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-HTT----SE
T ss_pred             ---hhhhhhhhhh----cccccc--ccchhhHHHHHhhhccccc---ccccccchhhHHHHHHHHHHHHH-Hhh----hh
Confidence               7775544443    332222  2777888888887766533   23578999999999999999999 776    68


Q ss_pred             cccCCcceeeecCCCH----HHHHHHHhcccEEEcCCC--------cEEEccCChhhHHHHHHHH
Q 012647          399 FILRQIGMFSFTGLNK----AQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAI  451 (459)
Q Consensus       399 ~~~~~~g~f~~~~l~~----~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e~i~~~~~~l  451 (459)
                      +..+++|+|+|+.++.    ++.++|++++||.+.||.        ||+++..+++++++++++|
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~a~~~~e~~~~~~~~l  363 (363)
T PF00155_consen  299 VLPPEAGFFLWVRLDPNDAEELAQELLEEYGILVRPGSYFGVPGYIRISLASHSEEDLEEALERL  363 (363)
T ss_dssp             EEHHSBSSEEEEEESHHHHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEGGCSCHHHHHHHHHHH
T ss_pred             eeeccCccEEEEEcccchHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEeccCCHHHHHHHHhhC
Confidence            8888899999997753    567888887799999963        9999656999999999986

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=2.9e-43  Score=348.58  Aligned_cols=333  Identities=16%  Similarity=0.227  Sum_probs=255.4

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CCCCCCCcccHHHHHHHHHHHhcCC--CCccccCceEEeeccc
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGAD--NSVLKEQRVATVQGLS  159 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~~~g~~~lr~aia~~l~~~~--~~~~~~~~i~~~~t~g  159 (459)
                      +..++|+.|+|    ..++ ++.+.+++.+.+.... ...| |..|.++||++||+++...+  +..+++++|++  |+|
T Consensus        28 ~~~~~l~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~Y-~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~i--t~G   99 (374)
T PRK02610         28 IQLDRLDTNEF----PYDL-PPDLKQKLAWLYQQGIESNRY-PDGGHEALKQAIAEYVNESAAGSSQITPANISV--GNG   99 (374)
T ss_pred             cceeEecCCCC----CCCC-CHHHHHHHHHHHhhcccccCC-CCCchHHHHHHHHHHhCccccccCCCCHHHEEE--cCC
Confidence            35889999988    4443 7899999988775432 2567 55799999999999987765  56788999999  999


Q ss_pred             chhHHHHHHHHHHHhCCCC-EEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC-CCCcEEEEeCC
Q 012647          160 GTGSLRLAAALIERYFPGA-KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA-PGGSFILLHGC  237 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd-~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~-~~~~~~ii~~~  237 (459)
                      +++++.++  +...+.+|| +|++++|+|..|...++.+|++++.+|++ ++++++|+++++++++.. ..+++++++++
T Consensus       100 a~~al~~~--~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~  176 (374)
T PRK02610        100 SDELIRSL--LIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGRD-PETFEIDLAAAQSAIEQTQNPPVRVVFVVH  176 (374)
T ss_pred             hHHHHHHH--HHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecCC-cccCCCCHHHHHHHHHhhcCCCceEEEEeC
Confidence            99999876  344466776 89999999999999999999999999984 446899999999988631 12678888899


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEE
Q 012647          238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (459)
Q Consensus       238 p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (459)
                      ||||||.+++.+++++|+++|  ++++||+||+|.+|.+..      .+.. +...+++++++||||.||+||+|+||++
T Consensus       177 P~NPTG~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~------~~~~-~~~~~~~ivi~SfSK~~g~~GlRiG~~v  247 (374)
T PRK02610        177 PNSPTGNPLTAAELEWLRSLP--EDILVVIDEAYFEFSQTT------LVGE-LAQHPNWVILRTFSKAFRLAAHRVGYAI  247 (374)
T ss_pred             CCCCCCCCCCHHHHHHHHhcc--CCcEEEEeccccccCccc------hHHH-HhcCCCEEEEEecchhccCcccceeeee
Confidence            999999999999999999987  499999999999986421      1222 2344678999999999999999999996


Q ss_pred             EEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Q 012647          318 VVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDW  397 (459)
Q Consensus       318 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~  397 (459)
                      +   ++++++.+    ..... .+ +.+.++|.++..+|++.+      .+++.+++.+++ ++.+.+.|+ +++   ++
T Consensus       248 ~---~~~l~~~l----~~~~~-~~-~~~~~~q~a~~~~l~~~~------~~~~~~~~~~~~-r~~l~~~L~-~~~---~~  307 (374)
T PRK02610        248 G---HPELIAVL----EKVRL-PY-NLPSFSQLAAQLALEHRQ------ELLAAIPEILQE-RDRLYQALQ-ELP---QL  307 (374)
T ss_pred             c---CHHHHHHH----HHhcC-CC-CCCHHHHHHHHHHhcCHH------HHHHHHHHHHHH-HHHHHHHHH-hCC---Cc
Confidence            5   77744444    33322 23 567889999988887642      223444555544 677888888 763   14


Q ss_pred             ccccCCcceeeecCC----CHHHHHHHHhcccEEEcCCC---cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          398 SFILRQIGMFSFTGL----NKAQSDNMTNKWHVYMTKDG---RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       398 ~~~~~~~g~f~~~~l----~~~~~~~ll~~~gI~v~~gg---Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      .+ .|++|+|+|+.+    +.+.+...++++||.+.++.   |||++.  .+++++++++|+++++++
T Consensus       308 ~~-~p~~g~f~~~~l~~~~~~~~~~~~l~~~gi~v~~~~~~lRls~~~--~~~~~~~l~~l~~~l~~~  372 (374)
T PRK02610        308 RV-WPSAANFLYLRLSQDAALAALHQALKAQGTLVRHTGGGLRITIGT--PEENQRTLERLQAALTQL  372 (374)
T ss_pred             Ee-CCCcceEEEEeCCCCCCHHHHHHHHHHCCEEEEeCCCeEEEeCCC--HHHHHHHHHHHHHHHhhc
Confidence            54 478899999865    33333333455799998753   999985  567899999999998765

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=100.00  E-value=7.6e-43  Score=323.19  Aligned_cols=347  Identities=17%  Similarity=0.153  Sum_probs=290.4

Q ss_pred             CCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        81 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      ++++++.+.+.+.    +++. +|.|.+|+++.++.+. ++|+  .+.+++-+++++|...+++..+.++.|++  +.|.
T Consensus        23 g~~DvlPmWVADM----Df~~-pp~i~~Al~~rvdhGv-fGY~--~~~~~~~~ai~~w~~~r~~~~i~~e~i~~--~p~V   92 (388)
T COG1168          23 GNEDVLPMWVADM----DFPT-PPEIIEALRERVDHGV-FGYP--YGSDELYAAIAHWFKQRHQWEIKPEWIVF--VPGV   92 (388)
T ss_pred             CCCCcceeeeecc----cCCC-CHHHHHHHHHHHhcCC-CCCC--CCCHHHHHHHHHHHHHhcCCCCCcceEEE--cCcc
Confidence            3579999999986    5664 8999999999998875 8885  67788999999999999999999999999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeee-cCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCC
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~-~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~  239 (459)
                      -.++.++.+.  .-.|||.|++..|.|+++....+..|.+++..|+. +++.+.+|++.|++++.+  ++.+++++||||
T Consensus        93 Vpgi~~~I~~--~T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~--~~vkl~iLCnPH  168 (388)
T COG1168          93 VPGISLAIRA--LTKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVD--ERVKLFILCNPH  168 (388)
T ss_pred             hHhHHHHHHH--hCcCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhc--CCccEEEEeCCC
Confidence            9999998332  24599999999999999999999999999999986 344577799999999987  467899999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH-HhcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012647          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF-ATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (459)
Q Consensus       240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (459)
                      ||||.+++++++++|+++|.+||+.||+||+++++.+.+.  .+.+...+ ..-.++.+.+.|-||+|+++|+.++++  
T Consensus       169 NP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~--~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~--  244 (388)
T COG1168         169 NPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGH--KHIPFASLSERFADNSITLTSASKTFNLAGLKCAYI--  244 (388)
T ss_pred             CCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCC--CccchhhcChhhhcceEEEeeccccccchhhhheeE--
Confidence            9999999999999999999999999999999999998752  23232222 122368999999999999999999999  


Q ss_pred             EeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcc
Q 012647          319 VCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWS  398 (459)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~  398 (459)
                      +..++++.+++.+.+..   ....+++.++..+...+.+++   +.|   +++..+.++.+++++.+.|. +. +|+ ++
T Consensus       245 Ii~n~~lr~~~~~~l~~---~~~~~~n~lg~~A~~aAY~~G---~~W---Ld~L~~yl~~N~~~~~~~l~-~~-~P~-v~  312 (388)
T COG1168         245 IISNRELRAKFLKRLKR---NGLHGPSALGIIATEAAYNQG---EPW---LDELLEYLKDNRDYVADFLN-KH-LPG-VK  312 (388)
T ss_pred             EecCHHHHHHHHHHHHH---hcCCCCchHHHHHHHHHHHhc---hHH---HHHHHHHHHHHHHHHHHHHH-hh-CCC-cE
Confidence            55777766777777665   334477888877777777665   235   67888999999999999999 64 222 78


Q ss_pred             cccCCcceeeecCC-----CH-HHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          399 FILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       399 ~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      +..|+|.|.+|+++     +. +..+.++++.+|.+.+|        |  |+++++ +.+-+++++++|+.++++.
T Consensus       313 v~~p~gTYL~WLD~r~l~l~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~ac-pr~~L~eal~ri~~al~~~  387 (388)
T COG1168         313 VTEPQGTYLAWLDCRELGLDDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFAC-PRAILEEALERLKRALKKR  387 (388)
T ss_pred             EecCCCceeeeeeccccCCChHHHHHHHHHhhcEeccCCCccCcCCCceEEEecCC-CHHHHHHHHHHHHHHHhcc
Confidence            99999999999854     54 66788999999999998        2  999999 9999999999999998865

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=1.4e-43  Score=348.73  Aligned_cols=323  Identities=15%  Similarity=0.159  Sum_probs=255.4

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      ..++|+|+.|++    .+++ ++.+++++.+.+.. . ..| |..|.++||+++++++.      +++++|++  |+|++
T Consensus        28 ~~~~i~l~~nen----~~~~-~~~v~~a~~~~~~~-~-~~Y-p~~g~~~Lr~aia~~~~------~~~~~I~v--t~Gs~   91 (366)
T PRK01533         28 DHSFVKLASNEN----PFGC-SPRVLDELQKSWLD-H-ALY-PDGGATTLRQTIANKLH------VKMEQVLC--GSGLD   91 (366)
T ss_pred             CCceEEeCCCCC----CCCC-CHHHHHHHHHHHHh-c-CcC-CCCCHHHHHHHHHHHhC------CCcceEEE--CCCHH
Confidence            357899999987    4544 78899988876643 2 345 77899999999999973      34899999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      +++.++.  ...+.+||+|++++|+|..|...++..|++++.+|++   ++++|++.+++++++   +++++++|+||||
T Consensus        92 e~i~~~~--~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~---~~~~d~~~l~~~~~~---~~~~v~i~~P~NP  163 (366)
T PRK01533         92 EVIQIIS--RAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALN---NGVYDLDEISSVVDN---DTKIVWICNPNNP  163 (366)
T ss_pred             HHHHHHH--HHhcCCCCEEEEcCCcHHHHHHHHHHcCCEEEEeecC---CCCcCHHHHHHHhCc---CCcEEEEeCCCCC
Confidence            9999984  3346799999999999999999999999999999983   357999999998875   6778888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+++.+++++|+++|++++ ++|+||+|.++.+++   +..+.....+..+++++++||||.||++|+|+||+++   
T Consensus       164 TG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~---~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~---  236 (366)
T PRK01533        164 TGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAK---DFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVG---  236 (366)
T ss_pred             CCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccc---cCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhC---
Confidence            999999999999999998876 567799999887542   1112222334557899999999999999999999965   


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  401 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  401 (459)
                      +++.++.+    .... ..+ +++.++|.++..+|++.++       +++.++.++++++++.+.++ .+|    +++.+
T Consensus       237 ~~~~~~~l----~~~~-~~~-~~~~~~q~aa~~~l~~~~~-------~~~~~~~~~~~r~~~~~~l~-~~g----~~~~~  298 (366)
T PRK01533        237 HEELIEKL----NVVR-LPF-NVSSLAQKAATIAFGDDEF-------IEEIVRVNTEGLRQYESFCK-ENE----IPFYQ  298 (366)
T ss_pred             CHHHHHHH----HHhc-CCC-CcCHHHHHHHHHHhCCHHH-------HHHHHHHHHHHHHHHHHHHH-hCC----CccCC
Confidence            77854444    3332 223 7889999999999987544       35566777788888888888 776    56777


Q ss_pred             CCcceeeecCC-CH-HHHHHHHhcccEEEcCCC---cEEEccCChhhHHHHHHHHHHHHhh
Q 012647          402 RQIGMFSFTGL-NK-AQSDNMTNKWHVYMTKDG---RISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       402 ~~~g~f~~~~l-~~-~~~~~ll~~~gI~v~~gg---Ris~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                      ++ |.|+|+.+ +. ++.+.|++ +||.|++-.   |||++  +.++++.++++|+++++.
T Consensus       299 ~~-~nf~~~~~~~~~~~~~~l~~-~GI~Vr~~~~~iRis~~--~~~~~~~l~~al~~~~~~  355 (366)
T PRK01533        299 SQ-TNFIFLPVENGGEIYEACAH-AGFIIRPFPNGVRITVG--TREQNEGVISVLQQHFEN  355 (366)
T ss_pred             Cc-CcEEEEeCCCHHHHHHHHHH-CCcEEccCCCceEEeCC--CHHHHHHHHHHHHHHHHh
Confidence            76 55788776 33 44555554 799998753   99988  679999999999998864

>PRK06836 aspartate aminotransferase; Provisional

Probab=100.00  E-value=9.2e-43  Score=347.38  Aligned_cols=338  Identities=19%  Similarity=0.236  Sum_probs=269.9

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      .+++++|+.|.|    ..++ ++.+.+++.+.+...  ....|.+..|.+++|+++++++...++..+++++|++  |+|
T Consensus        32 ~~~~~~l~~g~p----~~~~-~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~--t~G  104 (394)
T PRK06836         32 ADNVFDFSLGNP----SVPP-PAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVM--TCG  104 (394)
T ss_pred             CCCeEEecCcCC----CCCC-CHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEE--eCC
Confidence            357899999987    3333 788999888877532  2377989999999999999999888888888999999  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCC
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~  239 (459)
                      ++++++++.  ...+.+||.|++++|+|..|...++..|++++.+|++ ++++++|++++++++++   +++++++++||
T Consensus       105 ~~~al~~~~--~~l~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~-~~~~~~d~~~l~~~~~~---~~~~v~~~~p~  178 (394)
T PRK06836        105 AAGALNVAL--KAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTD-TDTFQPDLDALEAAITP---KTKAVIINSPN  178 (394)
T ss_pred             hHHHHHHHH--HHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecC-CccCcCCHHHHHhhcCc---CceEEEEeCCC
Confidence            999999983  3346799999999999999999999999999999985 34578999999999975   67888889999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHh------cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc
Q 012647          240 NPTGIDPTPEQWEKIADVIQE------KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI  313 (459)
Q Consensus       240 NPTG~~~s~~~l~~i~~l~~~------~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri  313 (459)
                      ||||.+++.+++++|+++|++      ||++||+||+|.++.+++.  ....+   ....+++++++||||.||+||+|+
T Consensus       179 NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~---~~~~~~~i~~~S~SK~~~~pGlRi  253 (394)
T PRK06836        179 NPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGA--EVPYI---FKYYDNSIVVYSFSKSLSLPGERI  253 (394)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCC--CCCCh---HHccCcEEEEecchhhccCcceee
Confidence            999999999999999999999      8999999999999987531  11121   233468999999999999999999


Q ss_pred             ceEEEEeCChhHHH--HHHHHHHhhccc-cccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012647          314 GAMNVVCSSSDLAA--RVKSQLKRLARP-MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK  390 (459)
Q Consensus       314 G~~~~v~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  390 (459)
                      ||+++   +++..+  .+...+....+. .+.+++.+.|.++..++++..           .++.++++++.+.+.|+ +
T Consensus       254 G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-----------~~~~~~~~r~~l~~~L~-~  318 (394)
T PRK06836        254 GYIAV---NPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDATV-----------DVSIYKRNRDLLYDGLT-E  318 (394)
T ss_pred             EEEec---CHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCChH-----------HHHHHHHHHHHHHHHHH-h
Confidence            99865   555322  122222222221 123677888999888887641           24677888999999999 8


Q ss_pred             cCCCCCcccccCCcceeeecCC---CH-HHHHHHHhcccEEEcCCC--------cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          391 DKSGKDWSFILRQIGMFSFTGL---NK-AQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       391 ~g~~~~~~~~~~~~g~f~~~~l---~~-~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      .|    +.+..+++|+|+|+.+   +. ++++. ++++||.+.||.        ||+++. +++++++++++|++++++.
T Consensus       319 ~g----~~~~~~~gg~~~~~~~~~~~~~~~~~~-l~~~gv~v~~g~~f~~~~~iRi~~~~-~~~~~~~~i~~l~~~l~~~  392 (394)
T PRK06836        319 LG----FECVKPQGAFYLFPKSPEEDDVAFCEK-AKKHNLLLVPGSGFGCPGYFRLSYCV-DTETIERSLPAFEKLAKEY  392 (394)
T ss_pred             CC----CEeecCCceEEEEEeCCCCCHHHHHHH-HHhCCEEEECchhcCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHh
Confidence            76    6778889999999854   33 44544 455799999982        999985 9999999999999999764

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=100.00  E-value=2e-43  Score=354.96  Aligned_cols=339  Identities=12%  Similarity=0.073  Sum_probs=249.9

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHH-HHhcCCCCc-cccC--ceEEeeccc
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE-LLFGADNSV-LKEQ--RVATVQGLS  159 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~-~l~~~~~~~-~~~~--~i~~~~t~g  159 (459)
                      ++|+|+.|+|    ++++ ++.+ .++.+.+..   ..|++..|..++|+++++ ++....+.. ..++  +|++  |.|
T Consensus        95 ~~i~l~~g~p----~~~~-~~~~-~~~~~~~~~---~~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~i--t~G  163 (521)
T TIGR03801        95 DIISYVIDQL----GFDP-DAFL-YEMCDGIIG---DNYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFA--VEG  163 (521)
T ss_pred             HHHhhcCCCC----CCCC-CHHH-HHHHHHhhc---CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEE--eCC
Confidence            4799999999    6663 4444 555554422   358777788888888875 554443332 2333  8999  999


Q ss_pred             chhHHHHHHHHHH---HhCCCCEEEEcCCCCcchHHHhhhC--CCCeeeeeeecCCC-----CCCCHHHHHHHHHcCCCC
Q 012647          160 GTGSLRLAAALIE---RYFPGAKVLISSPTWGNHKNIFNDA--RVPWSEYRYYDPKT-----VGLDFEGMIADIKAAPGG  229 (459)
Q Consensus       160 gt~a~~l~~~~~~---~~~~gd~Vlv~~p~y~~~~~~~~~~--G~~v~~v~~~~~~~-----~~~d~e~l~~~i~~~~~~  229 (459)
                      +++++..+...+.   .+.|||+|++++|+|+.|...++..  |++++.++.+++++     |.+|++.+++++++   +
T Consensus       164 at~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~---~  240 (521)
T TIGR03801       164 GTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDP---S  240 (521)
T ss_pred             HHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCC---C
Confidence            9999999743321   4679999999999999999987765  67777777753333     88999999987664   7


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc--CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc
Q 012647          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEK--NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (459)
Q Consensus       230 ~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~--~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (459)
                      +++++++|||||||.+++.+++++|+++|++|  +++||+||+|..|.+.     ..++...  ..+++++++||||.||
T Consensus       241 ~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~-----~~sl~~~--~~~~vI~v~SfSK~fg  313 (521)
T TIGR03801       241 IKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDD-----FRSLFAE--LPYNTIGVYSFSKYFG  313 (521)
T ss_pred             CcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhccc-----ccchhhh--CCCCEEEEEcchhhcc
Confidence            88888899999999999999999999999986  9999999999998742     1232222  2358999999999999


Q ss_pred             cCCCCcceEEEEeCChhHHHHHH--------------------------------HHHHhhccccccCCchHHHH--H--
Q 012647          308 LYAERIGAMNVVCSSSDLAARVK--------------------------------SQLKRLARPMYSNPPVHGAR--I--  351 (459)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~--~--  351 (459)
                      ++|||+||+++  .+....++++                                .....++...+.+.+.+.|.  +  
T Consensus       314 ~~G~RlG~i~~--~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~  391 (521)
T TIGR03801       314 ATGWRLGTIAL--HKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALF  391 (521)
T ss_pred             Cchhhhhhhhc--CchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHH
Confidence            99999999954  3332222222                                22233344444455665554  3  


Q ss_pred             -HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCC-----------------
Q 012647          352 -VANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN-----------------  413 (459)
Q Consensus       352 -~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~-----------------  413 (459)
                       +..++..+      .++++++++.++++++.+.+.|. - .    +...+++|+||+|+++.                 
T Consensus       392 a~~all~~~------~~y~~~~~~~~~~R~~~l~~~Lg-~-~----~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~  459 (521)
T TIGR03801       392 SLFALMDKE------NAYKAETKDICRRREKLLFRGLG-L-P----LQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKK  459 (521)
T ss_pred             HHHHHhccc------hhHHHHHHHHHHHHHHHHHHhcC-C-C----CcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhc
Confidence             33445433      23467888999999999988874 2 1    24467899999998653                 


Q ss_pred             ----HHHHHHHHhcccEEEcCCC---------cEEEccCChhhHHHHHHHHHHHHhh
Q 012647          414 ----KAQSDNMTNKWHVYMTKDG---------RISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       414 ----~~~~~~ll~~~gI~v~~gg---------Ris~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                          .+++.+|++++||.+.||.         |||++.+++++++++.++|++++++
T Consensus       460 ~~~~~~~~~~L~~e~gV~v~PG~~Fg~~~~~vRisla~l~~~~~~~~~~rl~~~~~~  516 (521)
T TIGR03801       460 NYSPVDVLFRLAEETGIVLLPGGGFGGPEWSVRVSLANLNEYDYAEIGRAIRKILDE  516 (521)
T ss_pred             cCCHHHHHHHHHHhCCEEEeCchhcCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence                2467789999999999983         9999988999999999999998875

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=100.00  E-value=1.4e-42  Score=341.56  Aligned_cols=332  Identities=14%  Similarity=0.116  Sum_probs=254.3

Q ss_pred             cchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCc-cc
Q 012647           70 ILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSV-LK  148 (459)
Q Consensus        70 i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~-~~  148 (459)
                      +.+.....+. ...++++|+.|.|    ..++ ++.+.+++.+...   ...|++..|.++||+++++++...++.. ++
T Consensus         9 ~~~~~~~~~~-~~~~~i~l~~~~p----~~~~-~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~   79 (357)
T TIGR03539         9 LAPYKAKAAS-HPDGIVDLSVGTP----VDPV-PPLIRAALAAAAD---APGYPQTWGTPELREAIVDWLERRRGVPGLD   79 (357)
T ss_pred             HHHHHHHhhh-CCCCeEEccCCCC----CCCC-CHHHHHHHHHHHh---hCCCCcccCCHHHHHHHHHHHHHhcCCCCCC
Confidence            3334444433 3457899999987    3333 6778888877653   3679889999999999999998887886 88


Q ss_pred             cCceEEeecccchhHHHHHHHHHHH-hCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCC
Q 012647          149 EQRVATVQGLSGTGSLRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP  227 (459)
Q Consensus       149 ~~~i~~~~t~ggt~a~~l~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~  227 (459)
                      +++|++  |+|+++++.++.  ... +.+||.|++++|+|+.|...++..|++++.++         |++.+.    .  
T Consensus        80 ~~~I~i--t~G~~~~i~~~~--~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~---------~~~~l~----~--  140 (357)
T TIGR03539        80 PTAVLP--VIGTKELVAWLP--TLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAAD---------DPTELD----P--  140 (357)
T ss_pred             cCeEEE--ccChHHHHHHHH--HHHcCCCCCEEEECCCCcHHHHHHHHhcCCEEeccC---------ChhhcC----c--
Confidence            999999  999999999873  223 46999999999999999999999999888763         222222    1  


Q ss_pred             CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH--HhcCCeEEEEEcCCcC
Q 012647          228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF--ATRGMELLVAQSYSKN  305 (459)
Q Consensus       228 ~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~S~SK~  305 (459)
                      ++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.  ....+...  ....+++++++||||.
T Consensus       141 ~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~~~vi~~~S~SK~  218 (357)
T TIGR03539       141 VGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGR--PVSILDPRVCGGDHTGLLAVHSLSKR  218 (357)
T ss_pred             cCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCC--CccceecccCCCccccEEEEeccccc
Confidence            2677888899999999999999999999999999999999999998887531  11111000  0123579999999999


Q ss_pred             cccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          306 LGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD  385 (459)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  385 (459)
                      |+++|+|+||+++   +++.++++.+    .......+++.++|.++..+|.+.       +++++.++.++++++.+.+
T Consensus       219 ~~~~G~R~G~~i~---~~~~~~~~~~----~~~~~~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~  284 (357)
T TIGR03539       219 SNLAGYRAGFVAG---DPALVAELLT----VRKHAGLMVPAPVQAAMVAALGDD-------GHVAEQKARYAARRAQLKP  284 (357)
T ss_pred             cCCCceeEEEEec---CHHHHHHHHH----HHhhcccCCCHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHHHH
Confidence            9999999999965   7785555443    222333467888899888888763       2356788899999999999


Q ss_pred             HHhhccCCCCCcccccCCcceeeecCC--CHHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHH
Q 012647          386 SLSAKDKSGKDWSFILRQIGMFSFTGL--NKAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAI  451 (459)
Q Consensus       386 ~L~~~~g~~~~~~~~~~~~g~f~~~~l--~~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l  451 (459)
                      .|+ +.|    +.+..+++|+|+|+.+  +...+...++++||.+.||.          |||++. +++++++++++|
T Consensus       285 ~L~-~~g----~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~~i~~~~~~l  356 (357)
T TIGR03539       285 ALE-KAG----FRIDHSEAGLYLWATRGEDAWDTVDRLAELGILVAPGDFYGPAGSQHVRVALTA-TDERIAAAVARL  356 (357)
T ss_pred             HHH-HcC----CCCcCCCccEEEEEECCCCHHHHHHHHHhCCEEECCccccCCCCCCeEEEEecC-CHHHHHHHHHhh
Confidence            999 776    5778889999999865  33333344456799999862          999998 788999998876

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=3.9e-42  Score=340.18  Aligned_cols=328  Identities=16%  Similarity=0.177  Sum_probs=258.4

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhc--CCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER--GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~--~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      ..++|+.|+|    .+++ ++.+.+++.+.+..  .....| |..|.++||+++|+++...+|..+++++|++  |+|++
T Consensus        27 ~~i~l~~~~~----~~~~-~~~~~~al~~~l~~~~~~~~~Y-~~~g~~~lr~aia~~~~~~~~~~~~~~~I~i--t~G~~   98 (368)
T PRK03317         27 VPVRLNTNEN----PYPP-SPALVADIAEAVAEAAAGLNRY-PDRDAVALRADLAAYLTAQTGVGLTVENVWA--ANGSN   98 (368)
T ss_pred             ceeEecCCCC----CCCC-CHHHHHHHHHHHhhhhhhhccC-CCCchHHHHHHHHHHhhhhccCCCChhhEEE--CCCHH
Confidence            5689999987    4443 88899999887643  123567 5578999999999999888888889999999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      +++.++.  ...+.+||.|+++.|+|..|...++..|.+++.++.  ++++++|+++++++++.  .+++++++++||||
T Consensus        99 ~~l~~~~--~~~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~~~~--~~~~~i~l~~p~NP  172 (368)
T PRK03317         99 EILQQLL--QAFGGPGRTALGFVPSYSMHPIIARGTHTEWVEGPR--AADFTLDVDAAVAAIAE--HRPDVVFLTSPNNP  172 (368)
T ss_pred             HHHHHHH--HHhcCCCCEEEEeCCChHHHHHHHHhcCCeeEEccc--CCCCCCCHHHHHHHHhc--cCCCEEEEeCCCCC
Confidence            9999983  334679999999999999999999999999988887  44688999999999875  25567778999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+++.+++++|+++|   ++++|+||+|.++.+.+.   . +...+.+..+++++++||||.||++|+|+||+++   
T Consensus       173 tG~~~~~~~l~~l~~~~---~~~lI~DE~y~~~~~~~~---~-~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~---  242 (368)
T PRK03317        173 TGTALPLDDVEAILDAA---PGIVVVDEAYAEFRRSGT---P-SALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAA---  242 (368)
T ss_pred             CCCCCCHHHHHHHHHHC---CceEEEeCCchhhcccCC---c-CHHHHHHhCCCEEEEEechhhhccchhhhhhhhC---
Confidence            99999999999998877   699999999999876431   1 2222334456899999999999999999999865   


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  401 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  401 (459)
                      +++.++.+    .... ..+ +.+.++|.++..+|++.+       .+.+.+++++++++.+.+.|+ +.|    +.+..
T Consensus       243 ~~~~~~~l----~~~~-~~~-~~s~~~~~a~~~~l~~~~-------~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~  304 (368)
T PRK03317        243 APAVVDAL----RLVR-LPY-HLSAVTQAAARAALRHAD-------ELLASVAALRAERDRVVAWLR-ELG----LRVAP  304 (368)
T ss_pred             CHHHHHHH----HhcC-CCC-CCCHHHHHHHHHHhhCHH-------HHHHHHHHHHHHHHHHHHHHH-HCC----CEeCC
Confidence            88844444    3332 223 677888888888887532       123444667888999999999 876    57778


Q ss_pred             CCcceeeecCC-CH-HHHHHHHhcccEEEcCCC-----cEEEccCChhhHHHHHHHHHHHHh
Q 012647          402 RQIGMFSFTGL-NK-AQSDNMTNKWHVYMTKDG-----RISLAGLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       402 ~~~g~f~~~~l-~~-~~~~~ll~~~gI~v~~gg-----Ris~~~~~~e~i~~~~~~l~~~~~  456 (459)
                      ++++|++|..+ +. ++.+.|++ +||.+.+.+     ||+++  +.++++.++++|+++++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~iRi~~~--~~~~~~~~~~~l~~~~~  363 (368)
T PRK03317        305 SDANFVLFGRFADRHAVWQGLLD-RGVLIRDVGIPGWLRVTIG--TPEENDAFLAALAEVLA  363 (368)
T ss_pred             CCCcEEEEeccCCHHHHHHHHHH-CCEEEEeCCCCCeEEEecC--CHHHHHHHHHHHHHHHH
Confidence            88998888654 33 44555554 699998865     99987  66889999999998875

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=8.9e-42  Score=336.21  Aligned_cols=318  Identities=18%  Similarity=0.201  Sum_probs=249.8

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +.++|+|+.|++    .+.+ +|.+.+++.+.+..  ...|+ ..|.++||+++++++.      +++++|++  |+|++
T Consensus        29 ~~~~i~l~~~~~----~~~~-~~~~~~~~~~~~~~--~~~Y~-~~~~~~lr~~ia~~~~------~~~~~I~i--t~G~~   92 (357)
T PRK14809         29 PDDLVKLSSNEN----PHGP-SPAAVEAIREAAER--VHSYP-KASHADLTAALADRWD------VSPEQVWL--ANGGD   92 (357)
T ss_pred             ccceeEecCCCC----CCCC-CHHHHHHHHHHHhh--hhcCC-CCCHHHHHHHHHHHhC------CCcceEEE--CCCHH
Confidence            357999999987    4443 67888888877653  36784 5789999999999973      45899999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      ++++++.  ...+.+||.|++++|+|..|....+..|++++.+|+..++++.+|++.+++.+.    ++++++++|||||
T Consensus        93 ~al~~~~--~~~~~~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~----~~k~i~l~~p~NP  166 (357)
T PRK14809         93 GALDYLA--RAMLDPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAYD----GERIVYLTSPHNP  166 (357)
T ss_pred             HHHHHHH--HHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhhc----CCcEEEEeCCCCC
Confidence            9999983  334679999999999999999888899999999998654567788888777652    4567778999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+++.+++++|+++|++ +++||+||+|.++.+.+   .  .+ ......+++++++||||.||++|+|+||+++   
T Consensus       167 TG~~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~---~--~~-~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~---  236 (357)
T PRK14809        167 TGSEIPLDEVEALAERTDE-ETLVVVDEAYGEFAERP---S--AV-ALVEERDDVAVLRTFSKAYGLAGLRLGYAVV---  236 (357)
T ss_pred             CCcCCCHHHHHHHHHhCcc-CcEEEEechhhhccCCc---h--hH-HHHhhCCCEEEEecchhHhcCcchhheeeec---
Confidence            9999999999999999975 78999999999998531   1  12 2234457899999999999999999999966   


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  401 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  401 (459)
                      +++.++++.    +.. . ..+++.++|.++..+|.+.+       ++++.++.++++++.+.+.|. ..+        .
T Consensus       237 ~~~~~~~~~----~~~-~-~~~~~~~~~~~a~~~l~~~~-------~~~~~~~~~~~~r~~l~~~L~-~~~--------~  294 (357)
T PRK14809        237 PEEWADAYA----RVN-T-PFAASELACRAGLAALDDDE-------HVERTVETARWAREYIREELD-APT--------W  294 (357)
T ss_pred             CHHHHHHHH----HhC-C-CCCCCHHHHHHHHHHhCCHH-------HHHHHHHHHHHHHHHHHHHhc-Ccc--------C
Confidence            777544443    332 2 23567888888888887643       356778888899999999887 542        2


Q ss_pred             CCcceeeecCC-C-HHHHHHHHhcccEEEcCCC--------cEEEccCChhhHHHHHHHHHHHHh
Q 012647          402 RQIGMFSFTGL-N-KAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       402 ~~~g~f~~~~l-~-~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e~i~~~~~~l~~~~~  456 (459)
                      +.+|+|+|+.+ + .++.+.+ +++||.+.||.        ||+++  +.+++++++++|+++++
T Consensus       295 ~~~g~f~~~~~~~~~~~~~~l-~~~gv~v~~g~~f~~~~~iRls~~--~~~~~~~~l~~L~~~l~  356 (357)
T PRK14809        295 ESAGNFVLAEVGDASAVAEAA-QERGVIVRDCTSFGLPECIRITCG--TREETERAVEVLNEVLA  356 (357)
T ss_pred             CCCCCEEEEECCCHHHHHHHH-HHCCEEEEECccCCCCCeEEEecC--CHHHHHHHHHHHHHHhc
Confidence            46788999876 3 3445555 55799999973        99987  56899999999998875

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=1.3e-41  Score=334.14  Aligned_cols=323  Identities=18%  Similarity=0.191  Sum_probs=252.9

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      .++++|+.|.+    ..++ ++.+.+++.+.+..  ...| |..+.++||+++|+++.      +++++|++  |+|+++
T Consensus        19 ~~~~~l~~~~~----~~~~-p~~~~~a~~~~~~~--~~~Y-~~~~~~~lr~~ia~~~~------~~~~~i~i--t~Ga~~   82 (354)
T PRK06358         19 NMILDFSANIN----PLGV-PESLKQAITENLDK--LVEY-PDPDYLELRKRIASFEQ------LDLENVIL--GNGATE   82 (354)
T ss_pred             cceEEecCCCC----CCCC-CHHHHHHHHHHHHh--hhcC-CCccHHHHHHHHHHHhC------CChhhEEE--CCCHHH
Confidence            45899999986    2332 78899988887643  3668 45578999999999973      45899999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT  242 (459)
                      ++.++..   .+.+ +.|++++|+|+.|...++..|++++.+|+++++++.+| +++++.+..   +++++++++|||||
T Consensus        83 ~l~~~~~---~~~~-~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~---~~~~v~~~~P~NPt  154 (354)
T PRK06358         83 LIFNIVK---VTKP-KKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIKE---EIDLVFLCNPNNPT  154 (354)
T ss_pred             HHHHHHH---HhCC-CcEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhcc---CCCEEEEeCCCCCC
Confidence            9998733   3444 68999999999999999999999999999655567899 666666654   56777789999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCC
Q 012647          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (459)
Q Consensus       243 G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (459)
                      |.+++.+++++|+++|++|+++||+||+|.++.+++   ...+.....+..+++++++||||.||++|+|+||++  +++
T Consensus       155 G~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~---~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv--~~~  229 (354)
T PRK06358        155 GQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEEN---ETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGL--TSN  229 (354)
T ss_pred             CCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCc---cchhHHHhccCCCCEEEEEechhhccCcchhheeee--cCC
Confidence            999999999999999999999999999999998753   122222233455789999999999999999999994  445


Q ss_pred             hhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC
Q 012647          323 SDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR  402 (459)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~  402 (459)
                      +...+.    +..... .+ +.+.++|.++..+|++..       ++++.++.++++++.+.+.|+ +++   ++++..+
T Consensus       230 ~~~~~~----~~~~~~-~~-~~~~~~q~~~~~~l~~~~-------~~~~~~~~~~~~r~~l~~~L~-~~~---~~~~~~~  292 (354)
T PRK06358        230 KNLAEK----LLQMRE-PW-SINTFADLAGQTLLDDKE-------YIKKTIQWIKEEKDFLYNGLS-EFK---GIKVYKP  292 (354)
T ss_pred             HHHHHH----HHHhCC-CC-cchHHHHHHHHHHhccHH-------HHHHHHHHHHHHHHHHHHHHh-cCC---CcEEcCC
Confidence            663333    333332 23 678888999988887642       357788888999999999999 763   1566777


Q ss_pred             CcceeeecCCC--HHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHHH
Q 012647          403 QIGMFSFTGLN--KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       403 ~~g~f~~~~l~--~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~~  455 (459)
                      +|+ |+|+.+.  .++.++|++ +||.+.||.          ||+++  +.++.++++++|++++
T Consensus       293 ~g~-f~~~~~~~~~~~~~~l~~-~gI~v~~~~~f~~~~~~~iRls~~--~~~~~~~l~~~l~~~~  353 (354)
T PRK06358        293 SVN-FIFFKLEKPIDLRKELLK-KGILIRSCSNYRGLDENYYRVAVK--SREDNKKLLKALEVIL  353 (354)
T ss_pred             cce-EEEEEcCchHHHHHHHHH-CCeEEEECCCCCCCCCCEEEEEeC--CHHHHHHHHHHHHHHh
Confidence            655 7888763  455667776 699999862          99987  6789999999998875

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=100.00  E-value=1.6e-41  Score=341.36  Aligned_cols=343  Identities=16%  Similarity=0.111  Sum_probs=253.6

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC----CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeec
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG----ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~----~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (459)
                      ++++|+|+.|.| +  ..+++.+.+.+++.+.+...    ....|++..|.++||++||+++...+|..+++++|++  |
T Consensus        29 ~~~~i~l~~g~p-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~i--t  103 (416)
T PRK09440         29 TPGAIMLGGGNP-A--HIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIAL--T  103 (416)
T ss_pred             CCCceeccCCCC-C--ccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEE--c
Confidence            467899999998 2  12222356777777766432    2257999999999999999999888888889999999  9


Q ss_pred             ccchhHHHHHHHHHHHhC-----CCCEEEE-cCCCCcchHHHhhhCC----CCeeeeeeecCC-CCCCCHHHHHHHHHcC
Q 012647          158 LSGTGSLRLAAALIERYF-----PGAKVLI-SSPTWGNHKNIFNDAR----VPWSEYRYYDPK-TVGLDFEGMIADIKAA  226 (459)
Q Consensus       158 ~ggt~a~~l~~~~~~~~~-----~gd~Vlv-~~p~y~~~~~~~~~~G----~~v~~v~~~~~~-~~~~d~e~l~~~i~~~  226 (459)
                      +|+++++.++..++  +.     +||.|++ ++|+|+.|...+...|    ..+..+++.+++ .+++|++.++  +.  
T Consensus       104 ~Ga~~al~~~~~~l--~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~--  177 (416)
T PRK09440        104 NGSQSAFFYLFNLF--AGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--ID--  177 (416)
T ss_pred             cChHHHHHHHHHHH--hccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cC--
Confidence            99999999984433  43     5899999 7999999988655333    222333442221 4689999987  33  


Q ss_pred             CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc
Q 012647          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (459)
Q Consensus       227 ~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  306 (459)
                       +++++++++|||||||.+++.+++++|+++|++||++||+||+|..+... .  .......  ...+++++++||||. 
T Consensus       178 -~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~-~--~~~~~~~--~~~~~vI~~~SfSK~-  250 (416)
T PRK09440        178 -EDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPG-I--IFSEATP--LWNPNIILCMSLSKL-  250 (416)
T ss_pred             -CCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCC-c--chhhcCc--cccCCeEEEeccccc-
Confidence             36788889999999999999999999999999999999999999764321 0  0001100  114689999999996 


Q ss_pred             ccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHH-HHHHHHHHHHHHHH
Q 012647          307 GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEM-MAGRIKNVRQKLFD  385 (459)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~  385 (459)
                      ++||+|+||+++   ++++++.+...    ......+++.++|.++..+|+++++.    +++.+ .++.|+++++.+.+
T Consensus       251 ~~pGlRiG~~i~---~~~l~~~~~~~----~~~~~~~~s~~~q~~~~~~l~~~~~~----~~~~~~~~~~~~~r~~~~~~  319 (416)
T PRK09440        251 GLPGVRCGIVIA---DEEIIEALSNM----NGIISLAPGRLGPAIAAEMIESGDLL----RLSETVIRPFYRQKVQLAIA  319 (416)
T ss_pred             CCCcceEEEEeC---CHHHHHHHHHH----HHHhccCCCcHHHHHHHHHhccchHH----HHHHHHHHHHHHHHHHHHHH
Confidence            899999999966   88855554433    22333467889999999999987654    33333 67888888888888


Q ss_pred             HHhhcc-CCCCCcccccCCcceeeecCC-----CH-HHHHHHHhcccEEEcCC---------------C--cEEEccCCh
Q 012647          386 SLSAKD-KSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD---------------G--RISLAGLSL  441 (459)
Q Consensus       386 ~L~~~~-g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g---------------g--Ris~~~~~~  441 (459)
                      .|. +. +. .++.+..|+||+|+|+.+     +. ++++.+ +++||.+.||               +  ||||+. ++
T Consensus       320 ~L~-~~l~~-~~~~~~~p~gg~fiw~~~~~~~~~~~~~~~~l-~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~-~~  395 (416)
T PRK09440        320 LLR-RYLPD-EPCLIHKPEGAIFLWLWFKDLPITTEELYQRL-KARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQ-DD  395 (416)
T ss_pred             HHH-Hhccc-CCeEEecCCCceEEEEECCCCCCCHHHHHHHH-HHCCEEEechHhhCCCCccccCCcCceEEEEecC-CH
Confidence            887 53 10 114556889999999854     33 344554 5579999874               2  999987 89


Q ss_pred             hhHHHHHHHHHHHHhh
Q 012647          442 AKCEYLADAIIDSYHN  457 (459)
Q Consensus       442 e~i~~~~~~l~~~~~~  457 (459)
                      +++++++++|++++++
T Consensus       396 ~~l~~~i~~l~~~~~~  411 (416)
T PRK09440        396 EEIEKGIAILAEEVEK  411 (416)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999876

>PLN02672 methionine S-methyltransferase

Probab=100.00  E-value=1.4e-41  Score=361.06  Aligned_cols=343  Identities=11%  Similarity=0.086  Sum_probs=263.2

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCcccc-CceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~gg  160 (459)
                      ++++|+|+.|+|    ..++ |+.+++++.+.+...   .+  ..|.+++|+++++++...+|+..++ ++|++  ++|+
T Consensus       696 g~~vI~LsinE~----d~pp-Pp~V~eAi~eal~~~---~~--s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIv--t~Gs  763 (1082)
T PLN02672        696 ESSLIHMDVDES----FLPV-PSAVKASIFESFVRQ---NI--SESETDPRPSILQFIKSNYGFPTDSCTEFVY--GDTS  763 (1082)
T ss_pred             CCCEEEEeCCCC----CCCC-CHHHHHHHHHHHhhc---CC--CCCChHHHHHHHHHHHHHhCcCCCCCCEEEE--eCCH
Confidence            468999999998    4554 889999998876432   22  3456789999999998888888765 58888  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCC-
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH-  239 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~-  239 (459)
                      ++++.++  +...+.|||+|++++|+|+.|...++..|++++.+|+++++++.+|++.+++++++.  .+..++++||| 
T Consensus       764 ~elL~ll--l~aLl~pGD~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~--~~~~I~L~nPnh  839 (1082)
T PLN02672        764 LALFNKL--VLCCVQEGGTLCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETV--KKPWVYISGPTI  839 (1082)
T ss_pred             HHHHHHH--HHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccC--CCCEEEEECcCC
Confidence            9999887  444467999999999999999999999999999999965568999999999998641  23456678896 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH---hc---CCeEEEEEcCCcCcccCCCCc
Q 012647          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA---TR---GMELLVAQSYSKNLGLYAERI  313 (459)
Q Consensus       240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~---~~---~~~~i~~~S~SK~~~~~G~Ri  313 (459)
                      ||||.+++.+++++|+++|++||++||+||+|.++.+++.....+++...+   +.   ..++++++||||.|+++|||+
T Consensus       840 NPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRI  919 (1082)
T PLN02672        840 NPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEF  919 (1082)
T ss_pred             CCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHh
Confidence            999999999999999999999999999999999988753211111121111   11   237999999999999999999


Q ss_pred             ceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHH---HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012647          314 GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIV---ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK  390 (459)
Q Consensus       314 G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  390 (459)
                      ||+++  +++++++.+...    ..  ...+....|.++   ..++.+.  ...|.+++++.++.++++++++.+.|+ +
T Consensus       920 GylIa--p~~eLi~~l~~~----~~--~s~~~~~~q~Aaaaalall~~~--~~~~~~~l~e~r~~Lk~rRd~L~e~L~-~  988 (1082)
T PLN02672        920 GFLAL--NDSVLIDAFHSA----PG--LSRPHSTLKYTIKKLLGLKNQK--SSDLLDGVAEQKKILKSRAERLKETLE-A  988 (1082)
T ss_pred             eeEEe--CCHHHHHHHHHh----hh--hcCCCcHHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            99954  445555555432    11  112222233333   3223211  123567788999999999999999999 8


Q ss_pred             cCCCCCcccccCCcceeeecCC---------------------C-HHHHHHHHhcccEEEcCCC--------cEEEccCC
Q 012647          391 DKSGKDWSFILRQIGMFSFTGL---------------------N-KAQSDNMTNKWHVYMTKDG--------RISLAGLS  440 (459)
Q Consensus       391 ~g~~~~~~~~~~~~g~f~~~~l---------------------~-~~~~~~ll~~~gI~v~~gg--------Ris~~~~~  440 (459)
                      +|    +++.+|+||||+|+.+                     + .++.+.|+++.||.+.||.        ||+|+. +
T Consensus       989 ~G----i~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIsfa~-~ 1063 (1082)
T PLN02672        989 CG----WDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFSFAL-E 1063 (1082)
T ss_pred             CC----CeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEEecC-C
Confidence            86    6888999999999732                     2 3467788888899999972        999997 8


Q ss_pred             hhhHHHHHHHHHHHHh
Q 012647          441 LAKCEYLADAIIDSYH  456 (459)
Q Consensus       441 ~e~i~~~~~~l~~~~~  456 (459)
                      ++++++++++|++.++
T Consensus      1064 ~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672       1064 DSEFDRALKAIARFKE 1079 (1082)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8899999999998765

>PRK09105 putative aminotransferase; Provisional

Probab=100.00  E-value=2.2e-41  Score=333.91  Aligned_cols=317  Identities=18%  Similarity=0.195  Sum_probs=249.4

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      ++.++|+.|++    ..++ ++.+.+++.+.+..  ...|++. +.++||++|++++.      +++++|++  |+|+++
T Consensus        43 ~~~i~l~~~~~----~~~~-~~~~~~a~~~~~~~--~~~Y~~~-~~~~Lr~aia~~~~------v~~e~I~i--t~Gs~~  106 (370)
T PRK09105         43 EGAVFLNANEC----PLGP-SPAARDAAARSAAL--SGRYDLE-LEDDLRTLFAAQEG------LPADHVMA--YAGSSE  106 (370)
T ss_pred             CCcEEecCCCC----CCCC-CHHHHHHHHHHHHH--hcCCCCc-hHHHHHHHHHHHhC------cChhhEEE--cCChHH
Confidence            57899999987    4443 78899998887643  2457554 48999999999863      34899999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT  242 (459)
                      ++.++.  ...+.+||+|++++|+|..|...++..|++++.+|++  .++.+|++.+++. .+   +++++++|||||||
T Consensus       107 ai~~~~--~~l~~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~-~~---~~~~v~l~nP~NPT  178 (370)
T PRK09105        107 PLNYAV--LAFTSPTAGLVTADPTYEAGWRAADAQGAPVAKVPLR--ADGAHDVKAMLAA-DP---NAGLIYICNPNNPT  178 (370)
T ss_pred             HHHHHH--HHHcCCCCEEEEeCCChHHHHHHHHHcCCeEEEecCC--CCCCCCHHHHHhc-CC---CCCEEEEeCCCCCC
Confidence            999983  3346799999999999999999999999999999984  3578999999876 22   57788889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCC
Q 012647          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (459)
Q Consensus       243 G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (459)
                      |.+++.+++++|++.|+ +++++|+||+|.+|...   .   +...+.+..+++++++||||.||++|+|+||+++   +
T Consensus       179 G~~~~~~~l~~l~~~~~-~~~~lIvDEaY~~f~~~---~---s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~---~  248 (370)
T PRK09105        179 GTVTPRADIEWLLANKP-AGSVLLVDEAYIHFSDA---P---SVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAA---R  248 (370)
T ss_pred             CcCcCHHHHHHHHHhCC-CCcEEEEECchHHhccC---c---chHHHHhhCCCEEEEecccHhhcCCccceeeeec---C
Confidence            99999999999999764 69999999999887532   1   2223344567899999999999999999999966   7


Q ss_pred             hhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC
Q 012647          323 SDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR  402 (459)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~  402 (459)
                      ++.++.+    ...  . +.+++..+|.++...|.++++       +++.+++++++++.+.+.|+ ++|    +++.++
T Consensus       249 ~~~i~~l----~~~--~-~~~~~~~~~~aa~~~L~~~~~-------~~~~~~~~~~~r~~l~~~L~-~~g----~~~~~~  309 (370)
T PRK09105        249 PDLLAKL----ARF--G-HNPLPVPAAAAGLASLRDPKL-------VPQRRAENAAVREDTIAWLK-KKG----YKCTPS  309 (370)
T ss_pred             HHHHHHH----Hhc--C-CCCcCHHHHHHHHHHHhCHHH-------HHHHHHHHHHHHHHHHHHHH-HCC----CCcCCC
Confidence            7754443    332  1 235777888888888876432       56778889999999999999 876    577788


Q ss_pred             CcceeeecCC--C-HHHHHHHHhcccEEEcCC-----C--cEEEccCChhhHHHHHHHHHHHHh
Q 012647          403 QIGMFSFTGL--N-KAQSDNMTNKWHVYMTKD-----G--RISLAGLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       403 ~~g~f~~~~l--~-~~~~~~ll~~~gI~v~~g-----g--Ris~~~~~~e~i~~~~~~l~~~~~  456 (459)
                      +++||+ +.+  + .++.+.|+++ ||.+..+     +  ||+++  +++++++++++|+++++
T Consensus       310 ~~~f~~-~~~~~~~~~l~~~L~~~-gI~v~~~~~~~~~~~Ris~~--~~~~~~~l~~al~~~~~  369 (370)
T PRK09105        310 QANCFM-VDVKRPAKAVADAMAKQ-GVFIGRSWPIWPNWVRVTVG--SEEEMAAFRSAFAKVMR  369 (370)
T ss_pred             CCcEEE-EeCCCCHHHHHHHHHHC-CcEEecCCCCCCCeEEEEcC--CHHHHHHHHHHHHHHhh
Confidence            888775 443  3 3566777765 9998421     2  99998  57889999999988763

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=100.00  E-value=3.1e-41  Score=326.59  Aligned_cols=321  Identities=18%  Similarity=0.225  Sum_probs=260.7

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      +++++|+.+++    ..++ ++.+.+++.+.++.  .+.| |.....++++++++++..     +++++|++  ++|+++
T Consensus        22 ~~~i~LssNen----P~gp-~~~~~~~~~~~~~~--~~rY-Pd~~~~~l~~a~a~~~~~-----~~~~~V~~--gnGsde   86 (356)
T COG0079          22 PGIIKLSSNEN----PYGP-PPKVIEAIRAALDK--LNRY-PDPDYRELRAALAEYYGV-----VDPENVLV--GNGSDE   86 (356)
T ss_pred             ccceeecCCCC----CCCC-CHHHHHHHHHHHHh--hccC-CCCcHHHHHHHHHHHhCC-----CCcceEEE--cCChHH
Confidence            36899998875    3443 68888888887763  3678 555889999999999753     33789999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT  242 (459)
                      .+.++.  ...+.+||+|+++.|+|..|...++.+|++++.+|..  + |.+|++.+.+.+.+   +++++++|||||||
T Consensus        87 ~i~~l~--~~~~~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~--~-~~~d~~~~~~~~~~---~~~lv~i~nPNNPT  158 (356)
T COG0079          87 LIELLV--RAFVEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLK--E-FRLDLDAILAAIRD---KTKLVFLCNPNNPT  158 (356)
T ss_pred             HHHHHH--HHhhcCCCEEEEcCCChHHHHHHHHhcCCeEEEeccc--c-cccCHHHHHHhhhc---CCCEEEEeCCCCCC
Confidence            999983  4346799999999999999999999999999999994  3 89999999999986   67899999999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCC
Q 012647          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (459)
Q Consensus       243 G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (459)
                      |..++.++++++++.+.+ +.++|+||||.+|...       +...++...+++++++||||.||++|+|+||+++   +
T Consensus       159 G~~~~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~~-------~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia---~  227 (356)
T COG0079         159 GTLLPREELRALLEALPE-GGLVVIDEAYIEFSPE-------SSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIA---N  227 (356)
T ss_pred             CCCCCHHHHHHHHHhCCC-CcEEEEeCchhhcCCc-------hhhhhccCCCCEEEEEecHHhhhcchhceeeccC---C
Confidence            999999999999999988 9999999999999852       2222333567899999999999999999999866   8


Q ss_pred             hhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC
Q 012647          323 SDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR  402 (459)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~  402 (459)
                      ++    +++.+.+... .| +.+.+++.++..+|.+.+       ++++.++++.+.|+++.+.|+ .+|+   ..+.++
T Consensus       228 ~~----~i~~l~~vr~-p~-~v~~~a~~aa~aal~~~~-------~~~~~~~~~~~~r~rl~~~l~-~~~~---~~v~pS  290 (356)
T COG0079         228 PE----LIAALNKVRP-PF-NVSSPALAAAIAALRDAD-------YLEESVERIREERERLYAALK-ALGL---FGVFPS  290 (356)
T ss_pred             HH----HHHHHHHhcC-CC-CCCHHHHHHHHHHcccHH-------HHHHHHHHHHHHHHHHHHHHH-hCCC---CeecCC
Confidence            88    4555554432 24 788899999999888763       368899999999999999999 8862   125555


Q ss_pred             CcceeeecCCC---H-HHHHHHHhcccEEEcCCC---------cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          403 QIGMFSFTGLN---K-AQSDNMTNKWHVYMTKDG---------RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       403 ~~g~f~~~~l~---~-~~~~~ll~~~gI~v~~gg---------Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      + +.|+++...   . ++.+.|++ +||.++..+         ||+++  ++|+.+.++++|+++++..
T Consensus       291 ~-aNFvlv~~~~~~~~~l~~~L~~-~giivR~~~~~~~~~~~lRitvg--t~een~~ll~AL~~~~~~~  355 (356)
T COG0079         291 Q-ANFVLVRVPDAEAAALAEALLK-KGILVRDCSSVGLLPGYLRITVG--TPEENDRLLAALREVLKGL  355 (356)
T ss_pred             C-CcEEEEECCCccHHHHHHHHHH-CCEEEEeCCCCCCCCCeEEEEeC--CHHHHHHHHHHHHHHHhcc
Confidence            5 678887663   2 34566666 599998762         99998  6677799999999988653

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=5.6e-41  Score=330.16  Aligned_cols=335  Identities=14%  Similarity=0.136  Sum_probs=252.9

Q ss_pred             ccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccc
Q 012647           69 PILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLK  148 (459)
Q Consensus        69 ~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~  148 (459)
                      ++.+....+.. ...++++|+.|++    ..++ |+.+++++.+.+..  ...|+ ..+.+++|+++|+++.      ++
T Consensus         7 ~~~~~~~~~~~-~~~~~i~l~~~~~----~~~~-p~~~~~a~~~~~~~--~~~y~-~~~~~~lr~~ia~~~~------~~   71 (356)
T PRK08056          7 NIREAATVLGI-SPDQLLDFSANIN----PLGM-PVSLKRAIIDNLDC--AERYP-DVEYRHLHQALARHHQ------VP   71 (356)
T ss_pred             cHHHHHHHhCC-ChhhEEEeccccC----CCCC-CHHHHHHHHHHHHh--cccCc-CccHHHHHHHHHHHhC------cC
Confidence            34444444432 2357899999987    4443 78899998877653  24674 4578999999999973      34


Q ss_pred             cCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCC
Q 012647          149 EQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG  228 (459)
Q Consensus       149 ~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~  228 (459)
                      +++|++  |+|+++++.++..   .+.+|+ +++++|+|..|...++..|++++.+|+++++++.+| +++++.+.+   
T Consensus        72 ~~~i~i--t~Ga~~~l~~~~~---~l~~g~-viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~~---  141 (356)
T PRK08056         72 ASWILA--GNGETESIFAVVS---GLKPRR-AMIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLT-DAILEALTP---  141 (356)
T ss_pred             hhhEEE--CCCHHHHHHHHHH---HhCCCC-EEEeCCCcHHHHHHHHHcCCeEEEEecccccCCCcc-HHHHHhccC---
Confidence            899999  9999999998743   346776 788899999999999999999999998655556666 455555653   


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc
Q 012647          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (459)
Q Consensus       229 ~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  308 (459)
                      +++++++++||||||.+++.+++++|+++|++++++||+||+|.++.+++  ..  .+ ..+...+++++++||||.||+
T Consensus       142 ~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~--~~--~~-~~~~~~~~~i~~~S~SK~~~~  216 (356)
T PRK08056        142 DLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDE--TG--FI-PQLADNPHLWVLRSLTKFYAI  216 (356)
T ss_pred             CCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcc--hH--HH-HHhccCCCEEEEEechhhccC
Confidence            67788889999999999999999999999999999999999999987542  11  11 123345689999999999999


Q ss_pred             CCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012647          309 YAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  388 (459)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  388 (459)
                      +|+|+||++  +++++.++.+    .... . ..+++.++|.++..++++..+       +++.++.++++++.+.+.|+
T Consensus       217 ~G~RiG~~v--~~~~~~~~~l----~~~~-~-~~~~~~~~~~~a~~~l~~~~~-------~~~~~~~~~~~r~~l~~~L~  281 (356)
T PRK08056        217 PGLRLGYLV--NSDDAAVARM----RRQQ-M-PWSINAFAALAGEVILQDRAY-------QQATWQWLAEEGARFYQALC  281 (356)
T ss_pred             cchhheeee--cCCHHHHHHH----HHhC-C-CCchhHHHHHHHHHHhCCHHH-------HHHHHHHHHHHHHHHHHHHh
Confidence            999999994  4455643333    3222 2 235677788888888876533       46778899999999999998


Q ss_pred             hccCCCCCcccccCCcceeeecCCC---HHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHHH
Q 012647          389 AKDKSGKDWSFILRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       389 ~~~g~~~~~~~~~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~~  455 (459)
                       +++   ++.+.++ +|+|+|+.+.   .++++.|++ +||.+.+|.          ||+++  +.++.+.++++|++++
T Consensus       282 -~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~-~gI~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~~l~~~~  353 (356)
T PRK08056        282 -ALP---LLTVWPG-RANYLFLRCERPDIDLQRALLT-QRILIRSCANYPGLDSRYYRVAIR--SAAENERLLAALRNVL  353 (356)
T ss_pred             -cCC---CcEEcCC-CCcEEEEEcCCChHHHHHHHHH-CCeEEEECCCCCCCCCCEEEEEEc--CHHHHHHHHHHHHHHH
Confidence             873   1555555 5788888652   455667765 699998762          99987  5688999999999876


Q ss_pred             h
Q 012647          456 H  456 (459)
Q Consensus       456 ~  456 (459)
                      +
T Consensus       354 ~  354 (356)
T PRK08056        354 T  354 (356)
T ss_pred             c
Confidence            5

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=3.9e-41  Score=332.10  Aligned_cols=319  Identities=15%  Similarity=0.164  Sum_probs=253.2

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      +++++|+.|+|    ...+ ++.+.+++.+.+..   ..|.|..|.+++|+++|+++.      +++++|++  |+|+++
T Consensus        29 ~~~i~l~~n~~----~~~~-~~~v~~a~~~~~~~---~~~~p~~g~~~lr~~ia~~~~------~~~~~i~~--t~G~~~   92 (359)
T PRK03158         29 EKIVKLASNEN----PYGP-SPKVKEAIAAHLDE---LALYPDGYAPELRTKVAKHLG------VDEEQLLF--GAGLDE   92 (359)
T ss_pred             CceEEecCCCC----CCCC-CHHHHHHHHHHHHH---hhcCCCCcHHHHHHHHHHHhC------CCHHHEEE--CCCHHH
Confidence            47899999987    3333 77899998887653   456688899999999999973      23789999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT  242 (459)
                      ++.++..  ..+.+||+|++++|+|+.|...+...|++++.+|++   ++++|++.+++.+++   +++++++++|||||
T Consensus        93 ~l~~~~~--~~~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~---~~~~d~~~l~~~~~~---~~~~v~i~~p~NPt  164 (359)
T PRK03158         93 VIQMISR--ALLNPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK---DGGHDLEAMLKAIDE---QTKIVWICNPNNPT  164 (359)
T ss_pred             HHHHHHH--HHhCCCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC---CCCcCHHHHHHhcCC---CCCEEEEeCCCCCC
Confidence            9998733  336799999999999999999999999999999984   467999999988865   67788889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCC
Q 012647          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (459)
Q Consensus       243 G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (459)
                      |.+++.+++++|++.|+ +|++||+||+|.++.+++...  ..+ ...+..+++++++||||.||++|+|+||+++   +
T Consensus       165 G~~~~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~--~~~-~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~---~  237 (359)
T PRK03158        165 GTYVNHEELLSFLESVP-SHVLVVLDEAYYEYVTAEDYP--DTL-PLLEKYENLIVLRTFSKAYGLAALRVGYGIA---S  237 (359)
T ss_pred             CCCCCHHHHHHHHHhCC-CCcEEEEECchHhhcCCcccc--cHH-HHHHhcCCEEEEEechHhhcCcchhhehhcC---C
Confidence            99999999999998875 699999999999988653111  122 2334557899999999999999999999966   7


Q ss_pred             hhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC
Q 012647          323 SDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR  402 (459)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~  402 (459)
                      ++.++.+    ..... .+ +++.++|.++..+|++.++       +++.++.++++++.+.+.|+ +.|    +.+.++
T Consensus       238 ~~~~~~~----~~~~~-~~-~~~~~~q~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~l~-~~~----~~~~~~  299 (359)
T PRK03158        238 EELIEKL----NIARP-PF-NTTRIAQYAAIAALEDQAF-------LKECVEKNAEGLEQYYAFCK-EYG----LFYYPS  299 (359)
T ss_pred             HHHHHHH----HHhcC-CC-CCCHHHHHHHHHHhcCHHH-------HHHHHHHHHHHHHHHHHHHH-HCC----CeeCCC
Confidence            7755444    33322 23 6788999999999986543       45667778888999999998 776    455544


Q ss_pred             CcceeeecCC--C-HHHHHHHHhcccEEEcCCC--------cEEEccCChhhHHHHHHHHHHH
Q 012647          403 QIGMFSFTGL--N-KAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDS  454 (459)
Q Consensus       403 ~~g~f~~~~l--~-~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e~i~~~~~~l~~~  454 (459)
                       +|+|+|+.+  + .++++.|++ +||.+.||.        ||+++  +.++++.++++|+++
T Consensus       300 -~g~~i~~~~~~~~~~~~~~l~~-~gv~v~~g~~f~~~~~iRi~~~--~~~~~~~l~~al~~~  358 (359)
T PRK03158        300 -QTNFIFVDTGRDANELFEALLK-KGYIVRSGAALGFPTGVRITIG--LKEQNDKIIELLKEL  358 (359)
T ss_pred             -cCcEEEEECCCCHHHHHHHHHH-CCeEEeeCCCCCCCCeEEEecC--CHHHHHHHHHHHHHh
Confidence             578999865  2 355667765 699999972        99988  678999999999875

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=5.3e-41  Score=332.55  Aligned_cols=316  Identities=19%  Similarity=0.199  Sum_probs=246.0

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      .+++|+|+.|++    ..++ +|.+.+++....   ....| |..+.++||+++++++.      +++++|++  |+|++
T Consensus        51 ~~~~i~l~~n~~----p~~~-~~~v~~a~~~~~---~~~~Y-p~~~~~~lr~~ia~~~~------~~~~~I~~--t~Ga~  113 (380)
T PLN03026         51 PEDIVKLDANEN----PYGP-PPEVLEALGNMK---FPYVY-PDPESRRLRAALAEDSG------LESENILV--GCGAD  113 (380)
T ss_pred             ccceEEccCCCC----CCCC-CHHHHHHHHhhH---hhccC-CCCCHHHHHHHHHHHhC------cChhhEEE--cCCHH
Confidence            458999999986    3333 677888876532   12456 55678999999999974      34789999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      +++.++.  ...+.+||+|++++|+|..|...++..|++++.+|.+  +++.+|++.+++++..  ++++++++++||||
T Consensus       114 ~~i~~~~--~~~~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~~--~~~~~v~l~~P~NP  187 (380)
T PLN03026        114 ELIDLLM--RCVLDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRT--PDFSLDVPRIVEAVET--HKPKLLFLTSPNNP  187 (380)
T ss_pred             HHHHHHH--HHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecC--CCCCcCHHHHHHHHhc--cCCcEEEEeCCCCC
Confidence            9999983  3346799999999999999999999999999999983  4678999999999843  26788888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+++.+++++|++.+    ++||+||+|.+|.+.+   .  .+ ......+++++++||||.||++|+|+||+++   
T Consensus       188 TG~~~~~~~l~~l~~~~----~~vi~DeaY~~~~~~~---~--~~-~~~~~~~~viv~~SfSK~~glaGlRiGy~~~---  254 (380)
T PLN03026        188 DGSIISDDDLLKILELP----ILVVLDEAYIEFSTQE---S--RM-KWVKKYDNLIVLRTFSKRAGLAGLRVGYGAF---  254 (380)
T ss_pred             CCCCCCHHHHHHHHhcC----CEEEEECcchhhcCCc---c--hH-HHHHhCCCEEEEecchHhhcCccccceeeec---
Confidence            99999999999988753    8999999999987532   1  11 2334567899999999999999999999966   


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  401 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  401 (459)
                      +++.++.    +...... + +.+.++|.++..+|++.++       +++.++.++++++++.+.|+ +++.   +. ..
T Consensus       255 ~~~~i~~----l~~~~~~-~-~~~~~~q~aa~~aL~~~~~-------~~~~~~~~~~~r~~l~~~L~-~~~~---~~-~~  316 (380)
T PLN03026        255 PLSIIEY----LWRAKQP-Y-NVSVAAEVAACAALSNPKY-------LEDVKNALVEERERLFGLLK-EVPF---LE-PY  316 (380)
T ss_pred             CHHHHHH----HHHhcCC-C-CCCHHHHHHHHHHhhCHHH-------HHHHHHHHHHHHHHHHHHHH-HCCC---Ce-EC
Confidence            7774444    4333322 3 5778889998888876533       56788899999999999999 8752   23 35


Q ss_pred             CCcceeeecCCC-----HHHHHHHHhcccEEEcCCC--------cEEEccCChhhHHHHHHHHHHH
Q 012647          402 RQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDS  454 (459)
Q Consensus       402 ~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e~i~~~~~~l~~~  454 (459)
                      +.+++|+|+.+.     .++.+.|+ ++||.++++.        |||++  +.+++++++++|+++
T Consensus       317 p~~~~f~~~~~~~~~~~~~~~~~l~-~~gI~v~~~~~~~~~~~lRis~~--~~~~~~~l~~al~~~  379 (380)
T PLN03026        317 PSDANFILCRVTSGRDAKKLKEDLA-KMGVMVRHYNSKELKGYIRVSVG--KPEHTDALMEALKQL  379 (380)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHH-HCCeEEEECCCCCCCCEEEEecC--CHHHHHHHHHHHHHh
Confidence            677888887552     34566666 4699998752        99998  567889999988754

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=5e-41  Score=330.86  Aligned_cols=320  Identities=19%  Similarity=0.164  Sum_probs=249.7

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      .++|+|+.|++    .+++ ++.+++++.+.+.......|++ .|.++||+++|+++....     .++|++  |+|+++
T Consensus        26 ~~~i~l~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~Y~~-~~~~~lr~~ia~~~~~~~-----~~~I~~--t~G~~~   92 (356)
T PRK04870         26 TGMVKLDAMEN----PYRL-PAELRAELGERLAEVALNRYPD-PRAAALKAALRAAMGVPA-----GADVLL--GNGSDE   92 (356)
T ss_pred             CCceeCcCCCC----CCCC-CHHHHHHHHHHhhccccccCCC-CCHHHHHHHHHHHhCcCC-----CCcEEE--cCCHHH
Confidence            47999999987    4544 8999999998875433467865 688999999999974321     257988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT  242 (459)
                      ++.++..  ..+.+||+|++++|+|..|...++..|++++.+|++  +++++|++.+++++..  .+++++++++|||||
T Consensus        93 ~i~~~~~--~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~--~~~~~d~~~l~~~~~~--~~~~~v~l~~p~NPt  166 (356)
T PRK04870         93 LIQLLAL--ACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLT--ADFTLDLPAMLAAIAE--HRPALVFLAYPNNPT  166 (356)
T ss_pred             HHHHHHH--HhcCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCC--CCCCCCHHHHHHHhhc--CCCCEEEEcCCCCCC
Confidence            9999843  336799999999999999999999999999999984  4588999999999874  266788889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCC
Q 012647          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (459)
Q Consensus       243 G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (459)
                      |.+++.+++++|+++|   ++++|+||+|.++.+..    .  . ......+++++++|||| ++++|+|+||+++   +
T Consensus       167 G~~~~~~~~~~i~~~~---~~~ii~De~y~~~~~~~----~--~-~~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~---~  232 (356)
T PRK04870        167 GNLFDDADVERIIEAA---PGLVVVDEAYQPFAGDS----W--L-PRLARFPNLLVMRTVSK-LGLAGLRLGYLAG---H  232 (356)
T ss_pred             CCCCCHHHHHHHHHHC---CCEEEEECCchhhcCcc----h--H-HHHhhCCCEEEEecchh-hhhHHHhhhhhhC---C
Confidence            9999999999999998   77899999999886431    1  1 12344568999999999 8999999999966   7


Q ss_pred             hhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC
Q 012647          323 SDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR  402 (459)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~  402 (459)
                      ++.++.    +.... ..+ +.+.++|.++..++++.+       .+++.+++++++++.+.+.|+ +++   ++.+. +
T Consensus       233 ~~~i~~----~~~~~-~~~-~~~~~~q~~a~~~l~~~~-------~~~~~~~~~~~~~~~l~~~L~-~~~---~~~~~-~  294 (356)
T PRK04870        233 PAWIAE----LDKVR-PPY-NVNVLTQATALFALEHVD-------VLDAQAAQLRAERTRLAAALA-ALP---GVTVF-P  294 (356)
T ss_pred             HHHHHH----HHHcc-CCC-cCCHHHHHHHHHHHhCHH-------HHHHHHHHHHHHHHHHHHHHH-hCC---CcEEC-C
Confidence            774444    33332 223 567788888877776532       256778888999999999998 762   15544 5


Q ss_pred             CcceeeecCCC-HHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHHH
Q 012647          403 QIGMFSFTGLN-KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       403 ~~g~f~~~~l~-~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~~  455 (459)
                      .+|+|+|+.++ .+.+..+++++||.+.++.          |||++  +.++++.++++|++++
T Consensus       295 ~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~  356 (356)
T PRK04870        295 SAANFILVRVPDAAAVFDGLKTRGVLVKNLSGMHPLLANCLRVTVG--TPEENAQFLAALKAAL  356 (356)
T ss_pred             CCCeEEEEECCCHHHHHHHHHHCCEEEEECCCCCCCCCCeEEEeCC--CHHHHHHHHHHHHHhC
Confidence            56778888773 4444455566799998762          99998  5788999999998763

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=6e-41  Score=331.77  Aligned_cols=324  Identities=18%  Similarity=0.209  Sum_probs=251.8

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      .+++|+|+.|+|    ...+ ++.+.+++.+....  ..+|++..| .+||+++++++.      +++++|++  |+|++
T Consensus        35 ~~~~i~l~~~~~----~~~~-~~~~~~al~~~~~~--~~~Y~~~~g-~~lr~~ia~~~~------~~~~~i~~--t~G~~   98 (371)
T PRK05166         35 VPRIAKLGSNEN----PLGP-SPAVRRAFADIAEL--LRLYPDPQG-RALREAIAARTG------VPADRIIL--GNGSE   98 (371)
T ss_pred             CcceEEcCCCCC----CCCC-CHHHHHHHHHHHHH--hhcCCCCcH-HHHHHHHHHHhC------cCHHHEEE--cCCHH
Confidence            457999999987    2322 67888888775533  367988888 499999999963      23789999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      +++.++..  ..+.+||+|+++.|+|..+...++..|++++.+|++  .++++|++++++.+++   ++++++++|||||
T Consensus        99 ~~l~~~~~--~~~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~~~~---~~~~v~l~~p~NP  171 (371)
T PRK05166         99 DLIAVICR--AVLRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVT--PDLGFDLDALCAAVAR---APRMLMFSNPSNP  171 (371)
T ss_pred             HHHHHHHH--HhcCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecC--CCCCCCHHHHHHhhhc---CCCEEEEeCCCCC
Confidence            99998743  336799999999999999999999999999999984  3578999999998876   5677888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH-hcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      ||.+++.+++++|+++|++ +++||+||+|.++.+++   ...+..... ...+++++++||||.||++|+|+||+  ++
T Consensus       172 tG~~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~---~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~--i~  245 (371)
T PRK05166        172 VGSWLTADQLARVLDATPP-ETLIVVDEAYAEYAAGD---DYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYG--LV  245 (371)
T ss_pred             CCCCCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCc---CcccHHHHHhhcCCCEEEEeechHhhhcchhheeee--ec
Confidence            9999999999999999874 88999999999998542   112222222 23457999999999999999999998  34


Q ss_pred             CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012647          321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  400 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  400 (459)
                      ++++..+.+    .... . ..+++.++|.++...|.+.++       +++.++.++++++.+.+.|+ +.|    +.+ 
T Consensus       246 ~~~~l~~~~----~~~~-~-~~~~~~~~q~~~~~~l~~~~~-------~~~~~~~~~~~r~~l~~~L~-~~g----~~~-  306 (371)
T PRK05166        246 SDPELVGLL----DRVR-T-PFNVNGAAQAAALAALDDEEH-------LAKGVALALAERERLKKELA-EMG----YRI-  306 (371)
T ss_pred             CCHHHHHHH----HHhc-c-CCCCCHHHHHHHHHHhcCHHH-------HHHHHHHHHHHHHHHHHHHH-HCc----Cee-
Confidence            567744443    3322 2 236788888888777776432       56777888999999999999 876    454 


Q ss_pred             cCCcceeeecCC--C-HHHHHHHHhcccEEEcCCC--------cEEEccCChhhHHHHHHHHHHHHh
Q 012647          401 LRQIGMFSFTGL--N-KAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       401 ~~~~g~f~~~~l--~-~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e~i~~~~~~l~~~~~  456 (459)
                      .+.+|+|+|+.+  + .++.+.|++ +||.+.||.        ||+++  +.++.++++++|+.++.
T Consensus       307 ~p~~g~fl~~~~~~~~~~l~~~l~~-~gi~v~p~~~~~~~~~iRi~~~--~~~~~~~l~~~l~~i~~  370 (371)
T PRK05166        307 APSRANFLFFDARRPASAVAEALLR-QGVIVKPWKQPGFETFIRVSIG--SPEENDHFVAALDKVLE  370 (371)
T ss_pred             CCCcCCEEEEeCCCCHHHHHHHHHH-CCeEEecCCCCCCCCeEEEEcC--CHHHHHHHHHHHHHHhh
Confidence            455688999875  2 455667776 599999872        99998  45678888888877653

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=6.7e-41  Score=329.82  Aligned_cols=316  Identities=17%  Similarity=0.187  Sum_probs=245.4

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      .++|+|+.|++    ..++ ++.+.+++.+.+.... ..|+ ..|.++||++||+++.      +++++|++  |+|+++
T Consensus        24 ~~~i~l~~~~~----~~~~-~~~~~~a~~~~~~~~~-~~y~-~~~~~~lr~aia~~~~------~~~~~I~i--t~G~~~   88 (353)
T PRK05387         24 AKLIKLNTNEN----PYPP-SPKVLEAIRAALGDDL-RLYP-DPNADALRQAIAAYYG------LDPEQVFV--GNGSDE   88 (353)
T ss_pred             cceeeccCCCC----CCCC-CHHHHHHHHHHhhhhh-hcCC-CCcHHHHHHHHHHHhC------CCHHHEEE--cCCHHH
Confidence            47899999997    4444 7889999988775433 6784 4577999999999974      34899999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT  242 (459)
                      ++.++.  ...+.+||+|++++|+|+.|...++..|++++.+|++  +++++|++++++       .+++++++||||||
T Consensus        89 al~~~~--~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~-------~~~~v~~~~P~NPt  157 (353)
T PRK05387         89 VLAHAF--LAFFNHDRPLLFPDITYSFYPVYAGLYGIPYEEIPLD--DDFSIDVEDYLR-------PNGGIIFPNPNAPT  157 (353)
T ss_pred             HHHHHH--HHhcCCCCEEEEeCCCHHHHHHHHHHcCCEEEEeecC--CCCCCCHHHHHh-------cCCEEEEeCCCCCC
Confidence            999984  3447899999999999999999999999999999983  467899998863       23467789999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCC
Q 012647          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (459)
Q Consensus       243 G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (459)
                      |.+++.+++++|++.++  ++++|+||+|.++...    ..  . .+.+..+++++++||||.||++|+|+||+++   +
T Consensus       158 G~~~~~~~~~~l~~~~~--~~~livDe~y~~~~~~----~~--~-~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~---~  225 (353)
T PRK05387        158 GIALPLAEIERILAANP--DSVVVIDEAYVDFGGE----SA--I-PLIDRYPNLLVVQTFSKSRSLAGLRVGFAIG---H  225 (353)
T ss_pred             CCCCCHHHHHHHHHhCC--CcEEEEeCcccccCCc----ch--H-HHHhhCCCEEEEEehhHhhcchhhhceeeec---C
Confidence            99999999999988653  9999999999877421    11  1 2334457899999999999999999999965   7


Q ss_pred             hhHHHHHHHHHHhhcccc-ccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012647          323 SDLAARVKSQLKRLARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  401 (459)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  401 (459)
                      ++..+.+..    ..... ..+++.++|.++..+|.+.++       +++.+++++++++.+.+.|+ ++|    +.+. 
T Consensus       226 ~~~~~~l~~----~~~~~~~~~~~~~~q~~~~~~l~~~~~-------~~~~~~~~~~~~~~l~~~L~-~~g----~~~~-  288 (353)
T PRK05387        226 PELIEALNR----VKNSFNSYPLDRLAQAGAIAAIEDEAY-------FEETRAKVIATRERLVEELE-ALG----FEVL-  288 (353)
T ss_pred             HHHHHHHHH----hhccCCCCCcCHHHHHHHHHHhcCHHH-------HHHHHHHHHHHHHHHHHHHH-HCC----CeEC-
Confidence            775544433    22221 225678888888888876533       45678888999999999999 876    4544 


Q ss_pred             CCcceeeecCC---CH-HHHHHHHhcccEEEcCCC--------cEEEccCChhhHHHHHHHHHHHHh
Q 012647          402 RQIGMFSFTGL---NK-AQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       402 ~~~g~f~~~~l---~~-~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e~i~~~~~~l~~~~~  456 (459)
                      +.+++|+|+.+   +. ++.+.|.+ +||.+.+.+        ||+++  +++++++++++|++++.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~~~~~~iRis~~--~~~~~~~~~~~L~~~~~  352 (353)
T PRK05387        289 PSKANFVFARHPSHDAAELAAKLRE-RGIIVRHFNKPRIDQFLRITIG--TDEEMEALVDALKEILA  352 (353)
T ss_pred             CCcCcEEEEECCCCCHHHHHHHHHH-CCEEEEECCCCCCCCeEEEEeC--CHHHHHHHHHHHHHHhh
Confidence            55677888765   33 45666654 699985431        99997  56899999999998865

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=8.5e-41  Score=330.18  Aligned_cols=323  Identities=13%  Similarity=0.119  Sum_probs=252.7

Q ss_pred             CCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        81 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      +....++|+.|++    +.++ ++.+.+++.+....  ...|++. +.++||++||+++.      +++++|++  |+|+
T Consensus        30 g~~~~~~l~~~~~----~~~~-~~~~~~a~~~~~~~--~~~Y~~~-~~~~Lr~~ia~~~~------~~~~~I~i--t~G~   93 (369)
T PRK08153         30 GRPFRARIGANES----GFGP-SPSVIAAMREAAAE--IWKYGDP-ENHDLRHALAAHHG------VAPENIMV--GEGI   93 (369)
T ss_pred             CCcceeEecCCCC----CCCC-CHHHHHHHHHHHHH--hhcCCCC-ccHHHHHHHHHHhC------CCHHHEEE--cCCH
Confidence            3445679999987    5554 78899988877643  2568655 57999999999973      34789999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      ++++.++..  ..+.+||.|++++|+|+.|...++..|++++.+|+++   ..+|++.+++.+..  .+++++++++|||
T Consensus        94 ~~~l~~~~~--~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~---~~~~~~~l~~~~~~--~~~~~i~l~~P~N  166 (369)
T PRK08153         94 DGLLGLIVR--LYVEPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRD---DREDLDALLDAARR--ENAPLVYLANPDN  166 (369)
T ss_pred             HHHHHHHHH--HhcCCCCEEEECCCcchHHHHHHHHcCCeEEEeeCCC---CCCCHHHHHHHhcc--cCCcEEEEeCCCC
Confidence            999999833  3367999999999999999998999999999999842   35899999887754  3667888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      |||.+++.+++++|+++|+ ++++||+||+|.++.+++   ...+   +....+++++++||||.||++|+|+||+++  
T Consensus       167 PtG~~~~~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~---~~~~---~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~--  237 (369)
T PRK08153        167 PMGSWHPAADIVAFIEALP-ETTLLVLDEAYCETAPAG---AAPP---IDTDDPNVIRMRTFSKAYGLAGARVGYAIG--  237 (369)
T ss_pred             CCCCCCCHHHHHHHHHhCC-CCcEEEEeCchhhhcCcc---cchh---hhhcCCCEEEEecchHhccCcchheeeeec--
Confidence            9999999999999999987 499999999999998643   1222   223456899999999999999999999966  


Q ss_pred             CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012647          321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  400 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  400 (459)
                       +++.++.+.    .....  .+++.++|.++..+|+++++       +++.++.++++++.+.+.|+ +.|    +...
T Consensus       238 -~~~~~~~l~----~~~~~--~~~s~~~q~~~~~~l~~~~~-------~~~~~~~~~~~r~~~~~~L~-~~g----~~~~  298 (369)
T PRK08153        238 -APGTIKAFD----KVRNH--FGMNRIAQAAALAALKDQAY-------LAEVVGKIAAARDRIAAIAR-ANG----LTPL  298 (369)
T ss_pred             -CHHHHHHHH----HhhcC--CCCCHHHHHHHHHHhcCHHH-------HHHHHHHHHHHHHHHHHHHH-HCC----CccC
Confidence             777554443    33222  36788899999888876533       56778899999999999999 877    4433


Q ss_pred             cCCcceeeecCCC------HHHHHHHHhcccEEEc-CC-----C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          401 LRQIGMFSFTGLN------KAQSDNMTNKWHVYMT-KD-----G--RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       401 ~~~~g~f~~~~l~------~~~~~~ll~~~gI~v~-~g-----g--Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                       +.+++|+|+.+.      .++.++|++ +||.+. |+     +  ||+++  ++++++.++++|++++...
T Consensus       299 -p~~~~f~~~~~~~~~~~a~~l~~~l~~-~Gi~v~~p~~~~~~~~iRis~~--~~~~~~~~~~al~~~~~~~  366 (369)
T PRK08153        299 -PSATNFVAIDCGRDGAFARAVLDGLIA-RDIFVRMPGVAPLDRCIRVSCG--PDEELDLFAEALPEALEAA  366 (369)
T ss_pred             -CCcCcEEEEECCCCcccHHHHHHHHHH-CCeEEeeCCCCCCCCeEEEecC--CHHHHHHHHHHHHHHHHHh
Confidence             667889997652      233455555 699995 43     2  99988  6899999999999988653

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-40  Score=308.64  Aligned_cols=316  Identities=16%  Similarity=0.196  Sum_probs=266.9

Q ss_pred             CCCCCCcccHHHHHHHHHHHhcCCC--CccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh-h
Q 012647          120 KEYLPIEGLAAFNKVTAELLFGADN--SVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-D  196 (459)
Q Consensus       120 ~~Y~~~~g~~~lr~aia~~l~~~~~--~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~  196 (459)
                      ..|.+-.|.+.+|+++|+++....+  +.++|+++++  +.|+|++++.+.-+  +.+|||..+||.|.|+++..-++ .
T Consensus       115 a~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv--~~G~T~ane~l~fc--LadpgdafLvPtPyY~gfdrdl~~r  190 (471)
T KOG0256|consen  115 AMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVV--TNGATSANETLMFC--LADPGDAFLVPTPYYPGFDRDLRWR  190 (471)
T ss_pred             hhcccccCchHHHHHHHHHHHHHhCCCCccCccceEE--ecccchhhHHHHHH--hcCCCceeeecCCCCCcccccceec
Confidence            5677889999999999999876544  4678999999  99999999998433  36799999999999999977766 6


Q ss_pred             CCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCC
Q 012647          197 ARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG  273 (459)
Q Consensus       197 ~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~  273 (459)
                      .|+++++|.+...++++++.+++|+++.++   ..+.+-+++.||+||.|++++++++..++++|.++++.+|+||+|.+
T Consensus       191 Tgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~  270 (471)
T KOG0256|consen  191 TGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAG  270 (471)
T ss_pred             cCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcc
Confidence            799999999988889999999999998762   34677888999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCChhHHHHHHh----cCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHH
Q 012647          274 FASGSLDNDASSVRLFAT----RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGA  349 (459)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~----~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (459)
                      -.++..  ...++.....    ..+++.++.|+||.+|+||+|+|.++  +.++.    +.+...+.  ..+...+...|
T Consensus       271 sVF~~~--~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviY--S~ne~----VvsaA~km--ssf~~vSs~tQ  340 (471)
T KOG0256|consen  271 SVFDKS--EFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIY--SNNED----VVSAATKM--SSFGLVSSQTQ  340 (471)
T ss_pred             cccCcc--CceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEE--ecChH----HHHHHHHH--hhccCCcHHHH
Confidence            998752  4445544433    23589999999999999999999994  45666    55554444  33557889999


Q ss_pred             HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC-------C----HHHHH
Q 012647          350 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-------N----KAQSD  418 (459)
Q Consensus       350 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-------~----~~~~~  418 (459)
                      ..++.+|+|..+.   ++++++.+++++.+.+++.+.|+ ++|    +.+...++|+|+|+++       +    -++++
T Consensus       341 ~~la~LLSD~~f~---~~yl~en~~Rl~~rh~~~~~gLk-~lg----I~cl~s~AGlF~wvDlr~lL~s~tfe~El~Lw~  412 (471)
T KOG0256|consen  341 YLLASLLSDEEFT---REYLRENNKRLRIRHRYIVEGLK-ALG----IPCLKSNAGLFCWVDLRKLLTSLTFEGELELWE  412 (471)
T ss_pred             HHHHHHhchHHHH---HHHHHHHHHHHHHHHHHHHhhHH-hcC----CceeecCCeeEEEEEhHHhcCcCChHHHHHHHH
Confidence            9999999997776   56689999999999999999999 998    5899999999999975       1    24578


Q ss_pred             HHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHHHhh
Q 012647          419 NMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       419 ~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                      +++++.++.+.||.          |++|++..++.++.++++|++++.+
T Consensus       413 ~i~~~vklnlSpG~s~~C~EpGWFRvcFAn~~~~t~~~am~Ri~~~~~~  461 (471)
T KOG0256|consen  413 RILDNVKLNLSPGSSCHCHEPGWFRVCFANMSEETLEVAMRRLKQFLDS  461 (471)
T ss_pred             HHHHhhccccCCCCcceecCCCeEEEEeccCCHHHHHHHHHHHHHHHHh
Confidence            89988899999993          9999997777777799999998764

>PRK06225 aspartate aminotransferase; Provisional

Probab=100.00  E-value=4.2e-40  Score=327.07  Aligned_cols=332  Identities=16%  Similarity=0.187  Sum_probs=256.9

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      ..++|+|+.|.+    ..++ ++.+.+++.+.+.......|.+..|.+++|+++++++..      ++++|++  |+|++
T Consensus        27 ~~~~i~l~~~~~----~~~~-~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~------~~~~v~~--~~g~t   93 (380)
T PRK06225         27 DKEMIWMGQNTN----HLGP-HEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDLGL------DDDEALI--TAGAT   93 (380)
T ss_pred             cCCeEEccCCCC----CCCC-CHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhcCC------CCCcEEE--eCCHH
Confidence            357999999876    4443 788999999888654446798889999999999999742      3788999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeec-CCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD-PKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~-~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      ++++++..  ..+.+||+|++++|+|..+...++..|++++++|++. ++++.+|++.+++.+++   +++++++++|||
T Consensus        94 ~al~~~~~--~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~---~~~~v~l~~p~N  168 (380)
T PRK06225         94 ESLYLVMR--AFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDE---NTRLIYLIDPLN  168 (380)
T ss_pred             HHHHHHHH--HhcCCCCEEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCC---CceEEEEeCCCC
Confidence            99999843  3467999999999999999999999999999999742 33578999999998875   677888889999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      |||.+++.+++++|+++|++||+++|+||+|.++..+.    . ....+  ..++++++.||||.+|++|+|+||+++  
T Consensus       169 ptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~----~-~~~~~--~~~~~i~~~s~SK~~g~~G~RiG~i~~--  239 (380)
T PRK06225        169 PLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREH----T-LAAEY--APEHTVTSYSFSKIFGMAGLRIGAVVA--  239 (380)
T ss_pred             CCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccC----C-chhhc--CCCCEEEEeechhhcCCccceeEEEec--
Confidence            99999999999999999999999999999998876431    1 11111  235789999999999999999999966  


Q ss_pred             CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCccc
Q 012647          321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSF  399 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~  399 (459)
                       +++.++.+...    ... ..+.+.++|.++...|...      .+++++.++.++++++.+.+.|+ ++ |.  .+. 
T Consensus       240 -~~~l~~~~~~~----~~~-~~~~~~~~~~~a~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~~~~--~~~-  303 (380)
T PRK06225        240 -TPDLIEVVKSI----VIN-DLGTNVIAQEAAIAGLKVK------DEWIDRIRRTTFKNQKLIKEAVD-EIEGV--FLP-  303 (380)
T ss_pred             -CHHHHHHHHHH----Hhc-ccCCCHHHHHHHHHHHhcc------hHHHHHHHHHHHHHHHHHHHHHH-hCcCC--ccc-
Confidence             77755554332    222 2356778888877777542      12346667778888888888998 75 31  112 


Q ss_pred             ccCCcceeeecCC-----CH-HHHHHHHhcccEEEcCC-------C----cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          400 ILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD-------G----RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       400 ~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g-------g----Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      ..+.+|+|+|+.+     +. ++.+.|. ++||.+.||       |    |+|++. ++|++++++++|+++++++
T Consensus       304 ~~~~~g~~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~g~~~~~~~~~~~iR~s~~~-~~e~l~~~~~~l~~~~~~~  377 (380)
T PRK06225        304 VYPSHGNMMVIDISEAGIDPEDLVEYLL-ERKIFVRQGTYTSKRFGDRYIRVSFSI-PREQVEVFCEEFPDVVETL  377 (380)
T ss_pred             cCCCCCeEEEEEcccccCCHHHHHHHHH-HCCEEEcCCcccCcCCCCceEEEEeCC-CHHHHHHHHHHHHHHHHHh
Confidence            2345566777643     33 4455665 569999886       2    999987 8899999999999999875

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=100.00  E-value=3e-40  Score=325.64  Aligned_cols=321  Identities=14%  Similarity=0.104  Sum_probs=240.7

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      .++|+|+.|++    ..++ ++.+.+++.+.+..  ...|++. +.++||++||+++.      +++++|++  |+|+++
T Consensus        22 ~~~i~l~~~~n----~~~~-~~~~~~a~~~~~~~--~~~Y~~~-~~~~Lr~aia~~~~------v~~~~I~i--t~G~~~   85 (360)
T PRK07392         22 DAILDFSASIN----PLGP-PESVIAAIQSALSA--LRHYPDP-DYRELRLALAQHHQ------LPPEWILP--GNGAAE   85 (360)
T ss_pred             ccEEEeCCcCC----CCCC-CHHHHHHHHHHHHH--hhcCCCc-CHHHHHHHHHHHhC------cChhhEEE--CCCHHH
Confidence            46899999876    3443 78888888877653  3678654 56899999999972      45899999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCC---CCCHHHHHHHHHcCCCCcEEEEeCCCC
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTV---GLDFEGMIADIKAAPGGSFILLHGCAH  239 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~---~~d~e~l~~~i~~~~~~~~~ii~~~p~  239 (459)
                      ++.++.   ..+.+||.|++++|+|..|...++.+|++++.+|+++++++   ..|++.+++..    +++++++++|||
T Consensus        86 ~i~~~~---~~l~~g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~nP~  158 (360)
T PRK07392         86 LLTWAG---RELAQLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL----TPNDGLLLNNPH  158 (360)
T ss_pred             HHHHHH---HHhCCCCeEEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhc----cCCCEEEEeCCC
Confidence            999873   23567899999999999999999999999999999644333   24566665432    256788889999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEE
Q 012647          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (459)
Q Consensus       240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (459)
                      ||||.+++++++.++   ++++++ +|+||+|.++.+++.   ..+.....+..+++++++||||.||++|+|+||+++ 
T Consensus       159 NPTG~~~~~~~l~~l---~~~~~~-~IiDE~y~~~~~~~~---~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~-  230 (360)
T PRK07392        159 NPTGKLWSREAILPL---LEQFAL-VVVDEAFMDFLPPDA---EQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIA-  230 (360)
T ss_pred             CCCCCCcCHHHHHHH---HHHCCE-EEEECchhhhccCcc---ccchHHHhhcCCCEEEEEechhhhcCCchheeeeeC-
Confidence            999999997765554   567775 666999999986531   122222344557899999999999999999999965 


Q ss_pred             eCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccc
Q 012647          320 CSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF  399 (459)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~  399 (459)
                        +++.++.+    .... . ..+++.++|.++..+|+++.+       .+..++.++++++.+.+.|+ +++   ++.+
T Consensus       231 --~~~~~~~~----~~~~-~-~~~~s~~~q~~~~~~l~~~~~-------~~~~~~~~~~~r~~l~~~L~-~~~---~~~~  291 (360)
T PRK07392        231 --HPDRLQRW----QQWR-D-PWPVNGLAAAAAIAALADRDF-------QQQTWAWLPPAREALFQGLA-SLP---GLTP  291 (360)
T ss_pred             --CHHHHHHH----HhhC-C-CCCCCHHHHHHHHHHhccHHH-------HHHHHHHHHHHHHHHHHHHH-hCC---CcEE
Confidence              77744443    3322 2 236788999999999987544       24556678889999999998 763   1454


Q ss_pred             ccCCcceeeecCCC---HHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHHHh
Q 012647          400 ILRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       400 ~~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~~~  456 (459)
                      . +.+++|+|+.+.   .++.+.+++++||.+.||.          ||+++.  .++.+++.++|.+++.
T Consensus       292 ~-~~~~~fl~~~~~~~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~--~~~~~~l~~al~~~~~  358 (360)
T PRK07392        292 L-PSAANFLLVQSQGSALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRT--EAENQRLLEALAAILA  358 (360)
T ss_pred             C-CCCCCEEEEEcCCCHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCC--HHHHHHHHHHHHHHhh
Confidence            4 477899998652   3556777777899999872          999985  4556777777776654

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.9e-39  Score=315.93  Aligned_cols=311  Identities=14%  Similarity=0.122  Sum_probs=233.5

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +.++|+|+.|++    .+++ ++.+.+++.+.+..+....|+ ..|.++||+++++++... +  +++++|++  |+|++
T Consensus        18 ~~~~i~l~~~~~----~~~~-p~~~~~~~~~~~~~~~~~~Y~-~~~~~~Lr~aia~~~~~~-~--~~~~~i~i--t~Ga~   86 (335)
T PRK14808         18 KRDRTYLALNEN----PFPF-PEDLVDEVFRRLNSDTLRIYY-DSPDEELIEKILSYLDTD-F--LSKNNVSV--GNGAD   86 (335)
T ss_pred             CCceeEecCCCC----CCCC-CHHHHHHHHHHhhhhhhhcCC-CCChHHHHHHHHHHhCCC-C--CCcceEEE--cCCHH
Confidence            358999999987    4554 888999988876543324464 458999999999998654 2  56899999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      +++.++..   .+   |.|++++|+|..|...++.+|++++.+|+++  ++.++...    +.    .+++++++|||||
T Consensus        87 ~~i~~~~~---~~---d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~----~~----~~~~i~i~nP~NP  150 (335)
T PRK14808         87 EIIYVMML---MF---DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTK--DLRIPEVN----VG----EGDVVFIPNPNNP  150 (335)
T ss_pred             HHHHHHHH---Hh---CcEEECCCCHHHHHHHHHHcCCeEEEecCCC--cCCCChhH----cc----CCCEEEEeCCCCC
Confidence            99999833   23   7899999999999999999999999999842  34444321    22    4568888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+++++++++|+    +++++||+||+|.+|...    ...   ..+...+++++++||||.||++|+|+||+++   
T Consensus       151 TG~~~s~~~l~~l~----~~~~~ii~DE~Y~~f~~~----~~~---~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~---  216 (335)
T PRK14808        151 TGHVFEREEIERIL----KTGAFVALDEAYYEFHGE----SYV---DLLKKYENLAVIRTFSKAFSLAAQRIGYVVS---  216 (335)
T ss_pred             CCCCcCHHHHHHHH----hcCCEEEEECchhhhcCC----chH---HHHHhCCCEEEEEechhhccCcccceEEEEe---
Confidence            99999999988886    479999999999998521    111   2234456899999999999999999999976   


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  401 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  401 (459)
                      +++.++.    +.....  ..+.+.++|.++..++++.++       +++.++.+.++++.+.+.|+ ++|    +++.+
T Consensus       217 ~~~~~~~----l~~~~~--~~~~~~~~q~a~~~~l~~~~~-------~~~~~~~~~~~r~~l~~~L~-~~g----~~~~~  278 (335)
T PRK14808        217 SEKFIDA----YNRVRL--PFNVSYVSQMFAKVALDHREI-------FEERTKFIVEERERMKSALR-EMG----YRITD  278 (335)
T ss_pred             CHHHHHH----HHHhcC--CCCCCHHHHHHHHHHHhCHHH-------HHHHHHHHHHHHHHHHHHHH-HCC----CEECC
Confidence            7774444    433332  235677888888777765422       35566777788899999999 876    56677


Q ss_pred             CCcceeeecCC---CHHHHHHHHhcccEEEcCCC---cEEEccCChhhHHHHHHHHHHH
Q 012647          402 RQIGMFSFTGL---NKAQSDNMTNKWHVYMTKDG---RISLAGLSLAKCEYLADAIIDS  454 (459)
Q Consensus       402 ~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~gg---Ris~~~~~~e~i~~~~~~l~~~  454 (459)
                      ++| .|+|+.+   +.+.+...+.++||.++.-.   |||++  +.+++++++++|+++
T Consensus       279 ~~g-~f~~~~l~~~~~~~~~~~l~~~Gi~V~~~~~~~Risi~--~~~~~~~~~~~l~~~  334 (335)
T PRK14808        279 SRG-NFVFIFMEKEEKERLLEHLRAKNIAVRSFREGVRITIG--KREENDMILKELEVF  334 (335)
T ss_pred             CCC-eEEEEeCCCccHHHHHHHHHHCCeEEEECCCCeEEecC--CHHHHHHHHHHHHhh
Confidence            765 4667654   33344444445799998642   99988  568899999998753

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=4e-39  Score=316.41  Aligned_cols=319  Identities=16%  Similarity=0.134  Sum_probs=241.1

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      +..++|+.|++    ..++ |+.+.+++.+.+.......|++ .+.+++|+++|+++.      +++++|++  |+|+++
T Consensus        22 ~~~~~l~~~~~----~~~~-p~~~~~a~~~~~~~~~~~~y~~-~~~~~lr~~ia~~~~------~~~~~i~i--t~G~~~   87 (351)
T PRK14807         22 PYKYKMDANET----PFEL-PEEVIKNIQEIVKSSQVNIYPD-PTAEKLREELARYCS------VVPTNIFV--GNGSDE   87 (351)
T ss_pred             CceeEccCCCC----CCCC-CHHHHHHHHHHhhcCcccCCCC-ccHHHHHHHHHHHhC------CCcccEEE--ecCHHH
Confidence            35688999987    4443 7889999888775433467854 457999999999963      33789999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT  242 (459)
                      ++.++..  ..+.+||+|++++|+|..|...++..|++++.++++  +++++|++.+++++++  .+++++++++|||||
T Consensus        88 ~l~~~~~--~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~~--~~~k~v~l~~p~NPt  161 (351)
T PRK14807         88 IIHLIML--AFINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLK--EDYTYDVGSFIKVIEK--YQPKLVFLCNPNNPT  161 (351)
T ss_pred             HHHHHHH--HhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecC--CCCCCCHHHHHHHhhc--cCCCEEEEeCCCCCC
Confidence            9999843  347799999999999999999999999999999984  4578999999999874  256778889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCC
Q 012647          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (459)
Q Consensus       243 G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (459)
                      |.+++.+++++|++   +++.++|+||+|.++. +.   ...   ......+++++++||||.||+||+|+||+++   +
T Consensus       162 G~~~~~~~l~~l~~---~~~~~~ivDe~y~~~~-~~---~~~---~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~---~  228 (351)
T PRK14807        162 GSVIEREDIIKIIE---KSRGIVVVDEAYFEFY-GN---TIV---DVINEFENLIVLRTLSKAFGLAGLRVGYAVA---N  228 (351)
T ss_pred             CCCCCHHHHHHHHH---hCCCEEEEeCcchhhc-cc---chH---HHhhhCCCEEEEecchHhcccchhceeeeec---C
Confidence            99999888777764   5577899999998874 21   111   2234457899999999999999999999965   8


Q ss_pred             hhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC
Q 012647          323 SDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR  402 (459)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~  402 (459)
                      ++.++.+    ......  .+.+.++|.++..+|+++.        +++..+.++++++.+.+.|+ ++.   ++.+. +
T Consensus       229 ~~~~~~~----~~~~~~--~~~~~~~q~~~~~~l~~~~--------~~~~~~~~~~~r~~l~~~l~-~~~---g~~~~-~  289 (351)
T PRK14807        229 ENILKYL----NLVKSP--YNINSLSQVIALKVLRTGV--------LKERVNYILNERERLIKELS-KIP---GIKVY-P  289 (351)
T ss_pred             HHHHHHH----HHccCC--CCcCHHHHHHHHHHHhHHH--------HHHHHHHHHHHHHHHHHHHH-hCC---CcEEC-c
Confidence            8844444    333322  2567888999988887532        24455667788888999998 762   15655 4


Q ss_pred             CcceeeecCCC-HHHHHHHHhcccEEEcCCC---------cEEEccCChhhHHHHHHHHHHHH
Q 012647          403 QIGMFSFTGLN-KAQSDNMTNKWHVYMTKDG---------RISLAGLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       403 ~~g~f~~~~l~-~~~~~~ll~~~gI~v~~gg---------Ris~~~~~~e~i~~~~~~l~~~~  455 (459)
                      .+|+|+|+.+. .+.+.+.+.++||.+.+++         ||+++  +.++.+.++++|++++
T Consensus       290 ~~~~~~~i~~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~  350 (351)
T PRK14807        290 SKTNFILVKFKDADYVYQGLLERGILVRDFSKVEGLEGALRITVS--SCEANDYLINGLKELL  350 (351)
T ss_pred             CCccEEEEEcCCHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEcC--CHHHHHHHHHHHHHhh
Confidence            45778898763 3444444444699986641         99998  5678899999998754

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=3e-39  Score=315.23  Aligned_cols=309  Identities=17%  Similarity=0.200  Sum_probs=236.1

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      .+.|+|+.|++    .+++ ++.+.+++.+.+.......| |..|.+++|+++++++.      +++++|++  |+|+++
T Consensus        18 ~~~i~l~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~Y-~~~g~~~lr~~ia~~~~------~~~~~I~~--t~G~~~   83 (337)
T PRK03967         18 NYRIWLDKNEN----PFDL-PEELKEEIFEELKRVPFNRY-PHITSDPLREAIAEFYG------LDAENIAV--GNGSDE   83 (337)
T ss_pred             CceEEecCCCC----CCCC-CHHHHHHHHHHhhcCccccC-CCCCHHHHHHHHHHHhC------cCcceEEE--cCCHHH
Confidence            46799999986    3433 78889988887754323678 45799999999999974      45899999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT  242 (459)
                      ++.++.   ..+ +||+|++++|+|..|...++..|++++.++++  +++++|++.+++.+.    +++++++++|||||
T Consensus        84 ~l~~~~---~~~-~gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~----~~~~v~~~~P~NPt  153 (337)
T PRK03967         84 LISYLV---KLF-EGKHIVITPPTFGMYSFYAKLNGIPVIDVPLK--EDFTIDGERIAEKAK----NASAVFICSPNNPT  153 (337)
T ss_pred             HHHHHH---HHh-CCCeEEEeCCChHHHHHHHHHcCCeEEEeecC--CCCCcCHHHHHHhcc----CCCEEEEeCCCCCC
Confidence            998863   233 79999999999999999899999999999984  357899999987653    45677789999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCC
Q 012647          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (459)
Q Consensus       243 G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (459)
                      |.+++.+++.+++    ++++++|+||+|.++...       +........+++++++||||.||++|+|+||+++   +
T Consensus       154 G~~~~~~~l~~i~----~~~~~ii~De~y~~~~~~-------~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~---~  219 (337)
T PRK03967        154 GNLQPEEEILKVL----ETGKPVVLDEAYAEFSGK-------SLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIA---N  219 (337)
T ss_pred             CCCCCHHHHHHHH----hcCCEEEEECchhhhccc-------chHHHHhhCCCEEEEecchHhhcchhhhheeeec---C
Confidence            9999988766664    479999999999988632       1112334456899999999999999999999966   7


Q ss_pred             hhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC
Q 012647          323 SDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR  402 (459)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~  402 (459)
                      ++.++.    +..... .+ +.+.++|.++..+|++.++       +.+.++.+.++++.+.+.|. +.        ..+
T Consensus       220 ~~~i~~----~~~~~~-~~-~~~~~~q~~~~~~l~~~~~-------~~~~~~~~~~~r~~l~~~L~-~~--------~~~  277 (337)
T PRK03967        220 EEIIDA----LYRIKP-PF-SLNILTMKIVRLALDHYDL-------IEERIDYIIKERERVRRELG-EY--------AYP  277 (337)
T ss_pred             HHHHHH----HHhhcC-CC-CCCHHHHHHHHHHHhCHHH-------HHHHHHHHHHHHHHHHHHhc-cC--------cCC
Confidence            774444    443332 23 6678999999988876543       23444555667778888887 54        235


Q ss_pred             CcceeeecCCCHHHHHHHHhcccEEEcCCC-------cEEEccCChhhHHHHHHHHHHHHh
Q 012647          403 QIGMFSFTGLNKAQSDNMTNKWHVYMTKDG-------RISLAGLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       403 ~~g~f~~~~l~~~~~~~ll~~~gI~v~~gg-------Ris~~~~~~e~i~~~~~~l~~~~~  456 (459)
                      .+++|+|+.++  +.+.|++ +||.+++++       ||+++  +.++.+.++++|+++..
T Consensus       278 ~~~~~~~~~~~--~~~~l~~-~gi~v~~~~~~~~~~~Ri~~~--~~~~~~~l~~~l~~~~~  333 (337)
T PRK03967        278 SDANFLLLKLD--AYDYLLE-NGIVVRKLSGRLEGHIRVTVG--KREENDEFIKALKEIKE  333 (337)
T ss_pred             CCCcEEEEhHH--HHHHHHH-CCEEEEeCCCCCCCeEEEecC--CHHHHHHHHHHHHHHHH
Confidence            77899998663  5666666 599997642       99988  45778888888887664

>PRK07908 hypothetical protein; Provisional

Probab=100.00  E-value=5.5e-39  Score=315.39  Aligned_cols=316  Identities=16%  Similarity=0.135  Sum_probs=242.6

Q ss_pred             CCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        81 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      ..++++||+.|++    ..++ ++.+.+++.+.+..  ...|++..|.+++|+++++++.      +++++|++  |+|+
T Consensus        20 ~~~~~~~l~~~~~----~~~~-~~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~~~------~~~~~I~i--t~Ga   84 (349)
T PRK07908         20 AGPGLLDFAVNVR----HDTP-PEWLRERLAARLGD--LAAYPSTEDERRARAAVAARHG------RTPDEVLL--LAGA   84 (349)
T ss_pred             CCCCeEEecCCCC----CCCC-CHHHHHHHHHHhhH--hhcCCCccchHHHHHHHHHHhC------cChhhEEE--CCCH
Confidence            3568999999986    3333 78899999887753  3679888899999999999973      34899999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      ++++.++..    +.+ +.++++.|+|..+...++..|++++.+|+++  ++++|++.+    ++   ++++++++||||
T Consensus        85 ~~al~~~~~----l~~-~~viv~~P~y~~~~~~~~~~G~~i~~v~~~~--~~~~d~~~l----~~---~~~~i~l~np~N  150 (349)
T PRK07908         85 AEGFALLAR----LRP-RRAAVVHPSFTEPEAALRAAGIPVHRVVLDP--PFRLDPAAV----PD---DADLVVIGNPTN  150 (349)
T ss_pred             HHHHHHHHh----cCC-CeEEEeCCCChHHHHHHHHcCCEEEeeccCc--ccCcChhHh----cc---CCCEEEEcCCCC
Confidence            999998732    566 5677889999999999999999999999952  378888754    32   567888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      |||.+++.+++.+   +|+ ++.++|+||+|.++..+.    ..++..  ...+++++++||||.|+++|+|+||+++  
T Consensus       151 PTG~~~~~~~l~~---l~~-~~~~iIvDe~y~~~~~~~----~~~l~~--~~~~~~i~i~S~SK~~~l~GlRiG~~~~--  218 (349)
T PRK07908        151 PTSVLHPAEQLLA---LRR-PGRILVVDEAFADAVPGE----PESLAG--DDLPGVLVLRSLTKTWSLAGLRVGYALG--  218 (349)
T ss_pred             CCCCCcCHHHHHH---HHh-cCCEEEEECcchhhccCC----cccccc--ccCCCEEEEeecccccCCccceeeeeec--
Confidence            9999999886555   455 578899999999885431    122222  1335799999999999999999999966  


Q ss_pred             CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012647          321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  400 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  400 (459)
                       +++.++.+    ...... + +.+...+.++..++.+..     .+++++.+++++++++++.+.|+ ++|    +++.
T Consensus       219 -~~~~~~~~----~~~~~~-~-~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~r~~l~~~L~-~~~----~~~~  281 (349)
T PRK07908        219 -APDVLARL----TRGRAH-W-PVGTLQLEAIAACCAPRA-----VAEAAADAARLAADRAEMVAGLR-AVG----ARVV  281 (349)
T ss_pred             -CHHHHHHH----HhcCCC-C-CccHHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHH-hCC----cEec
Confidence             77754444    332222 2 445556666666666332     24467889999999999999999 775    6777


Q ss_pred             cCCcceeeecCCC-HHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHHHh
Q 012647          401 LRQIGMFSFTGLN-KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       401 ~~~~g~f~~~~l~-~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~~~  456 (459)
                      .|.+|+|+|+.+. .+.+..+++++||.+.||.          |||++  +++++++++++|++++.
T Consensus       282 ~p~~g~~~~~~~~~~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~~--~~~~~~~l~~al~~~~~  346 (349)
T PRK07908        282 DPAAAPFVLVRVPDAELLRKRLRERGIAVRRGDTFPGLDPDYLRLAVR--PRAEVPVLVQALAEILK  346 (349)
T ss_pred             cCCCceEEEEECCcHHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEeC--CCccHHHHHHHHHHHHh
Confidence            7788999999875 4556666677899998861          99996  67899999999988764

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.5e-39  Score=319.05  Aligned_cols=311  Identities=18%  Similarity=0.220  Sum_probs=236.8

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhH
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (459)
                      ..++|+.+++    ..++ ++.+        .......| |.....++++++++++.      +++++|++  |+|++++
T Consensus        29 ~~~~l~~Nen----p~~~-~~~~--------~~~~~~~Y-p~~~~~~l~~~~a~~~g------~~~~~I~~--~~Gs~e~   86 (351)
T PRK01688         29 GDVWLNANEY----PTAV-EFQL--------TQQTLNRY-PECQPKAVIENYAAYAG------VKPEQVLV--SRGADEG   86 (351)
T ss_pred             CceEecCCCC----CCCC-Chhh--------cccccccC-CCCChHHHHHHHHHHhC------CCHHHEEE--cCCHHHH
Confidence            4689998876    3332 3332        11123567 55556899999999953      24899999  9999999


Q ss_pred             HHHHHHHHHHhCCC-CEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC
Q 012647          164 LRLAAALIERYFPG-AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (459)
Q Consensus       164 ~~l~~~~~~~~~~g-d~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT  242 (459)
                      +.++..  ..+.+| |+|+++.|+|..|...++..|++++.+|++  +++++|++.+++++ +   +++++++|||||||
T Consensus        87 i~~~~~--~~~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~--~~~~~d~~~l~~~~-~---~~~lv~l~nPnNPT  158 (351)
T PRK01688         87 IELLIR--AFCEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTL--DNWQLDLPAIADNL-D---GVKVVYVCSPNNPT  158 (351)
T ss_pred             HHHHHH--HhcCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecC--CCCCCCHHHHHHhc-c---CCcEEEEeCCCCCC
Confidence            999843  336686 999999999999999999999999999984  35899999999887 3   67788889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCC
Q 012647          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (459)
Q Consensus       243 G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (459)
                      |.+++.+++++|++.|++ +.+||+||+|.+|...   .   +...++...+++++++||||.||++|+|+||+++   +
T Consensus       159 G~~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~~---~---s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~---~  228 (351)
T PRK01688        159 GNLINPQDLRTLLELTRG-KAIVVADEAYIEFCPQ---A---SLAGWLAEYPHLVILRTLSKAFALAGLRCGFTLA---N  228 (351)
T ss_pred             CCCCCHHHHHHHHHhCCC-CcEEEEECchhhcCCC---C---ChHHHHhhCCCEEEEecchHhhcCHHHHHhHHhC---C
Confidence            999999999999999986 6889999999998732   1   2223445567999999999999999999999965   7


Q ss_pred             hhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC
Q 012647          323 SDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR  402 (459)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~  402 (459)
                      ++.++.    +.+.... + +.+.++|.++..+|.+...     +.+++.++.++++|+++.+.|+ +++.   +..+.|
T Consensus       229 ~~~i~~----l~~~~~~-~-~v~~~~~~~a~~~L~~~~~-----~~~~~~~~~~~~~r~~l~~~L~-~~~~---~~~~~p  293 (351)
T PRK01688        229 EEVINL----LLKVIAP-Y-PLSTPVADIAAQALSPQGI-----AAMRERVAEINANRQWLIAALK-EIPC---VEQVFD  293 (351)
T ss_pred             HHHHHH----HHhccCC-C-CCCHHHHHHHHHHHhcchH-----HHHHHHHHHHHHHHHHHHHHHH-hCCC---CCeECC
Confidence            884444    4333222 3 5667778888778875421     3356777888899999999999 8741   443456


Q ss_pred             CcceeeecCCC--HHHHHHHHhcccEEEcCC----C-----cEEEccCChhhHHHHHHHHH
Q 012647          403 QIGMFSFTGLN--KAQSDNMTNKWHVYMTKD----G-----RISLAGLSLAKCEYLADAII  452 (459)
Q Consensus       403 ~~g~f~~~~l~--~~~~~~ll~~~gI~v~~g----g-----Ris~~~~~~e~i~~~~~~l~  452 (459)
                      .+++|+|+.+.  .++.+.|++ +||.++++    |     |||++  ++++++.++++|+
T Consensus       294 s~~nfi~~~~~~~~~l~~~L~~-~gi~vr~~~~~~~~~~~iRis~~--~~~e~~~l~~al~  351 (351)
T PRK01688        294 SETNYILARFTASSAVFKSLWD-QGIILRDQNKQPGLSNCLRITIG--TREECQRVIDALR  351 (351)
T ss_pred             CCCcEEEEEcCCHHHHHHHHHH-CCeEEEECCCcCCCCCeEEEeCC--CHHHHHHHHHhhC
Confidence            67889888763  345666765 69999864    2     99998  6799999998873

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=7.1e-39  Score=315.72  Aligned_cols=296  Identities=20%  Similarity=0.259  Sum_probs=228.9

Q ss_pred             CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCC-CEEEEcCCCCcchHHHhhhCC
Q 012647          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG-AKVLISSPTWGNHKNIFNDAR  198 (459)
Q Consensus       120 ~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~g-d~Vlv~~p~y~~~~~~~~~~G  198 (459)
                      ..|+. .+..+||+++|+++.      +++++|++  |+|+++++.++..  ..+.+| |+|++++|+|..|...++..|
T Consensus        54 ~~Y~~-~~~~~lr~~ia~~~~------~~~~~I~~--t~G~~~~l~~~~~--~~~~~g~~~vlv~~p~y~~~~~~~~~~g  122 (364)
T PRK04781         54 RRYPD-PQPPGLRSALAALYG------CAPEQLLI--GRGSDEAIDLLVR--ALCVPGRDAVLVTPPVFGMYAVCARLQN  122 (364)
T ss_pred             ccCCC-CCHHHHHHHHHHHhC------cChHHEEE--eCCHHHHHHHHHH--HhcCCCCCeEEEcCCChHHHHHHHHHcC
Confidence            56754 457999999999973      34889999  9999999999843  335688 799999999999999889999


Q ss_pred             CCeeeeeeec-CCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCC
Q 012647          199 VPWSEYRYYD-PKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASG  277 (459)
Q Consensus       199 ~~v~~v~~~~-~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~  277 (459)
                      ++++.+|+.+ ++++.+|++++++.+..  ++++++++++||||||.+++.+++++|++.|+ ++++||+||+|.+|.+.
T Consensus       123 ~~~~~v~~~~~~~~~~~d~~~l~~~~~~--~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~  199 (364)
T PRK04781        123 APLVEVPLVDGADGFHADVPAIVAAALA--SNAKLVFLCSPSNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEFSDV  199 (364)
T ss_pred             CEEEEEecCCCccCCCcCHHHHHHHHhc--cCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhhcCC
Confidence            9999999843 34567899998766543  36788888999999999999999999999986 48999999999999753


Q ss_pred             CCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhC
Q 012647          278 SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVG  357 (459)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  357 (459)
                      .      +...+.+..+++++++||||.||++|+|+||+++   +++.+    +.+.+.... + +.+.++|.++..+|.
T Consensus       200 ~------~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~---~~~l~----~~l~~~~~~-~-~~~~~~~~~a~~~l~  264 (364)
T PRK04781        200 P------SAVGLLARYDNLAVLRTLSKAHALAAARIGSLIA---NAELI----AVLRRCQAP-Y-PVPTPCAALAEQALS  264 (364)
T ss_pred             c------chHHHHhhCCCEEEEecChhhcccccceeeeeeC---CHHHH----HHHHhccCC-C-CCCHHHHHHHHHHHh
Confidence            1      2223345567899999999999999999999966   88844    444443322 3 667888888888888


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCC-HHHHHHHHhcccEEEcCCC----
Q 012647          358 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN-KAQSDNMTNKWHVYMTKDG----  432 (459)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~-~~~~~~ll~~~gI~v~~gg----  432 (459)
                      ++.+     +.+.+..+.++++++.+.+.|+ +++   ++..+.|.+|+|+|+.+. .+.+...++++||.+.+|.    
T Consensus       265 ~~~~-----~~~~~~~~~~~~~r~~l~~~L~-~~~---~~~~~~p~~g~f~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~  335 (364)
T PRK04781        265 APAL-----AVTARRVAEVRAERERLHAALA-QLP---GVRRVYPSQGNFLLVRFDDAEAAFQALLAAGVVVRDQRAAPR  335 (364)
T ss_pred             cccH-----HHHHHHHHHHHHHHHHHHHHHH-hCC---CCCeECCCCCcEEEEEcCCHHHHHHHHHHCCeEEeeCCCCCC
Confidence            7543     1234555678999999999999 873   144345677899998773 3444444456799998862    


Q ss_pred             -----cEEEccCChhhHHHHHHHHHHHH
Q 012647          433 -----RISLAGLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       433 -----Ris~~~~~~e~i~~~~~~l~~~~  455 (459)
                           ||+++  +.+++++++++|+++.
T Consensus       336 ~~~~~Ris~~--~~~~~~~l~~al~~~~  361 (364)
T PRK04781        336 LSDALRITLG--TPEQNDRVLAALQRTQ  361 (364)
T ss_pred             CCCeEEEeCC--CHHHHHHHHHHHHHHH
Confidence                 99998  5788999999998754

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=1.6e-38  Score=314.60  Aligned_cols=322  Identities=16%  Similarity=0.156  Sum_probs=251.1

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      ..++++|+.|.+    ...+ ++.+.+++.+....  ...|++.. ..++|+++|+++..      ++++|++  |+|++
T Consensus        31 ~~~~i~l~~~~~----~~~~-~~~~~~a~~~~~~~--~~~y~~~~-~~~lr~~ia~~~~~------~~~~i~~--t~G~~   94 (367)
T PRK02731         31 IADIIKLASNEN----PLGP-SPKAIEAIRAAADE--LHRYPDGS-GFELKAALAEKFGV------DPERIIL--GNGSD   94 (367)
T ss_pred             CCceEEecCCCC----CCCC-CHHHHHHHHHHHHh--hcCCCCCc-HHHHHHHHHHHhCc------CHHHEEE--cCCHH
Confidence            457999999975    2222 67788888887653  36786544 47999999999732      3789999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      +++.++.  ...+.+||+|++++|+|..|...++..|++++.+|.   +++++|++.+++.+++   +++++++++||||
T Consensus        95 ~~l~~~~--~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~---~~~~~~~~~l~~~~~~---~~~~v~l~~p~np  166 (367)
T PRK02731         95 EILELLA--RAYLGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPA---KDYGHDLDAMLAAVTP---RTRLVFIANPNNP  166 (367)
T ss_pred             HHHHHHH--HHhcCCCCEEEEecCCHHHHHHHHHHcCCeEEEecc---cCCCCCHHHHHHHhCC---CCcEEEEeCCCCC
Confidence            9998873  333679999999999999999888999999999987   2578999999999874   6778888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+++.+++++|++.|+ +|+++|+||+|.++.+++.  ...++ ...+..+++++++||||.||++|+|+||+++   
T Consensus       167 tG~~~~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~--~~~~~-~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~---  239 (367)
T PRK02731        167 TGTYLPAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKD--YEDGL-ELVAKFPNVVVTRTFSKAYGLAGLRVGYGIA---  239 (367)
T ss_pred             CCcCCCHHHHHHHHHhCC-CCcEEEEECcHHHhccCcC--cccHH-HHHhhcCCEEEEeeehHhhcCcccceeeeeC---
Confidence            999999999999999875 6999999999998886432  12233 2234457899999999999999999999966   


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  401 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  401 (459)
                      +++..+.    +...... + +.+.++|.++..+|++..       .+++.++.++++++.+.+.|+ ++|    +.+. 
T Consensus       240 ~~~~~~~----l~~~~~~-~-~~~~~~~~~a~~~l~~~~-------~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~-  300 (367)
T PRK02731        240 PPEIIDA----LNRVRQP-F-NVNSLALAAAVAALDDDA-------FVEKSRALNAEGMAWLTEFLA-ELG----LEYI-  300 (367)
T ss_pred             CHHHHHH----HHHccCC-C-CCCHHHHHHHHHHhCCHH-------HHHHHHHHHHHHHHHHHHHHH-HCC----CccC-
Confidence            7774444    4333222 2 556788999988887643       256778889999999999999 876    4555 


Q ss_pred             CCcceeeecCC----CH-HHHHHHHhcccEEEcCC------C--cEEEccCChhhHHHHHHHHHHHHh
Q 012647          402 RQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKD------G--RISLAGLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       402 ~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~g------g--Ris~~~~~~e~i~~~~~~l~~~~~  456 (459)
                      +.+|+|+|+.+    +. ++.+.|.+ +||.+.++      +  ||+++  +.++++.++++|+++++
T Consensus       301 ~~~g~~~~i~~~~~~~~~~~~~~L~~-~gI~v~~~~~~~~~~~iRis~~--~~~e~~~l~~aL~~~~~  365 (367)
T PRK02731        301 PSVGNFILVDFDDGKDAAEAYQALLK-RGVIVRPVAGYGLPNALRITIG--TEEENRRFLAALKEFLA  365 (367)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHH-CCEEEEeCCCCCCCCeEEEecC--CHHHHHHHHHHHHHHHh
Confidence            44577888765    33 44566655 69999886      2  99987  67899999999998875

>PRK03321 putative aminotransferase; Provisional

Probab=100.00  E-value=1.3e-38  Score=313.27  Aligned_cols=323  Identities=15%  Similarity=0.156  Sum_probs=246.4

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      +++|+|+.|.+    ..++ ++.+.+++.+.+..  ...| |..|.+++|+++|+++.      +++++|++  |+|+++
T Consensus        22 ~~~i~l~~~~~----~~~~-~~~~~~a~~~~~~~--~~~y-~~~g~~~lr~~ia~~~~------~~~~~I~~--~~G~~~   85 (352)
T PRK03321         22 PGAIKLSSNET----PFGP-LPSVRAAIARAAAG--VNRY-PDMGAVELRAALAEHLG------VPPEHVAV--GCGSVA   85 (352)
T ss_pred             ccceeccCCCC----CCCC-CHHHHHHHHHHHHh--cCcC-CCCcHHHHHHHHHHHhC------cCHHHEEE--CCCHHH
Confidence            36899999987    4433 67899999887653  2557 56899999999999974      33789999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT  242 (459)
                      ++.++.  ...+.+||+|+++.|+|..|...++..|++++.+|++  .++++|++.+++.+++   +++++++++|||||
T Consensus        86 ~l~~~~--~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~~~~---~~~~v~l~~p~NPt  158 (352)
T PRK03321         86 LCQQLV--QATAGPGDEVIFAWRSFEAYPILVQVAGATPVQVPLT--PDHTHDLDAMAAAITD---RTRLIFVCNPNNPT  158 (352)
T ss_pred             HHHHHH--HHhcCCCCEEEeCCCCHHHHHHHHHHcCCEEEEccCC--CCCCCCHHHHHHhhcc---CCCEEEEeCCCCCc
Confidence            998873  3346799999999999999999999999999999984  2478999999998875   66777788999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCC
Q 012647          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (459)
Q Consensus       243 G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (459)
                      |.+++.+++.++++.| +++++||+||+|+++.+++.  ...++. .....+++++++||||.||++|+|+||+++   +
T Consensus       159 G~~~~~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~--~~~~~~-~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~---~  231 (352)
T PRK03321        159 GTVVTPAELARFLDAV-PADVLVVLDEAYVEYVRDDD--VPDGLE-LVRDHPNVVVLRTFSKAYGLAGLRVGYAVG---H  231 (352)
T ss_pred             CCCcCHHHHHHHHHhC-CCCeEEEEechHHHhccCcC--CCcHHH-HHhhCCCEEEEecchHHhhhHHHhhhhhcC---C
Confidence            9999999988888876 47999999999999987531  112222 234457899999999999999999999965   7


Q ss_pred             hhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC
Q 012647          323 SDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR  402 (459)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~  402 (459)
                      ++.++.+.    +..  ...+.+.++|.++...|...+   .|    .+..+.+.++++.+.+.|+ +.|    +.+.+ 
T Consensus       232 ~~~~~~~~----~~~--~~~~~s~~~q~~a~~~l~~~~---~~----~~~~~~~~~~r~~~~~~L~-~~~----~~~~~-  292 (352)
T PRK03321        232 PEVIAALR----KVA--VPFSVNSLAQAAAIASLAAED---EL----LERVDAVVAERDRVRAALR-AAG----WTVPP-  292 (352)
T ss_pred             HHHHHHHH----Hhc--CCCCCCHHHHHHHHHHhcCHH---HH----HHHHHHHHHHHHHHHHHHH-HCC----CccCC-
Confidence            77554443    322  223678888888877776432   12    2233344456677889998 776    45444 


Q ss_pred             CcceeeecCCC---HHHHHHHHhcccEEEcCCC----cEEEccCChhhHHHHHHHHHHHHhh
Q 012647          403 QIGMFSFTGLN---KAQSDNMTNKWHVYMTKDG----RISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       403 ~~g~f~~~~l~---~~~~~~ll~~~gI~v~~gg----Ris~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                      .+|+|+|+.+.   .++++.| +++||.+.+.+    ||+++  +.+++++++++|++++..
T Consensus       293 ~~g~~i~i~l~~~~~~~~~~l-~~~gI~v~~~~~~~iRi~~~--~~~~~~~~~~al~~~~~~  351 (352)
T PRK03321        293 SQANFVWLPLGERTADFAAAA-AEAGVVVRPFAGEGVRVTIG--APEENDAFLRAARAWRAG  351 (352)
T ss_pred             CCCCEEEEeCCCCHHHHHHHH-HHCCEEEEccCCCcEEEeeC--CHHHHHHHHHHHHHHhcc
Confidence            45788998652   3445565 55799999853    99986  679999999999988754

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=1.5e-38  Score=309.78  Aligned_cols=285  Identities=14%  Similarity=0.119  Sum_probs=215.6

Q ss_pred             CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCC
Q 012647          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARV  199 (459)
Q Consensus       120 ~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~  199 (459)
                      ..| |.....+||+++|+++...      +++|++  |+|+++++.++..   .+.+| .|++++|+|..|...++..|+
T Consensus        35 ~~Y-p~~~~~~lr~~ia~~~~~~------~~~I~i--t~Gs~~~l~~~~~---~~~~~-~vv~~~P~y~~y~~~~~~~G~  101 (332)
T PRK06425         35 SIY-PEISYTDIEDQIKIYTQGL------KIKVLI--GPGLTHFIYRLLS---YINVG-NIIIVEPNFNEYKGYAFTHGI  101 (332)
T ss_pred             ccC-cCcCHHHHHHHHHHHhCCC------cceEEE--CCCHHHHHHHHHH---HhCCC-cEEEeCCChHHHHHHHHHcCC
Confidence            557 6666899999999996543      788999  9999999999843   35676 577779999999999999999


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~  279 (459)
                      +++.+|+++   +++|.+.+++      .+++++++||||||||.+++.+++++|+++|+++|++||+||+|.++.+++ 
T Consensus       102 ~v~~vp~~~---~~~~~~~l~~------~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~-  171 (332)
T PRK06425        102 RISALPFNL---INNNPEILNN------YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNR-  171 (332)
T ss_pred             eEEEEeCCc---ccCcHHHHhh------cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhcccccc-
Confidence            999999842   3456554432      156677788999999999999999999999999999999999999998642 


Q ss_pred             CCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCCh
Q 012647          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNP  359 (459)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~  359 (459)
                         ..+...+....+++++++||||.||+||+|+||+++   +++.++.    +...... + +.+..++.    ++...
T Consensus       172 ---~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~---~~~li~~----l~~~~~~-~-~~~~~~~~----~l~~~  235 (332)
T PRK06425        172 ---AEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIAT---DDYNMKI----SRKITEP-W-SVCDPAID----FIRSI  235 (332)
T ss_pred             ---chhHHHHhccCCCEEEEeecHHhcCCchhhheeeec---CHHHHHH----HHHcCCC-C-ccCHHHHH----HHHHh
Confidence               123334444557899999999999999999999966   7774444    3332221 2 22232222    22221


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC--CHHHHHHHHhcccEEEcCCC-----
Q 012647          360 ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--NKAQSDNMTNKWHVYMTKDG-----  432 (459)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l--~~~~~~~ll~~~gI~v~~gg-----  432 (459)
                      ..    ..++++.++.++++++.+.+.|+ ++|    +.+..+.+|+|+|+.+  +.++.+.|++ +||.+.||.     
T Consensus       236 ~~----~~~~~~~~~~~~~~r~~l~~~L~-~~g----~~~~~~~~g~f~~~~~~~~~~~~~~l~~-~gi~v~~~~~f~~~  305 (332)
T PRK06425        236 DL----DYVAKHSLDIMENERSYLINNLE-AMG----FRAAGDPSANFITFMIPDAHDFYSYLLK-NGILVRLLDDYECL  305 (332)
T ss_pred             hh----HHHHHHHHHHHHHHHHHHHHHHH-HCC----CEECCCCCceEEEEEcCCHHHHHHHHHH-CCeEEEECCCCCCC
Confidence            21    23457889999999999999999 886    5665444577888766  3455677776 599998861     


Q ss_pred             -----cEEEccCChhhHHHHHHHHHHHH
Q 012647          433 -----RISLAGLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       433 -----Ris~~~~~~e~i~~~~~~l~~~~  455 (459)
                           |||++  +.+++++++++|++++
T Consensus       306 ~~~~iRis~~--~~~~~~~l~~al~~~~  331 (332)
T PRK06425        306 GEQYIRIAIR--RRSFNIKLVNALRNFL  331 (332)
T ss_pred             CCCEEEEEeC--CHHHHHHHHHHHHHHh
Confidence                 99998  5689999999998775

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=5.4e-38  Score=306.09  Aligned_cols=304  Identities=15%  Similarity=0.128  Sum_probs=227.6

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      .++++|+.+++  +.+.|  ++.+..   ..     ...|+ ... .+||+++++++.-.     ++++|++  |+|+++
T Consensus        24 ~~~i~ls~Nen--p~~~~--~~~~~~---~~-----~~~Yp-~~~-~~L~~~ia~~~~~~-----~~~~I~i--~~Gs~e   82 (339)
T PRK06959         24 DAWLDLSTGIN--PHGYP--VPPVPA---DA-----WRRLP-EDD-DGLAACAARYYGAP-----DAAHVLP--VAGSQA   82 (339)
T ss_pred             hhhceeccCCC--CCCCC--CCCCCH---HH-----HHhCC-Cch-HHHHHHHHHHhCCC-----CcccEEE--CcCHHH
Confidence            46799999875  22222  112111   11     14474 444 89999999996432     2589999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT  242 (459)
                      ++.++   ...+.+|| |++++|+|+.|...++..|++++.+|.++        +.+    .+   ..+++++|||||||
T Consensus        83 ~i~~l---~~~~~~g~-v~v~~P~y~~y~~~~~~~g~~~~~v~~~~--------~~~----~~---~~~~v~l~nPnNPT  143 (339)
T PRK06959         83 AIRAL---PALLPRGR-VGIAPLAYSEYAPAFARHGHRVVPLDEAA--------DTL----PA---ALTHLIVVNPNNPT  143 (339)
T ss_pred             HHHHH---HHhcCCCe-EEEcCCCcHHHHHHHHHCCCEEEeecccc--------hhc----cc---cCCEEEEeCCCCCC
Confidence            99875   33466776 89999999999999999999999887731        222    21   33467789999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCC
Q 012647          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (459)
Q Consensus       243 G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (459)
                      |.+++.+++++|++.|++++.++|+||+|.++.+.      .++..+. ..+++++++||||.||++|+|+||+++   +
T Consensus       144 G~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~------~s~~~~~-~~~~vi~l~SfSK~~gl~GlRiGy~v~---~  213 (339)
T PRK06959        144 AERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA------ASLAAHT-DRPGLVVLRSVGKFFGLAGVRAGFVLA---A  213 (339)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc------ccchhcc-CCCCEEEEecChhhcCCcchheEEEec---C
Confidence            99999999999999999999999999999998642      1222222 346799999999999999999999966   7


Q ss_pred             hhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC
Q 012647          323 SDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR  402 (459)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~  402 (459)
                      ++.++.+    ..... .+ +.+.++|.++..+|+++++       .++.++.++++++.+.+.|+ ++|    +++.  
T Consensus       214 ~~li~~l----~~~~~-~~-~vs~~~q~a~~~~L~~~~~-------~~~~~~~~~~~r~~l~~~L~-~~g----~~~~--  273 (339)
T PRK06959        214 PALLAAL----RDALG-AW-TVSGPARHAVRAAFADAAW-------QAAMRERLAADGARLAALLR-AHG----FAVH--  273 (339)
T ss_pred             HHHHHHH----HHhcC-CC-CCcHHHHHHHHHHhCcHHH-------HHHHHHHHHHHHHHHHHHHH-HCC----CCcc--
Confidence            8844444    43332 23 5678899999999987644       46778999999999999999 887    3443  


Q ss_pred             CcceeeecCC-CH-HHHHHHHhcccEEEcCCC-----cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          403 QIGMFSFTGL-NK-AQSDNMTNKWHVYMTKDG-----RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       403 ~~g~f~~~~l-~~-~~~~~ll~~~gI~v~~gg-----Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      .+++|+|+.+ +. ++.+.|.+ +||.++..+     ||++++ +.+++++++++|+++++.+
T Consensus       274 ~~~~f~~~~~~~~~~l~~~l~~-~GI~vr~~~~~~~lRisi~~-~~~e~~~l~~al~~~~~~~  334 (339)
T PRK06959        274 ATPLFSWTDDPRAAALHAALAR-RGIWTRYFAPPPSVRFGLPA-DEAEWQRLEDALAECVPTL  334 (339)
T ss_pred             CcceEEEEeCCCHHHHHHHHHh-CCeEEEECCCCCeEEEECCC-CHHHHHHHHHHHHHHHHHH
Confidence            3578999876 33 44556655 699998753     999965 7789999999999887654

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.9e-38  Score=311.89  Aligned_cols=312  Identities=15%  Similarity=0.140  Sum_probs=235.3

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      .+.++|+.+++    ..++ ++.+     . .. . ...|++ .+.++||+++|+++.      +++++|++  |+|+++
T Consensus        31 ~~~~~l~~ne~----~~~~-~~~~-----~-~~-~-~~~Yp~-~~~~~Lr~aia~~~~------~~~~~I~i--t~Gs~~   88 (354)
T PRK04635         31 RGDIWINANES----PFNN-EYKL-----D-LA-R-LNRYPE-CQPPELINAYSAYAG------VAPEQILT--SRGADE   88 (354)
T ss_pred             CCcEEeeCCCC----CCCC-Chhh-----h-hH-H-hccCCC-CCHHHHHHHHHHHhC------cCHHHEEE--eCCHHH
Confidence            35689999886    3332 3322     1 11 1 266854 468999999999863      34899999  999999


Q ss_pred             HHHHHHHHHHHhCCC-CEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          163 SLRLAAALIERYFPG-AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       163 a~~l~~~~~~~~~~g-d~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      ++.++...  .+.+| |+|++++|+|..|...++..|++++.+|++  +++.+|++.++ .+ +   +++++++||||||
T Consensus        89 ~i~~~~~~--~~~~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~~--~~~~~~~~~l~-~~-~---~~~li~i~nP~NP  159 (354)
T PRK04635         89 AIELLIRA--FCEPGQDSIACFGPTYGMYAISAETFNVGVKALPLT--ADYQLPLDYIE-QL-D---GAKLVFICNPNNP  159 (354)
T ss_pred             HHHHHHHH--hcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecC--CCCCCCHHHHH-hc-c---CCCEEEEeCCCCC
Confidence            99998433  35688 999999999999999999999999999984  35789998886 33 2   6778888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+++.+++++|++.|+  +++||+||+|.++...   .   +...+....+++++++||||.||++|+|+||+++   
T Consensus       160 TG~~~~~~~l~~l~~~~~--~~~vivDeay~~~~~~---~---s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~---  228 (354)
T PRK04635        160 TGTVIDRADIEQLIEMTP--DAIVVVDEAYIEFCPE---Y---SVADLLASYPNLVVLRTLSKAFALAGARCGFTLA---  228 (354)
T ss_pred             CCccCCHHHHHHHHHhCC--CcEEEEeCchHhhccC---c---chHHHHhhCCCEEEEechHHHhhhhHHHHhhhhC---
Confidence            999999999999999876  4999999999988732   1   2223344557899999999999999999999966   


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  401 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  401 (459)
                      +++.++.+    ..... .+ +.+...|.++..+|.+.++     +.+++.++.++++++.+.+.|+ +++.   +.+.+
T Consensus       229 ~~~~~~~l----~~~~~-~~-~~~~~~~~~a~~~l~~~~~-----~~~~~~~~~~~~~r~~l~~~L~-~~~~---~~~~~  293 (354)
T PRK04635        229 NEELIEIL----MRVIA-PY-PVPLPVSEIATQALSEAGL-----ARMKFQVLDLNAQGARLQAALS-MYGG---AKVLE  293 (354)
T ss_pred             CHHHHHHH----HhhcC-CC-CCCHHHHHHHHHHHhcccH-----HHHHHHHHHHHHHHHHHHHHHH-hCCC---ceECC
Confidence            77744443    33222 22 5667777888777765432     2356777889999999999999 8741   46666


Q ss_pred             CCcceeeecCC-CHHHHHHHHhcccEEEcCC------C--cEEEccCChhhHHHHHHHHHHH
Q 012647          402 RQIGMFSFTGL-NKAQSDNMTNKWHVYMTKD------G--RISLAGLSLAKCEYLADAIIDS  454 (459)
Q Consensus       402 ~~~g~f~~~~l-~~~~~~~ll~~~gI~v~~g------g--Ris~~~~~~e~i~~~~~~l~~~  454 (459)
                      ++ |.|+|+.+ +.+.+.++++++||.++++      +  |||++  +.++++.++++|++.
T Consensus       294 ~~-g~f~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~lRis~~--~~e~~~~l~~al~~~  352 (354)
T PRK04635        294 GN-GNYVLAKFDDVDAVFKALWDAGIVARAYKDPRLANCIRFSFS--NRAETDKLIGLIRNQ  352 (354)
T ss_pred             CC-CcEEEEECCCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC--CHHHHHHHHHHHHHh
Confidence            65 56888766 4444555556679998654      1  99997  679999999999764

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=100.00  E-value=2.9e-38  Score=295.24  Aligned_cols=321  Identities=17%  Similarity=0.132  Sum_probs=255.1

Q ss_pred             CCCCCCCcccHHHHHHHHHHHh-cCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhC
Q 012647          119 NKEYLPIEGLAAFNKVTAELLF-GADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA  197 (459)
Q Consensus       119 ~~~Y~~~~g~~~lr~aia~~l~-~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~  197 (459)
                      ..+|++..|.++|+..|.++.. .-+.....+-+|++  |+|.|.+++.+  +...+++||.|++..++|......++..
T Consensus        93 alQYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiii--t~G~t~~l~~~--l~~~~N~gd~vlie~~ty~~AL~s~~a~  168 (472)
T KOG0634|consen   93 ALQYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIII--TNGNTDGLFKV--LRTLINRGDHVLIEEYTYPSALQSMEAL  168 (472)
T ss_pred             hhccccccCcHHHHHHHHHhccccccCCCCCCceEEE--ecCCchHHHHH--HHHhhcCCCceEEecccchHHHHhcccc
Confidence            4789999999999999999743 22333444458988  99999999998  4444889999999999999999999999


Q ss_pred             CCCeeeeeeecCCCCCCCHHHHHHHHHc-------CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEecc
Q 012647          198 RVPWSEYRYYDPKTVGLDFEGMIADIKA-------APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVA  270 (459)
Q Consensus       198 G~~v~~v~~~~~~~~~~d~e~l~~~i~~-------~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Dea  270 (459)
                      |+++++|+++   ..++++|.|++.+..       .+...+++.+++.+||||..++.+..++|.++|++||++||+||.
T Consensus       169 gv~~ipv~md---~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdp  245 (472)
T KOG0634|consen  169 GVKIIPVKMD---QDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDP  245 (472)
T ss_pred             CceEEecccc---CCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCc
Confidence            9999999884   457999999998865       123456777999999999999999999999999999999999999


Q ss_pred             CCCCCCCCC------CCChhHHHHHH----------hcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHH
Q 012647          271 YQGFASGSL------DNDASSVRLFA----------TRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLK  334 (459)
Q Consensus       271 y~~~~~~~~------~~~~~~~~~~~----------~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~  334 (459)
                      |.-+.++..      +....+...+.          +..++|+...||||.++ ||+|+||+.+   ++-.++++.+.  
T Consensus       246 Yy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiia-PGlRlG~it~---~~~~l~ril~~--  319 (472)
T KOG0634|consen  246 YYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIA-PGLRLGWITG---NSLFLKRILDL--  319 (472)
T ss_pred             cceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhc-CcceeEEeec---CHHHHHHHhhh--
Confidence            998887621      11111211222          23469999999999999 9999999866   88755555443  


Q ss_pred             hhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-cccccCCcceeeecCCC
Q 012647          335 RLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKD-WSFILRQIGMFSFTGLN  413 (459)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~~~~~g~f~~~~l~  413 (459)
                        ....+.+++.+.|.++...|+.-+. +.|.+.+.+.+..|..+++.+...|. +. +|.. .++.+|.+|+|+|+.++
T Consensus       320 --ae~~t~~pSg~sq~iv~a~l~~wgq-eG~~~wi~~l~~~Yt~Rrn~~l~Al~-ky-lp~~~~~~~~P~aGmFiwv~i~  394 (472)
T KOG0634|consen  320 --AEVATSGPSGFSQGIVYAMLKRWGQ-EGFLRWIQHLRSSYTERRNALLSALD-KY-LPKSVCEYHPPKAGMFIWVEIP  394 (472)
T ss_pred             --cceeecCcccccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCCCeeEEecCCcceEEEEEec
Confidence              3344567899999998777764222 22456689999999999999999998 75 4555 67889999999999763


Q ss_pred             -------------HHHHHHHHhcccEEEcCCC---------------cEEEccCChhhHHHHHHHHHHHHhh
Q 012647          414 -------------KAQSDNMTNKWHVYMTKDG---------------RISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       414 -------------~~~~~~ll~~~gI~v~~gg---------------Ris~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                                   .+.+..++.++||.+++|.               |++++..+.|+++++++++..++++
T Consensus       395 ~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~~ike  466 (472)
T KOG0634|consen  395 YINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGSVIKE  466 (472)
T ss_pred             ccccccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCCHHHHHHHHHHHHHHHHH
Confidence                         2345566677899999982               9999988999999999999999886

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=100.00  E-value=7.3e-38  Score=307.36  Aligned_cols=315  Identities=16%  Similarity=0.178  Sum_probs=246.4

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      .++|+|+.|.|    +.++ +|.+.+++.+....  ...|++..+ +++|+++++++.      +++++|++  |+|+++
T Consensus        19 ~~~i~l~~~~~----~~~~-~~~~~~a~~~~~~~--~~~y~~~~~-~~lr~~ia~~~~------~~~~~i~~--~~G~~~   82 (346)
T TIGR01141        19 KEVIKLNSNEN----PFGP-PPKAKEALRAEADK--LHRYPDPDP-AELKQALADYYG------VDPEQILL--GNGSDE   82 (346)
T ss_pred             CceEEccCCCC----CCCC-CHHHHHHHHHhHHH--hhcCCCCCH-HHHHHHHHHHhC------cChHHEEE--cCCHHH
Confidence            47999999987    4444 78899999987643  267866665 899999999975      23788999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT  242 (459)
                      +++++.  ...+.+||+|++++|+|+.|...++..|++++.+|++  .++.+|++.+++.+.+   +++++++++|||||
T Consensus        83 ~l~~~~--~~l~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~~---~~~~v~l~~p~Npt  155 (346)
T TIGR01141        83 IIELLI--RAFLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLD--EDGQLDLEDILVAIDD---KPKLVFLCSPNNPT  155 (346)
T ss_pred             HHHHHH--HHhcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEeccC--CCCCCCHHHHHHhcCC---CCCEEEEeCCCCCC
Confidence            998873  3346799999999999999998899999999999984  3467999999998754   67788889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCC
Q 012647          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (459)
Q Consensus       243 G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (459)
                      |.+++.+++++|++.|+ +|+++|+|++|.++...+   +.  . ......+++++++||||.||++|+|+||+++   +
T Consensus       156 G~~~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~---~~--~-~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~---~  225 (346)
T TIGR01141       156 GNLLSRSDIEAVLERTP-EDALVVVDEAYGEFSGEP---ST--L-PLLAEYPNLIVLRTLSKAFGLAGLRIGYAIA---N  225 (346)
T ss_pred             CCCCCHHHHHHHHHhCC-CCcEEEEECchhhhcCCc---cH--H-HHHhhCCCEEEEehhhHhhhchhhhceeeec---C
Confidence            99999999999999887 799999999999876431   11  1 1223345789999999999999999999965   7


Q ss_pred             hhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCccccc
Q 012647          323 SDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFIL  401 (459)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~  401 (459)
                      ++..    +.+.....  ..+.+.++|.++..++++.+       ++++.+++++++++.+.+.|+ ++ |    +++. 
T Consensus       226 ~~~~----~~~~~~~~--~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~l~~~L~-~~~g----~~~~-  286 (346)
T TIGR01141       226 AEII----DALNKVRA--PFNLSRLAQAAAIAALRDDD-------FIEKTVEEINAERERLYDGLK-KLPG----LEVY-  286 (346)
T ss_pred             HHHH----HHHHhccC--CCCCCHHHHHHHHHHhCCHH-------HHHHHHHHHHHHHHHHHHHHH-hcCC----CEEC-
Confidence            7744    44433322  22567778888888887653       256788999999999999998 77 4    5544 


Q ss_pred             CCcceeeecCCC---HHHHHHHHhcccEEEcCC-------C--cEEEccCChhhHHHHHHHHH
Q 012647          402 RQIGMFSFTGLN---KAQSDNMTNKWHVYMTKD-------G--RISLAGLSLAKCEYLADAII  452 (459)
Q Consensus       402 ~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~g-------g--Ris~~~~~~e~i~~~~~~l~  452 (459)
                      +.+|+|+|+.+.   .+++++|.+ +||.+.||       +  |||++  +++++++++++|+
T Consensus       287 ~~~g~~~~~~~~~~~~~~~~~L~~-~gI~v~~g~~f~~~~~~iRls~~--~~~~i~~~~~~l~  346 (346)
T TIGR01141       287 PSDANFVLIRFPRDADALFEALLE-KGIIVRDLNSYPGLPNCLRITVG--TREENDRFLAALR  346 (346)
T ss_pred             CCcCCEEEEecCCCHHHHHHHHHH-CCeEEEeCCCcCCCCCeEEEecC--CHHHHHHHHHHhC
Confidence            446778887653   344556655 69999885       2  99987  7889999998863

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=100.00  E-value=1.2e-37  Score=303.13  Aligned_cols=301  Identities=15%  Similarity=0.158  Sum_probs=224.4

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhH
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (459)
                      ++|+|+.+++    ..++.++.+.+   ..+     ..|+.  +..+||++|++++.        +++|++  |+|++++
T Consensus        21 ~~i~l~~ne~----p~~~~~~~~~~---~~~-----~~yp~--~~~~Lr~~ia~~~~--------~~~I~i--t~Gs~~a   76 (330)
T PRK05664         21 DWLDLSTGIA----PWPWPVPAIPA---DAW-----ARLPE--TDDGLEAAARAYYG--------APQLLP--VAGSQAA   76 (330)
T ss_pred             HheeecCCcC----CCCCCCcccCH---HHH-----HhCCC--ChHHHHHHHHHHhC--------CCCEEE--CcCHHHH
Confidence            6799999964    22221222222   111     23632  33899999999963        468999  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCC
Q 012647          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTG  243 (459)
Q Consensus       164 ~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG  243 (459)
                      +.++  +  .+.+||+|++++|+|+.|...++..|++++.+|++          .+++.++    ++++++++|||||||
T Consensus        77 l~~~--~--~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v~~~----------~~~~~~~----~~~~v~l~nP~NPTG  138 (330)
T PRK05664         77 IQAL--P--RLRAPGRVGVLSPCYAEHAHAWRRAGHQVRELDEA----------EVEAALD----SLDVLVVVNPNNPTG  138 (330)
T ss_pred             HHHH--H--HccCCCEEEEcCCChHHHHHHHHHcCCeEEEechh----------hHhhhhc----CCCEEEEeCCcCCCC
Confidence            9987  2  25799999999999999999999999999999862          2444443    455677899999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCCh
Q 012647          244 IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS  323 (459)
Q Consensus       244 ~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~  323 (459)
                      .+++.+++++|+++|+++|++||+||+|.++...      .++..+ ...+++++++||||.||+||+|+||+++   ++
T Consensus       139 ~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~------~s~~~~-~~~~~vi~~~SfSK~~gl~GlRiG~~v~---~~  208 (330)
T PRK05664        139 RRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQ------HSLAAC-AHRPGLIVLRSFGKFFGLAGARLGFVLA---EP  208 (330)
T ss_pred             CccCHHHHHHHHHHHHhcCCEEEEECCcccCCCc------cccccc-ccCCCEEEEeeccccccCCCcceEEEEe---CH
Confidence            9999999999999999999999999999877521      122233 2346899999999999999999999966   78


Q ss_pred             hHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCC
Q 012647          324 DLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ  403 (459)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~  403 (459)
                      +.++.+    ...... + +.+..+|.++..+|.+..+       .++.++.++++++.+.+.|+ ++|    +.   +.
T Consensus       209 ~l~~~~----~~~~~~-~-~~~~~~~~~~~~~L~~~~~-------~~~~~~~~~~~r~~l~~~L~-~~~----~~---~~  267 (330)
T PRK05664        209 ALLRAL----AELLGP-W-TVSGPTRWLAQAALADTPW-------QRRQRERLLAASQRLAALLR-RHG----LT---PA  267 (330)
T ss_pred             HHHHHH----HHhcCC-C-CCCHHHHHHHHHHHhChHH-------HHHHHHHHHHHHHHHHHHHH-HCC----Cc---cc
Confidence            844444    333222 2 4567888888888876533       35678899999999999999 876    22   33


Q ss_pred             cc--eeeecCC-CHHHHHHHHhcccEEEcCCC-----cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          404 IG--MFSFTGL-NKAQSDNMTNKWHVYMTKDG-----RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       404 ~g--~f~~~~l-~~~~~~~ll~~~gI~v~~gg-----Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      +|  +|+|+.. +.+.+.+.+.++||.+..-+     ||+++. +.++++++.++|+++.++.
T Consensus       268 ~~~~~f~~~~~~~~~~~~~~l~~~gi~v~~f~~~~~iRis~~~-~~~~~~~l~~al~~~~~~~  329 (330)
T PRK05664        268 GGCALFQWVRTEDAAALHEFLARRGILTRLFEQPASLRFGLPA-DEADWARLDQALLAYRKEA  329 (330)
T ss_pred             CCcceEEEEecCCHHHHHHHHHHCCeEEEECCCCCeEEEECCC-CHHHHHHHHHHHHHHHhhc
Confidence            44  7888865 34444444455799997642     999986 6788999999998887653

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=100.00  E-value=6.4e-37  Score=298.06  Aligned_cols=315  Identities=18%  Similarity=0.189  Sum_probs=236.9

Q ss_pred             CccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCcc
Q 012647           68 DPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVL  147 (459)
Q Consensus        68 ~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~  147 (459)
                      .+|..+..++. .+.+++++|+.|.+    ..++  + ..+....    . ..+|++..+ +++|+++++++.      +
T Consensus         3 ~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~--~-~~~~~~~----~-~~~y~~~~~-~~lr~~la~~~~------~   62 (330)
T TIGR01140         3 GNLRRAAARYG-IPPEDWLDFSTGIN----PLGP--P-VPPIPAS----A-WARYPDPEY-DELRAAAAAYYG------L   62 (330)
T ss_pred             ccHHHHHHHcC-CChhheeEccccCC----CCCC--C-hhhcchH----H-HhhCCCccH-HHHHHHHHHHhC------C
Confidence            45666666654 34568999999986    3322  2 2221111    1 266866665 999999999974      2


Q ss_pred             ccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCC
Q 012647          148 KEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP  227 (459)
Q Consensus       148 ~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~  227 (459)
                      ++++|++  |+|+++++.++.   ..+.+| +|++++|+|..|...++..|++++.++         |++.+++.++   
T Consensus        63 ~~~~i~~--t~G~~~~i~~~~---~~l~~g-~vl~~~p~y~~~~~~~~~~g~~~~~~~---------d~~~l~~~~~---  124 (330)
T TIGR01140        63 PAASVLP--VNGAQEAIYLLP---RLLAPG-RVLVLAPTYSEYARAWRAAGHEVVELP---------DLDRLPAALE---  124 (330)
T ss_pred             ChhhEEE--CCCHHHHHHHHH---HHhCCC-eEEEeCCCcHHHHHHHHHcCCEEEEeC---------CHHHHHhhcc---
Confidence            3789999  999999999863   335677 799999999999999999999988876         7888988874   


Q ss_pred             CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc
Q 012647          228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (459)
Q Consensus       228 ~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (459)
                       +++++++++||||||.+++.+++++|+++|++||++||+||+|.++.+..      ++..+.+..+++++++||||.||
T Consensus       125 -~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~------~~~~~~~~~~~~i~~~S~SK~~g  197 (330)
T TIGR01140       125 -ELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDA------SLAPQAARFPGLVVLRSLTKFFG  197 (330)
T ss_pred             -cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCcc------chhhHhccCCCEEEEEecchhhc
Confidence             34467779999999999999999999999999999999999999887531      22223334568999999999999


Q ss_pred             cCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          308 LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSL  387 (459)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  387 (459)
                      ++|+|+||+++   +++.++.+.    .... .+ +++.++|.++..++++.++       .+..+++++++++.+.+.|
T Consensus       198 ~~G~R~G~i~~---~~~~~~~l~----~~~~-~~-~~s~~~q~~~~~~l~~~~~-------~~~~~~~~~~~~~~l~~~L  261 (330)
T TIGR01140       198 LAGLRLGFVVA---HPALLARLR----EALG-PW-TVNGPARAAGRAALADTAW-------QAATRARLAAERARLAALL  261 (330)
T ss_pred             CchhhhhheeC---CHHHHHHHH----hcCC-CC-CchHHHHHHHHHHHhchHH-------HHHHHHHHHHHHHHHHHHH
Confidence            99999999966   777444433    3222 22 5567888899888886543       3466789999999999999


Q ss_pred             hhccCCCCCcccccCCcceeeecCC--CHHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHH
Q 012647          388 SAKDKSGKDWSFILRQIGMFSFTGL--NKAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAI  451 (459)
Q Consensus       388 ~~~~g~~~~~~~~~~~~g~f~~~~l--~~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l  451 (459)
                      + +++.   +++ .+.+|+|+|+.+  +.++.++|++ +||.+.||.          ||++++ ..++ +.++++|
T Consensus       262 ~-~~~~---~~~-~~~~~~f~~~~~~~~~~l~~~l~~-~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~-~~~~~~l  329 (330)
T TIGR01140       262 A-RLGG---LEV-VGGTALFLLVRTPDAAALHEALAR-RGILIRDFDNFPGLDPRYLRFALPT-DEEN-DRLEEAL  329 (330)
T ss_pred             H-hCCC---ceE-CCCCCeEEEEEcCCHHHHHHHHHH-CCEEEEECCCCCCCCCCEEEEEecC-HHHH-HHHHHhh
Confidence            9 8762   333 455789999876  3456777776 599999862          999986 4444 7777765

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=1.4e-36  Score=300.03  Aligned_cols=313  Identities=17%  Similarity=0.198  Sum_probs=234.2

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeec-ccch
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG-LSGT  161 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t-~ggt  161 (459)
                      .++|+|+.|++    ..++ +|.+.+++.+.+..  ...|++.. .+++|+++++++..      ++++|++  + +|++
T Consensus        34 ~~~i~l~~~~~----~~~~-~~~~~~~~~~~~~~--~~~y~~~~-~~~lr~~ia~~~~~------~~~~i~~--~~~Ga~   97 (361)
T PRK00950         34 ESIIKLGSNEN----PLGP-SPKAVEAIEKELSK--IHRYPEPD-APELREALSKYTGV------PVENIIV--GGDGMD   97 (361)
T ss_pred             cceEEccCCCC----CCCC-CHHHHHHHHHHHHh--hcCCCCCC-HHHHHHHHHHHhCC------CHHHEEE--eCCCHH
Confidence            37899999976    3333 77888888877653  25675544 49999999999732      3677766  4 6778


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      ++++++..  ..+.+||+|++++|+|..|...++..|++++.+|.  ++++++|++.+++.+++   +++++++++||||
T Consensus        98 ~~i~~~~~--~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~l~~~~~~---~~~~v~~~~p~np  170 (361)
T PRK00950         98 EVIDTLMR--TFIDPGDEVIIPTPTFSYYEISAKAHGAKPVYAKR--EEDFSLDVDSVLNAITE---KTKVIFLCTPNNP  170 (361)
T ss_pred             HHHHHHHH--HhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeec--CCCCCcCHHHHHHHhcc---CCCEEEEeCCCCC
Confidence            88888733  33579999999999999999999999999999986  45678999999998865   6677778999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+++.+++.+|   |+++|+++|+||+|.++...       ....+....+++++++||||.||++|+|+||+++   
T Consensus       171 tG~~~~~~~l~~l---~~~~~~~li~De~y~~~~~~-------~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~---  237 (361)
T PRK00950        171 TGNLIPEEDIRKI---LESTDALVFVDEAYVEFAEY-------DYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFV---  237 (361)
T ss_pred             CCCCcCHHHHHHH---HHHCCcEEEEECchhhhCcc-------chHHHHHhcCCEEEEEeehHhhcCchhhcchhcC---
Confidence            9999888876555   56789999999999887621       1222334456899999999999999999999965   


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  401 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  401 (459)
                      +++.++.    +...... + +.+.++|.++..+|.+.++       +++.+++++++++.+.+.|.        +.+. 
T Consensus       238 ~~~~~~~----~~~~~~~-~-~~~~~~~~~a~~~l~~~~~-------~~~~~~~~~~~r~~l~~~l~--------~~~~-  295 (361)
T PRK00950        238 PEWLIDY----YMRAKTP-F-SLTRLSQAAAIAALSDKEY-------IEKSIEHGIKSREYLYNELP--------FKVY-  295 (361)
T ss_pred             CHHHHHH----HHHhcCC-C-CCCHHHHHHHHHHhcCHHH-------HHHHHHHHHHHHHHHHhhcC--------eeEC-
Confidence            7774443    3333222 2 4667788888888876433       45667778888888776664        2333 


Q ss_pred             CCcceeeecCC---C-HHHHHHHHhcccEEEcCC------C----cEEEccCChhhHHHHHHHHHHHHh
Q 012647          402 RQIGMFSFTGL---N-KAQSDNMTNKWHVYMTKD------G----RISLAGLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       402 ~~~g~f~~~~l---~-~~~~~~ll~~~gI~v~~g------g----Ris~~~~~~e~i~~~~~~l~~~~~  456 (459)
                      +.+++|+|+.+   + .++++.|.+ +||.+.+|      +    |||++  +.+++++++++|+++++
T Consensus       296 ~~~~~~i~~~~~~~~~~~~~~~l~~-~gv~v~~~~~f~~~~~~~lRis~~--~~~~~~~l~~~L~~il~  361 (361)
T PRK00950        296 PSEANFVLVDVTPMTAKEFCEELLK-RGVIVRDCTSFRGLGDYYIRVSIG--TFEENERFLEILKEIVE  361 (361)
T ss_pred             CCcceEEEEECCCCCHHHHHHHHHH-CCEEEeeCCccCCCCCCeEEEECC--CHHHHHHHHHHHHHHhC
Confidence            45678888754   3 355667766 59999875      1    99988  66899999999998763

>PRK08354 putative aminotransferase; Provisional

Probab=100.00  E-value=2.1e-36  Score=291.93  Aligned_cols=292  Identities=14%  Similarity=0.179  Sum_probs=211.1

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      .++|+|+.|++    ..+  |+.+.+++.+.++.  ...|+.   ...+|+++++++.         ++|++  |+|+++
T Consensus         8 ~~~i~l~~~~n----p~~--p~~~~~a~~~~~~~--~~~yp~---~~~l~~~ia~~~~---------~~I~v--t~G~~~   65 (311)
T PRK08354          8 EGLIDFSASVN----PYP--PEWLDEMFERAKEI--SGRYTY---YEWLEEEFSKLFG---------EPIVI--TAGITE   65 (311)
T ss_pred             cceeEecCCCC----CCC--CHHHHHHHHHHHHH--hhcCCC---hHHHHHHHHHHHC---------CCEEE--CCCHHH
Confidence            46899999864    232  57888888877653  256743   4679999999863         46988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT  242 (459)
                      ++.++.   ..+.+||+|++++|+|..|...++..|++++.++        +|++.+++.+++    +++++++||||||
T Consensus        66 al~~~~---~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~--------~d~~~l~~~~~~----~~~vi~~~P~NPT  130 (311)
T PRK08354         66 ALYLIG---ILALRDRKVIIPRHTYGEYERVARFFAARIIKGP--------NDPEKLEELVER----NSVVFFCNPNNPD  130 (311)
T ss_pred             HHHHHH---HhhCCCCeEEEeCCCcHHHHHHHHHcCCEEeecC--------CCHHHHHHhhcC----CCEEEEecCCCCC
Confidence            999873   3345999999999999999999999999987653        578888887753    3467779999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCC
Q 012647          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (459)
Q Consensus       243 G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (459)
                      |.+++.+++++|+++|+++|+++|+||+|.+|.+++.     ..     ..+++++++||||.|++||+|+||+++   .
T Consensus       131 G~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~-----~~-----~~~~vi~~~S~SK~~~l~GlRiG~~v~---~  197 (311)
T PRK08354        131 GKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPE-----SP-----EGENIIKLRTFTKSYGLPGIRVGYVKG---F  197 (311)
T ss_pred             CCccCHHHHHHHHHHhhhcCcEEEEeCcchhcccccc-----cc-----CCCcEEEEeccHhhcCCccceeeeeee---h
Confidence            9999999999999999999999999999999987531     11     246899999999999999999999954   2


Q ss_pred             hhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC
Q 012647          323 SDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR  402 (459)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~  402 (459)
                      .       +.+...... + ..+..++.++..++++. +     +++++.++.+++.++.+.+.+           ..++
T Consensus       198 ~-------~~l~~~~~~-~-~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~l~~~l-----------~~~~  251 (311)
T PRK08354        198 E-------EAFRSVRMP-W-SIGSTGYAFLEFLIEDD-F-----EHLRKTMPLIWREKERFEKAL-----------YVKS  251 (311)
T ss_pred             H-------HHHHHcCCC-c-cCCHHHHHHHHHHHHhH-H-----HHHHHHHHHHHHHHHHHHHhc-----------CCCC
Confidence            2       223332222 2 34445566666665532 1     223344444444444433222           2346


Q ss_pred             CcceeeecCC-C-HHHHHHHHhcccEEEcCCC--------cEEEccCChhhHHHHHHHHHHH
Q 012647          403 QIGMFSFTGL-N-KAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDS  454 (459)
Q Consensus       403 ~~g~f~~~~l-~-~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e~i~~~~~~l~~~  454 (459)
                      +++||++ .+ + .++++.+. ++||.+.||.        ||+++  ..++.++++++|+++
T Consensus       252 ~~~~~~~-~~~~~~~~~~~l~-~~gv~v~~g~~f~~~~~iRi~~~--~~~~~~~l~~al~~~  309 (311)
T PRK08354        252 DANFFIK-DVGDAEKFVEFLK-RNGILVRDCTSFGLPGYIRFSVR--DREENEKLIRALREW  309 (311)
T ss_pred             CCcEEEE-ECCCHHHHHHHHH-HCCeEEEecccCCCCCeEEEEeC--CHHHHHHHHHHHHHh
Confidence            7776664 44 3 34566655 4699999983        99998  456778888888765

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=100.00  E-value=7.9e-33  Score=277.90  Aligned_cols=342  Identities=11%  Similarity=0.044  Sum_probs=241.4

Q ss_pred             CCCCceeecccccC-CCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           81 TDEKKLNLGVGAYR-TEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        81 ~~~~~i~l~~g~~~-~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      .+.++++|++|+|. |... |.....+.+++.+++..+. ..|++..|.++||+++++++..        +++++  |+|
T Consensus        34 ~g~~~~~L~~g~p~~D~~t-ds~t~a~~~a~~~a~~~g~-~~Y~~~~g~~~Lreaia~~~~~--------~~vv~--t~g  101 (460)
T PRK13238         34 AGYNPFLLKSEDVFIDLLT-DSGTGAMSDRQWAAMMRGD-EAYAGSRSYYRLEDAVKDIFGY--------PYTIP--THQ  101 (460)
T ss_pred             cCCCEEeCCCCCCCCCCCC-CCCchhhhHHHHHHHHhCC-cccCCCCCHHHHHHHHHHHhCC--------CcEEE--CCC
Confidence            45699999999983 2211 1112357777777775554 7899999999999999999743        46888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecC------CCC--CCCHHHHHHHHHcCC-CCc
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP------KTV--GLDFEGMIADIKAAP-GGS  230 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~------~~~--~~d~e~l~~~i~~~~-~~~  230 (459)
                      |++++.++  +...+.||| |++++|.|..|...++..|++++.+|+++.      +.|  .+|++.|++.+++.. +++
T Consensus       102 gt~A~~~~--~~all~pGD-Vii~~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~t  178 (460)
T PRK13238        102 GRAAEQIL--FPVLIKKGD-VVPSNYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENV  178 (460)
T ss_pred             HHHHHHHH--HHHhCCCCC-EEccCCcccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCCCce
Confidence            99999998  445588999 999999999999999999999999998531      234  499999999998532 368


Q ss_pred             EEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCCeeEEeccCCC--CCCCCC---CCChhHHHHHHhcCCeEEEEEcCCc
Q 012647          231 FILLHGCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQG--FASGSL---DNDASSVRLFATRGMELLVAQSYSK  304 (459)
Q Consensus       231 ~~ii~~~p~NPTG-~~~s~~~l~~i~~l~~~~~~~ii~Deay~~--~~~~~~---~~~~~~~~~~~~~~~~~i~~~S~SK  304 (459)
                      +++++++|||||| .+++.+++++|.++|++||+++|+|+++..  ..+...   .....++..+      +..++|++|
T Consensus       179 k~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i------~~~~~s~~D  252 (460)
T PRK13238        179 PFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEI------AREMFSYAD  252 (460)
T ss_pred             eEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHH------hhhhcccCc
Confidence            8999999999997 999999999999999999999999997522  222100   0011122221      334467888


Q ss_pred             CcccCCCCcc-----eEEEEeCChhHHHHHHHHHHhhccc-cccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012647          305 NLGLYAERIG-----AMNVVCSSSDLAARVKSQLKRLARP-MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  378 (459)
Q Consensus       305 ~~~~~G~RiG-----~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  378 (459)
                      .+.++|||+|     +++ ..+++++.+++.......... ++.+.+...|.+++..|.+. ..   .++++.    ..+
T Consensus       253 ~~~~Sg~K~g~~~~GG~i-~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~-~~---~~~~~~----~~~  323 (460)
T PRK13238        253 GLTMSAKKDAMVNIGGLL-CFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEG-MD---EDYLAY----RIG  323 (460)
T ss_pred             EEEEecccCCCCcceeEE-EcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHh-hC---hHHHHH----HHH
Confidence            8888888874     332 233456444443221111112 23333444456655444321 11   011122    233


Q ss_pred             HHHHHHHHHhhccCCCCCcccccCCcceeeecCC-------------CHHHHHHHHhcccEEEcCCC-------------
Q 012647          379 VRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-------------NKAQSDNMTNKWHVYMTKDG-------------  432 (459)
Q Consensus       379 ~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-------------~~~~~~~ll~~~gI~v~~gg-------------  432 (459)
                      ++++|.+.|. +.|    ++++.|.||+|+|+++             +.+++.+|+++.||.+.|+|             
T Consensus       324 ~~~~l~~~L~-~~G----~~~~~p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~  398 (460)
T PRK13238        324 QVEYLGEGLE-EAG----VPIQTPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQ  398 (460)
T ss_pred             HHHHHHHHHH-HCC----CCeEccCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccc
Confidence            5799999999 887    6888999999999854             24578899999999998863             


Q ss_pred             --------cEEEcc--CChhhHHHHHHHHHHHHhh
Q 012647          433 --------RISLAG--LSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       433 --------Ris~~~--~~~e~i~~~~~~l~~~~~~  457 (459)
                              |+++.-  ++.+++++++++|+++.++
T Consensus       399 ~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~  433 (460)
T PRK13238        399 LPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKEN  433 (460)
T ss_pred             cCCccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence                    888764  4889999999999988753

>cd00609 AAT_like Aspartate aminotransferase family

Probab=100.00  E-value=2.8e-32  Score=267.85  Aligned_cols=332  Identities=20%  Similarity=0.215  Sum_probs=249.5

Q ss_pred             eeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHH
Q 012647           86 LNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR  165 (459)
Q Consensus        86 i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~  165 (459)
                      |||+.|.|    .+.+ ++.+.+++.+.........|.+..|..++++.+++++...++....++++++  ++|+++++.
T Consensus         1 ~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~--~~~~t~a~~   73 (350)
T cd00609           1 IDLSIGEP----DFPP-PPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVV--TNGAQEALS   73 (350)
T ss_pred             CCCCCCCC----CCCC-CHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEE--ecCcHHHHH
Confidence            57888877    3333 4445554443222223467888999999999999999887665555778988  999999999


Q ss_pred             HHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCH--HHHHHHHHcCCCCcEEEEeCCCCCCCC
Q 012647          166 LAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF--EGMIADIKAAPGGSFILLHGCAHNPTG  243 (459)
Q Consensus       166 l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~--e~l~~~i~~~~~~~~~ii~~~p~NPTG  243 (459)
                      .+..  ....+||+|++++|+|.++...++..|.+++.+|+++  ++..+.  +.++..+.   ++++++++++++||||
T Consensus        74 ~~~~--~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~---~~~~~v~i~~~~~~tG  146 (350)
T cd00609          74 LLLR--ALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDE--EGGFLLDLELLEAAKT---PKTKLLYLNNPNNPTG  146 (350)
T ss_pred             HHHH--HhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEEeccc--ccCCccCHHHHHhhcC---ccceEEEEECCCCCCC
Confidence            8833  3356899999999999999999999999999999853  333443  55555443   3677888888999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCCh
Q 012647          244 IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS  323 (459)
Q Consensus       244 ~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~  323 (459)
                      .+++.+++++|+++|+++|+++|+|++|..+.+.+....   ........+.+++++|++|.++++|.|+||+++   ++
T Consensus       147 ~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~---~~  220 (350)
T cd00609         147 AVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPP---ALALLDAYERVIVLRSFSKTFGLPGLRIGYLIA---PP  220 (350)
T ss_pred             cccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccc---cccCcCccCcEEEEeecccccCCcccceEEEec---CH
Confidence            999999999999999999999999999998876532111   001123445789999999999999999999955   55


Q ss_pred             -hHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC
Q 012647          324 -DLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR  402 (459)
Q Consensus       324 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~  402 (459)
                       ++.+.+..    .....+.+++..++.++..+|....      +.+++.+++++++++++.+.|+ +.+.   +....+
T Consensus       221 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~-~~~~---~~~~~~  286 (350)
T cd00609         221 EELLERLKK----LLPYTTSGPSTLSQAAAAAALDDGE------EHLEELRERYRRRRDALLEALK-ELGP---LVVVKP  286 (350)
T ss_pred             HHHHHHHHH----HHHhcccCCChHHHHHHHHHHhCcH------HHHHHHHHHHHHHHHHHHHHHH-hcCC---ccccCC
Confidence             64444433    3333345777888888877777542      3367888999999999999999 8753   222456


Q ss_pred             CcceeeecCCC----HHHHHHHHhcccEEEcCC------C----cEEEccCChhhHHHHHHHHH
Q 012647          403 QIGMFSFTGLN----KAQSDNMTNKWHVYMTKD------G----RISLAGLSLAKCEYLADAII  452 (459)
Q Consensus       403 ~~g~f~~~~l~----~~~~~~ll~~~gI~v~~g------g----Ris~~~~~~e~i~~~~~~l~  452 (459)
                      .+|+++|+.+.    .+.+.++++++||.+.++      +    ||+++.. ++++++++++|+
T Consensus       287 ~~g~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~-~~~i~~~~~al~  349 (350)
T cd00609         287 SGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP-EEELEEALERLA  349 (350)
T ss_pred             CccEEEEEecCCCChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC-HHHHHHHHHHhh
Confidence            77889888653    456777888789999886      3    9999985 999999999986

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.4e-30  Score=232.29  Aligned_cols=354  Identities=16%  Similarity=0.118  Sum_probs=251.0

Q ss_pred             cchhHHHhh-hCCCCCceeecccccCCCCCCccCcHHHHHHH----HHHhhcC----CCCCCCCCcccHHHHHHHHHHHh
Q 012647           70 ILGVSEAFK-ADTDEKKLNLGVGAYRTEELQPYVLDVVKKAE----NLMLERG----ENKEYLPIEGLAAFNKVTAELLF  140 (459)
Q Consensus        70 i~~~~~~~~-~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~----~~~~~~~----~~~~Y~~~~g~~~lr~aia~~l~  140 (459)
                      |..+++.+. .-..++.|.|+.|.|    ..   -|++.+..    .+.+.++    ...+|...+|...|.++++.+++
T Consensus        16 i~~lMdDl~d~Lrt~g~imLggGNP----a~---iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~   88 (417)
T COG3977          16 ITQLMDDLNDGLRTPGAIMLGGGNP----AR---IPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLR   88 (417)
T ss_pred             HHHHHHHHHhhccCCCceeeCCCCc----cc---ChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHH
Confidence            455554442 112467999999987    32   34454444    4444332    23689999999999999999999


Q ss_pred             cCCCCccccCceEEeecccchhHHHHHHHHHHHhC-CCC--EEEE-cCCCCcchHHHhh------hCCCCeeeeeeecCC
Q 012647          141 GADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF-PGA--KVLI-SSPTWGNHKNIFN------DARVPWSEYRYYDPK  210 (459)
Q Consensus       141 ~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~-~gd--~Vlv-~~p~y~~~~~~~~------~~G~~v~~v~~~~~~  210 (459)
                      +.+|..+++++|.+  |+|++.+..-++.+++... .|+  +|+. ..|.|.+|..+.-      ++.-++..+|-. .-
T Consensus        89 ~~ygwnit~~NIal--TnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~fVs~kP~iel~~~g-~F  165 (417)
T COG3977          89 REYGWNITAQNIAL--TNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDLFVSAKPNIELLPAG-QF  165 (417)
T ss_pred             HHhCCCCccceeee--cCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccceeeccCCccccccc-ce
Confidence            99999999999999  9999999888755554333 443  4444 4688888865422      111112222210 11


Q ss_pred             CCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCC-CChhHHHHH
Q 012647          211 TVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD-NDASSVRLF  289 (459)
Q Consensus       211 ~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~-~~~~~~~~~  289 (459)
                      -+.+|++.+.-  .+   .+-+++++-|.||||.+++.+++.+|..+|++||+.+|+|.+|.---.+ .. .|..   . 
T Consensus       166 KY~vDF~~l~i--~e---~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~-iifsd~~---~-  235 (417)
T COG3977         166 KYHVDFEHLHI--GE---STGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPG-IIFSDAT---P-  235 (417)
T ss_pred             eeccCHHHccc--cc---ccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCc-eeccccc---c-
Confidence            35678888753  33   6678888999999999999999999999999999999999998643211 10 0110   0 


Q ss_pred             HhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012647          290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEM  369 (459)
Q Consensus       290 ~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~  369 (459)
                       --.++++.|.|+||. |+||.|+|.+++   +++    +++.+..........+...++.+++.+++.+++.+.-   -
T Consensus       236 -~w~~NiilC~SLSK~-GLPG~R~GIiIa---ne~----viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rls---e  303 (417)
T COG3977         236 -LWNENIILCMSLSKL-GLPGSRCGIIIA---NEK----VIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLS---E  303 (417)
T ss_pred             -cCCCCEEEEeehhhc-CCCCcceeEEEc---cHH----HHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHH---H
Confidence             113689999999996 789999999877   887    6666665555555678888999999999988875321   1


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeec-----CCCHHHHHHHHhcccEEEcCCC------------
Q 012647          370 EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT-----GLNKAQSDNMTNKWHVYMTKDG------------  432 (459)
Q Consensus       370 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~-----~l~~~~~~~ll~~~gI~v~~gg------------  432 (459)
                      +-++-.|+++.+...+.|++.++- ..|..+.|+|.+|+|+     .++.+.+...+++.||.++||.            
T Consensus       304 qVIrPFY~~~~q~~~~~l~~~lp~-~~~~iHkpEGAIFlWLWf~dLPItt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH  382 (417)
T COG3977         304 QVIRPFYRNRVQTTIAILRRYLPE-YRCLIHKPEGAIFLWLWFKDLPITTEELYQRLKARGVLMVPGHYFFPGLDKEWPH  382 (417)
T ss_pred             HhhhHHHHHHHHHHHHHHHHhcCc-cceeeecCCcceeehhhhccCCCCHHHHHHHHHhCeEEEecccccCCCCCCCCCC
Confidence            345667777777777777733432 2267789999999987     2355554444455699999982            


Q ss_pred             -----cEEEccCChhhHHHHHHHHHHHHhh
Q 012647          433 -----RISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       433 -----Ris~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                           |+|+.. ++++|+.++.+|.+.+++
T Consensus       383 ~hqC~Rmn~~~-~~~~ie~Gva~lae~ve~  411 (417)
T COG3977         383 THQCMRMNYVP-EPEKIEKGVAILAEEVER  411 (417)
T ss_pred             ccceEEEecCC-CHHHHHHHHHHHHHHHHH
Confidence                 999998 899999999999998875

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=99.98  E-value=1e-29  Score=234.35  Aligned_cols=335  Identities=17%  Similarity=0.138  Sum_probs=254.5

Q ss_pred             cHHHHHHHHHHhhc--CCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEE
Q 012647          103 LDVVKKAENLMLER--GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV  180 (459)
Q Consensus       103 ~~~v~~a~~~~~~~--~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~V  180 (459)
                      |..+++.....+..  +....|+...|++-+|+.+|+|+.+++|.+.+|++|.+  |.|++.|+..+..++- -.+.+.|
T Consensus        88 p~Dai~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~L--T~GAS~ai~~il~l~~-~~~~~Gv  164 (475)
T KOG0258|consen   88 PTDAIKRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFL--TTGASPAIRSILSLLI-AGKKTGV  164 (475)
T ss_pred             CHHHHHHHHHHHHhcCCcccccccccCChhHHHHHHHHHHhccCCCCCHHHeee--cCCCcHHHHHHHHHHh-cCCCCce
Confidence            34444444455533  24467999999999999999999999998899999999  9999999999855541 2378999


Q ss_pred             EEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC--CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 012647          181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA--PGGSFILLHGCAHNPTGIDPTPEQWEKIADVI  258 (459)
Q Consensus       181 lv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~--~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~  258 (459)
                      ++|-|.|+-|...+..+|+..+.+-++++.+|.+|.++|+..++++  .-+.+++++-||.||||.++|++-+++|+++|
T Consensus       165 liPiPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa  244 (475)
T KOG0258|consen  165 LIPIPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFA  244 (475)
T ss_pred             EeecCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHH
Confidence            9999999999999999999999998988899999999999888763  23456777789999999999999999999999


Q ss_pred             HhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-c---C---CeEEEEEcCCcCc-ccCCCCcceEEEEeCChhHHHHHH
Q 012647          259 QEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-R---G---MELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARVK  330 (459)
Q Consensus       259 ~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-~---~---~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~  330 (459)
                      .+++++++.||+||+-.|.+ +....+.+..+- .   .   .-++.++|.||.+ |=.|.|=||+-++..+++..+.+.
T Consensus       245 ~~~~l~llaDEVYQ~Nvy~~-~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~  323 (475)
T KOG0258|consen  245 AEEGLVLLADEVYQDNVYTT-GSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIK  323 (475)
T ss_pred             HHcCeEEechHHHHhhccCC-CcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHH
Confidence            99999999999999999864 223444433321 1   1   2456778889986 557899999987777777444433


Q ss_pred             HHHHhhccccccCCchHHHHHHHHHhCCh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcce
Q 012647          331 SQLKRLARPMYSNPPVHGARIVANVVGNP----ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGM  406 (459)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~  406 (459)
                      +....     -.+++..+|..+-...+-+    .-++.|..+-+.+.+.++++...+.+.++ ++.   ++++.+++|.|
T Consensus       324 Kl~si-----~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~n-s~~---gi~cn~~qGAM  394 (475)
T KOG0258|consen  324 KLASI-----KLCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFN-SLE---GISCNPVQGAM  394 (475)
T ss_pred             HHHhh-----hhcCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHh-hcC---ceeeccCccce
Confidence            32221     2255566666665555422    12345667778888999999999999999 773   27899999999


Q ss_pred             eeecCC---------------C-HHH-HHHHHhcccEEEcCCC-----------cEEEccCChhhHHHHHHHHHHH
Q 012647          407 FSFTGL---------------N-KAQ-SDNMTNKWHVYMTKDG-----------RISLAGLSLAKCEYLADAIIDS  454 (459)
Q Consensus       407 f~~~~l---------------~-~~~-~~~ll~~~gI~v~~gg-----------Ris~~~~~~e~i~~~~~~l~~~  454 (459)
                      |+|..+               . ++| +.+||+..||.++||.           |.+|-...   + ..+++++++
T Consensus       395 Y~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiLp~~---~-~~i~~~~~f  466 (475)
T KOG0258|consen  395 YLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTILPPG---L-EIIEKFKKF  466 (475)
T ss_pred             eecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEeecCch---h-HHHHHHHHH
Confidence            999743               2 234 6799999999999982           88876422   3 555555444

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.97  E-value=3.7e-29  Score=247.90  Aligned_cols=340  Identities=12%  Similarity=0.106  Sum_probs=233.9

Q ss_pred             CCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        81 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      .+-+++.|..|.++-+...+.....+.+++..++..+. ..|++..|.++|++++++++..        +++++  |+||
T Consensus         9 ~g~n~~~l~~~~v~iDlltds~t~ams~~~~~a~~~gd-~~Y~~~~g~~~Leeaia~~~g~--------~~vv~--t~~G   77 (431)
T cd00617           9 AGYNVFLLRSEDVYIDLLTDSGTGAMSDYQWAAMMLGD-EAYAGSKSFYDLEDAVQDLFGF--------KHIIP--THQG   77 (431)
T ss_pred             cCCCEEeCCCCCcCCCCCCCCCcHHHHHHHHHHHHhCC-CccCCCCCHHHHHHHHHHHHCC--------CeEEE--cCCH
Confidence            35688999999873222222112455555555554444 5699999999999999999743        56888  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCC--------CCCCCHHHHHHHHHcC-CCCcE
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK--------TVGLDFEGMIADIKAA-PGGSF  231 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~--------~~~~d~e~l~~~i~~~-~~~~~  231 (459)
                      ++|+.++  +...+.|||.| +++|+|..+...+..+|++++.++++++.        .+.+|++.|++.+++. .++++
T Consensus        78 t~Al~la--~~al~~pGD~V-~~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~  154 (431)
T cd00617          78 RGAENIL--FSILLKPGRTV-PSNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIP  154 (431)
T ss_pred             HHHHHHH--HHHhCCCCCEE-ccCCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCcc
Confidence            9999998  44557899987 68999999999999999999999996432        2449999999999863 23477


Q ss_pred             EEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCC--CC-----CCCCCChhHHHHHHhcCCeEEEEEcCC
Q 012647          232 ILLHGCAHNPT-GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGF--AS-----GSLDNDASSVRLFATRGMELLVAQSYS  303 (459)
Q Consensus       232 ~ii~~~p~NPT-G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~--~~-----~~~~~~~~~~~~~~~~~~~~i~~~S~S  303 (459)
                      ++++++||||+ |.+++.+++++|.++|++||++||+|++....  .+     ++  ....++..      .++.++|++
T Consensus       155 ~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g--~~~~si~e------i~~e~~s~s  226 (431)
T cd00617         155 YIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEG--YRDKSIAE------IAREMFSYA  226 (431)
T ss_pred             EEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhccccc--ccCCCHHH------HHHHhhccC
Confidence            88889999998 99999999999999999999999999993211  11     10  01112221      234556888


Q ss_pred             cCcccCCCC-----cc-eEEEEeCChhHHHHHHHHHHhhcccc-ccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012647          304 KNLGLYAER-----IG-AMNVVCSSSDLAARVKSQLKRLARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI  376 (459)
Q Consensus       304 K~~~~~G~R-----iG-~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~  376 (459)
                      |.+.+.|+|     +| |++  .+++++.+++........... +.+.+.....+++..|.+..      + .+...+++
T Consensus       227 d~~~mS~~K~~~~~~GG~i~--~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~------~-~~~l~~~~  297 (431)
T cd00617         227 DGCTMSAKKDGLVNIGGFLA--LRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAV------E-EDYLRHRV  297 (431)
T ss_pred             CEEEEEeecCCCCccceEEE--eCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhcc------c-HHHHHHHH
Confidence            888888887     45 663  444566555443221111111 11222222222232343210      0 12334444


Q ss_pred             HHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC-------------CHHHHHHHHhcccEEEcCC-----------C
Q 012647          377 KNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-------------NKAQSDNMTNKWHVYMTKD-----------G  432 (459)
Q Consensus       377 ~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-------------~~~~~~~ll~~~gI~v~~g-----------g  432 (459)
                      + ++++|.+.|. +.|    |.+..|.||+++|++.             +.+++.+|+++.||.+..-           |
T Consensus       298 ~-~r~~l~~~L~-~~G----~~v~~P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~  371 (431)
T cd00617         298 E-QVRYLGDRLD-EAG----VPIVEPAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTG  371 (431)
T ss_pred             H-HHHHHHHHHH-HCC----CCccCCCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCC
Confidence            4 5599999999 888    6888999999999854             2355778999899986541           1


Q ss_pred             ----------cEEEc--cCChhhHHHHHHHHHHHHhh
Q 012647          433 ----------RISLA--GLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       433 ----------Ris~~--~~~~e~i~~~~~~l~~~~~~  457 (459)
                                |+++.  .+|.+++++++++|..+.++
T Consensus       372 ~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~  408 (431)
T cd00617         372 ENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYER  408 (431)
T ss_pred             cccCCccceeEEeccccccCHHHHHHHHHHHHHHHhh
Confidence                      88765  34889999999999998875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.97  E-value=5.4e-29  Score=248.99  Aligned_cols=328  Identities=13%  Similarity=0.096  Sum_probs=219.7

Q ss_pred             ccCCCCCCccCcHHHHHHHHHHhhcCC-CCCCCCC-------cccHHHHHHHHHHHhcCCCCccccCceEEeecccchhH
Q 012647           92 AYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPI-------EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (459)
Q Consensus        92 ~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~~-------~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (459)
                      .|+|..+..++|+.+.+++.+.+.... ...+.+.       ..++++|+.++++++..     ++++|++  |+|+|++
T Consensus        18 iyld~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-----~~~~i~~--t~g~t~~   90 (398)
T TIGR03392        18 VYLDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAP-----DAENIVW--TRGTTES   90 (398)
T ss_pred             EEeeCccccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCC-----CCCeEEE--eCChHHH
Confidence            344444555568999999988874311 1122221       23567999999997653     2678999  9999999


Q ss_pred             HHHHHHHHH--HhCCCCEEEEcCCCCcc----hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCC
Q 012647          164 LRLAAALIE--RYFPGAKVLISSPTWGN----HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (459)
Q Consensus       164 ~~l~~~~~~--~~~~gd~Vlv~~p~y~~----~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~  237 (459)
                      +++++..+.  .+.+||+|++++|.|+.    +...++..|++++.+|++  .++.+|++.+++++++   +++++++++
T Consensus        91 l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~~~~~l~~~i~~---~t~lv~i~~  165 (398)
T TIGR03392        91 INLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIG--ADLLPDIRQLPELLTP---RTRILALGQ  165 (398)
T ss_pred             HHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecC--CCCCcCHHHHHHHhcc---CceEEEEEC
Confidence            999844331  14689999999999865    455678899999999984  3567899999999976   788999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEE
Q 012647          238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (459)
Q Consensus       238 p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (459)
                      ||||||.+.   ++++|+++|+++|+++++|++|..... ..     .+    ...+.++++.|++|.+|++|  +||++
T Consensus       166 ~~n~tG~~~---~~~~i~~~~~~~~~~~ivD~a~~~~~~-~~-----~~----~~~~~d~~~~s~~K~~gp~G--~G~l~  230 (398)
T TIGR03392       166 MSNVTGGCP---DLARAITLAHQYGAVVVVDGAQGVVHG-PP-----DV----QALDIDFYAFSGHKLYGPTG--IGVLY  230 (398)
T ss_pred             ccccccccC---CHHHHHHHHHHcCCEEEEEhhhhcCCC-CC-----Ch----hhcCCCEEEEecccccCCCc--eEEEE
Confidence            999999994   577899999999999999999754322 11     11    12234678889999999777  89997


Q ss_pred             EEeCChhHHHHHHHHHHhh-----------------ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012647          318 VVCSSSDLAARVKSQLKRL-----------------ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR  380 (459)
Q Consensus       318 ~v~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~  380 (459)
                      +   +++.++.+.......                 .+...++++..+..++...++   +..  ...+++++++.++.+
T Consensus       231 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~---~l~--~~g~~~i~~~~~~l~  302 (398)
T TIGR03392       231 G---KTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALE---WLT--DIDIAAAEAWSVSLA  302 (398)
T ss_pred             E---cHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHH---HHH--HhCHHHHHHHHHHHH
Confidence            6   677444332110000                 000111233323222222221   111  112456778888899


Q ss_pred             HHHHHHHhhccCCCCCccccc-CCcceeee--cCCCHHHHHHHHhcccEEEcCC--------------C--cEEEccC-C
Q 012647          381 QKLFDSLSAKDKSGKDWSFIL-RQIGMFSF--TGLNKAQSDNMTNKWHVYMTKD--------------G--RISLAGL-S  440 (459)
Q Consensus       381 ~~l~~~L~~~~g~~~~~~~~~-~~~g~f~~--~~l~~~~~~~ll~~~gI~v~~g--------------g--Ris~~~~-~  440 (459)
                      +++.+.|+ +++   ++.... +..+++.|  .+++.+.+...++++||.+++|              |  |||++.. |
T Consensus       303 ~~l~~~l~-~l~---g~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t  378 (398)
T TIGR03392       303 DLAEERLA-QLP---GFRSFRCPGSSLLAFDFAGVHHSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNT  378 (398)
T ss_pred             HHHHHHHh-cCC---CeEEeCCCCCcEEEEEeCCcCHHHHHHHHHhCCEEEecCccchHHHHHHhCCCCEEEEEeeccCC
Confidence            99999998 762   144443 33344433  2455555444455679998753              3  9998765 8


Q ss_pred             hhhHHHHHHHHHHHHhhc
Q 012647          441 LAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       441 ~e~i~~~~~~l~~~~~~~  458 (459)
                      ++|+++++++|+++++++
T Consensus       379 ~~ei~~l~~~l~~~~~~~  396 (398)
T TIGR03392       379 QQDVDALVDAVGAALELL  396 (398)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            899999999999998875

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.97  E-value=4e-29  Score=250.24  Aligned_cols=327  Identities=15%  Similarity=0.123  Sum_probs=221.7

Q ss_pred             ccCCCCCCccCcHHHHHHHHHHhhcCCCC--CCC------CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhH
Q 012647           92 AYRTEELQPYVLDVVKKAENLMLERGENK--EYL------PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (459)
Q Consensus        92 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~~--~Y~------~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (459)
                      .|+|..+..+.++.+.+++.+.+......  ...      ....++++|+.++++++..     ++++|++  |+|+|++
T Consensus        21 ~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-----~~~~i~~--~~~~t~~   93 (401)
T PRK10874         21 VYLDSAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAP-----DAKNIVW--TRGTTES   93 (401)
T ss_pred             EEEeCCcccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCC-----CCCEEEE--ECCHHHH
Confidence            34455555566899999999888532100  000      0223678999999997652     2788999  9999999


Q ss_pred             HHHHHHHHH--HhCCCCEEEEcCCCCcc----hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCC
Q 012647          164 LRLAAALIE--RYFPGAKVLISSPTWGN----HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (459)
Q Consensus       164 ~~l~~~~~~--~~~~gd~Vlv~~p~y~~----~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~  237 (459)
                      +++++..+.  .+.+||+|++++|.|+.    +...++..|++++.+|.+  .++.+|++++++.+++   +++++++++
T Consensus        94 i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~---~t~lv~i~~  168 (401)
T PRK10874         94 INLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLG--ADRLPDVDLLPELITP---RTRILALGQ  168 (401)
T ss_pred             HHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecC--CCCcCCHHHHHHhcCc---CcEEEEEeC
Confidence            999854432  24699999999999864    556667889999999983  4578999999999975   788999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEE
Q 012647          238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (459)
Q Consensus       238 p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (459)
                      |+||||.++   ++++|+++|+++|+++|+|++|.. +..+.     .+    ...+.++++.|++|.+|++|  +||++
T Consensus       169 ~~n~tG~~~---~~~~i~~l~~~~g~~~ivD~a~~~-g~~~~-----~~----~~~~~d~~~~s~~K~~gp~G--~G~l~  233 (401)
T PRK10874        169 MSNVTGGCP---DLARAITLAHQAGMVVMVDGAQGA-VHFPA-----DV----QALDIDFYAFSGHKLYGPTG--IGVLY  233 (401)
T ss_pred             CcccccCcC---CHHHHHHHHHHcCCEEEEECCccc-ccccC-----Cc----hhcCCCEEEEecccccCCCc--cEEEE
Confidence            999999995   567899999999999999999643 22111     11    12235688899999999888  69987


Q ss_pred             EEeCChhHHHHHHHHHHh-----------------hccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012647          318 VVCSSSDLAARVKSQLKR-----------------LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR  380 (459)
Q Consensus       318 ~v~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~  380 (459)
                      +   +++.++.+......                 ..+...++++..++.++...++   +..  ....++..++.++.+
T Consensus       234 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~---~l~--~~g~~~~~~~~~~l~  305 (401)
T PRK10874        234 G---KSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALE---WLA--DIDINQAESWSRSLA  305 (401)
T ss_pred             E---chHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHH---HHH--HhCHHHHHHHHHHHH
Confidence            6   77744433211000                 0001112334333333333331   111  112355778888889


Q ss_pred             HHHHHHHhhcc-CCCCCccccc-CCcceeee--cCCCHHHHHHHHhcccEEEcCC--------------C--cEEEccC-
Q 012647          381 QKLFDSLSAKD-KSGKDWSFIL-RQIGMFSF--TGLNKAQSDNMTNKWHVYMTKD--------------G--RISLAGL-  439 (459)
Q Consensus       381 ~~l~~~L~~~~-g~~~~~~~~~-~~~g~f~~--~~l~~~~~~~ll~~~gI~v~~g--------------g--Ris~~~~-  439 (459)
                      +++.+.|+ ++ |    +.... +..+++.|  .+++.+.+...|+++||.+.+|              |  |||++.+ 
T Consensus       306 ~~l~~~l~-~~~g----~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~n  380 (401)
T PRK10874        306 TLAEDALA-KLPG----FRSFRCQDSSLLAFDFAGVHHSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYN  380 (401)
T ss_pred             HHHHHHHh-cCCC----EEEeCCCCCcEEEEEECCcCHHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEEEEEecccC
Confidence            99999998 76 4    44443 34444333  2445555545555679998762              3  9999866 


Q ss_pred             ChhhHHHHHHHHHHHHhhc
Q 012647          440 SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       440 ~~e~i~~~~~~l~~~~~~~  458 (459)
                      +++|++.++++|+++++.+
T Consensus       381 t~edid~ll~al~~~~~~~  399 (401)
T PRK10874        381 TQSDVDALVNAVDRALELL  399 (401)
T ss_pred             CHHHHHHHHHHHHHHHHHh
Confidence            8899999999999988764

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.97  E-value=2e-29  Score=238.97  Aligned_cols=326  Identities=17%  Similarity=0.088  Sum_probs=241.8

Q ss_pred             ccCCCCCCccCcHHHHHHHHHHhhcCC-----CCCCC--CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHH
Q 012647           92 AYRTEELQPYVLDVVKKAENLMLERGE-----NKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSL  164 (459)
Q Consensus        92 ~~~~~~~~~~~~~~v~~a~~~~~~~~~-----~~~Y~--~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~  164 (459)
                      .|+|++..+++.|+|.++|..++....     .+.|+  ....+++.|+.||+.++.+      +++|++  |+||||++
T Consensus         3 iYlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~------~~eIiF--TSG~TEsn   74 (386)
T COG1104           3 IYLDNAATTPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGAD------PEEIIF--TSGATESN   74 (386)
T ss_pred             ccccccccCCCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCC------CCeEEE--ecCCcHHH
Confidence            477888888889999999999885421     12222  2345688999999998765      789999  99999999


Q ss_pred             HHHHHHHHHhC----CCCEEEEcCCCCcchHHHhhh---CCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCC
Q 012647          165 RLAAALIERYF----PGAKVLISSPTWGNHKNIFND---ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (459)
Q Consensus       165 ~l~~~~~~~~~----~gd~Vlv~~p~y~~~~~~~~~---~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~  237 (459)
                      +++.+......    .|.+|+++.--++...+.++.   .|++|.++|+  +.++.+|+++|+++|++   +|.++.++.
T Consensus        75 NlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V--~~~G~v~~e~L~~al~~---~T~LVSim~  149 (386)
T COG1104          75 NLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPV--DSNGLVDLEQLEEALRP---DTILVSIMH  149 (386)
T ss_pred             HHHHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCC--CCCCeEcHHHHHHhcCC---CceEEEEEe
Confidence            99965522222    467788877676666555554   5999999999  45789999999999997   899999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEE
Q 012647          238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (459)
Q Consensus       238 p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (459)
                      .||.||++   +++++|+++|+++++++++|.+ |.++--+.         .+...+-++...|-+|.+|+.|  +|+++
T Consensus       150 aNnE~G~I---QpI~ei~~i~k~~~i~fHvDAv-Qa~Gkipi---------~~~~~~vD~ls~SaHK~~GpkG--iGaLy  214 (386)
T COG1104         150 ANNETGTI---QPIAEIGEICKERGILFHVDAV-QAVGKIPI---------DLEELGVDLLSFSAHKFGGPKG--IGALY  214 (386)
T ss_pred             cccCeeec---ccHHHHHHHHHHcCCeEEEehh-hhcCceec---------cccccCcceEEeehhhccCCCc--eEEEE
Confidence            99999999   9999999999999999999999 87773221         1233346788889999999999  89997


Q ss_pred             EEeCChhHHHHHHHH--HHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 012647          318 VVCSSSDLAARVKSQ--LKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGK  395 (459)
Q Consensus       318 ~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  395 (459)
                      +  ++......++..  ..+..|..+.+.+.+.....+.-+.        .++++....++..+|++|.+.|. +.. |.
T Consensus       215 v--~~~~~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a--------~~~~~~~~~~~~~lr~~l~~~l~-~~~-p~  282 (386)
T COG1104         215 V--RPGVRLEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIA--------VEELEEENARLRKLRDRLEDGLL-EII-PD  282 (386)
T ss_pred             E--CCCCccCceeccCcCCCCCCCCCccHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH-hcC-Cc
Confidence            5  222222222221  2333445555666554333322111        34567788889999999999998 641 11


Q ss_pred             Ccc------cccCCcceeeecCCCHHHHHHHHhcccEEEcCC-----------------C----------cEEEccC-Ch
Q 012647          396 DWS------FILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKD-----------------G----------RISLAGL-SL  441 (459)
Q Consensus       396 ~~~------~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~g-----------------g----------Ris~~~~-~~  441 (459)
                       +.      ...|+.-.|.|.++..+.+...++.+||++..|                 |          ||||+.. ++
T Consensus       283 -~~~~g~~~~rlP~~~~~~f~gv~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~  361 (386)
T COG1104         283 -VYLNGDDEPRLPNILNFSFPGVEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTE  361 (386)
T ss_pred             -EEEcCCcccCCCCeEEEEeCCCcHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCH
Confidence             11      223444567788999999888888899999887                 1          9999876 78


Q ss_pred             hhHHHHHHHHHHHHhhc
Q 012647          442 AKCEYLADAIIDSYHNV  458 (459)
Q Consensus       442 e~i~~~~~~l~~~~~~~  458 (459)
                      +|++++++++.++++++
T Consensus       362 eei~~~~~~l~~~i~~l  378 (386)
T COG1104         362 EEIDAAAEALKEIIKRL  378 (386)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999875

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.97  E-value=9.2e-28  Score=239.87  Aligned_cols=326  Identities=10%  Similarity=0.092  Sum_probs=223.3

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCc---cc----HHHHHHHHHHHhcCCCCccccCceEE
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIE---GL----AAFNKVTAELLFGADNSVLKEQRVAT  154 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~---g~----~~lr~aia~~l~~~~~~~~~~~~i~~  154 (459)
                      +.++|||+.|.|+   +.+. +|++.+++.+.+.+.. ..|++..   |.    .++++++|+++..        +++++
T Consensus        37 g~~~i~~~~~~~l---g~~~-~~~v~~~~~~~~~~~~-~~~~~s~~~~G~~~~~~~le~~ia~~~g~--------~~~ii  103 (393)
T TIGR01822        37 GREVLNFCANNYL---GLSS-HPDLIQAAKDALDEHG-FGMSSVRFICGTQDIHKELEAKIAAFLGT--------EDTIL  103 (393)
T ss_pred             CceEEEeeCCCcc---ccCC-CHHHHHHHHHHHHHhC-CCCCCcCcccCChHHHHHHHHHHHHHhCC--------CcEEE
Confidence            4579999999875   4443 7888998888876421 3555554   65    8899999999754        34666


Q ss_pred             eecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCCcE
Q 012647          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSF  231 (459)
Q Consensus       155 ~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~  231 (459)
                        ++||++|+..+  +...+.+||+|++++|+|+.+...++..+.+.+.++       .+|++.+++.+++.   ..+++
T Consensus       104 --~~~~~~a~~~~--~~~l~~~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~-------~~d~~~l~~~i~~~~~~~~~~~  172 (393)
T TIGR01822       104 --YASCFDANGGL--FETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYA-------NNDMADLEAQLKEARAAGARHR  172 (393)
T ss_pred             --ECchHHHHHHH--HHHhCCCCCEEEEeccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhhhcCCCce
Confidence              68899999987  344478999999999999999988888887764432       36899999998752   12678


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEEcCCcCcccCC
Q 012647          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYA  310 (459)
Q Consensus       232 ~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G  310 (459)
                      ++++++++||||.+   .++++|+++|++||+++|+||+|. +++.+.  ...+.....+ ..+.+++++|+||.++  |
T Consensus       173 ~v~~~~v~~~tG~~---~~l~~i~~la~~~~~~li~De~~~-~g~~~~--~~~~~~~~~~~~~~~di~~~s~sK~l~--g  244 (393)
T TIGR01822       173 LIATDGVFSMDGVI---APLDEICDLADKYDALVMVDECHA-TGFLGP--TGRGSHELCGVMGRVDIITGTLGKALG--G  244 (393)
T ss_pred             EEEEeCCccCCCCc---CCHHHHHHHHHHcCCEEEEECCcc-ccCcCC--CCCchHHhcCCCCCCeEEEEEChHHhh--C
Confidence            88888899999999   568899999999999999999984 332111  1111111222 1245799999999864  7


Q ss_pred             CCcceEEEEeCChhHHHHHHHHHHhhccccccC-CchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012647          311 ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSN-PPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA  389 (459)
Q Consensus       311 ~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  389 (459)
                      +|+||+++   +++..+.+......   ..+.+ .+...+.++...|+   +    .+..++.+++++++++++.+.|+ 
T Consensus       245 ~r~G~~~~---~~~~~~~l~~~~~~---~~~~~~~~~~~~~a~~~al~---~----~~~~~~~~~~~~~~~~~l~~~L~-  310 (393)
T TIGR01822       245 ASGGFTTA---RKEVVELLRQRSRP---YLFSNSLPPAVVGASIKVLE---M----LEASNELRDRLWANTRYFRERME-  310 (393)
T ss_pred             CCcEEEEe---CHHHHHHHHHhCcc---ceecCCCCHHHHHHHHHHHH---H----HhcCHHHHHHHHHHHHHHHHHHH-
Confidence            89999866   78855555432111   11222 22222223333331   1    11245678899999999999998 


Q ss_pred             ccCCCCCcccccCCcceeeec--C-C-CHHHHHHHHhcccEEEcC-------CC----cEEEccC-ChhhHHHHHHHHHH
Q 012647          390 KDKSGKDWSFILRQIGMFSFT--G-L-NKAQSDNMTNKWHVYMTK-------DG----RISLAGL-SLAKCEYLADAIID  453 (459)
Q Consensus       390 ~~g~~~~~~~~~~~~g~f~~~--~-l-~~~~~~~ll~~~gI~v~~-------gg----Ris~~~~-~~e~i~~~~~~l~~  453 (459)
                      +.|    +.+..+.+.++.+.  + . ..++++.|+++ ||.+..       .+    ||+++.. +++++++++++|.+
T Consensus       311 ~~g----~~~~~~~~~~~~i~~~~~~~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~  385 (393)
T TIGR01822       311 AAG----FDIKPADHPIIPVMLYDAVLAQRFARRLLEE-GIYVTGFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTR  385 (393)
T ss_pred             HcC----CCCCCCCCCEEEEEeCCHHHHHHHHHHHHHC-CeeEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence            776    45544454444322  1 1 23456677765 998862       12    7777654 79999999999999


Q ss_pred             HHhhc
Q 012647          454 SYHNV  458 (459)
Q Consensus       454 ~~~~~  458 (459)
                      +++++
T Consensus       386 ~~~~~  390 (393)
T TIGR01822       386 IGREL  390 (393)
T ss_pred             HHHHh
Confidence            88764

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK10534 L-threonine aldolase; Provisional

Probab=99.97  E-value=2.5e-28  Score=238.42  Aligned_cols=316  Identities=13%  Similarity=0.022  Sum_probs=209.3

Q ss_pred             eeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHH
Q 012647           86 LNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR  165 (459)
Q Consensus        86 i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~  165 (459)
                      |||+..+.      |.++|.+.+++.+... + ...|+|..+..+|+++++++++.        +.+++  +.||++++.
T Consensus         2 ~~~~~~~~------~~p~~~~~~a~~~~~~-~-~~~Y~~~~~~~~L~~~la~~~g~--------~~~~v--~~~g~~a~~   63 (333)
T PRK10534          2 IDLRSDTV------TRPSRAMLEAMMAAPV-G-DDVYGDDPTVNALQDYAAELSGK--------EAALF--LPTGTQANL   63 (333)
T ss_pred             cccccccC------CCCCHHHHHHHHhccC-C-CcccCCCHHHHHHHHHHHHHhCC--------CeEEE--eCchHHHHH
Confidence            56665543      3348999999877543 3 36788888999999999999642        23345  788888877


Q ss_pred             HHHHHHHHhCCCCEEEEcCCCCcc-hHHH-hhhCC-CCeeeeeeecCCCCCCCHHHHHHHHHcCC---CCcEEEEeCCCC
Q 012647          166 LAAALIERYFPGAKVLISSPTWGN-HKNI-FNDAR-VPWSEYRYYDPKTVGLDFEGMIADIKAAP---GGSFILLHGCAH  239 (459)
Q Consensus       166 l~~~~~~~~~~gd~Vlv~~p~y~~-~~~~-~~~~G-~~v~~v~~~~~~~~~~d~e~l~~~i~~~~---~~~~~ii~~~p~  239 (459)
                      ++  +...+.+||+|+++.|+|.. |... ....| ++++.+++  ++++.+|++++++++++..   .+++++++|||+
T Consensus        64 ~~--l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~  139 (333)
T PRK10534         64 VA--LLSHCERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDA--AADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH  139 (333)
T ss_pred             HH--HHHhcCCCCeeEEechhhhhHhcCCchHHhcCceEEeecC--CCCCCCCHHHHHHhhcccCcCcccceEEEEecCC
Confidence            76  44457799999999888753 4321 23333 67777776  3468899999999886410   146788888655


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcce-EEE
Q 012647          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA-MNV  318 (459)
Q Consensus       240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~-~~~  318 (459)
                        ||.+++.+++++|+++|++|++++++||+|..........   ....+....++++  .||||.||++   +|| +++
T Consensus       140 --~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~---~~~~~~~~~~~~~--~s~SK~~~~~---~G~~~~~  209 (333)
T PRK10534        140 --NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGC---ELKEITQYCDSFT--ICLSKGLGTP---VGSLLVG  209 (333)
T ss_pred             --CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCC---CHHHHHhcCCEEE--EEeEcCCCCc---ccceEEc
Confidence              6999999999999999999999999999976221100001   1112222123333  4899998864   784 544


Q ss_pred             EeCChhHHHHHHHHHHhhcccccc--CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 012647          319 VCSSSDLAARVKSQLKRLARPMYS--NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKD  396 (459)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~  396 (459)
                         +++.++.+.....    ....  +....+|.++...|++.          .+..++..+.++++.+.|+ ++|    
T Consensus       210 ---~~~~i~~~~~~~~----~~~~~~~~~~~~~a~~~~~l~~~----------~~~~~~~~~~r~~l~~~L~-~~g----  267 (333)
T PRK10534        210 ---NRDYIKRARRWRK----MTGGGMRQAGILAAAGLYALKHN----------VARLQEDHDNAAWLAEQLR-EAG----  267 (333)
T ss_pred             ---CHHHHHHHHHHHH----HhCCchhhHHHHHHHHHHHHHhh----------HHHHHHHHHHHHHHHHHHH-hCC----
Confidence               8886555543222    1111  22234455544444320          1222234446789999999 887    


Q ss_pred             cccccCCcceeeecCCC---HHHHHHHHhcccEEEcCCC--cEEEc-cCChhhHHHHHHHHHHHHh
Q 012647          397 WSFILRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKDG--RISLA-GLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       397 ~~~~~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~gg--Ris~~-~~~~e~i~~~~~~l~~~~~  456 (459)
                      +++.++ +++|+|+.+.   .+.+.++++++||.++|+.  |++.. ..++|++++++++|++++.
T Consensus       268 ~~~~~~-~~nfv~~~~~~~~~~~~~~~l~~~gi~v~~~~~~rl~~~~r~t~e~~~~~~~~l~~~~~  332 (333)
T PRK10534        268 ADVMRQ-DTNMLFVRVGEEQAAALGEYMRERNVLINASPIVRLVTHLDVSREQLAEVVAHWRAFLA  332 (333)
T ss_pred             CccCCC-CceEEEEECCchhHHHHHHHHHHcCeeecCCceEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence            566766 4778888663   3445566666799999986  88653 2489999999999998764

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.96  E-value=1.9e-27  Score=231.48  Aligned_cols=293  Identities=15%  Similarity=0.128  Sum_probs=206.5

Q ss_pred             cHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEE
Q 012647          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLI  182 (459)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv  182 (459)
                      .|.+.++..+.++.-  .  ++..-..+|++.+|+++..      +++++++  ++||++++..+  +.+.+.+||+|++
T Consensus        35 ~~~~~~~~~~~~~~~--~--g~~~~~~~Le~~lA~~~g~------~~e~ilv--~~gg~~a~~~~--~~al~~~gd~Vli  100 (346)
T TIGR03576        35 GFKIDEEDLELLETY--V--GPAIFEEKVQELGREHLGG------PEEKILV--FNRTSSAILAT--ILALEPPGRKVVH  100 (346)
T ss_pred             ChhHHHHHHHHHHHh--c--CCHHHHHHHHHHHHHHcCC------CcceEEE--ECCHHHHHHHH--HHHhCCCCCEEEE
Confidence            688888888877441  1  2334456777777777543      2688999  99999999998  4555779999997


Q ss_pred             c---CCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 012647          183 S---SPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQ  259 (459)
Q Consensus       183 ~---~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~  259 (459)
                      +   .|+|..|...++..|++++.+         .|++.++. .    ++++++++ +++||+|.+++.+++++|+++|+
T Consensus       101 ~~~d~p~~~s~~~~~~l~ga~~~~~---------~~l~~l~~-~----~~~~lIii-tg~s~~G~v~~~~~L~~i~~la~  165 (346)
T TIGR03576       101 YLPEKPAHPSIPRSCKLAGAEYFES---------DELSELKK-I----DGTSLVVI-TGSTMDLKVVSEEDLKRVIKQAK  165 (346)
T ss_pred             CCCCCCCchhHHHHHHHcCCEEecc---------CCHHHHhh-C----cCceEEEE-ECCCCCCcccCHHHHHHHHHHHH
Confidence            5   478888888899999875322         14454322 1    24566665 45799999999999999999999


Q ss_pred             hcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccc
Q 012647          260 EKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARP  339 (459)
Q Consensus       260 ~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~  339 (459)
                      +||+++++||+|..+..+.... . ...   ... ..+++.||||  +++|+|+||+++   +++.++.    +....+.
T Consensus       166 ~~~~~livDEAy~~~~~~~~~~-~-~~~---~~~-~divv~s~SK--alaG~r~G~v~~---~~~li~~----l~~~~~~  230 (346)
T TIGR03576       166 SKEAIVLVDDASGARVRRLYGQ-P-PAL---DLG-ADLVVTSTDK--LMDGPRGGLLAG---RKELVDK----IKSVGEQ  230 (346)
T ss_pred             HcCCEEEEECCccccccccCCC-C-CHH---HcC-CcEEEeccch--hccccceEEEEe---CHHHHHH----HHHhhcC
Confidence            9999999999998765321111 1 111   112 2366779999  578999999876   8884444    4443333


Q ss_pred             cccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCC----HH
Q 012647          340 MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN----KA  415 (459)
Q Consensus       340 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~----~~  415 (459)
                      ...+.+.+.|.++...|+...        .+..++.++++++.+.+.++ .++      +.++.++ |+|+.++    .+
T Consensus       231 ~~~s~~~~~~~aa~~aL~~~~--------~~~~~~~l~~r~~~~~~~l~-~~~------~~~~~~~-f~~~~~~~~~~~~  294 (346)
T TIGR03576       231 FGLEAQAPLLAAVVRALEEFE--------LSRIRDAFKRKEEVYLRLFD-KLN------VERTPTG-FVIKGVEEEKLIE  294 (346)
T ss_pred             cccCccHHHHHHHHHHHhhcc--------HHHHHHHHHHHHHHHHHHHH-hCC------CCcCCCe-EEEEeCCCCCHHH
Confidence            332456667777777775421        24567888888888888887 553      3444555 7888663    36


Q ss_pred             HHHHHHhcccEEEcCC-------C--cEEEccCChh---hHHHHHHHHHHHHh
Q 012647          416 QSDNMTNKWHVYMTKD-------G--RISLAGLSLA---KCEYLADAIIDSYH  456 (459)
Q Consensus       416 ~~~~ll~~~gI~v~~g-------g--Ris~~~~~~e---~i~~~~~~l~~~~~  456 (459)
                      ++.++++++||.++|+       |  |||++. +++   +++.++++|++.++
T Consensus       295 ~~~~ll~~~gV~v~~~~~f~~~~~~vRis~~~-~~~~~~~~~~~~~al~~~~~  346 (346)
T TIGR03576       295 IGLDLLRNYGIITITAVGMPGASKTLRFDLAA-KDAERIGDDYLVEAVKDSLK  346 (346)
T ss_pred             HHHHHHHhCCEEEeCCcccCCCCCeEEEEEec-ChHHhcCHHHHHHHHHhccC
Confidence            7889998899999995       2  999996 444   79999999987653

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.96  E-value=1.4e-27  Score=235.68  Aligned_cols=320  Identities=13%  Similarity=0.037  Sum_probs=215.5

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhc-CC-CCCC----CCCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GE-NKEY----LPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~-~~~Y----~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (459)
                      +.++|||+.|.|+   +++ .+|.+.+++.+.+.. +. ...|    +......++++++++++..       ++.|++ 
T Consensus        15 g~~~id~~~~~~~---g~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~-------~~~i~~-   82 (360)
T TIGR00858        15 GRRLLNFSSNDYL---GLA-SHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGT-------EAALLF-   82 (360)
T ss_pred             CceEEecccCCcc---cCC-CCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC-------CCEEEE-
Confidence            4678999999652   333 278899999888754 11 0112    1123356788999998642       466776 


Q ss_pred             ecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCC-CCcEEEE
Q 012647          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP-GGSFILL  234 (459)
Q Consensus       156 ~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~-~~~~~ii  234 (459)
                       ++| ++++..+  +...+.+||+|+++.|+|..+...++..|++++.++.       +|++.+++.++... +++++++
T Consensus        83 -~~G-~~~~~~~--l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~~~~~v~  151 (360)
T TIGR00858        83 -SSG-YLANVGV--ISALVGKGDLILSDALNHASLIDGCRLSGARVRRYRH-------NDVEHLERLLEKNRGERRKLIV  151 (360)
T ss_pred             -Cch-HHHHHHH--HHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEecC-------CCHHHHHHHHHHcccCCCeEEE
Confidence             665 5555544  3334679999999999999999999999999887763       58899999887632 3578888


Q ss_pred             eCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH--hcCCeEEEEEcCCcCcccCCCC
Q 012647          235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA--TRGMELLVAQSYSKNLGLYAER  312 (459)
Q Consensus       235 ~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~S~SK~~~~~G~R  312 (459)
                      +++++||||..   .++++|.++|+++|+++|+||+|..+.++.   +..+.....  ...+++++++||||.|+++|  
T Consensus       152 ~~~~~~~~G~~---~~~~~i~~l~~~~~~~li~De~~~~~~~~~---~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~g--  223 (360)
T TIGR00858       152 TDGVFSMDGDI---APLPQLVALAERYGAWLMVDDAHGTGVLGE---DGRGTLEHFGLKPEPVDIQVGTLSKALGSYG--  223 (360)
T ss_pred             EeCCccCCCCC---cCHHHHHHHHHHcCcEEEEECcccccCcCC---CCCchHHhcCCCccCCcEEEEechhhhhccC--
Confidence            89999999998   668889999999999999999987654431   111111111  22357899999999999876  


Q ss_pred             cceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          313 IGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       313 iG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                       ||+++   +++..+.+.......  ....+.+...+.++...++.       .+..++.+++++++++++.+.|+ +++
T Consensus       224 -G~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~al~~-------~~~~~~~~~~~~~~~~~l~~~L~-~~~  289 (360)
T TIGR00858       224 -AYVAG---SQALIDYLINRARTL--IFSTALPPAVAAAALAALEL-------IQEEPWRREKLLALIARLRAGLE-ALG  289 (360)
T ss_pred             -cEEEc---CHHHHHHHHHhCccc--eecCCCCHHHHHHHHHHHHH-------HhhCHHHHHHHHHHHHHHHHHHH-HcC
Confidence             99865   777444433221110  11112333333333333321       11235678899999999999999 876


Q ss_pred             CCCCcccccCCcceeeecCCC-----HHHHHHHHhcccEEEcCC-------C----cEEEccC-ChhhHHHHHHHHH
Q 012647          393 SGKDWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD-------G----RISLAGL-SLAKCEYLADAII  452 (459)
Q Consensus       393 ~~~~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g-------g----Ris~~~~-~~e~i~~~~~~l~  452 (459)
                          +.+..+ ++.|+|+.+.     .++.++|++ +||.+.++       |    ||+++.. +++++++++++|+
T Consensus       290 ----~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~-~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~  360 (360)
T TIGR00858       290 ----FTLMPS-CTPIVPVIIGDNASALALAEELQQ-QGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK  360 (360)
T ss_pred             ----CccCCC-CCCEEEEEeCCHHHHHHHHHHHHH-CCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence                455544 4556666442     245566655 69999641       2    9998854 8899999998873

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.96  E-value=2.1e-27  Score=237.72  Aligned_cols=330  Identities=12%  Similarity=0.071  Sum_probs=224.6

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCC---CCCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY---LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y---~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      +.++|||+.|.|.   +++. ++.+.+++.+.+.... ..|   ....|..++++++++++...++.   +++|++  |+
T Consensus        41 g~~~i~l~~~~~~---~~~~-~~~i~~a~~~~~~~~~-~~~~~~~~~~G~~~l~~~l~~~la~~~g~---~~~i~~--ts  110 (397)
T PRK06939         41 GKEVINFCANNYL---GLAN-HPELIAAAKAALDSHG-FGMASVRFICGTQDLHKELEEKLAKFLGT---EDAILY--SS  110 (397)
T ss_pred             CCeEEEeeccCcc---ccCC-CHHHHHHHHHHHHHcC-CCCcccccccCCcHHHHHHHHHHHHHhCC---CcEEEE--cC
Confidence            5679999999752   4443 7889998888875421 233   23468888888887777665553   366777  66


Q ss_pred             cchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCcEEEEe
Q 012647          159 SGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGSFILLH  235 (459)
Q Consensus       159 ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~ii~  235 (459)
                      | ++++..+  +...+.+||+|++++|+|+.+...++.+|++++.++.       .|++.+++.+++   ...+++++++
T Consensus       111 G-~~a~~~~--~~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~i~~~~~~~~~~~~v~~  180 (397)
T PRK06939        111 C-FDANGGL--FETLLGKEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMADLEAQLKEAKEAGARHKLIAT  180 (397)
T ss_pred             h-HHHHHHH--HHHhCCCCCEEEEEhhhhHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhhhccCCCCeEEEE
Confidence            6 7777777  3445789999999999999999999999998877754       478888888864   1226777887


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEEcCCcCcccCCCCcc
Q 012647          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAERIG  314 (459)
Q Consensus       236 ~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~RiG  314 (459)
                      .+.+||||..   +++++|.++|++||+++|+||+|.....+ .... ... .... ..+.+++++||||.++  |+|+|
T Consensus       181 ~~v~~~~G~~---~~~~~l~~la~~~~~~li~De~~~~g~~~-~~~~-~~~-~~~~~~~~~~i~~~S~sK~~~--g~r~G  252 (397)
T PRK06939        181 DGVFSMDGDI---APLPEICDLADKYDALVMVDDSHAVGFVG-ENGR-GTV-EHFGVMDRVDIITGTLGKALG--GASGG  252 (397)
T ss_pred             ecCcCCCCCc---CCHHHHHHHHHHhCCEEEEECcccccCcC-CCCC-CHH-HHcCCCCCCcEEEEECHHHhC--ccCce
Confidence            7789999997   78999999999999999999998522111 1011 111 1112 1235799999999995  56999


Q ss_pred             eEEEEeCChhHHHHHHHHHHhhccccccCC-chHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012647          315 AMNVVCSSSDLAARVKSQLKRLARPMYSNP-PVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  393 (459)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  393 (459)
                      |+++   +++.++.+.....   ...+.++ +...+.++...++.   .    +..++.+++++++++++.+.|+ +++ 
T Consensus       253 ~v~~---~~~~~~~l~~~~~---~~~~~~~~~~~~~~a~~~al~~---~----~~~~~~~~~~~~~~~~l~~~L~-~~~-  317 (397)
T PRK06939        253 YTAG---RKEVIDWLRQRSR---PYLFSNSLAPAIVAASIKVLEL---L----EESDELRDRLWENARYFREGMT-AAG-  317 (397)
T ss_pred             EEEe---CHHHHHHHHHhCc---cccccCCCCHHHHHHHHHHHHH---H----hcCHHHHHHHHHHHHHHHHHHH-HcC-
Confidence            9866   7775555433211   1112222 22222333222211   0    1124677889999999999999 876 


Q ss_pred             CCCcccccCCcceeeec-C--C-CHHHHHHHHhcccEEEcCC-------C----cEEEcc-CChhhHHHHHHHHHHHHhh
Q 012647          394 GKDWSFILRQIGMFSFT-G--L-NKAQSDNMTNKWHVYMTKD-------G----RISLAG-LSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       394 ~~~~~~~~~~~g~f~~~-~--l-~~~~~~~ll~~~gI~v~~g-------g----Ris~~~-~~~e~i~~~~~~l~~~~~~  457 (459)
                         ++...+.++++.+. +  . +.++++.|+++ ||.+.++       +    ||+++. .+++++++++++|++++++
T Consensus       318 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-gI~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~  393 (397)
T PRK06939        318 ---FTLGPGEHPIIPVMLGDAKLAQEFADRLLEE-GVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKE  393 (397)
T ss_pred             ---CCcCCCCCCEEEEEECCHHHHHHHHHHHHHC-CceEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence               45555666666432 2  1 23557777776 9988642       1    888865 4899999999999999876


Q ss_pred             c
Q 012647          458 V  458 (459)
Q Consensus       458 ~  458 (459)
                      +
T Consensus       394 ~  394 (397)
T PRK06939        394 L  394 (397)
T ss_pred             h
Confidence            4

>PRK02948 cysteine desulfurase; Provisional

Probab=99.96  E-value=5.1e-28  Score=240.63  Aligned_cols=323  Identities=13%  Similarity=0.049  Sum_probs=217.9

Q ss_pred             cCCCCCCccCcHHHHHHHHHHhhcCCCCCCC--------CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHH
Q 012647           93 YRTEELQPYVLDVVKKAENLMLERGENKEYL--------PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSL  164 (459)
Q Consensus        93 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~--------~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~  164 (459)
                      |+|..+..++++.+.+++.+.+.... .++.        ...-++++|+.++++++..      +++|++  ++|+++++
T Consensus         3 yld~a~~~~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~------~~~i~~--~~g~t~a~   73 (381)
T PRK02948          3 YLDYAATTPMSKEALQTYQKAASQYF-GNESSLHDIGGTASSLLQVCRKTFAEMIGGE------EQGIYF--TSGGTESN   73 (381)
T ss_pred             eccCCCCCCCCHHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHHHHHHHHhCCC------CCeEEE--eCcHHHHH
Confidence            56666666678999999988775311 1111        0123567888899887543      688999  99999999


Q ss_pred             HHHHHHHHH--hCCCCEEEEcCCCCcch---HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCC
Q 012647          165 RLAAALIER--YFPGAKVLISSPTWGNH---KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (459)
Q Consensus       165 ~l~~~~~~~--~~~gd~Vlv~~p~y~~~---~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~  239 (459)
                      .++...+..  ..+||+|+++.+.|+.+   ...++..|++++.+|++  +++.+|++.+++.+++   +++++++++|+
T Consensus        74 ~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~l~~---~~~lv~~~~~~  148 (381)
T PRK02948         74 YLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVD--KSGLIRLVDLERAITP---DTVLASIQHAN  148 (381)
T ss_pred             HHHHHHHHHhccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeC--CCCCCCHHHHHHhcCC---CCEEEEEECCc
Confidence            987433321  14789999998666544   44566789999999984  4567999999999875   67889999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEE
Q 012647          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (459)
Q Consensus       240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (459)
                      ||||.+   .++++|.++|+++|+++++|++ +.++..+.+         +...+.++++.|+||.+|++|  +|++++ 
T Consensus       149 n~tG~~---~~~~~I~~l~~~~~~~vivD~~-~~~g~~~~~---------~~~~~~d~~~~s~~K~~gp~G--~G~l~~-  212 (381)
T PRK02948        149 SEIGTI---QPIAEIGALLKKYNVLFHSDCV-QTFGKLPID---------VFEMGIDSLSVSAHKIYGPKG--VGAVYI-  212 (381)
T ss_pred             CCcEee---hhHHHHHHHHHHcCCEEEEECh-hhccccccC---------cccCCCCEEEecHHhcCCCCc--EEEEEE-
Confidence            999999   5577899999999999999965 666532211         123356788999999999989  799865 


Q ss_pred             eCChhH-HHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcc
Q 012647          320 CSSSDL-AARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWS  398 (459)
Q Consensus       320 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~  398 (459)
                        +++. +..+.............+++..++.++...|...      .+.+++.+++++++++++.+.|+ ++|+    +
T Consensus       213 --~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~~~----~  279 (381)
T PRK02948        213 --NPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENI------LKNMQEESLRFKELRSYFLEQIQ-TLPL----P  279 (381)
T ss_pred             --cCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHh-cCCC----C
Confidence              4441 1111000000000112245555655555555321      23367888999999999999999 8863    3


Q ss_pred             cccCC-cc-----e--eeecCCCHHHHHHHHhcccEEEcC-------------------------CC--cEEEccC-Chh
Q 012647          399 FILRQ-IG-----M--FSFTGLNKAQSDNMTNKWHVYMTK-------------------------DG--RISLAGL-SLA  442 (459)
Q Consensus       399 ~~~~~-~g-----~--f~~~~l~~~~~~~ll~~~gI~v~~-------------------------gg--Ris~~~~-~~e  442 (459)
                      +.... ..     +  |...+++.+.+...++++||.++.                         .+  |||++.. +++
T Consensus       280 v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~  359 (381)
T PRK02948        280 IEVEGHSTSCLPHIIGVTIKGIEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKD  359 (381)
T ss_pred             EEEeCCCccCcCCEEEEEeCCCCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHH
Confidence            33221 11     1  111244544433344567999973                         12  9998865 889


Q ss_pred             hHHHHHHHHHHHHhhc
Q 012647          443 KCEYLADAIIDSYHNV  458 (459)
Q Consensus       443 ~i~~~~~~l~~~~~~~  458 (459)
                      |++.++++|+++++++
T Consensus       360 di~~l~~~l~~~~~~~  375 (381)
T PRK02948        360 QIDTTIHALETIGNQF  375 (381)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988753

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.96  E-value=3.5e-27  Score=236.40  Aligned_cols=326  Identities=14%  Similarity=0.083  Sum_probs=220.5

Q ss_pred             ccCCCCCCccCcHHHHHHHHHHhhcCCCC----CCC----CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhH
Q 012647           92 AYRTEELQPYVLDVVKKAENLMLERGENK----EYL----PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (459)
Q Consensus        92 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~~----~Y~----~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (459)
                      .|+|..+..++++.|.+++.+.+......    .|.    ...-.+++|+++++++...     ++++|++  |+|+|++
T Consensus        25 iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-----~~~~v~~--t~g~t~~   97 (406)
T PRK09295         25 AYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINAR-----SAEELVF--VRGTTEG   97 (406)
T ss_pred             EEEeCcccccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcC-----CCCeEEE--eCCHHHH
Confidence            44555555566899999998887532111    110    0123568999999997642     2678999  9999999


Q ss_pred             HHHHHHHHH--HhCCCCEEEEcCCCCcc----hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCC
Q 012647          164 LRLAAALIE--RYFPGAKVLISSPTWGN----HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (459)
Q Consensus       164 ~~l~~~~~~--~~~~gd~Vlv~~p~y~~----~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~  237 (459)
                      +++++..+.  .+.+||+|+++++.|++    |...++..|++++.+|.+  .++.+|++++++++++   +++++++++
T Consensus        98 l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~---~t~lv~l~~  172 (406)
T PRK09295         98 INLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLN--PDGTLQLETLPALFDE---RTRLLAITH  172 (406)
T ss_pred             HHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecC--CCCCCCHHHHHHhcCC---CcEEEEEec
Confidence            998854331  35689999999987753    455667789999999984  4567999999999875   788999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEE
Q 012647          238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (459)
Q Consensus       238 p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (459)
                      |+||||.++   ++++|+++|+++|+++++|++|.. +..+.+         +...+.++++.|++|.+|++|  +||++
T Consensus       173 ~~n~tG~~~---~~~~i~~~~~~~~~~vivD~a~~~-g~~~~~---------~~~~~~D~~~~s~~K~~gp~G--~G~l~  237 (406)
T PRK09295        173 VSNVLGTEN---PLAEMIALAHQHGAKVLVDGAQAV-MHHPVD---------VQALDCDFYVFSGHKLYGPTG--IGILY  237 (406)
T ss_pred             chhcccccC---CHHHHHHHHHHcCCEEEEEccccc-CccccC---------chhcCCCEEEeehhhccCCCC--cEEEE
Confidence            999999995   467899999999999999999643 322111         122345688899999999877  79997


Q ss_pred             EEeCChhHHHHHHHHHHhh------------------ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012647          318 VVCSSSDLAARVKSQLKRL------------------ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV  379 (459)
Q Consensus       318 ~v~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~  379 (459)
                      +   +++..+.+.......                  .+...++++..+..++...++   +..  +..+++++++.+++
T Consensus       238 ~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~---~~~--~~g~~~i~~~~~~l  309 (406)
T PRK09295        238 V---KEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALD---YVS--ALGLNNIAEYEQNL  309 (406)
T ss_pred             E---chHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHH---HHH--HhCHHHHHHHHHHH
Confidence            6   666443321100000                  001111333333333333321   110  12356778888999


Q ss_pred             HHHHHHHHhhccCCCCCcccccC--Ccceeeec--CCCHHHHHHHHhcccEEEcCC--------------C--cEEEccC
Q 012647          380 RQKLFDSLSAKDKSGKDWSFILR--QIGMFSFT--GLNKAQSDNMTNKWHVYMTKD--------------G--RISLAGL  439 (459)
Q Consensus       380 ~~~l~~~L~~~~g~~~~~~~~~~--~~g~f~~~--~l~~~~~~~ll~~~gI~v~~g--------------g--Ris~~~~  439 (459)
                      ++++.+.|. +++   ++++..+  ..+++.|.  +.+.+.+...++++||.++.|              |  |+|++.+
T Consensus       310 ~~~l~~~l~-~~~---~~~~~~~~~~~~iv~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~y  385 (406)
T PRK09295        310 MHYALSQLE-SVP---DLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMY  385 (406)
T ss_pred             HHHHHHHHh-cCC---CEEEeCCCCCceEEEEEECCcCHHHHHHHHHhCCeEEeccccchHHHHHHHCCCCEEEEEccCC
Confidence            999999998 763   1444443  24555442  445555555667789999754              2  9998876


Q ss_pred             -ChhhHHHHHHHHHHHHh
Q 012647          440 -SLAKCEYLADAIIDSYH  456 (459)
Q Consensus       440 -~~e~i~~~~~~l~~~~~  456 (459)
                       +++|++.++++|+++..
T Consensus       386 nt~~did~l~~~l~~i~~  403 (406)
T PRK09295        386 NTHEEVDRLVAGLQRIHR  403 (406)
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence             78999999999988754

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.96  E-value=3.9e-28  Score=212.64  Aligned_cols=277  Identities=19%  Similarity=0.206  Sum_probs=213.0

Q ss_pred             CccccCceEEeecccchhHHHHHHHHHHHhCCC-CEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHH
Q 012647          145 SVLKEQRVATVQGLSGTGSLRLAAALIERYFPG-AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI  223 (459)
Q Consensus       145 ~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~g-d~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i  223 (459)
                      .++++++|++  ..|+-+.+.++.++  .+.|| ++|++.-|+|..|.-.+...+++|+.+|.+  .+|.+|.|++.+.+
T Consensus        82 kpLt~dnic~--GvGsDE~ID~iiR~--~c~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl~--pdF~lnvdai~evl  155 (375)
T KOG0633|consen   82 KPLTSDNICV--GVGSDELIDLIIRC--VCDPGKEKILDCPPTYSMYVVDAAINDAEVVKVPLN--PDFSLNVDAIAEVL  155 (375)
T ss_pred             CCCCccceEE--ecCcHHHHHHHHhh--eecCCccceeecCCcceeEEEEeecCCceEEEecCC--CCccccHHHHHHHH
Confidence            3466899999  99999999998433  36699 899999999999988888899999999994  47999999999988


Q ss_pred             HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCC
Q 012647          224 KAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS  303 (459)
Q Consensus       224 ~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S  303 (459)
                      +.. ...+++++++|+||||..++.+++++|.+-=  -+.++++||+|.+|....      +-..++.+.++++++.+||
T Consensus       156 ~~d-s~iK~~F~tSPgNPtg~~ik~~di~KiLe~p--~nglVVvDEAYidFsg~~------S~~~lV~kYpNLivlqTlS  226 (375)
T KOG0633|consen  156 ELD-SKIKCIFLTSPGNPTGSIIKEDDILKILEMP--DNGLVVVDEAYIDFSGVE------SRMKLVKKYPNLIVLQTLS  226 (375)
T ss_pred             hcc-ccceEEEEcCCCCCCcccccHHHHHHHHhCC--CCcEEEEeeeeEeecccc------ccchHhHhCCceeehhhhh
Confidence            762 3577888999999999999999999888632  279999999999997421      2234578889999999999


Q ss_pred             cCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012647          304 KNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKL  383 (459)
Q Consensus       304 K~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l  383 (459)
                      |.||++|+|+||...   +.+    +...+.+.+.. + +.+..+..++..+|++...     ..++..++.+-+.|.+|
T Consensus       227 KsfGLAGiRvG~~~~---~~~----ia~iln~~KaP-Y-NiS~~~s~~AL~Als~~n~-----kkme~~rdaiv~er~RL  292 (375)
T KOG0633|consen  227 KSFGLAGIRVGYGAF---PLS----IAEILNRAKAP-Y-NISVAGSVAALAALSDSNG-----KKMEDVRDAIVRERERL  292 (375)
T ss_pred             hhcCcceeEeecccc---cHH----HHHHHHhccCC-c-cccchhHHHHHHhcCcccc-----hHHHHHHHHHHHHHHHH
Confidence            999999999999876   777    55555554444 3 5666677788888885432     34788889999999999


Q ss_pred             HHHHhhccCCCCCcccccCCcceeeecCC-------CHHHHHHHHhcccEEEcCCC---------cEEEccCChhhHHHH
Q 012647          384 FDSLSAKDKSGKDWSFILRQIGMFSFTGL-------NKAQSDNMTNKWHVYMTKDG---------RISLAGLSLAKCEYL  447 (459)
Q Consensus       384 ~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-------~~~~~~~ll~~~gI~v~~gg---------Ris~~~~~~e~i~~~  447 (459)
                      ...|. +.++-.  ++..+....|+.+.+       +.....+++.++||.++--|         ||+.+  ++|+...+
T Consensus       293 ~keLt-~v~~~~--~~~gg~daNFiLi~v~~~~n~~akkly~q~at~~gVvVRfrgse~~c~G~lRitvG--t~EentvL  367 (375)
T KOG0633|consen  293 FKELT-EVPFLN--DYPGGSDANFILIEVTGGDNGMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRITVG--TPEENTVL  367 (375)
T ss_pred             HHHhh-cCcccc--CCCCcccccEEEEEEcCCCcHHHHHHHHHHHHhcceEEEEcCCccccceeEEEEcC--CcccchHH
Confidence            99998 764312  223333345655532       33445566667899987542         99988  66788899


Q ss_pred             HHHHHHHH
Q 012647          448 ADAIIDSY  455 (459)
Q Consensus       448 ~~~l~~~~  455 (459)
                      ++.|++++
T Consensus       368 ~k~~K~~l  375 (375)
T KOG0633|consen  368 MKCLKQFL  375 (375)
T ss_pred             HHHHHhhC
Confidence            99888753

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.96  E-value=9.3e-27  Score=232.00  Aligned_cols=331  Identities=14%  Similarity=0.115  Sum_probs=224.9

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhc-C-CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-G-ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~-~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +++++||+.|.+.   ++++ +|.+.+++.+.+.. . ....|.+..|..++++++++++....+.   ++.+++  ++|
T Consensus        32 g~~~id~~~~~~~---g~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~---~~~i~~--~sG  102 (385)
T TIGR01825        32 GKEVINLSSNNYL---GFAD-HPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKT---EAALVF--QSG  102 (385)
T ss_pred             CceEEEeeccCcc---CCCC-CHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCC---CcEEEE--CcH
Confidence            4688999998642   4543 78888888887753 2 1245777889999999999998766553   455666  655


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCC-CCcEEEEeCCC
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP-GGSFILLHGCA  238 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~-~~~~~ii~~~p  238 (459)
                       ++++..+  +...+.+||.|+++.|+|..+...+...|+++..++       .+|++++++.+++.. +++++++++++
T Consensus       103 -~~a~~~a--~~~~~~~gd~vi~~~~~~~~~~~~~~~~g~~~~~~~-------~~d~~~l~~~l~~~~~~~~~~v~~~~v  172 (385)
T TIGR01825       103 -FNTNQGV--LSALLRKGDIVLSDELNHASIIDGLRLTKATKKIYK-------HADMDDLDRVLRENPSYGKKLIVTDGV  172 (385)
T ss_pred             -HHHHHHH--HHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhccCCCeEEEEecC
Confidence             6666665  344477999999999999999888888888776553       378888988887532 36788888999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012647          239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (459)
Q Consensus       239 ~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (459)
                      +||||.+   .++++|.++|++||+++|+||+|..+.++....  .....+--..+.++++.||||.++++|   ||+++
T Consensus       173 ~~~tG~~---~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~~~~  244 (385)
T TIGR01825       173 FSMDGDV---APLPEIVELAERYGAVTYVDDAHGSGVMGEAGR--GTVHHFGLEDKVDIQVGTLSKAIGVVG---GYAAG  244 (385)
T ss_pred             CcCCCCc---cCHHHHHHHHHHhCCEEEEECcccccCcCCCCC--ccHhhcCCCcCCcEEEEeccHHhhcCC---CEEec
Confidence            9999998   457889999999999999999997665431101  111111112457899999999998766   99855


Q ss_pred             EeCChhHHHHHHHHHHhhcccccc-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Q 012647          319 VCSSSDLAARVKSQLKRLARPMYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDW  397 (459)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~  397 (459)
                         +++.++.+......   .... ..+...+.++...++..   ..    ..+..++++++++++.+.|+ ++|    +
T Consensus       245 ---~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~al~~~---~~----~~~~~~~~~~~~~~l~~~L~-~~g----~  306 (385)
T TIGR01825       245 ---HKELIEYLKNRARP---FLFSTAQPPAVVAALAAAVDEL---QR----SPELMERLWDNTRFFKAGLG-KLG----Y  306 (385)
T ss_pred             ---CHHHHHHHHHhCcc---ccccCCCCHHHHHHHHHHHHHH---hc----CHHHHHHHHHHHHHHHHHHH-HcC----C
Confidence               77755544322111   1112 22334444444433211   00    12355667778999999999 887    5


Q ss_pred             ccccCCcceeeec-CC---CHHHHHHHHhcccEEEcCC-------C----cEEEc-cCChhhHHHHHHHHHHHHhhc
Q 012647          398 SFILRQIGMFSFT-GL---NKAQSDNMTNKWHVYMTKD-------G----RISLA-GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       398 ~~~~~~~g~f~~~-~l---~~~~~~~ll~~~gI~v~~g-------g----Ris~~-~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      ++..+++.++.+. +.   +.++.+.|+++ ||.+.+.       |    |++++ ..+++++++++++|+++++++
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-gi~v~~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~~  382 (385)
T TIGR01825       307 DTGGSETPITPVVIGDEKAAQEFSRRLFDE-GIFAQSIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKEL  382 (385)
T ss_pred             CCCCCCCCEEEEEECCHHHHHHHHHHHHHC-CcEEcccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHHh
Confidence            6666666544332 21   23556777776 9988531       2    67654 238999999999999998764

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PLN02822 serine palmitoyltransferase

Probab=99.96  E-value=3.4e-27  Score=239.30  Aligned_cols=329  Identities=12%  Similarity=0.060  Sum_probs=226.0

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhc-CC-----CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GE-----NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~-----~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (459)
                      +.+.+||+.|.|.+   ... +|.+.+++.+.+++ +.     ...|++..+..+|++++++++..       ++.|++ 
T Consensus       108 G~~~id~~s~~~lg---l~~-~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~-------~~~i~~-  175 (481)
T PLN02822        108 GKDVVNFASANYLG---LIG-NEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGT-------PDSILY-  175 (481)
T ss_pred             CceEEEeECCCcCC---CCC-CHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCC-------CCEEEE-
Confidence            45789999997743   332 78899998888865 21     12477788899999999999753       567888 


Q ss_pred             ecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCCc-E
Q 012647          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGS-F  231 (459)
Q Consensus       156 ~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~-~  231 (459)
                       ++|++ ++..+  +.+...+||.|++....+..+...+...|.+++.++.++.+    +++...+.+...   .+++ +
T Consensus       176 -s~G~~-a~~sa--i~a~~~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~nd~~----~l~~~l~~~~~~~~~~~~~~~  247 (481)
T PLN02822        176 -SYGLS-TIFSV--IPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDME----SLRNTLEKLTAENKRKKKLRR  247 (481)
T ss_pred             -CCHHH-HHHHH--HHHhCCCCCEEEEeCCccHHHHHHHHHcCCeEEEECCCCHH----HHHHHHHHHhhhhcccCCCcE
Confidence             77766 45554  33446799999988877777777788889999998874222    223322222221   1233 6


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh--cCCeEEEEEcCCcCcccC
Q 012647          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT--RGMELLVAQSYSKNLGLY  309 (459)
Q Consensus       232 ~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~~~~  309 (459)
                      ++++..++|+||.+.+   +++|+++|++||+++|+||+|....++....   .+....+  ....++++.||||.||++
T Consensus       248 ~Ivve~i~~~~G~i~~---L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~---G~~e~~~v~~~~~dii~~s~sKalg~~  321 (481)
T PLN02822        248 YIVVEAIYQNSGQIAP---LDEIVRLKEKYRFRVLLDESNSFGVLGKSGR---GLSEHFGVPIEKIDIITAAMGHALATE  321 (481)
T ss_pred             EEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCC---ChHHHcCCCCCCCeEEEecchhhhhhC
Confidence            8888999999999966   7889999999999999999988544442111   1112211  124578999999999999


Q ss_pred             CCCcceEEEEeCChhHHHHHHHHHHhhcc-cccc-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          310 AERIGAMNVVCSSSDLAARVKSQLKRLAR-PMYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSL  387 (459)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  387 (459)
                      |   ||+++   +++.++.    +..... ..++ +.|...+.++...|+..       +...+.+++++++++++.+.|
T Consensus       322 G---G~i~g---~~~ii~~----~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l-------~~~~~~~~~l~~~~~~l~~~L  384 (481)
T PLN02822        322 G---GFCTG---SARVVDH----QRLSSSGYVFSASLPPYLASAAITAIDVL-------EDNPSVLAKLKENIALLHKGL  384 (481)
T ss_pred             C---eEEEc---CHHHHHH----HHhcCCceeeccccCHHHHHHHHHHHHHH-------HhCHHHHHHHHHHHHHHHHHH
Confidence            8   99865   8874443    332222 2232 33455555655555321       112467789999999999999


Q ss_pred             hhcc-CCCCCcccccCCcceeeecCCC-------------HHHHHHHHhcccEEEcCC------------C-cEEEcc-C
Q 012647          388 SAKD-KSGKDWSFILRQIGMFSFTGLN-------------KAQSDNMTNKWHVYMTKD------------G-RISLAG-L  439 (459)
Q Consensus       388 ~~~~-g~~~~~~~~~~~~g~f~~~~l~-------------~~~~~~ll~~~gI~v~~g------------g-Ris~~~-~  439 (459)
                      + +. |    +.+..+.+++++++.+.             .+++++|++++||.+.++            + ||+++. .
T Consensus       385 ~-~~~g----~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~  459 (481)
T PLN02822        385 S-DIPG----LSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGH  459 (481)
T ss_pred             H-hcCC----cccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCC
Confidence            9 75 4    56666667777665431             245778886779999864            1 887663 2


Q ss_pred             ChhhHHHHHHHHHHHHhhc
Q 012647          440 SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       440 ~~e~i~~~~~~l~~~~~~~  458 (459)
                      ++++|++++++|+++++++
T Consensus       460 t~edI~~~~~~l~~~~~~~  478 (481)
T PLN02822        460 TESDILKASESLKRVAASV  478 (481)
T ss_pred             CHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988763

>PLN02721 threonine aldolase

Probab=99.96  E-value=1.2e-26  Score=228.58  Aligned_cols=324  Identities=15%  Similarity=0.112  Sum_probs=205.9

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhH
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (459)
                      .+++|+.+.+    ..|  ++.+.+++.+.........|.  ....+|++++++++...        .+++  +.+|+++
T Consensus         6 ~~~~~~~~~~----~~~--~~~~~~a~~~~~~~~~~~~~~--~~~~~l~~~la~~~~~~--------~~~~--~~~Gs~a   67 (353)
T PLN02721          6 RVVDLRSDTV----TKP--TDAMRAAMANAEVDDDVLGYD--PTALRLEEEMAKIFGKE--------AALF--VPSGTMG   67 (353)
T ss_pred             hhhhhhcccc----cCC--CHHHHHHHHhccCCCcccCCC--HHHHHHHHHHHHHhCCc--------eeEE--ecCccHH
Confidence            4678998887    332  788888887641112223343  33789999999997542        2455  6677777


Q ss_pred             HHHHHHHHHHhC-CCCEEEEcCCCCcchHH---HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC----CCCcEEEEe
Q 012647          164 LRLAAALIERYF-PGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA----PGGSFILLH  235 (459)
Q Consensus       164 ~~l~~~~~~~~~-~gd~Vlv~~p~y~~~~~---~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~----~~~~~~ii~  235 (459)
                      +.++  +...+. +||+|++++|+|.....   .+...|++++.+|.+  +++.+|++.+++.+++.    .++++++++
T Consensus        68 ~~~~--l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l  143 (353)
T PLN02721         68 NLIS--VLVHCDVRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNN--EDGTMDLDAIEAAIRPKGDDHFPTTRLICL  143 (353)
T ss_pred             HHHH--HHHHccCCCCeEEEcCccceehhcccchhhhcCceeEecCCC--cCCCcCHHHHHHHHHhccCCCCCcceEEEE
Confidence            6655  333456 99999999999854333   567789999999873  45679999999999731    025677776


Q ss_pred             CC-CCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcc
Q 012647          236 GC-AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIG  314 (459)
Q Consensus       236 ~~-p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG  314 (459)
                      ++ +|||||.+++.+++++|.++|++||+++|+|++|..........   ....+....  ..++.|+||.++.   ++|
T Consensus       144 ~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~---~~~~~~~~~--d~~~~s~sK~l~~---~~G  215 (353)
T PLN02721        144 ENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGV---PVHRLVKAA--DSVSVCLSKGLGA---PVG  215 (353)
T ss_pred             eccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCC---CHHHHhhhC--CEEEEecccccCC---cee
Confidence            55 68999999999999999999999999999999975221100001   111222222  3445589999874   367


Q ss_pred             eEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 012647          315 AMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG  394 (459)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  394 (459)
                      |+  +..+++.++.+.....    ....++...++.++..+.   .+    ++.+++++ +..++++.+.+.|+ +++. 
T Consensus       216 ~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~l----~~~~~~~~-~~~~~~~~l~~~L~-~~~~-  279 (353)
T PLN02721        216 SV--IVGSKSFIRKAKRLRK----TLGGGMRQVGVLAAAALV---AL----QENVPKLE-DDHKKAKLLAEGLN-QIKG-  279 (353)
T ss_pred             eE--EecCHHHHHhHHHHHH----hcCCCeehhHHHHHHHHH---HH----HHHHHHHH-HHHHHHHHHHHHHH-hCCC-
Confidence            64  2347775544332211    111122222222221111   11    12233333 33556788999998 7631 


Q ss_pred             CCcc--cccCCcceeeecCC------CH-HHHHHHHhcccEEEcCCC----cEEEc-cCChhhHHHHHHHHHHHHhh
Q 012647          395 KDWS--FILRQIGMFSFTGL------NK-AQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       395 ~~~~--~~~~~~g~f~~~~l------~~-~~~~~ll~~~gI~v~~gg----Ris~~-~~~~e~i~~~~~~l~~~~~~  457 (459)
                        +.  +..+.++ |+|+.+      +. ++.++|. ++||.+.+++    |++++ ..+++++++++++|++++..
T Consensus       280 --~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~-~~gi~v~~~~~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~  352 (353)
T PLN02721        280 --LRVNVAAVETN-IVYFDITDGSRITAEKLCKSLE-EHGVLLMPGNSSRIRVVTHHQISDSDVQYTLSCFQQAALT  352 (353)
T ss_pred             --cEEecCCccce-EEEEEccCCccccHHHHHHHHH-hCCcEEecCCCceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence              32  2344444 566533      23 3455665 5799999986    99986 44899999999999998764

>PLN02483 serine palmitoyltransferase

Probab=99.96  E-value=9.4e-27  Score=236.50  Aligned_cols=335  Identities=12%  Similarity=0.023  Sum_probs=218.2

Q ss_pred             CCCceeecccccCCCCCC-ccCcHHHHHHHHHHhhc--CCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           82 DEKKLNLGVGAYRTEELQ-PYVLDVVKKAENLMLER--GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~-~~~~~~v~~a~~~~~~~--~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      ...++||+.-.|+.-... +.+.+.+.+++.+.-..  .....|++..+..++++++|+++..       ++.|++  ++
T Consensus        99 ~~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~-------~~ai~~--~~  169 (489)
T PLN02483         99 TRRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGK-------PAAIVF--GM  169 (489)
T ss_pred             CceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCC-------CcEEEE--CC
Confidence            346899999888654322 22356777777665321  1224487888999999999999753       566777  55


Q ss_pred             cchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC----CCC-----
Q 012647          159 SGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA----PGG-----  229 (459)
Q Consensus       159 ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~----~~~-----  229 (459)
                      | ..++..+  +...+.+||.|++++|+|..+...++..|++++.++..       |.+.+++.+++.    .++     
T Consensus       170 G-~~an~~~--i~al~~~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-------d~~~le~~l~~~i~~~~p~t~~p~  239 (489)
T PLN02483        170 G-YATNSTI--IPALIGKGGLIISDSLNHNSIVNGARGSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTHRPW  239 (489)
T ss_pred             H-HHHHHHH--HHHhCCCCCEEEEcchhhHHHHHHHHHcCCeEEEEeCC-------CHHHHHHHHHhhhhccccccccCC
Confidence            4 4444444  34457899999999999999999999999999999863       445555555421    111     


Q ss_pred             -cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh--cCCeEEEEEcCCcCc
Q 012647          230 -SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT--RGMELLVAQSYSKNL  306 (459)
Q Consensus       230 -~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~  306 (459)
                       ..++++....|++|.+   .++++|+++|++||+++|+||+|.....+.   .......+..  ..+.+++++||||.|
T Consensus       240 ~k~livve~v~s~~G~~---~~l~~I~~la~~~~~~livDEa~s~g~~G~---~G~g~~~~~~v~~~~~dI~~~SfSKs~  313 (489)
T PLN02483        240 KKIIVIVEGIYSMEGEL---CKLPEIVAVCKKYKAYVYLDEAHSIGAVGK---TGRGVCELLGVDPADVDIMMGTFTKSF  313 (489)
T ss_pred             ceEEEEECCCCCCCCcc---cCHHHHHHHHHHcCCEEEEECcCccCccCC---CCCchHHhcCCCcccCcEEEEecchhc
Confidence             2355566677999999   788899999999999999999986332221   1111112222  235689999999999


Q ss_pred             ccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHH--HHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          307 GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVA--NVVGNPALFDEWKAEMEMMAGRIKNVRQKLF  384 (459)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~  384 (459)
                      |++|   ||+++   +++.++.+...... .......++...|.+++  ..+.+.+-    .+...+.+++++++++++.
T Consensus       314 g~~G---G~i~~---~~~li~~l~~~~~~-~~~~~~~~p~~~~~~~aaL~~l~~~~g----~~~~~~~~~~l~~~~~~l~  382 (489)
T PLN02483        314 GSCG---GYIAG---SKELIQYLKRTCPA-HLYATSMSPPAVQQVISAIKVILGEDG----TNRGAQKLAQIRENSNFFR  382 (489)
T ss_pred             ccCc---eEEEc---CHHHHHHHHHhCcc-ccccCCcCHHHHHHHHHHHHHHHhCcc----ccchHHHHHHHHHHHHHHH
Confidence            9887   99865   88855444332110 00111123333333322  22221110    0113455788999999999


Q ss_pred             HHHhhccCCCCCcccccCCcceeeec--CC---CHHHHHHHHhcccEEEcCC---------C--cEEEcc-CChhhHHHH
Q 012647          385 DSLSAKDKSGKDWSFILRQIGMFSFT--GL---NKAQSDNMTNKWHVYMTKD---------G--RISLAG-LSLAKCEYL  447 (459)
Q Consensus       385 ~~L~~~~g~~~~~~~~~~~~g~f~~~--~l---~~~~~~~ll~~~gI~v~~g---------g--Ris~~~-~~~e~i~~~  447 (459)
                      +.|+ ++|    +.+..+.++..+|+  ..   ..++.+.|++ +||.+++.         +  ||+++. .++|+++++
T Consensus       383 ~~L~-~~G----~~v~~~~~sp~~~l~l~~~~~~~~~~~~Ll~-~GI~v~~~~fp~~p~~~~~vRi~isa~~t~edId~~  456 (489)
T PLN02483        383 SELQ-KMG----FEVLGDNDSPVMPIMLYNPAKIPAFSRECLK-QNVAVVVVGFPATPLLLARARICISASHSREDLIKA  456 (489)
T ss_pred             HHHH-HCC----CcccCCCCCCEEEEEECCHHHHHHHHHHHHH-CCcEEeeeCCCCCCCCCceEEEEeCCCCCHHHHHHH
Confidence            9999 887    45554444433332  21   2356777777 59998742         1  888875 389999999


Q ss_pred             HHHHHHHHhhc
Q 012647          448 ADAIIDSYHNV  458 (459)
Q Consensus       448 ~~~l~~~~~~~  458 (459)
                      +++|+++++.+
T Consensus       457 l~~L~~~~~~~  467 (489)
T PLN02483        457 LEVISEVGDLV  467 (489)
T ss_pred             HHHHHHHHHHh
Confidence            99999988754

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.96  E-value=1.2e-26  Score=230.73  Aligned_cols=332  Identities=13%  Similarity=0.059  Sum_probs=215.7

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC--CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...|||..|.+.+..+.  .+|.+.+++.+.+....  ...| +..-..+|.+.+++++    +    .+++++  ++|
T Consensus        26 g~~~id~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~----g----~~~~~~--~~s   92 (379)
T TIGR00707        26 GKEYLDFVAGIAVNSLGH--AHPKLVEALKEQLEKLVHVSNLY-YTEPQEELAEKLVEHS----G----ADRVFF--CNS   92 (379)
T ss_pred             CCEEEEcCcchhhccCCC--CCHHHHHHHHHHHhhcccccccc-CCHHHHHHHHHHHhhC----C----CCEEEE--eCC
Confidence            346899999865344443  36889999888775421  1234 3444566666677664    2    247888  999


Q ss_pred             chhHHHHHHHHHHHhC-----CCCEEEEcCCCCcchHHHhhhCCCCeee----eeeecCCCCC--CCHHHHHHHHHcCCC
Q 012647          160 GTGSLRLAAALIERYF-----PGAKVLISSPTWGNHKNIFNDARVPWSE----YRYYDPKTVG--LDFEGMIADIKAAPG  228 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~-----~gd~Vlv~~p~y~~~~~~~~~~G~~v~~----v~~~~~~~~~--~d~e~l~~~i~~~~~  228 (459)
                      |++++.++.+++..+.     +||+|++++|+|..+.......+.....    .++..+..+.  .|++.+++.+++   
T Consensus        93 g~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---  169 (379)
T TIGR00707        93 GAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDD---  169 (379)
T ss_pred             cHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhh---
Confidence            9999999866554332     3799999999998887666655543321    2221111111  189999998875   


Q ss_pred             CcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc
Q 012647          229 GSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (459)
Q Consensus       229 ~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (459)
                      ++++++++.++||+|.. ++.+++++|.++|++||+++|+||+|.++++.+   ...... .....++++   +|||.++
T Consensus       170 ~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g---~~~~~~-~~~~~~d~~---t~sK~~~  242 (379)
T TIGR00707       170 ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTG---KFFAYE-HYGIEPDII---TLAKGLG  242 (379)
T ss_pred             CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc---hhhhHH-hcCCCCCEE---EEccccc
Confidence            56777777677777764 789999999999999999999999998886532   111111 122233433   7899999


Q ss_pred             cCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          308 LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSL  387 (459)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  387 (459)
                       +|+|+||+++   +++    +++.+.........+.+.++|.++...|+.-.        -....++++++++++.+.|
T Consensus       243 -~G~riG~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~--------~~~~~~~~~~~~~~~~~~l  306 (379)
T TIGR00707       243 -GGVPIGATLA---KEE----VAEAFTPGDHGSTFGGNPLACAAALAVLEVIE--------KERLLENVKEKGDYFKERL  306 (379)
T ss_pred             -CCcccEEEEE---cHH----HHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHHHH
Confidence             9999999866   777    44444433222233566777777766553110        0234566667777777777


Q ss_pred             hhccCCCCCcccccCCcceeeecCC--CH-HHHHHHHhcccEEEcCCC----cEEEcc-CChhhHHHHHHHHHHHH
Q 012647          388 SAKDKSGKDWSFILRQIGMFSFTGL--NK-AQSDNMTNKWHVYMTKDG----RISLAG-LSLAKCEYLADAIIDSY  455 (459)
Q Consensus       388 ~~~~g~~~~~~~~~~~~g~f~~~~l--~~-~~~~~ll~~~gI~v~~gg----Ris~~~-~~~e~i~~~~~~l~~~~  455 (459)
                      + +++....+....+ .|.|+|+.+  +. ++.+.|.+ +||.+.|++    ||+++. .+++++++++++|++++
T Consensus       307 ~-~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~  379 (379)
T TIGR00707       307 E-ELGKNYPNKEVRG-KGLMLGIELEAPCKDIVKKALE-KGLLVNCAGPKVLRFLPPLIITKEEIDEAVSALEEAI  379 (379)
T ss_pred             H-HHHhhCCCCcccc-CceEEEEEecCcHHHHHHHHHH-CCcEEeeCCCCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence            6 5432111222223 466666644  23 44555554 699999875    888653 48999999999998764

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.96  E-value=1.4e-26  Score=232.21  Aligned_cols=330  Identities=13%  Similarity=0.076  Sum_probs=221.8

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCC--C--CCC----CCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--K--EYL----PIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~--~Y~----~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (459)
                      +++-|..|.      ..++|+.+.+++.+.+.....  .  .+.    ....++++|+.++++++...     +++|++ 
T Consensus        18 ~~~yld~~~------~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~-----~~~v~~-   85 (403)
T TIGR01979        18 PLVYLDSAA------TSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAAS-----DEEIVF-   85 (403)
T ss_pred             ceEEEeCcc------ccCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCC-----CCeEEE-
Confidence            456666554      334588899999887643210  1  011    12356799999999975531     578999 


Q ss_pred             ecccchhHHHHHHHHHH--HhCCCCEEEEcCCCCcc----hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCC
Q 012647          156 QGLSGTGSLRLAAALIE--RYFPGAKVLISSPTWGN----HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (459)
Q Consensus       156 ~t~ggt~a~~l~~~~~~--~~~~gd~Vlv~~p~y~~----~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~  229 (459)
                       |.|+++++++++..+.  .+.+||+|+++++.|+.    +....+..|++++.+|.+  +++.+|++.+++++++   +
T Consensus        86 -~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~i~~---~  159 (403)
T TIGR01979        86 -TRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLD--DDGTLDLDDLEKLLTE---K  159 (403)
T ss_pred             -eCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecC--CCCCCCHHHHHHHhcc---C
Confidence             9999999998744332  24689999999998764    345566789999999984  4577999999999976   7


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccC
Q 012647          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (459)
Q Consensus       230 ~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  309 (459)
                      ++++++++++||||.+++   +++|.++|+++|+++++|++|.... .+.     .    +...+.++++.|++|.+|++
T Consensus       160 ~~lv~~~~~~~~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~g~-~~~-----~----~~~~~~d~~~~s~~K~~gp~  226 (403)
T TIGR01979       160 TKLVAITHVSNVLGTVNP---VEEIAKLAHQVGAKVLVDGAQAVPH-MPV-----D----VQALDCDFYVFSGHKMYGPT  226 (403)
T ss_pred             CeEEEEEcccccccccCC---HHHHHHHHHHcCCEEEEEchhhcCc-ccc-----C----ccccCCCEEEEecccccCCC
Confidence            888999999999999955   7789999999999999999965332 111     1    12224578999999999977


Q ss_pred             CCCcceEEEEeCChhHHHHHHHHHHhh-----------------ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHH
Q 012647          310 AERIGAMNVVCSSSDLAARVKSQLKRL-----------------ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMM  372 (459)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~  372 (459)
                      |  +|++++   +++..+.+.......                 .+...+.++.....++...++   +..  ...++++
T Consensus       227 G--~g~l~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~---~~~--~~g~~~~  296 (403)
T TIGR01979       227 G--IGVLYG---KEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAID---YLE--AIGLENI  296 (403)
T ss_pred             C--ceEEEE---chHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHH---HHH--HhCHHHH
Confidence            7  899876   666433321000000                 000011233333333333221   110  1124677


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCcccccCC-----cceeeec--CCCHHHHHHHHhcccEEEcCC--------------
Q 012647          373 AGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ-----IGMFSFT--GLNKAQSDNMTNKWHVYMTKD--------------  431 (459)
Q Consensus       373 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~-----~g~f~~~--~l~~~~~~~ll~~~gI~v~~g--------------  431 (459)
                      +++..++++++.+.|+ +++   ++++..+.     ++++.|.  +.+...+...++++||.+.+|              
T Consensus       297 ~~~~~~l~~~l~~~l~-~~~---g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~~  372 (403)
T TIGR01979       297 EAHEHELTAYALERLG-EIP---GLRIYGPRDAEDRGGIISFNVEGVHPHDVGTILDEEGIAVRSGHHCAQPLMRRFGVP  372 (403)
T ss_pred             HHHHHHHHHHHHHHHh-cCC---CEEEeCCCCccccCceEEEEeCCcCHHHHHHHHhhCCEEEcchhhhhHHHHHHhCCC
Confidence            8888999999999998 763   15555443     5555442  445555555666789998753              


Q ss_pred             C--cEEEccC-ChhhHHHHHHHHHHHHhhc
Q 012647          432 G--RISLAGL-SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       432 g--Ris~~~~-~~e~i~~~~~~l~~~~~~~  458 (459)
                      |  |||++.. +++|+++++++|+++++.+
T Consensus       373 ~~iRiS~~~~~t~~di~~l~~~l~~~~~~~  402 (403)
T TIGR01979       373 ATCRASFYIYNTEEDIDALVEALKKVRKFF  402 (403)
T ss_pred             CEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence            2  9998865 7899999999999988765

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.96  E-value=1.7e-26  Score=225.97  Aligned_cols=308  Identities=16%  Similarity=0.031  Sum_probs=210.8

Q ss_pred             cHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEE
Q 012647          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLI  182 (459)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv  182 (459)
                      ++.+.+++.+.....  ..|.+.....++++.++++++        ++++++  +.||++++.++.  ...+.+||+|++
T Consensus        11 ~~~v~~a~~~~~~~~--~~~~~~~~~~~l~~~~a~~~g--------~~~~~~--~~~gt~a~~~~~--~~l~~~gd~v~~   76 (338)
T cd06502          11 TPEMLEAMAAANVGD--DVYGEDPTTAKLEARAAELFG--------KEAALF--VPSGTAANQLAL--AAHTQPGGSVIC   76 (338)
T ss_pred             CHHHHHHHHhcccCC--cccCCCHHHHHHHHHHHHHhC--------CCeEEE--ecCchHHHHHHH--HHhcCCCCeEEE
Confidence            789999998865322  367777888999999999864        245667  788999988873  334679999999


Q ss_pred             cCCCCcchHH---HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCC----CCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 012647          183 SSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP----GGSFILLHGCAHNPTGIDPTPEQWEKIA  255 (459)
Q Consensus       183 ~~p~y~~~~~---~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~----~~~~~ii~~~p~NPTG~~~s~~~l~~i~  255 (459)
                      +.|+|..+..   ..+..|++++.+|.+  . +.+|++++++++++..    ++++++++++|||| |.+++.+++++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~  152 (338)
T cd06502          77 HETAHIYTDEAGAPEFLSGVKLLPVPGE--N-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAIS  152 (338)
T ss_pred             ecCcceeeecCCcHHHHcCceEEeecCC--C-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHH
Confidence            9999875432   344589999999873  2 6799999999997521    25788889999998 6677999999999


Q ss_pred             HHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHh
Q 012647          256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKR  335 (459)
Q Consensus       256 ~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~  335 (459)
                      ++|++||+++|+||+|..........   .+... ....+ +++.|+||.|+++|   |++  +..+++.++.+......
T Consensus       153 ~~~~~~~~~livDea~~~~~~~~~~~---~~~~~-~~~~d-~~~~s~sK~~~~~~---g~~--~~~~~~~~~~~~~~~~~  222 (338)
T cd06502         153 ALAKENGLPLHLDGARLANAAAALGV---ALKTY-KSGVD-SVSFCLSKGGGAPV---GAV--VVGNRDFIARARRRRKQ  222 (338)
T ss_pred             HHHHHcCCeEeechHHHHHHHHhcCC---CHHHH-HhcCC-EEEEeccccCCCcc---ceE--EECCHHHHHHHHHHHHH
Confidence            99999999999999975432110001   11111 12223 56889999999887   654  23477755555433221


Q ss_pred             hccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeee-cCCCH
Q 012647          336 LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF-TGLNK  414 (459)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~-~~l~~  414 (459)
                      .  ....+.+.+.+.++...|++..+        .+..+++.++++++.+.|+ ++|    +.+..+.++++++ ...+.
T Consensus       223 ~--~~~~~~~~~~~~a~~~~L~~~~~--------~~~~~~~~~~~~~l~~~L~-~~~----~~~~~~~~~~~~v~~~~~~  287 (338)
T cd06502         223 A--GGGMRQSGFLAAAGLAALENDLW--------LRRLRHDHEMARRLAEALE-ELG----GLESEVQTNIVLLDPVEAN  287 (338)
T ss_pred             h--CCChhhHHHHHHHHHHHhcCchH--------HHHHHHHHHHHHHHHHHHH-hcC----CCcccccCCeEEEecCCcc
Confidence            1  11123455666666667765432        2445677777899999999 887    3555566665432 22222


Q ss_pred             HHHHHHHh------cccEEEcCCC----cEEEccC-ChhhHHHHHHHHHH
Q 012647          415 AQSDNMTN------KWHVYMTKDG----RISLAGL-SLAKCEYLADAIID  453 (459)
Q Consensus       415 ~~~~~ll~------~~gI~v~~gg----Ris~~~~-~~e~i~~~~~~l~~  453 (459)
                      .....+++      ++||.+.+.+    ||+.+.. ++++++++++++++
T Consensus       288 ~~~~~l~~~l~~~~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~  337 (338)
T cd06502         288 AVFVELSKEAIERRGEGVLFYAWGEGGVRFVTHWDTTEEDVDELLSALKA  337 (338)
T ss_pred             HHHHHHHHHHHHhhhCCEEEEecCCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence            33333332      4699887653    9988755 88999999999865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.96  E-value=1.2e-26  Score=232.16  Aligned_cols=333  Identities=13%  Similarity=0.034  Sum_probs=216.8

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...|||..|.+-+..+.  -.|.+.+++.+.+....   +....+..++++.+++++....+    .+++++  ++||+
T Consensus        38 g~~~iD~~~g~~~~~lG~--~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~la~~l~~~~~----~~~v~~--~~gg~  106 (396)
T PRK02627         38 GKEYLDFLAGIAVNNLGH--CHPKLVEAIQEQAAKLI---HTSNLYYIEPQEELAEKLVELSG----MDKVFF--CNSGA  106 (396)
T ss_pred             CCEEEECCccHHhccCCC--CCHHHHHHHHHHHhhcc---ccccccCCHHHHHHHHHHHhhcC----CCEEEE--CCCcH
Confidence            357899999877333333  25889999888775421   11112235677777777765543    478999  99999


Q ss_pred             hHHHHHHHHHHHhCC-----CCEEEEcCCCCcchHHHhhhCCCCee----eeeeecCCCC----CCCHHHHHHHHHcCCC
Q 012647          162 GSLRLAAALIERYFP-----GAKVLISSPTWGNHKNIFNDARVPWS----EYRYYDPKTV----GLDFEGMIADIKAAPG  228 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~-----gd~Vlv~~p~y~~~~~~~~~~G~~v~----~v~~~~~~~~----~~d~e~l~~~i~~~~~  228 (459)
                      +|+.++.+++.....     .++|++..++|.++.......+....    ..++.  .++    ..|++.+++.+.+   
T Consensus       107 eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~l~~~i~~---  181 (396)
T PRK02627        107 EANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLV--EGFIYVPFNDIEALKAAITD---  181 (396)
T ss_pred             HHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCC--CCceEeCCCCHHHHHHhcCC---
Confidence            999999776543332     17899999999877655444332211    11111  111    1289999998864   


Q ss_pred             CcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc
Q 012647          229 GSFILLHGCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (459)
Q Consensus       229 ~~~~ii~~~p~NPTG-~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (459)
                      +++++++++++||+| .+++++.+++|.++|++||+++|+||+|.++++.+   ..++... ....+++   .+|||.++
T Consensus       182 ~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g---~~~~~~~-~~~~pdi---~t~sK~~~  254 (396)
T PRK02627        182 KTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTG---KLFAYQH-YGIEPDI---MTLAKGLG  254 (396)
T ss_pred             CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccC---ceeeehh-cCCCCCE---EEEcchhh
Confidence            678888888899999 68899999999999999999999999999887542   1112111 1222333   37999999


Q ss_pred             cCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          308 LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSL  387 (459)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  387 (459)
                       +|+|+||+++   +++    +.+.+.......+.+.+.++|.++...|+....        +...++++++.+.+.+.|
T Consensus       255 -~G~rig~~~~---~~~----~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~--------~~~~~~~~~~~~~~~~~l  318 (396)
T PRK02627        255 -GGVPIGAVLA---KEK----VADVFTPGDHGSTFGGNPLACAAALAVIEIIEE--------EGLLENAAEVGEYLRAKL  318 (396)
T ss_pred             -CCcccEEEEE---cHH----HHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhh--------ccHHHHHHHHHHHHHHHH
Confidence             9999999976   777    344443322233346677788887766653211        122333344444444444


Q ss_pred             hh---ccCCCCCcccccCCcceeeecCC---CHHHHHHHHhcccEEEcCCC----cEEEc-cCChhhHHHHHHHHHHHHh
Q 012647          388 SA---KDKSGKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       388 ~~---~~g~~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~gg----Ris~~-~~~~e~i~~~~~~l~~~~~  456 (459)
                      .+   +++.   +..+.. .|.++|+.+   ..+++++++++ ||.+.|++    ||+++ ..+++++++++++|+++++
T Consensus       319 ~~~~~~~~~---~~~~~~-~g~~~~i~~~~~~~~~~~~l~~~-Gv~v~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~l~  393 (396)
T PRK02627        319 RELLEKYPG---IKEVRG-LGLMIGIELDRPAAEIVKKALEK-GLLINVTGDNVLRLLPPLIISKEEIDEAVDRLEEVLK  393 (396)
T ss_pred             HHHHHhCCC---eeeecc-CcEEEEEEecCcHHHHHHHHHHC-CeEEeecCCCEEEEECCcccCHHHHHHHHHHHHHHHH
Confidence            30   3321   222223 466777754   24567777775 99999875    88764 3489999999999999987


Q ss_pred             hc
Q 012647          457 NV  458 (459)
Q Consensus       457 ~~  458 (459)
                      ++
T Consensus       394 ~~  395 (396)
T PRK02627        394 EL  395 (396)
T ss_pred             hh
Confidence            64

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.96  E-value=1.6e-26  Score=228.51  Aligned_cols=289  Identities=12%  Similarity=0.028  Sum_probs=194.4

Q ss_pred             cHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeee
Q 012647          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY  207 (459)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~  207 (459)
                      +.++++.+|+++..        +.+.+  ++|+++++..+  +...+.+||+|+++.+.|......++..|++++.+|.+
T Consensus        53 ~~~~~e~lA~~~g~--------~~~~i--~~g~~~a~~~~--~~~l~~~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~  120 (370)
T TIGR02539        53 IHDFLEDLAEFLGM--------DEARV--THGAREGKFAV--MHALCKEGDWVVLDGLAHYTSYVAAERAGLNVKEVPHT  120 (370)
T ss_pred             HHHHHHHHHHHhCC--------CceEE--ECChHHHHHHH--HHHhhCCCCEEEECCcccHHHHHHHHHcCCEEEEEecC
Confidence            56888999999643        34556  79999999988  44446799999999888655446778999999999986


Q ss_pred             cCCCCCCCHHHHHHHHHcCC----CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCCh
Q 012647          208 DPKTVGLDFEGMIADIKAAP----GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA  283 (459)
Q Consensus       208 ~~~~~~~d~e~l~~~i~~~~----~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~  283 (459)
                      ++.++.+|++++++.+++..    ++++++++++|+||||..   .++++|+++|+++|+++|+||+|.....+   .+ 
T Consensus       121 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~---~~l~~i~~la~~~~~~livDea~~~g~~~---~~-  193 (370)
T TIGR02539       121 GHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNL---PDAGKVAKVCREKGVPLLLNCAYTVGRMP---VS-  193 (370)
T ss_pred             CcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccc---cCHHHHHHHHHHcCCeEEEECccccCCcC---CC-
Confidence            44568899999999986411    256788889999999998   66778999999999999999998764321   11 


Q ss_pred             hHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhcc----ccccCCchHHHHHHHHHhCCh
Q 012647          284 SSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLAR----PMYSNPPVHGARIVANVVGNP  359 (459)
Q Consensus       284 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~L~~~  359 (459)
                        ..    ..+..++++||||.++ +|.|+||+++   +++.++.+.........    .........++.++...+.+ 
T Consensus       194 --~~----~~~~di~v~s~sK~~~-~~g~~G~l~~---~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-  262 (370)
T TIGR02539       194 --AK----EIGADFIVGSGHKSMA-ASGPCGVLGM---SEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPH-  262 (370)
T ss_pred             --HH----HcCCCEEEeeCccccc-CCCCEEEEEE---CHHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHH-
Confidence              11    1124567799999999 5778999976   77855554432211000    00011111122223223321 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc--cCCcceeeecCCC------------H-HHHHHHHhcc
Q 012647          360 ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI--LRQIGMFSFTGLN------------K-AQSDNMTNKW  424 (459)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~--~~~~g~f~~~~l~------------~-~~~~~ll~~~  424 (459)
                           +.+.++...+.++. ++++.+.|+ ++|    ++.+  .+..+.|+++...            . .+.++|.+ +
T Consensus       263 -----~~~~l~~~~~~~~~-~~~l~~~L~-~~g----~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e-~  330 (370)
T TIGR02539       263 -----VVERVKRWDEEVKK-TRWFVAELE-DIG----FIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKK-R  330 (370)
T ss_pred             -----HHHHHHHHHHHHHH-HHHHHHHHH-hCC----cEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHh-C
Confidence                 12334445555555 458999999 887    4532  2344556655321            1 23445554 6


Q ss_pred             cEE-EcCCC----cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          425 HVY-MTKDG----RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       425 gI~-v~~gg----Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      ||. ++++.    ||++.+.+++++++++++|+++++++
T Consensus       331 GI~~ir~~~~~~iRis~~~~t~e~i~~l~~~L~~~~~~~  369 (370)
T TIGR02539       331 GIHGIRSGQTKYFKLSVYGLTKEQVEYVVDSFEEIVEEY  369 (370)
T ss_pred             CCccccCCcceEEEEEecCCCHHHHHHHHHHHHHHHHhc
Confidence            997 77753    88864449999999999999998764

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.96  E-value=1.8e-26  Score=232.57  Aligned_cols=331  Identities=15%  Similarity=0.100  Sum_probs=219.2

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCC--C---CCC---CcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK--E---YLP---IEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~--~---Y~~---~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (459)
                      +.+.|..+..      .+.++.|.+++.+.+......  .   |..   ...++++|+.++++++..     ++++|++ 
T Consensus        32 ~~iyLd~a~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-----~~~~v~~-   99 (424)
T PLN02855         32 KLVYLDNAAT------SQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINAS-----TSREIVF-   99 (424)
T ss_pred             CeEEeeCccc------cCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCC-----CCCEEEE-
Confidence            3566665543      345888999998876432101  1   110   123568999999997653     1578999 


Q ss_pred             ecccchhHHHHHHHHHH--HhCCCCEEEEcCCCCcc----hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCC
Q 012647          156 QGLSGTGSLRLAAALIE--RYFPGAKVLISSPTWGN----HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (459)
Q Consensus       156 ~t~ggt~a~~l~~~~~~--~~~~gd~Vlv~~p~y~~----~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~  229 (459)
                       |.|+|++++++...+.  .+.+||+|+++++.|+.    |...++..|++++.+|++  .++.+|++.+++.+++   +
T Consensus       100 -t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~--~~~~~~~~~l~~~i~~---~  173 (424)
T PLN02855        100 -TRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLT--PDEVLDVEQLKELLSE---K  173 (424)
T ss_pred             -eCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecC--CCCCcCHHHHHHHhcc---C
Confidence             9999999999854332  35689999999997763    455667789999999984  3456999999999975   7


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccC
Q 012647          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (459)
Q Consensus       230 ~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  309 (459)
                      ++++++++++||||.+++   +++|+++|+++|+++++|++|. ++....     .    +...+.++++.|++|.+|++
T Consensus       174 t~lv~i~~~~n~tG~~~~---~~~I~~l~~~~g~~vivD~a~~-~g~~~~-----~----~~~~~~d~~~~s~~K~~gp~  240 (424)
T PLN02855        174 TKLVATHHVSNVLGSILP---VEDIVHWAHAVGAKVLVDACQS-VPHMPV-----D----VQTLGADFLVASSHKMCGPT  240 (424)
T ss_pred             ceEEEEeCccccccccCC---HHHHHHHHHHcCCEEEEEhhhh-cCCcCC-----C----chhcCCCEEEeecccccCCC
Confidence            889999999999999965   5678999999999999999964 322111     1    12223467899999998877


Q ss_pred             CCCcceEEEEeCChhHHHHHHHHHHhh----------------ccccccCCchHHHHHH-HHHhCChhhHHHHHHHHHHH
Q 012647          310 AERIGAMNVVCSSSDLAARVKSQLKRL----------------ARPMYSNPPVHGARIV-ANVVGNPALFDEWKAEMEMM  372 (459)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~-~~~L~~~~~~~~~~~~~~~~  372 (459)
                      |  +||+++   +++.++.+.......                ......+.+.+...++ ...++   +..  +..++++
T Consensus       241 G--~G~l~~---~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~---~~~--~~g~~~i  310 (424)
T PLN02855        241 G--IGFLWG---KSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAID---YLS--EIGMDRI  310 (424)
T ss_pred             c--cEEEEE---chhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHH---HHH--HhCHHHH
Confidence            7  899977   666443321110000                0001112233332222 22221   111  1246788


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCcccccC-------Ccceeee--cCCCHHHH-HHHHhcccEEEcCC-----------
Q 012647          373 AGRIKNVRQKLFDSLSAKDKSGKDWSFILR-------QIGMFSF--TGLNKAQS-DNMTNKWHVYMTKD-----------  431 (459)
Q Consensus       373 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~-------~~g~f~~--~~l~~~~~-~~ll~~~gI~v~~g-----------  431 (459)
                      +++.+++++++++.|+ ++.   +++++.+       .++++.+  .+.+.+.+ ..|.+++||.++.|           
T Consensus       311 ~~~~~~l~~~l~~~L~-~~~---g~~i~~~~~~~~~~r~~~v~~~~~~~~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~  386 (424)
T PLN02855        311 HEYEVELGTYLYEKLS-SVP---GVRIYGPKPSEGVGRAALCAFNVEGIHPTDLSTFLDQQHGVAIRSGHHCAQPLHRYL  386 (424)
T ss_pred             HHHHHHHHHHHHHHHh-cCC---CEEEeCCCcccccCcccEEEEEECCcCHHHHHHHhcccCCEEEechhhhhHHHHHHh
Confidence            8899999999999998 762   1444432       2344433  24555544 45545459998853           


Q ss_pred             ---C--cEEEccC-ChhhHHHHHHHHHHHHhhcC
Q 012647          432 ---G--RISLAGL-SLAKCEYLADAIIDSYHNVS  459 (459)
Q Consensus       432 ---g--Ris~~~~-~~e~i~~~~~~l~~~~~~~~  459 (459)
                         +  |||+..+ +++|+++++++|++++++++
T Consensus       387 g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~~  420 (424)
T PLN02855        387 GVNASARASLYFYNTKEEVDAFIHALKDTIAFFS  420 (424)
T ss_pred             CCCCeEEEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence               1  9999766 88999999999999987653

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.95  E-value=6.6e-26  Score=227.44  Aligned_cols=327  Identities=15%  Similarity=0.100  Sum_probs=216.0

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCC------CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEee
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN------KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~------~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (459)
                      ...++|+...|+   +... +|.+++++.+.++....      ..|.......+|++.+++++..       ++.|++  
T Consensus        46 ~~~~~~~sn~yl---~l~~-~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~-------~~~i~~--  112 (410)
T PRK13392         46 RRVTIWCSNDYL---GMGQ-HPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGK-------ESALLF--  112 (410)
T ss_pred             ceEEEEECCCcc---CCCC-CHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCC-------CCEEEE--
Confidence            457888886662   3433 78899999887754210      1232233467899999999642       456666  


Q ss_pred             cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC-CCCcEEEEe
Q 012647          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA-PGGSFILLH  235 (459)
Q Consensus       157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~-~~~~~~ii~  235 (459)
                      ++ |++++..+...+..+.+||.|++..+.|..+...++..|+++..++..       |++.+++.++.. .++++++++
T Consensus       113 ~s-G~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~t~~v~i  184 (410)
T PRK13392        113 TS-GYVSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRHN-------DLADLEEQLASVDPDRPKLIAF  184 (410)
T ss_pred             Cc-HHHHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeCC-------CHHHHHHHHHhccCCCCEEEEE
Confidence            54 566766664333223488988887777777777778889887766531       455666666532 246889999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC-eEEEEEcCCcCcccCCCCcc
Q 012647          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM-ELLVAQSYSKNLGLYAERIG  314 (459)
Q Consensus       236 ~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~S~SK~~~~~G~RiG  314 (459)
                      ++|+||||.+++   +++|.++|++||+++|+||+|....++..   ...+.......+ ..++++||||.||++|   |
T Consensus       185 ~~~~n~tG~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~---g~g~~~~~~~~~~~div~~tlsK~~g~~G---G  255 (410)
T PRK13392        185 ESVYSMDGDIAP---IEAICDLADRYNALTYVDEVHAVGLYGAR---GGGIAERDGLMDRIDMIQGTLAKAFGCLG---G  255 (410)
T ss_pred             eCCCCCCccccc---HHHHHHHHHHcCCEEEEECCccccCcCCC---CCchhhhccCCCCCcEEEEEChHhhhccc---c
Confidence            999999999965   77899999999999999999873332211   111111111112 2488899999999988   8


Q ss_pred             eEEEEeCChhHHHHHHHHHHhhcccc--ccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          315 AMNVVCSSSDLAARVKSQLKRLARPM--YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                      |+++   +++.++.+.    ......  ....+..++.++...|+...       .....+++++++++++.+.|+ ++|
T Consensus       256 ~~~~---~~~~~~~l~----~~~~~~~~s~~~~~~~~~a~~aaL~~~~-------~~~~~~~~~~~~~~~l~~~L~-~~g  320 (410)
T PRK13392        256 YIAA---SADLIDFVR----SFAPGFIFTTALPPAVAAGATAAIRHLK-------TSQTERDAHQDRVAALKAKLN-ANG  320 (410)
T ss_pred             hhhc---CHHHHHHHH----HhCcchhccCcCCHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHHHHHHHHH-HcC
Confidence            8854   777444433    322221  22334455555555554221       123455778889999999999 887


Q ss_pred             CCCCcccccCCccee-eecCCC---HHHHHHHHhcccEEEcCC-------C----cEEEccC-ChhhHHHHHHHHHHHHh
Q 012647          393 SGKDWSFILRQIGMF-SFTGLN---KAQSDNMTNKWHVYMTKD-------G----RISLAGL-SLAKCEYLADAIIDSYH  456 (459)
Q Consensus       393 ~~~~~~~~~~~~g~f-~~~~l~---~~~~~~ll~~~gI~v~~g-------g----Ris~~~~-~~e~i~~~~~~l~~~~~  456 (459)
                          +++.+++++++ ++++..   .++.++|++++||.+.+.       |    ||++... +++++++++++|.++.+
T Consensus       321 ----~~~~~~~~~~~~i~~~~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~  396 (410)
T PRK13392        321 ----IPVMPSPSHIVPVMVGDPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIWD  396 (410)
T ss_pred             ----CCCCCCCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence                56666777765 555542   245667876679998753       2    8887533 89999999999999887


Q ss_pred             hc
Q 012647          457 NV  458 (459)
Q Consensus       457 ~~  458 (459)
                      ++
T Consensus       397 ~~  398 (410)
T PRK13392        397 RL  398 (410)
T ss_pred             Hc
Confidence            64

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.95  E-value=1.1e-26  Score=231.08  Aligned_cols=329  Identities=12%  Similarity=0.073  Sum_probs=219.4

Q ss_pred             cCCCCCCccCcHHHHHHHHHHhhcCC-----CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHH
Q 012647           93 YRTEELQPYVLDVVKKAENLMLERGE-----NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLA  167 (459)
Q Consensus        93 ~~~~~~~~~~~~~v~~a~~~~~~~~~-----~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~  167 (459)
                      |+|..+.+++++.|.+++.+.+....     .+.| +..+.+.++++++++.... +. .++++|++  |+|+|++++++
T Consensus         2 yld~aa~~~~~~~v~~~~~~~~~~~~~n~~~~~~~-~~~~~~~l~~a~~~~~~~~-~~-~~~~~i~~--t~g~teal~~~   76 (382)
T TIGR03403         2 YLDNNATTMLDPKVKELMDPFFCDIYGNPNSLHQF-GTATHPAIAEALDKLYKGI-NA-RDLDDIII--TSCATESNNWV   76 (382)
T ss_pred             cccCcCCCCCCHHHHHHHHHHHHhcCcCCccccHH-HHHHHHHHHHHHHHHHHHc-Cc-CCCCeEEE--eCCHHHHHHHH
Confidence            56777777778999999988875321     1223 2356678888888886432 21 14789999  99999999998


Q ss_pred             HHHHHH---hCC-CCEEEEcCCCCcchHH---HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          168 AALIER---YFP-GAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       168 ~~~~~~---~~~-gd~Vlv~~p~y~~~~~---~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      ...+..   +.+ +++|+++.+.|+.+..   .++..|++++.+|++  +++.+|++.+++++++   +++++++++|||
T Consensus        77 ~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~--~~g~~d~~~l~~~i~~---~t~lv~~~~~~n  151 (382)
T TIGR03403        77 LKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPIN--EQGTITAEQVREAITE---KTALVSVMWANN  151 (382)
T ss_pred             HHHHHHhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecC--CCCCCCHHHHHHhccc---CCeEEEEEcccC
Confidence            443311   145 4789999866665543   456789999999984  4568899999999975   678888999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      |||.+++   +++|.++|+++|+++++|+++ .++.-+.+         ....+.++++.|++|.+|++|  +|++++ .
T Consensus       152 ~tG~~~~---~~~I~~la~~~g~~~ivD~a~-~~g~~~~~---------~~~~~~D~~~~s~~K~~gp~G--~g~l~v-r  215 (382)
T TIGR03403       152 ETGMIFP---IKEIGEICKERGVLFHTDAVQ-AIGKIPVD---------VQKAGVDFLSFSAHKFHGPKG--VGGLYI-R  215 (382)
T ss_pred             CCccccC---HHHHHHHHHHcCCEEEEechh-hcCCCccC---------ccccCCCEEEEcchhhCCCCc--eEEEEE-C
Confidence            9999965   567889999999999999994 44322111         112234588899999999888  688865 2


Q ss_pred             CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012647          321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  400 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  400 (459)
                      .... .................+++..++.++...++.   .   .+.++...++++++++++.+.|+ +++   ++.+.
T Consensus       216 ~~~~-~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~---~---~~~~~~~~~~~~~l~~~l~~~L~-~~~---~~~~~  284 (382)
T TIGR03403       216 KGVE-LTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRL---A---NEYLDFEKSHVRRLRDRLEDALL-ELP---DVFVV  284 (382)
T ss_pred             CCCC-CCCcccCCCCCCCcccCCcChHHHHHHHHHHHH---H---HHhHHHHHHHHHHHHHHHHHHHh-cCC---CEEEE
Confidence            1111 001100000000011224455555444444421   1   23367778899999999999998 753   25555


Q ss_pred             cCC----cce--eeecCCCHHHHHHHHhcccEEEcCC-------------------------C--cEEEccC-ChhhHHH
Q 012647          401 LRQ----IGM--FSFTGLNKAQSDNMTNKWHVYMTKD-------------------------G--RISLAGL-SLAKCEY  446 (459)
Q Consensus       401 ~~~----~g~--f~~~~l~~~~~~~ll~~~gI~v~~g-------------------------g--Ris~~~~-~~e~i~~  446 (459)
                      .+.    .++  |.+.+++.+.+...+.++||.++.|                         |  |+|++.. |++|+++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~  364 (382)
T TIGR03403       285 GDREHRVPNTILISIKGVEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDY  364 (382)
T ss_pred             CCCCCCcCCEEEEEeCCCCHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHH
Confidence            432    122  3334556655444456679999842                         3  9998876 8899999


Q ss_pred             HHHHHHHHHhhc
Q 012647          447 LADAIIDSYHNV  458 (459)
Q Consensus       447 ~~~~l~~~~~~~  458 (459)
                      ++++|+++++++
T Consensus       365 ~~~~l~~~~~~~  376 (382)
T TIGR03403       365 TIEVFKKAVQRL  376 (382)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988765

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.95  E-value=7.5e-26  Score=225.51  Aligned_cols=325  Identities=14%  Similarity=0.072  Sum_probs=214.4

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC--CCCCCCCcc----cHHHHHHHHHHHhcCCCCccccCceEEe
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEG----LAAFNKVTAELLFGADNSVLKEQRVATV  155 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~g----~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (459)
                      +.+.|||+.|.++   ++.+ +|.+.+++.+.+....  ...|....|    ..++++++++++. .      ++.+++ 
T Consensus        38 g~~~id~~~~~~~---g~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~-~------~~~i~~-  105 (385)
T PRK05958         38 GRRMLNFASNDYL---GLAR-HPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFG-A------ERALLF-  105 (385)
T ss_pred             CceEEEeeCCCcc---cCCC-CHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC-C------CcEEEE-
Confidence            5689999998642   3322 7889999988775411  112222223    4667777777753 1      454554 


Q ss_pred             ecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEe
Q 012647          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (459)
Q Consensus       156 ~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~  235 (459)
                        ++|++++..+  +...+.+||+|+++.|+|+.+...++..|++++.+|.       .|++.+++.+++.++.++++++
T Consensus       106 --~~g~~~~~~~--l~~~~~~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~i~~~~~~~~lvi~  174 (385)
T PRK05958        106 --SSGYAANLAV--LTALAGKGDLIVSDKLNHASLIDGARLSRARVRRYPH-------NDVDALEALLAKWRAGRALIVT  174 (385)
T ss_pred             --CcHHHHHHHH--HHHhCCCCCEEEEeCccCHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhccCCCeEEEE
Confidence              5566666655  3334679999999999999999988889999888765       3789999988763234677778


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcce
Q 012647          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA  315 (459)
Q Consensus       236 ~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~  315 (459)
                      ++++||||..   .++++|+++|++||+++|+||+|....++......... ......++++++.||||.++++|   ||
T Consensus       175 ~~~~~~~G~~---~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~-~~~~~~~~~i~~~s~sK~~~~~G---g~  247 (385)
T PRK05958        175 ESVFSMDGDL---APLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAE-AGLAGEPDVILVGTLGKALGSSG---AA  247 (385)
T ss_pred             EecccCCCCc---CCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHh-hCCCCCCceEEEEechhhcccCC---cE
Confidence            8899999988   66889999999999999999998654332111111110 11233467899999999999877   88


Q ss_pred             EEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 012647          316 MNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGK  395 (459)
Q Consensus       316 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  395 (459)
                      +++   +++..+.+.......  ....+++...+.++...|+..      .. .++.++++.++++++.+.|+ +++   
T Consensus       248 ~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~aa~~aal~~~------~~-~~~~~~~~~~~~~~l~~~L~-~~~---  311 (385)
T PRK05958        248 VLG---SETLIDYLINRARPF--IFTTALPPAQAAAARAALRIL------RR-EPERRERLAALIARLRAGLR-ALG---  311 (385)
T ss_pred             EEc---CHHHHHHHHHhCccc--eecCCCCHHHHHHHHHHHHHH------hc-CHHHHHHHHHHHHHHHHHHH-HcC---
Confidence            755   777444433211111  111123333333333333211      01 14567889999999999999 876   


Q ss_pred             CcccccCCcceeeecCCC-----HHHHHHHHhcccEEEcCC-------C----cEEEcc-CChhhHHHHHHHHHHHH
Q 012647          396 DWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD-------G----RISLAG-LSLAKCEYLADAIIDSY  455 (459)
Q Consensus       396 ~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g-------g----Ris~~~-~~~e~i~~~~~~l~~~~  455 (459)
                       +++..+.++++ |+.+.     .++.+.|.+ +||.+.++       |    ||+++. .+++++++++++|++++
T Consensus       312 -~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~-~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~~  385 (385)
T PRK05958        312 -FQLMDSQSAIQ-PLIVGDNERALALAAALQE-QGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEAL  385 (385)
T ss_pred             -CCcCCCCCCEE-EEEeCCHHHHHHHHHHHHH-CCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence             46666666644 43331     245666665 69999752       2    999974 38999999999998763

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.7e-25  Score=220.31  Aligned_cols=326  Identities=17%  Similarity=0.160  Sum_probs=234.2

Q ss_pred             ccCCCCCCccCcHHHHHHHHHHhhc----CCCCCCCC----CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhH
Q 012647           92 AYRTEELQPYVLDVVKKAENLMLER----GENKEYLP----IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (459)
Q Consensus        92 ~~~~~~~~~~~~~~v~~a~~~~~~~----~~~~~Y~~----~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (459)
                      .|+|+......|..|.+++.+.+..    .+...|..    ..-+++.|+.++++++...     .++|++  |.|+|++
T Consensus        24 vylD~aa~~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~-----~~eIvf--t~~tT~a   96 (405)
T COG0520          24 VYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADS-----SDEIVF--TRGTTEA   96 (405)
T ss_pred             EEecCcccccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCC-----CCeEEE--eCChhHH
Confidence            3445555555689999999987632    11112221    2356899999999987651     388999  9999999


Q ss_pred             HHHHHHHHHH-hCCCCEEEEcCCCCc----chHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCC
Q 012647          164 LRLAAALIER-YFPGAKVLISSPTWG----NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA  238 (459)
Q Consensus       164 ~~l~~~~~~~-~~~gd~Vlv~~p~y~----~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p  238 (459)
                      +++++..+.. +.+||+|++..--|+    ++....+..|++++.+|++  +++.+|.+.++..+++   +|+++.++..
T Consensus        97 ln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~--~~g~~~~~~~~~~i~~---~Tklvais~v  171 (405)
T COG0520          97 LNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLD--DDGLLDLDALEKLITP---KTKLVALSHV  171 (405)
T ss_pred             HHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecC--CCCCcCHHHHHHhcCC---CceEEEEECc
Confidence            9998665543 578999999997775    4555666789999999994  5678999999998876   8999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCc-CcccCCCCcceEE
Q 012647          239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK-NLGLYAERIGAMN  317 (459)
Q Consensus       239 ~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK-~~~~~G~RiG~~~  317 (459)
                      +|.||++   .++++|+++|+++|+++++|.+ |...+.+.+         +...+.++++.|.+| .+|+.|  +|.++
T Consensus       172 Sn~tG~~---~pv~~I~~la~~~ga~v~VDaa-q~~~h~~id---------v~~l~~Df~afsgHKwl~gP~G--iGvLy  236 (405)
T COG0520         172 SNVTGTV---NPVKEIAELAHEHGALVLVDAA-QAAGHLPID---------VQELGCDFLAFSGHKWLLGPTG--IGVLY  236 (405)
T ss_pred             ccccccc---chHHHHHHHHHHcCCEEEEECc-cccCccCCC---------chhcCCCEEEEcccccccCCCc--eEEEE
Confidence            9999999   8899999999999999999999 666654322         244567899999999 888778  89998


Q ss_pred             EEeCChhHHHHHHHHHH-----------------hhccccccCCchHHHHHH-HHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012647          318 VVCSSSDLAARVKSQLK-----------------RLARPMYSNPPVHGARIV-ANVVGNPALFDEWKAEMEMMAGRIKNV  379 (459)
Q Consensus       318 ~v~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~  379 (459)
                      +   .++.++.+.....                 ..-.....+++.+.+.+. ...+   ++.++  ..++++.++.+++
T Consensus       237 ~---r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl---~~~~~--ig~~~i~~~e~~L  308 (405)
T COG0520         237 V---RKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAAL---DYLLE--IGMEAIEAHEREL  308 (405)
T ss_pred             E---chHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHH---HHHHH--HhHHHHHHHHHHH
Confidence            7   7775544311000                 000011123334333333 2222   22222  2367889999999


Q ss_pred             HHHHHHHHhhccCCCCCcccccC----Ccceeee--cCCCHHHHHHHHhcccEEEcCCC----------------cEEEc
Q 012647          380 RQKLFDSLSAKDKSGKDWSFILR----QIGMFSF--TGLNKAQSDNMTNKWHVYMTKDG----------------RISLA  437 (459)
Q Consensus       380 ~~~l~~~L~~~~g~~~~~~~~~~----~~g~f~~--~~l~~~~~~~ll~~~gI~v~~gg----------------Ris~~  437 (459)
                      .+++.+.|+ +++.   ++++.+    .++.+.|  .++....+...|.++||.++.|.                |+|++
T Consensus       309 ~~~~~~~L~-~~~~---v~i~g~~~~~r~~~vsF~v~~~~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~  384 (405)
T COG0520         309 TEYLLEGLS-ELPG---VEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLH  384 (405)
T ss_pred             HHHHHHHHh-cCCC---eEEecCCcccCceEEEEEeCCCCHHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEe
Confidence            999999999 7642   555544    3566555  36666666666666799998871                99988


Q ss_pred             cC-ChhhHHHHHHHHHHHHh
Q 012647          438 GL-SLAKCEYLADAIIDSYH  456 (459)
Q Consensus       438 ~~-~~e~i~~~~~~l~~~~~  456 (459)
                      .+ |+|||++++++|+++.+
T Consensus       385 ~YNt~edid~l~~aL~~~~~  404 (405)
T COG0520         385 LYNTEEDVDRLLEALKKALA  404 (405)
T ss_pred             ecCCHHHHHHHHHHHHHHhh
Confidence            77 88999999999998764

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.95  E-value=1.4e-25  Score=220.52  Aligned_cols=320  Identities=16%  Similarity=0.087  Sum_probs=211.0

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCC---C----CCCcccHHHHHHHHHHHhcCCCCccccCceEEee
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE---Y----LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~---Y----~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (459)
                      .+++|+...|+   |.+- +|+|.+++++.++... .+   |    .......++++.+++++..       ++ .++  
T Consensus         2 ~~~~~~~~~~~---~~~~-~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~la~~~~~-------~~-~iv--   66 (349)
T cd06454           2 KVLNFCSNDYL---GLAN-HPEVIEAAKEALDKYG-VGAGGSRLISGTSDLHEELEEELAEFHGK-------EA-ALV--   66 (349)
T ss_pred             CceecccCCcc---ccCC-CHHHHHHHHHHHHHhC-CCCCCcCeecCCchHHHHHHHHHHHHhCC-------CC-EEE--
Confidence            35677766653   4443 6889999999886421 21   2    2234457888888888643       23 344  


Q ss_pred             cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC--CCCcEEEE
Q 012647          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA--PGGSFILL  234 (459)
Q Consensus       157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~--~~~~~~ii  234 (459)
                      +++|++++..+  +...+.+||+|++++|+|..+...++..|++++.++.       +|++.+++.+++.  ++++++++
T Consensus        67 ~~sg~~a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~~le~~i~~~~~~~~~~~v~  137 (349)
T cd06454          67 FSSGYAANDGV--LSTLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKH-------NDMEDLEKLLREARRPYGKKLIV  137 (349)
T ss_pred             eccHHHHHHHH--HHHhcCCCCEEEEehhhhHHHHHHHHHcCCceEEecC-------CCHHHHHHHHHHhhccCCCeEEE
Confidence            56667787765  3444679999999999999988888899999887753       4778888888753  24678888


Q ss_pred             eCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH-HhcCCeEEEEEcCCcCcccCCCCc
Q 012647          235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF-ATRGMELLVAQSYSKNLGLYAERI  313 (459)
Q Consensus       235 ~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~S~SK~~~~~G~Ri  313 (459)
                      +++++||||..   .++++|+++|+++|+++|+|++|.....+.. ..  ..... ....+.+++++|+||.++++|   
T Consensus       138 ~~~~~~~tG~~---~~~~~i~~~~~~~~~~livD~a~~~g~~~~~-~~--~~~~~~~~~~~~~i~~~s~sK~~~~~g---  208 (349)
T cd06454         138 TEGVYSMDGDI---APLPELVDLAKKYGAILFVDEAHSVGVYGPH-GR--GVEEFGGLTDDVDIIMGTLGKAFGAVG---  208 (349)
T ss_pred             EeccccCCCCc---cCHHHHHHHHHHcCCEEEEEccccccccCCC-CC--ChhhhccccccCcEEEeechhhhcccC---
Confidence            89999999998   6688999999999999999999764222111 11  11111 123356899999999998755   


Q ss_pred             ceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012647          314 GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  393 (459)
Q Consensus       314 G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  393 (459)
                      ||++.   +++..+.+........  .....+...+.++...|+..      .+ .+..+++++++++.+.+.|. ++| 
T Consensus       209 G~i~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~------~~-~~~~~~~~~~~~~~l~~~l~-~~g-  274 (349)
T cd06454         209 GYIAG---SKELIDYLRSYARGFI--FSTSLPPAVAAAALAALEVL------QG-GPERRERLQENVRYLRRGLK-ELG-  274 (349)
T ss_pred             CEEEC---CHHHHHHHHHhchhhh--ccCCCCHHHHHHHHHHHHHH------hc-CHHHHHHHHHHHHHHHHHHH-hcC-
Confidence            88754   6775555443322111  11123333333333333211      11 35667899999999999999 876 


Q ss_pred             CCCcccccCCcceeeec-C---CC-HHHHHHHHhcccEEEcCC---------C--cEEEcc-CChhhHHHHHHHHHHH
Q 012647          394 GKDWSFILRQIGMFSFT-G---LN-KAQSDNMTNKWHVYMTKD---------G--RISLAG-LSLAKCEYLADAIIDS  454 (459)
Q Consensus       394 ~~~~~~~~~~~g~f~~~-~---l~-~~~~~~ll~~~gI~v~~g---------g--Ris~~~-~~~e~i~~~~~~l~~~  454 (459)
                         +....+.++++.+. .   .+ .++.+.|+++ ||.+.++         +  ||+++. .+++++++++++|+++
T Consensus       275 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  348 (349)
T cd06454         275 ---FPVGGSPSHIIPPLIGDDPAKAVAFSDALLER-GIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV  348 (349)
T ss_pred             ---CcccCCCCCcEEEEeCCChHHHHHHHHHHHhC-CceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence               45554444443332 1   22 3445666665 9998652         2  999875 3899999999999764

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.95  E-value=2.9e-25  Score=206.79  Aligned_cols=314  Identities=20%  Similarity=0.149  Sum_probs=209.0

Q ss_pred             CCC-CCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHh---C-C----------CCEEEEcC
Q 012647          120 KEY-LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY---F-P----------GAKVLISS  184 (459)
Q Consensus       120 ~~Y-~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~---~-~----------gd~Vlv~~  184 (459)
                      .+| +-..|++++|+..++.+...      +++|+    .||+.+++++..++...   . +          .-+.|+|.
T Consensus        62 RNY~G~l~Gipe~r~l~a~llgv~------~~~vi----v~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPv  131 (425)
T PF12897_consen   62 RNYPGGLDGIPEARELFAELLGVP------PENVI----VGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPV  131 (425)
T ss_dssp             TSS-S-SS--HHHHHHHHHHHTS-------GGGEE----E-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEE
T ss_pred             cCCCCccCChHHHHHHHHHHhCCC------HHHEE----EeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecC
Confidence            579 88999999999999998544      78885    48888998876665432   1 1          23799999


Q ss_pred             CCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH-HHhcCC
Q 012647          185 PTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV-IQEKNH  263 (459)
Q Consensus       185 p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l-~~~~~~  263 (459)
                      |+|..|..+++.+|++.+.||+++   .++|.|.+++.+.+.+...-+..++..+||||+++|.+..++++.+ ....++
T Consensus       132 PGYDRHFai~E~~Giemi~VpM~~---dGPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DF  208 (425)
T PF12897_consen  132 PGYDRHFAITEHFGIEMIPVPMTE---DGPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDF  208 (425)
T ss_dssp             S--HHHHHHHHHCT-EEEEEEEET---TEE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-
T ss_pred             CCchHHHHHHHhhCcEEEecCCCC---CCCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCe
Confidence            999999999999999999999973   3699999999987644444456677789999999999999999988 345899


Q ss_pred             eeEEeccCCCCCC-CCCCCCh-hHHHHH---HhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhcc
Q 012647          264 IPFFDVAYQGFAS-GSLDNDA-SSVRLF---ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLAR  338 (459)
Q Consensus       264 ~ii~Deay~~~~~-~~~~~~~-~~~~~~---~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~  338 (459)
                      .|+-|+||.-... ++.+... ..+...   ....++++...|.||+-- ||-+++++..   +++.++.+.+.+..   
T Consensus       209 RI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf-~GaGva~~aa---S~~Nl~~~~~~~~~---  281 (425)
T PF12897_consen  209 RIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITF-PGAGVAFFAA---SEANLAWIKKHLSV---  281 (425)
T ss_dssp             EEEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS--TTSS-EEEEE----HHHHHHHHHHHHH---
T ss_pred             EEEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEeccccccc-CCcceeeeec---CHHHHHHHHHHhcC---
Confidence            9999999965443 2111111 122222   224569999999999874 8988999866   88888888777653   


Q ss_pred             ccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCcccccCCcceeeecCC---CH
Q 012647          339 PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFTGL---NK  414 (459)
Q Consensus       339 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~g~f~~~~l---~~  414 (459)
                       .+.++.-+.|..-..+|.+.+  ...+++|++.++.++-+.+.+.+.|++++| ..+..++..|+||||++++.   +.
T Consensus       282 -~tIgpdKvNQLRHvrff~d~~--gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G~A  358 (425)
T PF12897_consen  282 -QTIGPDKVNQLRHVRFFKDAE--GGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDGTA  358 (425)
T ss_dssp             -H-S---HHHHHHHHHHHHSHH--THHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT-H
T ss_pred             -ceeCccHHHHHHHHHHhcChh--hHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCChH
Confidence             355888999999999998743  122678999999999999999999985666 22334677899999998754   45


Q ss_pred             HHHHHHHhcccEEEcCCC--------------cEEEccCChhhHHHHHHHHHHHHh
Q 012647          415 AQSDNMTNKWHVYMTKDG--------------RISLAGLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       415 ~~~~~ll~~~gI~v~~gg--------------Ris~~~~~~e~i~~~~~~l~~~~~  456 (459)
                      ..+..|.++.||.++|.|              ||+.+..+.||++.+++.+.-.++
T Consensus       359 krvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv~  414 (425)
T PF12897_consen  359 KRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCVK  414 (425)
T ss_dssp             HHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            667777778899999964              998888788999999998877665

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.95  E-value=1e-25  Score=225.79  Aligned_cols=329  Identities=15%  Similarity=0.185  Sum_probs=216.1

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcC------CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEee
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG------ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~------~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (459)
                      ...++|..|..       +++|.|++++...+...      ....|....+.+++++.+++++....|..  ..+|++  
T Consensus        19 ~~~~~~~~~~~-------~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~--~~~v~~--   87 (402)
T cd00378          19 RETLELIASEN-------FTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAE--YANVQP--   87 (402)
T ss_pred             HhCeeeeccCC-------cCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCC--ceeeec--
Confidence            45788877653       24889999998755211      12345566677778876555544333432  344544  


Q ss_pred             cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH-----hhhCCCCeeeeeeecC-CCCCCCHHHHHHHHHcCCCCc
Q 012647          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI-----FNDARVPWSEYRYYDP-KTVGLDFEGMIADIKAAPGGS  230 (459)
Q Consensus       157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~-----~~~~G~~v~~v~~~~~-~~~~~d~e~l~~~i~~~~~~~  230 (459)
                      + ||++++.++  +...+.|||+|++++|+|..+...     ++..|.+++.+++..+ +++.+|++++++.+..  +++
T Consensus        88 ~-sgt~a~~~~--l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~--~~~  162 (402)
T cd00378          88 H-SGSQANLAV--YFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALE--FKP  162 (402)
T ss_pred             C-CcHHHHHHH--HHHhcCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHh--CCC
Confidence            4 678999887  444477999999999999876543     5667888877777433 2689999999999864  256


Q ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccC-CCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccC
Q 012647          231 FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAY-QGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (459)
Q Consensus       231 ~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  309 (459)
                      +++++++++||+  .   .++++|+++|++||+++|+|++| .++.+.+.  ....    .. . ..++++|+||.+  +
T Consensus       163 ~~v~~~~~~~~~--~---~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~--~~~~----~~-~-~dv~~~s~sK~l--~  227 (402)
T cd00378         163 KLIVAGASAYPR--P---IDFKRFREIADEVGAYLLVDMAHVAGLVAGGV--FPNP----LP-G-ADVVTTTTHKTL--R  227 (402)
T ss_pred             CEEEecCcccCC--C---cCHHHHHHHHHhcCCEEEEEccchhhhhhccc--CCCc----cc-C-CcEEEeccccCC--C
Confidence            778888888874  3   46889999999999999999994 44433221  0001    11 2 247899999987  7


Q ss_pred             CCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012647          310 AERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA  389 (459)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  389 (459)
                      |+|.||++.  .+++..+.+......   ...+++....+.++...+..  ..   ....++.+++++++++++.+.|+ 
T Consensus       228 G~~gg~i~~--~~~~~~~~l~~~~~~---~~~~~~~~~~~~a~~~al~~--~~---~~~~~~~~~~~~~~~~~l~~~L~-  296 (402)
T cd00378         228 GPRGGLILT--RKGELAKKINSAVFP---GLQGGPHLHVIAAKAVALKE--AL---EPEFKAYAKQVVENAKALAEALK-  296 (402)
T ss_pred             CCCceEEEe--ccHHHHHHHHHHhCc---cccCCchHHHHHHHHHHHHH--Hh---hHHHHHHHHHHHHHHHHHHHHHH-
Confidence            899999954  343655554432211   11222222222222222211  10   11346777889999999999999 


Q ss_pred             ccCCCCCcccc-cCCcceeeecCC-----CHHHHHHHHhcccEEEcCC-------------C-cEEEccC-----ChhhH
Q 012647          390 KDKSGKDWSFI-LRQIGMFSFTGL-----NKAQSDNMTNKWHVYMTKD-------------G-RISLAGL-----SLAKC  444 (459)
Q Consensus       390 ~~g~~~~~~~~-~~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~g-------------g-Ris~~~~-----~~e~i  444 (459)
                      ++|    +.+. .+.+++++|+.+     +.+.+.++++++||.+.+.             + ||++...     +++++
T Consensus       297 ~~g----~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di  372 (402)
T cd00378         297 ERG----FKVVSGGTDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEM  372 (402)
T ss_pred             hCC----CeEeecCCCCeEEEEeCCccCCCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHH
Confidence            877    4554 456788888865     3455666777789999531             1 8877543     58999


Q ss_pred             HHHHHHHHHHHhh
Q 012647          445 EYLADAIIDSYHN  457 (459)
Q Consensus       445 ~~~~~~l~~~~~~  457 (459)
                      +++++.|++++++
T Consensus       373 ~~~~~~l~~~~~~  385 (402)
T cd00378         373 EEIADFIARALKD  385 (402)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.95  E-value=2e-25  Score=222.41  Aligned_cols=337  Identities=12%  Similarity=0.052  Sum_probs=213.3

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC--CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...+|+..|..-...+..  +|.|.+++.+.++...  ...| ......++.+.+++..    +    .+++++  ++|
T Consensus        30 G~~~lD~~~g~~~~~lGh~--~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~la~~l~~~~----~----~~~v~~--~~s   96 (389)
T PRK01278         30 GERYLDFASGIAVNSLGHA--HPHLVEALKEQAEKLWHVSNLY-RIPEQERLAERLVENS----F----ADKVFF--TNS   96 (389)
T ss_pred             CCEEEECCccHhhccCCCC--CHHHHHHHHHHHHhcCcccccc-CChHHHHHHHHHHhhC----C----CCEEEE--cCC
Confidence            3568899887543333552  7889999988876421  0112 2223344555555442    1    367988  999


Q ss_pred             chhHHHHHHHHHHHh--CCCC----EEEEcCCCCcchHHHhhhCCCCeeeeeee-c-CCCCC----CCHHHHHHHHHcCC
Q 012647          160 GTGSLRLAAALIERY--FPGA----KVLISSPTWGNHKNIFNDARVPWSEYRYY-D-PKTVG----LDFEGMIADIKAAP  227 (459)
Q Consensus       160 gt~a~~l~~~~~~~~--~~gd----~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~-~-~~~~~----~d~e~l~~~i~~~~  227 (459)
                      |++|++.+.++...+  .+||    +|++.+++|.++.......+......+.. + ..++.    .|++.+++.+++  
T Consensus        97 GseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--  174 (389)
T PRK01278         97 GAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITP--  174 (389)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhCC--
Confidence            999999997776543  3666    99999999998876665544332221100 0 11111    589999998875  


Q ss_pred             CCcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc
Q 012647          228 GGSFILLHGCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (459)
Q Consensus       228 ~~~~~ii~~~p~NPTG-~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  306 (459)
                       ++++++++.++||+| .+++.+.+++|.++|++||+++|+||+|.+++..+.   ...... ....++   +.||||.+
T Consensus       175 -~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~---~~~~~~-~~~~pd---i~t~sK~l  246 (389)
T PRK01278        175 -NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGK---LFAHEW-AGVTPD---IMAVAKGI  246 (389)
T ss_pred             -CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc---ceeecc-cCCCCC---EEEEehhc
Confidence             678888888899999 789999999999999999999999999998865421   111111 111223   24899999


Q ss_pred             ccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          307 GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDS  386 (459)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  386 (459)
                      + +|+|+||+++   +++.    .+.+.......+.+.+.++|.++...|+.-. .+.+.+++++..++++++.+.+.+ 
T Consensus       247 ~-~G~~ig~~~~---~~~~----~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~-~~~~~~~~~~~~~~l~~~l~~l~~-  316 (389)
T PRK01278        247 G-GGFPLGACLA---TEEA----AKGMTPGTHGSTYGGNPLAMAVGNAVLDVIL-APGFLDNVQRMGLYLKQKLEGLVD-  316 (389)
T ss_pred             c-CCcceEEEEE---cHHH----HhccCCCCCCCCCCccHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHh-
Confidence            9 8999999866   6663    3333333333344566677777655443110 001123344444444444433322 


Q ss_pred             HhhccCCCCCcccccCCcceeeecCC---CHHHHHHHHhcccEEEcCCC----cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          387 LSAKDKSGKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKDG----RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       387 L~~~~g~~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~gg----Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                         +++  .-+..+.+ .|+++|+.+   +.+++++|+++ ||.+.|++    ||+++. .+++++++++++|.++++++
T Consensus       317 ---~~~--~~~~~v~g-~G~~~~i~~~~~~~~~~~~l~~~-GV~~~p~~~~~lR~~p~~~~~~~~i~~~l~~l~~~l~~~  389 (389)
T PRK01278        317 ---RFP--DVIEEVRG-KGLLLGLKCVVPNRDLVQALRDE-GLLTVGAGDNVVRLLPPLIITEEEIDEALERLERAAESL  389 (389)
T ss_pred             ---hCC--CceeeEec-ccEEEEEEEecCHHHHHHHHHHC-CeEEeecCCCEEEEeCCcccCHHHHHHHHHHHHHHHHhC
Confidence               221  01223334 456665533   34567788876 99999976    888643 48999999999999998764

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.95  E-value=4.7e-25  Score=217.44  Aligned_cols=314  Identities=13%  Similarity=0.095  Sum_probs=206.9

Q ss_pred             CccCcHHHHHHHHHHhhcCCCCCCCCCcc--cHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCC
Q 012647           99 QPYVLDVVKKAENLMLERGENKEYLPIEG--LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP  176 (459)
Q Consensus        99 ~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g--~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~  176 (459)
                      .+++++.+.+++.+....   +.| +...  .+++++.+++++....     ++.+++  +.||++++.++  +.+.+.+
T Consensus         7 ~~~~~~~v~~a~~~~~~~---~~~-~~~~~~~~~~~~~la~~~g~~~-----~~~~~~--~~~~t~al~~~--~~~~~~~   73 (356)
T cd06451           7 PSNVPPRVLKAMNRPMLG---HRS-PEFLALMDEILEGLRYVFQTEN-----GLTFLL--SGSGTGAMEAA--LSNLLEP   73 (356)
T ss_pred             CcCCCHHHHHHhCCCccC---CCC-HHHHHHHHHHHHHHHHHhcCCC-----CCEEEE--ecCcHHHHHHH--HHHhCCC
Confidence            344588899888654321   223 2222  5678888888875421     345667  88889999988  4444679


Q ss_pred             CCEEEEcCCCCcc--hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHH
Q 012647          177 GAKVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKI  254 (459)
Q Consensus       177 gd~Vlv~~p~y~~--~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i  254 (459)
                      ||+|+++.++|..  +...++..|++++.+|.+  .++.+|++++++.+++  .+++++++++|+||||.+++   +++|
T Consensus        74 g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~i~~--~~~~~v~i~~~~~~~G~~~~---~~~i  146 (356)
T cd06451          74 GDKVLVGVNGVFGDRWADMAERYGADVDVVEKP--WGEAVSPEEIAEALEQ--HDIKAVTLTHNETSTGVLNP---LEGI  146 (356)
T ss_pred             CCEEEEecCCchhHHHHHHHHHhCCCeEEeecC--CCCCCCHHHHHHHHhc--cCCCEEEEeccCCCcccccC---HHHH
Confidence            9999999988765  566788899999999984  3468999999999975  25678888999999999955   6678


Q ss_pred             HHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHH---
Q 012647          255 ADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKS---  331 (459)
Q Consensus       255 ~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~---  331 (459)
                      .++|+++|+++++|++|. ++....     .+    ...+..+++.|.+|.++.| .++||+++   +++..+.+..   
T Consensus       147 ~~~a~~~~~~li~D~~~~-~g~~~~-----~~----~~~~~d~~~~s~~K~l~~p-~g~G~l~~---~~~~~~~~~~~~~  212 (356)
T cd06451         147 GALAKKHDALLIVDAVSS-LGGEPF-----RM----DEWGVDVAYTGSQKALGAP-PGLGPIAF---SERALERIKKKTK  212 (356)
T ss_pred             HHHHHhcCCEEEEeeehh-ccCccc-----cc----cccCccEEEecCchhccCC-CCcceeEE---CHHHHHHHHhcCC
Confidence            889999999999999853 432111     11    1112346677999999854 35899976   7775554432   


Q ss_pred             HHH---------hh-c-cccccCCchHH-HHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccc
Q 012647          332 QLK---------RL-A-RPMYSNPPVHG-ARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF  399 (459)
Q Consensus       332 ~~~---------~~-~-~~~~~~~~~~~-~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~  399 (459)
                      ...         .. . ...+.+.+.+. +.++...++   +..  ...+++..++.+++++++.+.|+ ++|    ++.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~---~l~--~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~  282 (356)
T cd06451         213 PKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALD---LIL--EEGLENRWARHRRLAKALREGLE-ALG----LKL  282 (356)
T ss_pred             CCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHH---HHH--HhhHHHHHHHHHHHHHHHHHHHH-HcC----Cee
Confidence            000         00 0 00122223332 232222221   110  12356778888899999999999 776    344


Q ss_pred             ccC---CcceeeecC----CCH-HHHHHHHhcccEEEcCC------C--cEEEccC-ChhhHHHHHHHHHHHHh
Q 012647          400 ILR---QIGMFSFTG----LNK-AQSDNMTNKWHVYMTKD------G--RISLAGL-SLAKCEYLADAIIDSYH  456 (459)
Q Consensus       400 ~~~---~~g~f~~~~----l~~-~~~~~ll~~~gI~v~~g------g--Ris~~~~-~~e~i~~~~~~l~~~~~  456 (459)
                      ..+   ..+.+.|+.    .+. ++++.|.+++||.+++|      +  |+|++.. ++|++++++++|+++++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~~  356 (356)
T cd06451         283 LAKPELRSPTVTAVLVPEGVDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEALK  356 (356)
T ss_pred             ccCcccCCCceEEEECCCCCCHHHHHHHHHHhCCEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence            322   133444432    233 45666666559999865      2  9998754 78999999999998774

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.95  E-value=2.3e-25  Score=222.91  Aligned_cols=323  Identities=15%  Similarity=0.152  Sum_probs=208.6

Q ss_pred             cCCCCCCccCcHHHHHHHHHHhhcCC---CCCCCCCcc----cHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHH
Q 012647           93 YRTEELQPYVLDVVKKAENLMLERGE---NKEYLPIEG----LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR  165 (459)
Q Consensus        93 ~~~~~~~~~~~~~v~~a~~~~~~~~~---~~~Y~~~~g----~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~  165 (459)
                      |+|..+..++|+.+.+++.+.+....   ...|....+    .+++|+.++++++..      +++|++  +.|++++++
T Consensus        20 yl~~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~------~~~v~~--~~~~t~~l~   91 (397)
T TIGR01976        20 FFDNPAGTQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNAD------PPEVVF--GANATSLTF   91 (397)
T ss_pred             EecCCccCCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCC------CCeEEE--eCCHHHHHH
Confidence            34444445568999999988875321   123433323    468899999987543      456888  999999988


Q ss_pred             HHHHHHH-HhCCCCEEEEcCCCCcch----HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          166 LAAALIE-RYFPGAKVLISSPTWGNH----KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       166 l~~~~~~-~~~~gd~Vlv~~p~y~~~----~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      ++...+. .+.+||+|++++|.|...    ...++..|++++.++++ ++++.+|++.+++++++   +++++++++|+|
T Consensus        92 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~l~~~i~~---~~~lv~i~~~~n  167 (397)
T TIGR01976        92 LLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVD-EATGELHPDDLASLLSP---RTRLVAVTAASN  167 (397)
T ss_pred             HHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEecc-ccCCCcCHHHHHHhcCC---CceEEEEeCCCC
Confidence            7644432 256999999999988654    34556789999999985 33578999999999975   788999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      |||.+   .++++|+++|++||+++++|+++. .+....     .    +...+.++++.|++|.+|   +|+||+++  
T Consensus       168 ~tG~~---~~~~~i~~~~~~~~~~~ivD~a~~-~~~~~~-----~----~~~~~~d~~~~s~~K~~g---~~~G~l~~--  229 (397)
T TIGR01976       168 TLGSI---VDLAAITELVHAAGALVVVDAVHY-APHGLI-----D----VQATGADFLTCSAYKFFG---PHMGILWG--  229 (397)
T ss_pred             CCCcc---CCHHHHHHHHHHcCCEEEEehhhh-ccccCC-----C----HHHcCCCEEEEechhhcC---CceEEEEE--
Confidence            99999   568889999999999999999953 222111     1    122334567789999875   46899876  


Q ss_pred             CChhHHHHHHHHHHhhc------cccccCCchH---HHHHHHHHhCChh------hHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          321 SSSDLAARVKSQLKRLA------RPMYSNPPVH---GARIVANVVGNPA------LFDEWKAEMEMMAGRIKNVRQKLFD  385 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~---~~~~~~~~L~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~  385 (459)
                       +++.++.+........      +...++++..   +...+...+.+.+      ......+.+++.+++..+.++++.+
T Consensus       230 -~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  308 (397)
T TIGR01976       230 -RPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLV  308 (397)
T ss_pred             -cHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence             7774443322111000      0001112221   2223333332211      0111112357788888899999999


Q ss_pred             HHhhccCCCCCcccccC-----Ccceeeec--CCCHH-HHHHHHhcccEEEcCC-----------------C--cEEEcc
Q 012647          386 SLSAKDKSGKDWSFILR-----QIGMFSFT--GLNKA-QSDNMTNKWHVYMTKD-----------------G--RISLAG  438 (459)
Q Consensus       386 ~L~~~~g~~~~~~~~~~-----~~g~f~~~--~l~~~-~~~~ll~~~gI~v~~g-----------------g--Ris~~~  438 (459)
                      .|+ +++.   +++..+     .++++.+.  +.+.+ +.++| +++||.+..|                 +  |||+..
T Consensus       309 ~L~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~  383 (397)
T TIGR01976       309 GLS-DLPG---VTLYGVARLAARVPTVSFTVHGLPPQRVVRRL-ADQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAH  383 (397)
T ss_pred             HHh-cCCC---EEEeCCCCccCCCceEEEEeCCcCHHHHHHHH-HHCCeEEEeCccchHHHHHHhCCCCCCCeEEEEeec
Confidence            998 7641   455433     44444332  34444 45555 4469998754                 2  999866


Q ss_pred             C-ChhhHHHHHHHH
Q 012647          439 L-SLAKCEYLADAI  451 (459)
Q Consensus       439 ~-~~e~i~~~~~~l  451 (459)
                      . +++|+++++++|
T Consensus       384 ~~t~~di~~l~~~l  397 (397)
T TIGR01976       384 YNTAEEVDRLLEAL  397 (397)
T ss_pred             cCCHHHHHHHHHhC
Confidence            5 788999998864

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.95  E-value=6.6e-25  Score=216.59  Aligned_cols=312  Identities=13%  Similarity=0.031  Sum_probs=201.3

Q ss_pred             CcHHHHHHHHHHhhcCCC-------CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHh
Q 012647          102 VLDVVKKAENLMLERGEN-------KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY  174 (459)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~-------~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~  174 (459)
                      +.+.+.+++.+.......       ..+....-+.++++.++++++.        +++++  |+|+++++.++  +...+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--------~~i~~--~~g~t~al~~~--l~~~~   80 (361)
T cd06452          13 LTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM--------DEARV--TPGAREGKFAV--MHSLC   80 (361)
T ss_pred             CCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcCC--------ceEEE--eCCHHHHHHHH--HHHhc
Confidence            478888888887632100       0111122357899999998632        57888  99999999988  44446


Q ss_pred             CCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCC----CCcEEEEeCCCCCCCCCCCCHHH
Q 012647          175 FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP----GGSFILLHGCAHNPTGIDPTPEQ  250 (459)
Q Consensus       175 ~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~----~~~~~ii~~~p~NPTG~~~s~~~  250 (459)
                      .+||+|+++.++|......++..|++++.+|++.+.++.+|++.+++++++..    ++++++++++|+||||..   .+
T Consensus        81 ~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~---~~  157 (361)
T cd06452          81 EKGDWVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNL---HD  157 (361)
T ss_pred             CCCCEEEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeee---cc
Confidence            79999999999877766678899999999998543456899999999987421    257788889999999988   78


Q ss_pred             HHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHH
Q 012647          251 WEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVK  330 (459)
Q Consensus       251 l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~  330 (459)
                      +++|+++|+++|+++|+|++|...... .     ..    ...+.+++++|+||.++ +|.|+||+++   +++.++++.
T Consensus       158 ~~~i~~~~~~~~~~vivD~a~~~g~~~-~-----~~----~~~~~d~~~~s~~K~l~-~~~~~G~l~~---~~~~~~~l~  223 (361)
T cd06452         158 AKKIAKVCHEYGVPLLLNGAYTVGRMP-V-----SG----KELGADFIVGSGHKSMA-ASAPIGVLAT---TEEWADIVF  223 (361)
T ss_pred             HHHHHHHHHHcCCeEEEECCcccCCcC-C-----CH----HHcCCCEEEecCCcccc-CCCCeEEEEE---CHHHHHHHh
Confidence            889999999999999999998642211 1     11    12245789999999998 4569999976   777555443


Q ss_pred             HHHHhh--cc-cccc-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCcccc---cC
Q 012647          331 SQLKRL--AR-PMYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFI---LR  402 (459)
Q Consensus       331 ~~~~~~--~~-~~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~---~~  402 (459)
                      ......  .. .... +.....+..+...+.   +   +.+.+++..+. .++++++.+.|+ ++ |    ++++   ..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~---~---~~~~~~~~~~~-~~~~~~l~~~L~-~l~g----~~v~~~~~~  291 (361)
T cd06452         224 RTSQMFKIKEVELLGCTLRGAPLVTLMASFP---H---VKERVKRWDEE-VEKARWFVAELE-KIEG----IKQLGEKPK  291 (361)
T ss_pred             ccccccccceeeeeccccCchHHHHHHHHHH---H---HHHHHHHHHHH-HHHHHHHHHHHh-cCCC----eEEECCCCC
Confidence            221100  00 0000 111111111111111   1   11223333333 334578889998 87 5    4543   22


Q ss_pred             Ccceeeec-C-C----------CHHHHHHHHhcccEEEcCCC-----cEEEccCChhhHHHHHHHHHHHH
Q 012647          403 QIGMFSFT-G-L----------NKAQSDNMTNKWHVYMTKDG-----RISLAGLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       403 ~~g~f~~~-~-l----------~~~~~~~ll~~~gI~v~~gg-----Ris~~~~~~e~i~~~~~~l~~~~  455 (459)
                      ...+..+- + +          ..++.++|++ +||.+...|     |++..+.++|+++.++++|+++.
T Consensus       292 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~gI~~~~~~~~~~~ri~~~g~~~e~~~~l~~al~~~~  360 (361)
T cd06452         292 NHDLMFFETPSFDEIAKKHKRRGYFLYSELKK-RGIHGIKPGLTRYFKLSTYGLTWEQVEYVVDAFKEIA  360 (361)
T ss_pred             CCceEEEEcCCcchhhhhccccchhHHHHHHH-cCceEEcCCCceEEEEEecCCCHHHHHHHHHHHHHHh
Confidence            22222211 1 1          1145667766 599975444     88874458999999999998764

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.94  E-value=4.3e-25  Score=220.84  Aligned_cols=328  Identities=13%  Similarity=0.055  Sum_probs=216.9

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +.+.+||..|.+-+..+.  -+|.+.+++.+.+++.  ....|.+..+ .++.+.+++++...     .++++++  ++|
T Consensus        42 g~~~lD~~s~~~~~~lG~--~~p~v~~ai~~~~~~~~~~~~~~~~~~~-~~la~~l~~~~~~~-----~~~~v~~--~~s  111 (398)
T PRK03244         42 GKEYLDLLGGIAVNALGH--AHPAVVEAVTRQLATLGHVSNLFATEPQ-IALAERLVELLGAP-----EGGRVFF--CNS  111 (398)
T ss_pred             CCEEEECCcCHhhccCCC--CCHHHHHHHHHHHHhccCccCccCCHHH-HHHHHHHHHhCCCC-----CCCEEEE--eCc
Confidence            457899998865333343  2688999998887642  1234643333 46666676664211     2468999  999


Q ss_pred             chhHHHHHHHHHHHhCCC-CEEEEcCCCCcchHHHhhh-CC------------CCeeeeeeecCCCCCCCHHHHHHHHHc
Q 012647          160 GTGSLRLAAALIERYFPG-AKVLISSPTWGNHKNIFND-AR------------VPWSEYRYYDPKTVGLDFEGMIADIKA  225 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~g-d~Vlv~~p~y~~~~~~~~~-~G------------~~v~~v~~~~~~~~~~d~e~l~~~i~~  225 (459)
                      |++++..+.++...  +| ++|+..+++|..+...... .|            .++..+|+       .|++.+++.+.+
T Consensus       112 gsea~~~al~~~~~--~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~~~~  182 (398)
T PRK03244        112 GAEANEAAFKLARL--TGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY-------GDVDALAAAVDD  182 (398)
T ss_pred             hHHHHHHHHHHHHH--HCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC-------CCHHHHHHhhcC
Confidence            99999999776543  44 5788888899877433322 22            12223322       378999988854


Q ss_pred             CCCCcEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCc
Q 012647          226 APGGSFILLHGCAHNPTGIDPTPEQ-WEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK  304 (459)
Q Consensus       226 ~~~~~~~ii~~~p~NPTG~~~s~~~-l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  304 (459)
                         +++++++++++||||.++++++ +++|.++|++||+++|+||+|.+++..+   ..+... .....+++   .+|||
T Consensus       183 ---~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g---~~~~~~-~~~~~pDi---~t~sK  252 (398)
T PRK03244        183 ---DTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTG---AWFAHQ-HDGVTPDV---VTLAK  252 (398)
T ss_pred             ---CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccc---hHHhhh-hhCCCCCE---EEEch
Confidence               6778888999999999987655 9999999999999999999998876532   111111 11222343   38899


Q ss_pred             CcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          305 NLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF  384 (459)
Q Consensus       305 ~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~  384 (459)
                      .++ +|+|+||+++   +++..    +.+.......+.+.+.+++.++...|+.-      .  -+...++++++.+++.
T Consensus       253 ~l~-~G~~ig~~~~---~~~~~----~~~~~~~~~~t~~~~~~~~aaa~a~l~~~------~--~~~~~~~~~~~~~~l~  316 (398)
T PRK03244        253 GLG-GGLPIGACLA---FGPAA----DLLTPGLHGSTFGGNPVACAAALAVLDTI------A--SEGLLENAERLGEQLR  316 (398)
T ss_pred             hhh-CCcccEEEEE---cHHHH----hhccCCCCcCCCCCCHHHHHHHHHHHHHH------H--hccHHHHHHHHHHHHH
Confidence            999 8999999976   77743    33332222223356667777776654311      0  0234567777788899


Q ss_pred             HHHhhccCCCCCcccccCCcceeeecCCC----HHHHHHHHhcccEEEcCCC----cEEEcc-CChhhHHHHHHHHHHHH
Q 012647          385 DSLSAKDKSGKDWSFILRQIGMFSFTGLN----KAQSDNMTNKWHVYMTKDG----RISLAG-LSLAKCEYLADAIIDSY  455 (459)
Q Consensus       385 ~~L~~~~g~~~~~~~~~~~~g~f~~~~l~----~~~~~~ll~~~gI~v~~gg----Ris~~~-~~~e~i~~~~~~l~~~~  455 (459)
                      +.|+ +++.|. +..+. ..|.++|+.+.    .++.+++++ +||.+.+.+    ||+++. .+++++++++++|.+++
T Consensus       317 ~~L~-~~~~~~-~~~v~-g~g~~~~i~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~iR~~p~~~~t~~~i~~~~~~l~~~l  392 (398)
T PRK03244        317 AGIE-ALGHPL-VDHVR-GRGLLLGIVLTAPVAKAVEAAARE-AGFLVNAVAPDVIRLAPPLIITDAQVDAFVAALPAIL  392 (398)
T ss_pred             HHHH-hcCCCc-eeeEe-eccEEEEEEEeccHHHHHHHHHHH-CCeEEeecCCCEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence            9998 765321 11222 35677776552    234556665 699998754    888665 48999999999999999


Q ss_pred             hhc
Q 012647          456 HNV  458 (459)
Q Consensus       456 ~~~  458 (459)
                      +++
T Consensus       393 ~~~  395 (398)
T PRK03244        393 DAA  395 (398)
T ss_pred             Hhc
Confidence            865

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.94  E-value=2.2e-25  Score=221.57  Aligned_cols=321  Identities=15%  Similarity=0.082  Sum_probs=211.6

Q ss_pred             cCCCCCCccCcHHHHHHHHHHhhcCCCCCCCC-------CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHH
Q 012647           93 YRTEELQPYVLDVVKKAENLMLERGENKEYLP-------IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR  165 (459)
Q Consensus        93 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~-------~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~  165 (459)
                      |+|..+..++++.|.+++.+.+.....+.+..       ..-++++|+.++++++..      +++|++  |+|+|++++
T Consensus         2 yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~------~~~i~~--t~~~t~a~~   73 (379)
T TIGR03402         2 YLDNNATTRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAE------PDEIIF--TSGGTESDN   73 (379)
T ss_pred             cCCCcCCCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCC------CCeEEE--eCcHHHHHH
Confidence            56766776778999999988875321111111       123567888888887543      678999  999999999


Q ss_pred             HHHHHHHHh-CCCCEEEEcCCCCcchHHH---hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          166 LAAALIERY-FPGAKVLISSPTWGNHKNI---FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       166 l~~~~~~~~-~~gd~Vlv~~p~y~~~~~~---~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      ++...+... .+||+|+++...|+.+...   ++..|++++.+|.+  .++.+|++++++.+++   +++++++++++||
T Consensus        74 ~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~g~~~~~~l~~~i~~---~~~lv~i~~~~n~  148 (379)
T TIGR03402        74 TAIKSALAAQPEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVD--EEGRLDLEELRAAITD---DTALVSVMWANNE  148 (379)
T ss_pred             HHHHHHHHhcCCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccC--CCCcCCHHHHHHhcCC---CcEEEEEEcccCC
Confidence            885433212 4578999988888765443   34579999999983  3567999999999975   7888999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+++   +++|.++|+++|+++++|+++. ++..+.+         +...+.++++.|.+|.+|++|  +|++++   
T Consensus       149 tG~~~~---~~~I~~l~~~~g~~vivD~~~~-~g~~~~~---------~~~~~~D~~~~s~~K~~gp~G--~g~l~v---  210 (379)
T TIGR03402       149 TGTIFP---IEEIGEIAKERGALFHTDAVQA-VGKIPID---------LKEMNIDMLSLSGHKLHGPKG--VGALYI---  210 (379)
T ss_pred             eeeccc---HHHHHHHHHHcCCEEEEECccc-ccccccC---------cccCCCCEEEEcHHHcCCCCc--eEEEEE---
Confidence            999965   5679999999999999999954 4322111         122345678889999888888  788865   


Q ss_pred             ChhHHHHHHHHH-----HhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCC
Q 012647          322 SSDLAARVKSQL-----KRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK-DKSGK  395 (459)
Q Consensus       322 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~g~~~  395 (459)
                      .++..  +....     ....+.  +.++..+..++...+   ++.   .+.+++..++++++++++.+.|+ + +.  +
T Consensus       211 ~~~~~--~~p~~~g~~~~~~~~~--gt~~~~~~~~l~~al---~~~---~~~~~~~~~~~~~l~~~l~~~l~-~~~~--~  277 (379)
T TIGR03402       211 RKGTR--FRPLLRGGHQERGRRA--GTENVPGIVGLGKAA---ELA---TEHLEEENTRVRALRDRLEAGLL-ARIP--D  277 (379)
T ss_pred             CCCCC--CCCcccCCccCCCcCC--CCccHHHHHHHHHHH---HHH---HHhHHHHHHHHHHHHHHHHHHHH-hhCC--C
Confidence            33210  11111     000111  122222222222222   122   22356677888889999999887 5 42  1


Q ss_pred             CcccccCC----cc-ee-eecCCCHHHHHHHHhcccEEEcCC-------------------------C--cEEEccC-Ch
Q 012647          396 DWSFILRQ----IG-MF-SFTGLNKAQSDNMTNKWHVYMTKD-------------------------G--RISLAGL-SL  441 (459)
Q Consensus       396 ~~~~~~~~----~g-~f-~~~~l~~~~~~~ll~~~gI~v~~g-------------------------g--Ris~~~~-~~  441 (459)
                       +.+..+.    .+ +. .+.+.+.+.+...++++||.+.+|                         |  |+|++.+ |+
T Consensus       278 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~  356 (379)
T TIGR03402       278 -ARLNGDPTKRLPNTVNISFEYIEGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTE  356 (379)
T ss_pred             -EEEeCCCccCCCCEEEEEecCCCHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCH
Confidence             3333221    12 22 334566666555666789998753                         3  9999876 88


Q ss_pred             hhHHHHHHHHHHHHhhc
Q 012647          442 AKCEYLADAIIDSYHNV  458 (459)
Q Consensus       442 e~i~~~~~~l~~~~~~~  458 (459)
                      +||++++++|+++++++
T Consensus       357 ~di~~~~~~l~~~~~~~  373 (379)
T TIGR03402       357 EDIDYVLEVLPPIIARL  373 (379)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999988764

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.94  E-value=3.8e-25  Score=221.39  Aligned_cols=320  Identities=13%  Similarity=0.081  Sum_probs=210.0

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCC-----CcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP-----IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~-----~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      .+++++.|.|    ++++ |+.+.++..+.  .. ...|.+     ..|.+++++++++++...+|.+  .+++++  +.
T Consensus        21 ~~~~l~~g~~----~~~~-p~~~~~~~~~~--~~-~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~--~~~v~~--~~   88 (398)
T cd00613          21 SMSFLGSGTY----KHNP-PAVIKRNILEN--EF-YTAYTPYQPEISQGRLQALFELQTMLCELTGMD--VANASL--QD   88 (398)
T ss_pred             Cccccccccc----CCcC-cHHHHHHhccc--cC-cccCCCCChhhhhhHHHHHHHHHHHHHHHHCCC--ccceec--cC
Confidence            5699999998    6654 66666666665  22 245665     6899999999999988776643  346766  56


Q ss_pred             cchhHHHHHHHHHHHhCC--CCEEEEcCCCCcchHHHhhhCC----CCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEE
Q 012647          159 SGTGSLRLAAALIERYFP--GAKVLISSPTWGNHKNIFNDAR----VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI  232 (459)
Q Consensus       159 ggt~a~~l~~~~~~~~~~--gd~Vlv~~p~y~~~~~~~~~~G----~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~  232 (459)
                      +|+.+.+.+. ....+.+  ||+|++++|.|+.+...+...|    ++++.+|+.  +++.+|++.+++++.+   ++++
T Consensus        89 ~g~~~~~~~~-~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~---~t~~  162 (398)
T cd00613          89 EATAAAEAAG-LAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSD--EGGTVDLEALKEEVSE---EVAA  162 (398)
T ss_pred             chHHHHHHHH-HHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccC--CCCCcCHHHHHHhcCC---CeEE
Confidence            4544434332 2223455  9999999999999988888777    899999883  3467899999999875   6888


Q ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccC---
Q 012647          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY---  309 (459)
Q Consensus       233 ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~---  309 (459)
                      +++++|+ |||.+.  +.+++|+++|++||+++|+|+++.... ....         ....+.++++.|+||.+ +|   
T Consensus       163 viv~~~~-~~G~~~--~~l~~i~~la~~~g~~livD~~~~~~~-~~~~---------~~~~~~d~~~~s~~K~~-~p~g~  228 (398)
T cd00613         163 LMVQYPN-TLGVFE--DLIKEIADIAHSAGALVYVDGDNLNLT-GLKP---------PGEYGADIVVGNLQKTG-VPHGG  228 (398)
T ss_pred             EEEECCC-CCceec--chHHHHHHHHHhcCCEEEEEecccccc-CCCC---------hHHcCCCEEEeeccccC-CCCCC
Confidence            8888885 899992  446999999999999999999854322 1110         11224679999999998 55   


Q ss_pred             -CCCcceEEEEeCChhHHHHHHHHH--------------------------HhhccccccCCchHHHHHHHHHhCChhhH
Q 012647          310 -AERIGAMNVVCSSSDLAARVKSQL--------------------------KRLARPMYSNPPVHGARIVANVVGNPALF  362 (459)
Q Consensus       310 -G~RiG~~~~v~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~L~~~~~~  362 (459)
                       |+|+||+++   +++..+.+....                          .......+.+.+...+.++..+....   
T Consensus       229 Ggp~~g~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~---  302 (398)
T cd00613         229 GGPGAGFFAV---KKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLG---  302 (398)
T ss_pred             CCCceeEEEE---hhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhC---
Confidence             799999976   666443321000                          00001111122223333332222111   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCccee--eecCCC-------HHHHHHHHhcccEEEcC---
Q 012647          363 DEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF--SFTGLN-------KAQSDNMTNKWHVYMTK---  430 (459)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f--~~~~l~-------~~~~~~ll~~~gI~v~~---  430 (459)
                         .+.+++++++++++++++.+.|+ +++.    .. .+.+.++  +++.+.       .+++++|++ +||.+..   
T Consensus       303 ---~~g~~~~~~~~~~~~~~l~~~L~-~~~~----~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~L~~-~gi~~~~~~~  372 (398)
T cd00613         303 ---PEGLKEIAERAHLNANYLAKRLK-EVGG----VL-PFNGPFFHEFVLRLPPLYGIRAEDLAKALID-GGFHAPTMYL  372 (398)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHH-hcCC----cc-cCCCCeeEEEEEEcCCcchHHHHHHHHhhhh-cCcccccccc
Confidence               23457888999999999999999 8752    22 2223322  233221       234556665 5987754   


Q ss_pred             -C-C--cEEEccC-ChhhHHHHHHHH
Q 012647          431 -D-G--RISLAGL-SLAKCEYLADAI  451 (459)
Q Consensus       431 -g-g--Ris~~~~-~~e~i~~~~~~l  451 (459)
                       + +  |+|+... +++||++++++|
T Consensus       373 ~~~~~lRis~~~~~t~edid~~~~~L  398 (398)
T cd00613         373 PVDGTLMIEPTETETKEELDALLEAL  398 (398)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence             2 2  9987655 889999998864

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.94  E-value=1.8e-24  Score=217.90  Aligned_cols=337  Identities=15%  Similarity=0.101  Sum_probs=222.3

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...+|+..|..-..-|..  +|.|.+++.+.+++.. ..+.+..+..+|++++++++..       .++|++  +.||+
T Consensus        47 G~~ylD~~~g~~~~~lGh~--~p~v~~ai~~q~~~~~-~~~~~~~~~~~lae~l~~~~~~-------~~~v~~--~~sGs  114 (423)
T TIGR00713        47 GNEYIDYVLSWGPLILGHA--HPRVVEAVKEALERGT-SYGAPTEAEILLAKEIISRVPS-------VEMVRF--VNSGT  114 (423)
T ss_pred             CCEEEEccccccccccCCC--CHHHHHHHHHHHHhCC-cCCCCCHHHHHHHHHHHHhCCc-------ccEEEE--eCCHH
Confidence            4578999988763333443  7999999999887643 3233677889999999998643       257888  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhh---CCCCeeeeeeecC-------CCC---CCCHHHHHHHHHcCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND---ARVPWSEYRYYDP-------KTV---GLDFEGMIADIKAAPG  228 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~---~G~~v~~v~~~~~-------~~~---~~d~e~l~~~i~~~~~  228 (459)
                      +|++.+.++...+...++|+..+++|.++...+..   .|......|..+.       ...   ..|++.+++.++..++
T Consensus       115 eA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~  194 (423)
T TIGR00713       115 EATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGE  194 (423)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCC
Confidence            99999988776666779999999999987543322   1111111111000       000   0278999999874333


Q ss_pred             CcEEEE-eCCCCCCCCCCCC-HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc
Q 012647          229 GSFILL-HGCAHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (459)
Q Consensus       229 ~~~~ii-~~~p~NPTG~~~s-~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  306 (459)
                      ++++++ .+.++| +|.+++ ++.+++|.++|++||+++|+||+|.++..+.    .... ......+++   .+|||.+
T Consensus       195 ~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~----~~~~-~~~~~~pDi---~t~sK~l  265 (423)
T TIGR00713       195 EIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVAL----GGAQ-EYFGVEPDL---TTLGKII  265 (423)
T ss_pred             cEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCc----chhH-HHhCCCcch---hhhhhhh
Confidence            555555 468888 798877 6889999999999999999999998886531    1111 122223343   3799999


Q ss_pred             ccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhC---ChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012647          307 GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVG---NPALFDEWKAEMEMMAGRIKNVRQKL  383 (459)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~---~~~~~~~~~~~~~~~~~~~~~~~~~l  383 (459)
                      + +|+|+||+++   +++..+.+... .......+.+.+.+++.++...|+   +.++       ++..++..+.+++.|
T Consensus       266 ~-~G~pig~v~~---~~~i~~~~~~~-~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~-------~~~~~~~~~~~~~~l  333 (423)
T TIGR00713       266 G-GGLPVGAFGG---RREIMERLAPE-GPVYQAGTLSGNPLAMAAGLATLKLLDEEGV-------YTELDELAKRLAEGL  333 (423)
T ss_pred             c-CCCceeeeeE---HHHHHHhhCcC-CCeeeccCCCCCHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHHHHHH
Confidence            9 9999999976   77744443211 011122233556666666655443   3222       456666777777777


Q ss_pred             HHHHhhccCCCCCccc-ccCCcceee-ecCC------------CH----HHHHHHHhcccEEEcCCC----cEEEccCCh
Q 012647          384 FDSLSAKDKSGKDWSF-ILRQIGMFS-FTGL------------NK----AQSDNMTNKWHVYMTKDG----RISLAGLSL  441 (459)
Q Consensus       384 ~~~L~~~~g~~~~~~~-~~~~~g~f~-~~~l------------~~----~~~~~ll~~~gI~v~~gg----Ris~~~~~~  441 (459)
                      .+.++ ++++    .. +...|+++. +++.            +.    .+...+++ +||.+.+++    ||++.. ++
T Consensus       334 ~~~~~-~~~~----~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~~l~~~~-t~  406 (423)
T TIGR00713       334 SEVLE-DTGI----PHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLD-KGVFLPPSQFEACFLSAAH-TE  406 (423)
T ss_pred             HHHHH-hcCC----CeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHH-CCeEEecCCccceeeECCC-CH
Confidence            77777 7663    22 234555553 2321            11    24456666 699987654    888764 99


Q ss_pred             hhHHHHHHHHHHHHhhc
Q 012647          442 AKCEYLADAIIDSYHNV  458 (459)
Q Consensus       442 e~i~~~~~~l~~~~~~~  458 (459)
                      +++++++++|.++++++
T Consensus       407 ~~i~~~~~~l~~~l~~~  423 (423)
T TIGR00713       407 EDIENTIEAAEEVFAEL  423 (423)
T ss_pred             HHHHHHHHHHHHHHhhC
Confidence            99999999999998764

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.94  E-value=8.9e-25  Score=216.84  Aligned_cols=318  Identities=15%  Similarity=0.105  Sum_probs=208.0

Q ss_pred             cCCCCCCccCcHHHHHHHHHHhhcCCCC-CCCC-------CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHH
Q 012647           93 YRTEELQPYVLDVVKKAENLMLERGENK-EYLP-------IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSL  164 (459)
Q Consensus        93 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~-~Y~~-------~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~  164 (459)
                      |+|..+.+++++.+.+++.+.+...... ..++       .....++|+.+++++...     +++++++  |+|+++++
T Consensus         2 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~v~~--~~g~t~a~   74 (373)
T cd06453           2 YLDNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAP-----SPDEIIF--TRNTTEAI   74 (373)
T ss_pred             cccCccccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCC-----CCCeEEE--eCCHHHHH
Confidence            4566677777899999998877431100 0001       234568889999997543     1578988  99999999


Q ss_pred             HHHHHHHHHhC---CCCEEEEcCCCCcch----HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCC
Q 012647          165 RLAAALIERYF---PGAKVLISSPTWGNH----KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (459)
Q Consensus       165 ~l~~~~~~~~~---~gd~Vlv~~p~y~~~----~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~  237 (459)
                      +++.  .+...   +||+|++++++|+..    ....+..|++++.+|++  +++.+|++++++.+.+   +++++++++
T Consensus        75 ~~~~--~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~---~~~~v~~~~  147 (373)
T cd06453          75 NLVA--YGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVD--DDGQLDLEALEKLLTE---RTKLVAVTH  147 (373)
T ss_pred             HHHH--HHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecC--CCCCcCHHHHHHHhcC---CceEEEEeC
Confidence            9984  33344   899999999999764    33455789999999984  4678999999999976   678888999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEE
Q 012647          238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (459)
Q Consensus       238 p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (459)
                      ++||||.+.+   +++|+++|++||+++++|++|...... .     .    ....+.++++.|++|.+++  .++|+++
T Consensus       148 ~~~~tG~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~-~-----~----~~~~~~d~~~~s~~K~~~~--~g~g~~~  212 (373)
T cd06453         148 VSNVLGTINP---VKEIGEIAHEAGVPVLVDGAQSAGHMP-V-----D----VQDLGCDFLAFSGHKMLGP--TGIGVLY  212 (373)
T ss_pred             cccccCCcCC---HHHHHHHHHHcCCEEEEEhhhhcCcee-e-----e----ccccCCCEEEeccccccCC--CCcEEEE
Confidence            9999999954   678999999999999999997533211 0     1    1122345777899999985  4589986


Q ss_pred             EEeCChhHHHHHHHHHHhhc-----------------cccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012647          318 VVCSSSDLAARVKSQLKRLA-----------------RPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR  380 (459)
Q Consensus       318 ~v~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~  380 (459)
                      +   +++.++.+........                 +....+++..+..+....+..  +.   ++.+++++++.++++
T Consensus       213 ~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~--l~---~~g~~~~~~~~~~~~  284 (373)
T cd06453         213 G---KEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDY--LE---KIGMEAIAAHEHELT  284 (373)
T ss_pred             E---chHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHH--HH---HcCHHHHHHHHHHHH
Confidence            6   6664443332110000                 000012333332222222210  10   122467778888899


Q ss_pred             HHHHHHHhhccCCCCCccccc---CCcceeeec--CCCHHHHHHHHhcccEEEcCC--------------C--cEEEccC
Q 012647          381 QKLFDSLSAKDKSGKDWSFIL---RQIGMFSFT--GLNKAQSDNMTNKWHVYMTKD--------------G--RISLAGL  439 (459)
Q Consensus       381 ~~l~~~L~~~~g~~~~~~~~~---~~~g~f~~~--~l~~~~~~~ll~~~gI~v~~g--------------g--Ris~~~~  439 (459)
                      +++.+.|+ +++.   +++..   ..++++.+.  +.+.+.+.+.++++||.+.+|              +  |||++..
T Consensus       285 ~~l~~~l~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~  360 (373)
T cd06453         285 AYALERLS-EIPG---VRVYGDAEDRAGVVSFNLEGIHPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLY  360 (373)
T ss_pred             HHHHHHHh-cCCC---eEEeCCccccCCeEEEEECCcCHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEecCC
Confidence            99999998 7731   44442   234444332  334444444444479988643              2  9998854


Q ss_pred             -ChhhHHHHHHHH
Q 012647          440 -SLAKCEYLADAI  451 (459)
Q Consensus       440 -~~e~i~~~~~~l  451 (459)
                       +++++++++++|
T Consensus       361 ~t~~di~~~~~~l  373 (373)
T cd06453         361 NTEEEIDALVEAL  373 (373)
T ss_pred             CCHHHHHHHHhhC
Confidence             889999999874

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.94  E-value=1e-24  Score=215.91  Aligned_cols=316  Identities=14%  Similarity=0.050  Sum_probs=207.2

Q ss_pred             cCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEE
Q 012647          101 YVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV  180 (459)
Q Consensus       101 ~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~V  180 (459)
                      .+++.+.+++.+.. ......|.  .-+.++|+.++++++...    +++.|++  +.+|+++++.+  +.+.+.+||+|
T Consensus        15 ~~~~~~~~a~~~~~-~~~~~~~~--~~~~~~~~~l~~l~~~~~----~~~~i~~--~~~gt~~l~~~--~~~l~~~~~~v   83 (368)
T PRK13479         15 TTSRTVREAMLRDW-GSWDDDFN--ALTASVRAKLVAIATGEE----GYTCVPL--QGSGTFSVEAA--IGSLVPRDGKV   83 (368)
T ss_pred             CCCHHHHHHhCCCC-CCCChHHH--HHHHHHHHHHHHHhCCCC----CceEEEE--cCCcHHHHHHH--HHhccCCCCeE
Confidence            34788887776543 11111232  356788999999876431    1245777  89999999998  45556799999


Q ss_pred             EEcCCCCcch--HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 012647          181 LISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVI  258 (459)
Q Consensus       181 lv~~p~y~~~--~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~  258 (459)
                      +++.++|.+.  ...++..|++++.+|..  .++.+|++++++++++. ++++++.+++|+||||...+   +++|+++|
T Consensus        84 lv~~~~~~~~~~~~~~~~~g~~~~~i~~~--~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~tG~~~~---~~~i~~l~  157 (368)
T PRK13479         84 LVPDNGAYGARIAQIAEYLGIAHVVLDTG--EDEPPDAAEVEAALAAD-PRITHVALVHCETTTGILNP---LDEIAAVA  157 (368)
T ss_pred             EEEeCCchHHHHHHHHHHcCCcEEEEECC--CCCCCCHHHHHHHHHhC-CCCcEEEEEcccCccccccC---HHHHHHHH
Confidence            9999887665  46778899999999984  45679999999998753 24567778999999999954   67899999


Q ss_pred             HhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC-cccCCCCcceEEEEeCChhHHHHHHHHHHh--
Q 012647          259 QEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN-LGLYAERIGAMNVVCSSSDLAARVKSQLKR--  335 (459)
Q Consensus       259 ~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~--  335 (459)
                      +++|+++|+|+ |+.++..+.     .    +...+..+++.|++|. +|++|  +||+++   +++.++.+......  
T Consensus       158 ~~~~~~livDa-~~~~g~~~~-----~----~~~~~~d~~v~s~~K~l~g~~G--~G~l~~---~~~~~~~~~~~~~~~~  222 (368)
T PRK13479        158 KRHGKRLIVDA-MSSFGAIPI-----D----IAELGIDALISSANKCIEGVPG--FGFVIA---RRSELEACKGNSRSLS  222 (368)
T ss_pred             HHcCCEEEEEc-ccccCCccc-----c----ccccCceEEEecCccccccCCC--ceEEEE---CHHHHHHhhcCCCCee
Confidence            99999999995 466653211     1    1122334677899996 47788  699977   77755544321100  


Q ss_pred             ------h-----ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCC-
Q 012647          336 ------L-----ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ-  403 (459)
Q Consensus       336 ------~-----~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~-  403 (459)
                            .     ......+++..++.++...+..  +.+  ...+++..++++++++++.+.|+ ++|    ++...+. 
T Consensus       223 ~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~--l~~--~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~  293 (368)
T PRK13479        223 LDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLE--LEE--EGGVPARGARYANNQRTLVAGMR-ALG----FEPLLDAE  293 (368)
T ss_pred             ecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHH--HHH--hhCHHHHHHHHHHHHHHHHHHHH-HcC----CcccCCch
Confidence                  0     0010013333332332222211  000  01246677899999999999999 887    3433221 


Q ss_pred             ----cceeeec-C---CCH-HHHHHHHhcccEEEcCCC-------cEEE-ccCChhhHHHHHHHHHHHHhhc
Q 012647          404 ----IGMFSFT-G---LNK-AQSDNMTNKWHVYMTKDG-------RISL-AGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       404 ----~g~f~~~-~---l~~-~~~~~ll~~~gI~v~~gg-------Ris~-~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                          +...++. .   .+. ++.+.|.+ +||.+.+|.       ||+. +..++++++.++++|+++++++
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gi~v~~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~  364 (368)
T PRK13479        294 IQSPIIVTFHAPADPAYDFKEFYERLKE-QGFVIYPGKLTQVDTFRIGCIGDVDAADIRRLVAAIAEALYWM  364 (368)
T ss_pred             hcCceEEEEECCCCCCcCHHHHHHHHHH-CCEEEecCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence                1122332 2   233 44556555 599998862       9985 5558999999999999998764

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.94  E-value=9.4e-25  Score=219.66  Aligned_cols=338  Identities=12%  Similarity=0.024  Sum_probs=212.7

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCC----cccHHHHHHHHHHHhcCCCCccccCceEEeec
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI----EGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~----~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (459)
                      +...|||..|......+.  .+|.|.+++.+.+...  ..|...    .-..++.+.+++++    +.  ..+++++  +
T Consensus        35 G~~~id~~~~~~~~~lG~--~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~----~~--~~~~v~~--~  102 (413)
T cd00610          35 GNRYLDFLSGIGVLNLGH--NHPEVVEALKEQLAKL--THFSLGFFYNEPAVELAELLLALT----PE--GLDKVFF--V  102 (413)
T ss_pred             CCEEEEcCccHHhhccCC--CCHHHHHHHHHHHHhC--cCccCcccCCHHHHHHHHHHHHhC----CC--CCCEEEE--c
Confidence            357899988754233343  2788999998888542  334332    23345555555553    22  2678999  9


Q ss_pred             ccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhC-------------CCCeeeeeeecC----CCCCCCHHHHH
Q 012647          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA-------------RVPWSEYRYYDP----KTVGLDFEGMI  220 (459)
Q Consensus       158 ~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-------------G~~v~~v~~~~~----~~~~~d~e~l~  220 (459)
                      +||++++..+.+++..+.++++|++.+++|..+.......             +.+++.+|.++.    ..+..|++.++
T Consensus       103 ~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~  182 (413)
T cd00610         103 NSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALE  182 (413)
T ss_pred             CcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHH
Confidence            9999999999776655678999999999998764433322             224566665311    12445899999


Q ss_pred             HHHHcCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012647          221 ADIKAAPGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (459)
Q Consensus       221 ~~i~~~~~~~~~ii~~~p~NPTG~~~-s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~  299 (459)
                      +.+++.+.+.+++++...+|++|.++ +++.+++|.++|++||+++|+||+|.+++..+   ..... ......++   +
T Consensus       183 ~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g---~~~~~-~~~~~~~d---~  255 (413)
T cd00610         183 EALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTG---KMFAF-EHFGVEPD---I  255 (413)
T ss_pred             HHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---chhhH-hhcCCCCC---e
Confidence            99876444566777777778889876 77779999999999999999999999875322   11111 11122223   3


Q ss_pred             EcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012647          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV  379 (459)
Q Consensus       300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~  379 (459)
                      .||||.++. |+|+||+++   +++.++.+.  ........+.+.+.+++.++...|+.   .   .+  +...++++++
T Consensus       256 ~t~sK~l~~-g~~~g~~~~---~~~~~~~~~--~~~~~~~~t~~~~~~~~~a~~a~l~~---l---~~--~~~~~~~~~~  321 (413)
T cd00610         256 VTLGKGLGG-GLPLGAVLG---REEIMDAFP--AGPGLHGGTFGGNPLACAAALAVLEV---L---EE--EGLLENAAEL  321 (413)
T ss_pred             EEEcccccC-ccccEEEEE---cHHHHHhhc--cCCCCCCCCCCcCHHHHHHHHHHHHH---H---Hh--ccHHHHHHHH
Confidence            489999995 899999866   777444430  12222222234455555555444321   0   11  2445667777


Q ss_pred             HHHHHHHHhhccCCC-CCcccccCCcceeeecCC------------C-HHHHHHHHhcccEEEcCCC----cEEEccC-C
Q 012647          380 RQKLFDSLSAKDKSG-KDWSFILRQIGMFSFTGL------------N-KAQSDNMTNKWHVYMTKDG----RISLAGL-S  440 (459)
Q Consensus       380 ~~~l~~~L~~~~g~~-~~~~~~~~~~g~f~~~~l------------~-~~~~~~ll~~~gI~v~~gg----Ris~~~~-~  440 (459)
                      .+++.+.|+ ++... +......+. |.++|+.+            . .++.+.|++ +||.+.|++    |++++.. +
T Consensus       322 ~~~l~~~l~-~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gv~v~~~~~~~lR~~~~~~~t  398 (413)
T cd00610         322 GEYLRERLR-ELAEKHPLVGDVRGR-GLMIGIELVKDRATKPPDKELAAKIIKAALE-RGLLLRPSGGNVIRLLPPLIIT  398 (413)
T ss_pred             HHHHHHHHH-HHHhhCCcEEEeecC-ceEEEEEEecCCCcCCcchHHHHHHHHHHHH-CCeEEeecCCCEEEEECCCcCC
Confidence            777777776 54210 001112334 44444322            1 233555555 599999973    8876654 8


Q ss_pred             hhhHHHHHHHHHHHH
Q 012647          441 LAKCEYLADAIIDSY  455 (459)
Q Consensus       441 ~e~i~~~~~~l~~~~  455 (459)
                      ++++++++++|.+++
T Consensus       399 ~~~i~~~~~~l~~~l  413 (413)
T cd00610         399 EEEIDEGLDALDEAL  413 (413)
T ss_pred             HHHHHHHHHHHHHhC
Confidence            899999999998764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.94  E-value=4.2e-24  Score=210.51  Aligned_cols=310  Identities=17%  Similarity=0.115  Sum_probs=205.8

Q ss_pred             CcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEE
Q 012647          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL  181 (459)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vl  181 (459)
                      +++.+.+++...... ....|.  .-..++|+.++++++...    +...|++  +.||++++..+  +...+.+||+|+
T Consensus        10 ~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~la~~~~~~~----~~~~i~~--~~~gt~~l~~~--~~~~~~~~~~vi   78 (355)
T TIGR03301        10 TSATVRDAMLVDWCH-WDSEFN--DVTDQVRDRLLALAGGDD----NHTCVLL--QGSGTFAVEAT--IGSLVPRDGKLL   78 (355)
T ss_pred             CCHHHHHHhhhhccC-CCHHHH--HHHHHHHHHHHHHhcCCC----CCcEEEE--eCCcHHHHHHH--HHhccCCCCeEE
Confidence            578888888773311 112342  446788999999875541    1235667  89999999998  444466788877


Q ss_pred             EcCCCCcc--hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 012647          182 ISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQ  259 (459)
Q Consensus       182 v~~p~y~~--~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~  259 (459)
                      +.++.+.+  +...++..|.+++.++.  ++++.+|++++++.+++. ++.+++++++++||||..   .++++|+++|+
T Consensus        79 ~~~~~~~~~~~~~~a~~~g~~~~~i~~--~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~~G~~---~~~~~i~~l~~  152 (355)
T TIGR03301        79 VLINGAYGERLAKICEYLGIPHTDLNF--SEYEPPDLNRIEEALAAD-PDITHVATVHHETTTGIL---NPLEAIAKVAR  152 (355)
T ss_pred             EECCCchhhHHHHHHHHcCCceEEEec--CCCCCCCHHHHHHHHHhC-CCceEEEEEecCCcccch---hHHHHHHHHHH
Confidence            77665443  45677889999999998  345789999999999763 355677778899999999   55889999999


Q ss_pred             hcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc-ccCCCCcceEEEEeCChhHHHHHHHH------
Q 012647          260 EKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARVKSQ------  332 (459)
Q Consensus       260 ~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~------  332 (459)
                      +||+++|+|++ +.++..+     ..    +...+.++++.|++|.+ |++|  +||+++   +++.++.+...      
T Consensus       153 ~~~~~livD~~-~s~g~~~-----~~----~~~~~~d~~~~s~~K~l~~~~G--~g~~~~---~~~~~~~~~~~~~~~~~  217 (355)
T TIGR03301       153 SHGAVLIVDAM-SSFGAIP-----ID----IEELDVDALIASANKCLEGVPG--FGFVIA---RRDLLEASAGNARSLYL  217 (355)
T ss_pred             HcCCEEEEEec-cccCCcc-----cc----hhhcCccEEEecCCcccccCCc--eeEEEE---CHHHHHHhhCCCCCcee
Confidence            99999999986 4444211     11    12234568899999986 6666  799977   77765554310      


Q ss_pred             --------HHhhccccccCCchHHHHHHHHHhCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC-
Q 012647          333 --------LKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAE-MEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR-  402 (459)
Q Consensus       333 --------~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~-  402 (459)
                              +.+. .....+++..++.++...|..  +.   .+. +++..++++++++++.+.|+ ++|    +++..+ 
T Consensus       218 ~~~~~~~~~~~~-~~~~~t~~~~~~~a~~~al~~--~~---~~g~~~~~~~~~~~~~~~~~~~L~-~~g----~~~~~~~  286 (355)
T TIGR03301       218 DLYDQWAYMEKT-GKWRFTPPTHTVYAFAQALEE--LE---AEGGVPARIARYRRNRELLVDGLR-ALG----FQPLLPE  286 (355)
T ss_pred             eHHHHHHHhhhc-CCCCCCCcHHHHHHHHHHHHH--HH---HcccHHHHHHHHHHHHHHHHHHHH-HcC----CeeecCC
Confidence                    0000 011113454444444333321  10   111 46777888999999999999 877    444332 


Q ss_pred             --CcceeeecCC------CH-HHHHHHHhcccEEEcCCC-------cEEEc-cCChhhHHHHHHHHHHHH
Q 012647          403 --QIGMFSFTGL------NK-AQSDNMTNKWHVYMTKDG-------RISLA-GLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       403 --~~g~f~~~~l------~~-~~~~~ll~~~gI~v~~gg-------Ris~~-~~~~e~i~~~~~~l~~~~  455 (459)
                        .+++++|+.+      +. ++.++|. ++||.+.+++       ||++. ..++++++.++++|++++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~i~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~  355 (355)
T TIGR03301       287 RWQSPIIVSFLYPDDPDFDFDDFYQELK-ERGFVIYPGKLTLADTFRIGTIGEIDAADIERLLEAIKDAL  355 (355)
T ss_pred             CCCCCcEEEEECCCCCcchHHHHHHHHH-HCCEEEECCccccccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence              2344555432      22 3344554 4699998873       99874 448899999999998753

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.94  E-value=3.9e-24  Score=213.45  Aligned_cols=323  Identities=13%  Similarity=0.037  Sum_probs=214.7

Q ss_pred             CCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCC
Q 012647           98 LQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG  177 (459)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~g  177 (459)
                      ++..+++.|.+++.+...     .| ...+..++++.+.+.+....+.. ..+.+++  +++||++++.+  +...+.+|
T Consensus        16 GP~~~~~~V~~a~~~~~~-----~~-~~~~~~~~~~~~~~~l~~~~g~~-~~~~vi~--~~~gt~a~~~a--~~~~~~~G   84 (401)
T PLN02409         16 GPVNIPERVLRAMNRPNE-----DH-RSPAFPALTKELLEDVKYIFKTK-SGTPFIF--PTTGTGAWESA--LTNTLSPG   84 (401)
T ss_pred             CCCCCCHHHHHHhcCCCC-----CC-CCHHHHHHHHHHHHHHHHHhCCC-CCCEEEE--eCCcHHHHHHH--HHhcCCCC
Confidence            445568999988866431     12 13345566666665554444432 1235666  78899999887  44457799


Q ss_pred             CEEEEcCCCCcch--HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCC-CCcEEEEeCCCCCCCCCCCCHHHHHHH
Q 012647          178 AKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP-GGSFILLHGCAHNPTGIDPTPEQWEKI  254 (459)
Q Consensus       178 d~Vlv~~p~y~~~--~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~-~~~~~ii~~~p~NPTG~~~s~~~l~~i  254 (459)
                      |+|+++++.|+.+  ...++..|++++.++.+  .+..+|++.+++++++.+ ++++++++++++||||.+++.+++.++
T Consensus        85 d~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~--~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l  162 (401)
T PLN02409         85 DKVVSFRIGQFSLLWIDQMQRLNFDVDVVESP--WGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKL  162 (401)
T ss_pred             CEEEEeCCCchhHHHHHHHHHcCCceEEEECC--CCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHH
Confidence            9999999988655  46778889999999984  344689999999998521 267888889999999999876666555


Q ss_pred             HHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHH-
Q 012647          255 ADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQL-  333 (459)
Q Consensus       255 ~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~-  333 (459)
                      ++ |+++|+++|+|+++. ++..+.+         ++..+.++++.|.+|.++.| .++||+++   +++.++++.... 
T Consensus       163 ~~-~~~~g~~~vvD~v~s-~g~~~id---------~~~~~~D~~~~s~~K~l~~P-~G~G~l~~---~~~~~~~~~~~~~  227 (401)
T PLN02409        163 LD-CAQHPALLLVDGVSS-IGALDFR---------MDEWGVDVALTGSQKALSLP-TGLGIVCA---SPKALEASKTAKS  227 (401)
T ss_pred             Hh-hhccCcEEEEEcccc-cCCcccc---------ccccCccEEEEcCccccCcC-CCcceeEE---CHHHHHHHhcCCC
Confidence            55 999999999999954 4422111         12234567888889998643 25999977   777655543210 


Q ss_pred             -----------Hhhccc-c-ccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012647          334 -----------KRLARP-M-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  400 (459)
Q Consensus       334 -----------~~~~~~-~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  400 (459)
                                 ...... . ..+++...+.++...++   +..  ...+++++++++++++++.+.|+ ++|    +++.
T Consensus       228 ~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~---~~~--~~G~e~i~~~~~~l~~~l~~~L~-~~g----~~~~  297 (401)
T PLN02409        228 PRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALD---LIF--EEGLENVIARHARLGEATRLAVE-AWG----LKLC  297 (401)
T ss_pred             CCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHH---HHH--HhhHHHHHHHHHHHHHHHHHHHH-HcC----Ceec
Confidence                       000000 1 11344434444433332   111  23468889999999999999999 887    3444


Q ss_pred             cCC----cceeeec----CCCH-HHHHHHHhcccEEEcCC-----C---cEEEccC-ChhhHHHHHHHHHHHHhhc
Q 012647          401 LRQ----IGMFSFT----GLNK-AQSDNMTNKWHVYMTKD-----G---RISLAGL-SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       401 ~~~----~g~f~~~----~l~~-~~~~~ll~~~gI~v~~g-----g---Ris~~~~-~~e~i~~~~~~l~~~~~~~  458 (459)
                      .+.    .+...++    +++. ++...+++++||.+..|     |   ||+..+. +.+++..++++|.+++.++
T Consensus       298 ~~~~~~~s~~v~~~~~p~~~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~  373 (401)
T PLN02409        298 TKKPEWRSDTVTAVVVPEGIDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKDV  373 (401)
T ss_pred             cCChhhcccceEEEeCCCCCCHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            332    1122222    3454 44568888899999876     2   9987665 8899999999999988764

>PLN02242 methionine gamma-lyase

Probab=99.93  E-value=4.5e-24  Score=212.49  Aligned_cols=222  Identities=15%  Similarity=0.129  Sum_probs=161.7

Q ss_pred             CCC--CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh----
Q 012647          121 EYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----  194 (459)
Q Consensus       121 ~Y~--~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----  194 (459)
                      .|+  +..-..+|++.+|++...        +.+++  ++||++++.++  +.+.+.+||+|+++.|.|..+...+    
T Consensus        69 ~Y~r~~~Pt~~~LE~~lA~l~g~--------~~~l~--~~sG~~Ai~~a--l~al~~~GD~Vl~~~~~Y~~~~~~~~~~~  136 (418)
T PLN02242         69 IYSRHFNPTVLNLGRQMAALEGT--------EAAYC--TASGMSAISSV--LLQLCSSGGHVVASNTLYGGTHALLAHFL  136 (418)
T ss_pred             cccCCCChhHHHHHHHHHHHhCC--------CeEEE--EccHHHHHHHH--HHHHhCCCCEEEEcCCcHHHHHHHHHHhh
Confidence            454  456678999999998643        34566  89999999998  5555789999999999998887665    


Q ss_pred             -hhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCC
Q 012647          195 -NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG  273 (459)
Q Consensus       195 -~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~  273 (459)
                       +..|++++.++.       .|++.+++++++  .+++++++++|+||||.+   .++++|+++|++||+++|+|++|..
T Consensus       137 ~~~~G~~~~~~d~-------~d~e~l~~~i~~--~~tklV~lesp~NPtG~v---~dl~~I~~la~~~gi~livDea~~~  204 (418)
T PLN02242        137 PRKCNITTTFVDI-------TDLEAVKKAVVP--GKTKVLYFESISNPTLTV---ADIPELARIAHEKGVTVVVDNTFAP  204 (418)
T ss_pred             hhccCceEEEcCC-------CCHHHHHHhcCc--CCCEEEEEecCCCCCCcc---cCHHHHHHHHHHhCCEEEEECCCCc
Confidence             346777666654       288999998865  248889999999999999   5788999999999999999999976


Q ss_pred             CCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc-ceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHH
Q 012647          274 FASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIV  352 (459)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (459)
                      +.+.       ..     ..+.++++.||||.++.+|+|+ ||+++   +++.++.+......  .....+++...|.++
T Consensus       205 ~~~~-------~~-----~~g~divv~S~SK~l~g~g~~~gG~iv~---~~~li~~l~~~~~~--~~~~~g~~~~~~~A~  267 (418)
T PLN02242        205 MVLS-------PA-----RLGADVVVHSISKFISGGADIIAGAVCG---PAELVNSMMDLHHG--ALMLLGPTMNPKVAF  267 (418)
T ss_pred             cCCC-------HH-----HcCCcEEEEeCccccCCCCCceEEEEEc---CHHHHHHHHHHhhh--hhhccCCCCCHHHHH
Confidence            6542       11     1135789999999999999985 77654   77755554432110  011224444455565


Q ss_pred             HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          353 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       353 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                      ..+++...        +....++++++++++.+.|+ +++
T Consensus       268 l~~~~l~t--------l~~r~~~~~~~a~~la~~L~-~~~  298 (418)
T PLN02242        268 ELSERLPH--------LSLRMKEHCRRAMEYAKRMK-ELG  298 (418)
T ss_pred             HHHcCCCc--------HHHHHHHHHHHHHHHHHHHH-hCC
Confidence            55544322        34566788999999999999 775

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.93  E-value=7e-24  Score=210.86  Aligned_cols=329  Identities=14%  Similarity=0.062  Sum_probs=211.5

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-------CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-------NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-------~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (459)
                      +..|||..=.     ...++++.+.+++.+......       ...+.......++|+.+|++++.        +++++ 
T Consensus        18 ~~~~~~~~~~-----~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~--------~~~~~-   83 (387)
T PRK09331         18 EEFINLDPIQ-----RGGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGM--------DEARV-   83 (387)
T ss_pred             ccccccChhh-----cCCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCC--------CcEEE-
Confidence            3566665322     122348889999988773211       11122233578999999999743        35677 


Q ss_pred             ecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC----CCCcE
Q 012647          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA----PGGSF  231 (459)
Q Consensus       156 ~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~----~~~~~  231 (459)
                       ++|+++++.++  +...+.+||+|+++.++|......++..|++++.+|...++++.+|++.+++++++.    .++++
T Consensus        84 -~~g~t~a~~~a--l~~l~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~  160 (387)
T PRK09331         84 -THGAREGKFAV--MHSLCKKGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPA  160 (387)
T ss_pred             -eCCHHHHHHHH--HHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCE
Confidence             89999999988  444578999999999998777667888999999999842346789999999999752    13678


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCC
Q 012647          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE  311 (459)
Q Consensus       232 ~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~  311 (459)
                      ++++++|+||||..   .++++|+++|++||+++++|++|..-... .  +.       ...+.++++.|++|.++ .+.
T Consensus       161 lV~l~~~~~~tG~~---~~l~~I~~la~~~g~~livD~a~~~g~~~-~--~~-------~~~g~D~~~~s~~K~l~-~~~  226 (387)
T PRK09331        161 LALLTHVDGNYGNL---ADAKKVAKVAHEYGIPFLLNGAYTVGRMP-V--DG-------KKLGADFIVGSGHKSMA-ASA  226 (387)
T ss_pred             EEEEECCCCCCccc---ccHHHHHHHHHHcCCEEEEECCcccCCcC-C--CH-------HHcCCCEEEeeCccccc-CCC
Confidence            88899999999988   78999999999999999999996632211 1  11       12235688999999998 456


Q ss_pred             CcceEEEEeCChhHHHHHHHHHHhhc--c-cccc-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          312 RIGAMNVVCSSSDLAARVKSQLKRLA--R-PMYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSL  387 (459)
Q Consensus       312 RiG~~~~v~~~~~~~~~~~~~~~~~~--~-~~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  387 (459)
                      |+||+++   +++.++.+........  . ..+. +.+.....++...+   +   .+.+.++ ..++..++.+++.+.|
T Consensus       227 ~~G~l~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal---~---~~~~~~~-~~~~~~~~~~~l~~~L  296 (387)
T PRK09331        227 PSGVLAT---TEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASF---P---HVVERVK-RWDEEVKKARWFVDEL  296 (387)
T ss_pred             CEEEEEE---CHHHHhhcccccCCCcccceeeeceecCchHHHHHHHHH---H---HHHHHHH-HHHHHHHHHHHHHHHH
Confidence            8999876   7775544433211000  0 0011 11111111111111   1   1122232 3344566777889999


Q ss_pred             hhcc-CCCCCccccc---CCcceeee--cCC---------C-HHHHHHHHhcccEEEcCCC-----cEEEccCChhhHHH
Q 012647          388 SAKD-KSGKDWSFIL---RQIGMFSF--TGL---------N-KAQSDNMTNKWHVYMTKDG-----RISLAGLSLAKCEY  446 (459)
Q Consensus       388 ~~~~-g~~~~~~~~~---~~~g~f~~--~~l---------~-~~~~~~ll~~~gI~v~~gg-----Ris~~~~~~e~i~~  446 (459)
                      + ++ |    +++..   ...++..+  .++         + .++.+.|. ++||...+.|     |+...+.+++++++
T Consensus       297 ~-~l~g----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~gI~~~~~~~~~i~ri~~~g~t~~di~~  370 (387)
T PRK09331        297 E-KIEG----FKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELK-KRGIHGIKPGATKEFKLSTYGLTWEQVEY  370 (387)
T ss_pred             h-cCCC----EEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHHH-HcCceEEccCCceEEEEEeccCCHHHHHH
Confidence            8 88 5    45442   22222211  111         1 23455665 4699854443     66654458999999


Q ss_pred             HHHHHHHHHhhc
Q 012647          447 LADAIIDSYHNV  458 (459)
Q Consensus       447 ~~~~l~~~~~~~  458 (459)
                      ++++|+++++++
T Consensus       371 l~~aL~~i~~~~  382 (387)
T PRK09331        371 VADAFKEIAEKY  382 (387)
T ss_pred             HHHHHHHHHHhc
Confidence            999999988764

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.93  E-value=9.3e-24  Score=208.66  Aligned_cols=316  Identities=14%  Similarity=0.030  Sum_probs=205.1

Q ss_pred             CCccCcHHHHHHHHHHhhcCCCCCCCC--CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhC
Q 012647           98 LQPYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF  175 (459)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~  175 (459)
                      ++..+++.|.+++....     ..+.+  ..-++++|+.++++++...    .++.|++  |.|||++++.+  +.+.+.
T Consensus        10 gp~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~r~~la~l~~~~~----~~~~i~~--t~~~t~al~~~--~~~l~~   76 (363)
T TIGR02326        10 GPLTTSRTVKEAMLFDW-----CTWDSDYNIVVEQIRQQLLALATAEE----GYTSVLL--QGSGTFAVEAV--IGSAVP   76 (363)
T ss_pred             CCCCCCHHHHHHhCCCC-----CCCChHHHHHHHHHHHHHHHHhCCCC----CceEEEE--cCCCHHHHHHH--HHhcCC
Confidence            33445677777665432     11221  1234677888998876531    0236888  99999999998  444467


Q ss_pred             CCCEEEEcCCCCcch--HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHH
Q 012647          176 PGAKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEK  253 (459)
Q Consensus       176 ~gd~Vlv~~p~y~~~--~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~  253 (459)
                      +||.|++..+++.+.  ...++..|++++.+|+  +.++.+|++.++++++..+ +.+++.+++++||||+.+   ++++
T Consensus        77 ~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~--~~~~~~d~~~l~~~l~~~~-~~~~v~~~~~~~~tG~~~---~i~~  150 (363)
T TIGR02326        77 KDGKLLVVINGAYGARIVQIAEYLGIPHHVVDT--GEVEPPDVVEVEAILAADP-AITHIALVHCETTTGILN---PIEA  150 (363)
T ss_pred             CCCeEEEEeCChhhHHHHHHHHHcCCceEEEeC--CCCCCCCHHHHHHHHhhCC-CccEEEEEeecCCccccC---cHHH
Confidence            888888877766544  4667889999999998  4467899999999998632 445677788999999995   4678


Q ss_pred             HHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc-ccCCCCcceEEEEeCChhHHHHHHHH
Q 012647          254 IADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARVKSQ  332 (459)
Q Consensus       254 i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~  332 (459)
                      |+++|++||+++++|++ +.++..+.     .    +...+..+++.|++|.+ |++|  +||+++   +++.++.+...
T Consensus       151 I~~l~~~~g~~livD~~-~~~g~~~~-----~----~~~~~~D~~~~s~~K~l~~p~G--~G~l~~---~~~~~~~~~~~  215 (363)
T TIGR02326       151 VAKLAHRHGKVTIVDAM-SSFGGIPI-----D----IAELHIDYLISSANKCIQGVPG--FGFVIA---RQAELAACKGN  215 (363)
T ss_pred             HHHHHHHcCCEEEEEcc-ccccCccc-----c----hhhcCccEEEecCccccccCCc--ceEEEE---CHHHHHHhhcC
Confidence            99999999999999987 55543211     1    12234568889999976 6667  799976   66655443210


Q ss_pred             --------------HHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcc
Q 012647          333 --------------LKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWS  398 (459)
Q Consensus       333 --------------~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~  398 (459)
                                    ...........++...+.+....+..  +..  ...+++.+++++++++++++.|+ ++|+    .
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~--l~~--~g~~~~~~~~~~~~~~~l~~~L~-~~g~----~  286 (363)
T TIGR02326       216 ARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLE--LEK--EGGVAARHQRYQQNQKTLVAGMR-ALGF----E  286 (363)
T ss_pred             CCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHH--HHH--hhCHHHHHHHHHHHHHHHHHHHH-HcCC----e
Confidence                          00000001113444444443333321  100  01246678999999999999998 8873    4


Q ss_pred             cccC---Cccee---eecC---CCHHHHHHHHhcccEEEcCCC-------cEEE-ccCChhhHHHHHHHHHHHHh
Q 012647          399 FILR---QIGMF---SFTG---LNKAQSDNMTNKWHVYMTKDG-------RISL-AGLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       399 ~~~~---~~g~f---~~~~---l~~~~~~~ll~~~gI~v~~gg-------Ris~-~~~~~e~i~~~~~~l~~~~~  456 (459)
                      ...+   ..+..   .+..   ++...+...++++||.+.+|.       ||++ +..+.++++.++++|++++.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~l~  361 (363)
T TIGR02326       287 PLLDDEIQSPIITSFYSPEDPDYRFADFYQRLKEQGFVIYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKAMY  361 (363)
T ss_pred             eccCcccCCceEEEEECCCCCCCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence            4322   23332   2222   233344444455699998883       9985 44589999999999998875

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.93  E-value=5.2e-24  Score=213.03  Aligned_cols=329  Identities=15%  Similarity=0.092  Sum_probs=212.3

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCC-CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      +...+||..|.--+..|.  -+|.|.+++.+.+++... .......-..++.+.++++.    +    .+.+.+  +++|
T Consensus        39 G~~~iD~~~~~~~~~lGh--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~----~~~~~~--~~sG  106 (403)
T PRK05093         39 GKEYIDFAGGIAVTALGH--CHPALVKALKEQGEKLWHISNVFTNEPALRLAKKLIDAT----F----AERVFF--ANSG  106 (403)
T ss_pred             CCEEEEcCcCHHhccCCC--CCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHhhC----C----CCEEEE--eCch
Confidence            356899987743233354  378899999888754210 11111112235555555542    1    257888  9999


Q ss_pred             hhHHHHHHHHHHHhC------CCCEEEEcCCCCcchHH-HhhhCC------------CCeeeeeeecCCCCCCCHHHHHH
Q 012647          161 TGSLRLAAALIERYF------PGAKVLISSPTWGNHKN-IFNDAR------------VPWSEYRYYDPKTVGLDFEGMIA  221 (459)
Q Consensus       161 t~a~~l~~~~~~~~~------~gd~Vlv~~p~y~~~~~-~~~~~G------------~~v~~v~~~~~~~~~~d~e~l~~  221 (459)
                      ++|+..+.++.....      ..++|+..+-+|.+... .+...|            .+++.+|.       .|++.+++
T Consensus       107 seA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~  179 (403)
T PRK05093        107 AEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF-------NDLAAVKA  179 (403)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCC-------CCHHHHHH
Confidence            999999988765542      23678888888776532 222111            12222222       27899998


Q ss_pred             HHHcCCCCcEEEEeCCCCCCCCCCC--CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012647          222 DIKAAPGGSFILLHGCAHNPTGIDP--TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (459)
Q Consensus       222 ~i~~~~~~~~~ii~~~p~NPTG~~~--s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~  299 (459)
                      .+.+   ++++++++ |.||+|.++  +.+.+++|.++|++||+++|+||+|.++++.+.   .++... .+..++   +
T Consensus       180 ~l~~---~~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~---~~~~~~-~~~~pd---i  248 (403)
T PRK05093        180 VIDD---HTCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGD---LFAYMH-YGVTPD---I  248 (403)
T ss_pred             HhcC---CeEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc---chhhhh-cCCCCC---E
Confidence            8864   66677765 888887765  899999999999999999999999998876531   222111 122223   4


Q ss_pred             EcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012647          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV  379 (459)
Q Consensus       300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~  379 (459)
                      .||||.++ +|+|+||+++   +++    +.+.+.......+.+.+.+.|.++...|+..      .  -.+..++++++
T Consensus       249 ~s~sK~l~-~G~rig~vv~---~~~----i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~------~--~~~~~~~~~~~  312 (403)
T PRK05093        249 LTSAKALG-GGFPIGAMLT---TAE----IASHFKVGTHGSTYGGNPLACAVAEAVFDII------N--TPEVLEGVKAR  312 (403)
T ss_pred             EEeccccc-CCcceEEEEE---cHH----HHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH------h--hccHHHHHHHH
Confidence            58999999 8999999976   777    4444433222333356666777776644211      0  12445788889


Q ss_pred             HHHHHHHHhhccCCCCCcccccCCcceeeecCC-------CHHHHHHHHhcccEEEcCCC----cEEEccC-ChhhHHHH
Q 012647          380 RQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-------NKAQSDNMTNKWHVYMTKDG----RISLAGL-SLAKCEYL  447 (459)
Q Consensus       380 ~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-------~~~~~~~ll~~~gI~v~~gg----Ris~~~~-~~e~i~~~  447 (459)
                      ++++.+.|+ +++....+....+.+|+++|+.+       +.++++.++++ ||.+.++|    ||+++.. ++++++++
T Consensus       313 ~~~l~~~L~-~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~l~~~-Gv~v~~~g~~~lRl~~~~~~~~~~i~~~  390 (403)
T PRK05093        313 RQRFVDGLQ-KINQKYGVFSEIRGMGLLIGAELKPQYKGRARDFLNAAAEE-GVMVLVAGPDVLRFAPSLVIEEADIDEG  390 (403)
T ss_pred             HHHHHHHHH-HHHhhCCCeEeEeeCceEEEEEecCcchhHHHHHHHHHHHC-CeEEecCCCCEEEEeCCCCCCHHHHHHH
Confidence            999999998 76311111122345577777643       23557777774 99999865    8865544 89999999


Q ss_pred             HHHHHHHHhhc
Q 012647          448 ADAIIDSYHNV  458 (459)
Q Consensus       448 ~~~l~~~~~~~  458 (459)
                      +++|.+++.++
T Consensus       391 ~~~l~~~l~~~  401 (403)
T PRK05093        391 LARFEKAVAKV  401 (403)
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.93  E-value=1.9e-23  Score=209.51  Aligned_cols=327  Identities=15%  Similarity=0.100  Sum_probs=210.3

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCC------CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEee
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN------KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~------~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (459)
                      .+.++|+...|+   +... +|.+.+++.+.++....      ..|.+.....+|++.+|+++. .      ++.+++  
T Consensus        46 ~~~~~~~s~dyl---gl~~-~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g-~------~~~~~~--  112 (407)
T PRK09064         46 REVTVWCSNDYL---GMGQ-HPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHG-K------EAALVF--  112 (407)
T ss_pred             ceEEEEECCCCc---CCCC-CHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhC-C------CcEEEE--
Confidence            468899988774   5544 78899999887754210      123345567889999999863 2      455555  


Q ss_pred             cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCC-CCcEEEEe
Q 012647          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP-GGSFILLH  235 (459)
Q Consensus       157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~-~~~~~ii~  235 (459)
                       ++|++++..+..++....+++.|+.....+......++..|+++..++.       .|++.+++.++... ++++++++
T Consensus       113 -~sG~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~~  184 (407)
T PRK09064        113 -TSGYVSNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFRH-------NDVAHLEELLAAADPDRPKLIAF  184 (407)
T ss_pred             -CcHHHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHcCCcEEEECC-------CCHHHHHHHHHhccCCCCeEEEE
Confidence             5566776666444322347776666665665555566667777655543       37788888776432 36788999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEEcCCcCcccCCCCcc
Q 012647          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIG  314 (459)
Q Consensus       236 ~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG  314 (459)
                      ++++||+|.+   .++++|.++|++||+++|+||+|....+++. ..  .+....+. ...+++++||||.||++|   |
T Consensus       185 ~~v~s~~G~~---~~l~~i~~l~~~~~~~livDEa~~~G~~g~~-g~--g~~~~~~~~~~~div~~t~sKa~g~~G---G  255 (407)
T PRK09064        185 ESVYSMDGDI---APIAEICDLADKYNALTYLDEVHAVGMYGPR-GG--GIAERDGLMDRIDIIEGTLAKAFGVMG---G  255 (407)
T ss_pred             eCCCCCCccc---cCHHHHHHHHHHcCCEEEEECCCcccccCCC-CC--ChHHhcCCCCCCeEEEEecchhhhccC---c
Confidence            9999999999   4588899999999999999999862222211 11  11111111 234788999999999888   9


Q ss_pred             eEEEEeCChhHHHHHHHHHHhhcccc--ccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          315 AMNVVCSSSDLAARVKSQLKRLARPM--YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                      |+++   +++.++.+..    .....  ..+.+..++.++...|+   +.    +.....+++++++++++.+.|+ ++|
T Consensus       256 ~~~~---~~~~~~~l~~----~~~~~~~t~~~~~~~~~aa~~al~---~~----~~~~~~~~~~~~~~~~l~~~L~-~~g  320 (407)
T PRK09064        256 YIAG---SAALVDAVRS----YAPGFIFTTSLPPAIAAAALASIR---HL----KESNEERERHQERAAKLKAALD-AAG  320 (407)
T ss_pred             eEec---CHHHHHHHHH----hCccccccCcCCHHHHHHHHHHHH---HH----hcCHHHHHHHHHHHHHHHHHHH-HcC
Confidence            9755   7774444432    22211  11333344444433332   11    1123446788889999999999 887


Q ss_pred             CCCCcccccCCcceee-ecCC---CHHHHHHHHhcccEEEcCC-------C----cEEEccC-ChhhHHHHHHHHHHHHh
Q 012647          393 SGKDWSFILRQIGMFS-FTGL---NKAQSDNMTNKWHVYMTKD-------G----RISLAGL-SLAKCEYLADAIIDSYH  456 (459)
Q Consensus       393 ~~~~~~~~~~~~g~f~-~~~l---~~~~~~~ll~~~gI~v~~g-------g----Ris~~~~-~~e~i~~~~~~l~~~~~  456 (459)
                          ++++.+.++++. .++.   ..++.++|++++||.+.+.       |    ||+++.. +++++++++++|+++++
T Consensus       321 ----~~~~~~~~~iv~i~~~~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~  396 (407)
T PRK09064        321 ----IPVMPNESHIVPVMVGDPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWA  396 (407)
T ss_pred             ----CCCCCCCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence                466656555432 2232   1245667777679998642       2    8887643 88999999999999887


Q ss_pred             hc
Q 012647          457 NV  458 (459)
Q Consensus       457 ~~  458 (459)
                      ++
T Consensus       397 ~~  398 (407)
T PRK09064        397 RL  398 (407)
T ss_pred             Hc
Confidence            64

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.93  E-value=1.8e-23  Score=209.25  Aligned_cols=327  Identities=14%  Similarity=0.072  Sum_probs=210.0

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-C-----CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEee
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-N-----KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~-----~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (459)
                      ...++|+...|+   +... +|.+.+++.+.++... .     ..|.......+|++.+++++..       ++.+ +  
T Consensus        45 ~~~~~~~sn~yl---gl~~-~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~-------~~~l-~--  110 (402)
T TIGR01821        45 KDVTVWCSNDYL---GMGQ-HPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGK-------ESAL-V--  110 (402)
T ss_pred             eeEEEeEccCcC---CCCC-CHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCC-------CeEE-E--
Confidence            468899988774   4443 7889999988875421 0     0122344467899999998642       3334 4  


Q ss_pred             cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCC-CCcEEEEe
Q 012647          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP-GGSFILLH  235 (459)
Q Consensus       157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~-~~~~~ii~  235 (459)
                      +++|++++..+..++....+|+.|+.....|......++..|+++..++.       .|++++++.++... ++++++++
T Consensus       111 ~~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v~~  183 (402)
T TIGR01821       111 FTSGYVANDATLATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRH-------NDVAHLEKLLQSVDPNRPKIIAF  183 (402)
T ss_pred             ECchHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHHHcCCeEEEECC-------CCHHHHHHHHHhccCCCCeEEEE
Confidence            46678888877544422336777766655665555666677777655543       26777877776432 35788899


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEEcCCcCcccCCCCcc
Q 012647          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIG  314 (459)
Q Consensus       236 ~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG  314 (459)
                      ++|+||||.+.   ++++|.++|++||+++|+||+|....+++...   .+...... ...+++++||||.||++|   |
T Consensus       184 e~~~~~~G~~~---~l~~i~~l~~~~~~~livDea~~~G~~g~~g~---g~~~~~~~~~~~div~~t~sKa~g~~G---G  254 (402)
T TIGR01821       184 ESVYSMDGDIA---PIEEICDLADKYGALTYLDEVHAVGLYGPRGG---GIAERDGLMHRIDIIEGTLAKAFGVVG---G  254 (402)
T ss_pred             cCCCCCCCCcc---CHHHHHHHHHHcCCEEEEeCcccccccCCCCC---ccchhccCCCCCeEEEEechhhhccCC---c
Confidence            99999999995   47889999999999999999977322221111   11111111 123688899999999888   8


Q ss_pred             eEEEEeCChhHHHHHHHHHHhhccc--cccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          315 AMNVVCSSSDLAARVKSQLKRLARP--MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                      |+++   +++.++.+..    ....  .+.+.+..++.++...|+..      ++ .+..++++.++++++.+.|+ ++|
T Consensus       255 ~i~~---~~~~~~~l~~----~~~~~~~t~~~~~~~~aaa~aaL~~~------~~-~~~~~~~~~~~~~~l~~~L~-~~g  319 (402)
T TIGR01821       255 YIAA---SRKLIDAIRS----YAPGFIFTTSLPPAIAAGATASIRHL------KE-SQDLRRAHQENVKRLKNLLE-ALG  319 (402)
T ss_pred             eeec---CHHHHHHHHH----hCcCceecCcCCHHHHHHHHHHHHHh------hc-CHHHHHHHHHHHHHHHHHHH-HcC
Confidence            8754   7774444432    2211  12234444444444444321      11 13445666788899999999 887


Q ss_pred             CCCCcccccCCcceeee-cCC---CHHHHHHHHhcccEEEcCC-------C----cEEEccC-ChhhHHHHHHHHHHHHh
Q 012647          393 SGKDWSFILRQIGMFSF-TGL---NKAQSDNMTNKWHVYMTKD-------G----RISLAGL-SLAKCEYLADAIIDSYH  456 (459)
Q Consensus       393 ~~~~~~~~~~~~g~f~~-~~l---~~~~~~~ll~~~gI~v~~g-------g----Ris~~~~-~~e~i~~~~~~l~~~~~  456 (459)
                          +++..+.++++.+ ++.   ..++.++|++++||.+.+.       |    ||++... +++++++++++|+++++
T Consensus       320 ----~~~~~~~~~i~~i~~~~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~  395 (402)
T TIGR01821       320 ----IPVIPNPSHIVPVIIGDAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWD  395 (402)
T ss_pred             ----CCcCCCCCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence                4666666664322 232   1345667777679998652       2    8887543 89999999999999987


Q ss_pred             hc
Q 012647          457 NV  458 (459)
Q Consensus       457 ~~  458 (459)
                      ++
T Consensus       396 ~~  397 (402)
T TIGR01821       396 RL  397 (402)
T ss_pred             Hc
Confidence            64

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.93  E-value=2.7e-24  Score=215.12  Aligned_cols=324  Identities=15%  Similarity=0.106  Sum_probs=212.0

Q ss_pred             ccCCCCCCccCcHHHHHHHHHHhhcCCCCCC--------CCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhH
Q 012647           92 AYRTEELQPYVLDVVKKAENLMLERGENKEY--------LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (459)
Q Consensus        92 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y--------~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (459)
                      .|+|..+..++++.|.+++.+.+........        .....++++|+.+++++...      +++|++  |+|+|++
T Consensus         5 ~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~------~~~v~~--~~g~t~a   76 (402)
T TIGR02006         5 IYLDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGAD------SREIVF--TSGATES   76 (402)
T ss_pred             EEeeCCcCCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCC------CCeEEE--eCCHHHH
Confidence            4555556666789999999887742211111        11234677889999986533      678999  9999999


Q ss_pred             HHHHHHHHHH--hCCCCEEEEcCCCCcchHHHh---hhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCC
Q 012647          164 LRLAAALIER--YFPGAKVLISSPTWGNHKNIF---NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA  238 (459)
Q Consensus       164 ~~l~~~~~~~--~~~gd~Vlv~~p~y~~~~~~~---~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p  238 (459)
                      +++++..+..  ..+||+|+++.+.|..+...+   +..|++++.+|++  +++.+|++.+++.+++   ++++++++++
T Consensus        77 ~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~l~~---~~~lv~v~~~  151 (402)
T TIGR02006        77 NNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPK--SNGLIDLEELKAAIRD---DTILVSIMHV  151 (402)
T ss_pred             HHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccC--CCCcCCHHHHHHhcCC---CCEEEEEECC
Confidence            9998544432  258999999999998765443   4569999999984  4577999999999875   6788889999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012647          239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (459)
Q Consensus       239 ~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (459)
                      +||||.+   .++++|.++|+++|+++++|+++ .++..+.+         +.....++++.|++|.+|++|  +|++++
T Consensus       152 ~n~tG~~---~~~~~I~~l~~~~g~~livD~a~-a~g~~~~~---------~~~~~~D~~~~s~~K~~gp~G--~G~l~~  216 (402)
T TIGR02006       152 NNEIGVI---QDIAAIGEICRERKVFFHVDAAQ-SVGKIPIN---------VNELKVDLMSISGHKIYGPKG--IGALYV  216 (402)
T ss_pred             CcCceec---ccHHHHHHHHHHcCCEEEEEcch-hcCCcccC---------ccccCCCEEEEehhhhcCCCc--eEEEEE
Confidence            9999999   56788999999999999999994 44432111         122345688889999998778  799865


Q ss_pred             EeCChhHHHHHHHHHHh--hccccc-cCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 012647          319 VCSSSDLAARVKSQLKR--LARPMY-SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGK  395 (459)
Q Consensus       319 v~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  395 (459)
                         .++....+......  ..+... ..++.....++...|+   +.   ++.++...++++++++++.+.|+ +++   
T Consensus       217 ---~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~---~~---~~~~~~~~~~~~~l~~~l~~~l~-~~~---  283 (402)
T TIGR02006       217 ---RRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFR---IA---KEEMAQDTAHVLALRDRLLNGIK-SIE---  283 (402)
T ss_pred             ---ccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHH---HH---HHhHHHHHHHHHHHHHHHHHHHh-cCC---
Confidence               32211111110000  000111 1233333222333332   11   23356778899999999999998 653   


Q ss_pred             Cccccc------CCcceeeecCCCHHHHHHHHhcccEEEcCC-------------------------C--cEEEccC-Ch
Q 012647          396 DWSFIL------RQIGMFSFTGLNKAQSDNMTNKWHVYMTKD-------------------------G--RISLAGL-SL  441 (459)
Q Consensus       396 ~~~~~~------~~~g~f~~~~l~~~~~~~ll~~~gI~v~~g-------------------------g--Ris~~~~-~~  441 (459)
                      ++....      |....+.|.+.+.+.+...+  .+|.+..|                         |  |+|++.. |+
T Consensus       284 ~v~~~~~~~~~~p~~~~v~f~~~~~~~~~~~l--~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~  361 (402)
T TIGR02006       284 EVYLNGDLEHRVPGNLNVSFNYVEGESLIMAL--KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTE  361 (402)
T ss_pred             CEEEeCCccccCCCeEEEEEeCcCHHHHHHhc--CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCH
Confidence            133221      11123555555554433333  25654332                         2  9999876 88


Q ss_pred             hhHHHHHHHHHHHHhhc
Q 012647          442 AKCEYLADAIIDSYHNV  458 (459)
Q Consensus       442 e~i~~~~~~l~~~~~~~  458 (459)
                      +|+++++++|+++++.+
T Consensus       362 edid~l~~~l~~~~~~~  378 (402)
T TIGR02006       362 EEIDYAVKLVKSAIDKL  378 (402)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999988654

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.93  E-value=1.9e-23  Score=207.53  Aligned_cols=334  Identities=10%  Similarity=0.016  Sum_probs=213.5

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...+|+..|......|.  .+|.|.+++.+.++...  .. ......++++.+++++....+    .+.+++  +++|+
T Consensus        28 G~~~lD~~s~~~~~~lG~--~~p~v~~a~~~~~~~~~--~~-~~~~~~~~~~~la~~l~~~~~----~~~~~~--~~sG~   96 (377)
T PRK02936         28 GKTYLDFTSGIAVCNLGH--CHPTVTKAVQEQLDDIW--HV-SNLFTNSLQEEVASLLAENSA----GDLVFF--CNSGA   96 (377)
T ss_pred             CCEEEECCcchhhccCCC--CCHHHHHHHHHHHHhcc--cc-ccccCCHHHHHHHHHHHhcCC----CCEEEE--eCCcH
Confidence            357889988863222354  37889999999886521  12 223446888999999866532    256888  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHH-HhhhCCCCee---eeeeecCCCC--CCCHHHHHHHHHcCCCCcEEEEe
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKN-IFNDARVPWS---EYRYYDPKTV--GLDFEGMIADIKAAPGGSFILLH  235 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~-~~~~~G~~v~---~v~~~~~~~~--~~d~e~l~~~i~~~~~~~~~ii~  235 (459)
                      ++++.+.++......+++|++.+++|..... .+...|....   ..|..++..+  -.|++.+++.+.+   +++++++
T Consensus        97 ~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~ii~  173 (377)
T PRK02936         97 EANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNE---EVAAVML  173 (377)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhccC---CeEEEEE
Confidence            9999997654433344779999999874422 2222221110   1111100000  1178999988864   6778888


Q ss_pred             CCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcc
Q 012647          236 GCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIG  314 (459)
Q Consensus       236 ~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG  314 (459)
                      ..+++++|.. .+++.+++|.++|++||+++|+||+|.+++..+   ..+....+ ...+++   .+|||.++ +|+|+|
T Consensus       174 e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g---~~~~~~~~-~~~~di---~t~sK~l~-~G~~ig  245 (377)
T PRK02936        174 EVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTG---TLFAYEQF-GLDPDI---VTVAKGLG-NGIPVG  245 (377)
T ss_pred             ecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---hhhHHHhh-CCCCcE---EEEccccc-CCCccE
Confidence            8899999977 588999999999999999999999998887543   12222121 222333   37999999 899999


Q ss_pred             eEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--C
Q 012647          315 AMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD--K  392 (459)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--g  392 (459)
                      |+++   +++    +.+.+.......+.+.+.++|.++...|+....        +...++++++.+++.+.|+ +.  +
T Consensus       246 ~v~~---~~~----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--------~~~~~~~~~~~~~l~~~L~-~~~~~  309 (377)
T PRK02936        246 AMIG---KKE----LGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQ--------PSFLEEVQEKGEYFLQKLQ-EELEH  309 (377)
T ss_pred             EEEE---cHH----HHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHh--------ccHHHHHHHHHHHHHHHHH-HHHhh
Confidence            9866   777    444443322223335677777777766643210        2334555666666666666 42  1


Q ss_pred             CCCCcccccCCcceeeecCCC--HHHHHHHHhcccEEEcCCC----cEEEc-cCChhhHHHHHHHHHHHH
Q 012647          393 SGKDWSFILRQIGMFSFTGLN--KAQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       393 ~~~~~~~~~~~~g~f~~~~l~--~~~~~~ll~~~gI~v~~gg----Ris~~-~~~~e~i~~~~~~l~~~~  455 (459)
                      ++. +..+.+ .|+++|+.+.  .+.+...+.++||.+.|+|    ||++. ..+++++++++++|.+++
T Consensus       310 ~~~-~~~v~~-~g~~~~i~~~~~~~~~~~~l~~~gv~v~~~g~~~lRi~p~~~~~~~~i~~~i~~l~~~~  377 (377)
T PRK02936        310 LEC-VKNIRG-KGLMIGIECTEEVAPVIEQLREEGLLVLSAGPNVIRLLPPLVVTKEELDQAVYLLKKVL  377 (377)
T ss_pred             CCc-EEeEee-cceEEEEEecchHHHHHHHHHHCCeEEecCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence            111 222223 4678887663  3334444455799999876    88852 348999999999998764

>PRK07179 hypothetical protein; Provisional

Probab=99.93  E-value=2.5e-23  Score=208.61  Aligned_cols=322  Identities=15%  Similarity=0.079  Sum_probs=209.5

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC---C--CCCC-CCCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG---E--NKEY-LPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~---~--~~~Y-~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (459)
                      +...++|+...|++-..    .|.+.+++.+.+++.   .  ...| .......+|++.+|+++..        +.+++ 
T Consensus        53 g~~~~~~~~~~YL~l~~----~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~--------~~~~~-  119 (407)
T PRK07179         53 GPDAIILQSNDYLNLSG----HPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGF--------ESCLL-  119 (407)
T ss_pred             CCcEEEeecCCccCCCC----CHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCC--------CcEEE-
Confidence            45789999888865432    677888888777431   0  1112 1223467888999998632        34667 


Q ss_pred             ecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEe
Q 012647          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (459)
Q Consensus       156 ~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~  235 (459)
                       ++||++|+.++.  .....+||.|++..+.|......++..|++++.++.       .|++.+++.+++  ..++++++
T Consensus       120 -~~sG~~An~~~l--~~l~~~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~--~~~~lV~v  187 (407)
T PRK07179        120 -CQSGWAANVGLL--QTIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRH-------NDVDHLRRQIER--HGPGIIVV  187 (407)
T ss_pred             -ECCHHHHHHHHH--HHhCCCCCEEEEECCcCHHHHHHHHHCCCeEEEecC-------CCHHHHHHHHHh--cCCeEEEE
Confidence             899999999883  334568999999998888777777778887665532       489999999975  24678888


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC-eEEEEEcCCcCcccCCCCcc
Q 012647          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM-ELLVAQSYSKNLGLYAERIG  314 (459)
Q Consensus       236 ~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~S~SK~~~~~G~RiG  314 (459)
                      ++++||||.+.+   +++|.++|++||+++|+||+|.....+ ... ...+..+ +..+ .++++.|+||.+|   .|+|
T Consensus       188 ~~v~n~tG~i~p---l~~I~~l~~~~~~~livDea~~~g~~g-~~g-~g~~~~~-~~~~~vdi~~~S~sK~~g---~~~G  258 (407)
T PRK07179        188 DSVYSTTGTIAP---LADIVDIAEEFGCVLVVDESHSLGTHG-PQG-AGLVAEL-GLTSRVHFITASLAKAFA---GRAG  258 (407)
T ss_pred             CCCCCCCCcccc---HHHHHHHHHHcCCEEEEECcccccCcC-CCC-CchHHhc-CCCCCCCEEEeechHhhh---ccCe
Confidence            999999999965   678999999999999999998643222 111 1111111 1112 3588999999997   2689


Q ss_pred             eEEEEeCChhHHHHHHHHHHhhccc-cccCCchHHHHH-HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          315 AMNVVCSSSDLAARVKSQLKRLARP-MYSNPPVHGARI-VANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                      |+++   +++.++.+    ...... .++++....+.+ +...++.       .+..+..+++++++++++.+.|+ ++|
T Consensus       259 ~l~~---~~~~~~~~----~~~~~~~~~~~t~~~~~~aa~~aal~~-------~~~~~~~~~~l~~~~~~l~~~L~-~~g  323 (407)
T PRK07179        259 IITC---PRELAEYV----PFVSYPAIFSSTLLPHEIAGLEATLEV-------IESADDRRARLHANARFLREGLS-ELG  323 (407)
T ss_pred             EEEe---CHHHHHHH----HHhCcCeeeCCCCCHHHHHHHHHHHHH-------HhcCHHHHHHHHHHHHHHHHHHH-HcC
Confidence            9865   67743333    221111 122221222122 2222211       11124567889999999999999 886


Q ss_pred             CCCCcccccCCcceeeecCC----CHHHHHHHHhcccEEE----cCC-----C--cEEEccC-ChhhHHHHHHHHHHHHh
Q 012647          393 SGKDWSFILRQIGMFSFTGL----NKAQSDNMTNKWHVYM----TKD-----G--RISLAGL-SLAKCEYLADAIIDSYH  456 (459)
Q Consensus       393 ~~~~~~~~~~~~g~f~~~~l----~~~~~~~ll~~~gI~v----~~g-----g--Ris~~~~-~~e~i~~~~~~l~~~~~  456 (459)
                          +++. ..+. ++++.+    +.+.+...+.++||.+    .|+     +  ||+++.. +++++++++++|+++++
T Consensus       324 ----~~v~-~~~~-i~~l~~~~~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~  397 (407)
T PRK07179        324 ----YNIR-SESQ-IIALETGSERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCREARD  397 (407)
T ss_pred             ----CCCC-CCCC-EEEEEeCCHHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence                4544 3444 443322    2234444455569973    332     2  9998754 89999999999999987


Q ss_pred             hc
Q 012647          457 NV  458 (459)
Q Consensus       457 ~~  458 (459)
                      +.
T Consensus       398 ~~  399 (407)
T PRK07179        398 EV  399 (407)
T ss_pred             hh
Confidence            64

>PRK07049 methionine gamma-lyase; Validated

Probab=99.93  E-value=3.3e-23  Score=207.09  Aligned_cols=224  Identities=18%  Similarity=0.164  Sum_probs=163.4

Q ss_pred             CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh----h
Q 012647          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----N  195 (459)
Q Consensus       120 ~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~  195 (459)
                      .+| +......|++++|++..        .+++++  ++||++++.++  +.+.+.+||+|+++.|+|..+...+    +
T Consensus        78 ~R~-~~Pt~~~Le~~lA~leg--------~~~~iv--~~sG~~Ai~~~--l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~  144 (427)
T PRK07049         78 SRF-NHPNSEIVEDRLAVYEG--------AESAAL--FSSGMSAIATT--LLAFVRPGDVILHSQPLYGGTETLLAKTFR  144 (427)
T ss_pred             cCC-CCcCHHHHHHHHHHHhC--------CCcEEE--EccHHHHHHHH--HHHHhCCCCEEEEcCCCcccHHHHHHHHHH
Confidence            344 45556899999999963        245767  79999998887  5556789999999999999997664    4


Q ss_pred             hCCCCeeeeeeecCCCCCCCHHHHHHHHHcC--CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh---cCCeeEEecc
Q 012647          196 DARVPWSEYRYYDPKTVGLDFEGMIADIKAA--PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE---KNHIPFFDVA  270 (459)
Q Consensus       196 ~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~--~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~---~~~~ii~Dea  270 (459)
                      ..|++++.++.      ..|++.+++++.+.  .++++++++++||||||.+++.+++.+|++.|+.   +++++|+||+
T Consensus       145 ~~Gi~~v~~~~------~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDet  218 (427)
T PRK07049        145 NFGVGAVGFAD------GLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNT  218 (427)
T ss_pred             hcCcEEEEEeC------CCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECC
Confidence            67888777652      24778888777531  1368899999999999999999999999988654   6899999999


Q ss_pred             CCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc-cCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHH
Q 012647          271 YQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGA  349 (459)
Q Consensus       271 y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (459)
                      |.......      .+     ..+.++++.||||.++ ++|+|+||+++   +++..+.+..    .......+.+...|
T Consensus       219 y~~~~~~~------pl-----~~g~divv~S~SK~~gG~~glr~G~vv~---~~~l~~~l~~----~~~~~g~~ls~~~a  280 (427)
T PRK07049        219 LLGPVFQK------PL-----EHGADLSVYSLTKYVGGHSDLVAGAVLG---RKALIRQVRA----LRSAIGTQLDPHSC  280 (427)
T ss_pred             ccccccCC------cc-----ccCCCEEEEcCceeecCCCCcEEEEEEC---CHHHHHHHHH----HHHhcCCCCCHHHH
Confidence            87654211      11     1235688899999999 69999999854   7775555443    22233335666677


Q ss_pred             HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          350 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       350 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                      .++...|+.          +....++..++++.+.+.|+ +.
T Consensus       281 ~l~~r~L~t----------l~~R~~~~~~~a~~la~~L~-~~  311 (427)
T PRK07049        281 WMLGRSLET----------LVLRMERANRNARAVAEFLR-DH  311 (427)
T ss_pred             HHHHcCCCh----------HHHHHHHHHHHHHHHHHHHH-hC
Confidence            776655542          34445666888889999998 65

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.93  E-value=3.1e-23  Score=205.66  Aligned_cols=322  Identities=11%  Similarity=0.071  Sum_probs=205.8

Q ss_pred             CcHHHHHHHHHHhhcC--CCCCCCC-CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHh--CC
Q 012647          102 VLDVVKKAENLMLERG--ENKEYLP-IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY--FP  176 (459)
Q Consensus       102 ~~~~v~~a~~~~~~~~--~~~~Y~~-~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~--~~  176 (459)
                      ..|.+.+++.+.+...  ....|.. ..-..++++.++++++..      +.++++  ++||++++..+...+...  .+
T Consensus        32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~------~~~~~~--~~ggt~a~~~a~~~~~~~~~~~  103 (371)
T PRK13520         32 PHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLP------DAYGYI--TSGGTEANIQAVRAARNLAKAE  103 (371)
T ss_pred             chHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCC------CCCeEE--ecCcHHHHHHHHHHHHhhccCC
Confidence            3788889888877542  1111211 111246777777776422      456777  899999998875444322  25


Q ss_pred             CCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 012647          177 GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD  256 (459)
Q Consensus       177 gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~  256 (459)
                      ||+|++.+++|..+...++..|++++.+|.  ++++.+|++.+++++++   ++++++++.++||||.+   .++++|.+
T Consensus       104 ~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~~---~~~~vi~~~~~~~tG~~---~~l~~I~~  175 (371)
T PRK13520        104 KPNIVVPESAHFSFDKAADMLGVELRRAPL--DDDYRVDVKAVEDLIDD---NTIGIVGIAGTTELGQV---DPIPELSK  175 (371)
T ss_pred             CceEEecCcchHHHHHHHHHcCceEEEecC--CCCCcCCHHHHHHHHhh---CCEEEEEEcCCcCCccc---CCHHHHHH
Confidence            799999999999999888999999999998  34668999999999986   56666667789999999   55888999


Q ss_pred             HHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhh
Q 012647          257 VIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRL  336 (459)
Q Consensus       257 l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~  336 (459)
                      +|+++|+++++|++|..+..+ .......+.  ....+...+..|.+| |+++|.++|+++  ..+++..+.+.. ....
T Consensus       176 l~~~~g~~livD~a~~~~~~~-~~~~~~~~~--~~~~~vd~~~~s~~K-~~~a~~~~G~~~--~~~~~~~~~l~~-~~~~  248 (371)
T PRK13520        176 IALENGIFLHVDAAFGGFVIP-FLDDPPNFD--FSLPGVDSITIDPHK-MGLAPIPAGGIL--FRDESYLDALAV-DTPY  248 (371)
T ss_pred             HHHHcCCCEEEEecchhHHHH-hhcCCCCcc--ccCCCCceEEECCcc-ccCccCCceEEE--EcCHHHHHhhcc-cCcc
Confidence            999999999999998765421 000000000  011223455668888 555788999884  345553333211 0000


Q ss_pred             c----ccc-ccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcc-cccCCcceeeec
Q 012647          337 A----RPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWS-FILRQIGMFSFT  410 (459)
Q Consensus       337 ~----~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~~~~~~g~f~~~  410 (459)
                      .    +.. ....+.....++...|..-     ..+.+++.+++..++++++.+.|+ ++|    ++ +..+..+++.+.
T Consensus       249 ~~~~~~~~~~gt~~~~~~~~~~~al~~l-----~~~g~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~v~~~  318 (371)
T PRK13520        249 LTSKKQATLTGTRSGAGVAATYAVMKYL-----GREGYRKVVERCMENTRWLAEELK-ERG----FEPVIEPVLNIVAFD  318 (371)
T ss_pred             ccCCCCcceEeeccChHHHHHHHHHhhh-----cHhHHHHHHHHHHHHHHHHHHHHH-hCC----CEEecCCCceEEEEe
Confidence            0    000 0011122222222223210     012356778889999999999999 876    45 445555544332


Q ss_pred             CCCHH-HHHHHHhcccEEEcCCC-----cEEEccC-ChhhHHHHHHHHHHHHhh
Q 012647          411 GLNKA-QSDNMTNKWHVYMTKDG-----RISLAGL-SLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       411 ~l~~~-~~~~ll~~~gI~v~~gg-----Ris~~~~-~~e~i~~~~~~l~~~~~~  457 (459)
                      --+.+ +...|.+ +||.+..++     |||+... +++++++++++|++++++
T Consensus       319 ~~~~~~v~~~L~~-~gi~v~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~  371 (371)
T PRK13520        319 DPNPDEVREKLRE-RGWRVSVTRCPEALRIVCMPHVTREHIENFLEDLKEVKKR  371 (371)
T ss_pred             cCCHHHHHHHHHH-CCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhhC
Confidence            11334 4555555 599987753     9987644 889999999999988753

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.92  E-value=7.5e-23  Score=204.20  Aligned_cols=326  Identities=11%  Similarity=0.106  Sum_probs=209.4

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      +...+|+..|..-..-|.  -+|.|.+++.+.++... ...+.......+|.+.++++.    +    .+.+++  +++|
T Consensus        39 G~~~lD~~~g~~~~~lGh--~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~----~~~~~~--~~SG  106 (396)
T PRK04073         39 GNRYMDMLSAYSAVNQGH--RHPKIIQALKDQADKVTLTSRAFHSDQLGPWYEKVAKLT----G----KDMVLP--MNTG  106 (396)
T ss_pred             CCEEEEcCCCHHhccCCC--CCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhcC----C----CCeEEE--cCCh
Confidence            456888877754222233  37889999988876421 111222233345666666552    1    257888  9999


Q ss_pred             hhHHHHHHHHHHHh-------CCC-CEEEEcCCCCcchH-HHhhhCCCC------------eeeeeeecCCCCCCCHHHH
Q 012647          161 TGSLRLAAALIERY-------FPG-AKVLISSPTWGNHK-NIFNDARVP------------WSEYRYYDPKTVGLDFEGM  219 (459)
Q Consensus       161 t~a~~l~~~~~~~~-------~~g-d~Vlv~~p~y~~~~-~~~~~~G~~------------v~~v~~~~~~~~~~d~e~l  219 (459)
                      ++|++.+.++...+       .+| ++|+..+-+|.+.. ..+...+..            +..+|.       .|++.+
T Consensus       107 seA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l  179 (396)
T PRK04073        107 AEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPY-------GDLEAL  179 (396)
T ss_pred             HHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCC-------CCHHHH
Confidence            99999998776554       134 78888887776543 222222211            122222       278999


Q ss_pred             HHHHHcCCCCcEEEEeCCCCCCCCCCCCHH-HHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012647          220 IADIKAAPGGSFILLHGCAHNPTGIDPTPE-QWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (459)
Q Consensus       220 ~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~-~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (459)
                      ++.+++   +++++++++++||||.+++++ .+++|.++|++||+++|+||+|.+++..+   ..+.. ......++++ 
T Consensus       180 ~~~i~~---~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g---~~~~~-~~~~~~pdi~-  251 (396)
T PRK04073        180 KAAITP---NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTG---KLFAC-DWDNVTPDMY-  251 (396)
T ss_pred             HHhccc---CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCc---HHHHh-hhcCCCCCEE-
Confidence            888865   678888899999999998765 69999999999999999999999886532   11111 1112223333 


Q ss_pred             EEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012647          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  378 (459)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  378 (459)
                        +|||.+|.+|+|+||+++   +++.    .+.+.......+.+.+.+++.++...|+..      .+  +...++.++
T Consensus       252 --~~sK~lg~gg~~ig~~~~---~~~i----~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~------~~--~~l~~~~~~  314 (396)
T PRK04073        252 --ILGKALGGGVFPISCVAA---NRDI----LGVFTPGSHGSTFGGNPLACAVSIAALEVL------EE--EKLPERSLE  314 (396)
T ss_pred             --EecccccCCCCcceEEEE---cHHH----HhhhcCCCCCCCCCCCHHHHHHHHHHHHHH------Hh--cCHHHHHHH
Confidence              589999988899999976   7774    443332222233355667777766655311      00  134466677


Q ss_pred             HHHHHHHHHhhccCCCCCcccccCCcceeeecCC---CHHHHHHHHhcccEEEcCCC----cEEEc-cCChhhHHHHHHH
Q 012647          379 VRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADA  450 (459)
Q Consensus       379 ~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~gg----Ris~~-~~~~e~i~~~~~~  450 (459)
                      +++++.+.|+ +++.+ .+..+.+. |.|+++.+   +.++.++|++ +||.+.+.+    ||+.. ..++|++++++++
T Consensus       315 ~~~~l~~~L~-~l~~~-~i~~~~~~-g~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~iRi~p~l~~t~e~i~~~~~~  390 (396)
T PRK04073        315 LGEYFKEQLK-EIDNP-MIKEVRGR-GLFIGVELNEPARPYCEALKE-EGLLCKETHETVIRFAPPLVITKEELDWAFEK  390 (396)
T ss_pred             HHHHHHHHHH-hhcCC-cccceecc-eEEEEEEecchHHHHHHHHHH-CCeEEecCCCCEEEEECCcccCHHHHHHHHHH
Confidence            7899999998 76432 13334455 45555544   2355667666 599998754    88843 2299999999999


Q ss_pred             HHHHH
Q 012647          451 IIDSY  455 (459)
Q Consensus       451 l~~~~  455 (459)
                      |++++
T Consensus       391 l~~~l  395 (396)
T PRK04073        391 IKAVL  395 (396)
T ss_pred             HHHHh
Confidence            99875

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.92  E-value=6e-23  Score=206.37  Aligned_cols=344  Identities=8%  Similarity=0.005  Sum_probs=216.0

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...+|+..|..-...|.  -+|.+.+++.+.+++.. +.+.+..+.+.. ..+++++....+... .+++++  +.+|+
T Consensus        40 G~~~lD~~~g~~~~~lGh--~~~~i~~a~~~~~~~~~-~~~~~~~~~~~~-~~la~~l~~~~~~~~-~~~~~f--~~sGs  112 (425)
T PRK08088         40 GREYLDFAGGIAVLNTGH--LHPKVVAAVEAQLKKLS-HTCFQVLAYEPY-LELCEKMNQKVPGDF-AKKTLL--VTTGS  112 (425)
T ss_pred             CCEEEEcCCchhhcCCCC--CCHHHHHHHHHHHhhCC-CccccccCCHHH-HHHHHHHHHhCCCCC-CCEEEE--eCCcH
Confidence            356889988765222233  37889999998886532 222222223333 356666554333222 146777  88899


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCee----------------eeeeecCCCCCC--CHHHHHHHH
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWS----------------EYRYYDPKTVGL--DFEGMIADI  223 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~----------------~v~~~~~~~~~~--d~e~l~~~i  223 (459)
                      +|++.+.++...+....+|+..+++|.+....+...+....                .+|.+ ..+...  +++.+++.+
T Consensus       113 ea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~l~~~l  191 (425)
T PRK08088        113 EAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCP-LHGVSEDDAIASIERIF  191 (425)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCcc-ccCccHHHHHHHHHHHH
Confidence            99999988876666567788889999877655444332211                12221 111111  155678777


Q ss_pred             Hc--C-CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEE
Q 012647          224 KA--A-PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (459)
Q Consensus       224 ~~--~-~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  300 (459)
                      +.  . .+...+++-+..+|+++..++++.+++|.++|++||+++|+||+|.+++..+   ..+++..    ...+.-+.
T Consensus       192 ~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g---~~~~~~~----~~~~pdi~  264 (425)
T PRK08088        192 KNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTG---TLFAMEQ----MGVAADLT  264 (425)
T ss_pred             HhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---chhHHhh----cCCCCCEE
Confidence            52  1 2234455566678888888999999999999999999999999999876532   1222211    12233468


Q ss_pred             cCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012647          301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR  380 (459)
Q Consensus       301 S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~  380 (459)
                      ||||.++ +|+|+||+++   +++.++.+    .......+.+.+.+.|.++..+|+....    .+.+++.++..+.++
T Consensus       265 s~sK~l~-~G~rig~v~~---~~~~~~~~----~~~~~~~t~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~~  332 (425)
T PRK08088        265 TFAKSIA-GGFPLAGVTG---RAEVMDAI----APGGLGGTYAGNPIACAAALAVLKVFEQ----ENLLQKANALGEKLK  332 (425)
T ss_pred             EEecccc-CCCcceeeEe---cHHHHhhc----CCCCCCCCCCcCHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHH
Confidence            9999999 8999999976   87844443    3333344446677788888877764322    233455555555555


Q ss_pred             HHHHHHHhhccCCCCCcccccCCcceeeecCC-------------CHHHHHHHHhcccEEEcCCC------cEEEcc-CC
Q 012647          381 QKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-------------NKAQSDNMTNKWHVYMTKDG------RISLAG-LS  440 (459)
Q Consensus       381 ~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-------------~~~~~~~ll~~~gI~v~~gg------Ris~~~-~~  440 (459)
                      +.+.+.+. +.+.   +..+... |+++|+.+             ..++.+.+++ +||.+.+++      ||+++. .+
T Consensus       333 ~~l~~l~~-~~~~---~~~v~g~-G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~-~Gv~~~~~~~~~~~iRl~~~~~~t  406 (425)
T PRK08088        333 DGLLAIAE-KHPE---IGDVRGL-GAMIAIELFEDGDHSKPNAKLTAQIVARARD-KGLILLSCGPYYNVLRILVPLTIE  406 (425)
T ss_pred             HHHHHHHH-hCCC---eEEEecc-ceEEEEEEecCCCCCCCCHHHHHHHHHHHHh-CCCEEecCCCCCCEEEEECCCCcC
Confidence            55544444 4431   2222223 77888754             1233455555 599887754      999884 48


Q ss_pred             hhhHHHHHHHHHHHHhhc
Q 012647          441 LAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       441 ~e~i~~~~~~l~~~~~~~  458 (459)
                      +++|++++++|.+++.+.
T Consensus       407 ~~ei~~~i~~l~~~l~~~  424 (425)
T PRK08088        407 DAQIRQGLEIIAQCFDEA  424 (425)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999999998764

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.92  E-value=2.1e-23  Score=204.83  Aligned_cols=299  Identities=12%  Similarity=0.011  Sum_probs=208.0

Q ss_pred             cHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH-h-------
Q 012647          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-Y-------  174 (459)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~-~-------  174 (459)
                      +..+.+.+...++... ..|....+..++++++++++.+..|.+..+.++++  |+|||+++.++...+.. .       
T Consensus        12 ~~~~~~~~~~~~n~~~-~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~--t~ggt~a~~~al~~~~~~~~~~~~~~   88 (345)
T cd06450          12 PALLLEMLTSAKNAID-FTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVF--TSGGSESNLLALLAARDRARKRLKAG   88 (345)
T ss_pred             HHHHHHHHHHhcCCCC-cccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEE--eCChhHHHHHHHHHHHHHhhhhhhcc
Confidence            4556666666665433 55888889999999999998776665434567888  99999999998544422 1       


Q ss_pred             --CC--CCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCcEEEEeCCCCCCCCCCCC
Q 012647          175 --FP--GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGSFILLHGCAHNPTGIDPT  247 (459)
Q Consensus       175 --~~--gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~ii~~~p~NPTG~~~s  247 (459)
                        .+  ++.|+++.++|..+...++..|++++.+|++  +++.+|++.+++++++   ...+++++++++++||||.+  
T Consensus        89 ~~~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~--  164 (345)
T cd06450          89 GGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVD--EDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAI--  164 (345)
T ss_pred             cccccCCeEEEEcCcchhHHHHHHHHHhcCeEEeeeC--CCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCC--
Confidence              12  3488889999999988888889999999984  3458999999999975   22256778889999999998  


Q ss_pred             HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHH
Q 012647          248 PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAA  327 (459)
Q Consensus       248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~  327 (459)
                       +++++|+++|+++|+++++|++|..+....   +..... .....+-+.+..|++|.++ ++.|+|++++   +     
T Consensus       165 -~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~---~~~~~~-~~~~~~~d~~~~s~~K~l~-~p~g~g~~~~---~-----  230 (345)
T cd06450         165 -DPLEEIADLAEKYDLWLHVDAAYGGFLLPF---PEPRHL-DFGIERVDSISVDPHKYGL-VPLGCSAVLV---R-----  230 (345)
T ss_pred             -CCHHHHHHHHHHhCCeEEEechhhHHHhhC---hhhHHH-hcCccccCEEEEchhHhhC-CCcchHHHHH---H-----
Confidence             788999999999999999999987766421   110100 1111234567789999765 5677888732   1     


Q ss_pred             HHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc-cCCcce
Q 012647          328 RVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI-LRQIGM  406 (459)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~-~~~~g~  406 (459)
                                        .+++.++...+..        ..++++.++..++++++.+.|+ +++.   +.+. .++.++
T Consensus       231 ------------------~~~~~~~l~~l~~--------~g~~~~~~~~~~~~~~l~~~L~-~~~~---~~~~~~~~~~i  280 (345)
T cd06450         231 ------------------ALKLWATLRRFGR--------DGYGEHIDRIVDLAKYLAELIR-ADPG---FELLGEPNLSL  280 (345)
T ss_pred             ------------------HHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHh-cCCC---eEEecCCceeE
Confidence                              3333344433432        2356778888889999999998 7631   4443 356676


Q ss_pred             eeec--C-----CC-HHHHHHHHhcccEEEcCC------C--cEEEccC--ChhhHHHHHHHHHH
Q 012647          407 FSFT--G-----LN-KAQSDNMTNKWHVYMTKD------G--RISLAGL--SLAKCEYLADAIID  453 (459)
Q Consensus       407 f~~~--~-----l~-~~~~~~ll~~~gI~v~~g------g--Ris~~~~--~~e~i~~~~~~l~~  453 (459)
                      +.|.  +     .+ .++.++|.+ +|+.+.++      +  ||+++..  +++++++++++|++
T Consensus       281 v~f~~~~~~~~~~~~~~i~~~L~~-~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~  344 (345)
T cd06450         281 VCFRLKPSVKLDELNYDLSDRLNE-RGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER  344 (345)
T ss_pred             EEEEECCcchhhHHHHHHHHHHHh-cCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence            6654  2     12 244556655 45443332      2  9999853  78999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.92  E-value=3.9e-22  Score=199.77  Aligned_cols=327  Identities=16%  Similarity=0.106  Sum_probs=208.5

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-C-----CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEee
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-N-----KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~-----~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (459)
                      ...++|+...|+   +... +|+|.+++.+.++... .     ..+....-..+|++.+++++..       +..++   
T Consensus        45 ~~~~~~~sn~yl---gl~~-~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~-------~~~~~---  110 (406)
T PRK13393         45 REVTVWCSNDYL---GMGQ-HPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGK-------EAALL---  110 (406)
T ss_pred             ccEEEeeccccc---CCCC-CHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCC-------CcEEE---
Confidence            468899988774   3332 7889999988875421 0     0111222357788888888642       23344   


Q ss_pred             cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC-CCCcEEEEe
Q 012647          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA-PGGSFILLH  235 (459)
Q Consensus       157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~-~~~~~~ii~  235 (459)
                      .++|++++..+.+.+....+||.|+.....|......++..|++++.++.       .|++.+++.++.. +++++++++
T Consensus       111 ~~SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v~~  183 (406)
T PRK13393        111 FTSGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFRH-------NDPADLERKLSDLDPHRPKLVAF  183 (406)
T ss_pred             eCCcHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHHHcCCeEEEeCC-------CCHHHHHHHHHhccCCCCEEEEE
Confidence            45666788887554433337887777777777767777778887776664       2677777777642 235778889


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEEcCCcCcccCCCCcc
Q 012647          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIG  314 (459)
Q Consensus       236 ~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG  314 (459)
                      ++++||+|.+.   ++++|.++|+++|+++|+||+|....++... .  .+...... ...+++++||||.||++|   |
T Consensus       184 ~~v~~~~G~~~---~l~~i~~l~~~~~~~livDea~~~g~~g~~G-~--g~~~~~~~~~~~~i~~~tlsKa~g~~G---G  254 (406)
T PRK13393        184 ESVYSMDGDIA---PIAEICDVAEKHGAMTYLDEVHAVGLYGPRG-G--GIAEREGLADRLTIIEGTLAKAFGVMG---G  254 (406)
T ss_pred             cCCCCCCCchh---CHHHHHHHHHHcCCEEEEECCccccccCCCC-C--chhhhcCCCCCCeEEEEeCchhhcccC---c
Confidence            99999999994   5888999999999999999997622222211 1  11111111 123677899999999888   8


Q ss_pred             eEEEEeCChhHHHHHHHHHHhhcccc--ccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          315 AMNVVCSSSDLAARVKSQLKRLARPM--YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                      |+++   +++..+.+    ....+..  +.+.+..++.++...|+..      ++. ...+++++++++++.+.|+ ++|
T Consensus       255 ~~~~---~~~~~~~l----~~~~~~~~~t~~~~p~~~aa~~aaL~~~------~~~-~~~~~~~~~~~~~l~~~L~-~~g  319 (406)
T PRK13393        255 YITG---SAALCDFI----RSFASGFIFTTSLPPAVAAGALASVRHL------KAS-SAERERHQDRVARLRARLD-KAG  319 (406)
T ss_pred             eeeC---CHHHHHHH----HHhCcCceecCccCHHHHHHHHHHHHHH------hhC-HHHHHHHHHHHHHHHHHHH-HcC
Confidence            8754   77744443    3322221  2233444444444444311      111 1234567788999999998 776


Q ss_pred             CCCCcccccCCcceeee-cCC---CHHHHHHHHhcccEEEcC--------C-C--cEEEccC-ChhhHHHHHHHHHHHHh
Q 012647          393 SGKDWSFILRQIGMFSF-TGL---NKAQSDNMTNKWHVYMTK--------D-G--RISLAGL-SLAKCEYLADAIIDSYH  456 (459)
Q Consensus       393 ~~~~~~~~~~~~g~f~~-~~l---~~~~~~~ll~~~gI~v~~--------g-g--Ris~~~~-~~e~i~~~~~~l~~~~~  456 (459)
                          ++++.+.+.++.+ ++.   ..++.++|++++||.+.+        | +  ||++... +++++++++++|.++++
T Consensus       320 ----~~~~~~~~~i~~v~~~~~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~  395 (406)
T PRK13393        320 ----IPHLPNPSHIVPVMVGDPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWA  395 (406)
T ss_pred             ----CCcCCCCCCeEEEEeCCHHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence                4556666665432 232   134456777767999864        2 2  8887643 89999999999999887


Q ss_pred             hc
Q 012647          457 NV  458 (459)
Q Consensus       457 ~~  458 (459)
                      ++
T Consensus       396 ~~  397 (406)
T PRK13393        396 RL  397 (406)
T ss_pred             hc
Confidence            53

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.92  E-value=1.7e-22  Score=198.66  Aligned_cols=315  Identities=17%  Similarity=0.108  Sum_probs=199.8

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      ..+||.+ |.. +.-+.+++++++.+++.+..+.     |.   +.+++++++.+++...+|    .+++++  |+|+|.
T Consensus         8 ~~~ina~-g~~-t~~g~s~~~~~v~~a~~~~~~~-----~~---~~~~~~~~~~~~~a~~~g----~~~~~~--~~g~t~   71 (363)
T TIGR01437         8 KKVINAS-GKM-TILGVSTVSDEVADAQKRGAQN-----YF---EIKELVNKTGEYIANLLG----VEDAVI--VSSASA   71 (363)
T ss_pred             ceEEECC-cEe-ecCCCCCCCHHHHHHHHHHHhc-----CC---CHHHHHHHHHHHHHHhhC----CCeEEE--EcCHHH
Confidence            3566644 333 3335555699999999998743     32   234556665555544444    246778  999999


Q ss_pred             HHHHHHHHHHHhCCCC---------------EEEEcCCCCcch----HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHH
Q 012647          163 SLRLAAALIERYFPGA---------------KVLISSPTWGNH----KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI  223 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd---------------~Vlv~~p~y~~~----~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i  223 (459)
                      |++++  +.+.+.+||               +|+++.|.|..|    ...+...|+++++++.    ++.+|++++++++
T Consensus        72 al~~a--l~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~----~~~~d~~~le~ai  145 (363)
T TIGR01437        72 GIAQS--VAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGY----ANECSAEQLEAAI  145 (363)
T ss_pred             HHHHH--HHHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcC----CCCCCHHHHHHhc
Confidence            99998  455577887               999999888766    5677889999999876    3469999999999


Q ss_pred             HcCCCCcEEEE-eCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcC
Q 012647          224 KAAPGGSFILL-HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY  302 (459)
Q Consensus       224 ~~~~~~~~~ii-~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~  302 (459)
                      ++   ++++++ +++|+||+|.+.+   +++|+++|++||+++|+|++|.. .       .   ..... .+.+++++|+
T Consensus       146 ~~---~t~ai~~v~~~~~~~g~~~~---~~~i~~~a~~~gi~vivD~a~~~-~-------~---~~~~~-~g~D~~~~S~  207 (363)
T TIGR01437       146 TE---KTAAILYIKSHHCVQKSMLS---VEDAAQVAQEHNLPLIVDAAAEE-D-------L---QKYYR-LGADLVIYSG  207 (363)
T ss_pred             Ch---hceEEEEEecCCCCcCCcCC---HHHHHHHHHHcCCeEEEECCCCC-c-------h---HHHHH-cCCCEEEEeC
Confidence            86   566554 6889999999955   56799999999999999999751 1       1   11111 2346788999


Q ss_pred             CcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhcccccc-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 012647          303 SKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQ  381 (459)
Q Consensus       303 SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~  381 (459)
                      +|.+  +|++.|+++.   +++.++.+........+..-. ..+..+..++...+.+.         -.+..+.+.++++
T Consensus       208 ~K~l--~gp~~G~l~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~---------~~~~~~~~~~~~~  273 (363)
T TIGR01437       208 AKAI--EGPTSGLVLG---KKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLST---------GKESGAEMVAKLT  273 (363)
T ss_pred             Cccc--CCCceEEEEE---cHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHcc---------CcccHHHHHHHHH
Confidence            9976  5888999855   666444432111110000000 11122333332222211         1122334445667


Q ss_pred             HHHHHHhhccCCCCCcccccC--Ccce------eeec----CCCHHHHHHHHhccc--EEEcC----CC--cEEEccCCh
Q 012647          382 KLFDSLSAKDKSGKDWSFILR--QIGM------FSFT----GLNKAQSDNMTNKWH--VYMTK----DG--RISLAGLSL  441 (459)
Q Consensus       382 ~l~~~L~~~~g~~~~~~~~~~--~~g~------f~~~----~l~~~~~~~ll~~~g--I~v~~----gg--Ris~~~~~~  441 (459)
                      .+.+.|. +++   ++.+..+  ..+.      ..|.    +++.+.+...|++++  |.+++    .|  |+++...++
T Consensus       274 ~l~~~L~-~i~---g~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~~~~~  349 (363)
T TIGR01437       274 PFIEALN-TLK---GVSASIVQDEAGRDIARAEIRFDESELGMTAADVVQALRQGEPAIYTRGYKANEGIIEIDPRSVTG  349 (363)
T ss_pred             HHHHHHh-cCC---CeEEEEecCCCCCcCceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEeeeeecCCeEEEEeecCCH
Confidence            7888888 762   1444421  1111      1121    456655555555456  77774    34  777777799


Q ss_pred             hhHHHHHHHHHHHH
Q 012647          442 AKCEYLADAIIDSY  455 (459)
Q Consensus       442 e~i~~~~~~l~~~~  455 (459)
                      +|++.++++|++.+
T Consensus       350 ~e~~~~~~~l~~~~  363 (363)
T TIGR01437       350 GQLDIIVERIREIV  363 (363)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999998764

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PRK14012 cysteine desulfurase; Provisional

Probab=99.92  E-value=3.9e-23  Score=206.97  Aligned_cols=324  Identities=16%  Similarity=0.128  Sum_probs=203.7

Q ss_pred             ccCCCCCCccCcHHHHHHHHHHhh--cCCCCC--------CCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           92 AYRTEELQPYVLDVVKKAENLMLE--RGENKE--------YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        92 ~~~~~~~~~~~~~~v~~a~~~~~~--~~~~~~--------Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      .|+|..+..++++.+.+++.+.+.  ......        |.......++|+.+++++...      +++|++  ++|+|
T Consensus         5 iyld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~------~~~v~~--~~g~t   76 (404)
T PRK14012          5 IYLDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGAD------PREIVF--TSGAT   76 (404)
T ss_pred             EEecCcCCCCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcC------cCeEEE--eCCHH
Confidence            566776776778999999988774  211010        111234667889999987543      678988  99999


Q ss_pred             hHHHHHHHHHHH--hCCCCEEEEcCCCCcchHHHh---hhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeC
Q 012647          162 GSLRLAAALIER--YFPGAKVLISSPTWGNHKNIF---NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG  236 (459)
Q Consensus       162 ~a~~l~~~~~~~--~~~gd~Vlv~~p~y~~~~~~~---~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~  236 (459)
                      ++++++...+..  +.+||+|+++.++|+.+...+   +..|++++.++.+  .++.+|++.+++++++   ++++++++
T Consensus        77 ~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~--~~g~~d~~~l~~~i~~---~t~lv~~~  151 (404)
T PRK14012         77 ESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQ--SNGIIDLEKLEAAMRD---DTILVSIM  151 (404)
T ss_pred             HHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccC--CCCcCCHHHHHHhcCC---CCEEEEEE
Confidence            999998544422  358999999999997765444   3469999999884  4677899999999976   78899999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceE
Q 012647          237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (459)
Q Consensus       237 ~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~  316 (459)
                      +++||||.+   .++++|.++|+++|+++|+|+++ .++....+         ......++++.|++|.+|++|  +|++
T Consensus       152 ~~~n~tG~~---~~~~~I~~la~~~g~~vivD~a~-~~g~~~~~---------~~~~~~D~~~~s~~K~~gp~g--~G~l  216 (404)
T PRK14012        152 HVNNEIGVI---QDIAAIGEICRERGIIFHVDAAQ-SVGKVPID---------LSKLKVDLMSFSAHKIYGPKG--IGAL  216 (404)
T ss_pred             CcCCCccch---hhHHHHHHHHHHcCCEEEEEcch-hcCCcccC---------cccCCCCEEEEehhhccCCCc--eEEE
Confidence            999999999   56789999999999999999995 44422111         112234677789999888544  8998


Q ss_pred             EEEeCChhHHHHHHHHHHhh--ccccccC-CchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012647          317 NVVCSSSDLAARVKSQLKRL--ARPMYSN-PPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  393 (459)
Q Consensus       317 ~~v~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  393 (459)
                      ++   +++...++.......  .+....+ ++..........+.   +.   +..++...++.+++++++.+.|+ ++. 
T Consensus       217 ~~---~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~---~~---~~~~~~~~~~~~~l~~~l~~~L~-~~~-  285 (404)
T PRK14012        217 YV---RRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAAR---IA---KEEMATENERIRALRDRLWNGIK-DIE-  285 (404)
T ss_pred             EE---ecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHH---HH---HhhHHHHHHHHHHHHHHHHHHHh-cCC-
Confidence            65   322111111100000  0001111 22221111112221   11   12245567788888888888888 653 


Q ss_pred             CCCccccc--C---CcceeeecC-CCHHHHHHHHhcccEEEcCC-------------------------C--cEEEccC-
Q 012647          394 GKDWSFIL--R---QIGMFSFTG-LNKAQSDNMTNKWHVYMTKD-------------------------G--RISLAGL-  439 (459)
Q Consensus       394 ~~~~~~~~--~---~~g~f~~~~-l~~~~~~~ll~~~gI~v~~g-------------------------g--Ris~~~~-  439 (459)
                        ++....  +   ...+++|.. .+.+.+...++  ++.+..|                         +  |||+... 
T Consensus       286 --~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~  361 (404)
T PRK14012        286 --EVYLNGDLEQRVPGNLNVSFNYVEGESLIMALK--DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFT  361 (404)
T ss_pred             --CEEEeCCccccCCCEEEEEEeCcCHHHHHHhCC--CeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCC
Confidence              122221  1   112233333 33333333333  3433221                         2  9998865 


Q ss_pred             ChhhHHHHHHHHHHHHhhc
Q 012647          440 SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       440 ~~e~i~~~~~~l~~~~~~~  458 (459)
                      +++|+++++++|+++++.+
T Consensus       362 t~~dvd~~~~~l~~~~~~~  380 (404)
T PRK14012        362 TEEEIDYAIELVRKSIGKL  380 (404)
T ss_pred             CHHHHHHHHHHHHHHHHHH
Confidence            8899999999999988754

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.92  E-value=7.1e-23  Score=203.43  Aligned_cols=321  Identities=18%  Similarity=0.155  Sum_probs=205.4

Q ss_pred             cCCCCCCc-cCcHHHHHHHHHHhhcCC-C---CCCCC----CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhH
Q 012647           93 YRTEELQP-YVLDVVKKAENLMLERGE-N---KEYLP----IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (459)
Q Consensus        93 ~~~~~~~~-~~~~~v~~a~~~~~~~~~-~---~~Y~~----~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (459)
                      |+|..+.+ +.|+.+.+++.+.+.... .   ..|..    ..+..++|+.+++++....     +++|++  |.|++++
T Consensus         2 yld~a~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----~~~v~~--~~g~t~a   74 (376)
T TIGR01977         2 YFDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPS-----SAHVVF--TNNATTA   74 (376)
T ss_pred             CccCcccCCCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCC-----CCeEEE--eCCHHHH
Confidence            34444433 247889999888775421 1   12322    2567899999999975431     357988  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHH----HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCC
Q 012647          164 LRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (459)
Q Consensus       164 ~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~  239 (459)
                      ++++  +.+.+.+||+|+++.++|..+..    ..+..|++++.++.+  .++.+|++.+++++++   +++++++++||
T Consensus        75 l~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~~---~~~~v~~~~~~  147 (376)
T TIGR01977        75 LNIA--LKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCD--NEGLISPERIKRAIKT---NTKLIVVSHAS  147 (376)
T ss_pred             HHHH--HHhccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecC--CCCCcCHHHHHHhcCC---CCeEEEEECCC
Confidence            9987  44456799999999999877543    445569999999884  4567899999999965   67888899999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc-cCCCCcceEEE
Q 012647          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNV  318 (459)
Q Consensus       240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~~~  318 (459)
                      ||||.+++   +++|.++|+++|+++|+|+++ .++....+         ......++++.|++|.++ ++|  +|++++
T Consensus       148 n~tG~~~~---~~~i~~l~~~~~~~livD~a~-~~g~~~~~---------~~~~~~D~~~~s~~K~l~~p~g--~g~l~~  212 (376)
T TIGR01977       148 NVTGTILP---IEEIGELAQENGIFFILDAAQ-TAGVIPID---------MTELAIDMLAFTGHKGLLGPQG--TGGLYI  212 (376)
T ss_pred             CCccccCC---HHHHHHHHHHcCCEEEEEhhh-ccCccCCC---------chhcCCCEEEecccccccCCCC--ceEEEE
Confidence            99999965   567889999999999999994 44432111         122345688899999875 345  677754


Q ss_pred             EeCChhHHHHHHHH---HHh--------h-ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          319 VCSSSDLAARVKSQ---LKR--------L-ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDS  386 (459)
Q Consensus       319 v~~~~~~~~~~~~~---~~~--------~-~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  386 (459)
                        .++..+..+...   ...        . .+...++++.....+....|+   +..  +..++.++++.+++.+++.+.
T Consensus       213 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~---~~~--~~g~~~~~~~~~~l~~~~~~~  285 (376)
T TIGR01977       213 --REGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIK---FIE--KIGIANIAKKECMLTEKLLNG  285 (376)
T ss_pred             --cCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHH---HHH--HhCHHHHHHHHHHHHHHHHHH
Confidence              232211111100   000        0 001111233332222222221   110  123567788889999999999


Q ss_pred             HhhccCCCCCcccccC-----Ccceeee--cCCCHHHH-HHHHhcccEEEcCC----------------C--cEEEccC-
Q 012647          387 LSAKDKSGKDWSFILR-----QIGMFSF--TGLNKAQS-DNMTNKWHVYMTKD----------------G--RISLAGL-  439 (459)
Q Consensus       387 L~~~~g~~~~~~~~~~-----~~g~f~~--~~l~~~~~-~~ll~~~gI~v~~g----------------g--Ris~~~~-  439 (459)
                      |. +.+.   +++..+     ..+...+  .+.+.+.+ ..|.+++||.+..|                +  ||++... 
T Consensus       286 l~-~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~  361 (376)
T TIGR01977       286 LR-EINK---VKIYGPADPANRVGVVSFTVEGIDSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFN  361 (376)
T ss_pred             Hh-cCCC---eEEeCCCCccccCCeEEEEECCCCHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCC
Confidence            98 6531   444332     2233222  24555554 45555559988653                2  9998765 


Q ss_pred             ChhhHHHHHHHHHH
Q 012647          440 SLAKCEYLADAIID  453 (459)
Q Consensus       440 ~~e~i~~~~~~l~~  453 (459)
                      +++++++++++|++
T Consensus       362 t~~dv~~~~~~l~~  375 (376)
T TIGR01977       362 TEEEIEKLLEALSE  375 (376)
T ss_pred             CHHHHHHHHHHHhh
Confidence            88999999999975

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.91  E-value=2.6e-22  Score=199.14  Aligned_cols=318  Identities=10%  Similarity=0.044  Sum_probs=198.2

Q ss_pred             cHHHHHHHHHHhhcC--CCCCCCC-CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHh----C
Q 012647          103 LDVVKKAENLMLERG--ENKEYLP-IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY----F  175 (459)
Q Consensus       103 ~~~v~~a~~~~~~~~--~~~~Y~~-~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~----~  175 (459)
                      .+.+.+++...+...  ....|.. ..-..++++.++++++..      ++++++  +.|+++++.++...+..+    .
T Consensus        33 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~------~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~  104 (373)
T TIGR03812        33 HPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLP------DAYGYI--VSGGTEANIQAVRAAKNLAREEK  104 (373)
T ss_pred             hHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCC------CCCeEE--eccHHHHHHHHHHHHHHHHhccC
Confidence            556677776665321  1112311 112256778888886442      466777  899999988764333221    3


Q ss_pred             CCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 012647          176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIA  255 (459)
Q Consensus       176 ~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~  255 (459)
                      +||+|++++++|..|...++..|++++.+|++  .++.+|++++++.+++   ++..++..+|+||||.+   .++++|.
T Consensus       105 ~g~~vl~~~~~h~~~~~~~~~~G~~~~~v~~~--~~~~~d~~~l~~~l~~---~~~~vv~~~~~~~tG~~---~~~~~i~  176 (373)
T TIGR03812       105 RTPNIIVPESAHFSFEKAAEMLGLELRYAPLD--EDYTVDVKDVEDLIDD---NTIGIVGIAGTTELGQI---DDIEELS  176 (373)
T ss_pred             CCcEEEECCcchHHHHHHHHHcCCeEEEEeeC--CCCCcCHHHHHHHHhh---CcEEEEEECCCCCCCcc---CCHHHHH
Confidence            67999999999999999999999999999984  4678999999999976   44433434489999999   6788899


Q ss_pred             HHHHhcCCeeEEeccCCCCCCC--CCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHH
Q 012647          256 DVIQEKNHIPFFDVAYQGFASG--SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQL  333 (459)
Q Consensus       256 ~l~~~~~~~ii~Deay~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~  333 (459)
                      ++|+++|+++++|++|..+...  ........+.  +....-..+..|.+| |++++.|.|+++  ..+++.++.+... 
T Consensus       177 ~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d--~~~~~~d~~~~s~~K-~~~~~~~~G~~~--~~~~~~~~~l~~~-  250 (373)
T TIGR03812       177 KIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFD--FSLPGVQSITIDPHK-MGLSPIPAGGIL--FRSKSYLKYLSVD-  250 (373)
T ss_pred             HHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCcc--ccCCCCCEEEECccc-cCCCcCCceEEE--EeCHHHHhhhccc-
Confidence            9999999999999998654310  0000000000  011122345568889 666788899774  3466644433110 


Q ss_pred             Hhhccc----cc-cCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceee
Q 012647          334 KRLARP----MY-SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFS  408 (459)
Q Consensus       334 ~~~~~~----~~-~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~  408 (459)
                      ......    .+ ...+.....++...|+.-  .   ++.+++..+++.++++++.+.|+ ++|.   ..+..+..++..
T Consensus       251 ~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l--~---~~g~~~~~~~~~~~~~~l~~~L~-~~g~---~~~~~~~~~~v~  321 (373)
T TIGR03812       251 APYLTVKKQATITGTRSGASAAATYAVIKYL--G---REGYRKIVAECMENTRYLVEELK-KIGF---EPVIEPVLNIVA  321 (373)
T ss_pred             CcccCCCCCcceEeechhHHHHHHHHHHHHh--C---HHHHHHHHHHHHHHHHHHHHHHH-hCCC---eEEcCCCceEEE
Confidence            010000    00 012222222223333210  0   23467788999999999999999 8863   123344444333


Q ss_pred             ecCC-C-HHHHHHHHhcccEEEcCCC-----cEEEccC-ChhhHHHHHHHHHH
Q 012647          409 FTGL-N-KAQSDNMTNKWHVYMTKDG-----RISLAGL-SLAKCEYLADAIID  453 (459)
Q Consensus       409 ~~~l-~-~~~~~~ll~~~gI~v~~gg-----Ris~~~~-~~e~i~~~~~~l~~  453 (459)
                       +.+ + .++.++|.+ +||.+..+.     ||++... +++++++++++|++
T Consensus       322 -~~~~~~~~v~~~L~~-~gi~v~~~~~~~~iRis~~~~~t~edid~l~~~L~~  372 (373)
T TIGR03812       322 -FEVDDPEEVRKKLRD-RGWYVSVTRCPKALRIVVMPHVTREHIEEFLEDLKE  372 (373)
T ss_pred             -EEeCCHHHHHHHHHH-CCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence             332 2 344556655 599997752     9998754 88999999999975

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.91  E-value=5.5e-22  Score=196.66  Aligned_cols=328  Identities=12%  Similarity=0.083  Sum_probs=214.9

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccC-ceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~gg  160 (459)
                      +...+|+..|..  ...... .|++.+++.+.++..  ..+ +..-..++++.+++.+...      ++ .+++  +++|
T Consensus        28 g~~~lD~~s~~~--~~~lG~-~p~v~~a~~~~~~~~--~~~-~~~~~~~~~~~la~~l~~~------~~~~~~~--~~SG   93 (375)
T PRK04260         28 GKKYLDFSSGIG--VTNLGF-HPQVQQALQKQAGLI--WHS-PNLYLNSLQEEVAQKLIGD------KDYLAFF--CNSG   93 (375)
T ss_pred             CCEEEECCCCcc--cccCCC-CHHHHHHHHHHHHhc--Ccc-cCccCCHHHHHHHHHHhcC------cCCEEEE--cCcc
Confidence            346889887742  112333 677999999888642  122 2223457888999876442      23 3567  8999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchH-HHhhhCCCC---------eeeeeeecCCCCCCCHHHHHHHHHcCCCCc
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHK-NIFNDARVP---------WSEYRYYDPKTVGLDFEGMIADIKAAPGGS  230 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~-~~~~~~G~~---------v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~  230 (459)
                      ++++..+.++.....++++|++.+.+|.+.. ..+...|.+         +..++..    ...|++.+++.+.+   +.
T Consensus        94 seA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~dl~~l~~~l~~---~~  166 (375)
T PRK04260         94 AEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYA----IFNDLNSVKALVNK---NT  166 (375)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEe----CCCCHHHHHHhcCC---Ce
Confidence            9999999777665667788999999887532 222222211         1112211    12488999988754   66


Q ss_pred             EEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccC
Q 012647          231 FILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (459)
Q Consensus       231 ~~ii~~~p~NPTG~~~-s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  309 (459)
                      .++++.+++|++|.+. +.+.+++|.++|+++|+++|+||+|.+++..+   ..+... .....+++   .||||.++ +
T Consensus       167 a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g---~~~~~~-~~~~~pdi---~t~sK~l~-~  238 (375)
T PRK04260        167 AAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTG---KLYAFE-HYGIEPDI---FTLAKGLA-N  238 (375)
T ss_pred             EEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---chhhhH-hhCCCCCE---EEeccccc-C
Confidence            7888899999999875 46779999999999999999999998876432   122211 12223443   38999999 8


Q ss_pred             CCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012647          310 AERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA  389 (459)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  389 (459)
                      |+|+||+++   +++.    .+.+.......+.+.+.+++.++...|+....    .+.+++.++..+..++.+.+.+. 
T Consensus       239 G~~ig~~~~---~~~~----~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~-  306 (375)
T PRK04260        239 GVPVGAMLA---KSSL----GGAFGYGSHGSTFGGNKLSMAAASATLDIMLT----AGFLEQALENGNYLQEQLQKALQ-  306 (375)
T ss_pred             CcceEEEEE---cHHH----HhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHh-
Confidence            999999976   7774    33333222222335566677777666643221    13356667777777777777776 


Q ss_pred             ccCCCCCcccccCCcceeeecCC--CH-HHHHHHHhcccEEEcCCC----cEEE-ccCChhhHHHHHHHHHHHH
Q 012647          390 KDKSGKDWSFILRQIGMFSFTGL--NK-AQSDNMTNKWHVYMTKDG----RISL-AGLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       390 ~~g~~~~~~~~~~~~g~f~~~~l--~~-~~~~~ll~~~gI~v~~gg----Ris~-~~~~~e~i~~~~~~l~~~~  455 (459)
                      +.+.   +..+. ..|+++|+.+  +. ++.+++.+ +||.+.+.+    ||++ ...+++++++++++|++++
T Consensus       307 ~~~~---~~~~~-~~g~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~~~lR~~~~~~~t~~~i~~~l~~l~~~~  375 (375)
T PRK04260        307 DKET---VTTVR-GLGYMIGIETTADLSQLVEAARD-KGLIVLTAGTNVIRLLPPLTLTKEEIEQGIAILSEVF  375 (375)
T ss_pred             hCCC---eeEEe-ccceEEEEEecCcHHHHHHHHHh-CCCEEecCCCCEEEEcCCCccCHHHHHHHHHHHHHhC
Confidence            5531   22222 3688888864  33 44555555 699998875    8887 4558999999999998753

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.91  E-value=1.8e-22  Score=204.92  Aligned_cols=318  Identities=14%  Similarity=0.086  Sum_probs=200.5

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCC-----CcccHHHHHHHHHHH---hcCCCCccccCceEEe
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP-----IEGLAAFNKVTAELL---FGADNSVLKEQRVATV  155 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~-----~~g~~~lr~aia~~l---~~~~~~~~~~~~i~~~  155 (459)
                      .+++++.|.|    .+. ++..+.++.....  . ...|.|     ..|   .+++++++.   ....|.+  ++++.+ 
T Consensus        69 ~~~~lg~g~~----~~~-~p~~~~~~~~~~~--~-~~~y~~~~~~~~~g---~~~~~~e~~~~la~l~g~~--~~~v~~-  134 (447)
T PRK00451         69 YPSFLGAGAY----DHY-IPAVVDHIISRSE--F-YTAYTPYQPEISQG---TLQAIFEYQTMICELTGMD--VANASM-  134 (447)
T ss_pred             CcccCccccc----CCc-CcHHHHHHHhchh--H-HHhcCCCCCccchH---HHHHHHHHHHHHHHHhCCC--cceEEe-
Confidence            5778898887    333 2555554443221  1 123544     333   444444222   3333332  567888 


Q ss_pred             ecccchhHHHHHHHHHHH-hCCCCEEEEcCCCCcchHHHhhh----CCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCc
Q 012647          156 QGLSGTGSLRLAAALIER-YFPGAKVLISSPTWGNHKNIFND----ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGS  230 (459)
Q Consensus       156 ~t~ggt~a~~l~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~----~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~  230 (459)
                       |+|||++++.+  +.+. +.+||+|++++|.|+.+...++.    .|++++.+|++  ++ .+|++++++++++   ++
T Consensus       135 -~~g~t~~~~~~--~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~--~~-~~d~~~l~~~i~~---~t  205 (447)
T PRK00451        135 -YDGATALAEAA--LMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYE--DG-VTDLEALEAAVDD---DT  205 (447)
T ss_pred             -cCcHHHHHHHH--HHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCC--CC-CCCHHHHHHhcCC---Ce
Confidence             99999988877  3333 36899999999999988877664    69999999984  34 8999999999975   78


Q ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEE--eccCCCCCCCCCCCChhHHHHHHhcCCeEEEEE---cCCcC
Q 012647          231 FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFF--DVAYQGFASGSLDNDASSVRLFATRGMELLVAQ---SYSKN  305 (459)
Q Consensus       231 ~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~--Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---S~SK~  305 (459)
                      +++++++| ||||.+   +++++|+++|+++|+++++  |.+..++...            ....+.++++.   +|||.
T Consensus       206 ~~v~l~~p-n~tG~v---~~l~~I~~~a~~~~~~~iv~~d~~~~g~~~~------------~~~~~~D~~~~s~~k~~~~  269 (447)
T PRK00451        206 AAVVVQYP-NFFGVI---EDLEEIAEIAHAGGALFIVGVDPVSLGLLKP------------PGEYGADIVVGEGQPLGIP  269 (447)
T ss_pred             EEEEEECC-CCCCee---CCHHHHHHHHHHCCCEEEEEcChHHhccCCC------------cccCCCCEEEECCCcCCCC
Confidence            88888899 899999   7799999999999999998  5442211100            01223345554   78888


Q ss_pred             cccCCCCcceEEEEeCChhHHHHHHH------------------------HHHhhccccccCCchHHH-HHHHHHhCChh
Q 012647          306 LGLYAERIGAMNVVCSSSDLAARVKS------------------------QLKRLARPMYSNPPVHGA-RIVANVVGNPA  360 (459)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~-~~~~~~L~~~~  360 (459)
                      +.+.|+|+||+++   +++..+.+..                        ..+........+.+...+ .++...+..  
T Consensus       270 ~~~~Gpg~G~l~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~--  344 (447)
T PRK00451        270 LSFGGPYLGFFAT---RKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSL--  344 (447)
T ss_pred             CCCCCCCchHHHh---hHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHH--
Confidence            8889999999966   6664443200                        001111111112222222 222211110  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeee--cC--CC-HHHHHHHHhcccEEE-cCC---
Q 012647          361 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF--TG--LN-KAQSDNMTNKWHVYM-TKD---  431 (459)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~--~~--l~-~~~~~~ll~~~gI~v-~~g---  431 (459)
                      +.   .+.++++.+++.++++++.+.|+ +++.   +++.  ++++|.+  +.  .+ .++.++|+++ ||.. .++   
T Consensus       345 ~~---~~g~~~~~~~~~~~~~~l~~~L~-~~~g---~~~~--~~~~~~~~~v~~~~~~~~~~~~L~~~-gi~~~~~~~~~  414 (447)
T PRK00451        345 LG---PEGLRELAEQNHQKAHYLAERLA-EIGG---VELF--DGPFFNEFVVRLPKPAEEVNEALLEK-GILGGYDLGRY  414 (447)
T ss_pred             HC---HHHHHHHHHHHHHHHHHHHHHHh-hcCC---EEec--CCCeEEEEEEecCCCHHHHHHHHHhc-CCCCCcccccc
Confidence            00   23468889999999999999999 8741   4544  4455533  33  23 4557777765 6642 111   


Q ss_pred             -----C--cEEEccC-ChhhHHHHHHHHHHHH
Q 012647          432 -----G--RISLAGL-SLAKCEYLADAIIDSY  455 (459)
Q Consensus       432 -----g--Ris~~~~-~~e~i~~~~~~l~~~~  455 (459)
                           +  |+|++.. +++++++++++|++++
T Consensus       415 ~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~  446 (447)
T PRK00451        415 YPELGNHLLVCVTEKRTKEDIDALVAALGEVL  446 (447)
T ss_pred             cCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence                 2  8888643 8899999999998764

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.91  E-value=2.3e-22  Score=201.03  Aligned_cols=336  Identities=14%  Similarity=0.048  Sum_probs=211.3

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC--CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...+|+..|..-+.-+..  +|.|.+++.+.+....  ...| ......++.+.++++.    +    .+.+++  +++
T Consensus        38 G~~~lD~~~g~~~~~lGh~--~p~v~~A~~~~~~~~~~~~~~~-~~~~~~~la~~l~~~~----~----~~~v~~--~~s  104 (406)
T PRK12381         38 GKEYIDFAGGIAVNALGHA--HPALREALNEQASKFWHTGNGY-TNEPVLRLAKKLIDAT----F----ADRVFF--CNS  104 (406)
T ss_pred             CCEEEEcCcCHhhccCCCC--CHHHHHHHHHHHhhcccccCcc-CCHHHHHHHHHHHhhC----C----CCeEEE--cCC
Confidence            3568899887543344554  7889999988875421  1122 1222345666666552    1    368888  999


Q ss_pred             chhHHHHHHHHHHHhC------CCCEEEEcCCCCcchHHHhhhCCCCee----eeeeec--CCCCCCCHHHHHHHHHcCC
Q 012647          160 GTGSLRLAAALIERYF------PGAKVLISSPTWGNHKNIFNDARVPWS----EYRYYD--PKTVGLDFEGMIADIKAAP  227 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~------~gd~Vlv~~p~y~~~~~~~~~~G~~v~----~v~~~~--~~~~~~d~e~l~~~i~~~~  227 (459)
                      |++|++.+.++.....      ++.+|+..+.+|.+........+....    ..|+.+  ......|++.+++.+++  
T Consensus       105 GseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--  182 (406)
T PRK12381        105 GAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDD--  182 (406)
T ss_pred             cHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhccC--
Confidence            9999999988876552      457899999999876543322222110    001100  00112478999988864  


Q ss_pred             CCcEEEEeCCCCCCCCCCC--CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC
Q 012647          228 GGSFILLHGCAHNPTGIDP--TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (459)
Q Consensus       228 ~~~~~ii~~~p~NPTG~~~--s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (459)
                       +++++++ .|.||+|-++  +++.+++|.++|++||+++|+||+|.+++..+   ..+.... ....+++   .||||.
T Consensus       183 -~~aavii-EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G---~~~~~~~-~~v~pDi---~t~sK~  253 (406)
T PRK12381        183 -QTCAVIV-EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTG---ELYAYMH-YGVTPDV---LTTAKA  253 (406)
T ss_pred             -CeeEEEE-eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCc---chhhhHh-hCCCCCE---EEehhh
Confidence             5666665 6899998754  78999999999999999999999998886543   1222111 1222333   499999


Q ss_pred             cccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          306 LGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD  385 (459)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  385 (459)
                      ++ +|+|+||+++   +++    +.+.+.......+.+.+.+++.++...|+-   .   .  -+..+++++++.+++.+
T Consensus       254 l~-gG~~ig~~~~---~~~----~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~---l---~--~~~~~~~~~~~~~~l~~  317 (406)
T PRK12381        254 LG-GGFPIGAMLT---TEK----CASVMTVGTHGTTYGGNPLASAVAGKVLEL---I---N--TPEMLNGVKQRHDWFVE  317 (406)
T ss_pred             hh-CCCceEEEEE---cHH----HHhhcCCCCCCCCCCCCHHHHHHHHHHHHH---H---h--hccHHHHHHHHHHHHHH
Confidence            99 8999999976   777    444443322233335556666666554421   1   0  13567888888888888


Q ss_pred             HHhhccCCCCCcccccCCcceeeecCCC------HHHHHHHHhcccEEEcCCC----cEEEcc-CChhhHHHHHHHHHHH
Q 012647          386 SLSAKDKSGKDWSFILRQIGMFSFTGLN------KAQSDNMTNKWHVYMTKDG----RISLAG-LSLAKCEYLADAIIDS  454 (459)
Q Consensus       386 ~L~~~~g~~~~~~~~~~~~g~f~~~~l~------~~~~~~ll~~~gI~v~~gg----Ris~~~-~~~e~i~~~~~~l~~~  454 (459)
                      .|+ +++....+.......|+++++.+.      ...+...+.++||.+.+.|    ||+++. .+++++++++++|.++
T Consensus       318 ~L~-~l~~~~~~~~~vrg~Gl~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~p~~~~t~~~i~~~~~~l~~~  396 (406)
T PRK12381        318 RLN-TINARYGLFSEIRGLGLLIGCVLNAEYAGKAKQISQEAAKAGVMVLIAGPNVVRFAPALNISEEEITTGLDRFARA  396 (406)
T ss_pred             HHH-HHHhhCCCEEEEecCeEEEEEEecCchhhHHHHHHHHHHHCCcEEeeCCCCEEEEeCCccCCHHHHHHHHHHHHHH
Confidence            888 653111111112233566555432      1233344444699998755    887764 4999999999999999


Q ss_pred             Hhhc
Q 012647          455 YHNV  458 (459)
Q Consensus       455 ~~~~  458 (459)
                      ++++
T Consensus       397 l~~~  400 (406)
T PRK12381        397 CERF  400 (406)
T ss_pred             HHHH
Confidence            8765

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.91  E-value=3.2e-23  Score=197.43  Aligned_cols=201  Identities=14%  Similarity=0.058  Sum_probs=161.1

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhc----CC-C-CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEee
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER----GE-N-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~----~~-~-~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (459)
                      .+.+.|..+      .+++.++.|.+++...+..    .+ . +.|.+..+.++.|+.+|++++++      +++|+|  
T Consensus        42 ~~~vyld~~------at~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd------~~dIiF--  107 (428)
T KOG1549|consen   42 TRPVYLDNQ------ATGPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINAD------PSDIVF--  107 (428)
T ss_pred             CccEEEecC------cCCCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCC------CCcEEE--
Confidence            355555544      4566799999999988743    11 1 34445667899999999999887      677999  


Q ss_pred             cccchhHHHHHHHHHHHhCCCC----EEEEcCCCCcchHHHh---hhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCC
Q 012647          157 GLSGTGSLRLAAALIERYFPGA----KVLISSPTWGNHKNIF---NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (459)
Q Consensus       157 t~ggt~a~~l~~~~~~~~~~gd----~Vlv~~p~y~~~~~~~---~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~  229 (459)
                      |+|+|++++++.+-+. +..+|    +|++..-.|......+   +..|++++++|+.  +++.+|.+.+++.|++   +
T Consensus       108 ts~ATEs~Nlvl~~v~-~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~--~~~~~d~~~~~~~i~~---~  181 (428)
T KOG1549|consen  108 TSGATESNNLVLKGVA-RFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVE--DSGLVDISKLREAIRS---K  181 (428)
T ss_pred             eCCchHHHHHHHHHhh-ccccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccC--ccccccHHHHHHhcCC---C
Confidence            9999999999955543 23556    8888887777665544   4579999999994  5678999999999997   8


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccC
Q 012647          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (459)
Q Consensus       230 ~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  309 (459)
                      |+++.+...+|.+|++   .+++||+++|+++++++++|.| |..+.-         +-.+.+.+-+++..|.+|.||++
T Consensus       182 T~lv~I~~Vnn~~gv~---~Pv~EI~~icr~~~v~v~~DaA-QavG~i---------~vDV~eln~D~~s~s~HK~ygp~  248 (428)
T KOG1549|consen  182 TRLVSIMHVNNEIGVL---QPVKEIVKICREEGVQVHVDAA-QAVGKI---------PVDVQELNADFLSISAHKIYGPP  248 (428)
T ss_pred             ceEEEEEecccCcccc---ccHHHHHHHhCcCCcEEEeehh-hhcCCc---------cccHHHcCchheeeecccccCCC
Confidence            9999999999999999   8888999999999999999999 777632         22345667788999999999999


Q ss_pred             CCCcceEEE
Q 012647          310 AERIGAMNV  318 (459)
Q Consensus       310 G~RiG~~~~  318 (459)
                      |  +|++++
T Consensus       249 ~--iGaLYv  255 (428)
T KOG1549|consen  249 G--IGALYV  255 (428)
T ss_pred             c--ceEEEE
Confidence            9  999987

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.91  E-value=1.5e-21  Score=194.10  Aligned_cols=216  Identities=16%  Similarity=0.088  Sum_probs=152.5

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----hhhCCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARV  199 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~G~  199 (459)
                      +..+..+|++++|++...        +++++  ++||++++.++  +...+.+||+|+++.|.|..+...    ++..|+
T Consensus        62 ~~p~~~~Le~~iA~~~g~--------~~~l~--~~sG~~Ai~~a--l~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~  129 (400)
T PRK06234         62 GNPTSTEVENKLALLEGG--------EAAVV--AASGMGAISSS--LWSALKAGDHVVASDTLYGCTFALLNHGLTRYGV  129 (400)
T ss_pred             CCccHHHHHHHHHHHhCC--------CcEEE--EcCHHHHHHHH--HHHHhCCCCEEEEecCccchHHHHHHHHHhhCCe
Confidence            788899999999999753        24556  79999999887  455678999999999988765443    467899


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc--CCeeEEeccCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK--NHIPFFDVAYQGFASG  277 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~--~~~ii~Deay~~~~~~  277 (459)
                      +++.++.       .|++++++++++   +++++++++|+||||.+.   ++++|+++|+++  |+++|+|++|......
T Consensus       130 ~v~~vd~-------~d~e~l~~~i~~---~tklI~iesP~NPtG~v~---dl~~I~~la~~~~~~i~livDea~~~~~~~  196 (400)
T PRK06234        130 EVTFVDT-------SNLEEVRNALKA---NTKVVYLETPANPTLKVT---DIKAISNIAHENNKECLVFVDNTFCTPYIQ  196 (400)
T ss_pred             EEEEECC-------CCHHHHHHHhcc---CCeEEEEECCCCCCCCcC---CHHHHHHHHHhcCCCCEEEEECCCCchhcC
Confidence            9888875       278999999976   788999999999999995   477888999986  9999999998766432


Q ss_pred             CCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc-ceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHh
Q 012647          278 SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVV  356 (459)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  356 (459)
                      .      .+     ..+.++++.|+||.++.+|+|+ ||+++   +++.++++.......  ......+...+..+..-|
T Consensus       197 ~------~l-----~~g~Divv~S~sK~l~g~g~~~gG~v~~---~~~~~~~l~~~~~~~--~~g~~l~p~~a~l~~~~l  260 (400)
T PRK06234        197 R------PL-----QLGADVVVHSATKYLNGHGDVIAGFVVG---KEEFINQVKLFGIKD--MTGSVIGPFEAFLIIRGM  260 (400)
T ss_pred             C------ch-----hhCCcEEEeeccccccCCCCceeEEEEe---cHHHHHHHHHHHHHH--hcCCCCCHHHHHHHHhcc
Confidence            1      11     1135689999999999899887 88755   677555554321111  111233333333333333


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          357 GNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                      +.          +....++..++...+.+.|+ +.
T Consensus       261 ~t----------l~~r~~~~~~na~~~a~~L~-~~  284 (400)
T PRK06234        261 KT----------LQIRMEKHCKNAMKVAKFLE-SH  284 (400)
T ss_pred             Cc----------HHHHHHHHHHHHHHHHHHHH-cC
Confidence            32          23444445566666777776 54

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.91  E-value=7.1e-22  Score=198.75  Aligned_cols=324  Identities=16%  Similarity=0.181  Sum_probs=197.1

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC------CCcccHHH----HHHHHHHHhcCCCCccccCce
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL------PIEGLAAF----NKVTAELLFGADNSVLKEQRV  152 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~------~~~g~~~l----r~aia~~l~~~~~~~~~~~~i  152 (459)
                      .+.++|..++.      + +++.|++++...+.......++      ...-...+    |+.++++++..      ..+|
T Consensus        25 ~~~~~l~~~~n------~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~------~~~i   91 (416)
T PRK00011         25 EEHIELIASEN------F-VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAE------YANV   91 (416)
T ss_pred             hcCeeeecccC------c-CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCC------ceee
Confidence            57799998764      3 4889999987664221100110      11112223    33556665432      3445


Q ss_pred             EEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH-----HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCC
Q 012647          153 ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN-----IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP  227 (459)
Q Consensus       153 ~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~-----~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~  227 (459)
                      ++  + +|+.++..+  +...+.+||+|+++.|+|..+..     .+...|++++.++++ .+++.+|++++++.+++  
T Consensus        92 ~~--~-sgt~al~~~--l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~i~~--  163 (416)
T PRK00011         92 QP--H-SGSQANAAV--YFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVD-EETGLIDYDEVEKLALE--  163 (416)
T ss_pred             ec--C-CchHHHHHH--HHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCcC-cccCCcCHHHHHHHHHh--
Confidence            54  4 568888887  34446799999999999976532     123456788888874 24578999999999975  


Q ss_pred             CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCC-CCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc
Q 012647          228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG-FASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (459)
Q Consensus       228 ~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  306 (459)
                      .+++++++++++||  ..   .++++|+++|+++|+++|+|++|.. +.+.+.   ..   ..+.  ..+++++|+||.+
T Consensus       164 ~~~k~v~~~~~~~~--~~---~~~~~I~~la~~~~~~livD~a~~~g~~~~g~---~~---~~~~--~~di~~~S~~K~l  230 (416)
T PRK00011        164 HKPKLIIAGASAYS--RP---IDFKRFREIADEVGAYLMVDMAHIAGLVAAGV---HP---SPVP--HADVVTTTTHKTL  230 (416)
T ss_pred             cCCCEEEECCCcCC--Cc---cCHHHHHHHHHHcCCEEEEECcchhcccccCc---cC---CCCC--CCcEEEecCCcCC
Confidence            24667776655554  44   5688999999999999999999642 221110   00   0011  2357799999976


Q ss_pred             ccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          307 GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDS  386 (459)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  386 (459)
                        +|+|.||+++  .+++..+.+......   ....++....+.++...+.  ...   .+.+++.+++++++++++.+.
T Consensus       231 --~g~~gg~i~~--~~~~~~~~l~~~~~~---~~~~~~~~~~~aa~~~a~~--~~~---~~~~~~~~~~~~~~~~~l~~~  298 (416)
T PRK00011        231 --RGPRGGLILT--NDEELAKKINSAVFP---GIQGGPLMHVIAAKAVAFK--EAL---EPEFKEYAQQVVKNAKALAEA  298 (416)
T ss_pred             --CCCCceEEEe--CCHHHHHHHHHHhCc---cccCCccHHHHHHHHHHHH--HHH---hhhHHHHHHHHHHHHHHHHHH
Confidence              6888999844  445644444332211   1121222212111111111  111   123577888999999999999


Q ss_pred             HhhccCCCCCccccc-CCcceeeecCC-----CHHHHHHHHhcccEEEcCC-------------C-cEEE-----ccCCh
Q 012647          387 LSAKDKSGKDWSFIL-RQIGMFSFTGL-----NKAQSDNMTNKWHVYMTKD-------------G-RISL-----AGLSL  441 (459)
Q Consensus       387 L~~~~g~~~~~~~~~-~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~g-------------g-Ris~-----~~~~~  441 (459)
                      |+ ++|    +++.. ...++++|+.+     +.+.+...++++||.+..+             + |++.     .++++
T Consensus       299 L~-~~g----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~  373 (416)
T PRK00011        299 LA-ERG----FRVVSGGTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKE  373 (416)
T ss_pred             HH-hCC----CeeeecCCCCeEEEEeCcccCCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCH
Confidence            99 876    44432 11236666644     3444555556679998731             2 7743     13478


Q ss_pred             hhHHHHHHHHHHHHhh
Q 012647          442 AKCEYLADAIIDSYHN  457 (459)
Q Consensus       442 e~i~~~~~~l~~~~~~  457 (459)
                      +++++++++|+++++.
T Consensus       374 ~di~~l~~~l~~~~~~  389 (416)
T PRK00011        374 AEMKEIAELIADVLDN  389 (416)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999988764

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.91  E-value=1.1e-21  Score=193.32  Aligned_cols=274  Identities=14%  Similarity=0.156  Sum_probs=187.1

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcch----HHHhhhCCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH----KNIFNDARV  199 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~----~~~~~~~G~  199 (459)
                      +.....+|++++|++....       . .++  ++||++++.++   +..+.+||+|++++|+|+..    ...++..|+
T Consensus        50 ~~pt~~~le~~la~l~g~~-------~-~~~--~~sG~~ai~~~---~~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~  116 (366)
T PRK08247         50 GNPTRGVLEQAIADLEGGD-------Q-GFA--CSSGMAAIQLV---MSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNV  116 (366)
T ss_pred             CCchHHHHHHHHHHHhCCC-------c-EEE--EcCHHHHHHHH---HHHhCCCCEEEEecCCcCcHHHHHHHHhhccCc
Confidence            4556789999999996543       2 344  68889999876   34567999999999999864    445566899


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~  279 (459)
                      +++.++.       .|++.+++++++   +++++++++|+||+|..   .++++|+++|+++|+++|+|++|....... 
T Consensus       117 ~v~~vd~-------~d~~~l~~~i~~---~tklv~le~P~NP~~~~---~dl~~I~~la~~~g~~lIvD~t~~~~~~~~-  182 (366)
T PRK08247        117 RFVYVNT-------ASLKAIEQAITP---NTKAIFIETPTNPLMQE---TDIAAIAKIAKKHGLLLIVDNTFYTPVLQR-  182 (366)
T ss_pred             eEEEECC-------CCHHHHHHhccc---CceEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCCccccccC-
Confidence            9888865       388999999876   78899999999998776   999999999999999999999984332210 


Q ss_pred             CCChhHHHHHHhcCCeEEEEEcCCcCcccC-CCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCC
Q 012647          280 DNDASSVRLFATRGMELLVAQSYSKNLGLY-AERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN  358 (459)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  358 (459)
                           ++     ....++++.|+||.++.+ +.+.|+++  ++++++.+++...    +.......+...|.++...|+.
T Consensus       183 -----p~-----~~g~di~i~S~sK~~~g~~d~~~G~iv--~~~~~l~~~~~~~----~~~~g~~~s~~~a~l~~~~l~t  246 (366)
T PRK08247        183 -----PL-----EEGADIVIHSATKYLGGHNDVLAGLVV--AKGQELCERLAYY----QNAAGAVLSPFDSWLLIRGMKT  246 (366)
T ss_pred             -----ch-----hcCCcEEEeecceeccCCCceeeeEEe--cChHHHHHHHHHH----HHhcCCCCChHHHHHHHhccCc
Confidence                 11     123579999999999743 46889874  3335544444322    2222223444555555544432


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcc-c-ccCCcceeeecCC-CHHHHHHHHhc------------
Q 012647          359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWS-F-ILRQIGMFSFTGL-NKAQSDNMTNK------------  423 (459)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~-~~~~~g~f~~~~l-~~~~~~~ll~~------------  423 (459)
                                +....++++++++.+.+.|+ +.+  + +. + .++.||+|.|. + +.+...++++.            
T Consensus       247 ----------l~~r~~~~~~~a~~l~~~L~-~~p--~-v~~v~~P~~gg~~sf~-~~~~~~~~~~~~~l~~~~~~~slg~  311 (366)
T PRK08247        247 ----------LALRMRQHEENAKAIAAFLN-EQP--G-VTDVLYPGRGGMLSFR-LQDEEWVNPFLKSLKLITFAESLGG  311 (366)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHH-hCC--C-eeEEecCCcCcEEEEE-ECCHHHHHHHHHcCCcceEccCCCC
Confidence                      34455567889999999999 763  1 33 3 34489999884 3 23333333331            


Q ss_pred             -ccEEEcCC---------------C------cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          424 -WHVYMTKD---------------G------RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       424 -~gI~v~~g---------------g------Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                       ..+.+.|+               |      |||++-   |+++.+++-|.++++.+
T Consensus       312 ~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svGl---E~~~dl~~dl~~al~~~  365 (366)
T PRK08247        312 VESFITYPATQTHADIPEEIRIANGVCNRLLRFSVGI---ENVEDLIADLKQAFKQV  365 (366)
T ss_pred             CceEEECCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHhhc
Confidence             23344443               2      889865   67888888888888754

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.90  E-value=1.4e-21  Score=193.95  Aligned_cols=329  Identities=12%  Similarity=0.080  Sum_probs=201.4

Q ss_pred             eeecccccCCCCCCccCcHHHHHHHHHHhhc-------CCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           86 LNLGVGAYRTEELQPYVLDVVKKAENLMLER-------GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        86 i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-------~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      +||+...|+   +... .|+++++..+.+++       .. ..|+...+..+|++++|+++..       ++.+++  ++
T Consensus         1 ~~f~s~dyL---gl~~-~~~~~~~~~~a~~~~g~~~~~sr-~~yg~~~~~~~LE~~lA~~~g~-------e~al~~--~s   66 (392)
T PLN03227          1 LNFATHDFL---STSS-SPTLRQTALESLSHYGCGSCGPR-GFYGTIDAHLELEQCMAEFLGT-------ESAILY--SD   66 (392)
T ss_pred             CCCcCcCcc---CCCC-CHHHHHHHHHHHHHhCCCCcccc-cccCChHHHHHHHHHHHHHhCC-------CcEEEe--cC
Confidence            356666554   3332 67888888887754       12 3377777899999999999754       355766  55


Q ss_pred             cchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC--------CCCc
Q 012647          159 SGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA--------PGGS  230 (459)
Q Consensus       159 ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~--------~~~~  230 (459)
                      |.+... .+  +...+.+||.|+++++.|..+...+...+++++.++..+    .-|++.+.+.+...        .+++
T Consensus        67 G~~a~~-~~--i~~l~~~GD~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~d----~~~l~~~~~~i~~~~~a~~~~~~~~t  139 (392)
T PLN03227         67 GASTTS-ST--VAAFAKRGDLLVVDRGVNEALLVGVSLSRANVRWFRHND----MKDLRRVLEQVRAQDVALKRKPTDQR  139 (392)
T ss_pred             cHHHHH-HH--HHHhCCCCCEEEEeccccHHHHHHHHHcCCeEEEeCCCC----HHHHHHHHHHhhhhccccccccCCCc
Confidence            555554 44  344578999999999999998887777788777776631    12445555555421        1367


Q ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH-H-hcCCeEEEEEcCCcCccc
Q 012647          231 FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF-A-TRGMELLVAQSYSKNLGL  308 (459)
Q Consensus       231 ~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~S~SK~~~~  308 (459)
                      +++++.+++||+|.+.+   +++|.++|++||+++|+||+|. ++..+.. .......+ + ...+.++++.|+||.+|+
T Consensus       140 ~~vi~E~v~~~~G~i~~---l~~i~~l~~~~g~~livDe~~~-~g~~g~~-G~g~~~~~g~~p~~~~Div~~slsk~~g~  214 (392)
T PLN03227        140 RFLVVEGLYKNTGTLAP---LKELVALKEEFHYRLILDESFS-FGTLGKS-GRGSLEHAGLKPMVHAEIVTFSLENAFGS  214 (392)
T ss_pred             EEEEEcCCcCCCCcccC---HHHHHHHHHHcCCEEEEECccc-ccccCCC-CCcHHHHcCCCCCCCceEEEeechhhhhc
Confidence            88889999999999965   7789999999999999999986 4432111 11122111 1 112347888999998764


Q ss_pred             CCCCcceEEEEeCChhHHHHHHHHHHhhcccccc-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          309 YAERIGAMNVVCSSSDLAARVKSQLKRLARPMYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSL  387 (459)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  387 (459)
                      .   .|++.+   +++.++.+..   ......++ +.+...+.++...+...       ...++..++++++.+++.+.|
T Consensus       215 ~---gg~v~~---~~~~~~~~~~---~~~~~~~~~~~~p~~~~aa~~al~~~-------~~~~~~~~~l~~~~~~l~~~L  278 (392)
T PLN03227        215 V---GGMTVG---SEEVVDHQRL---SGSGYCFSASAPPFLAKADATATAGE-------LAGPQLLNRLHDSIANLYSTL  278 (392)
T ss_pred             c---CcEEec---CHHHHHHHHH---hCcCccccCCCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHH
Confidence            3   477644   7774433321   11112222 22333334443222211       001356778888899999999


Q ss_pred             hhccCCCC------CcccccCCcceeeecCCC--------------HHHHHHHHhcccEEEcCC-------------C--
Q 012647          388 SAKDKSGK------DWSFILRQIGMFSFTGLN--------------KAQSDNMTNKWHVYMTKD-------------G--  432 (459)
Q Consensus       388 ~~~~g~~~------~~~~~~~~~g~f~~~~l~--------------~~~~~~ll~~~gI~v~~g-------------g--  432 (459)
                      + +.+.|.      .........+.++.+.+.              .++.+.+++ +||.+.+.             .  
T Consensus       279 ~-~~~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gi~~~~~~~~~~~~~~~~P~~~i  356 (392)
T PLN03227        279 T-NSSHPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLS-EGVAVVSTGGHVKKFLQLVPPPCL  356 (392)
T ss_pred             H-hcCCccccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHH-CCCEEEecccccCCcCCCCCCceE
Confidence            8 654321      000001111222222221              134556665 59987531             1  


Q ss_pred             cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          433 RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       433 Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                      |+++.. .|+||+++++++|+++++++
T Consensus       357 R~~~~~~~t~eei~~~~~~l~~~~~~~  383 (392)
T PLN03227        357 RVVANASHTREDIDKLLTVLGEAVEAI  383 (392)
T ss_pred             EEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            888764 39999999999999998763

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.90  E-value=1.3e-22  Score=199.76  Aligned_cols=291  Identities=15%  Similarity=0.092  Sum_probs=189.5

Q ss_pred             CCCCCCccCcHHHHHHHHHHhhcCCC--CCCCCC------cccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHH
Q 012647           94 RTEELQPYVLDVVKKAENLMLERGEN--KEYLPI------EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR  165 (459)
Q Consensus        94 ~~~~~~~~~~~~v~~a~~~~~~~~~~--~~Y~~~------~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~  165 (459)
                      +|..+..++++.+.+++.+.+.....  ..+...      .-++++|+.+++++...      +++|++  |+|+|++++
T Consensus         2 ld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~------~~~v~~--~~g~t~a~~   73 (353)
T TIGR03235         2 LDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGAD------TEEVIF--TSGATESNN   73 (353)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCC------CCeEEE--eCCHHHHHH
Confidence            45666666789999999888743110  111111      12568889999987543      678999  999999999


Q ss_pred             HHHHHHHHh--CCC-CEEEEcCCCCcchHH---HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCC
Q 012647          166 LAAALIERY--FPG-AKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (459)
Q Consensus       166 l~~~~~~~~--~~g-d~Vlv~~p~y~~~~~---~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~  239 (459)
                      ++...+...  .+| +.|++....|+.+..   .++..|++++.+|++  +++.+|++++++.+++   +++++++++++
T Consensus        74 ~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~l~~~l~~---~~~lv~~~~~~  148 (353)
T TIGR03235        74 LAILGLARAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVD--ESGRIDVDELADAIRP---DTLLVSIMHVN  148 (353)
T ss_pred             HHHHHHHHhcccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccC--CCCcCCHHHHHHhCCC---CCEEEEEEccc
Confidence            874433221  256 778888766665433   345679999999984  4577999999999875   67889899999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEE
Q 012647          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (459)
Q Consensus       240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (459)
                      ||||.++   ++++|+++|+++|+++++|++ +.++....+         ....+.++++.|++|.+|++|  +|++++ 
T Consensus       149 n~tG~~~---~~~~I~~l~~~~~~~~ivD~a-~~~g~~~~~---------~~~~~~D~~~~s~~K~~gp~g--~g~l~~-  212 (353)
T TIGR03235       149 NETGSIQ---PIREIAEVLEAHEAFFHVDAA-QVVGKITVD---------LSADRIDLISCSGHKIYGPKG--IGALVI-  212 (353)
T ss_pred             CCceecc---CHHHHHHHHHHcCCEEEEEch-hhcCCcccc---------ccccCCCEEEeehhhcCCCCc--eEEEEE-
Confidence            9999995   478899999999999999999 444432111         122345677889999998777  799865 


Q ss_pred             eCChhHHHHHHHHHHhh---------ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012647          320 CSSSDLAARVKSQLKRL---------ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK  390 (459)
Q Consensus       320 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  390 (459)
                        +++.....  .....         ....+.+++.+.+  ....++   +   +.+.+++.+++++++++++++.|+ +
T Consensus       213 --~~~~~~~~--~~~~~~~~~~~~~~~~~gt~~~~~~~a--l~~al~---~---~~~~~~~~~~~~~~l~~~l~~~l~-~  279 (353)
T TIGR03235       213 --RKRGKPKA--PLKPIMFGGGQERGLRPGTLPVHLIVG--MGEAAE---I---ARRNAQAWEVKLRAMRNQLRDALQ-T  279 (353)
T ss_pred             --ccCccccc--ccCceeeCCCCcCccccCCCChHHHHH--HHHHHH---H---HHhhHHHHHHHHHHHHHHHHHHhc-c
Confidence              43321110  01100         0111122223222  222221   1   123467888999999999999998 7


Q ss_pred             cCCCCCcccccCC----ccee--eecCCCHHHHHHHHhcccEEEcCC
Q 012647          391 DKSGKDWSFILRQ----IGMF--SFTGLNKAQSDNMTNKWHVYMTKD  431 (459)
Q Consensus       391 ~g~~~~~~~~~~~----~g~f--~~~~l~~~~~~~ll~~~gI~v~~g  431 (459)
                      .|    +++..+.    .++.  ...+.+.+.+...|++ +|.+.+|
T Consensus       280 ~g----~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~L~~-~i~v~~g  321 (353)
T TIGR03235       280 LG----VKLNGDPAETIPHILNFSIDGVNSEALIVNLRA-DAAVSTG  321 (353)
T ss_pred             CC----eEEeCCcccccCCEEEEEeCCcCHHHHHHHHhC-CeEEEch
Confidence            76    4544221    1222  2245666676666665 8999887

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PLN02651 cysteine desulfurase

Probab=99.90  E-value=2.5e-22  Score=198.43  Aligned_cols=296  Identities=15%  Similarity=0.073  Sum_probs=189.1

Q ss_pred             cCCCCCCccCcHHHHHHHHHHhhcCCCCC------CCC--CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHH
Q 012647           93 YRTEELQPYVLDVVKKAENLMLERGENKE------YLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSL  164 (459)
Q Consensus        93 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~------Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~  164 (459)
                      |+|..+..++++.+.+++.+.+.......      +..  ..-++++|+.+++++...      +++|++  |+|+|+++
T Consensus         2 Yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~------~~~v~~--t~~~t~a~   73 (364)
T PLN02651          2 YLDMQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGAD------PKEIIF--TSGATESN   73 (364)
T ss_pred             cccCcCCCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCC------CCeEEE--eCCHHHHH
Confidence            56666666778999999988774311111      111  122567788888887543      678999  99999999


Q ss_pred             HHHHHHHHH--hCCCCEEEEcCCCCcchHHH---hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCC
Q 012647          165 RLAAALIER--YFPGAKVLISSPTWGNHKNI---FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (459)
Q Consensus       165 ~l~~~~~~~--~~~gd~Vlv~~p~y~~~~~~---~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~  239 (459)
                      +++...+..  ..+||+|+++...|+.+...   ++..|++++.+|++  +++.+|++.+++++++   +++++++++++
T Consensus        74 ~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~---~t~lv~v~~~~  148 (364)
T PLN02651         74 NLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVK--SDGLVDLDELAAAIRP---DTALVSVMAVN  148 (364)
T ss_pred             HHHHHHHHHhccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccC--CCCcCCHHHHHHhcCC---CcEEEEEECCC
Confidence            887444322  35899999999777655433   34578999999883  4577999999999976   78899999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEE
Q 012647          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (459)
Q Consensus       240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (459)
                      ||||.+   .++++|+++|+++|+++++|.+ +.++.-+.+         +...+.++++.|.+|.+|++|  +|++++ 
T Consensus       149 n~tG~~---~~l~~I~~~~~~~g~~~~vD~a-~~~g~~~~~---------~~~~~~D~~~~s~hK~~gp~G--~g~l~v-  212 (364)
T PLN02651        149 NEIGVI---QPVEEIGELCREKKVLFHTDAA-QAVGKIPVD---------VDDLGVDLMSISGHKIYGPKG--VGALYV-  212 (364)
T ss_pred             CCceec---ccHHHHHHHHHHcCCEEEEEcc-hhhCCcccC---------cccCCCCEEEechhhhCCCCc--eEEEEE-
Confidence            999999   5678899999999999999999 444432221         223346788899999877666  799866 


Q ss_pred             eCChhHHHHHHHHHHh--h-ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 012647          320 CSSSDLAARVKSQLKR--L-ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKD  396 (459)
Q Consensus       320 ~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~  396 (459)
                        +++....+......  . ......+++..+...+...|+   +   +.+..++++++.+++++++.+.|+ +. +| +
T Consensus       213 --~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~---~---~~~~~~~i~~~~~~l~~~l~~~l~-~~-~~-~  281 (364)
T PLN02651        213 --RRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACE---L---AMKEMDYDEKHMKALRERLLNGLR-AK-LG-G  281 (364)
T ss_pred             --cCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHH---H---HHHhHHHHHHHHHHHHHHHHHHHH-hh-CC-C
Confidence              44322222111100  0 001122333333333333322   1   123356778888999999999887 53 11 1


Q ss_pred             cccccC---C---ccee--eecCCCHHHHHHHHhcccEEEcC
Q 012647          397 WSFILR---Q---IGMF--SFTGLNKAQSDNMTNKWHVYMTK  430 (459)
Q Consensus       397 ~~~~~~---~---~g~f--~~~~l~~~~~~~ll~~~gI~v~~  430 (459)
                      ++...+   +   .+..  ...+++.+.+...|++  |.+..
T Consensus       282 ~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~--i~v~~  321 (364)
T PLN02651        282 VRVNGPRDPEKRYPGTLNLSFAYVEGESLLMGLKE--VAVSS  321 (364)
T ss_pred             EEEECCCCcccCcCCEEEEEeCCCCHHHHHHHhCC--EEEEc
Confidence            444432   1   2333  3346666665544453  76643

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.90  E-value=1.1e-20  Score=189.10  Aligned_cols=328  Identities=11%  Similarity=0.071  Sum_probs=208.5

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      +...+|+..|..-...|.  -.|.|.+++.+.++... ...+.......+|.+.++++..        .+++++  +++|
T Consensus        40 g~~~lD~~~~~~~~~~Gh--~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--------~~~~~~--~~SG  107 (401)
T PRK00854         40 GNRYLDCLSAYSAVNQGH--CHPKILAAMVEQAGRLTLTSRAFRNDQLAPLYEELAALTG--------SHKVLP--MNSG  107 (401)
T ss_pred             CCEEEEcCcchhhccCCC--CCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhCC--------CCEEEE--eCCc
Confidence            346788877743112222  27889999888876421 1112233445667777777631        246888  8999


Q ss_pred             hhHHHHHHHHHHHh-----C--CC-CEEEEcCCCCcchHHHhhhCCC-------------CeeeeeeecCCCCCCCHHHH
Q 012647          161 TGSLRLAAALIERY-----F--PG-AKVLISSPTWGNHKNIFNDARV-------------PWSEYRYYDPKTVGLDFEGM  219 (459)
Q Consensus       161 t~a~~l~~~~~~~~-----~--~g-d~Vlv~~p~y~~~~~~~~~~G~-------------~v~~v~~~~~~~~~~d~e~l  219 (459)
                      ++|++.+.+++...     .  +| ++|++.+-+|.+....+...+.             .+..+|.       .|++.+
T Consensus       108 s~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l  180 (401)
T PRK00854        108 AEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPF-------GDAEAL  180 (401)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCC-------CCHHHH
Confidence            99999997776543     1  23 6888888887654322222221             1222222       378999


Q ss_pred             HHHHHcCCCCcEEEEeCCCCCCCCCCCCH-HHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012647          220 IADIKAAPGGSFILLHGCAHNPTGIDPTP-EQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (459)
Q Consensus       220 ~~~i~~~~~~~~~ii~~~p~NPTG~~~s~-~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (459)
                      ++.+.+   +++++++++|+||+|.++++ +.+++|.++|++||+++|+||+|.+++..+   ..+.. ......+++++
T Consensus       181 e~~i~~---~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g---~~~~~-~~~g~~~D~~~  253 (401)
T PRK00854        181 EAAITP---NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTG---KLLAE-EHEGIEADVTL  253 (401)
T ss_pred             HHHhCC---CeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCc---hHhHH-hhcCCCCCEEE
Confidence            998875   78899999999999999874 469999999999999999999998776532   11111 11122223332


Q ss_pred             EEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012647          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  378 (459)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  378 (459)
                         ++|.++-..+|+||+++   +++.++    .+.......+.+.+.+++.++...|+..      .+  +...+++++
T Consensus       254 ---~~K~l~gg~~~ig~v~~---~~~~~~----~l~~~~~~~t~~~~~~~~aa~~a~L~~l------~~--~~~~~~~~~  315 (401)
T PRK00854        254 ---IGKALSGGFYPVSAVLS---NSEVLG----VLKPGQHGSTFGGNPLACAVARAALKVL------TE--EGMIENAAE  315 (401)
T ss_pred             ---ecccccCCccCeEEEEE---cHHHHh----cccCCCCCCCCCcCHHHHHHHHHHHHHH------HH--cCHHHHHHH
Confidence               46999843379999866   777443    3332222223345666666666555321      10  235678888


Q ss_pred             HHHHHHHHHhhccCCCCCcccccCCcceeeec--CC---CHHHHHHHHhcccEEEcCCC----cEEEc-cCChhhHHHHH
Q 012647          379 VRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT--GL---NKAQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLA  448 (459)
Q Consensus       379 ~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~--~l---~~~~~~~ll~~~gI~v~~gg----Ris~~-~~~~e~i~~~~  448 (459)
                      +.+++.+.|+ +++.+. +....+.|.++.+.  +-   ..++++.|++ +||.+.+.+    |+++. ..++++|++++
T Consensus       316 ~~~~l~~~L~-~~~~~~-~~~~~g~g~~~~i~~~~~~~~~~~~~~~L~~-~GV~v~~~~~~~lR~~p~~~~t~e~i~~~i  392 (401)
T PRK00854        316 MGAYFLEGLR-SIRSNI-VREVRGRGLMLAVELEPEAGGARQYCEALKE-RGLLAKDTHDHTIRLAPPLVITREQVDWAL  392 (401)
T ss_pred             HHHHHHHHHH-hhccCc-eEEEeccceEEEEEEecCchhHHHHHHHHHH-CCeEEecCCCCEEEEeCCcccCHHHHHHHH
Confidence            8899999998 765211 11234455555442  21   2345667776 599998653    88864 23899999999


Q ss_pred             HHHHHHHh
Q 012647          449 DAIIDSYH  456 (459)
Q Consensus       449 ~~l~~~~~  456 (459)
                      ++|++++.
T Consensus       393 ~~l~~~l~  400 (401)
T PRK00854        393 EQIAKVLA  400 (401)
T ss_pred             HHHHHHhh
Confidence            99998874

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.89  E-value=8.2e-21  Score=188.25  Aligned_cols=236  Identities=14%  Similarity=0.121  Sum_probs=159.2

Q ss_pred             cHHHHHHHHHHhhcCCCCCCC--CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEE
Q 012647          103 LDVVKKAENLMLERGENKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV  180 (459)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~--~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~V  180 (459)
                      .+.+.+++.........+.|+  ...-..+|++.+++++..        +++++  ++||++|+.++  +...+.+||+|
T Consensus        36 ~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~--------~~~v~--~ssG~~Ai~~a--l~al~~~Gd~V  103 (390)
T PRK08133         36 FESAAEAAARFAGEEPGNIYSRFTNPTVTMFQERLAALEGA--------EACVA--TASGMAAILAV--VMALLQAGDHV  103 (390)
T ss_pred             cCCHHHHHHhhcCCcCCceeECCCChHHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEE
Confidence            445555554443221112233  334467899999998643        45667  89999999987  44557899999


Q ss_pred             EEcCCCCcchH----HHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 012647          181 LISSPTWGNHK----NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD  256 (459)
Q Consensus       181 lv~~p~y~~~~----~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~  256 (459)
                      +++.+.|....    ..++..|++++.++.+       |++++++++++   +++++++++|+||||.+.   ++++|++
T Consensus       104 i~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-------d~~~l~~~i~~---~tklV~ie~p~NptG~v~---dl~~I~~  170 (390)
T PRK08133        104 VSSRSLFGSTVSLFEKIFARFGIETTFVDLT-------DLDAWRAAVRP---NTKLFFLETPSNPLTELA---DIAALAE  170 (390)
T ss_pred             EEccCcchhHHHHHHHHHHHcCcEEEEECCC-------CHHHHHHhcCc---CCeEEEEECCCCCCCCcC---CHHHHHH
Confidence            99999887644    3456789999888762       78899988875   788999999999999994   6788999


Q ss_pred             HHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhh
Q 012647          257 VIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRL  336 (459)
Q Consensus       257 l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~  336 (459)
                      +|+++|+++|+|++|.......      .+    .. ..++++.|+||.++.+|+++|+++  +.+++.++++...+.. 
T Consensus       171 la~~~gi~livD~t~~~~~~~~------pl----~~-g~Divv~S~sK~~~g~g~~~GG~v--v~~~~~~~~~~~~~~~-  236 (390)
T PRK08133        171 IAHAAGALLVVDNCFCTPALQQ------PL----KL-GADVVIHSATKYLDGQGRVLGGAV--VGSKELMEEVFGFLRT-  236 (390)
T ss_pred             HHHHcCCEEEEECCCcccccCC------ch----hh-CCcEEEeecceeecCCcceEeEEE--EcCHHHHHHHHHHHHH-
Confidence            9999999999999986543221      11    11 235789999999998999996653  3366655444433222 


Q ss_pred             ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          337 ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                         .....+...+..   ++..-       +.+..+.+++.+++..+.+.|+ +.
T Consensus       237 ---~g~~~~~~~a~~---~l~gl-------~tl~~R~~~~~~~a~~la~~L~-~~  277 (390)
T PRK08133        237 ---AGPTLSPFNAWV---FLKGL-------ETLSLRMEAHSANALALAEWLE-AH  277 (390)
T ss_pred             ---hCCCCCHHHHHH---HHccc-------chHHHHHHHHHHHHHHHHHHHH-hC
Confidence               111233333222   23321       2245556666678888888888 65

>PLN00144 acetylornithine transaminase

Probab=99.89  E-value=1.7e-20  Score=185.65  Aligned_cols=328  Identities=14%  Similarity=0.035  Sum_probs=201.2

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...+|+..|..-...+..  +|.|.+++.+.++...  .+.. ....+....+++.+....+    .+.+.+  +++|+
T Consensus        14 G~~ylD~~~g~~~~~lGh~--~p~v~~ai~~q~~~~~--~~~~-~~~~~~~~~la~~l~~~~~----~~~v~f--~~sGs   82 (382)
T PLN00144         14 GKEYLDMAAGIAVNALGHG--DPDWVKAVAEQAGTLA--HVSN-VYHTIPQVELAKRLVASSF----ADRVFF--CNSGT   82 (382)
T ss_pred             CCEEEECCcCHHhccCCCC--CHHHHHHHHHHHHhcC--Cccc-cccCHHHHHHHHHHHhcCC----CCeEEE--eCCcH
Confidence            3578888877532223443  7889999988886421  1111 1112223334444332211    357888  99999


Q ss_pred             hHHHHHHHHHHHhCC-------------CCEEEEcCCCCcchHHHhhhCCCC-------------eeeeeeecCCCCCCC
Q 012647          162 GSLRLAAALIERYFP-------------GAKVLISSPTWGNHKNIFNDARVP-------------WSEYRYYDPKTVGLD  215 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~-------------gd~Vlv~~p~y~~~~~~~~~~G~~-------------v~~v~~~~~~~~~~d  215 (459)
                      +|++.+.++...+..             ..+|+....+|.+...........             +..+|.       .|
T Consensus        83 eA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-------~d  155 (382)
T PLN00144         83 EANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEY-------GN  155 (382)
T ss_pred             HHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCC-------CC
Confidence            999999888765531             257999998887664332221111             112221       27


Q ss_pred             HHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCC--HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC
Q 012647          216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPT--PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (459)
Q Consensus       216 ~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s--~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~  293 (459)
                      ++.+++.+..  ....++++...+|| |.+++  .+.+++|.++|++||+++|+||+|.+++..+   ..+.. .+....
T Consensus       156 ~~~l~~~~~~--~~~aavi~eP~q~~-gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g---~~~~~-~~~~~~  228 (382)
T PLN00144        156 LEAARKLIQK--GKTAAVFVEPVQGE-GGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTG---YLWAH-EAYGVE  228 (382)
T ss_pred             HHHHHHhcCC--CCeEEEEEccccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---hHhhh-hhcCCC
Confidence            8899888853  24445555555999 54444  4449999999999999999999999887542   12221 122223


Q ss_pred             CeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHH---HHhCChhhHHHHHHHHH
Q 012647          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVA---NVVGNPALFDEWKAEME  370 (459)
Q Consensus       294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~L~~~~~~~~~~~~~~  370 (459)
                      ++   +.+|||.++ +|+|+||+++   +++..+.+    .......+.+.+.+++.++.   .+++++++    .++++
T Consensus       229 PD---i~t~sK~l~-~G~pig~v~~---~~~~~~~~----~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~----~~~~~  293 (382)
T PLN00144        229 PD---IMTLAKPLA-GGLPIGAVLV---TEKVASAI----NPGDHGSTFAGGPLVCNAALAVLDKISKPGF----LASVA  293 (382)
T ss_pred             CC---EEEeccccc-CCcceEEEEE---cHHHHhcc----CCCCCCCCCCCCHHHHHHHHHHHHHHhhchH----HHHHH
Confidence            44   568999999 8999999976   77744333    22222223355556666665   45555443    23344


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC---CHHHHHHHHhcccEEEcCCC-----cEEEcc-CCh
Q 012647          371 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKDG-----RISLAG-LSL  441 (459)
Q Consensus       371 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~gg-----Ris~~~-~~~  441 (459)
                      ++.+.+   ++.+.+.+. +.+.   +..+. ..|+++|+.+   ...+.+.+++ +||.+.|++     ||+++. .++
T Consensus       294 ~~g~~l---~~~l~~~~~-~~~~---~~~vr-g~G~~~~l~l~~~~~~~~~~~~~-~Gv~i~~~~~~~~lrl~p~~~~~~  364 (382)
T PLN00144        294 KKGEYL---RELLRRKLG-GNPH---VKEVR-GVGLLVGIQLDVPAGPLVDACRD-SGLLVLTAGKGDVVRLVPPLVISE  364 (382)
T ss_pred             HHHHHH---HHHHHHHHh-hCCC---ceeee-cCceEEEEEecCccHHHHHHHHH-CCeEEeecCCCCEEEEeCCCccCH
Confidence            444444   334444444 4421   11122 3688888865   2345566665 699998864     888876 589


Q ss_pred             hhHHHHHHHHHHHHhhc
Q 012647          442 AKCEYLADAIIDSYHNV  458 (459)
Q Consensus       442 e~i~~~~~~l~~~~~~~  458 (459)
                      +++++++++|.+++.++
T Consensus       365 ~~i~~~~~~l~~~l~~~  381 (382)
T PLN00144        365 AELEQAVEILADCLPAL  381 (382)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999999865

>PRK06460 hypothetical protein; Provisional

Probab=99.89  E-value=8.7e-21  Score=187.15  Aligned_cols=214  Identities=14%  Similarity=0.057  Sum_probs=145.0

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCC----cchHHHhhhCCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTW----GNHKNIFNDARV  199 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y----~~~~~~~~~~G~  199 (459)
                      ......+|++++|++....       ..+++   ++|++++..+  +...+.+||+|+++.|.|    ..|...++..|+
T Consensus        43 ~~p~~~~L~~~lA~l~g~~-------~~v~~---~sG~~ai~~~--l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~  110 (376)
T PRK06460         43 ANPTVLELTKKIVELENAE-------MGVAF---SSGMGAISTT--ALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGV  110 (376)
T ss_pred             CCccHHHHHHHHHHHhCCC-------cEEEe---CCHHHHHHHH--HHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCc
Confidence            3567789999999997542       34544   6667888887  444578999999998654    455677788899


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~  279 (459)
                      +++.++.+       +.+.+++.++   ++++++++++||||||.+++.   ++|+++|+++|+++|+|++|......  
T Consensus       111 ~v~~~~~~-------~~~~l~~~~~---~~tklV~l~sp~NPtG~v~d~---~~I~~la~~~g~~vivDea~~~~~~~--  175 (376)
T PRK06460        111 NVDASNPG-------SDNIIEKAKS---KRYDVVFVENITNPLLRVVDI---TELSKVCKENGSILIVDATFSTPINQ--  175 (376)
T ss_pred             EEEEECCC-------CHHHHHHhcC---CCceEEEEECCCCCCCcccCH---HHHHHHHHHcCCEEEEECCcCccccC--
Confidence            98887752       1233443333   378899999999999999765   46888899999999999998754211  


Q ss_pred             CCChhHHHHHHhcCCeEEEEEcCCcCcccC-CCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCC
Q 012647          280 DNDASSVRLFATRGMELLVAQSYSKNLGLY-AERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN  358 (459)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  358 (459)
                        .  .   +  ..+.++++.|+||.++.. |.|+||+++   +++.++.+.....    ....+.+..   .+..++..
T Consensus       176 --~--~---l--~~~~divv~S~sK~l~G~~~~~~G~~~~---~~~l~~~l~~~~~----~~g~~~~~~---~a~~~l~~  236 (376)
T PRK06460        176 --K--P---L--ELGADIVVHSASKFLAGHNDVIAGLAAG---YGKLLNVIDQMRR----TLGTSLDPH---AAYLTLRG  236 (376)
T ss_pred             --C--h---h--hcCCCEEEeecceeccCCCCceEEEEec---CHHHHHHHHHHHH----hcCCCCCHH---HHHHHHhc
Confidence              0  1   1  123568999999998622 367999855   7775555543222    222233332   22333333


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                      .       +.++...+++.++++.+.+.|+ +.
T Consensus       237 ~-------~~l~~r~~~~~~n~~~l~~~L~-~~  261 (376)
T PRK06460        237 I-------KTLKIRMDVINRNAEQIAEFLE-GH  261 (376)
T ss_pred             h-------hhHHHHHHHHHHHHHHHHHHHH-cC
Confidence            2       2256677788889999999998 65

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.89  E-value=7.4e-21  Score=187.12  Aligned_cols=274  Identities=16%  Similarity=0.115  Sum_probs=178.6

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh----hhCCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARV  199 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~G~  199 (459)
                      +.....+|++++|++. .       ++.+ +  +.+|++++.++  +.+.+.+||+|++++|+|..+...+    +..|+
T Consensus        49 ~~p~~~~Le~~lA~l~-~-------~~~v-~--~~sG~~Ai~~~--l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~  115 (366)
T PRK07582         49 SNPTWRALEAALGELE-G-------AEAL-V--FPSGMAAITAV--LRALLRPGDTVVVPADGYYQVRALAREYLAPLGV  115 (366)
T ss_pred             CCccHHHHHHHHHHHc-C-------CCEE-E--ECCHHHHHHHH--HHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeE
Confidence            6778899999999996 2       3444 4  57778898887  4555789999999999998886644    45799


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~  279 (459)
                      +++.++..++      .+    .+.   ++++++++++|+||||.+   .++++|+++|+++|+++|+|++|.... + .
T Consensus       116 ~v~~v~~~~~------~~----~~~---~~t~lV~le~p~NPtg~v---~di~~I~~~a~~~g~~lvVD~t~~~~~-~-~  177 (366)
T PRK07582        116 TVREAPTAGM------AE----AAL---AGADLVLAETPSNPGLDV---CDLAALAAAAHAAGALLVVDNTTATPL-G-Q  177 (366)
T ss_pred             EEEEECCCCh------HH----Hhc---cCceEEEEECCCCCCCCc---cCHHHHHHHHHHcCCEEEEECCCCCcc-c-c
Confidence            9999887311      11    222   267888889999999988   678899999999999999999985321 1 1


Q ss_pred             CCChhHHHHHHhcCCeEEEEEcCCcCc-ccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCC
Q 012647          280 DNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN  358 (459)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  358 (459)
                        .  .+    + ....++++|+||.+ |.+|+|+||+  ++++++..+++....    ......++...+..+...|..
T Consensus       178 --~--p~----~-~g~Divv~S~sK~l~G~~g~~~G~v--~~~~~~l~~~l~~~~----~~~g~~~~~~~a~l~~r~l~t  242 (366)
T PRK07582        178 --R--PL----E-LGADLVVASDTKALTGHSDLLLGYV--AGRDPELMAAVERWR----LLAGAIPGPFEAWLAHRSLGT  242 (366)
T ss_pred             --C--ch----h-cCCcEEEecccccccCCCCeeEEEE--EcCcHHHHHHHHHHH----HHhCCCCCHHHHHHHHhcccc
Confidence              0  11    1 12347889999998 4577999998  445566555444322    222334455555555444443


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccc----ccC-----------Ccceeeec-CCCHHHHHHHHh
Q 012647          359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF----ILR-----------QIGMFSFT-GLNKAQSDNMTN  422 (459)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~~~-----------~~g~f~~~-~l~~~~~~~ll~  422 (459)
                                +....++..++...+.+.|+ +.+.-..+.+    -.|           .||++.|. + +.+.+.+.++
T Consensus       243 ----------l~~R~~~~~~na~~la~~L~-~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~-~~~~~~~~~~  310 (366)
T PRK07582        243 ----------LGLRFARQCANALAVAELLA-GHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA-DAAAAERFVA  310 (366)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHH-hCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC-CHHHHHHHHH
Confidence                      23444566677777777787 6532000110    012           36666553 3 5566667776


Q ss_pred             cccEEEc---------------------CCC--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          423 KWHVYMT---------------------KDG--RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       423 ~~gI~v~---------------------~gg--Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      +.++...                     +.|  |+|++-   |+.+.+++.|.++++.+
T Consensus       311 ~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~liR~svGl---E~~~dli~dl~~al~~~  366 (366)
T PRK07582        311 ASRLVVAATSFGGVHTSADRRARWGDAVPEGFVRLSCGI---EDTDDLVADLERALDAL  366 (366)
T ss_pred             hCCcceecccCCCccchhhhHHHcCCCCCCCeEEEEecc---CCHHHHHHHHHHHHhhC
Confidence            6665432                     112  999876   56677777777777653

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.88  E-value=3.1e-20  Score=185.93  Aligned_cols=338  Identities=10%  Similarity=0.013  Sum_probs=198.2

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      +...+|+..|..-...|.  .+|.|.+++.+.++... ...........++++.++++.    +    .+.+++  +++|
T Consensus        30 g~~~lD~~~~~~~~~~Gh--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~----~~~~~~--~~SG   97 (400)
T PTZ00125         30 GKKYYDFLSAYSAVNQGH--CHPKILAALINQAQKLTLTSRAFYNDVLGLAEKYITDLF----G----YDKVLP--MNSG   97 (400)
T ss_pred             CCEEEEcccCHhhccCCc--CCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHhCC----C----CCEEEE--eCCc
Confidence            356889887743111122  37889999988775321 011111223344555555542    1    256778  8999


Q ss_pred             hhHHHHHHHHHHHh--------CCCCEEEEcCCCCcchHHHhh-hCCCCee---eeeeecC--CCCCCCHHHHHHHHHcC
Q 012647          161 TGSLRLAAALIERY--------FPGAKVLISSPTWGNHKNIFN-DARVPWS---EYRYYDP--KTVGLDFEGMIADIKAA  226 (459)
Q Consensus       161 t~a~~l~~~~~~~~--------~~gd~Vlv~~p~y~~~~~~~~-~~G~~v~---~v~~~~~--~~~~~d~e~l~~~i~~~  226 (459)
                      ++|++.+.++....        ..+++|++.+-+|........ ..+....   ..+....  .-...|++.+++.++. 
T Consensus        98 s~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-  176 (400)
T PTZ00125         98 AEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQD-  176 (400)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCC-
Confidence            99999997765432        135789988888776533222 2221100   0010000  0001389999999862 


Q ss_pred             CCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC
Q 012647          227 PGGSFILLHGCAHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (459)
Q Consensus       227 ~~~~~~ii~~~p~NPTG~~~s-~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (459)
                       ++++++++.+++||||.+++ .+.+++|.++|++||+++|+||+|.+++..+   ..+.. ......++++   ++||.
T Consensus       177 -~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G---~~~~~-~~~~~~pd~~---~~sK~  248 (400)
T PTZ00125        177 -PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTG---KLLAH-DHEGVKPDIV---LLGKA  248 (400)
T ss_pred             -CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc---hhhHH-HhcCCCCCEE---EEccc
Confidence             36788888889999999886 4569999999999999999999998876532   11111 1111222333   47899


Q ss_pred             cccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          306 LGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD  385 (459)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  385 (459)
                      ++.+++|+||+++   +++..+.    +.......+.+.+.+.+.++...|+.-      .+  +...++.+++.+.+.+
T Consensus       249 l~~g~~~ig~v~~---~~~~~~~----~~~~~~~~t~~~~~~~~~aa~~~l~~i------~~--~~~~~~~~~~~~~l~~  313 (400)
T PTZ00125        249 LSGGLYPISAVLA---NDDVMLV----IKPGEHGSTYGGNPLACAVAVEALEVL------KE--EKLAENAQRLGEVFRD  313 (400)
T ss_pred             ccCCCcCcEEEEE---cHHHHhh----ccCCCCCCCCCcCHHHHHHHHHHHHHH------Hh--cCHHHHHHHHHHHHHH
Confidence            9854469999876   7774433    332222223344555666654443210      00  1223444445555566


Q ss_pred             HHhhcc-CCCCCcccccCCcceeeecCC------C-HHHHHHHHhcccEEEcCCC----cEEEcc-CChhhHHHHHHHHH
Q 012647          386 SLSAKD-KSGKDWSFILRQIGMFSFTGL------N-KAQSDNMTNKWHVYMTKDG----RISLAG-LSLAKCEYLADAII  452 (459)
Q Consensus       386 ~L~~~~-g~~~~~~~~~~~~g~f~~~~l------~-~~~~~~ll~~~gI~v~~gg----Ris~~~-~~~e~i~~~~~~l~  452 (459)
                      .|+ ++ +..+.+....+. |.+.|+.+      + .++.++|++ +||.+.|++    ||+... .+++++++++++|.
T Consensus       314 ~l~-~l~~~~~~~~~~~~~-g~~~~v~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~l~~l~  390 (400)
T PTZ00125        314 GLK-ELLKKSPWVKEIRGK-GLLNAIVFDHSDGVNAWDLCLKLKE-NGLLAKPTHDNIIRFAPPLVITKEQLDQALEIIK  390 (400)
T ss_pred             HHH-HHHhcCCCeEEEecc-cEEEEEEEccCcchHHHHHHHHHHH-CCeEEeecCCCEEEEECCccCCHHHHHHHHHHHH
Confidence            665 43 111112223444 44544422      1 245667765 599999875    888542 38999999999999


Q ss_pred             HHHhhc
Q 012647          453 DSYHNV  458 (459)
Q Consensus       453 ~~~~~~  458 (459)
                      ++++++
T Consensus       391 ~~l~~~  396 (400)
T PTZ00125        391 KVLKSF  396 (400)
T ss_pred             HHHHHH
Confidence            988765

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.88  E-value=2.4e-20  Score=184.98  Aligned_cols=274  Identities=14%  Similarity=0.102  Sum_probs=177.5

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh----hCCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARV  199 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~G~  199 (459)
                      +.....+|++.+|++...       ++.++   +++|+.++..+  +...+.+||+|+++.|.|......+.    ..|+
T Consensus        59 ~~pt~~~Le~~lA~l~G~-------~~al~---~~sG~~Ai~~~--l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi  126 (386)
T PRK06767         59 GNPTVKLFEERMAVLEGG-------EEALA---FGSGMAAISAT--LIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMI  126 (386)
T ss_pred             CCcchHHHHHHHHHHhCC-------CcEEE---ECCHHHHHHHH--HHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCe
Confidence            555678999999999643       34444   47778888877  45557899999999998876555443    3454


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~  279 (459)
                      ++..++.       .|++++++++++   +++++++++|+||||.+++   +++|.++|+++|+++|+|++|....... 
T Consensus       127 ~~~~~~~-------~d~~~l~~~i~~---~tklV~lesp~NptG~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~~-  192 (386)
T PRK06767        127 THSFCDM-------ETEADIENKIRP---NTKLIFVETPINPTMKLID---LKQVIRVAKRNGLLVIVDNTFCSPYLQR-  192 (386)
T ss_pred             EEEEeCC-------CCHHHHHHhhCc---CceEEEEeCCCCCCceecC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence            4433322       478999998875   7889999999999999954   6788899999999999999986433210 


Q ss_pred             CCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc-ceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCC
Q 012647          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN  358 (459)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  358 (459)
                           .+    . ...++++.|+||.++.+|+|+ ||+++   +++.++++.......   .....+.+.+.++...|+.
T Consensus       193 -----pl----~-~g~Div~~S~sK~l~g~g~~~gG~v~~---~~~~i~~~~~~~~~~---~g~~~~~~~a~l~~~~L~t  256 (386)
T PRK06767        193 -----PL----E-LGCDAVVHSATKYIGGHGDVVAGVTIC---KTRALAEKIRPMRKD---IGGIMAPFDAWLLLRGLKT  256 (386)
T ss_pred             -----ch----h-cCCcEEEecCcceecCCCCceeEEEEe---ChHHHHHHHHHHHHH---hCCCCCHHHHHHHHcCCCc
Confidence                 11    1 123578899999999899997 77654   666555544332221   1112333333333332322


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccc-c-----------cCCcceeeec-CCCH----HHHHHHH
Q 012647          359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF-I-----------LRQIGMFSFT-GLNK----AQSDNMT  421 (459)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~-----------~~~~g~f~~~-~l~~----~~~~~ll  421 (459)
                                +....++.+++.+.+.+.|+ +++.   +.. .           ...+|++.|. .-+.    ++++.| 
T Consensus       257 ----------l~~r~~~~~~~a~~la~~L~-~~p~---v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l-  321 (386)
T PRK06767        257 ----------LAVRMDRHCDNAEKIVSFLK-NHDA---VEGVWYPEGELASRQMKRGGGVISFSIKGGKEETQAFINDL-  321 (386)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHH-cCCC---ccEEECCCcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhC-
Confidence                      34556677888888888998 7631   331 1           1235666543 2122    233333 


Q ss_pred             hcccEEEcCCC-------------------------------cEEEccCChhhHHHHHHHHHHHHhh
Q 012647          422 NKWHVYMTKDG-------------------------------RISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       422 ~~~gI~v~~gg-------------------------------Ris~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                      +..++.+.=||                               |||++-   |+.+.+++-|.++++.
T Consensus       322 ~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl---E~~~dl~~dl~~al~~  385 (386)
T PRK06767        322 HFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGL---ESWEDIVSDLEQALKK  385 (386)
T ss_pred             CccEEecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence            44566554441                               899865   6778888888887764

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.88  E-value=1.2e-20  Score=187.07  Aligned_cols=216  Identities=18%  Similarity=0.152  Sum_probs=150.8

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HhhhCCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARV  199 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~G~  199 (459)
                      +..-..+|++.+|++...        ++.++  +++|++++.++  +...+.+||+|+++.|+|.....    .++..|+
T Consensus        62 ~~p~~~~le~~lA~l~g~--------~~~i~--~ssG~~Ai~~~--l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi  129 (398)
T PRK08249         62 TNPTVQAFEEKVRILEGA--------EAATA--FSTGMAAISNT--LYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGV  129 (398)
T ss_pred             CChHHHHHHHHHHHHhCC--------CeEEE--eCChHHHHHHH--HHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCe
Confidence            455678999999999653        23445  68888999887  44557899999999999987543    3456788


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~  279 (459)
                      +++.++.       .|++.+++++++   +++++++++|+||||.+++   +++|+++|+++|+++|+|++|....... 
T Consensus       130 ~v~~vd~-------~d~e~l~~~i~~---~tklV~ie~p~NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~-  195 (398)
T PRK08249        130 DVTLCET-------GDHEQIEAEIAK---GCDLLYLETPTNPTLKIVD---IERLAAAAKKVGALVVVDNTFATPINQN-  195 (398)
T ss_pred             EEEEcCC-------CCHHHHHHhcCC---CCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCcCccccCC-
Confidence            7776543       589999999975   7889999999999999955   7779999999999999999988654321 


Q ss_pred             CCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCCh
Q 012647          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNP  359 (459)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~  359 (459)
                           .+    . ....+++.|+||.++.+|.++|++  ++.+++..+++....    .......+...+.++..-|+  
T Consensus       196 -----~l----~-~~~Divv~S~sK~l~g~~~~~gG~--vv~~~~l~~~l~~~~----~~~g~~~s~~~a~l~l~~l~--  257 (398)
T PRK08249        196 -----PL----A-LGADLVIHSATKFLSGHADALGGV--VCGSKELMEQVYHYR----EINGATMDPMSAYLILRGMK--  257 (398)
T ss_pred             -----ch----h-hCCCEEeccCceecCCCCCceEEE--EECCHHHHHHHHHHH----HhcCCCCCHHHHHHHHhCcc--
Confidence                 11    1 123477899999999788888655  334777555544322    22222444444444332222  


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          360 ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                              .+....++..++++.+.+.|+ +.+
T Consensus       258 --------tL~~R~~~~~~na~~la~~L~-~~p  281 (398)
T PRK08249        258 --------TLKLRVRQQQESAMALAKYLQ-THP  281 (398)
T ss_pred             --------hHHHHHHHHHHHHHHHHHHHH-cCC
Confidence                    234555666777788888887 653

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.88  E-value=1.5e-20  Score=187.42  Aligned_cols=329  Identities=14%  Similarity=0.101  Sum_probs=205.1

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC--CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...+|+..|..-+.-|..  +|.|.+++.+.+++..  ...| +..-..+|.+.++++.    +    .+.+.+  +++
T Consensus        34 G~~ylD~~~g~~~~~lGh~--~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~la~~L~~~~----~----~~~~~f--~~S  100 (397)
T TIGR03246        34 GKEYIDFAGGIAVNALGHA--HPELVKALIEQADKLWHIGNGY-TNEPVLRLAKKLVDAT----F----ADKVFF--CNS  100 (397)
T ss_pred             CCEEEECCcCHhhccCCCC--CHHHHHHHHHHHHhcccccCcc-CCHHHHHHHHHHHhhC----C----CCEEEE--eCC
Confidence            4578999887543344553  7899999988876421  1122 2222345666666552    1    257888  999


Q ss_pred             chhHHHHHHHHHHHhC------CCCEEEEcCCCCcchH-HHhhhCCC------------CeeeeeeecCCCCCCCHHHHH
Q 012647          160 GTGSLRLAAALIERYF------PGAKVLISSPTWGNHK-NIFNDARV------------PWSEYRYYDPKTVGLDFEGMI  220 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~------~gd~Vlv~~p~y~~~~-~~~~~~G~------------~v~~v~~~~~~~~~~d~e~l~  220 (459)
                      |++|++.+.++...+.      ..++|+..+-+|.+.. ..+...|.            .+..+|.       .|++.++
T Consensus       101 GseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~  173 (397)
T TIGR03246       101 GAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPY-------NDLAAAK  173 (397)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCC-------CCHHHHH
Confidence            9999999988776552      2367888887776653 22232221            1122222       3789999


Q ss_pred             HHHHcCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012647          221 ADIKAAPGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (459)
Q Consensus       221 ~~i~~~~~~~~~ii~~~p~NPTG~~~-s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~  299 (459)
                      +.+.+   +++++++..++++.|... +++.+++|.++|++||+++|+||+|.+++..+   ..+....+ ...++++  
T Consensus       174 ~~l~~---~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G---~~~a~~~~-gv~pDi~--  244 (397)
T TIGR03246       174 ALISD---KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTG---ELYAYMHY-GVTPDIL--  244 (397)
T ss_pred             HHhcc---CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccc---cchhhhhc-CCCCCEE--
Confidence            98864   677777776666667554 88999999999999999999999998886432   12221111 2223333  


Q ss_pred             EcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012647          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV  379 (459)
Q Consensus       300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~  379 (459)
                       ++||.++ .|+|+||+++   +++    +.+.+.......+.+.+.+++.++...|+..      .  -++..++++++
T Consensus       245 -t~~K~lg-gG~pigav~~---~~~----i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~------~--~~~l~~~~~~~  307 (397)
T TIGR03246       245 -TSAKALG-GGFPIGAMLT---TTE----IAAHLKVGTHGTTYGGNPLACAVAGKVLDLV------N--TPELLAGVKQR  307 (397)
T ss_pred             -Eeehhhh-CCcceeEEEE---cHH----HHHhccCCCcCCCCCCCHHHHHHHHHHHHHH------h--hccHHHHHHHH
Confidence             7999998 8999999876   777    4443332222222234445555554444311      0  13456788888


Q ss_pred             HHHHHHHHhhccCCCCC-cccccCCcceeeec--C----CCHHHHHHHHhcccEEEcCCC----cEEEcc-CChhhHHHH
Q 012647          380 RQKLFDSLSAKDKSGKD-WSFILRQIGMFSFT--G----LNKAQSDNMTNKWHVYMTKDG----RISLAG-LSLAKCEYL  447 (459)
Q Consensus       380 ~~~l~~~L~~~~g~~~~-~~~~~~~~g~f~~~--~----l~~~~~~~ll~~~gI~v~~gg----Ris~~~-~~~e~i~~~  447 (459)
                      .+++.+.|+ +++.... +..+...|.++.+.  .    ....+++.|++ +||.+.+.|    |++.+. .++++++++
T Consensus       308 ~~~l~~~L~-~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~l~~-~Gv~~~~~g~~~lR~~p~~~~t~~~i~~~  385 (397)
T TIGR03246       308 HDLFVDGLE-KINARYNVFSEIRGKGLLIGAVLTEAYQGKAKQFVNAAAE-EGVIALIAGPNVVRFAPSLVISDDDIDEG  385 (397)
T ss_pred             HHHHHHHHH-HHHhcCCCeEeeecCceEEEEEEcCchhhHHHHHHHHHHH-CCeEEeecCCCEEEEeCCCCCCHHHHHHH
Confidence            888888887 6541111 22233344433221  1    12345666666 599987654    774332 289999999


Q ss_pred             HHHHHHHHhhc
Q 012647          448 ADAIIDSYHNV  458 (459)
Q Consensus       448 ~~~l~~~~~~~  458 (459)
                      +++|.+++.++
T Consensus       386 ~~~l~~~l~~~  396 (397)
T TIGR03246       386 LARFERAIEQV  396 (397)
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.88  E-value=1.4e-20  Score=186.98  Aligned_cols=215  Identities=12%  Similarity=0.113  Sum_probs=146.6

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh----hhCCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARV  199 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~G~  199 (459)
                      +..-..+|++.+|++....       . ..+  +++|+.++..+  +...+.+||+|+++.|.|..+...+    +..|+
T Consensus        63 ~~p~~~~Le~~lA~l~G~~-------~-~~~--~~sG~~Ai~~~--l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~  130 (398)
T PRK07504         63 SNPTVDMFEKRMCALEGAE-------D-ARA--TASGMAAVTAA--ILCQVKAGDHVVAARALFGSCRYVVETLLPRYGI  130 (398)
T ss_pred             CCchHHHHHHHHHHHhCCC-------e-eeE--ecCHHHHHHHH--HHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCe
Confidence            4556789999999996442       2 233  57888888766  4455789999999999998765443    45688


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~  279 (459)
                      +++.++       .+|++.+++++++   ++++|++++|+||||.+++   +++|.++|+++|+++|+|++|....... 
T Consensus       131 ~v~~vd-------~~d~e~l~~ai~~---~tklV~lesp~NptG~v~d---l~~I~~la~~~gi~lvvD~a~a~~~~~~-  196 (398)
T PRK07504        131 ESTLVD-------GLDLDNWEKAVRP---NTKVFFLESPTNPTLEVID---IAAVAKIANQAGAKLVVDNVFATPLFQK-  196 (398)
T ss_pred             EEEEEC-------CCCHHHHHHhcCc---CceEEEEECCCCCCcEecC---HHHHHHHHHHcCCEEEEECCccccccCC-
Confidence            777764       2689999999875   7889999999999999964   7788899999999999999987544321 


Q ss_pred             CCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHH-HHHHHHhhccccccCCchHHHHHHHHHhCC
Q 012647          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR-VKSQLKRLARPMYSNPPVHGARIVANVVGN  358 (459)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  358 (459)
                           ..     ..+.++++.|+||.++.+|+|+|+++  +.+++.+.+ +...+.    ......+...+.++..-|+ 
T Consensus       197 -----~~-----~~gaDivv~S~sK~l~g~g~~~GG~v--v~~~~~i~~~~~~~~~----~~g~~~s~~~A~~~l~~L~-  259 (398)
T PRK07504        197 -----PL-----ELGAHIVVYSATKHIDGQGRCLGGVV--LSDKAWIEEHLQDYFR----HTGPSLSPFNAWTLLKGLE-  259 (398)
T ss_pred             -----ch-----hhCCCEEEeeccccccCCccceEEEE--EeCcHHHHHHHHHHHH----HhCCCCCHHHHHHHHhccc-
Confidence                 11     11346889999999998999998663  235553332 222222    1122333333333332222 


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                               .+....++..++...+.+.|+ +.
T Consensus       260 ---------tl~~R~~~~~~na~~la~~L~-~~  282 (398)
T PRK07504        260 ---------TLPVRVRQQTESAAAIADFLA-GH  282 (398)
T ss_pred             ---------hHHHHHHHHHHHHHHHHHHHH-cC
Confidence                     234455555667777777777 54

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.88  E-value=1.7e-20  Score=185.99  Aligned_cols=315  Identities=18%  Similarity=0.169  Sum_probs=212.3

Q ss_pred             cCCCCCCccCcHHHHHHHHHHhhcCCCC----CCCC----CcccHHHHHHHHHHHhcCCCCcccc-CceEEeecccchhH
Q 012647           93 YRTEELQPYVLDVVKKAENLMLERGENK----EYLP----IEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGLSGTGS  163 (459)
Q Consensus        93 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~----~Y~~----~~g~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~ggt~a  163 (459)
                      |+|..+..++|+.|.+++.+.+......    .+..    ..-+.++|+.++++++..      + ++|++  +.|+|.+
T Consensus         2 Yld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~------~~~~v~~--~~~~t~a   73 (371)
T PF00266_consen    2 YLDNAGTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAP------PDEEVVF--TSNGTEA   73 (371)
T ss_dssp             EEBTSSS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSS------TTEEEEE--ESSHHHH
T ss_pred             EeeCCCccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCc------ccccccc--ccccchh
Confidence            4566666677999999999887432111    1111    224468899999998765      4 78988  9999999


Q ss_pred             HHHHHHHHHH-hCCCCEEEEcCCCCcchH----HHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCC
Q 012647          164 LRLAAALIER-YFPGAKVLISSPTWGNHK----NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA  238 (459)
Q Consensus       164 ~~l~~~~~~~-~~~gd~Vlv~~p~y~~~~----~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p  238 (459)
                      ++.+...+.. +.+||+|++.+-.|+...    ...+..|++++.+|.+  .+..+|++.+++++++   ++++++++..
T Consensus        74 ~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~--~~~~~~~~~~~~~l~~---~~~lv~~~~~  148 (371)
T PF00266_consen   74 LNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPAD--PGGSLDLEDLEEALNP---DTRLVSISHV  148 (371)
T ss_dssp             HHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEG--TTSSCSHHHHHHHHHT---TESEEEEESB
T ss_pred             hhhhhhccccccccccccccccccccccccccccccccchhhhcccccc--ccchhhhhhhhhhhcc---ccceEEeecc
Confidence            9998444321 679999999998887655    3445779999999984  4568999999999985   8889988999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012647          239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (459)
Q Consensus       239 ~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (459)
                      +|-||..   .++++|.++|+++|+++++|.+ +.++..+.+         +...+.++++.|..|.+|++|  +|++++
T Consensus       149 ~~~tG~~---~pi~~I~~~~~~~~~~~~vD~~-~~~g~~~id---------~~~~~~D~~~~s~~Kl~gp~G--~g~l~v  213 (371)
T PF00266_consen  149 ENSTGVR---NPIEEIAKLAHEYGALLVVDAA-QSAGCVPID---------LDELGADFLVFSSHKLGGPPG--LGFLYV  213 (371)
T ss_dssp             ETTTTBB---SSHHHHHHHHHHTTSEEEEE-T-TTTTTSS-----------TTTTTESEEEEESTSTTSSST--EEEEEE
T ss_pred             cccccEE---eeeceehhhhhccCCceeEech-hcccccccc---------ccccccceeeecccccCCCCc--hhhhee
Confidence            9999999   5677899999999999999999 556543222         233456789999999777777  799987


Q ss_pred             EeCChhHHHHHHHHHH-----------h-----hccccc-cCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 012647          319 VCSSSDLAARVKSQLK-----------R-----LARPMY-SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQ  381 (459)
Q Consensus       319 v~~~~~~~~~~~~~~~-----------~-----~~~~~~-~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~  381 (459)
                         +++..+++.....           .     ...... +.++.....++...++   +..  +..+++++++..++.+
T Consensus       214 ---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~---~~~--~~g~~~i~~~~~~l~~  285 (371)
T PF00266_consen  214 ---RPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALK---LLE--EIGIERIRERIRELAE  285 (371)
T ss_dssp             ---EHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHH---HHH--HHHHHHHHHHHHHHHH
T ss_pred             ---hhhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHh---hhh--ccccccchhhhhhHHH
Confidence               7775555521100           0     000011 1233333333222221   111  2346888899999999


Q ss_pred             HHHHHHhhccCCCCCcccccC-----Cccee--eecCCCHHHHHHHHhcccEEEcCC--------------C--cEEEcc
Q 012647          382 KLFDSLSAKDKSGKDWSFILR-----QIGMF--SFTGLNKAQSDNMTNKWHVYMTKD--------------G--RISLAG  438 (459)
Q Consensus       382 ~l~~~L~~~~g~~~~~~~~~~-----~~g~f--~~~~l~~~~~~~ll~~~gI~v~~g--------------g--Ris~~~  438 (459)
                      ++.+.|. +++.   +.+..+     .++..  .+.+.+.+.+...+++.||.+..|              |  |||+..
T Consensus       286 ~~~~~l~-~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~  361 (371)
T PF00266_consen  286 YLREALE-ELPG---IEVLGPDDEPRRPSIVSFNLPGSDADDVVKYLEERGIAVSTGSACAGPSLDILGMGGVIRVSLHY  361 (371)
T ss_dssp             HHHHHHH-HTTT---EEESSSSCGGBGTTEEEEEETTSSHHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GT
T ss_pred             HHHhhhh-cCCc---eeEeeecccccccceEEEeecCCCHHHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEEEEeccC
Confidence            9999999 8752   444332     23333  334667766665555569999874              3  999887


Q ss_pred             C-ChhhHHHH
Q 012647          439 L-SLAKCEYL  447 (459)
Q Consensus       439 ~-~~e~i~~~  447 (459)
                      + |++||+++
T Consensus       362 ~nt~~dv~~l  371 (371)
T PF00266_consen  362 YNTEEDVDRL  371 (371)
T ss_dssp             TSSHHHHHHH
T ss_pred             CCCHHHHhhC
Confidence            7 78888875

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.88  E-value=4.5e-20  Score=182.20  Aligned_cols=222  Identities=14%  Similarity=0.078  Sum_probs=149.3

Q ss_pred             CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhh-CC
Q 012647          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-AR  198 (459)
Q Consensus       120 ~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~G  198 (459)
                      .+| +.....+|++++|++..        .+++++  ++||++++.++  +...+.+||+|+++.|+|......+.. .+
T Consensus        46 ~R~-~~p~~~~le~~lA~l~g--------~~~v~~--~~gg~~Ai~~~--l~all~~GD~Vl~~~p~y~~~~~~~~~~~~  112 (382)
T TIGR02080        46 SRS-GNPTRDLLQQALAELEG--------GAGAVV--TNTGMSAIHLV--TTALLGPDDLLVAPHDCYGGTYRLLNALAK  112 (382)
T ss_pred             cCC-CCchHHHHHHHHHHHhC--------CCcEEE--EcCHHHHHHHH--HHHHcCCCCEEEEcCCCcHHHHHHHHHHHh
Confidence            344 55567899999999863        256888  99999999998  444578999999999999865544432 22


Q ss_pred             CCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCC
Q 012647          199 VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGS  278 (459)
Q Consensus       199 ~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~  278 (459)
                      .....+...+    ..|++.+++++++   +++++++++|+||||.+++   +++|+++|+++|+++|+|++|.......
T Consensus       113 ~~~~~v~~~d----~~d~~~l~~ai~~---~tklV~l~~p~NPtG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~~  182 (382)
T TIGR02080       113 KGCFRVLFVD----QGDEQALRAALAQ---KPKLVLIETPSNPLLRVVD---IAKICHLAKAVGAVVVVDNTFLSPALQN  182 (382)
T ss_pred             hcCeEEEEEC----CCCHHHHHHhcCc---CceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCcccccCC
Confidence            2223333321    1378999999875   6889999999999999965   6678888999999999999997654221


Q ss_pred             CCCChhHHHHHHhcCCeEEEEEcCCcCcc-cCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhC
Q 012647          279 LDNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVG  357 (459)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  357 (459)
                            .+.    . ..+++++|+||.++ .+|++.|++  ++.+++..+++...    ........+...+..+..-++
T Consensus       183 ------pl~----~-gaDivv~S~sK~l~G~~~~~~G~i--~~~~~~~~~~l~~~----~~~~g~~~sp~~a~l~lr~l~  245 (382)
T TIGR02080       183 ------PLA----L-GADLVLHSCTKYLNGHSDVIAGAV--IAKDPQVAEELAWW----ANNLGVTGGAFDSYLTLRGLR  245 (382)
T ss_pred             ------chh----h-CCCEEEeecceeccCCCCceeEEE--EeCCHHHHHHHHHH----HHccCCCCCHHHHHHHHcccc
Confidence                  111    1 23588899999885 578899997  45566654444322    222222444444443322222


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          358 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                                .+....++..++...+.+.|+ ..+
T Consensus       246 ----------tl~~R~~~~~~na~~~a~~L~-~~p  269 (382)
T TIGR02080       246 ----------TLVARMRLQQRNAQAIVEYLQ-TQP  269 (382)
T ss_pred             ----------hHHHHHHHHHHHHHHHHHHHH-hCC
Confidence                      234445566677777777777 543

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.87  E-value=1.2e-19  Score=181.97  Aligned_cols=338  Identities=11%  Similarity=0.014  Sum_probs=197.5

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCC--CCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y--~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...+|+..|.--..-+..  +|.|.+++.+.+++.....+  .+.....++-+.+++.....     ..+.+.+  +++
T Consensus        32 G~~ylD~~~g~~~~~lGh~--~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~-----~~~~v~f--~~s  102 (420)
T TIGR00700        32 GNRLIDFASGIAVLNIGHS--HPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRIAPGS-----GPKKSVF--FNS  102 (420)
T ss_pred             CCEEEECccCHHhccCCCC--CHHHHHHHHHHHHhccCccccccCChHHHHHHHHHHHhCCCC-----CCCEEEE--eCC
Confidence            3567888887542223443  68899999888865321122  12222334555555543211     0257888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhC-C--------C-----CeeeeeeecCCC---------CCCCH
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA-R--------V-----PWSEYRYYDPKT---------VGLDF  216 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-G--------~-----~v~~v~~~~~~~---------~~~d~  216 (459)
                      |++|++.+.++...+....+|+....+|.+........ |        .     .+..+|......         +.-++
T Consensus       103 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (420)
T TIGR00700       103 GAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGEL  182 (420)
T ss_pred             cHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHH
Confidence            99999999988876665678999998887653322211 1        1     122233210000         00024


Q ss_pred             HHHHHHHH--cCCCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC
Q 012647          217 EGMIADIK--AAPGGSFILLHGCAHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (459)
Q Consensus       217 e~l~~~i~--~~~~~~~~ii~~~p~NPTG~~~s-~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~  293 (459)
                      +.+++.+.  ..++....+|+...+.-+|.+++ ++.+++|.++|++||+++|+||+|.+++..+   ..++...+ +..
T Consensus       183 ~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g---~~~a~~~~-~~~  258 (420)
T TIGR00700       183 AAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTG---AMFACEHE-GPE  258 (420)
T ss_pred             HHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccc---hhHHHhhc-CCC
Confidence            56666653  22346677777777777888665 4459999999999999999999999997643   12222221 222


Q ss_pred             CeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHh---CChhhHHHHHHHHH
Q 012647          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVV---GNPALFDEWKAEME  370 (459)
Q Consensus       294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L---~~~~~~~~~~~~~~  370 (459)
                      +++   .+|||.++ +|+|+||+++   ++++    .+.+.......+.+.+.+++.++...|   +++.+    .+.++
T Consensus       259 pDi---~~lsK~l~-~G~pig~v~~---~~~i----~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~----~~~~~  323 (420)
T TIGR00700       259 PDL---ITTAKSLA-DGLPLSGVTG---RAEI----MDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGL----IERAR  323 (420)
T ss_pred             CCE---EEeecccc-CCcceEEEEe---cHHH----HhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccH----HHHHH
Confidence            343   36999999 9999999976   7774    333322222233355666776664443   33222    22223


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC--------CHHH----HHHHHhcccEEEcCCC------
Q 012647          371 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--------NKAQ----SDNMTNKWHVYMTKDG------  432 (459)
Q Consensus       371 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l--------~~~~----~~~ll~~~gI~v~~gg------  432 (459)
                      +..++   .++.|.+... +++.   +..+.+. |.+.|+.+        +.++    .+.++ ++||.+.|++      
T Consensus       324 ~~g~~---l~~~L~~l~~-~~~~---~~~vrg~-G~~~~i~~~~~~~~~~~~~~~~~l~~~~~-~~Gv~i~p~~~f~~~l  394 (420)
T TIGR00700       324 QIGRL---VTDRLTTLKA-VDPR---IGDVRGL-GAMIAVELVDPGTTEPDAGLAERIATAAH-AAGLLLLTCGMFGNII  394 (420)
T ss_pred             HHHHH---HHHHHHHHHh-hCCC---EEEeecc-ceEEEEEEecCCCCCccHHHHHHHHHHHH-HCCeEEeccCCCCCEE
Confidence            33333   2223322222 3321   3344555 44544422        1222    33334 4699999863      


Q ss_pred             cEEEcc-CChhhHHHHHHHHHHHHh
Q 012647          433 RISLAG-LSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       433 Ris~~~-~~~e~i~~~~~~l~~~~~  456 (459)
                      ||+++. .+++++++++++|.++++
T Consensus       395 Rl~p~l~~~~~~l~~~~~~l~~~l~  419 (420)
T TIGR00700       395 RFLPPLTIGDELLSEGLDILCAILA  419 (420)
T ss_pred             EEECCCCcCHHHHHHHHHHHHHHhh
Confidence            888754 489999999999999875

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.87  E-value=1.2e-19  Score=181.76  Aligned_cols=336  Identities=10%  Similarity=0.064  Sum_probs=199.2

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCC--CCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y--~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...+|+..|..-...+..  +|.|.+++.+.++......+  .+..-..++-+.+++.....     ..+.+.+  +++
T Consensus        39 G~~ylD~~~g~~~~~lGh~--~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~-----~~~~~~f--~~s  109 (421)
T PRK09792         39 GNEYIDFAAGIAVLNTGHR--HPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINALAPVS-----GQAKTAF--FTT  109 (421)
T ss_pred             CCEEEEccCchhhhcCCCC--CHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHHhCCCC-----CCceEEE--eCC
Confidence            3567888777542223443  78899998888765321111  12222234444444432110     0256888  889


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhh-CC--------C-----CeeeeeeecCCCCCC----CHHHHHH
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-AR--------V-----PWSEYRYYDPKTVGL----DFEGMIA  221 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~G--------~-----~v~~v~~~~~~~~~~----d~e~l~~  221 (459)
                      |++|++.+.++...+....+|+....+|.+....... .|        .     .+..+|+..+. .++    +++.+++
T Consensus       110 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~-~~~~~~~~~~~l~~  188 (421)
T PRK09792        110 GAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDL-HGISTQDSLDAIER  188 (421)
T ss_pred             hHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccc-ccccHHHHHHHHHH
Confidence            9999999988877665556899999888765322111 11        0     12333332111 122    3477777


Q ss_pred             HHHc--CCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012647          222 DIKA--APGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (459)
Q Consensus       222 ~i~~--~~~~~~~ii~~~p~NPTG~~~-s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (459)
                      .+..  .+++..++++...++|+|..+ +++.+++|.++|++||+++|+||+|.+++..+   ..+....+ ...++   
T Consensus       189 ~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G---~~~a~~~~-~~~pD---  261 (421)
T PRK09792        189 LFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTG---KLFAMDHY-ADKPD---  261 (421)
T ss_pred             HHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCC---chhHHHhc-CCCCc---
Confidence            7763  123556666667799999865 89999999999999999999999999987543   23333333 22334   


Q ss_pred             EEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHH---HHhCChhhHHHHHHHHHHHHHH
Q 012647          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVA---NVVGNPALFDEWKAEMEMMAGR  375 (459)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~L~~~~~~~~~~~~~~~~~~~  375 (459)
                      +.+|||.++ +|+|+||+++   +++..+.+    .......+.+.+.+++.++.   .+++++++       +++.+ .
T Consensus       262 i~t~gK~l~-~G~pigav~~---~~~i~~~~----~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~~-------~~~~~-~  325 (421)
T PRK09792        262 LMTMAKSLA-GGMPLSGVVG---NANIMDAP----APGGLGGTYAGNPLAVAAAHAVLNIIDKESL-------CERAN-Q  325 (421)
T ss_pred             EEEeehhhc-CCCceEEEEE---cHHHHhcc----CCCCcCCCCCCCHHHHHHHHHHHHHHHhhhH-------HHHHH-H
Confidence            358999999 8999999866   77744333    22112223345556666443   33433322       23333 2


Q ss_pred             HHHHHHHHHHHHhhccCCCCCcccccCCc-ceeeecCCC------------HHHHHHHHhcccEEEcCCC------cEEE
Q 012647          376 IKNVRQKLFDSLSAKDKSGKDWSFILRQI-GMFSFTGLN------------KAQSDNMTNKWHVYMTKDG------RISL  436 (459)
Q Consensus       376 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~-g~f~~~~l~------------~~~~~~ll~~~gI~v~~gg------Ris~  436 (459)
                      +.++.+...+.|.++++     .+....| |+++|+.+.            ..+.+.+++ +||.+.+.|      |+.+
T Consensus       326 ~g~~l~~~l~~l~~~~p-----~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~-~Gv~i~~~g~~~~~irl~P  399 (421)
T PRK09792        326 LGQRLKNTLIDAKESVP-----AIAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALA-QGLLLLTCGAYGNVIRFLY  399 (421)
T ss_pred             HHHHHHHHHHHHHHhCC-----CcceecccceEEEEEecCCccCCcchHHHHHHHHHHHH-CCcEEeecCCCCCEEEEeC
Confidence            22222222223331343     1234455 778776541            123445555 599986532      7776


Q ss_pred             cc-CChhhHHHHHHHHHHHHh
Q 012647          437 AG-LSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       437 ~~-~~~e~i~~~~~~l~~~~~  456 (459)
                      +. .+++++++++++|.++++
T Consensus       400 ~l~i~~~ei~~~~~~l~~~l~  420 (421)
T PRK09792        400 PLTIPDAQFDAAMKILQDALS  420 (421)
T ss_pred             CCcCCHHHHHHHHHHHHHHHh
Confidence            65 599999999999999875

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.87  E-value=7.8e-20  Score=181.21  Aligned_cols=217  Identities=14%  Similarity=0.096  Sum_probs=148.4

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcc----hHHHhhhCCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGN----HKNIFNDARV  199 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~----~~~~~~~~G~  199 (459)
                      +.....+|++++|++....        ..++  +++|+.++.++  +...+.+||+|+++.|.|..    +...+...|+
T Consensus        57 ~~p~~~~le~~lA~l~g~~--------~av~--~~sG~~Ai~~~--l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~  124 (391)
T TIGR01328        57 GNPTVSNLEGRIAFLEGTE--------AAVA--TSSGMGAIAAT--LLTILKAGDHLISDECLYGCTFALLEHALTKFGI  124 (391)
T ss_pred             CCchHHHHHHHHHHHhCCC--------cEEE--ECCHHHHHHHH--HHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCe
Confidence            4455678999999997542        3455  78888998887  44557899999999998764    3444566898


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~  279 (459)
                      +++.++.+       |++.+++++++   +++++++++|+||||.+.   ++++|+++|+++|+++|+|++|....... 
T Consensus       125 ~~~~vd~~-------d~e~l~~~i~~---~tklV~le~p~Np~G~v~---dl~~I~~la~~~gi~livD~a~a~~~~~~-  190 (391)
T TIGR01328       125 QVDFINMA-------IPEEVKAHIKD---NTKIVYFETPANPTMKLI---DMERVCRDAHSQGVKVIVDNTFATPMLTN-  190 (391)
T ss_pred             EEEEECCC-------CHHHHHHhhcc---CCeEEEEECCCCCCCccc---CHHHHHHHHHHcCCEEEEECCCchhccCC-
Confidence            88888762       78999998875   788999999999999994   57789999999999999999987543221 


Q ss_pred             CCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCCh
Q 012647          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNP  359 (459)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~  359 (459)
                           .+    .. ...+++.|+||.++.+|.++|++  ++.+++.++++.......  ......+...+.++...|+. 
T Consensus       191 -----~~----~~-g~Divv~S~sK~lgg~g~~~gG~--v~~~~~li~~l~~~~~~~--~~g~~l~~~~a~l~l~~L~t-  255 (391)
T TIGR01328       191 -----PV----AL-GVDVVVHSATKYIGGHGDVVAGL--ICGKAELLQQIRMVGIKD--MTGSVISPFDAWLILRGLKT-  255 (391)
T ss_pred             -----ch----hc-CCCEEEccccccccCCCCceEEE--EEcCHHHHHHHHHHHHHh--CCCCCCCcHHHHHHHhCcCc-
Confidence                 11    11 24588899999999999887554  344777665554322111  11112233333333322322 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          360 ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                               +....++..++.+.+.+.|+ +.
T Consensus       256 ---------l~~r~~~~~~na~~la~~L~-~~  277 (391)
T TIGR01328       256 ---------LNIRMKRHSENAMKVAEYLK-SH  277 (391)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHH-hC
Confidence                     33445666667777777777 54

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.87  E-value=6.1e-20  Score=184.41  Aligned_cols=338  Identities=14%  Similarity=0.078  Sum_probs=210.2

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...+|+..|.+-...|..  +|.|.+++.+.++... ..|.+..+..+|.+.+++....       .+.+.+  +++|+
T Consensus        49 G~~~lD~~~g~~~~~lGh~--~p~i~~a~~~~~~~~~-~~~~~~~~~~~la~~L~~~~~~-------~~~v~~--~~sGs  116 (426)
T PRK00062         49 GNEYIDYVGSWGPMILGHA--HPEVVEAVIEAAEKGL-SFGAPTELEVELAELVIELVPS-------IEMVRM--VNSGT  116 (426)
T ss_pred             CCEEEEcccchhhhhcCCC--CHHHHHHHHHHHHhCC-cCCCCCHHHHHHHHHHHHhCCC-------CCEEEE--ecCHH
Confidence            4578999988763333443  7899999998887643 4455667777888888877421       357888  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhC-C------------CCeeeeeeecCCCCCCCHHHHHHHHHcCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA-R------------VPWSEYRYYDPKTVGLDFEGMIADIKAAPG  228 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-G------------~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~  228 (459)
                      +|++.+.++...+..+++|+..+++|.++...+... |            .....++.....-.-.|++.+++.+...++
T Consensus       117 eA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~  196 (426)
T PRK00062        117 EATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYGD  196 (426)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHhCCC
Confidence            999999887766656789999999999875322211 1            100001000000001378899888865344


Q ss_pred             CcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc
Q 012647          229 GSFILLHGCAHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (459)
Q Consensus       229 ~~~~ii~~~p~NPTG~~~s-~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (459)
                      +..++++.....-+|.+.+ ++.+++|.++|++||+++|+||+|.++..+.    .... ...+..+++   .+|||.++
T Consensus       197 ~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~----~~~~-~~~~~~pDi---~~~gK~l~  268 (426)
T PRK00062        197 EIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVAL----GGAQ-GYYGVTPDL---TTLGKIIG  268 (426)
T ss_pred             cEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCC----ccHH-HHhCCCcch---HhhhhHhh
Confidence            5666666644445887775 8889999999999999999999998885431    1122 112222332   48999999


Q ss_pred             cCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHh---CChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          308 LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVV---GNPALFDEWKAEMEMMAGRIKNVRQKLF  384 (459)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L---~~~~~~~~~~~~~~~~~~~~~~~~~~l~  384 (459)
                       .||++|++++   +++..+.+... .......+.+.+.+++.++...|   ++.++       .++.++..+..++.|.
T Consensus       269 -~G~p~ga~~~---~~~i~~~~~~~-~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~-------~~~~~~~~~~~~~~l~  336 (426)
T PRK00062        269 -GGLPVGAFGG---RREIMEQLAPL-GPVYQAGTLSGNPLAMAAGLATLKLLKEPGF-------YEELEALTKRLAEGLK  336 (426)
T ss_pred             -CCCcceeeeE---HHHHHHhhccC-CCceecccCcCCHHHHHHHHHHHHHHhcchH-------HHHHHHHHHHHHHHHH
Confidence             8999999865   77744443211 11111222244455555554443   22211       2344444444455555


Q ss_pred             HHHhhccCCCCCccc-ccCCcceeee-cCC------------C----HHHHHHHHhcccEEEcCCC----cEEEccCChh
Q 012647          385 DSLSAKDKSGKDWSF-ILRQIGMFSF-TGL------------N----KAQSDNMTNKWHVYMTKDG----RISLAGLSLA  442 (459)
Q Consensus       385 ~~L~~~~g~~~~~~~-~~~~~g~f~~-~~l------------~----~~~~~~ll~~~gI~v~~gg----Ris~~~~~~e  442 (459)
                      +.++ +.+.    .. +...|.++.+ +..            +    ..+...+++ +||.+.+.+    ++++.. +++
T Consensus       337 ~~~~-~~~~----~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~-~Gv~v~~~~~~~~~~~~~~-t~~  409 (426)
T PRK00062        337 EAAK-KAGI----PLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLD-EGVYLAPSQFEAGFVSAAH-TDE  409 (426)
T ss_pred             HHHH-HcCC----ceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHH-CCeEeecCCcCceeeeccC-CHH
Confidence            4444 4542    22 3345655532 111            1    233455555 699998865    777544 999


Q ss_pred             hHHHHHHHHHHHHhhc
Q 012647          443 KCEYLADAIIDSYHNV  458 (459)
Q Consensus       443 ~i~~~~~~l~~~~~~~  458 (459)
                      ++++++++|.++++++
T Consensus       410 ei~~~~~~l~~~l~~~  425 (426)
T PRK00062        410 DIEKTLEAARKAFAAL  425 (426)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999999875

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.87  E-value=1.5e-19  Score=173.35  Aligned_cols=317  Identities=15%  Similarity=0.081  Sum_probs=212.5

Q ss_pred             CCccCcHHHHHHHHHHhhcCCCCCCCCC--cccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhC
Q 012647           98 LQPYVLDVVKKAENLMLERGENKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF  175 (459)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~~--~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~  175 (459)
                      ++.++++.|+++|..-.-    .++.|.  .-+.++++.+...+....     .+-+++  +.+||.+++.+  +.+.+.
T Consensus        12 GP~~v~~~V~~am~~~~~----~h~s~~F~~~~~~~~~~L~~v~~t~~-----~~~~ll--~gsGt~amEAa--v~sl~~   78 (383)
T COG0075          12 GPVPVPPRVLLAMARPMV----GHRSPDFVGIMKEVLEKLRKVFGTEN-----GDVVLL--SGSGTLAMEAA--VASLVE   78 (383)
T ss_pred             CCCCCCHHHHHHhcCCCC----CCCCHHHHHHHHHHHHHHHHHhcCCC-----CcEEEE--cCCcHHHHHHH--HHhccC
Confidence            445568999988876432    233331  122344444444433221     133444  78889999998  666678


Q ss_pred             CCCEEEEcCCCCcc--hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHH
Q 012647          176 PGAKVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEK  253 (459)
Q Consensus       176 ~gd~Vlv~~p~y~~--~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~  253 (459)
                      |||+|++..-+.++  +..+++.+|++++.+..  +++..+|++++++++++.+ ...++.+.+.-.+||+.   .++++
T Consensus        79 pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~--~wg~~v~p~~v~~~L~~~~-~~~~V~~vH~ETSTGvl---npl~~  152 (383)
T COG0075          79 PGDKVLVVVNGKFGERFAEIAERYGAEVVVLEV--EWGEAVDPEEVEEALDKDP-DIKAVAVVHNETSTGVL---NPLKE  152 (383)
T ss_pred             CCCeEEEEeCChHHHHHHHHHHHhCCceEEEeC--CCCCCCCHHHHHHHHhcCC-CccEEEEEeccCccccc---CcHHH
Confidence            99999999988764  57889999999999988  6778999999999999644 44456666677778988   79999


Q ss_pred             HHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc-ccCCCCcceEEEEeCChhHHHHHHHH
Q 012647          254 IADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARVKSQ  332 (459)
Q Consensus       254 i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~  332 (459)
                      |+++|++||.++|+|.+ ..++-.+.+.+.|         +-++++.+--|.+ ++||  +|++.+   +++.++.+...
T Consensus       153 I~~~~k~~g~l~iVDaV-sS~Gg~~~~vd~w---------giDv~itgSQK~l~~PPG--la~v~~---S~~a~e~~~~~  217 (383)
T COG0075         153 IAKAAKEHGALLIVDAV-SSLGGEPLKVDEW---------GIDVAITGSQKALGAPPG--LAFVAV---SERALEAIEER  217 (383)
T ss_pred             HHHHHHHcCCEEEEEec-ccCCCcccchhhc---------CccEEEecCchhccCCCc--cceeEE---CHHHHHHHhcC
Confidence            99999999999999999 7777554433333         4455555556666 5677  687766   77755555432


Q ss_pred             ------------HHhhc--cccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcc
Q 012647          333 ------------LKRLA--RPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWS  398 (459)
Q Consensus       333 ------------~~~~~--~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~  398 (459)
                                  .....  ..+..++|.....+....|+.-     -.+.++...++++++.+++++.++ .+|+    +
T Consensus       218 ~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i-----~~EGle~r~~RH~~~~~a~r~~~~-alGl----~  287 (383)
T COG0075         218 KHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLI-----LEEGLEARIARHRRLAEALRAGLE-ALGL----E  287 (383)
T ss_pred             CCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHHHHHH-HcCC----c
Confidence                        11111  1222234443333333333211     135578999999999999999999 9985    4


Q ss_pred             cccCC-------cceeeecCCCHH-HHHHHHhcccEEEcCC-----C---cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          399 FILRQ-------IGMFSFTGLNKA-QSDNMTNKWHVYMTKD-----G---RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       399 ~~~~~-------~g~f~~~~l~~~-~~~~ll~~~gI~v~~g-----g---Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                      .....       ..+++-.+++.+ ....+++++||.+.+|     |   ||+..+ .+.+++...+.+|..++.++
T Consensus       288 ~~~~~~~~s~tvta~~~P~g~~~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~  364 (383)
T COG0075         288 LFADPERRSPTVTAIKVPEGVDDKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALREL  364 (383)
T ss_pred             cccCcccCCCceEEEECCCCCCcHHHHHHHHHhCCEEecccccccCccEEEEecCccCCHHHHHHHHHHHHHHHHHc
Confidence            44311       111222245543 3447888889999887     2   997544 48899999999999998865

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.87  E-value=8e-20  Score=181.53  Aligned_cols=215  Identities=13%  Similarity=0.097  Sum_probs=149.7

Q ss_pred             CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcc----hHHHhhhCCCC
Q 012647          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGN----HKNIFNDARVP  200 (459)
Q Consensus       125 ~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~----~~~~~~~~G~~  200 (459)
                      .....+|++.+|++...       ++.++   +++|++++.++  +...+.+||+|+++.|+|..    +...++..|.+
T Consensus        59 ~p~~~~Le~~lA~l~g~-------~~~v~---~~sG~~Ai~~~--l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~  126 (405)
T PRK08776         59 NPTRDLLGEALAELEGG-------AGGVI---TATGMGAINLV--LNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFA  126 (405)
T ss_pred             ChHHHHHHHHHHHHhCC-------CceEE---EcCHHHHHHHH--HHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcE
Confidence            33457889999988543       34454   57778999987  44457899999999999986    44455566777


Q ss_pred             eeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCC
Q 012647          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (459)
Q Consensus       201 v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~  280 (459)
                      ++.++.       .|++.+++++++   +++++++++|+||||.+   .++++|+++|+++|+++|+|++|......   
T Consensus       127 v~~v~~-------~d~~~l~~~i~~---~tklV~l~~P~NPtG~v---~dl~~I~~la~~~gi~vIvD~a~a~~~~~---  190 (405)
T PRK08776        127 LITADL-------TDPRSLADALAQ---SPKLVLIETPSNPLLRI---TDLRFVIEAAHKVGALTVVDNTFLSPALQ---  190 (405)
T ss_pred             EEEECC-------CCHHHHHHhcCc---CCeEEEEECCCCCCCcc---CCHHHHHHHHHHcCCEEEEECCCcccccC---
Confidence            777754       378999988875   68889999999999999   67889999999999999999998753211   


Q ss_pred             CChhHHHHHHhcCCeEEEEEcCCcCcccC-CCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCCh
Q 012647          281 NDASSVRLFATRGMELLVAQSYSKNLGLY-AERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNP  359 (459)
Q Consensus       281 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~  359 (459)
                       .  .+    . ....+++.|.+|.++.+ +...|++  ++.+++..+++.....    ....+.+.+.+.++...++  
T Consensus       191 -~--pl----~-~gaDivv~S~tK~l~g~~~~~~G~v--v~~~~~l~~~l~~~~~----~~g~~~s~~~a~l~~~gl~--  254 (405)
T PRK08776        191 -K--PL----E-FGADLVLHSTTKYINGHSDVVGGAV--VARDAELHQQLVWWAN----ALGLTGSPFDAFLTLRGLR--  254 (405)
T ss_pred             -C--cc----c-ccCCEEEecCceeecCCCCceEEEE--EeCCHHHHHHHHHHHH----hcCCCCCHHHHHHHHhhhC--
Confidence             0  11    1 12358889999999755 4667776  4556665554443222    1222445555554443322  


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          360 ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                              .++...++..++...+.+.|+ +.+
T Consensus       255 --------tl~~r~~~~~~na~~la~~L~-~~p  278 (405)
T PRK08776        255 --------TLDARLRVHQENADAIAALLD-GHA  278 (405)
T ss_pred             --------cHHHHHHHHHHHHHHHHHHHH-cCC
Confidence                    245667777778888888887 553

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.87  E-value=7e-20  Score=181.16  Aligned_cols=327  Identities=11%  Similarity=0.030  Sum_probs=190.8

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhc-----CCCCCCC----CCcccHHHHHHHHHHHhcCCCCccccCceE
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-----GENKEYL----PIEGLAAFNKVTAELLFGADNSVLKEQRVA  153 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-----~~~~~Y~----~~~g~~~lr~aia~~l~~~~~~~~~~~~i~  153 (459)
                      ..+++|+...|++....|++.+.+.+++.+....     .......    ...-+.++++.+|++++.       ++.++
T Consensus         4 ~~~~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~-------~~~l~   76 (370)
T PRK05937          4 SLSIDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGA-------PEAFI   76 (370)
T ss_pred             CceEEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCC-------CeEEE
Confidence            4689999999999888777677788877776421     0011111    334568899999999755       23365


Q ss_pred             EeecccchhHHHHHHHHHHHh-CCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCC
Q 012647          154 TVQGLSGTGSLRLAAALIERY-FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGG  229 (459)
Q Consensus       154 ~~~t~ggt~a~~l~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~  229 (459)
                      +  ++|. .++..   +...+ .+||.|++..-.+......++......+.++       ..|++.+++.++..   ++.
T Consensus        77 ~--~sG~-~a~~~---~~~~~~~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~-------~~d~~~l~~~l~~~~~~~~~  143 (370)
T PRK05937         77 V--PSGY-MANLG---LCAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSFR-------HNDLDHLESLLESCRQRSFG  143 (370)
T ss_pred             E--CChH-HHHHH---HHHHhCCCCCEEEEEhhhhHHHHHHHHHcCCceEEec-------CCCHHHHHHHHHhhhccCCC
Confidence            5  5555 44432   23334 4777777766666555555554433333332       25889999988742   134


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccC
Q 012647          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (459)
Q Consensus       230 ~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  309 (459)
                      ++++++++++|+||.+.   ++++|.++|+++|+++++||+|.....+ .+..  .........+.++.+.||||.+|+.
T Consensus       144 ~~~v~v~~v~s~~G~i~---pl~eI~~l~~~~~~~livDea~~~G~~g-~~g~--g~~~~~~~~~~~~~~~tlsK~~g~~  217 (370)
T PRK05937        144 RIFIFVCSVYSFKGTLA---PLEQIIALSKKYHAHLIVDEAHAMGIFG-DDGK--GFCHSLGYENFYAVLVTYSKALGSM  217 (370)
T ss_pred             cEEEEEecCCCCCCCcc---CHHHHHHHHHHcCCEEEEECCccccccC-CCCC--chHHhhCCCCCcEEEEechhhhhcC
Confidence            66777899999999994   5778999999999999999997643222 1111  1111111112235678999999987


Q ss_pred             CCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012647          310 AERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA  389 (459)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  389 (459)
                      |  .|.+ .   .++..+.+.......... . +.+..+..++...+   ++.   .+.-+..+++++++++++.+.|. 
T Consensus       218 G--~~vl-~---~~~~~~~~~~~~~~~~~s-~-~~~~~~~~a~~aal---~~l---~~~~~~~~~~l~~l~~~l~~~l~-  282 (370)
T PRK05937        218 G--AALL-S---SSEVKQDLMLNSPPLRYS-T-GLPPHLLISIQVAY---DFL---SQEGELARKQLFRLKEYFAQKFS-  282 (370)
T ss_pred             c--eEEE-c---CHHHHHHHHHhCCCCeec-C-CCCHHHHHHHHHHH---HHH---HhCcHHHHHHHHHHHHHHHHhcC-
Confidence            7  3332 2   444333333221111111 1 22233222222222   111   01113445677777788877776 


Q ss_pred             ccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcC-----CC--cEEEccC-ChhhHHHHHHHHHHHHhhc
Q 012647          390 KDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTK-----DG--RISLAGL-SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       390 ~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~-----gg--Ris~~~~-~~e~i~~~~~~l~~~~~~~  458 (459)
                      ..+.    ...    ..+.+.+...+.+.+.++++||.+..     .+  |||++.. ++||+++++++|+++++++
T Consensus       283 ~~~~----~~~----~~i~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~t~edid~l~~~L~~~~~~~  351 (370)
T PRK05937        283 SAAP----GCV----QPIFLPGISEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFNTEDEVDILVSVLATYLEKY  351 (370)
T ss_pred             CCCC----CCE----EEEEeCChhHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHh
Confidence            4320    111    11222334444455555557998863     13  9998754 8999999999999988754

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.87  E-value=1.8e-19  Score=178.47  Aligned_cols=192  Identities=17%  Similarity=0.077  Sum_probs=141.6

Q ss_pred             CcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH-hCCCCEE
Q 012647          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKV  180 (459)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~-~~~gd~V  180 (459)
                      +.+.-.+++.+.+..+. .  .+.....+|++++++++..        +++++  ++|||+|+.++  +... +.+||+|
T Consensus        12 ~~~~e~~~~~~~l~~~~-~--~~g~~~~~le~~la~~~g~--------~~~v~--~~sgt~al~la--l~al~~~~Gd~V   76 (379)
T PRK11658         12 MGDEELAAVKEVLRSGW-I--TTGPKNQALEQAFCQLTGN--------QHAIA--VSSATAGMHIT--LMALGIGPGDEV   76 (379)
T ss_pred             CCHHHHHHHHHHHHcCC-c--cCCHhHHHHHHHHHHHhCC--------CeEEE--ECCHHHHHHHH--HHHcCCCCCCEE
Confidence            45666778888776543 2  2344578999999999754        34666  89999999998  4444 5699999


Q ss_pred             EEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Q 012647          181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE  260 (459)
Q Consensus       181 lv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~  260 (459)
                      ++++|+|..+...+...|++++.++++ .+++.+|++.+++++++   ++++++   |+||+|..   .++++|.++|++
T Consensus        77 iv~~~~~~~~~~~~~~~G~~~v~vd~~-~~~~~~d~~~l~~~i~~---~tkav~---~~~~~G~~---~d~~~i~~~a~~  146 (379)
T PRK11658         77 ITPSLTWVSTLNMIVLLGATPVMVDVD-RDTLMVTPEAIEAAITP---RTKAII---PVHYAGAP---ADLDAIRAIGER  146 (379)
T ss_pred             EECCCcHHHHHHHHHHcCCEEEEEecC-CCcCCcCHHHHHHhccc---CCeEEE---EeCCCCCc---CCHHHHHHHHHH
Confidence            999999999999999999999999985 45677999999999975   677776   67889998   667889999999


Q ss_pred             cCCeeEEeccCCC-CCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHH
Q 012647          261 KNHIPFFDVAYQG-FASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKS  331 (459)
Q Consensus       261 ~~~~ii~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~  331 (459)
                      +|+++|+|++|.. ..+.+.     .    +.....  .+.||++...+++.+-|++  ++.++++.+++..
T Consensus       147 ~gi~vi~D~a~a~g~~~~~~-----~----~g~~g~--~~~Sf~~~K~l~~g~GG~v--~~~~~~~~~~~~~  205 (379)
T PRK11658        147 YGIPVIEDAAHAVGTYYKGR-----H----IGARGT--AIFSFHAIKNITCAEGGLV--VTDDDELADRLRS  205 (379)
T ss_pred             cCCeEEEECCCccCCeECCe-----e----cCCCCC--EEEeCCCCCcCcccCceEE--EECCHHHHHHHHH
Confidence            9999999999653 222210     0    112222  3456665555566677776  4566776666554

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.87  E-value=8.9e-20  Score=180.21  Aligned_cols=216  Identities=14%  Similarity=0.097  Sum_probs=153.1

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh----hCCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARV  199 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~G~  199 (459)
                      +......|++++|++...        +++++  ++||++++.++  +...+.+||+|++++|+|+.....+.    ..|.
T Consensus        50 ~~pt~~~L~~~lA~l~g~--------~~~i~--~~sg~~Ai~~~--l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi  117 (386)
T PRK08045         50 GNPTRDVVQRALAELEGG--------AGAVL--TNTGMSAIHLV--TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY  117 (386)
T ss_pred             CCccHHHHHHHHHHHhCC--------CeEEE--ECCHHHHHHHH--HHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCe
Confidence            555678999999999542        34777  89999999998  44557899999999999986443333    2333


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~  279 (459)
                      ++..++       ..|++.+++++++   +++++++++|+||||.+++   +++|.++|+++|+++|+|++|....... 
T Consensus       118 ~v~~vd-------~~d~e~l~~~l~~---~tklV~l~sP~NPtG~v~d---i~~I~~ia~~~g~~vivDeay~~~~~~~-  183 (386)
T PRK08045        118 RVLFVD-------QGDEQALRAALAE---KPKLVLVESPSNPLLRVVD---IAKICHLAREAGAVSVVDNTFLSPALQN-  183 (386)
T ss_pred             EEEEeC-------CCCHHHHHHhccc---CCeEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCccccCC-
Confidence            444432       2588999998875   6788899999999999965   6678888999999999999987654311 


Q ss_pred             CCChhHHHHHHhcCCeEEEEEcCCcCcc-cCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCC
Q 012647          280 DNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN  358 (459)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  358 (459)
                           .+    .. ...+++.|++|.++ ..+.+.|++  ++.+++..+++..    .......+.+...+.++...|+.
T Consensus       184 -----pl----~~-gaDivv~S~tK~l~G~~d~~~G~v--i~~~~~~~~~l~~----~~~~~g~~~~p~~~~l~~rgl~t  247 (386)
T PRK08045        184 -----PL----AL-GADLVLHSCTKYLNGHSDVVAGVV--IAKDPDVVTELAW----WANNIGVTGGAFDSYLLLRGLRT  247 (386)
T ss_pred             -----ch----hh-CCCEEEeecceeccCCCCceeEEE--EeCcHHHHHHHHH----HHHhcCCCCCHHHHHHHHhhhcc
Confidence                 11    11 22488999999985 566778987  4556664444432    22233335666666666655543


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                                +....++..+++..+.+.|+ +.+
T Consensus       248 ----------l~~R~~~~~~na~~la~~L~-~~p  270 (386)
T PRK08045        248 ----------LVPRMELAQRNAQAIVKYLQ-TQP  270 (386)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHH-cCC
Confidence                      45667777788888888887 653

>PLN02624 ornithine-delta-aminotransferase

Probab=99.87  E-value=1.6e-19  Score=183.16  Aligned_cols=333  Identities=12%  Similarity=0.066  Sum_probs=203.0

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      +...+||..|.--...|+.  +|.|.+++.+.++... ...+.......+|.+.++++. .       .+.+++  +++|
T Consensus        74 G~~ylD~~sg~~~~~~Gh~--~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~L~~~~-~-------~~~~~f--~~SG  141 (474)
T PLN02624         74 GKKYLDFLSAYSAVNQGHC--HPKIIKALTEQAEKLTLSSRAFYNDKFPEFAEYLTSMF-G-------YDMVLP--MNTG  141 (474)
T ss_pred             CCEEEEcccchhcccCCCC--CHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHhhc-C-------CCeEEE--eCCh
Confidence            3568888877432222332  7899999988886421 111123344566777777763 1       257888  8999


Q ss_pred             hhHHHHHHHHHHHhC------C-CC-EEEEcCCCCcchHHHhhhCCC-------------CeeeeeeecCCCCCCCHHHH
Q 012647          161 TGSLRLAAALIERYF------P-GA-KVLISSPTWGNHKNIFNDARV-------------PWSEYRYYDPKTVGLDFEGM  219 (459)
Q Consensus       161 t~a~~l~~~~~~~~~------~-gd-~Vlv~~p~y~~~~~~~~~~G~-------------~v~~v~~~~~~~~~~d~e~l  219 (459)
                      ++|++.+.++...+.      + ++ +|+...-+|.+..........             .+..+|.       .|++.+
T Consensus       142 seA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l  214 (474)
T PLN02624        142 AEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF-------GDLDAL  214 (474)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC-------CCHHHH
Confidence            999999988776541      1 33 577777777654222111111             1122222       278999


Q ss_pred             HHHHHcCCCCcEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012647          220 IADIKAAPGGSFILLHGCAHNPTGIDPTPEQ-WEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (459)
Q Consensus       220 ~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~-l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (459)
                      ++.++..+++..++++.+++|++|.++++++ +++|.++|++||+++|+||+|.+++..+   ..+... .....++++ 
T Consensus       215 ~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG---~~~a~~-~~~i~pDiv-  289 (474)
T PLN02624        215 EKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTG---KMLACD-WEEVRPDVV-  289 (474)
T ss_pred             HHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCc---chhhHH-hcCCCCCEE-
Confidence            9988765557888899999999999887775 9999999999999999999998776432   122211 112223333 


Q ss_pred             EEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012647          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  378 (459)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  378 (459)
                        ++||.+|.+++++|++++   +++    +...+.......+.+.+.+++.++...|+.-  . +     ....++..+
T Consensus       290 --~lsK~lggG~~pigav~~---~~~----i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l--~-~-----~~l~~~~~~  352 (474)
T PLN02624        290 --ILGKALGGGVIPVSAVLA---DKD----VMLCIKPGEHGSTFGGNPLASAVAMAALQVV--Q-D-----EKLAERSAK  352 (474)
T ss_pred             --EecccccCCCCcceeeee---cHH----HHhHhccCCcCCCCCCCHHHHHHHHHHHHHH--H-h-----chHHHHHHH
Confidence              468999977799999966   666    3333332222233345556666665544311  0 0     122334444


Q ss_pred             HHHHHHHHHhhccC--CCCCcccccCCcceee-ecCCC-------HHHHHHHHhcccEEEcCCC----cEEEc-cCChhh
Q 012647          379 VRQKLFDSLSAKDK--SGKDWSFILRQIGMFS-FTGLN-------KAQSDNMTNKWHVYMTKDG----RISLA-GLSLAK  443 (459)
Q Consensus       379 ~~~~l~~~L~~~~g--~~~~~~~~~~~~g~f~-~~~l~-------~~~~~~ll~~~gI~v~~gg----Ris~~-~~~~e~  443 (459)
                      +.+.+.+.|+ ++.  ++..+..+.+.|.++. +++.+       .++++.|.+ +||.+.|++    ||+.. ..++++
T Consensus       353 ~~~~l~~~L~-~l~~~~~~~i~~vrg~G~~~~i~l~~~~~~~~~a~~~~~~L~e-~GV~v~p~~~~~lR~~p~l~~t~e~  430 (474)
T PLN02624        353 LGQELRDQLQ-KIQKQFPKLIKEVRGRGLLNAVVLNSPKLGPVSAYDVCLKLKE-RGLLAKPTHDTIIRLAPPLSISEDE  430 (474)
T ss_pred             HHHHHHHHHH-HHHHhCCCceEEEEeeEEEEEEEecCCCcChHHHHHHHHHHHh-CCeEEecCCCCEEEEECCccCCHHH
Confidence            4455555554 431  1111233445555553 33321       234556555 699999875    77742 238999


Q ss_pred             HHHHHHHHHHHHhh
Q 012647          444 CEYLADAIIDSYHN  457 (459)
Q Consensus       444 i~~~~~~l~~~~~~  457 (459)
                      |++++++|++++++
T Consensus       431 id~~l~~L~~~l~~  444 (474)
T PLN02624        431 LQECSKALSDVLEH  444 (474)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998864

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.87  E-value=2.3e-19  Score=181.53  Aligned_cols=339  Identities=13%  Similarity=0.080  Sum_probs=194.4

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCC--CCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE--YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~--Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...||+..|..-..-|+.  +|.|.+++.+.++......  +....-..++-+.+++.+....     .+.+.+  +++
T Consensus        53 G~~ylD~~~g~~~~~lGh~--~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~-----~~~v~f--~~s  123 (451)
T PRK06918         53 GNQYIDFAGAIGTINVGHS--HPKVKEALHKQVDQYIHTGFNVMMYEPYIELAEKLAALAPGSF-----DKKVLF--LNS  123 (451)
T ss_pred             CCEEEEcCCchhhcCCCCC--CHHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHhCCCCC-----CCEEEE--cCC
Confidence            3567888877642233443  7889999988886531111  1112223344455554432110     157888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhC-CC-------------CeeeeeeecC--CCCCCC--------
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA-RV-------------PWSEYRYYDP--KTVGLD--------  215 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-G~-------------~v~~v~~~~~--~~~~~d--------  215 (459)
                      |++|++.+.++.+.+....+|+....+|.+........ |-             .+..+|....  ...++.        
T Consensus       124 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (451)
T PRK06918        124 GAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFM  203 (451)
T ss_pred             cHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHH
Confidence            99999999988877665578999998887664332221 10             1222332100  001111        


Q ss_pred             HHHHHHHHHc--CCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc
Q 012647          216 FEGMIADIKA--APGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR  292 (459)
Q Consensus       216 ~e~l~~~i~~--~~~~~~~ii~~~p~NPTG~~~-s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~  292 (459)
                      ++.+++.+..  .++....+|+...+.-.|.++ +.+.+++|.++|++||+++|+||+|.+++..+   ..++...+ +.
T Consensus       204 ~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g---~~~a~~~~-~v  279 (451)
T PRK06918        204 IEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTG---KYFAIEHF-DV  279 (451)
T ss_pred             HHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccC---ceehhHhc-CC
Confidence            1233333321  123444555433333346644 55669999999999999999999999997643   22333222 22


Q ss_pred             CCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHh---CChhhHHHHHHHH
Q 012647          293 GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVV---GNPALFDEWKAEM  369 (459)
Q Consensus       293 ~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L---~~~~~~~~~~~~~  369 (459)
                      .++   +.||||.++ +|+|+||+++   +++..    +.+.......+.+.+.+++.++...|   +++.+        
T Consensus       280 ~pD---i~t~sK~l~-~G~pig~v~~---~~~i~----~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~~--------  340 (451)
T PRK06918        280 VPD---LITVSKSLG-AGVPISGVIG---RKEIM----DESAPGELGGTYAGSPLGCAAALAVLDIIEKENL--------  340 (451)
T ss_pred             CCC---EEeeehhhc-CCCccEEEEE---cHHHH----hccCCCCcCcCCCcCHHHHHHHHHHHHHHHHCCH--------
Confidence            234   348999999 8999999976   77743    33332222334456667777754444   22222        


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcc--CCCCCcccccCCcceeeecCC--------CHHH----HHHHHhcccEEEcCCC---
Q 012647          370 EMMAGRIKNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGL--------NKAQ----SDNMTNKWHVYMTKDG---  432 (459)
Q Consensus       370 ~~~~~~~~~~~~~l~~~L~~~~--g~~~~~~~~~~~~g~f~~~~l--------~~~~----~~~ll~~~gI~v~~gg---  432 (459)
                         .++.++..+++.+.|+ ++  +.| .+..+...|+++.|.-.        +.+.    .+.+ .++||.+.|++   
T Consensus       341 ---~~~~~~~g~~l~~~l~-~l~~~~~-~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~Gvlv~~~~~~~  414 (451)
T PRK06918        341 ---NDRAIELGKVVMNRFE-EMKNKYN-CIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEA-NKRGLLLLSAGTYG  414 (451)
T ss_pred             ---HHHHHHHHHHHHHHHH-HHHhhCC-CceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHH-HHCCeEEeecCCCC
Confidence               2233333344444443 32  111 12234566777765321        2222    3333 44699999863   


Q ss_pred             ---cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          433 ---RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       433 ---Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                         ||+++. .+++++++++++|.++++++
T Consensus       415 ~~lrl~p~l~~t~~~id~~l~~l~~~l~~~  444 (451)
T PRK06918        415 NVIRVLMPLVITDEQLEEGLTIIEESLQAC  444 (451)
T ss_pred             CEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence               888764 58999999999999998753

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.87  E-value=2.3e-19  Score=179.75  Aligned_cols=340  Identities=14%  Similarity=0.078  Sum_probs=211.0

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCC--CCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y--~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...+|+..|..-..-+..  +|.|.+++.+.+++.....+  .+.....++-+.+++.....     ..+.+.+  +++
T Consensus        39 G~~ylD~~~g~~~~~lGh~--~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~-----~~~~~~f--~~s  109 (421)
T PRK06777         39 GREYIDFAAGIAVLNTGHR--HPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERINALAPID-----GPAKTAF--FTT  109 (421)
T ss_pred             CCEEEEcccCHHhhccCCC--CHHHHHHHHHHHhhcccccccccCChHHHHHHHHHHHhCCCC-----CCceEEE--eCC
Confidence            3567888777532222333  78899999888865321112  12333334555555443111     0357888  899


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhh-CCC-------------CeeeeeeecCCCCC----CCHHHHHH
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-ARV-------------PWSEYRYYDPKTVG----LDFEGMIA  221 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~G~-------------~v~~v~~~~~~~~~----~d~e~l~~  221 (459)
                      |++|++.+.++........+|+....+|.+....... .|.             .+..+|.. +...+    .+++.+++
T Consensus       110 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~l~~  188 (421)
T PRK06777        110 GAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYP-NELHGVSVEEALSSVER  188 (421)
T ss_pred             cHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCC-ccccCcCHHHHHHHHHH
Confidence            9999999988877665557899999888766433221 121             11222221 10111    13666777


Q ss_pred             HHHc--CCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012647          222 DIKA--APGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (459)
Q Consensus       222 ~i~~--~~~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (459)
                      .+..  .++....+++...+++.|. +++++.+++|.++|++||+++|+||+|.+++..+   ..+....+ +..++++ 
T Consensus       189 ~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g---~~~~~~~~-~~~pDiv-  263 (421)
T PRK06777        189 LFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTG---KLFAMEYY-DVKPDLI-  263 (421)
T ss_pred             HHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCC---chhhhhhc-CCCCCEE-
Confidence            7753  2345667777777888885 5889999999999999999999999999887543   22232222 2234433 


Q ss_pred             EEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012647          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  378 (459)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  378 (459)
                        ++||.++ +|+|+||+++   +++    +.+.+.......+.+.+.+++.++...|+..      ++  +...+++++
T Consensus       264 --~~sK~l~-~G~pigav~~---~~~----i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~------~~--~~l~~~~~~  325 (421)
T PRK06777        264 --TMAKSLG-GGMPISAVVG---RAE----VMDAPAPGGLGGTYAGNPLAVAAALAVLDVI------AE--EKLCQRALI  325 (421)
T ss_pred             --eeehhhc-CCCceEEEEE---cHH----HHhccCCCCCCCCCCcCHHHHHHHHHHHHHH------Hh--ccHHHHHHH
Confidence              7999999 9999999976   777    4333332222333356777777776666311      11  355677777


Q ss_pred             HHHHHHHHHhhccCCC-CCcccccCCcceeee-cCC------CHHHH----HHHHhcccEEEcCCC------cEEEc-cC
Q 012647          379 VRQKLFDSLSAKDKSG-KDWSFILRQIGMFSF-TGL------NKAQS----DNMTNKWHVYMTKDG------RISLA-GL  439 (459)
Q Consensus       379 ~~~~l~~~L~~~~g~~-~~~~~~~~~~g~f~~-~~l------~~~~~----~~ll~~~gI~v~~gg------Ris~~-~~  439 (459)
                      +.+++.+.|+ ++... +.+..+.+.|.+|.+ +..      +.++.    ..+++ +||.+.|++      ||+.. ..
T Consensus       326 ~g~~l~~~L~-~l~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~-~Gv~i~~~~~~g~~lr~~ppl~i  403 (421)
T PRK06777        326 LGAHLVEVLE-KAKASCPAIVDIRARGSMVAVEFNDPQTGKPSPEFTRQYQRQALE-EGLLLLSCGVHGNVIRFLYPLTI  403 (421)
T ss_pred             HHHHHHHHHH-HHHHhCCCeEEecCceEEEEEEEecCccCCccHHHHHHHHHHHHh-CCeEEeecCCCCCEEEEeCCCCC
Confidence            7778877777 54210 013345677777754 321      12232    33444 699999864      77764 24


Q ss_pred             ChhhHHHHHHHHHHHHh
Q 012647          440 SLAKCEYLADAIIDSYH  456 (459)
Q Consensus       440 ~~e~i~~~~~~l~~~~~  456 (459)
                      +++++++++++|.+++.
T Consensus       404 ~~~~i~~~~~~l~~~l~  420 (421)
T PRK06777        404 PDAQFSKALNILTRLLA  420 (421)
T ss_pred             CHHHHHHHHHHHHHHHh
Confidence            89999999999998874

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.86  E-value=2e-19  Score=178.23  Aligned_cols=215  Identities=15%  Similarity=0.114  Sum_probs=145.7

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh----hhCCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARV  199 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~G~  199 (459)
                      +.....+|++++|++....       ..++   +.+|++++.++  +...+.+||+|+++.|+|......+    ...|+
T Consensus        59 ~~p~~~~Le~~lA~~~g~~-------~~i~---~~sG~~Ai~~~--l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi  126 (388)
T PRK07811         59 GNPTRTALEEQLAALEGGA-------YGRA---FSSGMAATDCL--LRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGV  126 (388)
T ss_pred             CCccHHHHHHHHHHHhCCC-------ceEE---eCCHHHHHHHH--HHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCe
Confidence            5677899999999997543       2344   46778999998  4445789999999999998543332    23576


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~  279 (459)
                      +++.++.       .|++++++++++   ++++|++++|+||||.+   .++++|+++|+++|+++|+|++|....... 
T Consensus       127 ~~~~~d~-------~d~e~l~~~i~~---~tklV~ie~p~NPtg~~---~dl~~I~~la~~~gi~lIvD~a~a~~~~~~-  192 (388)
T PRK07811        127 EYTPVDL-------SDLDAVRAAITP---RTKLIWVETPTNPLLSI---TDIAALAELAHDAGAKVVVDNTFASPYLQQ-  192 (388)
T ss_pred             EEEEeCC-------CCHHHHHHhcCc---CCeEEEEECCCCCccee---cCHHHHHHHHHHcCCEEEEECCCCccccCC-
Confidence            6666543       489999999875   78899999999999988   888999999999999999999987654321 


Q ss_pred             CCChhHHHHHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCC
Q 012647          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN  358 (459)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  358 (459)
                           .+    . ....+++.|++|.++.+| .+.||++  ++++++.+++..    .........+...+.++...|+.
T Consensus       193 -----p~----~-~gaDivv~S~sK~l~g~~~~~gG~vv--~~~~~l~~~~~~----~~~~~g~~~s~~~a~l~~~~L~t  256 (388)
T PRK07811        193 -----PL----A-LGADVVVHSTTKYIGGHSDVVGGALV--TNDEELDEAFAF----LQNGAGAVPGPFDAYLTLRGLKT  256 (388)
T ss_pred             -----ch----h-hCCcEEEecCceeecCCCCcEEEEEE--ECCHHHHHHHHH----HHHhcCCCCCHHHHHHHHhccCc
Confidence                 11    1 123589999999998665 4568873  455664333322    11111212333333333333332


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                                +....++..++...+.+.|+ +.
T Consensus       257 ----------l~~R~~~~~~na~~la~~L~-~~  278 (388)
T PRK07811        257 ----------LAVRMDRHSENAEAVAEFLA-GH  278 (388)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHH-hC
Confidence                      34445555667777777777 55

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.86  E-value=2.8e-19  Score=176.92  Aligned_cols=216  Identities=16%  Similarity=0.152  Sum_probs=151.0

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcc----hHHHhhhCCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGN----HKNIFNDARV  199 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~----~~~~~~~~G~  199 (459)
                      +..-..+|++.++++...        +++++  +++|+.++.++  +...+.+||+|+++.+.|..    +...++..|+
T Consensus        52 ~~p~~~~le~~la~l~g~--------~~~~~--~~sG~~Ai~~a--l~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~  119 (380)
T TIGR01325        52 ANPTVAAFEERIAALEGA--------ERAVA--TATGMSAIQAA--LMTLLQAGDHVVASRSLFGSTVGFISEILPRFGI  119 (380)
T ss_pred             CCchHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCC
Confidence            344578999999998643        34666  89999999988  44457899999999988864    3445677899


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~  279 (459)
                      +++.++..       |++.+++++++   +++++++++|+||+|.+   .++++|.++|+++|+++|+|++|....... 
T Consensus       120 ~v~~v~~~-------d~~~l~~~i~~---~tklV~le~p~np~g~~---~dl~~I~~la~~~gi~livD~a~~~~~~~~-  185 (380)
T TIGR01325       120 EVSFVDPT-------DLNAWEAAVKP---NTKLVFVETPSNPLGEL---VDIAALAELAHAIGALLVVDNVFATPVLQQ-  185 (380)
T ss_pred             EEEEECCC-------CHHHHHHhcCC---CceEEEEECCCCCCCee---eCHHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence            98888762       68889888865   68899999999999999   568889999999999999999987543221 


Q ss_pred             CCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCCh
Q 012647          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNP  359 (459)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~  359 (459)
                           .+    . ...++++.|+||.++.+|.++|.++  ..+++..+.+...+..    .....+...+.+   ++..-
T Consensus       186 -----pl----~-~g~Divv~S~sK~l~g~g~~~gG~v--v~~~~~~~~l~~~~~~----~g~~~~p~~a~~---~l~~l  246 (380)
T TIGR01325       186 -----PL----K-LGADVVVYSATKHIDGQGRVMGGVI--AGSEELMAEVAVYLRH----TGPAMSPFNAWV---LLKGL  246 (380)
T ss_pred             -----ch----h-hCCCEEEeeccceecCCCCeEEEEE--EeCHHHHHHHHHHHHh----hCCCCCHHHHHH---HHhcc
Confidence                 11    1 1246888899999998898885542  2366655555443322    111222222222   22221


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          360 ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                             +.+....++..+++..+.+.|+ +.+
T Consensus       247 -------~tl~~r~~~~~~~a~~la~~L~-~~p  271 (380)
T TIGR01325       247 -------ETLSLRMQKQFDSALAIAEWLQ-AQP  271 (380)
T ss_pred             -------CcHHHHHHHHHHHHHHHHHHHH-cCC
Confidence                   2244556667778888888888 764

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.86  E-value=1.5e-19  Score=178.43  Aligned_cols=216  Identities=18%  Similarity=0.115  Sum_probs=152.6

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----hhhCCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARV  199 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~G~  199 (459)
                      +.....+|++.++++...        ++.++  +++|++|+.++  +...+.+||+|+++.+.|......    ++..|+
T Consensus        38 ~~p~~~~le~~la~l~g~--------~~a~~--~~sG~~Ai~~~--l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~  105 (369)
T cd00614          38 GNPTVDALEKKLAALEGG--------EAALA--FSSGMAAISTV--LLALLKAGDHVVASDDLYGGTYRLFERLLPKLGI  105 (369)
T ss_pred             CChhHHHHHHHHHHHHCC--------CCEEE--EcCHHHHHHHH--HHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCe
Confidence            556678999999998643        34555  68889999998  444578999999999999875543    446788


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~  279 (459)
                      ++..++.+       |++.+++++++   +++++++.+|+||||.+   .++++|+++|++||+++|+|++|....... 
T Consensus       106 ~~~~v~~~-------d~~~l~~~i~~---~~~~v~~e~~~np~g~~---~dl~~i~~la~~~g~~livD~t~~~~~~~~-  171 (369)
T cd00614         106 EVTFVDPD-------DPEALEAAIKP---ETKLVYVESPTNPTLKV---VDIEAIAELAHEHGALLVVDNTFATPYLQR-  171 (369)
T ss_pred             EEEEeCCC-------CHHHHHHhcCC---CCeEEEEECCCCCCCee---cCHHHHHHHHHHcCCEEEEECCCcchhcCC-
Confidence            88877652       58899988875   67888899999999999   457889999999999999999986544211 


Q ss_pred             CCChhHHHHHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCC
Q 012647          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN  358 (459)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  358 (459)
                           .+     ..+.++++.|+||.++.+| .+.||+++  .+++..+++......    .....+...+.++...|+.
T Consensus       172 -----~~-----~~g~Divv~S~tK~l~g~~~~~gG~v~~--~~~~l~~~l~~~~~~----~g~~~~p~~a~~~l~~l~t  235 (369)
T cd00614         172 -----PL-----ELGADIVVHSATKYIGGHSDVIAGVVVG--SGEALIQRLRFLRLA----LGTILSPFDAWLLLRGLKT  235 (369)
T ss_pred             -----hh-----hhCCcEEEeccceeccCCCCceEEEEEe--CcHHHHHHHHHHHHh----hCCCCCHHHHHHHHcCCCC
Confidence                 11     1234688999999998766 77888844  333655555443221    1223444444444333332


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                                +....++..++.+.+.+.|+ +.+
T Consensus       236 ----------l~~r~~~~~~na~~la~~L~-~~~  258 (369)
T cd00614         236 ----------LPLRMERHSENALKVAEFLE-KHP  258 (369)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHH-cCC
Confidence                      23455666778888888888 764

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.86  E-value=2.5e-19  Score=176.70  Aligned_cols=196  Identities=15%  Similarity=0.077  Sum_probs=139.6

Q ss_pred             ccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH-hCCCC
Q 012647          100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGA  178 (459)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~-~~~gd  178 (459)
                      |.+.+...+++.+.+..+..  +....-..++.+.+++++    +    .+++++  |+|||+++.++.  ... +.|||
T Consensus         7 p~~~~~e~~a~~~~~~~~~~--~~~g~~~~~~e~~la~~~----g----~~~~v~--~~sgt~aL~~~l--~al~~~pGd   72 (376)
T TIGR02379         7 PPVTGQELEYIAEAISEGKL--SGDGPFSRRCETWLENRT----G----TKKALL--TPSCTAALEMAA--LLLDIQPGD   72 (376)
T ss_pred             CCCCHHHHHHHHHHHHcCCc--cCCcHHHHHHHHHHHHHh----C----CCeEEE--eCCHHHHHHHHH--HHcCCCCcC
Confidence            33467778888888865431  211112345555555553    2    467888  999999999873  333 56999


Q ss_pred             EEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 012647          179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVI  258 (459)
Q Consensus       179 ~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~  258 (459)
                      +|++++|+|..+...+...|++++.++++ ++++.+|++.+++++++   ++++++   |+||+|..   .++++|.++|
T Consensus        73 ~Viv~~~t~~~~~~~~~~~G~~~v~vd~d-~~~~~~d~~~le~~i~~---~tk~Ii---p~~~~G~~---~d~~~I~~la  142 (376)
T TIGR02379        73 EVIMPSYTFVSTANAFVLRGAKIVFVDIR-PDTMNIDETLIESAITH---RTKAIV---PVHYAGVA---CDMDTIMALA  142 (376)
T ss_pred             EEEECCCCcHHHHHHHHHcCCEEEEEecC-CCcCCCCHHHHHHhcCc---CceEEE---EeCCCCCc---cCHHHHHHHH
Confidence            99999999999999999999999999995 45678999999999875   677776   68899998   4577899999


Q ss_pred             HhcCCeeEEeccCCCCC-CCCCCCChhHHHHHHhcCCeEEEEEcC--CcCcccCCCCcceEEEEeCChhHHHHHHHH
Q 012647          259 QEKNHIPFFDVAYQGFA-SGSLDNDASSVRLFATRGMELLVAQSY--SKNLGLYAERIGAMNVVCSSSDLAARVKSQ  332 (459)
Q Consensus       259 ~~~~~~ii~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~  332 (459)
                      ++||++||+|++|.... +.+.     .+    ... ..+.+.||  +|.+. +|.+.|++  ++.++++.+++...
T Consensus       143 ~~~~i~vIeDaa~~~g~~~~~~-----~~----g~~-~~~~~fSf~~~K~l~-~g~~gG~v--~~~~~~~~~~~~~~  206 (376)
T TIGR02379       143 NKHQLFVIEDAAQGVMSTYKGR-----AL----GSI-GHLGTFSFHETKNYT-SGGEGGAL--LINDQAFIERAEII  206 (376)
T ss_pred             HHCCCEEEEECccccCCccCCc-----cc----CCC-CCEEEEeCCCCCcCc-ccCCceEE--EECCHHHHHHHHHH
Confidence            99999999999976554 3221     11    111 12333343  47786 67778998  56778866666544

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.86  E-value=1.9e-19  Score=179.17  Aligned_cols=216  Identities=17%  Similarity=0.118  Sum_probs=147.1

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcch----HHHhhhCCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH----KNIFNDARV  199 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~----~~~~~~~G~  199 (459)
                      +.....+|+++++++....       . .++  +++|+.++.++  +...+.+||+|+++.|+|...    ...++..|+
T Consensus        63 ~~p~~~~le~~lA~l~g~~-------~-~i~--~~sG~~Al~~~--l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~  130 (403)
T PRK07503         63 SNPTLALLEQRMASLEGGE-------A-AVA--LASGMGAITAT--LWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGV  130 (403)
T ss_pred             CCchHHHHHHHHHHHhCCC-------c-EEE--EcCHHHHHHHH--HHHHcCCCCEEEEccCccchHHHHHHHHHhhCCE
Confidence            4456789999999986542       3 344  57889999888  444578999999999988653    344567899


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~  279 (459)
                      +++.++..       |++.+++++++   +++++++++|+||||.+   .++++|+++|+++|+++|+|++|....... 
T Consensus       131 ~v~~vd~~-------d~~~l~~~i~~---~tklV~le~p~NPtG~~---~di~~I~~la~~~gi~lIvD~a~a~~~~~~-  196 (403)
T PRK07503        131 TVRHVDLT-------DPAALKAAISD---KTRMVYFETPANPNMRL---VDIAAVAEIAHGAGAKVVVDNTYCTPYLQR-  196 (403)
T ss_pred             EEEEeCCC-------CHHHHHHhcCc---cCcEEEEeCCCCCCCee---eCHHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence            88888762       68999998875   67888889999999999   567889999999999999999987543211 


Q ss_pred             CCChhHHHHHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCC
Q 012647          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN  358 (459)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  358 (459)
                           .+    . ...++++.|+||.++.+| .|.|+++   .+++..+++.....  ........+.+.+.++..-|+ 
T Consensus       197 -----~l----~-~g~Di~v~S~tK~l~g~gd~~gG~v~---~~~~l~~~l~~~~~--~~~~g~~~s~~~a~l~l~~L~-  260 (403)
T PRK07503        197 -----PL----E-LGADLVVHSATKYLGGHGDITAGLVV---GGKALADRIRLEGL--KDMTGAVMSPFDAFLLMRGLK-  260 (403)
T ss_pred             -----ch----h-hCCCEEEccccccccCCCceeEEEEE---cCHHHHHHHHhhhH--HhCcCCCCCHHHHHHHHcCcc-
Confidence                 11    1 134588999999999776 6677764   37775555542111  111122344444444333232 


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                               .+....++..++...+.+.|+ +.
T Consensus       261 ---------tl~~r~~~~~~na~~~a~~L~-~~  283 (403)
T PRK07503        261 ---------TLALRMDRHCASAQAVAEWLA-RH  283 (403)
T ss_pred             ---------hHHHHHHHHHHHHHHHHHHHH-hC
Confidence                     233344444566666677776 54

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.86  E-value=6.6e-19  Score=176.21  Aligned_cols=331  Identities=9%  Similarity=0.050  Sum_probs=205.3

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      +...+|+..|..--..|.  .+|.|.+++.+.++... ........-..++.+.+++++ +       .+.+++  +++|
T Consensus        36 g~~~lD~~s~~~~~~~Gh--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~-------~~~~~~--~~SG  103 (401)
T TIGR01885        36 GKRYLDFLSAYSAVNQGH--CHPKIVKALTEQAQKLTLSSRAFYNDVFGEFAEYVTKLF-G-------YDKVLP--MNTG  103 (401)
T ss_pred             CCEEEEcccCHhhccCCC--CCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhc-C-------CCEEEE--eCcc
Confidence            356889988743111122  37899999988875421 111112334456777777764 2       256888  9999


Q ss_pred             hhHHHHHHHHHHHh-------CC-CCEEEEcCCCCcch-HHHhhhC---------CC---CeeeeeeecCCCCCCCHHHH
Q 012647          161 TGSLRLAAALIERY-------FP-GAKVLISSPTWGNH-KNIFNDA---------RV---PWSEYRYYDPKTVGLDFEGM  219 (459)
Q Consensus       161 t~a~~l~~~~~~~~-------~~-gd~Vlv~~p~y~~~-~~~~~~~---------G~---~v~~v~~~~~~~~~~d~e~l  219 (459)
                      ++|++.+.++...+       .+ .++|+...-+|... ...+...         |.   .++.+|.       .|++.+
T Consensus       104 s~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l  176 (401)
T TIGR01885       104 AEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPY-------NNLEAL  176 (401)
T ss_pred             HHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCC-------CCHHHH
Confidence            99999997776543       13 35677777777643 2222222         11   1223332       268999


Q ss_pred             HHHHHcCCCCcEEEEeCCCCCCCCCCCCHH-HHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012647          220 IADIKAAPGGSFILLHGCAHNPTGIDPTPE-QWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (459)
Q Consensus       220 ~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~-~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (459)
                      ++.++..+++..++++..+++++|.+.+++ .+++|.++|++||+++|+||+|.+++..+   ..+.. ......++++ 
T Consensus       177 e~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G---~~~~~-~~~~~~~di~-  251 (401)
T TIGR01885       177 EEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTG---KLLCV-DHENVKPDIV-  251 (401)
T ss_pred             HHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---hhhHH-hhcCCCCCEE-
Confidence            998875445667778888999999988644 69999999999999999999998876532   12222 1112223433 


Q ss_pred             EEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012647          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  378 (459)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  378 (459)
                        ++||.++..|+|+|+++.   +++..+    .+.......+.+.+.+++.++...|+..      .+  +...++.++
T Consensus       252 --~~gK~l~~g~~~ig~v~~---~~~i~~----~~~~~~~~~t~~~~p~~~~aa~a~L~~i------~~--~~l~~~~~~  314 (401)
T TIGR01885       252 --LLGKALSGGVYPVSAVLA---DDDVML----TIKPGEHGSTYGGNPLACAVAVAALEVL------EE--EKLAENAEK  314 (401)
T ss_pred             --EeeccccCCCCCcEEEEE---cHHHHh----hccCCCCCCCCCCCHHHHHHHHHHHHHH------Hh--ccHHHHHHH
Confidence              467999976699999866   777433    3332112222234455556655444311      11  134456677


Q ss_pred             HHHHHHHHHhhccCCCCCcccccCCcceee-ecCCC------HHHHHHHHhcccEEEcCCC----cEEEc-cCChhhHHH
Q 012647          379 VRQKLFDSLSAKDKSGKDWSFILRQIGMFS-FTGLN------KAQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEY  446 (459)
Q Consensus       379 ~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~-~~~l~------~~~~~~ll~~~gI~v~~gg----Ris~~-~~~~e~i~~  446 (459)
                      +.+++.+.|+ +++.+ -+..+.+.|.++. +++.+      .++..+|.+ +||.+.|.+    ||+.. ..++++|++
T Consensus       315 ~~~~~~~~L~-~l~~~-~~~~~~g~g~~~~i~~~~~~~~~~~~~l~~~l~~-~Gv~v~~~~~~~lRi~p~l~~t~~~i~~  391 (401)
T TIGR01885       315 LGEIFRDQLK-KLPKP-IITEVRGRGLLNAIVIDESKTGRTAWDLCLKLKE-KGLLAKPTHGNIIRLAPPLVITEEQLDE  391 (401)
T ss_pred             HHHHHHHHHH-hccCC-ceeEEeecCeeEEEEeccCcchhHHHHHHHHHHh-CCEEEEecCCCEEEEeCCccCCHHHHHH
Confidence            7889999998 87521 1222345566554 34332      234556655 699998875    77754 248999999


Q ss_pred             HHHHHHHHHh
Q 012647          447 LADAIIDSYH  456 (459)
Q Consensus       447 ~~~~l~~~~~  456 (459)
                      ++++|.++++
T Consensus       392 ~l~~l~~~l~  401 (401)
T TIGR01885       392 GLEIIKKVID  401 (401)
T ss_pred             HHHHHHHHhC
Confidence            9999998763

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.86  E-value=3e-19  Score=181.70  Aligned_cols=330  Identities=12%  Similarity=0.056  Sum_probs=203.4

Q ss_pred             eecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCC---CCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhH
Q 012647           87 NLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY---LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (459)
Q Consensus        87 ~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y---~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (459)
                      -++.|.+    .+.+ +|.+.+++.+.......+.|   ....|..+++..+.+++....|.+    +..+..+.|+++.
T Consensus        72 ~~g~G~~----~~~~-~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~----~~~l~~~~GA~a~  142 (481)
T PRK04366         72 FYPLGSC----TMKY-NPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMD----AVTLQPAAGAHGE  142 (481)
T ss_pred             eecCccc----CCCC-CHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCC----ceEEEeCcHHHHH
Confidence            3666765    3333 77788877765211123567   346688899998888887776653    3333224444444


Q ss_pred             HHHHHHHHH--HhCCCC----EEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCC
Q 012647          164 LRLAAALIE--RYFPGA----KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (459)
Q Consensus       164 ~~l~~~~~~--~~~~gd----~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~  237 (459)
                      +..+. ++.  ...+||    +|++++|.|+.|...++..|++++.+|+  +.++.+|++.+++++++   +++++++++
T Consensus       143 ~~~l~-~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~--~~~~~~D~e~L~~~i~~---~t~~V~v~~  216 (481)
T PRK04366        143 LTGLL-MIRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPS--NEDGLVDLEALKAAVGE---DTAALMLTN  216 (481)
T ss_pred             HHHHH-HHHHHhhccCcCCCCEEEEcCCccHhHHHHHHHcCCEEEEeec--CCCCCcCHHHHHhhccc---CCeEEEEeC
Confidence            44321 122  245676    9999999999999999999999999998  34678999999999875   678888889


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCC-CCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccC----CCC
Q 012647          238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFA-SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY----AER  312 (459)
Q Consensus       238 p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~----G~R  312 (459)
                      || |||.+  .+++++|+++|+++|.++++|+++. .+ .+..  +       ....+.+++++|.+|.++.|    |-.
T Consensus       217 Pn-~tG~~--~~dl~eI~~~a~~~gal~iVD~a~~-~~~~g~~--~-------~~~~GaD~~~~~~hK~l~~P~g~Ggp~  283 (481)
T PRK04366        217 PN-TLGLF--ERNILEIAEIVHEAGGLLYYDGANL-NAILGKA--R-------PGDMGFDVVHLNLHKTFSTPHGGGGPG  283 (481)
T ss_pred             CC-Ccccc--chHHHHHHHHHHHcCCEEEEEecCh-hhhcccC--C-------ccccCCCEEEEechhhcCCCCCCCCCC
Confidence            88 99965  3589999999999999999999953 22 1100  0       12234678899999988644    344


Q ss_pred             cceEEEEeCChhHHHHHHHHHH--h-------h------ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012647          313 IGAMNVVCSSSDLAARVKSQLK--R-------L------ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  377 (459)
Q Consensus       313 iG~~~~v~~~~~~~~~~~~~~~--~-------~------~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  377 (459)
                      +|++.+   .+++.+.+...+.  .       .      .+......+.....++...+..-+     .+.++++.++..
T Consensus       284 ~G~l~~---~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G-----~~Gl~~~a~~~~  355 (481)
T PRK04366        284 SGPVGV---KEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLG-----AEGLREVSEDAV  355 (481)
T ss_pred             eeeeee---hhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence            678755   4443332210000  0       0      000000111122222222221101     244667777888


Q ss_pred             HHHHHHHHHHhhccCCCCCcccccCCcceeee--c-----CCCHH-HHHHHHhcccEEEc-------CCC--cEEEccC-
Q 012647          378 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF--T-----GLNKA-QSDNMTNKWHVYMT-------KDG--RISLAGL-  439 (459)
Q Consensus       378 ~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~--~-----~l~~~-~~~~ll~~~gI~v~-------~gg--Ris~~~~-  439 (459)
                      .+.+++.+.|+ ++ +.  +.+..+...-|++  .     +.+.. ..++|.+ +||.+.       ..+  |+|++.. 
T Consensus       356 ~~a~~l~~~L~-~~-~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~L~~-~Gi~~~~~~~p~~~~~~l~is~~e~~  430 (481)
T PRK04366        356 LNANYLKARLK-DI-YD--LPYDRPCMHEFVLSGKKLKETGVRTLDIAKRLLD-YGFHPPTIYFPLIVPEALMIEPTETE  430 (481)
T ss_pred             HHHHHHHHHhH-hh-Cc--ccCCCCeeEEEEEECccccccCCCHHHHHHHHHH-CCccCCccccccccCCeEEEcccCCC
Confidence            88999999998 75 10  1211111111222  1     23444 4556665 698764       123  7887644 


Q ss_pred             ChhhHHHHHHHHHHHHhh
Q 012647          440 SLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       440 ~~e~i~~~~~~l~~~~~~  457 (459)
                      ++++|+.++++|.++.++
T Consensus       431 t~edid~l~~~l~~i~~~  448 (481)
T PRK04366        431 SKETLDAFIAAMKQIAEE  448 (481)
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            789999999999998765

>PRK07505 hypothetical protein; Provisional

Probab=99.86  E-value=9.2e-19  Score=175.21  Aligned_cols=323  Identities=11%  Similarity=0.049  Sum_probs=183.5

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhc-C-CCCCC----CCCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-G-ENKEY----LPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~-~~~~Y----~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (459)
                      +...+|++...++   +. .-+|+|.+++.+.++. + .....    ...+...++++.+++++.        .+.+++ 
T Consensus        45 g~~~ld~~s~~~l---gl-~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~--------~~~~~~-  111 (402)
T PRK07505         45 GHTFVNFVSCSYL---GL-DTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFG--------ASVLTF-  111 (402)
T ss_pred             CceEEEeecCCcc---CC-CCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhC--------CCEEEE-
Confidence            3567898765442   32 2378899999888754 1 11111    123345677777777752        133444 


Q ss_pred             ecccchhHHHHHHHHHHH-h-CCCC-EEEEcCCCCcchH---HHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCC
Q 012647          156 QGLSGTGSLRLAAALIER-Y-FPGA-KVLISSPTWGNHK---NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (459)
Q Consensus       156 ~t~ggt~a~~l~~~~~~~-~-~~gd-~Vlv~~p~y~~~~---~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~  229 (459)
                        ++|++++..+.+++.. + .+|+ .|++.+..|.+-.   ......+.+++.+|.       .|++.+++.+++   +
T Consensus       112 --~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~~~~---~  179 (402)
T PRK07505        112 --TSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADETEVETIDH-------NDLDALEDICKT---N  179 (402)
T ss_pred             --CChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCC-------CCHHHHHHHHhc---C
Confidence              5667788877555432 2 2233 4667775553321   111223456666665       378999998875   4


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEEcCCcCccc
Q 012647          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGL  308 (459)
Q Consensus       230 ~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~  308 (459)
                      ++++++++|+||||.+++   +++|.++|++||+++|+||+|...+++.. ........+.. ..+++++++||||.|++
T Consensus       180 ~~~~vl~~p~~~~G~~~~---~~~i~~l~~~~~~~li~DEa~~~~~~g~~-g~~~~~~~~~~~~~d~~i~~~s~sK~~~~  255 (402)
T PRK07505        180 KTVAYVADGVYSMGGIAP---VKELLRLQEKYGLFLYIDDAHGLSIYGKN-GEGYVRSELDYRLNERTIIAASLGKAFGA  255 (402)
T ss_pred             CCEEEEEecccccCCcCC---HHHHHHHHHHcCCEEEEECcccccCcCCC-CCchHHHHcCCCCCCCeEEEEechhhhhc
Confidence            567777899999999976   67788899999999999999754433321 11122222211 34678999999999997


Q ss_pred             CCCCcceEEEEeCChhHHHHHHHHHHhhcc-cccc-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          309 YAERIGAMNVVCSSSDLAARVKSQLKRLAR-PMYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDS  386 (459)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  386 (459)
                      +|   ||+  ++.+++..+.+.    .... .+++ +++..++.++...++-  ..   ++.+.+..+.++++.+.+.+.
T Consensus       256 ~G---g~~--~~~~~~~~~~~~----~~~~~~t~~~~~~~~a~aa~~a~l~~--~~---~~~~~~~~~~l~~~~~~~~~~  321 (402)
T PRK07505        256 SG---GVI--MLGDAEQIELIL----RYAGPLAFSQSLNVAALGAILASAEI--HL---SEELDQLQQKLQNNIALFDSL  321 (402)
T ss_pred             cC---eEE--EeCCHHHHHHHH----HhCCCceeCCCCCHHHHHHHHHHHHH--Hh---ccCcHHHHHHHHHHHHHHHHH
Confidence            76   886  345666444443    2222 2222 3333444444333320  00   111233344444444433322


Q ss_pred             HhhccCCCCCcccccCCcceeeec--CC---CHHHHHHHHhcccEEEcCC-------C----cEEEcc-CChhhHHHHHH
Q 012647          387 LSAKDKSGKDWSFILRQIGMFSFT--GL---NKAQSDNMTNKWHVYMTKD-------G----RISLAG-LSLAKCEYLAD  449 (459)
Q Consensus       387 L~~~~g~~~~~~~~~~~~g~f~~~--~l---~~~~~~~ll~~~gI~v~~g-------g----Ris~~~-~~~e~i~~~~~  449 (459)
                      +. ..        ....+.++.++  +.   ..++.++|++ +||.+.+.       +    ||+++. .++|+++++++
T Consensus       322 ~~-~~--------~~g~~~~i~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~  391 (402)
T PRK07505        322 IP-TE--------QSGSFLPIRLIYIGDEDTAIKAAKQLLD-RGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCS  391 (402)
T ss_pred             HH-hc--------CCCCCCCEEEEEeCCHHHHHHHHHHHHH-CCCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHH
Confidence            22 10        01111111122  21   2345667775 59999753       2    888763 28999999999


Q ss_pred             HHHHHHhh
Q 012647          450 AIIDSYHN  457 (459)
Q Consensus       450 ~l~~~~~~  457 (459)
                      +|.+++++
T Consensus       392 ~l~~~l~~  399 (402)
T PRK07505        392 LLKEILDE  399 (402)
T ss_pred             HHHHHHHh
Confidence            99998864

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.85  E-value=6.7e-19  Score=174.62  Aligned_cols=215  Identities=13%  Similarity=0.088  Sum_probs=148.1

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HhhhCCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARV  199 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~G~  199 (459)
                      +.....+|++.++++..        .+++++  ++||++|+.++  +...+.+||+|++++|+|..+..    .++..|+
T Consensus        63 ~~pt~~~Le~~lA~l~g--------~~~~l~--~~sgt~Ai~~~--l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi  130 (394)
T PRK07050         63 ATPTSLALAQRLAEIEG--------GRHALL--QPSGLAAISLV--YFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGI  130 (394)
T ss_pred             CCHHHHHHHHHHHHHhC--------CCeEEE--eccHHHHHHHH--HHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCe
Confidence            55567889999998853        257888  99999999998  44457899999999999998664    4567898


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~  279 (459)
                      +++.++..       +.+.+++++++   +++++++++|+||+|..   .++++|+++|+++|+++|+|++|......  
T Consensus       131 ~v~~vd~~-------~~~~l~~~i~~---~tklV~le~p~Np~~~~---~di~~I~~ia~~~gi~livD~a~a~~~~~--  195 (394)
T PRK07050        131 TVRFYDPL-------IGAGIADLIQP---NTRLIWLEAPGSVTMEV---PDVPAITAAARARGVVTAIDNTYSAGLAF--  195 (394)
T ss_pred             EEEEECCC-------CHHHHHHhcCC---CCeEEEEECCCCCCccH---hhHHHHHHHHHHcCCEEEEECCccccccc--
Confidence            88887641       34678888775   78899999999999876   99999999999999999999998654321  


Q ss_pred             CCChhHHHHHHhcCCeEEEEEcCCcCccc-CCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCC
Q 012647          280 DNDASSVRLFATRGMELLVAQSYSKNLGL-YAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN  358 (459)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  358 (459)
                        .  ++    . .+.++++.|++|.++- .+.+.|++  ++.+++..+++.....    ....+.+...+..+...|.+
T Consensus       196 --~--~l----~-~GaDi~v~S~tK~~~g~~~~~gG~v--~~~~~~~~~~~~~~~~----~~G~~~~~~~a~l~lr~l~t  260 (394)
T PRK07050        196 --K--PF----E-HGVDISVQALTKYQSGGSDVLMGAT--ITADAELHAKLKLARM----RLGIGVSADDCSLVLRGLPS  260 (394)
T ss_pred             --C--HH----H-cCCeEEEEECCceecCCCCeeEEEE--EECCHHHHHHHHHHHH----hcCCCCCHHHHHHHHcCCCc
Confidence              0  11    1 1347889999999962 33457877  4567775555443222    22224444444444333332


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                                +....++..++...+.+.|+ +.
T Consensus       261 ----------l~~Rl~~~~~~a~~la~~L~-~~  282 (394)
T PRK07050        261 ----------LQVRLAAHDRSALEVAEWLK-AR  282 (394)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHH-hC
Confidence                      22334444445556666666 44

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.85  E-value=4e-19  Score=176.60  Aligned_cols=214  Identities=9%  Similarity=0.023  Sum_probs=149.6

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCC----cchHHHhhhCCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTW----GNHKNIFNDARV  199 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y----~~~~~~~~~~G~  199 (459)
                      +.....+|++.+|++...        ++.++  +++|+.++..+  +...+.+||+|+++...|    ..+...++..|+
T Consensus        68 ~~p~~~~le~~lA~l~g~--------~~al~--~~sG~~Ai~~~--l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~  135 (403)
T PRK07810         68 GNPTVSMFEERLRLIEGA--------EACFA--TASGMSAVFTA--LGALLGAGDRLVAARSLFGSCFVVCNEILPRWGV  135 (403)
T ss_pred             CCchHHHHHHHHHHHhCC--------CcEEE--ECChHHHHHHH--HHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCc
Confidence            455678999999999643        34556  79999999887  445578999999988554    445566778899


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~  279 (459)
                      +++.++.       .|++++++++++   ++++|++++|+||||.+   .++++|+++|+++|+++|+|++|....... 
T Consensus       136 ~v~~vd~-------~d~~~l~~ai~~---~tklV~~esp~Nptg~v---~dl~~I~~la~~~g~~vivD~a~a~~~~~~-  201 (403)
T PRK07810        136 ETVFVDG-------EDLSQWEEALSV---PTQAVFFETPSNPMQSL---VDIAAVSELAHAAGAKVVLDNVFATPLLQR-  201 (403)
T ss_pred             EEEEECC-------CCHHHHHHhcCc---CceEEEEECCCCCCCee---cCHHHHHHHHHHcCCEEEEECCCCccccCC-
Confidence            9988864       288999999876   78899999999999999   468889999999999999999987544321 


Q ss_pred             CCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc-ceEEEEeCChhHHH-HHHHHHHhhccccccCCchHHHHHHHHHhC
Q 012647          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAA-RVKSQLKRLARPMYSNPPVHGARIVANVVG  357 (459)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  357 (459)
                           ++     ..+.++++.|++|.++.+|.++ |+++  + +++.+. .+.....    ......+...+.++..-|+
T Consensus       202 -----~~-----~~gaDivv~S~tK~l~g~g~~~gG~v~--~-~~~~~~~~l~~~~~----~~g~~~s~~~a~l~l~~L~  264 (403)
T PRK07810        202 -----GL-----PLGADVVVYSGTKHIDGQGRVLGGAIL--G-DREYIDGPVQKLMR----HTGPALSAFNAWVLLKGLE  264 (403)
T ss_pred             -----hh-----hcCCcEEEccCCceecCCcCceeEEEE--e-ChHHHHHHHHHHHH----HhCCCCCHHHHHHHHhccC
Confidence                 11     1134688999999999899998 5543  2 555333 2322212    2222445544444444333


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          358 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                      .          +....++..++...+.+.|+ +.
T Consensus       265 t----------l~~R~~~~~~~a~~~a~~L~-~~  287 (403)
T PRK07810        265 T----------LALRVRHSNASALRIAEFLE-GH  287 (403)
T ss_pred             c----------HHHHHHHHHHHHHHHHHHHh-cC
Confidence            2          34555566666666777777 54

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.85  E-value=1.5e-18  Score=174.39  Aligned_cols=341  Identities=14%  Similarity=0.055  Sum_probs=198.5

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCC--CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...+|+..|.--..-|+.  +|.|.+++.+.+++...  ..|.......++-+.+++.....      -+.+.+  +++
T Consensus        40 G~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~~------~~~v~f--~~s  109 (443)
T PRK08360         40 GNEYIDFLSDAAVQNVGHN--NPRVVKAIKEQTDKLIHYTPIYGFPVEPLLLAEKLIEIAPGD------NPKVSF--GLS  109 (443)
T ss_pred             CCEEEEccccHhhcccCCC--CHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCC------CCEEEE--cCC
Confidence            3578898888543333443  78899999888865211  11212222234444444443211      257888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH-HhhhCC------------CCeeeeeeecCCC--CC--------CCH
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKN-IFNDAR------------VPWSEYRYYDPKT--VG--------LDF  216 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~-~~~~~G------------~~v~~v~~~~~~~--~~--------~d~  216 (459)
                      |++|++.+.++...+....+|+...-+|.+... .+...|            ..+..+|..+...  +.        -++
T Consensus       110 GsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (443)
T PRK08360        110 GSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECV  189 (443)
T ss_pred             HHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHH
Confidence            999999999887766656788888888866431 111111            1133343311100  10        124


Q ss_pred             HHHHHHHHc--CCCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC
Q 012647          217 EGMIADIKA--APGGSFILLHGCAHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (459)
Q Consensus       217 e~l~~~i~~--~~~~~~~ii~~~p~NPTG~~~s-~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~  293 (459)
                      +.+++.+..  .+++...+++...+||+|.+++ ++.+++|.++|++||+++|+||+|.+++..+   ..+....+ +..
T Consensus       190 ~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G---~~~a~~~~-~~~  265 (443)
T PRK08360        190 EYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTG---KWFAIEHF-GVE  265 (443)
T ss_pred             HHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---cchhhhhc-CCC
Confidence            456666653  1245777777767899999887 5579999999999999999999999887542   22222222 333


Q ss_pred             CeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHH
Q 012647          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMA  373 (459)
Q Consensus       294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~  373 (459)
                      ++++   ++||.++ +|+|+||+++   +++..+.    +.......+.+.+.+++.++...|+.-      ++  +...
T Consensus       266 pDii---tlsK~l~-~G~pigav~~---~~~i~~~----~~~~~~~~T~~~~p~~~aaa~a~l~~l------~~--~~l~  326 (443)
T PRK08360        266 PDII---TLGKPLG-GGLPISATIG---RAEIMDS----LPPLAHAFTLSGNPVASAAALAVIEEI------EE--KNLL  326 (443)
T ss_pred             CCEE---Eeccccc-CCceeEEEEE---cHHHHhh----hcCCCCCCCCCcCHHHHHHHHHHHHHH------HH--cCHH
Confidence            4443   7799999 8999999866   7774433    332222223344555566665554311      00  1234


Q ss_pred             HHHHHHHHHHHHHHhhcc--CCCCCcccccCCcceeee--cCC------C----HHHHHHHHhcccEEEcCC-C---cEE
Q 012647          374 GRIKNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSF--TGL------N----KAQSDNMTNKWHVYMTKD-G---RIS  435 (459)
Q Consensus       374 ~~~~~~~~~l~~~L~~~~--g~~~~~~~~~~~~g~f~~--~~l------~----~~~~~~ll~~~gI~v~~g-g---Ris  435 (459)
                      ++.+++-+++.+.|+ ++  ..|- +..+...|-++..  ..-      +    ..+...+++ +||.+.+. +   |++
T Consensus       327 ~~~~~~g~~l~~~L~-~l~~~~~~-v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~~~~lr~~  403 (443)
T PRK08360        327 KRAEKLGNYTKKRLE-EMKKKHEL-IGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWE-LGLIVTFFSGNVLRIQ  403 (443)
T ss_pred             HHHHHHHHHHHHHHH-HHHHhCCC-eeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHHH-CCeEEeecCCCEEEEe
Confidence            455555555555554 33  1110 1223334333321  110      1    133455555 69998753 3   774


Q ss_pred             Ecc-CChhhHHHHHHHHHHHHhhc
Q 012647          436 LAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       436 ~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                      .+. .++++++++++++.++++.+
T Consensus       404 P~l~~t~~~id~~~~~l~~~l~~~  427 (443)
T PRK08360        404 PPLTIEKEVLDEGLDILEEAIEDV  427 (443)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHH
Confidence            332 29999999999999998764

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.85  E-value=8.4e-19  Score=172.77  Aligned_cols=216  Identities=10%  Similarity=0.026  Sum_probs=148.1

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----hhhCCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARV  199 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~G~  199 (459)
                      +......|++++|++..        .+++++  ++||++++.++  +...+.+||+|+++.|+|......    ....|+
T Consensus        51 ~npt~~~Le~~lA~leg--------~e~ivv--t~gg~~Ai~~~--l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi  118 (388)
T PRK08861         51 GNPNRGLLEQTLSELES--------GKGAVV--TNCGTSALNLW--VSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDF  118 (388)
T ss_pred             CCchHHHHHHHHHHHhC--------CCeEEE--ECCHHHHHHHH--HHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCe
Confidence            45567899999999964        367888  99999999998  444578999999999999864333    234466


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~  279 (459)
                      +++.++.       .|++.+++++++   +++++++++|+||||.+++   +++|.++|+++|+++|+|++|....... 
T Consensus       119 ~v~~vd~-------~d~e~l~~~i~~---~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~vIvDea~~~~~~~~-  184 (388)
T PRK08861        119 KVQFVDQ-------SDAAALDAALAK---KPKLILLETPSNPLVRVVD---IAELCQKAKAVGALVAVDNTFLTPVLQK-  184 (388)
T ss_pred             EEEEECC-------CCHHHHHHhcCc---CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCccccccCC-
Confidence            7666642       488999988875   7889999999999999965   5678888999999999999987643221 


Q ss_pred             CCChhHHHHHHhcCCeEEEEEcCCcCcccC-CCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCC
Q 012647          280 DNDASSVRLFATRGMELLVAQSYSKNLGLY-AERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN  358 (459)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  358 (459)
                           .+     ..+-++++.|++|.++-+ +...|+++  +.+++..+++.. +..   ......+...+..+..-|+.
T Consensus       185 -----pl-----~~GaDivv~S~tK~l~G~~d~~gG~i~--~~~~~~~~~~~~-~~~---~~G~~~~p~~a~l~~rgl~T  248 (388)
T PRK08861        185 -----PL-----ELGADFVIHSTTKYINGHSDVIGGVLI--TKTKEHAEELAW-WGN---CIGATGTPFDSYMTLRGIRT  248 (388)
T ss_pred             -----Cc-----ccCCCEEEeecceeccCCCcceeEEEE--ecHHHHHHHHHH-HHh---ccCCCCChHHHHHHHhcCCC
Confidence                 11     113468999999998743 46677773  445554444332 121   22223344444444333333


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                                +..+.++..+....+.+.|+ ..+
T Consensus       249 ----------l~lR~~~~~~~a~~~a~~L~-~~p  271 (388)
T PRK08861        249 ----------LGARMRVHEESAQQILAYLQ-TQS  271 (388)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHH-hCC
Confidence                      34455666667777777777 553

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.85  E-value=2.3e-18  Score=166.73  Aligned_cols=323  Identities=14%  Similarity=0.114  Sum_probs=216.3

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhc-C-----CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-G-----ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~-----~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (459)
                      +..++||+...|+   +... .|.+++++.+.+++ +     ...-++...-..+|.+.+|+|+..       +.-+++ 
T Consensus        38 ~~~~~nf~SNdYL---GLa~-~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~-------e~al~f-  105 (388)
T COG0156          38 GRKVLNFCSNDYL---GLAS-HPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGA-------EAALLF-  105 (388)
T ss_pred             CceeEeeeccCcc---cccC-CHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCC-------CcEEEE-
Confidence            4679999999885   3332 67788888887754 1     112244455567899999999644       344555 


Q ss_pred             ecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCC---CCcEE
Q 012647          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP---GGSFI  232 (459)
Q Consensus       156 ~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~---~~~~~  232 (459)
                        .+|=.|+..+  +-+.+.++|.|+...-.+.....-++..+++++.+..       .|++.|++.+++.+   .+.++
T Consensus       106 --~SGy~AN~~~--i~~l~~~~dli~~D~lnHASiidG~rls~a~~~~f~H-------nD~~~Le~~l~~~~~~~~~~~~  174 (388)
T COG0156         106 --SSGFVANLGL--LSALLKKGDLIFSDELNHASIIDGIRLSRAEVRRFKH-------NDLDHLEALLEEARENGARRKL  174 (388)
T ss_pred             --cccchhHHHH--HHHhcCCCcEEEEechhhhhHHHHHHhCCCcEEEecC-------CCHHHHHHHHHhhhccCCCceE
Confidence              4444455444  3444668999999999998888889999999999876       37889998887621   13577


Q ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHH-HH-HhcCCeEEEEEcCCcCcccCC
Q 012647          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR-LF-ATRGMELLVAQSYSKNLGLYA  310 (459)
Q Consensus       233 ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~-~~-~~~~~~~i~~~S~SK~~~~~G  310 (459)
                      |++...-.-.|.+   .++++|++++++|+.++++||+|.-..+++   ....+. .+ +...+.+++++||||.||..|
T Consensus       175 IvtegVfSMdGdi---ApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~---~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G  248 (388)
T COG0156         175 IVTEGVFSMDGDI---APLPELVELAEKYGALLYVDEAHAVGVLGP---NGRGLAEHFGLEPEEVDIIVGTLGKALGSSG  248 (388)
T ss_pred             EEEeccccCCCCc---CCHHHHHHHHHHhCcEEEEEccccccccCC---CCccHHHHhCCCCccceEEEEEchhhhcccC
Confidence            7778888888999   899999999999999999999987666653   112222 22 122345899999999999776


Q ss_pred             CCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012647          311 ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK  390 (459)
Q Consensus       311 ~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  390 (459)
                         ||+.+   +....+.++......... +.-||..+ .++...|+   .    .+.-...+++++++...+.+.++ .
T Consensus       249 ---g~v~g---~~~~~d~L~~~ar~~ifS-talpP~~a-aa~~~al~---~----l~~~~~~r~~L~~~~~~~~~~~~-~  312 (388)
T COG0156         249 ---GYIAG---SAALIDYLRNRARPFIFS-TALPPAVA-AAALAALR---I----LEEGPERRERLQELAAFFRSLLK-A  312 (388)
T ss_pred             ---ceeeC---cHHHHHHHHHhCCceecc-CCCCHHHH-HHHHHHHH---H----HHhCHHHHHHHHHHHHHHHHHHH-h
Confidence               77644   999776666654443322 22233332 12222221   1    11124667777778888876666 6


Q ss_pred             cCCCCCcccccCCccee-eecCC---CHHHHHHHHhcccEEEcCC-------C----cEEEccC-ChhhHHHHHHHHHHH
Q 012647          391 DKSGKDWSFILRQIGMF-SFTGL---NKAQSDNMTNKWHVYMTKD-------G----RISLAGL-SLAKCEYLADAIIDS  454 (459)
Q Consensus       391 ~g~~~~~~~~~~~~g~f-~~~~l---~~~~~~~ll~~~gI~v~~g-------g----Ris~~~~-~~e~i~~~~~~l~~~  454 (459)
                      .+    +...+....+. +.+|.   ..+....|+++ ||++.+-       |    |++++.. ++++|+.+++++.++
T Consensus       313 ~~----~~~~~s~s~I~pv~~gd~~~a~~~s~~l~~~-Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~  387 (388)
T COG0156         313 LG----LVLLPSESPIIPVILGDEERALEASRALLEE-GIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV  387 (388)
T ss_pred             cC----CccCCCCCCeeeeEeCCHHHHHHHHHHHHHC-CeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence            66    34434444433 33454   23556788887 9988653       3    8887654 899999999998775

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.84  E-value=1.1e-18  Score=172.43  Aligned_cols=215  Identities=16%  Similarity=0.115  Sum_probs=145.5

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh---hCCCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN---DARVP  200 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~---~~G~~  200 (459)
                      ......+|++.+|+++..        +++++  +++|+.|+..+  +...+.+||+|+++.|+|..+...++   ..|++
T Consensus        51 ~np~~~~lE~~lA~l~g~--------~~~l~--~~sG~~Ai~~~--l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~  118 (385)
T PRK08574         51 ENPTLRPLEEALAKLEGG--------VDALA--FNSGMAAISTL--FFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVK  118 (385)
T ss_pred             CCccHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH--HHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcE
Confidence            345678999999999643        45666  78999999988  55558899999999999998776664   45666


Q ss_pred             eeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCC
Q 012647          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (459)
Q Consensus       201 v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~  280 (459)
                      ++.++        +|++.+++++++  .+++++++++|+||||.+++   +++|+++|+++|+++|+|++|......   
T Consensus       119 v~~~~--------~d~~~l~~~i~~--~~tklV~ie~p~NPtG~v~d---l~~I~~la~~~gi~livD~t~a~~~~~---  182 (385)
T PRK08574        119 VVLAY--------PSTEDIIEAIKE--GRTKLVFIETMTNPTLKVID---VPEVAKAAKELGAILVVDNTFATPLLY---  182 (385)
T ss_pred             EEEEC--------CCHHHHHHhcCc--cCceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCccccC---
Confidence            55432        367889888864  26788889999999999965   678999999999999999997432211   


Q ss_pred             CChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcce-EEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCCh
Q 012647          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA-MNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNP  359 (459)
Q Consensus       281 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~  359 (459)
                       .  .+     ..+.++++.|+||.++.+|-.+|. +  ++.+++..+++.....    ......+...+..+..-|+. 
T Consensus       183 -~--~l-----~~GaDivv~S~sK~l~g~~d~~gG~v--i~~~~~~~~~~~~~~~----~~g~~~~p~~a~l~l~~l~t-  247 (385)
T PRK08574        183 -R--PL-----RHGADFVVHSLTKYIAGHNDVVGGVA--VAWSGEFLEELWEWRR----RLGTIMQPFEAYLVLRGLKT-  247 (385)
T ss_pred             -C--hh-----hhCCcEEEeeCceeecCCCCceeEEE--EECcHHHHHHHHHHHH----hcCCCCCHHHHHHHHcccCc-
Confidence             1  11     123578999999999877776644 5  3566775555443222    11223333333333322222 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          360 ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                               +....++..++...+.+.|+ ..
T Consensus       248 ---------L~~R~~~~~~na~~la~~L~-~~  269 (385)
T PRK08574        248 ---------LEVRFERQCRNAMAIAEFLS-EH  269 (385)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHH-cC
Confidence                     33444555556677777776 54

>TIGR01814 kynureninase kynureninase

Probab=99.84  E-value=1.1e-18  Score=174.95  Aligned_cols=328  Identities=16%  Similarity=0.088  Sum_probs=194.2

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhc---CCC-CCCC---CCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER---GEN-KEYL---PIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~---~~~-~~Y~---~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (459)
                      ++++.|..+.-    + + +|+.+.+++.+++..   ... ..+.   ......+.++.+ ++++.      ++++|++ 
T Consensus        26 ~~~iyld~~a~----g-~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~------~~~~v~~-   91 (406)
T TIGR01814        26 NAVIYLDGNSL----G-L-MPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLKL-RLVGA------KEDEVVV-   91 (406)
T ss_pred             CCcEEecCCCc----C-c-CcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhccc-cccCC------CCCcEEE-
Confidence            34566664432    3 3 488888888876632   100 1111   101112222333 34332      3789999 


Q ss_pred             ecccchhHHHHHHHHHHHhCCC---CEEEEcCCCCcch----HHHhhhCCCCe----eeeeeecCCCCCCCHHHHHHHHH
Q 012647          156 QGLSGTGSLRLAAALIERYFPG---AKVLISSPTWGNH----KNIFNDARVPW----SEYRYYDPKTVGLDFEGMIADIK  224 (459)
Q Consensus       156 ~t~ggt~a~~l~~~~~~~~~~g---d~Vlv~~p~y~~~----~~~~~~~G~~v----~~v~~~~~~~~~~d~e~l~~~i~  224 (459)
                       |.|+|+++++++..  .+.+|   +.|++....|+..    ...++..|+++    +.++.  ++++.+|++.+++.++
T Consensus        92 -~~~~t~~l~~~~~~--~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~--~~~g~~~~~~l~~~~~  166 (406)
T TIGR01814        92 -MNTLTINLHLLLAS--FYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEP--REEETLRLEDILDTIE  166 (406)
T ss_pred             -eCCchHHHHHHHHH--hcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEecc--CCCCccCHHHHHHHHH
Confidence             99999999997433  24554   3688888888763    22345678887    35554  3456789999999886


Q ss_pred             cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCc
Q 012647          225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK  304 (459)
Q Consensus       225 ~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  304 (459)
                      ...++++++++++++|.||.+   .++++|+++|+++|+++++|++ |.++.-+.+         +...+.++++.|.+|
T Consensus       167 ~~~~~t~lv~~~~v~~~tG~~---~~~~~i~~~~~~~g~~~~vD~a-q~~G~~~id---------~~~~gvD~~~~s~hK  233 (406)
T TIGR01814       167 KNGDDIAVILLSGVQYYTGQL---FDMAAITRAAHAKGALVGFDLA-HAVGNVPLD---------LHDWGVDFACWCTYK  233 (406)
T ss_pred             hcCCCeEEEEEecccccccee---cCHHHHHHHHHHcCCEEEEEcc-cccCCcccc---------cccCCCCEEEEcCcc
Confidence            444578999999999999999   5688899999999999999999 666643221         223356789999999


Q ss_pred             Cc-ccCCCCcceEEEEeCChhHHHHHHHHHHhh-------------------ccccccCCchHHHHHHHHHhCChhhHHH
Q 012647          305 NL-GLYAERIGAMNVVCSSSDLAARVKSQLKRL-------------------ARPMYSNPPVHGARIVANVVGNPALFDE  364 (459)
Q Consensus       305 ~~-~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~L~~~~~~~~  364 (459)
                      .+ |.||   |++++ . ++. ...+.......                   .+...++++..+..++...|+   +.. 
T Consensus       234 ~l~g~pG---~~l~v-~-~~~-~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~---~~~-  303 (406)
T TIGR01814       234 YLNAGPG---AGAFV-H-EKH-AHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLD---IFD-  303 (406)
T ss_pred             ccCCCCC---eEEEE-e-hhh-hhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHH---HHH-
Confidence            87 4455   43433 2 222 11111100000                   000012233333222222221   110 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCcccccC-----Ccceeee-cCCCHHH-HHHHHhcccEEEcCC--C--
Q 012647          365 WKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFILR-----QIGMFSF-TGLNKAQ-SDNMTNKWHVYMTKD--G--  432 (459)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~-----~~g~f~~-~~l~~~~-~~~ll~~~gI~v~~g--g--  432 (459)
                       ...+++++++.+++.+++.+.|+ ++ |...++++..+     .+++..+ ...+.+. .+.|. ++||.+...  +  
T Consensus       304 -~~g~~~i~~~~~~l~~~l~~~l~-~~~~~~~~~~i~~~~~~~~r~~~v~~~~~~~~~~~~~~L~-~~gi~v~~~~~~~i  380 (406)
T TIGR01814       304 -QAGMEALRKKSLLLTDYLEELIK-ARCGGPPVLTIITPRDHAQRGCQLSLTHPVPGKAVFQALI-KRGVIGDKREPSVI  380 (406)
T ss_pred             -hcCHHHHHHHHHHHHHHHHHHHH-hhcCCCCceEEeCCCChhhcCCeEEEEecCCHHHHHHHHH-HCCEEEeccCCCeE
Confidence             12257788888899999999887 64 20111333333     1334332 2234444 45554 469988653  2  


Q ss_pred             cEEEc-cC-ChhhHHHHHHHHHHHH
Q 012647          433 RISLA-GL-SLAKCEYLADAIIDSY  455 (459)
Q Consensus       433 Ris~~-~~-~~e~i~~~~~~l~~~~  455 (459)
                      |||++ .+ +++||++++++|++++
T Consensus       381 RiS~~~~~nt~~did~l~~~l~~~~  405 (406)
T TIGR01814       381 RVAPVPLYNTFVDVYDAVNVLEEIL  405 (406)
T ss_pred             EEechhccCCHHHHHHHHHHHHHHh
Confidence            99984 34 8899999999998875

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.84  E-value=1.2e-18  Score=170.84  Aligned_cols=277  Identities=17%  Similarity=0.158  Sum_probs=178.7

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeee
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSE  203 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~  203 (459)
                      +.....+|++++|++..        .+++++  ++||++|+.++  + ..+.+||+|+++.+.|..-...+.....+. .
T Consensus        52 ~~p~~~~le~~lA~leg--------~~~~v~--~~sG~aAi~~~--l-~~l~~GD~VI~~~~~yg~~~~~~~~~~~~~-~  117 (364)
T PRK07269         52 KNPTRAKLEETLAAIES--------ADYALA--TSSGMSAIVLA--F-SVFPVGSKVVAVRDLYGGSFRWFNQQEKEG-R  117 (364)
T ss_pred             CCccHHHHHHHHHHHhC--------CCeEEE--eCCHHHHHHHH--H-HHhCCCCEEEEecCCcCchHHHHHHHHhcC-c
Confidence            45667899999999963        357888  99999999987  3 347899999999999975544433221110 1


Q ss_pred             eeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCCh
Q 012647          204 YRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA  283 (459)
Q Consensus       204 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~  283 (459)
                      +..    .+..|++++++++++   ++++|++++|+||||.+   .++++|+++|+++|+++|+|++|.......     
T Consensus       118 ~~~----~~~~d~~~l~~~i~~---~TklV~lesP~NPtg~~---~di~~I~~la~~~gi~vvvD~t~~~~~~~~-----  182 (364)
T PRK07269        118 FHF----TYANTEEELIAAIEE---DTDIVYIETPTNPLMVE---FDIEKVAKLAHAKGAKVIVDNTFYSPIYQR-----  182 (364)
T ss_pred             EEE----EecCCHHHHHHhcCc---CceEEEEECCCCCCCee---eCHHHHHHHHHHcCCEEEEECCCcccccCC-----
Confidence            111    234689999999975   78899999999999998   688899999999999999999975432211     


Q ss_pred             hHHHHHHhcCCeEEEEEcCCcCcccCCCC-cceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhH
Q 012647          284 SSVRLFATRGMELLVAQSYSKNLGLYAER-IGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALF  362 (459)
Q Consensus       284 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~R-iG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~  362 (459)
                       .+    . ..-++++.|++|.++-+|-= -|++  ++.++++.+++.....    ......+...+..+..-|+.    
T Consensus       183 -pl----~-~gaDivv~S~tK~l~g~~d~~gG~v--~~~~~~l~~~~~~~~~----~~G~~~s~~~a~l~~~~L~t----  246 (364)
T PRK07269        183 -PI----E-LGADIVLHSATKYLSGHNDVLAGVV--VTNDLELYEKLFYNLN----TTGAVLSPFDSYLLMRGLKT----  246 (364)
T ss_pred             -ch----h-hCCcEEEecCceeccCCCcccceEE--EeCcHHHHHHHHHHHH----HhCCCCCHHHHHHHHcCCCc----
Confidence             11    1 13458999999999755532 3554  3556675555542211    11123344444444433332    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhc-------------ccEEEc
Q 012647          363 DEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNK-------------WHVYMT  429 (459)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~-------------~gI~v~  429 (459)
                            +....++.+++...+.+.|+ ..+. -...++++.||++.|.-.+.+.+.++++.             ..+.+.
T Consensus       247 ------L~~r~~~~~~na~~~a~~L~-~~p~-v~~v~ypg~gg~~sf~~~~~~~~~~f~~~l~~~~~~~slG~~~sl~~~  318 (364)
T PRK07269        247 ------LSLRMERSTANAQEVVAFLK-KSPA-VKEVLYTGKGGMISFKVADETRIPHILNSLKVFTFAESLGGVESLITY  318 (364)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHH-hCCC-ccEEeCCCcCcEEEEEECCHHHHHHHHHhCCcceEccCCCCcCeEeeC
Confidence                  45666677777888888887 6531 01223467788887652233333333322             122333


Q ss_pred             CC---------------C------cEEEccCChhhHHHHHHHHHHHHh
Q 012647          430 KD---------------G------RISLAGLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       430 ~g---------------g------Ris~~~~~~e~i~~~~~~l~~~~~  456 (459)
                      |.               |      |+|++-   |+.+.+++-|.++++
T Consensus       319 p~~~~~~~~~~~~r~~~Gi~~~liRlsvGl---E~~~dli~dl~~al~  363 (364)
T PRK07269        319 PTTQTHADIPAEVRHSYGLTDDLLRLSIGI---EDARDLIADLKQALE  363 (364)
T ss_pred             CcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHhc
Confidence            32               1      999975   677888888887764

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.84  E-value=2.1e-18  Score=171.76  Aligned_cols=339  Identities=13%  Similarity=-0.002  Sum_probs=198.1

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...+|+..|..-..-|..  +|.|.+++.+.++... + +.+.. ..+....+++.+......   .+.+.+  +++|+
T Consensus        39 G~~ylD~~~g~~~~~lGh~--~p~v~~ai~~q~~~~~-~-~~~~~-~~~~~~~la~~L~~~~~~---~~~v~f--~~sGs  108 (408)
T PRK04612         39 GREYLDLAAGIAVCGLGHN--DPDLVAALTEQAGKLW-H-TSNVF-YSAPPLKLAEELVTASRF---AEKVFL--CNSGT  108 (408)
T ss_pred             CCEEEEcCccHhhccCCCC--CHHHHHHHHHHHHhcc-c-ccccc-CCHHHHHHHHHHHhhCCC---CCEEEE--cCchH
Confidence            3578898877542333443  7889999988876421 1 11111 112233444444332111   267888  99999


Q ss_pred             hHHHHHHHHHHHhC--C-----CCEEEEcCCCCcchHHHhh-hCCCCee---eeeeecC--CCCCCCHHHHHHHHHcCCC
Q 012647          162 GSLRLAAALIERYF--P-----GAKVLISSPTWGNHKNIFN-DARVPWS---EYRYYDP--KTVGLDFEGMIADIKAAPG  228 (459)
Q Consensus       162 ~a~~l~~~~~~~~~--~-----gd~Vlv~~p~y~~~~~~~~-~~G~~v~---~v~~~~~--~~~~~d~e~l~~~i~~~~~  228 (459)
                      +|++.+.++...+.  .     ..+|+....+|.+...... ..|....   .-|..+.  .-.-.|++.+++.+..   
T Consensus       109 eA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---  185 (408)
T PRK04612        109 EANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMAG---  185 (408)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCCHHHHHHhhCC---
Confidence            99999988877652  1     2469999998876533222 2221100   0011000  0011378888888853   


Q ss_pred             CcEEEEeCCCCCCCCCCCC--HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc
Q 012647          229 GSFILLHGCAHNPTGIDPT--PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (459)
Q Consensus       229 ~~~~ii~~~p~NPTG~~~s--~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  306 (459)
                      .....++..|.+++|.+++  ++.+++|.++|++||+++|+||+|.+++..+   ..+..    ...+.+..+.+|||.+
T Consensus       186 ~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G---~~~a~----~~~~~~pdi~t~~K~l  258 (408)
T PRK04612        186 GDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTG---TLFAH----WQEQVTPDIVTLAKAL  258 (408)
T ss_pred             CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC---chhhh----hhcCCCCCEEEEcchh
Confidence            3344455667888886665  5689999999999999999999999887542   11111    1223445667999999


Q ss_pred             ccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          307 GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDS  386 (459)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  386 (459)
                      + +|+|+||+++   +++..+.+    .......+.+.+.+++.++...|+.-      ++  +...++.+++.+++.+.
T Consensus       259 ~-~G~piga~~~---~~~~~~~~----~~~~~~~t~~~~p~~~aaa~a~L~~~------~~--~~l~~~~~~~g~~l~~~  322 (408)
T PRK04612        259 G-GGFPIGAMLA---GPKVAETM----QFGAHGTTFGGNPLAAAVARVALRKL------AS--PQIAANVARQSAALRAG  322 (408)
T ss_pred             c-CCCceEEEEE---CHHHHhhh----cCCCcCCCCCCCHHHHHHHHHHHHHH------Hh--ccHHHHHHHHHHHHHHH
Confidence            9 8999999865   66633333    22222223345566666665554311      01  24455666666666666


Q ss_pred             HhhccCCCC-CcccccCCcceeee--cC-C---CHHHHHHHHhcccEEEcCCC----cEEEc-cCChhhHHHHHHHHHHH
Q 012647          387 LSAKDKSGK-DWSFILRQIGMFSF--TG-L---NKAQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAIIDS  454 (459)
Q Consensus       387 L~~~~g~~~-~~~~~~~~~g~f~~--~~-l---~~~~~~~ll~~~gI~v~~gg----Ris~~-~~~~e~i~~~~~~l~~~  454 (459)
                      |+ ++.... .+..+...|.++..  .. .   ..++.+.+. ++||.+.+.|    |+... ..+++++++++++|.++
T Consensus       323 l~-~l~~~~~~i~~vrg~Gl~~~i~~~~~~~~~a~~i~~~l~-~~Gvlv~~~g~~~lRl~Ppl~it~eeid~~l~~l~~~  400 (408)
T PRK04612        323 LE-ALNAEFGVFAQVRGRGLMLGAVLAPAHAGQAGAILDLAA-EHGLLLLQAGPDVLRFVPALNLTDAELADGLARLRLA  400 (408)
T ss_pred             HH-HHHhhCCCeeeeeccceEEEEEecCchhhHHHHHHHHHH-HCCeEEeeCCCCEEEEcCCccCCHHHHHHHHHHHHHH
Confidence            66 542100 01223444433321  11 1   112344444 4699998765    66532 23899999999999999


Q ss_pred             Hhhc
Q 012647          455 YHNV  458 (459)
Q Consensus       455 ~~~~  458 (459)
                      +.++
T Consensus       401 l~~~  404 (408)
T PRK04612        401 LADY  404 (408)
T ss_pred             HHHH
Confidence            8753

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.84  E-value=2.8e-18  Score=168.83  Aligned_cols=219  Identities=12%  Similarity=0.076  Sum_probs=151.7

Q ss_pred             CCCCC--CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh---
Q 012647          120 KEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF---  194 (459)
Q Consensus       120 ~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~---  194 (459)
                      +.|+.  ..+...|+++||++..+        +++++  ++||++|+..+  +.+.+.+||+|++++|.|.++...+   
T Consensus        53 ~~Y~r~~npt~~~Le~~iA~le~~--------~~~~~--~~sG~~Ai~~~--l~all~~GD~Vvv~~~~Y~~t~~l~~~~  120 (394)
T PRK09028         53 MFYGRRGTPTHFAFQAAIVELEGG--------AGTAL--YPSGAAAISNA--LLSFLKAGDHLLMVDSCYEPTRDLCDKI  120 (394)
T ss_pred             ceecCCCCchHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEECCCcHHHHHHHHHh
Confidence            45655  34557999999998532        35777  89999999998  5556889999999999998776543   


Q ss_pred             -hhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCC
Q 012647          195 -NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG  273 (459)
Q Consensus       195 -~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~  273 (459)
                       ...|+++..++..       |.+.+++++++   +++++++++|+||||.+   .++++|+++|+++|+++++|++|..
T Consensus       121 l~~~Gi~v~~v~~~-------~~e~l~~~l~~---~TklV~lespsNPtg~v---~dl~~I~~la~~~g~~lvvD~t~a~  187 (394)
T PRK09028        121 LKGFGIETTYYDPM-------IGEGIRELIRP---NTKVLFLESPGSITMEV---QDVPTLSRIAHEHDIVVMLDNTWAS  187 (394)
T ss_pred             hhhcceEEEEECCC-------CHHHHHHhcCc---CceEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCccc
Confidence             4577777766431       45778888765   78999999999999988   8999999999999999999999865


Q ss_pred             CCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHH
Q 012647          274 FASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIV  352 (459)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (459)
                      ....  .    ++     ..+-++++.|.+|.++-+| ...|++   +.+++..+.+.....    ......+...+..+
T Consensus       188 p~~~--~----Pl-----~~GaDivv~S~tK~l~Gh~d~~~G~~---~~~~~~~~~l~~~~~----~~G~~~~p~~a~l~  249 (394)
T PRK09028        188 PINS--R----PF-----EMGVDISIQAATKYIVGHSDVMLGTA---TANEKHWDQLREHSY----LMGQCTSPDDVYLA  249 (394)
T ss_pred             cccC--C----cc-----ccCceEEEEeCCeEecCCCCEEEEEE---ECCHHHHHHHHHHHH----hcCCCCCHHHHHHH
Confidence            3311  1    11     2346799999999995444 545543   346664444433221    11223344333333


Q ss_pred             HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          353 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       353 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                      ..-|+.          +..+.++..++...+.+.|+ +.+
T Consensus       250 ~rgl~T----------L~lR~~~~~~na~~la~~L~-~~p  278 (394)
T PRK09028        250 MRGLRT----------LGVRLAQHEKNALKVANWLA-TRP  278 (394)
T ss_pred             HcccCc----------HHHHHHHHHHHHHHHHHHHh-cCC
Confidence            333332          45566777778888888888 653

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.84  E-value=1.6e-18  Score=171.87  Aligned_cols=212  Identities=16%  Similarity=0.129  Sum_probs=141.7

Q ss_pred             ccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcch----HHHhhhCCCCee
Q 012647          127 GLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH----KNIFNDARVPWS  202 (459)
Q Consensus       127 g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~----~~~~~~~G~~v~  202 (459)
                      -..+|++.+|++...       +..++   +++|+.++.++  + ..+.+||+|++++|.|+..    ...++..|++++
T Consensus        55 ~~~~le~~lA~l~g~-------~~~v~---~~sG~~ai~~~--l-~~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~  121 (390)
T PRK08064         55 TREALEDIIAELEGG-------TKGFA---FASGMAAISTA--F-LLLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHT  121 (390)
T ss_pred             hHHHHHHHHHHHhCC-------CCeEE---ECCHHHHHHHH--H-HHhCCCCEEEEccCccchHHHHHHHHHHHcCCEEE
Confidence            457899999999643       23454   46667788776  3 3578999999999999743    244567899999


Q ss_pred             eeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCC
Q 012647          203 EYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDND  282 (459)
Q Consensus       203 ~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~  282 (459)
                      .++..       |++.+++++++   +++++++++|+||||.+   .++++|.++|+++|+++|+|++|.......    
T Consensus       122 ~v~~~-------d~~~l~~~l~~---~tklV~l~~p~NptG~~---~dl~~I~~la~~~g~~vvvD~a~~~~~~~~----  184 (390)
T PRK08064        122 FVDMT-------NLEEVAQNIKP---NTKLFYVETPSNPLLKV---TDIRGVVKLAKAIGCLTFVDNTFLTPLLQK----  184 (390)
T ss_pred             EECCC-------CHHHHHHhcCC---CceEEEEECCCCCCcEe---ccHHHHHHHHHHcCCEEEEECCCCcccccC----
Confidence            88762       68899988875   78899999999999999   577889999999999999999987654211    


Q ss_pred             hhHHHHHHhcCCeEEEEEcCCcCcc-cCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhh
Q 012647          283 ASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPAL  361 (459)
Q Consensus       283 ~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~  361 (459)
                        .+     ..+.++++.|+||.++ .+|...|+++  ..+++..+++....    .......+...+..   .+.+-  
T Consensus       185 --~~-----~~g~Divv~S~tK~~~G~~~~laG~~v--~~~~~~~~~l~~~~----~~~g~~~~~~~a~l---~~~gl--  246 (390)
T PRK08064        185 --PL-----DLGADVVLHSATKFLAGHSDVLAGLAV--VKDEELAQKLYFLQ----NSFGAVLGVQDCWL---VLRGL--  246 (390)
T ss_pred             --ch-----hhCCcEEEeecceeccCCccceeEEEE--eCCHHHHHHHHHHH----HhcCCCCCHHHHHH---HHccc--
Confidence              11     1235688999999985 3445567763  45566444443322    22111222222222   22211  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          362 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                           +.+....++..++...+.+.|+ +.+
T Consensus       247 -----~tl~~R~~~~~~~a~~la~~L~-~~~  271 (390)
T PRK08064        247 -----KTLHVRLEHSSETANKIALYLQ-EHP  271 (390)
T ss_pred             -----CcHHHHHHHHHHHHHHHHHHHh-cCC
Confidence                 1234555666667777777777 553

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.84  E-value=1.6e-18  Score=173.49  Aligned_cols=159  Identities=18%  Similarity=0.131  Sum_probs=125.1

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcch----HHHhhhCCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH----KNIFNDARV  199 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~----~~~~~~~G~  199 (459)
                      +..-..+|++.+|++...        +..++  +++|+.++..+  +...+.+||+|+++.+.|+..    ...++..|+
T Consensus        55 ~~p~~~~le~~lA~l~g~--------~~~v~--~~sG~~Ai~~a--l~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~  122 (418)
T TIGR01326        55 MNPTTDVLEQRIAALEGG--------VAALA--VASGQAAITYA--ILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGI  122 (418)
T ss_pred             CChhHHHHHHHHHHHhCC--------CeEEE--EccHHHHHHHH--HHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCc
Confidence            445568999999999643        34556  79999999888  445578999999999988643    344667899


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~  279 (459)
                      +++.++.  +     |++++++++++   +++++++++|+||||.+.   ++++|+++|+++|+++|+|++|......  
T Consensus       123 ~v~~v~~--~-----d~~~l~~~l~~---~t~~V~le~p~NPtg~v~---dl~~I~~la~~~~i~livD~t~~~~~~~--  187 (418)
T TIGR01326       123 EVRFVDP--D-----DPEEFEKAIDE---NTKAVFAETIGNPAINVP---DIEAIAEVAHAHGVPLIVDNTFATPYLC--  187 (418)
T ss_pred             EEEEECC--C-----CHHHHHHhcCc---CCeEEEEECCCCCCCeec---CHHHHHHHHHHcCCEEEEECCCchhhcC--
Confidence            9988874  1     78999998875   678888899999999994   5788999999999999999997633211  


Q ss_pred             CCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012647          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (459)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (459)
                        .  .   +  ..+.++++.|+||.++.+|+|+||+++
T Consensus       188 --~--~---l--~~g~Divv~S~sK~l~g~G~~lGg~v~  217 (418)
T TIGR01326       188 --R--P---I--DHGADIVVHSATKYIGGHGTAIGGVIV  217 (418)
T ss_pred             --C--c---h--hcCCeEEEECccccccCCccceEEEEE
Confidence              0  1   1  124689999999999999999999965

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.83  E-value=2.8e-18  Score=171.71  Aligned_cols=337  Identities=11%  Similarity=0.057  Sum_probs=195.1

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCC--CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...+|+..|..-..-++.  +|.|.+++.+.++....  ..+.+.+...++-+.+++......     .+.+.+  +++
T Consensus        39 G~~ylD~~~g~~~~~lGh~--~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~-----~~~v~f--~~S  109 (425)
T PRK07495         39 GRRYIDFAAGIAVVNTGHR--HPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNALVPGDF-----AKKTIF--VTT  109 (425)
T ss_pred             CCEEEEccccHHhhccCCC--CHHHHHHHHHHHhhccCcccCccCCHHHHHHHHHHHHhCCCCC-----CCEEEE--CCc
Confidence            4578898887542233443  78899999888764210  112233333445555555432110     257888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhh-CC-------------CCeeeeeeecCCCCCCC----HHHHHH
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-AR-------------VPWSEYRYYDPKTVGLD----FEGMIA  221 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~G-------------~~v~~v~~~~~~~~~~d----~e~l~~  221 (459)
                      |++|++.+.++........+|+....+|.+....... .|             ..++.+|...+ ..+.+    ++.+++
T Consensus       110 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~l~~  188 (425)
T PRK07495        110 GAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVE-LHGVSVEQSLAALDK  188 (425)
T ss_pred             hHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcc-cccccHHHHHHHHHH
Confidence            9999999988877665567899999888765322111 11             12333444211 11233    444566


Q ss_pred             HHHc--CCCCcEE-EEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEE
Q 012647          222 DIKA--APGGSFI-LLHGCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (459)
Q Consensus       222 ~i~~--~~~~~~~-ii~~~p~NPTG-~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i  297 (459)
                      .+..  .+++..+ ++-+..+| +| ..++++.+++|.++|++||+++|+||+|.+++..+   ..+...    ..+...
T Consensus       189 ~~~~~~~~~~iaavi~EPv~g~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G---~~~a~~----~~gv~p  260 (425)
T PRK07495        189 LFKADVDPQRVAAIIIEPVQGE-GGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTG---KLFAME----HHEVAA  260 (425)
T ss_pred             HHHhccCCCceEEEEECCccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCC---Cceeec----ccCCCC
Confidence            6642  1223444 44444566 88 45799999999999999999999999999886542   111111    112223


Q ss_pred             EEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHH---HhCChhhHHHHHHHHHHHHH
Q 012647          298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVAN---VVGNPALFDEWKAEMEMMAG  374 (459)
Q Consensus       298 ~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~L~~~~~~~~~~~~~~~~~~  374 (459)
                      -+.+|||.++ +|+|+|++++   +++..+.    +.......+.+.+.+++.++..   ++++++           ..+
T Consensus       261 Di~tlsK~l~-~G~pigav~~---~~~i~~~----~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~-----------l~~  321 (425)
T PRK07495        261 DLTTMAKGLA-GGFPLAAVTG---RAEIMDA----PGPGGLGGTYGGNPLGIAAAHAVLDVIEEED-----------LCE  321 (425)
T ss_pred             CEEeehhhhc-CCccceEEEE---cHHHHhc----cCCCCcCCCCCCCHHHHHHHHHHHHHHHhch-----------HHH
Confidence            3568999999 8999999876   7774333    3222222233455555554433   333322           233


Q ss_pred             HHHHHHHHHHHHHhhccC--CCCCcccccCCcceeeecCCC--------H----HHHHHHHhcccEEEcCCC------cE
Q 012647          375 RIKNVRQKLFDSLSAKDK--SGKDWSFILRQIGMFSFTGLN--------K----AQSDNMTNKWHVYMTKDG------RI  434 (459)
Q Consensus       375 ~~~~~~~~l~~~L~~~~g--~~~~~~~~~~~~g~f~~~~l~--------~----~~~~~ll~~~gI~v~~gg------Ri  434 (459)
                      +.+++.+++.+.|+ ++-  .|. +..+... |+++|+.+.        .    .+.+.+++ +||.+.+.|      ||
T Consensus       322 ~~~~~g~~l~~~L~-~l~~~~~~-i~~vrG~-Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~g~~~~~~r~  397 (425)
T PRK07495        322 RANQLGNRLKQRLA-SLRETVPE-IADIRGP-GFMNAVEFNDADSGLPSAEFANRVRLKALE-KGLILLTCGVHGNVIRF  397 (425)
T ss_pred             HHHHHHHHHHHHHH-HHHhhCCC-eeeeecC-ceEEEEEEecCCCCCccHHHHHHHHHHHHH-CCeEEeecCCCCCEEEE
Confidence            34444444444443 320  110 1112222 677776441        1    22344455 699986532      66


Q ss_pred             EEc-cCChhhHHHHHHHHHHHHhhcC
Q 012647          435 SLA-GLSLAKCEYLADAIIDSYHNVS  459 (459)
Q Consensus       435 s~~-~~~~e~i~~~~~~l~~~~~~~~  459 (459)
                      .-. .++++++++++++|.+++++++
T Consensus       398 ~Ppl~it~~~id~~~~~l~~~l~~~~  423 (425)
T PRK07495        398 LAPITIQDDVFAEALDILEASILEAS  423 (425)
T ss_pred             eCCCccCHHHHHHHHHHHHHHHHHHh
Confidence            532 2389999999999999998764

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.83  E-value=2e-18  Score=172.66  Aligned_cols=158  Identities=19%  Similarity=0.150  Sum_probs=123.9

Q ss_pred             CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcc----hHHHhhhCCCC
Q 012647          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGN----HKNIFNDARVP  200 (459)
Q Consensus       125 ~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~----~~~~~~~~G~~  200 (459)
                      ..-...|.+.+|++...        +..++  +++|++++..+  +.+.+.+||+|+++.+.|+.    +...++..|++
T Consensus        63 ~p~~~~Le~~lA~leg~--------~~al~--~~sG~~Ai~~a--l~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~  130 (431)
T PRK08248         63 NPTTDVFEKRIAALEGG--------IGALA--VSSGQAAITYS--ILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGIT  130 (431)
T ss_pred             CchHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEE
Confidence            34467888999998643        34556  79999999988  55567899999999998864    33456678999


Q ss_pred             eeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCC
Q 012647          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (459)
Q Consensus       201 v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~  280 (459)
                      ++.++.       .|++.+++++++   +++++++++|+||||.+.+   +++|+++|+++|+++|+|++|... ..   
T Consensus       131 v~~vd~-------~d~e~l~~ai~~---~tklV~l~sp~NPtG~v~d---i~~I~~la~~~gi~vIvD~t~a~~-~~---  193 (431)
T PRK08248        131 VKFVDP-------SDPENFEAAITD---KTKALFAETIGNPKGDVLD---IEAVAAIAHEHGIPLIVDNTFASP-YL---  193 (431)
T ss_pred             EEEECC-------CCHHHHHHhcCC---CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEeCCCCcc-cc---
Confidence            988876       278999999875   6788888999999999954   678999999999999999997521 11   


Q ss_pred             CChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012647          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (459)
Q Consensus       281 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (459)
                        ...+     ..+.++++.|++|.+|.+|.++|++++
T Consensus       194 --~~pl-----~~gaDivv~S~tK~lgg~g~~~Gg~v~  224 (431)
T PRK08248        194 --LRPI-----EHGADIVVHSATKFIGGHGTSIGGVIV  224 (431)
T ss_pred             --CChh-----HcCCCEEEEcCccccCCCCCceEEEEE
Confidence              0011     234678889999999999999999865

>PRK05939 hypothetical protein; Provisional

Probab=99.83  E-value=5.9e-18  Score=167.72  Aligned_cols=154  Identities=16%  Similarity=0.146  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HhhhCCCCeeeee
Q 012647          129 AAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVPWSEYR  205 (459)
Q Consensus       129 ~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~G~~v~~v~  205 (459)
                      .+|++.++++..+.       ..++   +++|+.|+..+  +...+.+||+|+++++.|+.+..   .++..|++++.++
T Consensus        50 ~~lE~~la~leg~~-------~~v~---~ssG~~Ai~~~--l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~  117 (397)
T PRK05939         50 AALEAKITKMEGGV-------GTVC---FATGMAAIAAV--FLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVD  117 (397)
T ss_pred             HHHHHHHHHHhCCC-------eEEE---eCCHHHHHHHH--HHHHcCCCCEEEECCCccccHHHHHHHHHhcCCEEEEEC
Confidence            48999999986442       3344   46678999887  44557899999999999976544   4567899988887


Q ss_pred             eecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhH
Q 012647          206 YYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASS  285 (459)
Q Consensus       206 ~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~  285 (459)
                      .       .|++++++++++   +++++++++|+||||.+   .++++|+++|+++|+++|+|++|.....  .+  .  
T Consensus       118 ~-------~d~e~l~~~l~~---~tklV~vesp~NptG~v---~dl~~I~~la~~~gi~livD~t~a~~~~--~~--~--  178 (397)
T PRK05939        118 A-------TDVQNVAAAIRP---NTRMVFVETIANPGTQV---ADLAGIGALCRERGLLYVVDNTMTSPWL--FR--P--  178 (397)
T ss_pred             C-------CCHHHHHHhCCC---CCeEEEEECCCCCCCCH---HhHHHHHHHHHHcCCEEEEECCcccccc--cC--c--
Confidence            5       278999999875   78899999999999999   8899999999999999999999754321  10  0  


Q ss_pred             HHHHHhcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012647          286 VRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (459)
Q Consensus       286 ~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (459)
                           ...+.++++.|+||.++.+|.++|++++
T Consensus       179 -----~~~gaDivv~S~sK~~~g~g~~igg~v~  206 (397)
T PRK05939        179 -----KDVGASLVINSLSKYIAGHGNALGGAVT  206 (397)
T ss_pred             -----cccCCEEEEecCeecccCCCCeEEEEEe
Confidence                 1124679999999999989999999854

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.83  E-value=4.6e-18  Score=161.51  Aligned_cols=327  Identities=15%  Similarity=0.128  Sum_probs=212.1

Q ss_pred             CCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeec
Q 012647           80 DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (459)
Q Consensus        80 ~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (459)
                      +.+..-|||..|.-.+..++.  +|.+.+++++.+++-  ..+.| .+.-..+|-+.+++...       ..+.|++  +
T Consensus        39 ~~G~~YlDf~~Giav~~lGH~--hP~iv~al~~Q~~kl~h~sn~~-~~~~~~~la~~L~~~s~-------~~d~vff--~  106 (404)
T COG4992          39 QQGREYLDFAAGIAVNNLGHC--HPALVEALKEQAEKLWHVSNLF-YNEPQAELAEKLVELSP-------FADRVFF--C  106 (404)
T ss_pred             CCCCEeeeeccceeeeccCCC--CHHHHHHHHHHHHHhhhccccc-CChHHHHHHHHHHhhCc-------cccEEEE--c
Confidence            345688999999876666664  799999998876541  12334 22233344444444421       1588999  9


Q ss_pred             ccchhHHHHHHHHHHHhCC---CCEEEEcCCCCcchHHHhhhCCC-------------CeeeeeeecCCCCCCCHHHHHH
Q 012647          158 LSGTGSLRLAAALIERYFP---GAKVLISSPTWGNHKNIFNDARV-------------PWSEYRYYDPKTVGLDFEGMIA  221 (459)
Q Consensus       158 ~ggt~a~~l~~~~~~~~~~---gd~Vlv~~p~y~~~~~~~~~~G~-------------~v~~v~~~~~~~~~~d~e~l~~  221 (459)
                      ++|+||++.+.++.+.+..   ..+|+...-+|.+-.-..-+.+.             .++.+|+       -|++++++
T Consensus       107 NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpf-------nDi~al~~  179 (404)
T COG4992         107 NSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPF-------NDIEALEA  179 (404)
T ss_pred             CCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCC-------CCHHHHHH
Confidence            9999999999999887764   34788888777632211111111             2334444       28999999


Q ss_pred             HHHcCCCCcEEEEeCCCCCCCCCCCCH-HHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEE
Q 012647          222 DIKAAPGGSFILLHGCAHNPTGIDPTP-EQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (459)
Q Consensus       222 ~i~~~~~~~~~ii~~~p~NPTG~~~s~-~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  300 (459)
                      ++++   .+..+++-..+-..|+++.+ +-++++.++|++||+++|.||+..+++-.   .+.+....+ .-.++++   
T Consensus       180 ai~~---~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRT---Gk~fA~e~~-gV~PDI~---  249 (404)
T COG4992         180 AIDE---DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRT---GKLFAYEHY-GVEPDIL---  249 (404)
T ss_pred             Hhcc---CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCcc---chHHHHHHh-CCCCCEE---
Confidence            9997   88889888889999987654 55999999999999999999998888743   344544333 3345555   


Q ss_pred             cCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHH---hCChhhHHHHHHHHHHHHHHHH
Q 012647          301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV---VGNPALFDEWKAEMEMMAGRIK  377 (459)
Q Consensus       301 S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---L~~~~~~~~~~~~~~~~~~~~~  377 (459)
                      ++.|.+| .|+.||.+.+   .+.    +.+.+.......+.+-+.++..++...   +.++           ...++.+
T Consensus       250 tlaK~Lg-GG~PigA~la---~~~----~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~e-----------~ll~~v~  310 (404)
T COG4992         250 TLAKALG-GGFPIGAMLA---TEE----IASAFTPGDHGSTFGGNPLACAVALAVLEVLLEE-----------GLLENVR  310 (404)
T ss_pred             Eeecccc-CCccceeeEE---chh----hhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcch-----------hHHHHHH
Confidence            6899999 8999999965   444    333344333334444455555554333   3333           3345555


Q ss_pred             HHHHHHHHHHhhccCCCCCcccccCCcceeeecCC----C---HHHHHHHHhcccEEEcCCC----cEEEcc-CChhhHH
Q 012647          378 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----N---KAQSDNMTNKWHVYMTKDG----RISLAG-LSLAKCE  445 (459)
Q Consensus       378 ~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l----~---~~~~~~ll~~~gI~v~~gg----Ris~~~-~~~e~i~  445 (459)
                      ++-+++.+.|+ ++.-+  +.++..--|.-+++|+    +   .++++.+.+ +||.+.+.|    |+.-.- +++|+++
T Consensus       311 ~~g~~~~~~L~-~l~~~--~~~v~~vRG~GLmiGiel~~~~~a~~~~~~~~~-~gvL~~~a~~~ViR~~PpL~i~~eei~  386 (404)
T COG4992         311 EKGEYLLQRLR-ELKRR--YPLVKEVRGRGLMIGIELKEPYRARDIVRALRE-EGVLVLPAGPNVIRFLPPLVITEEEID  386 (404)
T ss_pred             HHHHHHHHHHH-HHhhc--CCceeeeecceeEEEEEecCcccHHHHHHHHHH-CCeEEecCCCCeEEecCCccCCHHHHH
Confidence            66666666666 54211  1122222233333332    2   345666666 599998877    776443 3899999


Q ss_pred             HHHHHHHHHHhhc
Q 012647          446 YLADAIIDSYHNV  458 (459)
Q Consensus       446 ~~~~~l~~~~~~~  458 (459)
                      +++++|.++++.+
T Consensus       387 ~~~~~l~~~l~~~  399 (404)
T COG4992         387 EALDALERALAAA  399 (404)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999864

>PRK05968 hypothetical protein; Provisional

Probab=99.83  E-value=3.5e-18  Score=169.48  Aligned_cols=212  Identities=14%  Similarity=0.108  Sum_probs=142.5

Q ss_pred             cccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcch----HHHhhhCCCCe
Q 012647          126 EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH----KNIFNDARVPW  201 (459)
Q Consensus       126 ~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~----~~~~~~~G~~v  201 (459)
                      .-..+|++++|++....       ..++   +++|+.++.++  +...+.+||+|+++.+.|...    ...+...|+++
T Consensus        63 p~~~~le~~lA~l~g~~-------~av~---~~sG~~Ai~~a--l~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v  130 (389)
T PRK05968         63 PTVRAFEEMLAKLEGAE-------DARG---FASGMAAISST--VLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEV  130 (389)
T ss_pred             hhHHHHHHHHHHHhCCC-------cEEE---ECCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceE
Confidence            34679999999996542       3344   57778898887  445578999999999999753    34566789998


Q ss_pred             eeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCC
Q 012647          202 SEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN  281 (459)
Q Consensus       202 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~  281 (459)
                      +.++.       .|++.+++++ +   +++++++++|.||++.+   .++++|+++|++||+++|+|++|....+..   
T Consensus       131 ~~vd~-------~d~~~l~~~i-~---~tklV~ie~pt~~~~~~---~dl~~i~~la~~~gi~vivD~a~a~~~~~~---  193 (389)
T PRK05968        131 DYVDG-------RDEEAVAKAL-P---GAKLLYLESPTSWVFEL---QDVAALAALAKRHGVVTMIDNSWASPVFQR---  193 (389)
T ss_pred             EEeCC-------CCHHHHHHhc-c---cCCEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCCcchhccC---
Confidence            88864       2788998887 3   56677776666665555   999999999999999999999986654321   


Q ss_pred             ChhHHHHHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChh
Q 012647          282 DASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPA  360 (459)
Q Consensus       282 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  360 (459)
                         ++    . ...++++.|+||.++.+| .+.|+++.   +++.++++.......   .....+...+.++...|+.  
T Consensus       194 ---p~----~-~g~Divv~S~tK~l~g~~~~~gG~i~~---~~~~~~~l~~~~~~~---~g~~~~~~~A~~~l~~L~t--  257 (389)
T PRK05968        194 ---PI----T-LGVDLVIHSASKYLGGHSDTVAGVVAG---SKEHIARINAEAYPY---LGAKLSPFEAWLLLRGLRT--  257 (389)
T ss_pred             ---ch----h-cCCcEEEeeccccccCCCCeEEEEEEE---CHHHHHHHHHHHHHh---CCCCCChHHHHHHHcccCc--
Confidence               11    1 123578889999998755 46787754   777666555432221   1123333443444333332  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          361 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                              +....++..+..+.+.+.|+ ++
T Consensus       258 --------l~~r~~~~~~~a~~la~~L~-~~  279 (389)
T PRK05968        258 --------LPLRMKAHEASALEIARRLK-AH  279 (389)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHH-hC
Confidence                    34444555556777777787 65

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.83  E-value=1.4e-17  Score=165.46  Aligned_cols=197  Identities=17%  Similarity=0.074  Sum_probs=138.8

Q ss_pred             cCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH-hCCCCE
Q 012647          101 YVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAK  179 (459)
Q Consensus       101 ~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~-~~~gd~  179 (459)
                      .+.++-.+++.+.+..+.   |.......+|++++++++...        +.++  ++||++|+.++  +.+. +.+||+
T Consensus         7 ~~~~~~~~~v~~~~~~~~---~~~g~~~~~le~~la~~~g~~--------~~v~--~~sgt~al~~~--l~al~~~~Gd~   71 (380)
T TIGR03588         7 SIDQDDIDAVVEVLKSDF---LTQGPTVPAFEEALAEYVGAK--------YAVA--FNSATSALHIA--CLALGVGPGDR   71 (380)
T ss_pred             CCCHHHHHHHHHHHhcCC---ccCChhHHHHHHHHHHHHCCC--------eEEE--EcCHHHHHHHH--HHHcCCCCCCE
Confidence            345666777877775532   444556789999999997542        3444  57899999998  3333 569999


Q ss_pred             EEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCC-CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 012647          180 VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP-GGSFILLHGCAHNPTGIDPTPEQWEKIADVI  258 (459)
Q Consensus       180 Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~-~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~  258 (459)
                      |+++.|+|..+...++..|++++.++++ ++++.+|++.+++.+++.+ ++++++++   .|++|..   .++++|.++|
T Consensus        72 Viv~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~d~~~l~~~i~~~~~~~t~~v~~---~~~~G~~---~~~~~i~~l~  144 (380)
T TIGR03588        72 VWTTPITFVATANCALYCGAKVDFVDID-PDTGNIDEDALEKKLAAAKGKLPKAIVP---VDFAGKS---VDMQAIAALA  144 (380)
T ss_pred             EEeCCcchHHHHHHHHHcCCEEEEEecC-CCcCCcCHHHHHHHhhcccCCCceEEEE---eCCCCcc---CCHHHHHHHH
Confidence            9999999999999999999999999985 3467899999999998310 25677763   5689987   5688999999


Q ss_pred             HhcCCeeEEeccCCCCC-CCCCCCChhHHHHHHhcCCeEEEEEcCC--cCcccCCCCcceEEEEeCChhHHHHHHH
Q 012647          259 QEKNHIPFFDVAYQGFA-SGSLDNDASSVRLFATRGMELLVAQSYS--KNLGLYAERIGAMNVVCSSSDLAARVKS  331 (459)
Q Consensus       259 ~~~~~~ii~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~RiG~~~~v~~~~~~~~~~~~  331 (459)
                      ++||++||+|+++.... +++   ....  . ..  ..++.+.||+  |.++. | .-|++  ++.+++..+++..
T Consensus       145 ~~~~~~lI~D~a~a~g~~~~~---~~~g--~-~~--~~d~~~~S~~~~K~~~~-~-~GG~v--~~~~~~~~~~~~~  208 (380)
T TIGR03588       145 KKHGLKIIEDASHALGAEYGG---KPVG--N-CR--YADATVFSFHPVKIITT-A-EGGAV--TTNDEELAERMRL  208 (380)
T ss_pred             HHcCCEEEEECCCcccCccCC---EeCC--C-cc--ccceEEEecCCCCcccc-c-CceEE--EECCHHHHHHHHH
Confidence            99999999999965432 221   1111  0 00  1256667776  88874 3 24555  4667776555543

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.82  E-value=3.4e-19  Score=170.57  Aligned_cols=172  Identities=15%  Similarity=0.020  Sum_probs=130.2

Q ss_pred             CCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCe
Q 012647          122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPW  201 (459)
Q Consensus       122 Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v  201 (459)
                      +.|..-+.++++.+|+++..       ++-+++  |+|+|+++..+  +.+.+.+||+|+++.|+|..+...+...|+++
T Consensus        55 ~~~~g~i~~~~~~~A~~~ga-------~~~~~~--~~Gst~a~~~~--l~al~~~gd~Vlv~~~~h~s~~~~~~~~g~~~  123 (294)
T cd00615          55 LDPTGPIKEAQELAARAFGA-------KHTFFL--VNGTSSSNKAV--ILAVCGPGDKILIDRNCHKSVINGLVLSGAVP  123 (294)
T ss_pred             CCCChHHHHHHHHHHHHhCC-------CCEEEE--cCcHHHHHHHH--HHHcCCCCCEEEEeCCchHHHHHHHHHCCCEE
Confidence            33555578899999999753       244555  88999999887  55557899999999999999888899999999


Q ss_pred             eeeeeecCCC----CCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCC-CC
Q 012647          202 SEYRYYDPKT----VGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGF-AS  276 (459)
Q Consensus       202 ~~v~~~~~~~----~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~-~~  276 (459)
                      ++++...+..    +.+|++.+++++++. ++++++++++| ||||.++   ++++|+++|+++|+++|+||+|... .+
T Consensus       124 ~~v~~~~~~~~~~~~~i~~~~l~~~l~~~-~~~k~v~l~~p-~~~G~~~---dl~~I~~~~~~~g~~livDeA~~~~~~~  198 (294)
T cd00615         124 VYLKPERNPYYGIAGGIPPETFKKALIEH-PDAKAAVITNP-TYYGICY---NLRKIVEEAHHRGLPVLVDEAHGAHFRF  198 (294)
T ss_pred             EEecCccCcccCcCCCCCHHHHHHHHHhC-CCceEEEEECC-CCCCEec---CHHHHHHHHHhcCCeEEEECcchhhhcc
Confidence            9987743332    378999999999753 35677777888 7999995   5788999999999999999998753 22


Q ss_pred             CCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEE
Q 012647          277 GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (459)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (459)
                      .+.   . ..  .....+.++++.|++|.+  +|++.|+++
T Consensus       199 ~~~---~-~~--~~~~~~~div~~S~hK~l--~g~~~~~~l  231 (294)
T cd00615         199 HPI---L-PS--SAAMAGADIVVQSTHKTL--PALTQGSMI  231 (294)
T ss_pred             Ccc---c-Cc--chhhcCCcEEEEchhccc--chHhHHHHH
Confidence            210   0 10  112235789999999985  678776663

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.82  E-value=6.2e-18  Score=167.47  Aligned_cols=193  Identities=18%  Similarity=0.132  Sum_probs=134.1

Q ss_pred             CcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEE
Q 012647          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL  181 (459)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vl  181 (459)
                      +.+.-.+++.+.+..+.  .|+    ..++++++.+++....+    .+++++  ++||++++.++...+ .+.+||+|+
T Consensus         9 ~~~~~~~~~~~~l~~~~--~~g----~~~~~~~~e~~la~~~g----~~~~v~--~~sgt~al~~~l~~~-~~~~Gd~Vi   75 (375)
T PRK11706          9 VVGTELDYIQQAMSSGK--LCG----DGGFTRRCQQWLEQRFG----SAKVLL--TPSCTAALEMAALLL-DIQPGDEVI   75 (375)
T ss_pred             CCHHHHHHHHHHHHcCC--ccC----CCHHHHHHHHHHHHHhC----CCeEEE--ECCHHHHHHHHHHHh-CCCCCCEEE
Confidence            35555677777775542  232    22344444444333333    367888  999999998873221 256999999


Q ss_pred             EcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc
Q 012647          182 ISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK  261 (459)
Q Consensus       182 v~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~  261 (459)
                      ++.|+|..+...+...|++++.++++ ++++.+|++++++++++   +++++++   .|+||..   .++++|.++|++|
T Consensus        76 v~~~t~~~~~~~~~~~G~~~v~~d~d-~~~~~~d~~~le~~i~~---~tk~i~~---~~~~G~~---~~~~~i~~la~~~  145 (375)
T PRK11706         76 MPSYTFVSTANAFVLRGAKIVFVDIR-PDTMNIDETLIEAAITP---KTRAIVP---VHYAGVA---CEMDTIMALAKKH  145 (375)
T ss_pred             ECCCCcHHHHHHHHHcCCEEEEEecC-CCcCCcCHHHHHHhcCC---CCeEEEE---eCCCCCc---cCHHHHHHHHHHc
Confidence            99999999999999999999999985 44678999999999875   6777774   3679988   6678899999999


Q ss_pred             CCeeEEeccCCCCC-CCCCCCChhHHHHHHhcCCeEEEEEcCC--cCcccCCCCcceEEEEeCChhHHHHHHH
Q 012647          262 NHIPFFDVAYQGFA-SGSLDNDASSVRLFATRGMELLVAQSYS--KNLGLYAERIGAMNVVCSSSDLAARVKS  331 (459)
Q Consensus       262 ~~~ii~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~RiG~~~~v~~~~~~~~~~~~  331 (459)
                      |++||+|++|..+. +++   .  .+    ... ..+.+.||+  |.++ +|.+.+++   +.++++.+++..
T Consensus       146 ~i~vIeD~a~a~g~~~~~---~--~~----g~~-~~~~~~Sf~~~K~l~-~g~gG~~~---~~~~~~~~~~~~  204 (375)
T PRK11706        146 NLFVVEDAAQGVMSTYKG---R--AL----GTI-GHIGCFSFHETKNYT-AGEGGALL---INDPALIERAEI  204 (375)
T ss_pred             CCEEEEECccccccccCC---e--ee----ecC-cCEEEEeCCCCcccc-ccCCeEEE---ECCHHHHHHHHH
Confidence            99999999976554 221   0  11    111 134445655  9998 58765554   457776655544

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.82  E-value=7.9e-18  Score=165.70  Aligned_cols=293  Identities=17%  Similarity=0.075  Sum_probs=183.4

Q ss_pred             HHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH-hCCCCEEEEcCCC
Q 012647          108 KAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKVLISSPT  186 (459)
Q Consensus       108 ~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~-~~~gd~Vlv~~p~  186 (459)
                      +++.+.+..+.   |.......++++.+++++..        +++++  +++||++++++.  ... +.+||+|+++.++
T Consensus         3 ~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~--------~~~~~--~~sgt~al~~~l--~~l~~~~gd~vl~~~~~   67 (352)
T cd00616           3 EAVEEVLDSGW---LTLGPKVREFEKAFAEYLGV--------KYAVA--VSSGTAALHLAL--RALGIGPGDEVIVPSFT   67 (352)
T ss_pred             HHHHHHHHcCC---ccCCHHHHHHHHHHHHHhCC--------CeEEE--ECCHHHHHHHHH--HHcCCCCCCEEEeCCcc
Confidence            44555555432   33445678999999999742        35667  789999999983  333 4699999999999


Q ss_pred             CcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeE
Q 012647          187 WGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF  266 (459)
Q Consensus       187 y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii  266 (459)
                      |..+...+...|++++.++++ ++++.+|++.+++.+++   +++++++   .||+|..   .++++|.++|+++|+++|
T Consensus        68 ~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~i~~---~~~~v~~---~~~~G~~---~~~~~i~~l~~~~~i~li  137 (352)
T cd00616          68 FVATANAILLLGATPVFVDID-PDTYNIDPELIEAAITP---RTKAIIP---VHLYGNP---ADMDAIMAIAKRHGLPVI  137 (352)
T ss_pred             hHHHHHHHHHcCCeEEEEecC-CCcCCcCHHHHHHhcCc---CCeEEEE---ECCCCCc---CCHHHHHHHHHHcCCeEE
Confidence            999999999999999999984 34688999999998864   6777775   4689988   567889999999999999


Q ss_pred             EeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCC--cCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccc-----
Q 012647          267 FDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS--KNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARP-----  339 (459)
Q Consensus       267 ~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~-----  339 (459)
                      +|+++.......   .. .    .... ..+.+.||+  |.++  +.+.|++  ++.+++..+++..........     
T Consensus       138 ~D~a~~~g~~~~---~~-~----~~~~-~d~~~~S~~~~K~~~--~~~gg~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (352)
T cd00616         138 EDAAQALGATYK---GR-K----VGTF-GDAGAFSFHPTKNLT--TGEGGAV--VTNDEELAERARLLRNHGRDRDRFKY  204 (352)
T ss_pred             EECCCCCCCeEC---CE-E----cccC-cceeEEcCCCCCCCc--ccCceEE--EECCHHHHHHHHHHHHcCCCCCCCcc
Confidence            999965322110   00 0    0111 245667766  8874  3335666  455566555443321111000     


Q ss_pred             ------cccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCc------cee
Q 012647          340 ------MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQI------GMF  407 (459)
Q Consensus       340 ------~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~------g~f  407 (459)
                            .....+.+...++...          .+.+++..++.+++.+++.+.|. +++   ++++..+..      .++
T Consensus       205 ~~~~~~~~~~~~~~~aa~~~~~----------l~~~~~~~~~~~~~~~~~~~~L~-~~~---g~~~~~~~~~~~~~~~~~  270 (352)
T cd00616         205 EHEILGYNYRLSEIQAAIGLAQ----------LEKLDEIIARRREIAERYKELLA-DLP---GIRLPDVPPGVKHSYHLY  270 (352)
T ss_pred             ccceeeeccCcCHHHHHHHHHH----------HHhhHHHHHHHHHHHHHHHHHhc-CCC---CccCCCCCCCCceeeEEE
Confidence                  0001222222222111          12346667777888889999998 652   144432211      223


Q ss_pred             ee-c----CCCHHHHHHHHhcccEEEc----CC-------------------------C--cEEEcc-CChhhHHHHHHH
Q 012647          408 SF-T----GLNKAQSDNMTNKWHVYMT----KD-------------------------G--RISLAG-LSLAKCEYLADA  450 (459)
Q Consensus       408 ~~-~----~l~~~~~~~ll~~~gI~v~----~g-------------------------g--Ris~~~-~~~e~i~~~~~~  450 (459)
                      .+ +    +.+.+.+.+.|+++||.+.    |.                         +  ||++.. .+++|+++++++
T Consensus       271 ~~~~~~~~~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~  350 (352)
T cd00616         271 VIRLDPEAGESRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEA  350 (352)
T ss_pred             EEEECCcCCCCHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHH
Confidence            22 2    2455555444455699553    10                         1  666654 388999999988


Q ss_pred             HH
Q 012647          451 II  452 (459)
Q Consensus       451 l~  452 (459)
                      |+
T Consensus       351 l~  352 (352)
T cd00616         351 LR  352 (352)
T ss_pred             hC
Confidence            73

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.82  E-value=1.1e-17  Score=165.66  Aligned_cols=319  Identities=13%  Similarity=0.028  Sum_probs=193.8

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcC-CC-CCCCCCccc----HHHHHHHHHHHhcCCCCccccCceEEee
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-EN-KEYLPIEGL----AAFNKVTAELLFGADNSVLKEQRVATVQ  156 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~-~~Y~~~~g~----~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (459)
                      ...++|+...|+   +... .|.++++..+.+++- .. ..-.-..|.    .+|.+.+|+++..        +..++  
T Consensus       102 r~~l~FsSndYL---GL~~-~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~--------e~all--  167 (476)
T PLN02955        102 KKLLLFSGNDYL---GLSS-HPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKK--------EDCLV--  167 (476)
T ss_pred             ceEEEeeccCcc---CCCC-CHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHCC--------CcEEE--
Confidence            468999998885   3332 678888888877531 00 000012333    7899999999743        33444  


Q ss_pred             cccchhHHHHHHHHHHH------------hCCCCEEEEcCCCCcchHHHhhhC----CCCeeeeeeecCCCCCCCHHHHH
Q 012647          157 GLSGTGSLRLAAALIER------------YFPGAKVLISSPTWGNHKNIFNDA----RVPWSEYRYYDPKTVGLDFEGMI  220 (459)
Q Consensus       157 t~ggt~a~~l~~~~~~~------------~~~gd~Vlv~~p~y~~~~~~~~~~----G~~v~~v~~~~~~~~~~d~e~l~  220 (459)
                      .++|-.++..+...+..            ..++|.|+...-.+.....-++..    +++++.++.       .|++.|+
T Consensus       168 ~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~H-------ND~~~Le  240 (476)
T PLN02955        168 CPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRH-------CDMYHLN  240 (476)
T ss_pred             ECChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCC-------CCHHHHH
Confidence            57777666665322210            124556777666776666666655    466666665       3789999


Q ss_pred             HHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEE
Q 012647          221 ADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVA  299 (459)
Q Consensus       221 ~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~  299 (459)
                      +.++..+...++|++....+++|.+.   ++++|.++|++||+++|+||+|..+..+..   ...+..... ..+.++++
T Consensus       241 ~~L~~~~~~~~~Vv~EgV~SmdGdia---pL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~---G~G~~e~~g~~~di~ii~  314 (476)
T PLN02955        241 SLLSSCKMKRKVVVTDSLFSMDGDFA---PMEELSQLRKKYGFLLVIDDAHGTFVCGEN---GGGVAEEFNCEADVDLCV  314 (476)
T ss_pred             HHHHhCCCCceEEEEeCCCCCCCCcC---CHHHHHHHHHHcCcEEEEcccccCceecCC---CCcHHHHhCCCCCCcEEE
Confidence            98876544567777788899999994   477888899999999999999886665421   112222221 23578999


Q ss_pred             EcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHH--HHHhCChhhHHHHHHHHHHHHHHHH
Q 012647          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIV--ANVVGNPALFDEWKAEMEMMAGRIK  377 (459)
Q Consensus       300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~~~~~~~~~~~~~~~~~~~~~  377 (459)
                      +||||.+|..|   ||+.+   +++.++.+........ ..+..++..+..+.  ...+...          ...+++++
T Consensus       315 ~TLsKA~G~~G---Gfi~g---s~~~~~~l~~~~~~~i-fStalpp~~aaa~laal~l~~~~----------~~~r~~L~  377 (476)
T PLN02955        315 GTLSKAAGCHG---GFIAC---SKKWKQLIQSRGRSFI-FSTAIPVPMAAAAYAAVVVARKE----------KWRRKAIW  377 (476)
T ss_pred             EeCccchhccC---ceeec---HHHHHHHHHHhCCCCe-ecccccHHHHHHHHHHHHHHhcC----------HHHHHHHH
Confidence            99999998776   88754   7775544443222211 11112222221111  1122111          23445555


Q ss_pred             HHHHHHHHHHhhccCCCCCcccccCCccee-eecCCC---HHHHHHHHhcccEEEcCC-------C----cEEEccC-Ch
Q 012647          378 NVRQKLFDSLSAKDKSGKDWSFILRQIGMF-SFTGLN---KAQSDNMTNKWHVYMTKD-------G----RISLAGL-SL  441 (459)
Q Consensus       378 ~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f-~~~~l~---~~~~~~ll~~~gI~v~~g-------g----Ris~~~~-~~  441 (459)
                      ++.+++.+.    .|    +..   ...++ ++++..   .++.++|++ +||++.+-       |    ||+++.. ++
T Consensus       378 ~n~~~fr~~----~G----~~~---~sPI~pI~ig~~~~a~~~~~~L~~-~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~  445 (476)
T PLN02955        378 ERVKEFKAL----SG----VDI---SSPIISLVVGNQEKALKASRYLLK-SGFHVMAIRPPTVPPNSCRLRVTLSAAHTT  445 (476)
T ss_pred             HHHHHHHHh----cC----CCC---CCCEEEEEeCCHHHHHHHHHHHHH-CCCEEEEECCCCCCCCCceEEEeeCCCCCH
Confidence            666555542    23    222   12333 455542   234567766 59987542       2    8888654 89


Q ss_pred             hhHHHHHHHHHHHHhh
Q 012647          442 AKCEYLADAIIDSYHN  457 (459)
Q Consensus       442 e~i~~~~~~l~~~~~~  457 (459)
                      +||+.++++|.++.+.
T Consensus       446 edId~lv~~L~~~~~~  461 (476)
T PLN02955        446 EDVKKLITALSSCLDF  461 (476)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999987764

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.82  E-value=1e-17  Score=165.35  Aligned_cols=214  Identities=15%  Similarity=0.145  Sum_probs=142.4

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcc-hH---HHhhhCCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGN-HK---NIFNDARV  199 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~-~~---~~~~~~G~  199 (459)
                      +.....+|++.++++...       +..++   +++|+.++..+   +..+.+||+|++++|+|.. |.   ..+...|+
T Consensus        48 ~~p~~~~Le~~lA~l~g~-------~~~~~---~~sG~aai~~~---~~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~  114 (377)
T PRK07671         48 GNPTRAALEELIAVLEGG-------HAGFA---FGSGMAAITAV---MMLFSSGDHVILTDDVYGGTYRVMTKVLNRFGI  114 (377)
T ss_pred             CChHHHHHHHHHHHHhCC-------CceEE---eCCHHHHHHHH---HHHhCCCCEEEECCCccchHHHHHHHHHhcCCe
Confidence            344567899999998643       23344   46667777665   3457899999999999984 43   23456788


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~  279 (459)
                      +++.++.       .|++.+++++++   +++++++++|+||||.+   .++++|.++|+++|+++|+|++|....... 
T Consensus       115 ~v~~v~~-------~d~~~l~~ai~~---~tklV~le~P~NPtg~~---~dl~~I~~la~~~g~~lvvD~a~~~~~~~~-  180 (377)
T PRK07671        115 EHTFVDT-------SNLEEVEEAIRP---NTKAIYVETPTNPLLKI---TDIKKISTIAKEKGLLTIVDNTFMTPYWQS-  180 (377)
T ss_pred             EEEEECC-------CCHHHHHHhcCC---CCeEEEEECCCCCCCcc---cCHHHHHHHHHHcCCEEEEECCCCccccCC-
Confidence            8888864       378999999975   78899999999999998   678889999999999999999986543221 


Q ss_pred             CCChhHHHHHHhcCCeEEEEEcCCcCcccCCCC-cceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCC
Q 012647          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAER-IGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN  358 (459)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R-iG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  358 (459)
                           .+    . ...++++.|+||.++.++-- .|++  ++.+++..+++.....    ......+...+..+..-+  
T Consensus       181 -----p~----~-~g~Divv~S~sK~l~G~~~~~~G~~--v~~~~~l~~~~~~~~~----~~g~~~~~~~a~l~~~~l--  242 (377)
T PRK07671        181 -----PI----S-LGADIVLHSATKYLGGHSDVVAGLV--VVNSPELAEDLHFVQN----STGGILGPQDSWLLLRGL--  242 (377)
T ss_pred             -----hh----h-hCCeEEEecCcccccCCccceeEEE--EeCcHHHHHHHHHHHH----hhcCCCCHHHHHHHHcCc--
Confidence                 11    1 13469999999999855432 3444  4556665444432221    211122333222222211  


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                              +.+....++..++...+.+.|+ +.
T Consensus       243 --------~tl~~R~~~~~~na~~la~~L~-~~  266 (377)
T PRK07671        243 --------KTLGIRMEEHETNSRAIAEFLN-NH  266 (377)
T ss_pred             --------ChHHHHHHHHHHHHHHHHHHHH-cC
Confidence                    1244566666777788888887 54

>PRK02769 histidine decarboxylase; Provisional

Probab=99.82  E-value=1.3e-17  Score=164.00  Aligned_cols=289  Identities=15%  Similarity=0.117  Sum_probs=189.2

Q ss_pred             HHHHHHHHHHhcCCCCccccCce--EEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeee
Q 012647          130 AFNKVTAELLFGADNSVLKEQRV--ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY  207 (459)
Q Consensus       130 ~lr~aia~~l~~~~~~~~~~~~i--~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~  207 (459)
                      +.++.++++++..      ++++  .+  |+|||+++..+....+.+.++++|++++-.+......++..|.+...+|+.
T Consensus        69 ~~~~~~a~l~g~~------~~~~~G~~--TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~  140 (380)
T PRK02769         69 DVMNFFAELFKIP------FNESWGYI--TNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLRIKSRVITSL  140 (380)
T ss_pred             HHHHHHHHHhCCC------CCCCCEEE--ecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHcCCCCceeccC
Confidence            5555666665432      3444  56  999999987764333335688999999999999999999999999999984


Q ss_pred             cCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC---CeeEEeccCCCCCCCCCCCChh
Q 012647          208 DPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN---HIPFFDVAYQGFASGSLDNDAS  284 (459)
Q Consensus       208 ~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~---~~ii~Deay~~~~~~~~~~~~~  284 (459)
                        .++.+|+++|++++++...++++++.+.++|+||.+   +++++|+++|++||   +++++|.+|..+... ......
T Consensus       141 --~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~i---dpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p-~~~~~~  214 (380)
T PRK02769        141 --PNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAI---DNIKEIQEILKKIGIDDYYIHADAALSGMILP-FVNNPP  214 (380)
T ss_pred             --CCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCccc---CCHHHHHHHHHHhCCCceEEEEEecccceeec-ccCccc
Confidence              367899999999998744458888899999999999   88999999999998   699999997765432 101110


Q ss_pred             HHHHHHhcCCeEEEEEcCCcCcc-cCCCCcceEEEEeCChhHHHHHHH---HHHhhccccccCCchH---HHHHHHHHhC
Q 012647          285 SVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNVVCSSSDLAARVKS---QLKRLARPMYSNPPVH---GARIVANVVG  357 (459)
Q Consensus       285 ~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~L~  357 (459)
                      .+.  ... .-+.+..|.+|.++ +.|  +|.+++   .++..+.+..   .+........++.+..   +..++...+.
T Consensus       215 ~~d--~~~-~vDsis~s~HK~~~~P~g--~G~l~~---r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg  286 (380)
T PRK02769        215 PFS--FAD-GIDSIAISGHKFIGSPMP--CGIVLA---KKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLG  286 (380)
T ss_pred             cCC--ccC-CCCEEEECCcccCCCCCC--cEEEEE---ehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHC
Confidence            110  111 45677889999987 444  898865   3443332211   0000000011122222   2222222232


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccc-ccCCcceeeecCCCHHHHHHHHhcccEEEcCCC-cEE
Q 012647          358 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF-ILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDG-RIS  435 (459)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~gg-Ris  435 (459)
                              .+.++++.++..++.+++.+.|+ +.|+    +. ..|.....+|...+.+.    .+++.+...++. ||.
T Consensus       287 --------~~G~~~~~~~~~~la~~l~~~L~-~~g~----~~~~~p~~~~v~f~~~~~~~----~~~w~l~~~~~~~hi~  349 (380)
T PRK02769        287 --------SKGLRQRVQHCLDMAQYAVDRLQ-ANGI----PAWRNPNSITVVFPCPSERI----WKKWHLATSGNQAHII  349 (380)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHH-hCCC----EEEcCCCceEEEEcCCCHHH----HhCeeEcccCCEEEEE
Confidence                    23467888899999999999998 7763    43 34554444554334332    244555554444 887


Q ss_pred             Ecc-CChhhHHHHHHHHHHHHhh
Q 012647          436 LAG-LSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       436 ~~~-~~~e~i~~~~~~l~~~~~~  457 (459)
                      +.. .+.|.++.+++-|.+.+..
T Consensus       350 ~~~~~~~~~~~~f~~dl~~~~~~  372 (380)
T PRK02769        350 TMPHHNKQQIDSLIDELIFDLKN  372 (380)
T ss_pred             ECCCCCHHHHHHHHHHHHHHHhc
Confidence            764 3778899999998887653

>PLN02509 cystathionine beta-lyase

Probab=99.82  E-value=1.4e-17  Score=166.79  Aligned_cols=221  Identities=14%  Similarity=0.128  Sum_probs=142.5

Q ss_pred             CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----hh
Q 012647          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FN  195 (459)
Q Consensus       120 ~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~  195 (459)
                      +.|... |.+ .++++.+++....+    .++.++  +++|++++.++   +..+.+||+|+++.|.|..+...    +.
T Consensus       125 ~~Y~r~-gnp-t~~aLE~~lA~leg----~e~ai~--~~SG~aAi~~i---l~ll~~GD~VI~~~~~y~~t~~ll~~~l~  193 (464)
T PLN02509        125 YDYTRS-GNP-TRDALESLLAKLDK----ADRAFC--FTSGMAALSAV---THLIKNGEEIVAGDDVYGGSDRLLSQVVP  193 (464)
T ss_pred             CccCCC-CCH-HHHHHHHHHHHHhC----CCEEEE--eCcHHHHHHHH---HHHhCCCCEEEEcCCchhhHHHHHHHHHH
Confidence            567544 543 35555554433322    345555  67888887665   34578999999999999987643    45


Q ss_pred             hCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012647          196 DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFA  275 (459)
Q Consensus       196 ~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~  275 (459)
                      ..|++++.++.       .|++++++++++   +++++++++|+||||.+   .++++|+++|++||+++|+|++|....
T Consensus       194 ~~G~~v~~vd~-------~d~e~l~~ai~~---~TklV~lesPsNPtG~i---~Dl~~I~~lAk~~g~~lIVD~A~a~~~  260 (464)
T PLN02509        194 RSGVVVKRVNT-------TNLDEVAAAIGP---QTKLVWLESPTNPRQQI---SDIRKIAEMAHAQGALVLVDNSIMSPV  260 (464)
T ss_pred             HCCeEEEEeCC-------CCHHHHHHhCCc---CCeEEEEECCCCCCCCH---HHHHHHHHHHHHcCCEEEEECCccccc
Confidence            67888887754       368999988865   78899999999999998   999999999999999999999965433


Q ss_pred             CCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHH
Q 012647          276 SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV  355 (459)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (459)
                      ...      .+     ....++++.|++|.++-+|--+|.++ ++.++...+++.. +..   ......+...+.++..-
T Consensus       261 ~~~------pl-----~~gaDivv~S~tK~l~G~gdv~gG~v-~~~~~~l~~~~~~-~~~---~~g~~l~p~~A~l~lr~  324 (464)
T PLN02509        261 LSR------PL-----ELGADIVMHSATKFIAGHSDVMAGVL-AVKGEKLAKEVYF-LQN---SEGSGLAPFDCWLCLRG  324 (464)
T ss_pred             cCC------hh-----hcCCcEEEecCcccccCCCccceeEE-EeccHHHHHHHHH-HHH---hcCCCcCHHHHHHHHhh
Confidence            210      11     12346889999999875443234432 2344443333221 111   11112233222222222


Q ss_pred             hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          356 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       356 L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                      |          +.+....++..++.+.+.+.|+ +.
T Consensus       325 L----------~tL~~R~~r~~~nA~~la~~L~-~~  349 (464)
T PLN02509        325 I----------KTMALRIEKQQENARKIAMYLS-SH  349 (464)
T ss_pred             h----------hhHHHHHHHHHHHHHHHHHHHh-cC
Confidence            1          3356667777778888888887 65

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.82  E-value=8.7e-18  Score=169.42  Aligned_cols=340  Identities=11%  Similarity=0.033  Sum_probs=197.0

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCC--CCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK--EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~--~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...||+..|..-...|..  +|.|.+++.+.++.....  .........+|.+.++++....      .+.+.+  +++
T Consensus        42 G~~ylD~~~g~~~~~lGh~--~p~v~~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~~~~------~~~v~f--~~S  111 (433)
T PRK08117         42 GKEYLDFTSGIAVANVGHR--HPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEITPGG------LDCFFF--SNS  111 (433)
T ss_pred             CCEEEECCcchhhccCCCC--CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCC------CCEEEE--eCc
Confidence            3578898888542333443  788999998887642101  1113334456666666664221      357888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh-hCC-------------CCeeeeeeecCCC--CC--------CC
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DAR-------------VPWSEYRYYDPKT--VG--------LD  215 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~G-------------~~v~~v~~~~~~~--~~--------~d  215 (459)
                      |++|++.+.++...+....+|+..+-+|.+...... ..+             ..+..+|......  .+        -|
T Consensus       112 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (433)
T PRK08117        112 GAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLEC  191 (433)
T ss_pred             HHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHH
Confidence            999999998876655555789888888876432211 111             0122333311000  00        15


Q ss_pred             HHHHHHHHHc--CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc
Q 012647          216 FEGMIADIKA--APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR  292 (459)
Q Consensus       216 ~e~l~~~i~~--~~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~  292 (459)
                      ++.+++.++.  .++...++++.....-.|.+ .+++.+++|.++|++||+++|+||+|.+++..+   ..+.... .+.
T Consensus       192 ~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G---~~~~~~~-~gv  267 (433)
T PRK08117        192 LRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTG---EWFAAQT-FGV  267 (433)
T ss_pred             HHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccc---cchhHhh-cCC
Confidence            5667766653  22345666666666666765 578889999999999999999999999876532   1111111 111


Q ss_pred             CCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHH
Q 012647          293 GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMM  372 (459)
Q Consensus       293 ~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~  372 (459)
                      .++   +.+|||.++ +|+++|++++   +++..+.    +.......+.+.+.+++.++...|+.-      ++  +..
T Consensus       268 ~pD---i~t~sK~lg-~G~pigav~~---~~~i~~~----~~~~~~~~T~~~np~~~aaa~a~L~~l------~~--~~l  328 (433)
T PRK08117        268 VPD---IMTIAKGIA-SGLPLSAVVA---SKELMEQ----WPLGSHGTTFGGNPVACAAALATLEVI------KE--EKL  328 (433)
T ss_pred             CCC---Eeehhhhcc-CCCcceeEEE---cHHHHhh----ccCCCCCCCCCcCHHHHHHHHHHHHHH------Hh--ccH
Confidence            223   359999999 8999999866   7774433    322222223344566666665554311      00  123


Q ss_pred             HHHHHHHHHHHHHHHhhccC--CCCCcccccCCcceeeecCC-------C----HHHHHHHHhcccEEEcCCC------c
Q 012647          373 AGRIKNVRQKLFDSLSAKDK--SGKDWSFILRQIGMFSFTGL-------N----KAQSDNMTNKWHVYMTKDG------R  433 (459)
Q Consensus       373 ~~~~~~~~~~l~~~L~~~~g--~~~~~~~~~~~~g~f~~~~l-------~----~~~~~~ll~~~gI~v~~gg------R  433 (459)
                      .++++++.+++.+.|+ ++.  .+. +..+ +..|.++.+.+       +    ..+.+.+++ +||.+.+.|      |
T Consensus       329 ~~~~~~~g~~l~~~L~-~l~~~~~~-~~~v-rg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~g~~~~~lR  404 (433)
T PRK08117        329 LDNANEMGAYALERLE-VLKEKHPV-IGDV-RGIGLMIGIEIVDPDGEPDGDAVEKILDKCLE-KGLLFYLCGNAGNVLR  404 (433)
T ss_pred             HHHHHHHHHHHHHHHH-HHHhcCCc-eeee-ecCCcEEEEEEecCCCCcchHHHHHHHHHHHH-CCCEEeecCCCCCEEE
Confidence            4444555555555555 431  110 1112 22234433221       1    123445555 699886532      7


Q ss_pred             EEEc-cCChhhHHHHHHHHHHHHhhc
Q 012647          434 ISLA-GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       434 is~~-~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      |+.+ ..++++|++++++|.++++++
T Consensus       405 l~p~~~~t~~~i~~~~~~l~~~l~~~  430 (433)
T PRK08117        405 MIPPLTVTKEEIDEGLDILDEALTEY  430 (433)
T ss_pred             EeCCccCCHHHHHHHHHHHHHHHHHH
Confidence            7752 339999999999999998764

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.81  E-value=5.9e-18  Score=167.19  Aligned_cols=163  Identities=16%  Similarity=0.148  Sum_probs=120.5

Q ss_pred             cHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----hhhCCCCeee
Q 012647          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARVPWSE  203 (459)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~G~~v~~  203 (459)
                      ..+|++.+++++..        +++++  +++|+.++.++   +..+.+||+|+++.+.|..+...    ++..|++++.
T Consensus        49 ~~~le~~la~l~g~--------~~~l~--~~sG~~al~~~---l~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~  115 (378)
T TIGR01329        49 RTALESLLAKLDKA--------DRAFA--FSSGMAALDVI---TRLLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVH  115 (378)
T ss_pred             HHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH---HHHhCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEE
Confidence            56788888887543        34555  57778888875   23578999999999999876543    4567999998


Q ss_pred             eeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCCh
Q 012647          204 YRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA  283 (459)
Q Consensus       204 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~  283 (459)
                      ++.       .|++.+++++++   +++++++++|+||||.+   .++++|+++|+++|+++|+|++|......      
T Consensus       116 vd~-------~d~~~le~~i~~---~tklv~le~psnptg~v---~dl~~I~~la~~~g~~vivD~a~~~~~~~------  176 (378)
T TIGR01329       116 VDT-------TDLDKVKAALGP---KTKLVLLESPTNPLQKI---VDIRKISEMAHAQNALVVVDNTMMSPLLC------  176 (378)
T ss_pred             eCC-------CCHHHHHHhcCc---CceEEEEECCCCCCCee---ecHHHHHHHHHHcCCEEEEECCCcccccC------
Confidence            876       278999999875   78899999999999999   56889999999999999999996432211      


Q ss_pred             hHHHHHHhcCCeEEEEEcCCcCccc-CCCCcceEEEEeCChhHHHHH
Q 012647          284 SSVRLFATRGMELLVAQSYSKNLGL-YAERIGAMNVVCSSSDLAARV  329 (459)
Q Consensus       284 ~~~~~~~~~~~~~i~~~S~SK~~~~-~G~RiG~~~~v~~~~~~~~~~  329 (459)
                      ..+    . ...++++.|++|.++- .+.+.|+++  +++++..+++
T Consensus       177 ~~l----~-~g~Di~v~S~tK~l~G~~~~~~G~v~--~~~~~~~~~~  216 (378)
T TIGR01329       177 NPL----E-LGADIVYHSATKFLAGHSDVMAGVLA--VKGEEIAKKV  216 (378)
T ss_pred             Chh----h-cCCcEEEEecceeccCCccceeEEEE--eCcHHHHHHH
Confidence            011    1 1346899999998753 357788884  4555533444

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.81  E-value=3.1e-17  Score=152.86  Aligned_cols=313  Identities=17%  Similarity=0.085  Sum_probs=199.5

Q ss_pred             cHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEE
Q 012647          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLI  182 (459)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv  182 (459)
                      .|++.++|.+.-.. ....|+..+-..++.+.+++.+..        ..++|  +.+||.++.++  +...+.||+.|++
T Consensus        13 ~~~m~eam~~a~~~-~~~~YG~D~~~~~~e~~~ae~~g~--------~a~~F--v~sGT~aN~la--l~~~~~~~~~vi~   79 (342)
T COG2008          13 TPEMREALAAANAV-GDDVYGEDPTTNALEQRIAELFGK--------EAALF--VPSGTQANQLA--LAAHCQPGESVIC   79 (342)
T ss_pred             CHHHHHHHHhcccc-CCCCCCCCHHHHHHHHHHHHHhCC--------ceEEE--ecCccHHHHHH--HHHhcCCCCeEEE
Confidence            79999999887643 346787777777777777777532        56788  89999999998  5555789999999


Q ss_pred             cCCCCcchHH--HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc----CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 012647          183 SSPTWGNHKN--IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA----APGGSFILLHGCAHNPTGIDPTPEQWEKIAD  256 (459)
Q Consensus       183 ~~p~y~~~~~--~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~----~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~  256 (459)
                      ..-.+....+  ..+..+ .+..++..+..++.+++|++++.+..    ..+...+++ -|.+|.-|+++|.+++++|.+
T Consensus        80 ~~~aHi~~~E~Ga~~~~~-~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~-e~~~te~GtVy~l~el~~i~~  157 (342)
T COG2008          80 HETAHIYTDECGAPEFFG-GGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVL-ENTATEGGTVYPLDELEAISA  157 (342)
T ss_pred             eccccceecccCcHHHHc-CCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEE-eeccCCCceecCHHHHHHHHH
Confidence            8876643211  122222 23444554456889999999998875    223344444 444557799999999999999


Q ss_pred             HHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhh
Q 012647          257 VIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRL  336 (459)
Q Consensus       257 l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~  336 (459)
                      +|++||+.++.|.+--....-....+...+..     ..+++..++||..+.|   +|.+  +..++++++++....+..
T Consensus       158 ~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~-----~~D~v~~~~tK~g~~~---~gAi--v~gn~~~~~~a~~~rK~~  227 (342)
T COG2008         158 VCKEHGLPLHMDGARLANALVALGVALKTIKS-----YVDSVSFCLTKGGGAP---VGAI--VFGNRDFAKRARRWRKRA  227 (342)
T ss_pred             HHHHhCCceeechHHHHHHHHHcCCCHHHHHh-----hCCEEEEecccCCcce---eeeE--EEcCHHHHHHHHHHHHHh
Confidence            99999999999998432211101112222222     2456777899998866   5888  678999776665544432


Q ss_pred             ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCcccccCCcceeeecCCCHH
Q 012647          337 ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFILRQIGMFSFTGLNKA  415 (459)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~g~f~~~~l~~~  415 (459)
                      .+ .. .-..+.+.....+|++.-+        .....+-.+....|.+.|. .. |    +++..|.-...+|+.+...
T Consensus       228 Gg-l~-~k~r~laA~~~~~l~~~~~--------~~~~~Han~mA~~La~~~~-~~~G----~~~~~~~~tN~vf~~l~~~  292 (342)
T COG2008         228 GG-LM-RKARFLAAQGLYALEDDVW--------RLAADHANAMAARLAEGLE-AKPG----VKLAFPVETNMVFVRLPES  292 (342)
T ss_pred             cc-cH-hhhhHHHHHHHHHHhccHH--------HHHHHHHHHHHHHHHHhhh-hcCC----ceeccCCcccEEEEECChH
Confidence            22 12 2223333333445554322        1222333345777788887 44 5    4655544455667766543


Q ss_pred             HHH-----HHHhcccEEEcCCC---cEEEccC-ChhhHHHHHHHHHHHH
Q 012647          416 QSD-----NMTNKWHVYMTKDG---RISLAGL-SLAKCEYLADAIIDSY  455 (459)
Q Consensus       416 ~~~-----~ll~~~gI~v~~gg---Ris~~~~-~~e~i~~~~~~l~~~~  455 (459)
                      ..+     ..+...|+.+.+++   |+..+.- ++++++.++..+++++
T Consensus       293 ~i~~l~~~~~~~~~~~~~~~~~~~vRfvts~a~~~edv~~~~~~~~~~~  341 (342)
T COG2008         293 AIEALRLAGALFYRGVLIGAHGEIVRFVTSWATSEEDVDELVAAIKALL  341 (342)
T ss_pred             HHHHHHhhchhheeeeeccCCCceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence            333     23334577777765   7743322 8899999999998765

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.81  E-value=2.1e-17  Score=163.73  Aligned_cols=230  Identities=13%  Similarity=0.039  Sum_probs=152.3

Q ss_pred             HHHHHHHHHHHhcCCCCccccCceEEeecccchh-HHHHHHHHHHHhC-CCCEEEEcCCCCcchHHHhhhCCCCeeeeee
Q 012647          129 AAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG-SLRLAAALIERYF-PGAKVLISSPTWGNHKNIFNDARVPWSEYRY  206 (459)
Q Consensus       129 ~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~-a~~l~~~~~~~~~-~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~  206 (459)
                      .+|.+.+++++..+.     .+..++  ++|+|+ ++.++...+.... +||.|+++.-+|......+..+|++++.+|.
T Consensus       108 ~~~e~~~~~~~G~~~-----~~~a~~--v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~  180 (444)
T TIGR03531       108 NKLVKDFLKLLGLRS-----IKSAFV--VPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPRVIET  180 (444)
T ss_pred             HHHHHHHHHHcCCCC-----CCEEEE--ECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEEEeee
Confidence            345555555543210     134666  789995 6666622211112 5899999999988888999999999999996


Q ss_pred             -ecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhH
Q 012647          207 -YDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASS  285 (459)
Q Consensus       207 -~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~  285 (459)
                       .+++++.+|++.++++|++..++++++++++|+  |+.....+++++|+++|++||+++|+|+||.....        .
T Consensus       181 ~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~--------~  250 (444)
T TIGR03531       181 VLDGDELTTDVEDIERAIEEIGPDNILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSN--------K  250 (444)
T ss_pred             eecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcCh--------h
Confidence             346689999999999998643245666666655  55545559999999999999999999999875321        1


Q ss_pred             HHHHHh----cCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhh
Q 012647          286 VRLFAT----RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPAL  361 (459)
Q Consensus       286 ~~~~~~----~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~  361 (459)
                      ...+..    .+.-++++.|++|.+.+||+  |+++. +.++++.+.+..    .....  ..+...+.+...++..+  
T Consensus       251 ~~~~~~~g~~~Grad~vv~s~hK~l~~pg~--Gg~I~-~~d~el~~~i~~----~y~g~--~~~s~~~~~~~~ll~~G--  319 (444)
T TIGR03531       251 YMELINKAIKVGRVDAVVSSTDKNFMVPVG--GAIIY-SFDENFIQEISK----SYPGR--ASASPSLDVLITLLSLG--  319 (444)
T ss_pred             hhhhhhccccccCCCeEEEeCccCCCCCCC--EEEEE-ECCHHHHHHHHH----hccCC--CCChHHHHHHHHHHHhC--
Confidence            111111    11226778899999998887  77643 667775544433    21111  23344555555554332  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          362 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                          .+.++++.+++.++++++.+.|+ ++
T Consensus       320 ----~~g~~~li~~~~~~a~~l~~~L~-~l  344 (444)
T TIGR03531       320 ----SKGYLELLKERKEMYKYLKELLQ-KL  344 (444)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence                34467778888888888888887 54

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.81  E-value=9.2e-18  Score=167.17  Aligned_cols=333  Identities=12%  Similarity=0.063  Sum_probs=203.5

Q ss_pred             cCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHh------
Q 012647          101 YVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY------  174 (459)
Q Consensus       101 ~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~------  174 (459)
                      ++.|.+.+.+...+.... ..+.......++.+.+.+++....|.+-..+++.+..|+|||+|++++.......      
T Consensus        52 ~~~p~~~~~~~~~l~~~~-~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~  130 (431)
T TIGR01788        52 WMEPEARKLMDETINKNM-IDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRME  130 (431)
T ss_pred             CCCHHHHHHHHHHHhcCC-CCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHH
Confidence            347788898888885432 2222222222344433344333333310014565544799999999985333211      


Q ss_pred             CCC-----CEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHH
Q 012647          175 FPG-----AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPE  249 (459)
Q Consensus       175 ~~g-----d~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~  249 (459)
                      ..|     ..|++++-.+..+...++..|++++.+|+++ +++.+|++.|+++|++   ++.+|+++..+|.||.+   +
T Consensus       131 ~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~-~~~~vd~~~L~~~i~~---~t~lV~~t~g~t~tG~i---d  203 (431)
T TIGR01788       131 AAGKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDP-GRYVIDPEQVVEAVDE---NTIGVVCILGTTYTGEY---E  203 (431)
T ss_pred             hcCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEecCC-CceeeCHHHHHHHHhh---CCeEEEEEeCCCCCccc---C
Confidence            112     3688888889999888888999999999953 3468999999999986   68888889999999999   8


Q ss_pred             HHHHHHHHHHhc------CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc-ccCCCCcceEEEEeCC
Q 012647          250 QWEKIADVIQEK------NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSS  322 (459)
Q Consensus       250 ~l~~i~~l~~~~------~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~  322 (459)
                      ++++|+++|+++      |+++++|.+|.++... ....  .++.......-+.+..|.+|.+ ++.|  +|++++  ++
T Consensus       204 pi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p-~~~~--~~~~~~~~~~~DSis~s~HK~~~~P~g--~G~l~~--r~  276 (431)
T TIGR01788       204 DVKALNDALDEYNAKTGWDIPIHVDAASGGFIAP-FVYP--DLEWDFRLPRVKSINVSGHKYGLVYPG--VGWVIW--RD  276 (431)
T ss_pred             CHHHHHHHHHHHHhhhCCCceEEEecccHHHHHH-HhCC--CchhhcCCCCceEEEECchhccCCCCC--cEEEEE--eC
Confidence            999999999999      9999999998754310 0000  1111112223456788999976 8777  798854  33


Q ss_pred             hhHHHHHHHHHHh---hccc----cccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 012647          323 SDLAARVKSQLKR---LARP----MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGK  395 (459)
Q Consensus       323 ~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  395 (459)
                      ++.   +...+..   +...    .....+..+..++..++.   +...-.+.++++.++..++.+++.+.|+ +.+   
T Consensus       277 ~~~---l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~---l~~lG~~G~~~i~~~~~~la~~l~~~L~-~~~---  346 (431)
T TIGR01788       277 EEA---LPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYN---FLRLGREGYRKIMQNSLDVARYLAEEIA-KLG---  346 (431)
T ss_pred             hHH---cchhheecccccCCCCCCcceecCchHHHHHHHHHH---HHHhcHHHHHHHHHHHHHHHHHHHHHHH-hCC---
Confidence            331   1111110   0000    001111111111211111   0000024567888899999999999998 774   


Q ss_pred             CcccccC--Ccceeeec--C-----CCHHHHHHHHhcccEEE----cCC---C----cEEEc-cCChhhHHHHHHHHHHH
Q 012647          396 DWSFILR--QIGMFSFT--G-----LNKAQSDNMTNKWHVYM----TKD---G----RISLA-GLSLAKCEYLADAIIDS  454 (459)
Q Consensus       396 ~~~~~~~--~~g~f~~~--~-----l~~~~~~~ll~~~gI~v----~~g---g----Ris~~-~~~~e~i~~~~~~l~~~  454 (459)
                      +|+++.+  ..+...|.  +     .+...+...|++.|+.+    .|.   |    |+++. ..+.+.++.+++.|.++
T Consensus       347 ~~el~~~~~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~  426 (431)
T TIGR01788       347 PFEIISDGSGIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAA  426 (431)
T ss_pred             CEEEeeCCCCceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHH
Confidence            2565543  55655553  2     33334333444469863    332   3    88875 34788999999999999


Q ss_pred             Hhhc
Q 012647          455 YHNV  458 (459)
Q Consensus       455 ~~~~  458 (459)
                      +.++
T Consensus       427 ~~~~  430 (431)
T TIGR01788       427 LAYL  430 (431)
T ss_pred             HHhh
Confidence            8775

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.80  E-value=5.3e-17  Score=163.22  Aligned_cols=344  Identities=12%  Similarity=0.062  Sum_probs=196.8

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCC---CCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK---EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~---~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      +...+|+..|..-..-|+.  +|.|.+++.+.+++....   .| +..-..+|.+.+++.....      -+.+.+  ++
T Consensus        41 G~~ylD~~~g~~~~~lGh~--~p~v~~ai~~q~~~~~~~~~~~~-~~~~~~~la~~l~~~~p~~------~~~v~f--~~  109 (423)
T PRK05964         41 GRELIDAISSWWVATHGHN--HPYIDQAIREQLDRLDHVIFAGF-THEPAERLAQRLVALTPGG------LDHVFF--SD  109 (423)
T ss_pred             CCEEEEcchhHHhccCCCC--CHHHHHHHHHHHhhCCCcccccc-CCHHHHHHHHHHHHhCCCC------CCEEEE--eC
Confidence            3578898888543333443  789999999888652211   12 2222234444444442111      257888  99


Q ss_pred             cchhHHHHHHHHHHHh------CCCCEEEEcCCCCcchHHHhhhC-C------------CCeeeeeeecCCCCCCCHHHH
Q 012647          159 SGTGSLRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDA-R------------VPWSEYRYYDPKTVGLDFEGM  219 (459)
Q Consensus       159 ggt~a~~l~~~~~~~~------~~gd~Vlv~~p~y~~~~~~~~~~-G------------~~v~~v~~~~~~~~~~d~e~l  219 (459)
                      +|++|++.+.++.+.+      ....+|+...-+|.+........ +            ..+..+|....+....+++.+
T Consensus       110 sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l  189 (423)
T PRK05964        110 SGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDAL  189 (423)
T ss_pred             CcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHH
Confidence            9999999998887765      12368999998887653322211 1            112233331111011227888


Q ss_pred             HHHHHcCCCCcEEEEeCC-CCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEE
Q 012647          220 IADIKAAPGGSFILLHGC-AHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (459)
Q Consensus       220 ~~~i~~~~~~~~~ii~~~-p~NPTG~~~-s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i  297 (459)
                      ++.+.+.++....+++.. .++..|..+ +++.+++|.++|++||+++|+||++.+++..+   ..+... ..+..++++
T Consensus       190 ~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G---~~~a~~-~~~v~pDi~  265 (423)
T PRK05964        190 EALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTG---TLFACE-QAGVSPDIM  265 (423)
T ss_pred             HHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc---chhHHH-hcCCCCCee
Confidence            888865444555555544 578888765 89999999999999999999999988876432   111211 112223433


Q ss_pred             EEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHH--HHh-hccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 012647          298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQ--LKR-LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAG  374 (459)
Q Consensus       298 ~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~  374 (459)
                         +++|.++..++++|++++   +++..+.+...  -.. ....++ +.+.++..++...|+-   .   ++  +...+
T Consensus       266 ---~~~K~l~gG~~p~~av~~---~~~i~~~~~~~~~~~~~~~~~T~-~~np~~~aaa~a~l~~---l---~~--~~~~~  330 (423)
T PRK05964        266 ---CLSKGLTGGYLPLAATLC---TAEIFEAFYSDDRAKAFMHSPSY-TANPLACAAANASLDL---F---ED--EPVLE  330 (423)
T ss_pred             ---eeehhhhcCcccceEEEE---cHHHHHhhhcCCcccccccCCCC-CcCHHHHHHHHHHHHH---H---Hh--cCHHH
Confidence               778999844489999866   77744444211  000 111222 2344443444333320   0   00  12345


Q ss_pred             HHHHHHHHHHHHHhhcc-CCCCCcccccCCcceee-ecC-CC----H-HHHHHHHhcccEEEcCCC---cEEEcc-CChh
Q 012647          375 RIKNVRQKLFDSLSAKD-KSGKDWSFILRQIGMFS-FTG-LN----K-AQSDNMTNKWHVYMTKDG---RISLAG-LSLA  442 (459)
Q Consensus       375 ~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~g~f~-~~~-l~----~-~~~~~ll~~~gI~v~~gg---Ris~~~-~~~e  442 (459)
                      +..++-+++.+.|+ ++ +.|. +..+...|.++. .+. .+    . .+...|++ +||.+.+.+   ||+... .+++
T Consensus       331 ~~~~~g~~l~~~l~-~l~~~~~-i~~vrg~Gl~~~i~l~~~~~~~~~~~l~~~l~~-~Gv~v~~~~~~lR~~p~l~~t~e  407 (423)
T PRK05964        331 RVAALSAGLAEGLE-PFRDLPG-VADVRVLGAIGAVELDRPVLERDGPALRAFALE-RGVLLRPLGNTIYLMPPYIITAE  407 (423)
T ss_pred             HHHHHHHHHHHHHH-hhccCCC-eEEeecccEEEEEEeccCcchhHHHHHHHHHHH-CCeEEEecCCEEEEeCCcccCHH
Confidence            55555666666666 54 2111 111223333321 122 11    2 33455555 699998765   887552 2999


Q ss_pred             hHHHHHHHHHHHHhhc
Q 012647          443 KCEYLADAIIDSYHNV  458 (459)
Q Consensus       443 ~i~~~~~~l~~~~~~~  458 (459)
                      +|+++++++.++++++
T Consensus       408 dId~~v~~l~~al~~~  423 (423)
T PRK05964        408 ELDRITDAIVEVADEL  423 (423)
T ss_pred             HHHHHHHHHHHHHhhC
Confidence            9999999999999875

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.80  E-value=6e-17  Score=161.88  Aligned_cols=343  Identities=10%  Similarity=0.011  Sum_probs=194.0

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCC--CCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGAD--NSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~--~~~~~~~~i~~~~t~g  159 (459)
                      +...||+..|.--..-+..  +|.|.+++++.++... ... ......+.+..+++.+....  .... .+.+.+ .+++
T Consensus        34 G~~ylD~~~g~~~~~lGh~--~p~v~~ai~~ql~~~~-~~~-~~~~~~~~~~~lae~l~~~~~~~~~~-~~~~~f-~~~s  107 (412)
T TIGR02407        34 GKEYIDFFAGAGALNYGHN--NPKLKQALIDYLADDG-IIH-SLDMATEAKREFLETFNEIILKPRGL-DYKVQF-PGPT  107 (412)
T ss_pred             CCEEEEcccchhhccCCCC--CHHHHHHHHHHHhhcc-cee-ccccCcHHHHHHHHHHHHhccCccCC-CceEEE-eCCC
Confidence            3578898877542233443  7899999988875311 111 11111233333444433210  0000 123544 1489


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhh-CC------------CCeeeeeeecCCC-CCCCHHHHHHHHHc
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-AR------------VPWSEYRYYDPKT-VGLDFEGMIADIKA  225 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~G------------~~v~~v~~~~~~~-~~~d~e~l~~~i~~  225 (459)
                      |++|++.+.++...+....+|+....+|.+....... .|            ..+..+|..+... ..-+++.+++.+.+
T Consensus       108 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~  187 (412)
T TIGR02407       108 GTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLED  187 (412)
T ss_pred             chHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHh
Confidence            9999999988877665557899999888766432221 11            1223344311000 00246777877764


Q ss_pred             CC---CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEc
Q 012647          226 AP---GGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS  301 (459)
Q Consensus       226 ~~---~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S  301 (459)
                      ..   +....+++...+++.|. .++++.+++|.++|++||+++|+||++.+++-.+   ..+.... ....++++   +
T Consensus       188 ~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG---~~~a~~~-~~v~PDi~---~  260 (412)
T TIGR02407       188 SSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTG---TFFSFEP-AGIEPDIV---C  260 (412)
T ss_pred             ccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---hhHHhcc-cCCCCCEE---E
Confidence            21   24567777778899998 6789999999999999999999999988775321   1111111 12234433   6


Q ss_pred             CCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHH---HHHH-HhCChhhHHHHHHHHHHHHHHHH
Q 012647          302 YSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGAR---IVAN-VVGNPALFDEWKAEMEMMAGRIK  377 (459)
Q Consensus       302 ~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~L~~~~~~~~~~~~~~~~~~~~~  377 (459)
                      +||.++..|+|+|++++   +++. +.+.   ......++ +.+.++..   ++.. +++++++    .++++++.++++
T Consensus       261 ~~K~lg~~G~pigav~~---~~~~-~~~~---~~~~~~T~-~gnpl~~aaa~a~l~~~i~~~~l----~~~~~~~g~~l~  328 (412)
T TIGR02407       261 LSKSISGYGLPLALTLI---KPEL-DVWK---PGEHNGTF-RGNNLAFVTATAALEYYWSDDAF----EKAVQRKSEIIQ  328 (412)
T ss_pred             echhccCCccceeEEEE---chhh-hccC---CCccCCCC-CccHHHHHHHHHHHHHHhcccHH----HHHHHHHHHHHH
Confidence            88999933999999976   5552 2221   11112222 33333222   2233 2444333    233344444444


Q ss_pred             HHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCH-----HHHHHHHhcccEEEcCCC------cEEEcc-CChhhHH
Q 012647          378 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNK-----AQSDNMTNKWHVYMTKDG------RISLAG-LSLAKCE  445 (459)
Q Consensus       378 ~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~-----~~~~~ll~~~gI~v~~gg------Ris~~~-~~~e~i~  445 (459)
                      ++.+.+.+.+. ..      ....+..|+++|+.+..     ++...+++ +||.+.+.|      ||+.+. .++++++
T Consensus       329 ~~l~~l~~~~~-~~------~~~vrg~Gl~~~l~l~~~~~~~~~~~~~~~-~Gv~v~~~~~~~~~lr~~p~l~~t~~~i~  400 (412)
T TIGR02407       329 ERLDRIVAEYP-EL------IKQVRGRGLMQGIECGDGDLAGKIAKAAFE-NGLIIETSGPNDEVIKLLPPLTIDEETLQ  400 (412)
T ss_pred             HHHHHHHhhCC-Cc------eEeeecceeEEEEEecChHHHHHHHHHHHH-CCCEEeccCCCCCEEEEECCCCCCHHHHH
Confidence            43333332222 11      12234457888876631     33445555 699997643      776543 3899999


Q ss_pred             HHHHHHHHHHhh
Q 012647          446 YLADAIIDSYHN  457 (459)
Q Consensus       446 ~~~~~l~~~~~~  457 (459)
                      +++++|.+++++
T Consensus       401 ~~~~~l~~~l~~  412 (412)
T TIGR02407       401 QGLDILEQAVEE  412 (412)
T ss_pred             HHHHHHHHHHhC
Confidence            999999999864

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.80  E-value=4.6e-17  Score=160.26  Aligned_cols=217  Identities=13%  Similarity=0.038  Sum_probs=146.4

Q ss_pred             CCCCCCccc---HHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH---
Q 012647          120 KEYLPIEGL---AAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI---  193 (459)
Q Consensus       120 ~~Y~~~~g~---~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~---  193 (459)
                      +.|+. .|.   ..|++++|++..+        +++++  ++||++|+..+  +.+.+.+||+|++++|.|......   
T Consensus        42 ~~Y~r-~gnPt~~~lE~~lA~l~g~--------~~~~~--~~sG~~Ai~~a--l~all~~GD~Vl~~~~~y~~t~~~~~~  108 (377)
T TIGR01324        42 LTYGR-RGTLTHFALQDAMCELEGG--------AGCYL--YPSGLAAVTNS--ILAFVKAGDHVLMVDSAYEPTRYFCDI  108 (377)
T ss_pred             CcccC-CCCccHHHHHHHHHHHhCC--------CcEEE--ECcHHHHHHHH--HHHhcCCCCEEEEcCCCcHHHHHHHHH
Confidence            45652 343   5899999998542        46777  89999999998  555588999999999999876543   


Q ss_pred             -hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC
Q 012647          194 -FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ  272 (459)
Q Consensus       194 -~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~  272 (459)
                       ++..|+++..++.  .     +.+.+++++++   +++++++++|+||||.+   .++++|+++|+++|+++|+|++|.
T Consensus       109 ~~~~~gi~v~~~d~--~-----~~e~l~~~i~~---~tklV~lesp~Np~g~~---~dl~~I~~la~~~g~~livD~t~a  175 (377)
T TIGR01324       109 VLKRMGVDITYYDP--L-----IGEDIATLIQP---NTKVLFLEAPSSITFEI---QDIPAIAKAARNPGIVIMIDNTWA  175 (377)
T ss_pred             HHHhcCcEEEEECC--C-----CHHHHHHhcCC---CceEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCCc
Confidence             3567877766643  1     22778888775   78999999999999988   899999999999999999999976


Q ss_pred             CCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccC-CCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHH
Q 012647          273 GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY-AERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARI  351 (459)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (459)
                      ......      .+     ..+.++++.|++|.++-+ +...|++++   +++.++++.....    ......+......
T Consensus       176 ~g~~~~------pl-----~~gaDivv~S~tK~l~G~~d~~gG~v~~---~~~~~~~l~~~~~----~~G~~l~p~~a~~  237 (377)
T TIGR01324       176 AGLLFK------PL-----EHGVDISIQAGTKYLVGHSDIMIGTVVA---NARTWDQLREHSY----LMGQMVDADDAYT  237 (377)
T ss_pred             cccccC------cc-----ccCceEEEecCceeccCCCCceEEEEEe---CHHHHHHHHHHHH----HhCCCCCHHHHHH
Confidence            533211      11     224568999999999644 355676644   6665555543221    1111223322222


Q ss_pred             HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          352 VANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       352 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                      +..-++          .+....++..++...+.+.|+ +.
T Consensus       238 ~~rgl~----------tl~~R~~~~~~~a~~la~~L~-~~  266 (377)
T TIGR01324       238 TLRGLR----------TLGVRLKQHQESSLAIAKWLS-EQ  266 (377)
T ss_pred             HHhhhh----------hHHHHHHHHHHHHHHHHHHHH-hC
Confidence            222222          234445666666666777776 54

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.80  E-value=3.6e-17  Score=163.48  Aligned_cols=158  Identities=16%  Similarity=0.096  Sum_probs=119.3

Q ss_pred             CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh----hCCCC
Q 012647          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVP  200 (459)
Q Consensus       125 ~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~G~~  200 (459)
                      .....+|++.+|++...        +..++  +++|++++.++  +...+.+||+|+++.+.|......+.    ..|++
T Consensus        57 ~pt~~~Le~~lA~l~g~--------~~~l~--~ssG~~Ai~~a--l~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~  124 (425)
T PRK06084         57 NPTNDVLEQRVAALEGG--------VGALA--VASGMAAITYA--IQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIE  124 (425)
T ss_pred             CchHHHHHHHHHHHhCC--------CceeE--ehhHHHHHHHH--HHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeE
Confidence            34457899999999542        23445  78899999998  44457899999999999985444433    24555


Q ss_pred             eeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCC
Q 012647          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (459)
Q Consensus       201 v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~  280 (459)
                      +..++.       .|++.+++++++   +++++++++|+||||.+++   +++|.++|+++|+++|+|++|......   
T Consensus       125 v~~~d~-------~d~e~le~ai~~---~tklV~lesp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~~---  188 (425)
T PRK06084        125 TRFAAH-------DDIAALEALIDE---RTKAVFCESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPVLC---  188 (425)
T ss_pred             EEEECC-------CCHHHHHHHhcc---CCcEEEEeCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccC---
Confidence            555432       389999999976   6788888999999999965   788999999999999999997643221   


Q ss_pred             CChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012647          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (459)
Q Consensus       281 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (459)
                       .  .+     ....++++.|++|.++.+|.++|.+++
T Consensus       189 -~--p~-----~~gaDivv~S~tK~l~G~g~~~gG~v~  218 (425)
T PRK06084        189 -R--PF-----EHGADIVVHSLTKYIGGHGTSIGGIVV  218 (425)
T ss_pred             -C--hh-----hcCCCEEEECchhcccccccceeEEEE
Confidence             0  11     123468999999999999999999854

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.80  E-value=1.4e-16  Score=159.88  Aligned_cols=209  Identities=13%  Similarity=-0.043  Sum_probs=139.3

Q ss_pred             eecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHH
Q 012647           87 NLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRL  166 (459)
Q Consensus        87 ~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l  166 (459)
                      .|++|.+.-....+.+++.-.+++.+.+.... ..+++  ...+|++++++++..        +++++  +++||+++.+
T Consensus        27 ~~~~~~~~ip~~~~~~~~~~~~a~~~~~~~~~-~~~G~--~~~~fe~~lA~~~g~--------~~~v~--~~sGt~al~~   93 (438)
T PRK15407         27 PFVPGKSPIPPSGKVIDAKELQNLVDASLDFW-LTTGR--FNDAFEKKLAEFLGV--------RYALL--VNSGSSANLL   93 (438)
T ss_pred             cccCCCCCCCcCccCCCHHHHHHHHHHHHhCc-ccCCh--hHHHHHHHHHHHhCC--------CeEEE--ECCHHHHHHH
Confidence            36777762122222334433444444443322 22222  357899999999743        35777  8999999998


Q ss_pred             HHHHHH-------HhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCC
Q 012647          167 AAALIE-------RYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (459)
Q Consensus       167 ~~~~~~-------~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~  239 (459)
                      +...+.       .+.|||+|+++.|+|..+...+...|++++.++++ .+++.+|++.+++++++   +++++++++  
T Consensus        94 aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd-~~~~~id~~~le~~i~~---~tkaVi~~~--  167 (438)
T PRK15407         94 AFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVE-LPTYNIDASLLEAAVSP---KTKAIMIAH--  167 (438)
T ss_pred             HHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC-CCcCCcCHHHHHHHcCc---CCeEEEEeC--
Confidence            844332       24699999999999999999999999999999985 35788999999999875   677777543  


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcC--CcCcccCCCCcceEE
Q 012647          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY--SKNLGLYAERIGAMN  317 (459)
Q Consensus       240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~RiG~~~  317 (459)
                       ++|..   .++++|.++|++||++||+|+++......+   +. .    +.... ++.+.||  +|.+. .|.. |++ 
T Consensus       168 -~~G~p---~dl~~I~~la~~~gi~vIeDaa~a~G~~~~---g~-~----~G~~g-d~~~fSf~~~k~~~-~geG-G~l-  231 (438)
T PRK15407        168 -TLGNP---FDLAAVKAFCDKHNLWLIEDNCDALGSTYD---GR-M----TGTFG-DIATLSFYPAHHIT-MGEG-GAV-  231 (438)
T ss_pred             -CCCCh---hhHHHHHHHHHHCCCEEEEECccchhhhcC---Ce-e----eeccC-ceEEEeCCCCCCcc-ccCc-eEE-
Confidence             56654   688999999999999999999954332110   00 1    11111 3455566  46675 4553 676 


Q ss_pred             EEeCChhHHHHHHH
Q 012647          318 VVCSSSDLAARVKS  331 (459)
Q Consensus       318 ~v~~~~~~~~~~~~  331 (459)
                       ++.++++.+++..
T Consensus       232 -~t~d~~l~~~~~~  244 (438)
T PRK15407        232 -FTNDPLLKKIIES  244 (438)
T ss_pred             -EECCHHHHHHHHH
Confidence             5677776555443

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.80  E-value=3.6e-17  Score=162.44  Aligned_cols=153  Identities=20%  Similarity=0.187  Sum_probs=118.8

Q ss_pred             cccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----hhhCCCCe
Q 012647          126 EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARVPW  201 (459)
Q Consensus       126 ~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~G~~v  201 (459)
                      .-...|.+.+|++..+        +..+.  +++|+.|+.++  +.+.+.+||+|+++.++|......    +...|+++
T Consensus        61 Ptv~~lE~~la~leg~--------~~av~--~~SG~aAi~~a--l~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v  128 (432)
T PRK06702         61 PTLAAFEQKLAELEGG--------VGAVA--TASGQAAIMLA--VLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDV  128 (432)
T ss_pred             cHHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEE
Confidence            3467899999999644        23556  89999999998  555688999999999999755554    67789998


Q ss_pred             eeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCC
Q 012647          202 SEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN  281 (459)
Q Consensus       202 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~  281 (459)
                      +.++.      .+|++.++++|++   +|++|++.+|+||++.+   .++++|+++|++||+++|+|++|..-..     
T Consensus       129 ~~vd~------~~d~~~l~~~I~~---~Tk~I~~e~pgnP~~~v---~Di~~I~~iA~~~gi~livD~T~~tP~~-----  191 (432)
T PRK06702        129 TFFNP------NLTADEIVALAND---KTKLVYAESLGNPAMNV---LNFKEFSDAAKELEVPFIVDNTLATPYL-----  191 (432)
T ss_pred             EEECC------CCCHHHHHHhCCc---CCeEEEEEcCCCccccc---cCHHHHHHHHHHcCCEEEEECCCCchhh-----
Confidence            88853      3689999999986   78888889999999999   5588899999999999999999742111     


Q ss_pred             ChhHHHHHHhcCCeEEEEEcCCc-----CcccCCCCc
Q 012647          282 DASSVRLFATRGMELLVAQSYSK-----NLGLYAERI  313 (459)
Q Consensus       282 ~~~~~~~~~~~~~~~i~~~S~SK-----~~~~~G~Ri  313 (459)
                          .+.+  ...-+|++.|+||     ..+++|.++
T Consensus       192 ----~~pl--~~GADIvv~S~TKy~~Ghsd~l~G~v~  222 (432)
T PRK06702        192 ----CQAF--EHGANIIVHSTTKYIDGHASSLGGIVI  222 (432)
T ss_pred             ----CChh--hcCCCEEEEccccccCCCcceeceEEE
Confidence                1111  2234699999999     666666655

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.79  E-value=3.1e-17  Score=166.14  Aligned_cols=327  Identities=13%  Similarity=0.130  Sum_probs=194.4

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCC---Ccc------cHH-HHHHHHHHHhcCCCCccccCce
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP---IEG------LAA-FNKVTAELLFGADNSVLKEQRV  152 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~---~~g------~~~-lr~aia~~l~~~~~~~~~~~~i  152 (459)
                      ...|+|...++       .++|.+++++...+.......++.   ..|      +++ .|+.++++++.+      ++++
T Consensus        34 ~~~l~l~~sen-------~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~------~~~~  100 (452)
T PTZ00094         34 IEGLELIASEN-------FTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLD------PEEW  100 (452)
T ss_pred             HcCeeEecccc-------cCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCC------cccc
Confidence            47899998775       238889999888774322112211   111      232 456777777553      4555


Q ss_pred             EE-eecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhh----------CCCCeeeeeeecCCCCCCCHHHHHH
Q 012647          153 AT-VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND----------ARVPWSEYRYYDPKTVGLDFEGMIA  221 (459)
Q Consensus       153 ~~-~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~----------~G~~v~~v~~~~~~~~~~d~e~l~~  221 (459)
                      .+ ++.++|++++.++  +.+.+.+||+|++....+..+......          .+.++..++++  .++.+|++++++
T Consensus       101 ~~~~~~~sgt~an~~v--~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~--~~g~id~~~L~~  176 (452)
T PTZ00094        101 GVNVQPYSGSPANFAV--YTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVN--EKGLIDYDKLEE  176 (452)
T ss_pred             eeecCCCchHHHHHHH--HHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccC--CCCCcCHHHHHH
Confidence            44 2237899999997  344477999999987776655433211          11334445553  347899999999


Q ss_pred             HHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEc
Q 012647          222 DIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS  301 (459)
Q Consensus       222 ~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S  301 (459)
                      .+++.  +++++++.  ++.+|..   .++++|.++|+++|+++++|++ +.++.-+.+.....      ....++++.|
T Consensus       177 ~l~~~--~~~lvi~~--~s~~g~~---~di~~I~~i~~~~ga~l~vDaa-q~~G~i~~~~~~~~------~~~~D~l~~S  242 (452)
T PTZ00094        177 LAKAF--RPKLIIAG--ASAYPRD---IDYKRFREICDSVGAYLMADIA-HTSGLVAAGVLPSP------FPYADVVTTT  242 (452)
T ss_pred             HHHHh--CCCEEEEe--CCCCCCc---cCHHHHHHHHHHcCCEEEEecc-chhccccCCCCCCC------CCCCcEEEcC
Confidence            99652  33445442  4459988   6677888999999999999999 55543211110001      1135688999


Q ss_pred             CCcCc-ccCCCCcceEEEEeCChhHHHHHHHHHHhhccccc-cCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012647          302 YSKNL-GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMY-SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV  379 (459)
Q Consensus       302 ~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~  379 (459)
                      ++|++ |+.|   |++++   +++..+.+...........+ ++++.....+....|+.-   .  ....+++++++.++
T Consensus       243 ~hK~l~GP~G---g~l~~---~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~---~--~~~~~~~~~~i~~l  311 (452)
T PTZ00094        243 THKSLRGPRS---GLIFY---RKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEV---Q--SPEWKEYAKQVLKN  311 (452)
T ss_pred             CccCCCCCCc---eEEEE---ecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHH---h--ChhHHHHHHHHHHH
Confidence            99976 5443   77654   44433333332221111111 122222222222222110   0  12345778889999


Q ss_pred             HHHHHHHHhhccCCCCCcccccC--Cccee--ee--cCCCHHHHHHHHhcccEEEcC------------CC-cEEEccCC
Q 012647          380 RQKLFDSLSAKDKSGKDWSFILR--QIGMF--SF--TGLNKAQSDNMTNKWHVYMTK------------DG-RISLAGLS  440 (459)
Q Consensus       380 ~~~l~~~L~~~~g~~~~~~~~~~--~~g~f--~~--~~l~~~~~~~ll~~~gI~v~~------------gg-Ris~~~~~  440 (459)
                      +++|.+.|. +.|    +++..+  .....  .+  .+.+.+.+..+++++||.+..            ++ |+|...++
T Consensus       312 ~~~l~~~L~-~~g----~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~t  386 (452)
T PTZ00094        312 AKALAAALE-KRG----YDLVTGGTDNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALT  386 (452)
T ss_pred             HHHHHHHHH-hCC----cEEecCCCCCceEeecCCcCCCCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHH
Confidence            999999998 766    343321  11111  11  144667777777878999942            23 89875443


Q ss_pred             -----hhhHHHHHHHHHHHHh
Q 012647          441 -----LAKCEYLADAIIDSYH  456 (459)
Q Consensus       441 -----~e~i~~~~~~l~~~~~  456 (459)
                           ++|++++++.|.++++
T Consensus       387 t~g~~~~di~~l~~~l~~~~~  407 (452)
T PTZ00094        387 TRGAKEKDFKFVADFLDRAVK  407 (452)
T ss_pred             hCCCCHHHHHHHHHHHHHHHH
Confidence                 7999999999999886

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.79  E-value=2.3e-16  Score=158.43  Aligned_cols=345  Identities=12%  Similarity=0.081  Sum_probs=194.0

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhc-CCCCC-CCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GENKE-YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~-Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...||+..|..-...|..  +|.|.+++++.++. ...+. +.......+|-+.+++.+....+.   .+.+.+ .+++
T Consensus        38 G~~ylD~~~g~~~~~lGh~--~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~---~~~~~f-~~~s  111 (425)
T PRK09264         38 GKEYIDFFAGAGALNYGHN--NPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEETILKPRGL---DYKVQF-TGPT  111 (425)
T ss_pred             CCEeeecccchhhccCCCC--CHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHhhcCCcCC---CceEEE-eCCC
Confidence            4578898888542333443  78899999887753 11111 111222234444444432111111   124544 1479


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhC----------C---CCeeeeeeecCCCC-CCCHHHHHHHHHc
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA----------R---VPWSEYRYYDPKTV-GLDFEGMIADIKA  225 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~----------G---~~v~~v~~~~~~~~-~~d~e~l~~~i~~  225 (459)
                      |++|++.+.++.+.+....+|+....+|.+.....-..          |   ..+..+|....... .-|++.+++.+.+
T Consensus       112 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~  191 (425)
T PRK09264        112 GTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLED  191 (425)
T ss_pred             HHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHh
Confidence            99999999988876655578999998887654321111          1   12344444211000 1267788888864


Q ss_pred             CC---CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEc
Q 012647          226 AP---GGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS  301 (459)
Q Consensus       226 ~~---~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S  301 (459)
                      ..   +...++|+-....-.|. +++++.+++|.++|++||+++|+||++.+++..+   ..+.... .+..++++   +
T Consensus       192 ~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG---~~~~~~~-~~v~PDi~---t  264 (425)
T PRK09264        192 SSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTG---TFFSFER-AGITPDIV---T  264 (425)
T ss_pred             ccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCcccc---HHHHHhh-cCCCCCEE---E
Confidence            21   24556666666666776 5789999999999999999999999998876332   1222221 12234433   7


Q ss_pred             CCcCcccCCCCcceEEEEeCChhHHHHHHHHHHh-hccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012647          302 YSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKR-LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR  380 (459)
Q Consensus       302 ~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~  380 (459)
                      +||.++..|+++|++++   +++. .    .+.. ....++ +.+.++..++...|.+     .|.+  ....++.+++.
T Consensus       265 ~~K~l~~~G~pigav~~---~~~i-~----~~~~~~~~~T~-~gnp~~~aaa~a~l~~-----~~~~--~~l~~~~~~~g  328 (425)
T PRK09264        265 LSKSISGYGLPMALVLI---KPEL-D----VWKPGEHNGTF-RGNNLAFVTATAALEE-----YWSD--DAFEKEVKAKG  328 (425)
T ss_pred             eccccCCCccceEEEEE---chhh-h----ccCCCccCCCC-CCCHHHHHHHHHHHHH-----HHhh--hHHHHHHHHHH
Confidence            79999955999999966   6552 2    1211 111222 2333333333233211     0111  13444555555


Q ss_pred             HHHHHHHhhcc--CCCCCcccccCCcceeeecCCC-H----HHHHHHHhcccEEEcCCC----cEEEc-c--CChhhHHH
Q 012647          381 QKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGLN-K----AQSDNMTNKWHVYMTKDG----RISLA-G--LSLAKCEY  446 (459)
Q Consensus       381 ~~l~~~L~~~~--g~~~~~~~~~~~~g~f~~~~l~-~----~~~~~ll~~~gI~v~~gg----Ris~~-~--~~~e~i~~  446 (459)
                      +++.+.|+ ++  ..|. +.......|+++++.+. .    .+...+++ +||.+.+.|    ||.+. .  .+++++++
T Consensus       329 ~~l~~~l~-~l~~~~~~-~~~~vrg~Gl~~~i~l~~~~~~~~l~~~~~~-~Gv~~~~~~~~~~~lr~~p~l~~t~~ei~~  405 (425)
T PRK09264        329 ELVRERLE-EIAAKYPG-LGAEVRGRGMMQGIDFGDGELAGKIAAEAFE-NGLIIETSGPEDEVVKLLPPLTIDEEELEE  405 (425)
T ss_pred             HHHHHHHH-HHHHhCCC-ceecceecccEEEEEecChHHHHHHHHHHHH-CCCEEeccCCCCCEEEEeCCCCCCHHHHHH
Confidence            55555554 33  1111 11112334666666552 1    33455555 599997754    55554 2  37999999


Q ss_pred             HHHHHHHHHhhc
Q 012647          447 LADAIIDSYHNV  458 (459)
Q Consensus       447 ~~~~l~~~~~~~  458 (459)
                      ++++|.++++++
T Consensus       406 ~~~~l~~~l~~~  417 (425)
T PRK09264        406 GLDILEEAVAEV  417 (425)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998753

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.79  E-value=2e-16  Score=159.57  Aligned_cols=342  Identities=11%  Similarity=0.033  Sum_probs=195.4

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...||+..|..-..-|+.  +|.|.+++.+.+++..  .+.......+.+..+++.+....... ..+.+.+  +++|+
T Consensus        55 G~~ylD~~~g~~~~~lGh~--~p~v~~ai~~q~~~~~--~~~~~~~~~~~~~~la~~l~~~~p~~-~~~~v~f--~~sGs  127 (443)
T PRK06058         55 GNRLIDLGSGIAVTSVGNS--APRVVEAVREQVARFT--HTCFMVTPYEGYVAVAEQLNRLTPGD-HEKRSAL--FNSGA  127 (443)
T ss_pred             CCEEEEcCcchhhhccCCC--CHHHHHHHHHHHHhcc--CccccccCCHHHHHHHHHHHHhCCCC-CCCEEEE--eCCcH
Confidence            3568888887542333443  7899999988886521  11111122244444555543322100 0146777  89999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhh-CC--------C-----CeeeeeeecCCC----CCCC--------
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-AR--------V-----PWSEYRYYDPKT----VGLD--------  215 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~G--------~-----~v~~v~~~~~~~----~~~d--------  215 (459)
                      +|++.+.++...+...++|+...++|.++...... .+        .     .+..+|.....+    ...+        
T Consensus       128 eA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (443)
T PRK06058        128 EAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARA  207 (443)
T ss_pred             HHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHH
Confidence            99999988877666668999999999877533221 11        1     122222210100    0011        


Q ss_pred             HHHHHHHHHcCCCCcEEEEeCCCCCCC-CCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC
Q 012647          216 FEGMIADIKAAPGGSFILLHGCAHNPT-GID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (459)
Q Consensus       216 ~e~l~~~i~~~~~~~~~ii~~~p~NPT-G~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~  293 (459)
                      ++.+++.+.  +++...+| ..|-+.. |.+ ++++.+++|.++|++||+++|.||++.+++..+   ..+... ..+..
T Consensus       208 ~~~l~~~~~--~~~iAavi-~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG---~~fa~~-~~gv~  280 (443)
T PRK06058        208 ITVIEKQVG--ADNLAAVI-IEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTG---AWFACE-HEGIV  280 (443)
T ss_pred             HHHHHHhhC--CCceEEEE-ECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCh---hhhHHH-hcCCC
Confidence            122222222  23455555 4555555 444 468889999999999999999999999886432   122222 12233


Q ss_pred             CeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHH
Q 012647          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMA  373 (459)
Q Consensus       294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~  373 (459)
                      ++++   +++|.++ .|+++|++++   +++.    .+.+.......+.+.+.+++.++...|+.  +    ++  +...
T Consensus       281 PDiv---~~gK~l~-~G~Pi~av~~---~~~i----~~~~~~~~~~~T~~gnpl~~aaa~a~L~~--~----~~--~~l~  341 (443)
T PRK06058        281 PDLI---TTAKGIA-GGLPLSAVTG---RAEI----MDAPHPGGLGGTYGGNPVACAAALAAIET--I----EE--DDLV  341 (443)
T ss_pred             CCEE---EEccccc-CCCccEEEEE---cHHH----HhhccCCCCCCCCCCCHHHHHHHHHHHHH--H----HH--cCHH
Confidence            4444   4589999 8999999876   7774    33333222223335566666666555431  1    01  2345


Q ss_pred             HHHHHHHHHHHHHHhhccCCC-CCcccccCCcceeeec--CC-----CHH----HHHHHHhcccEEEcCCC------cEE
Q 012647          374 GRIKNVRQKLFDSLSAKDKSG-KDWSFILRQIGMFSFT--GL-----NKA----QSDNMTNKWHVYMTKDG------RIS  435 (459)
Q Consensus       374 ~~~~~~~~~l~~~L~~~~g~~-~~~~~~~~~~g~f~~~--~l-----~~~----~~~~ll~~~gI~v~~gg------Ris  435 (459)
                      ++.+++.++|.+.|+ ++.-. +-+..+...|.++.+.  .-     +.+    +.+.+++ +||.+.+++      |+.
T Consensus       342 ~~~~~~g~~l~~~L~-~l~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~-~Gv~~~~~~~~~~~lr~~  419 (443)
T PRK06058        342 ARARQIEALMTDRLR-ALAAEDDRIGDVRGRGAMIAIELVKPGTTEPDAELTKALAAAAHA-AGVIVLTCGTYGNVIRLL  419 (443)
T ss_pred             HHHHHHHHHHHHHHH-HHHhhCCcEEeeeccceEEEEEEecCCCCCCcHHHHHHHHHHHHH-CCeEEeccCCCCCEEEEE
Confidence            666666777777776 54100 0012245566555331  11     122    2344555 699998753      664


Q ss_pred             Ec-cCChhhHHHHHHHHHHHHhhc
Q 012647          436 LA-GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       436 ~~-~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      .+ ..+++++++++++|.++++++
T Consensus       420 Ppl~~t~~~i~~~~~~l~~~l~~~  443 (443)
T PRK06058        420 PPLVIGDELLREGLDVLEAALADL  443 (443)
T ss_pred             CCCccCHHHHHHHHHHHHHHHHhC
Confidence            22 239999999999999998764

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.79  E-value=7.4e-17  Score=159.24  Aligned_cols=165  Identities=16%  Similarity=0.172  Sum_probs=120.7

Q ss_pred             ccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchH----HHhhhCCCCee
Q 012647          127 GLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK----NIFNDARVPWS  202 (459)
Q Consensus       127 g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~----~~~~~~G~~v~  202 (459)
                      -...|++.++++....       ..++   +++|+.++.++   +..+.|||+|++++|.|....    ..+...|++++
T Consensus        51 ~~~~Le~~la~l~g~~-------~al~---~~SG~~Al~~~---l~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~  117 (380)
T PRK06176         51 TRFALEELIADLEGGV-------KGFA---FASGLAGIHAV---FSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCT  117 (380)
T ss_pred             hHHHHHHHHHHHhCCC-------CEEE---ECCHHHHHHHH---HHHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEE
Confidence            4678999999986432       3344   57777888765   345789999999999987543    34556788877


Q ss_pred             eeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCC
Q 012647          203 EYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDND  282 (459)
Q Consensus       203 ~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~  282 (459)
                      .++.       .|++.+++++++   +++++++++|+||||.+   .++++|+++|+++|+++|+|++|.......    
T Consensus       118 ~vd~-------~d~e~l~~ai~~---~t~lV~lesP~Nptg~~---~di~~I~~la~~~gi~vivD~t~a~~~~~~----  180 (380)
T PRK06176        118 IIDT-------SDLSQIKKAIKP---NTKALYLETPSNPLLKI---TDLAQCASVAKDHGLLTIVDNTFATPYYQN----  180 (380)
T ss_pred             EcCC-------CCHHHHHHhcCc---CceEEEEECCCCCCcee---cCHHHHHHHHHHcCCEEEEECCccccccCC----
Confidence            7754       378999998875   78889999999999999   567789999999999999999987543321    


Q ss_pred             hhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHH
Q 012647          283 ASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARV  329 (459)
Q Consensus       283 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~  329 (459)
                        .+     ....++++.|++|.++.+|-.+|.++ ++.+++..+++
T Consensus       181 --p~-----~~gaDivv~S~tK~l~g~~d~~gG~v-v~~~~~~~~~~  219 (380)
T PRK06176        181 --PL-----LLGADIVVHSGTKYLGGHSDVVAGLV-TTNNEALAQEI  219 (380)
T ss_pred             --cc-----ccCCCEEEecCceeccCCccceeeEE-EecHHHHHHHH
Confidence              11     12346889999999986765555543 34555644444

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.78  E-value=1.3e-16  Score=156.87  Aligned_cols=217  Identities=11%  Similarity=0.035  Sum_probs=143.3

Q ss_pred             CCCCCCcccH---HHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----
Q 012647          120 KEYLPIEGLA---AFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----  192 (459)
Q Consensus       120 ~~Y~~~~g~~---~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~----  192 (459)
                      +.|+ ..|.+   .|++.++.+-.+       +..++   +.+|++|+..+  +++.+.+||+|++++|.|+++..    
T Consensus        56 y~Ys-R~gnPt~~~Le~~la~le~~-------~~~v~---~sSG~aAi~~~--l~all~~GD~Vlv~~~~Y~~~~~l~~~  122 (395)
T PRK05967         56 YTYG-TRGTPTTDALCKAIDALEGS-------AGTIL---VPSGLAAVTVP--FLGFLSPGDHALIVDSVYYPTRHFCDT  122 (395)
T ss_pred             CccC-CCCChHHHHHHHHHHHHhCC-------CCEEE---ECcHHHHHHHH--HHHhcCCCCEEEEccCCcHHHHHHHHH
Confidence            4564 33433   466666655221       34455   46689999988  56668899999999999998765    


Q ss_pred             HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC
Q 012647          193 IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ  272 (459)
Q Consensus       193 ~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~  272 (459)
                      .++..|+++..++..       +.+.+++++++   +++++++++|+||++.+   .++++|+++|+++|+++++|++|.
T Consensus       123 ~l~~~Gi~v~~vd~~-------~~e~l~~al~~---~TklV~lesPsNP~l~v---~dl~~I~~la~~~g~~vvVD~t~a  189 (395)
T PRK05967        123 MLKRLGVEVEYYDPE-------IGAGIAKLMRP---NTKVVHTEAPGSNTFEM---QDIPAIAEAAHRHGAIVMMDNTWA  189 (395)
T ss_pred             HHHhcCeEEEEeCCC-------CHHHHHHhcCc---CceEEEEECCCCCCCcH---HHHHHHHHHHHHhCCEEEEECCcc
Confidence            456789888887541       34778888875   78999999999998877   999999999999999999999987


Q ss_pred             CCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHH
Q 012647          273 GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARI  351 (459)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (459)
                      ...+..      ++     ..+-++++.|.+|.++-.| .-.|++   +.+++..+++.....    ......+...+..
T Consensus       190 ~p~~~~------pl-----~~GaDivv~S~tKy~~Gh~d~~~G~v---~~~~~~~~~l~~~~~----~~G~~~~p~da~l  251 (395)
T PRK05967        190 TPLYFR------PL-----DFGVDISIHAATKYPSGHSDILLGTV---SANEKCWPQLLEAHG----TLGLCAGPDDTYQ  251 (395)
T ss_pred             CceecC------hh-----HcCCCEEEEecccccCCCCCeeEEEE---EcCHHHHHHHHHHHH----HcCCCCCHHHHHH
Confidence            654221      11     2245699999999975333 445544   335664444432222    1122333333222


Q ss_pred             HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          352 VANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       352 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                      +..-|          +.+....++..++...+.+.|+ +.
T Consensus       252 ~~rgl----------~Tl~lR~~~~~~na~~lA~~L~-~h  280 (395)
T PRK05967        252 ILRGL----------RTMGIRLEHHRKSALEIARWLE-GR  280 (395)
T ss_pred             HHcCc----------ccHHHHHHHHHHHHHHHHHHHH-hC
Confidence            22222          2244555666677777777787 55

>PLN03032 serine decarboxylase; Provisional

Probab=99.78  E-value=9.8e-17  Score=156.53  Aligned_cols=325  Identities=12%  Similarity=0.047  Sum_probs=198.2

Q ss_pred             eecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCC-------CcccHHHHHHHHHHHhcCCCCccccCce--EEeec
Q 012647           87 NLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP-------IEGLAAFNKVTAELLFGADNSVLKEQRV--ATVQG  157 (459)
Q Consensus        87 ~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~-------~~g~~~lr~aia~~l~~~~~~~~~~~~i--~~~~t  157 (459)
                      ....|.|.+.+    ....+.+++...+.++...-+..       ..-..+.++.+++++...      ++++  ++  |
T Consensus        24 ~~~~gy~~~~~----~~~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~------~~~~~G~f--T   91 (374)
T PLN03032         24 SVHFGYPYNLD----FDYGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELE------KDEYWGYI--T   91 (374)
T ss_pred             hhccCCCchhc----cChHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCC------CccCCEEE--e
Confidence            34566664332    24456777777664321111111       112245555566655432      5665  77  9


Q ss_pred             ccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCC
Q 012647          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (459)
Q Consensus       158 ~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~  237 (459)
                      +|||+|+.++....+...++..|+++.-.+......++..|.+++.||+  +.++.+|++.|+++|++....+.+++++.
T Consensus        92 sGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~~lg~~~~~V~~--d~~g~id~~~L~~~i~~~~~~~~lvv~ta  169 (374)
T PLN03032         92 TCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMEAVKVPT--LPSGEIDYDDLERALAKNRDKPAILNVNI  169 (374)
T ss_pred             CchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHHHHcCCCCeEeee--CCCCcCcHHHHHHHHHHcCCCCEEEEEEe
Confidence            9999999988544333346678889888888888889999999999999  45678999999999986433577888888


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcC-----CeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc-cCCC
Q 012647          238 AHNPTGIDPTPEQWEKIADVIQEKN-----HIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG-LYAE  311 (459)
Q Consensus       238 p~NPTG~~~s~~~l~~i~~l~~~~~-----~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~  311 (459)
                      .+|+||.+   +++++|+++|+++|     +++++|.+|...... .....+.+. +  ...-+.++.|.+|.++ +.| 
T Consensus       170 gtt~tG~i---dpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p-~~~~~~~~~-~--~~~vDSis~s~HK~~g~P~g-  241 (374)
T PLN03032        170 GTTVKGAV---DDLDRILRILKELGYTEDRFYIHCDGALFGLMMP-FVSRAPEVT-F--RKPIGSVSVSGHKFLGCPMP-  241 (374)
T ss_pred             cCcCCccC---CCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhh-ccCCCcccC-C--CcCCcEEEECcccccCCCcC-
Confidence            99999999   99999999999996     589999997654321 100111110 1  1124567789999998 555 


Q ss_pred             CcceEEEEeCChhHHHHHHHHHHhh--cccc-ccCCchH---HHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          312 RIGAMNVVCSSSDLAARVKSQLKRL--ARPM-YSNPPVH---GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD  385 (459)
Q Consensus       312 RiG~~~~v~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  385 (459)
                       +|.+++   .....+.+.....-+  ...+ .++-+..   ...+....+.        .+.+.++.++..++.+++.+
T Consensus       242 -~G~ll~---r~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G--------~~g~~~~~~~~~~~a~~l~~  309 (374)
T PLN03032        242 -CGVALT---RKKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKG--------YRGIKRDVQHCMRNAHYLKD  309 (374)
T ss_pred             -eEEEEE---EchhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHHHhC--------HHHHHHHHHHHHHHHHHHHH
Confidence             888865   233232221110000  0000 1111111   1111111122        24567888888889999999


Q ss_pred             HHhhccCCCCCccc-ccCCcceeeecCCCHHHHHHHHhcccEEEcCCC-cEEEcc-CChhhHHHHHHHHHH
Q 012647          386 SLSAKDKSGKDWSF-ILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDG-RISLAG-LSLAKCEYLADAIID  453 (459)
Q Consensus       386 ~L~~~~g~~~~~~~-~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~gg-Ris~~~-~~~e~i~~~~~~l~~  453 (459)
                      .|+ +.+    +.. ..|.....+|..-..+.   +.+++.+...++. ||+++. .+.+.++++++-|++
T Consensus       310 ~l~-~~~----~~~~~~p~~~~V~f~~~~~~~---~~~~w~l~~~~~~~hi~vm~~~~~~~id~fi~dl~~  372 (374)
T PLN03032        310 RLT-EAG----LTCRLNELSSTVVFERPMDEA---FIKKWQLACEGDIAHVVVMPNVTVEKLDEFVEELVE  372 (374)
T ss_pred             HHH-hCC----CcEEECCCceEEEEcCCCcHh---HhheeeecccCCEEEEEECCCCCHHHHHHHHHHHhc
Confidence            998 776    343 44554444554332221   3344555544433 888765 477888888888765

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.77  E-value=6.2e-16  Score=148.74  Aligned_cols=196  Identities=21%  Similarity=0.152  Sum_probs=145.8

Q ss_pred             CcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEE
Q 012647          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL  181 (459)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vl  181 (459)
                      +.....+++.+.++.++   +..-.-..+|.+++++|+..        ++.+.  +++||.|++++.+.+. +.|||+||
T Consensus        13 i~~~e~~~v~~vl~sg~---i~~G~~v~~FE~~~ae~~G~--------k~ava--~~sgT~AL~laL~al~-ig~GDeVI   78 (374)
T COG0399          13 IGEEELAAVQEVLKSGW---LTGGPFVRRFEQAFAEYLGV--------KYAVA--VSSGTAALHLALLALA-IGPGDEVI   78 (374)
T ss_pred             cchHHHHHHHHHHHcCC---eecChHHHHHHHHHHHHhCC--------CeEEE--ecChHHHHHHHHHhcC-CCCCCEEE
Confidence            45777888888887654   22334568999999999754        45666  8999999999955444 77999999


Q ss_pred             EcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc
Q 012647          182 ISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK  261 (459)
Q Consensus       182 v~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~  261 (459)
                      +++-+|....+.+-..|++++.++++ .+++.+|++.++++|++   +++.|+.   -+=-|..   .++++|.++|++|
T Consensus        79 ~ps~TfvATan~i~~~Ga~PVFvDid-~~T~nid~~~ie~aIt~---~tKAIip---Vhl~G~~---~dm~~i~~la~~~  148 (374)
T COG0399          79 VPSFTFVATANAVLLVGAKPVFVDID-PDTLNIDPDLIEAAITP---RTKAIIP---VHLAGQP---CDMDAIMALAKRH  148 (374)
T ss_pred             ecCCchHHHHHHHHHcCCeEEEEecC-CcccCCCHHHHHHHccc---CCeEEEE---ehhccCC---CCHHHHHHHHHHc
Confidence            99999999999999999999999996 56789999999999997   6777773   2334555   6888899999999


Q ss_pred             CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcC--CcCcccCCCCcceEEEEeCChhHHHHHHHHHH
Q 012647          262 NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY--SKNLGLYAERIGAMNVVCSSSDLAARVKSQLK  334 (459)
Q Consensus       262 ~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~  334 (459)
                      |++||+|.+ +.++..-   ....+   ...  .++.++||  .|.++ +|. =|.+  ++.++++.++++....
T Consensus       149 ~l~vIEDaA-qa~Ga~y---~gk~v---Gt~--Gd~~~fSF~~~K~it-tgE-GGav--~tnd~ela~k~~~lr~  210 (374)
T COG0399         149 GLPVIEDAA-QAHGATY---KGKKV---GSF--GDIGAFSFHATKNLT-TGE-GGAV--VTNDEELAEKARSLRN  210 (374)
T ss_pred             CCeEEEEcc-hhccCee---cCccc---ccc--cceEEEEecCCCCcc-ccC-ceEE--EeCCHHHHHHHHHHHH
Confidence            999999999 6665321   00011   111  23455565  78888 552 3444  5888887777665433

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.77  E-value=5.9e-17  Score=174.33  Aligned_cols=335  Identities=13%  Similarity=0.109  Sum_probs=202.5

Q ss_pred             ccCCCCCCccCc-HHHHHHHHHHhhcCCC---CCCC----CCcccHHHHHHHHHHHhcCCCCccccC-ceEEeecccchh
Q 012647           92 AYRTEELQPYVL-DVVKKAENLMLERGEN---KEYL----PIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGTG  162 (459)
Q Consensus        92 ~~~~~~~~~~~~-~~v~~a~~~~~~~~~~---~~Y~----~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt~  162 (459)
                      .|+|..+..+.+ ..|.+++...+.....   ..|.    ...-+++.|+.++++++...     ++ +|++  |+|+|+
T Consensus        36 iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~-----~~~~VvF--tsnaT~  108 (805)
T PLN02724         36 VYLDHAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPP-----SDYACVF--TSGATA  108 (805)
T ss_pred             EeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCc-----cceEEEE--eCChHH
Confidence            566666655434 4556655555432100   1111    12346789999999987541     23 4788  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHH---hhhCCCCeeeeeeecC------CCCCCCH--HHHHHHHH----c--
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNI---FNDARVPWSEYRYYDP------KTVGLDF--EGMIADIK----A--  225 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~---~~~~G~~v~~v~~~~~------~~~~~d~--e~l~~~i~----~--  225 (459)
                      ++++++..+ .+.+||+|+++.-.|......   ++..|+++..+|++.+      +...+++  +.+++.++    .  
T Consensus       109 alnlva~~l-~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~  187 (805)
T PLN02724        109 ALKLVGETF-PWSSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKRE  187 (805)
T ss_pred             HHHHHHHHC-CCCCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhcccc
Confidence            999985433 256899999987666554433   3456999999887411      1223333  55665532    0  


Q ss_pred             -CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc-----CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012647          226 -APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK-----NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (459)
Q Consensus       226 -~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~-----~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~  299 (459)
                       ..++++++.++..+|-||.+++.+.++++.+.++++     ++++++|.+ |..++.+.+         +...+.++++
T Consensus       188 ~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaa-Q~~g~~piD---------v~~~~~Dfl~  257 (805)
T PLN02724        188 DDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAA-KGCGTSPPD---------LSRYPADFVV  257 (805)
T ss_pred             ccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehh-hhcCCCCCC---------hhhcCCCEEE
Confidence             123567999999999999998776544444333222     368999999 777654332         2233568999


Q ss_pred             EcCCcCcc-cCCCCcceEEEEeCChhHHHHHHHHHHhh--------------------ccccccCCchHHHHHHHHHhCC
Q 012647          300 QSYSKNLG-LYAERIGAMNVVCSSSDLAARVKSQLKRL--------------------ARPMYSNPPVHGARIVANVVGN  358 (459)
Q Consensus       300 ~S~SK~~~-~~G~RiG~~~~v~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~L~~  358 (459)
                      .|++|.+| +.|  +|++++   .++..+.+...+...                    .+...++++..+...+...|  
T Consensus       258 ~S~HK~~GgP~G--~G~L~v---r~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal--  330 (805)
T PLN02724        258 VSFYKIFGYPTG--LGALLV---RRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGF--  330 (805)
T ss_pred             EecceeccCCCC--ceEEEE---ehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHH--
Confidence            99999998 667  799976   555433322110000                    00001122222222222222  


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---CcccccC---------Ccceeeec--CC-----CHHHHHH
Q 012647          359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGK---DWSFILR---------QIGMFSFT--GL-----NKAQSDN  419 (459)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~---~~~~~~~---------~~g~f~~~--~l-----~~~~~~~  419 (459)
                       ++...  -.++++.++.+++.+++.+.|+ ++....   .+.++.+         +++.+.|.  +.     ....+.+
T Consensus       331 -~~l~~--ig~~~I~~~~~~L~~~l~~~L~-~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~  406 (805)
T PLN02724        331 -KLLNR--LTISAIAMHTWALTHYVANSLR-NLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEK  406 (805)
T ss_pred             -HHHHH--hChHHHHHHHHHHHHHHHHHHH-hccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHH
Confidence             11111  1357888999999999999998 763100   1334322         34555443  32     3556777


Q ss_pred             HHhcccEEEcCC-----------------------------------------C--cEEEccC-ChhhHHHHHHHHHHHH
Q 012647          420 MTNKWHVYMTKD-----------------------------------------G--RISLAGL-SLAKCEYLADAIIDSY  455 (459)
Q Consensus       420 ll~~~gI~v~~g-----------------------------------------g--Ris~~~~-~~e~i~~~~~~l~~~~  455 (459)
                      +++++||.++.|                                         |  |+||+.+ |.+|+++++++|++..
T Consensus       407 l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~  486 (805)
T PLN02724        407 LASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSF  486 (805)
T ss_pred             HHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence            777778877321                                         4  9999877 8899999999999865

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.76  E-value=2.2e-16  Score=151.70  Aligned_cols=329  Identities=16%  Similarity=0.153  Sum_probs=204.2

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC-CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL-PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~-~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      ..-||+..+.--...++.  +|.|.+++++.+.++.  .|. |++..-++-+.+.+.+..       -+.|-+  +++||
T Consensus        53 n~YIDy~~~~Gp~ilGH~--~p~V~~Av~~~l~~G~--~fg~Pte~Ei~~Aell~~~~p~-------~e~vrf--vnSGT  119 (432)
T COG0001          53 NEYIDYVLGWGPLILGHA--HPAVVEAVQEQLERGL--SFGAPTELEVELAELLIERVPS-------IEKVRF--VNSGT  119 (432)
T ss_pred             CEeeehhccCcccccCCC--CHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHhcCc-------ccEEEE--ecchh
Confidence            467777766532233443  6889999999998864  344 444334454555555322       367888  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh-hCC--C-----------------CeeeeeeecCCCCCCCHHHHHH
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DAR--V-----------------PWSEYRYYDPKTVGLDFEGMIA  221 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~G--~-----------------~v~~v~~~~~~~~~~d~e~l~~  221 (459)
                      +|...+.++.+.+...|+|+..+-+|.++...+- .+|  .                 .++.+|+       -|++.+++
T Consensus       120 EAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~y-------ND~~al~~  192 (432)
T COG0001         120 EATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPY-------NDLEALEE  192 (432)
T ss_pred             HHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecC-------CCHHHHHH
Confidence            9999999998888888999999999988765543 222  1                 1222332       28999999


Q ss_pred             HHHcCCCCcEEEE-eCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012647          222 DIKAAPGGSFILL-HGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (459)
Q Consensus       222 ~i~~~~~~~~~ii-~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~  299 (459)
                      ++++.+++...|| -+-+.|- |. ...++-+++|.++|+++|.++|.||+..+|...-  .   ....+..-.+++.  
T Consensus       193 ~~~~~g~~IAaVIvEPv~gn~-g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~--g---Gaq~~~gi~PDlt--  264 (432)
T COG0001         193 AFEEYGDDIAAVIVEPVAGNM-GVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVAL--G---GAQGYYGVEPDLT--  264 (432)
T ss_pred             HHHHcCCcEEEEEeccccCCC-CCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCC--c---ccccccCcCcchh--
Confidence            9998655555555 4444554 55 4556669999999999999999999988776431  0   1112223334443  


Q ss_pred             EcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHH---hCC-hhhHHHHHHHHHHHHHH
Q 012647          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV---VGN-PALFDEWKAEMEMMAGR  375 (459)
Q Consensus       300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---L~~-~~~~~~~~~~~~~~~~~  375 (459)
                       +|.|..| .|+.+|.+.+   .++.++.+...-...+..++ +-+.++..+....   |.. ++.       .+++.+.
T Consensus       265 -tlGKiIG-GGlP~ga~gG---r~eiM~~~~p~g~vyqaGT~-sgnplamaAG~atl~~l~~~~~~-------y~~l~~~  331 (432)
T COG0001         265 -TLGKIIG-GGLPIGAFGG---RAEIMEQLAPLGPVYQAGTL-SGNPLAMAAGLATLEELMTEEGV-------YERLDAL  331 (432)
T ss_pred             -hhhhhhc-CCcceeeecc---HHHHHhhhCCCCCccccCCC-CCcHHHHHHHHHHHHHHHhcccH-------HHHHHHH
Confidence             7899999 9999999755   77744433332223333333 3333333333222   221 111       1233333


Q ss_pred             HHHHHHHHHHHHhhccCCCCCcccccCCcceee--ecC--C---------C----HHHHHHHHhcccEEEcCCC----cE
Q 012647          376 IKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFS--FTG--L---------N----KAQSDNMTNKWHVYMTKDG----RI  434 (459)
Q Consensus       376 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~--~~~--l---------~----~~~~~~ll~~~gI~v~~gg----Ri  434 (459)
                      -.++++-|.+.+. +.|+|  +. +...+++|.  |..  .         +    ..++..++++ ||++.|..    -+
T Consensus       332 ~~~L~~gl~~~~~-~~g~~--~~-v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~-GV~l~ps~~ea~fl  406 (432)
T COG0001         332 GERLAEGLRAAAE-RHGIP--LT-VNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNR-GVYLAPSQFEAGFL  406 (432)
T ss_pred             HHHHHHHHHHHHH-HhCCC--eE-EeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhC-CcccCCccccceee
Confidence            3333444444444 55542  22 233455552  222  1         1    1345577775 99999984    66


Q ss_pred             EEccCChhhHHHHHHHHHHHHhhc
Q 012647          435 SLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       435 s~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      |.+. ++++|++.++++.++++++
T Consensus       407 S~ah-te~di~~~~~a~~~~~~~~  429 (432)
T COG0001         407 STAH-TEEDIDRTLEAADEAFKEL  429 (432)
T ss_pred             eccc-CHHHHHHHHHHHHHHHHHh
Confidence            7777 9999999999999998875

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.76  E-value=9.5e-16  Score=153.44  Aligned_cols=324  Identities=15%  Similarity=0.143  Sum_probs=185.8

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC------CCcccHHHHH----HHHHHHhcCCCCccccCce
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL------PIEGLAAFNK----VTAELLFGADNSVLKEQRV  152 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~------~~~g~~~lr~----aia~~l~~~~~~~~~~~~i  152 (459)
                      ...++|-..+.       +++|.+++++...+......+|+      -.....+|.+    .+++++...       .-+
T Consensus        28 ~~~~~l~~sen-------~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~-------~al   93 (416)
T PRK13034         28 QDHLELIASEN-------FTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCD-------YAN   93 (416)
T ss_pred             hcCeeeccccc-------CCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCC-------ceE
Confidence            46677776553       24899999988875221111111      1234566776    888886432       222


Q ss_pred             EEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcch-HHHhhh--CCCCe--eeeeeecCCCCCCCHHHHHHHHHcCC
Q 012647          153 ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH-KNIFND--ARVPW--SEYRYYDPKTVGLDFEGMIADIKAAP  227 (459)
Q Consensus       153 ~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~-~~~~~~--~G~~v--~~v~~~~~~~~~~d~e~l~~~i~~~~  227 (459)
                      +.  +++|+.|+..+  +.+.+.|||+|+++..+|... ..-++.  .+...  ..++++ ..++.+|++++++.++.. 
T Consensus        94 v~--~~SG~~A~~~~--l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~d~~~le~~l~~~-  167 (416)
T PRK13034         94 VQ--PHSGSQANGAV--YLALLKPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVD-RLTGLIDYDEVEELAKEH-  167 (416)
T ss_pred             Ee--cCCcHHHHHHH--HHHhcCCCCEEEEcCccceeeeecCCcceeccceeeeEEcccc-cccCCcCHHHHHHHHhhc-
Confidence            33  57899999988  555578999999999988762 111111  12111  233332 335679999999988652 


Q ss_pred             CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc
Q 012647          228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (459)
Q Consensus       228 ~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (459)
                       ++++|++..+.  +|..   .++.+|.++|++||+++++|+++.-..... ..   .   .......+++++|++|.++
T Consensus       168 -~~klVi~~~~~--~g~~---~dl~~l~~la~~~g~~livD~Aha~G~~~~-g~---~---~~~~~~~Di~~~s~~K~l~  234 (416)
T PRK13034        168 -KPKLIIAGFSA--YPRE---LDFARFREIADEVGALLMVDMAHIAGLVAA-GE---H---PNPFPHAHVVTTTTHKTLR  234 (416)
T ss_pred             -CCeEEEECCCc--cccc---cCHHHHHHHHHHcCCEEEEeCcccccCccc-CC---C---CCCCCCceEEEEeCcccCC
Confidence             46677764444  4555   578888999999999999999943322211 00   0   0011235688999999994


Q ss_pred             cCCCCcceEEEEeCChhHHHHHHHHHHhhcccc-ccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          308 LYAERIGAMNVVCSSSDLAARVKSQLKRLARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDS  386 (459)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  386 (459)
                      .+.  -|+++  +.+++..++    +....... ..++......++...+.  ...   .....+.++++.++.++|.+.
T Consensus       235 g~~--GG~v~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~aa~~~al~--~~~---~~~~~~~~~~l~~~a~~l~~~  301 (416)
T PRK13034        235 GPR--GGMIL--TNDEEIAKK----INSAVFPGLQGGPLMHVIAAKAVAFG--EAL---QPEFKTYAKQVIANAQALAEV  301 (416)
T ss_pred             CCC--CeEEE--ECcHHHHHH----HHhhcCCcccCCccHHHHHHHHHHHH--HHh---ChhHHHHHHHHHHHHHHHHHH
Confidence            232  25542  334442222    22211111 11121211111111111  000   011235578888899999999


Q ss_pred             HhhccCCCCCccccc--CCccee-eecC---CCHHHHHHHHhcccEEEcC----------C---C-cEEEcc-----CCh
Q 012647          387 LSAKDKSGKDWSFIL--RQIGMF-SFTG---LNKAQSDNMTNKWHVYMTK----------D---G-RISLAG-----LSL  441 (459)
Q Consensus       387 L~~~~g~~~~~~~~~--~~~g~f-~~~~---l~~~~~~~ll~~~gI~v~~----------g---g-Ris~~~-----~~~  441 (459)
                      |+ +.|    +++..  ++.... +.++   .+...+.+.++++||.+.+          .   + |++...     .++
T Consensus       302 L~-~~G----~~~~~~~~~t~i~~v~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~  376 (416)
T PRK13034        302 LK-ERG----YDLVSGGTDNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGE  376 (416)
T ss_pred             HH-HcC----CEeccCCCCCcEEEEEcCCCCCCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCH
Confidence            98 877    44432  222222 2223   2556665566667998864          1   2 877432     368


Q ss_pred             hhHHHHHHHHHHHHhh
Q 012647          442 AKCEYLADAIIDSYHN  457 (459)
Q Consensus       442 e~i~~~~~~l~~~~~~  457 (459)
                      +++++++++|++++.+
T Consensus       377 ~di~~l~~~l~~~~~~  392 (416)
T PRK13034        377 AEFREIANWILDVLDD  392 (416)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999988864

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.76  E-value=1.2e-15  Score=151.54  Aligned_cols=337  Identities=11%  Similarity=0.005  Sum_probs=197.4

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...+||..|..-+.-+..  .|.|.+++.+.+++.. +.+  .....+....+++++....+    .+.+++  +++|+
T Consensus        35 G~~~lD~~sg~~~~~lGh~--~p~v~~a~~~q~~~~~-~~~--~~~~~~~~~~la~~l~~~~~----~~~v~f--~~SGs  103 (395)
T PRK03715         35 GKRYLDFIQGWAVNCLGHC--NPGMVEALAAQAEKLI-NPS--PAFYNEPMAKLAGLLTQHSC----FDKVFF--ANSGA  103 (395)
T ss_pred             CCEEEECCcChhhccCCCC--CHHHHHHHHHHHHhcc-ccc--ccccCHHHHHHHHHHhhccC----CCEEEE--eCCcH
Confidence            4578999887543344554  6889999888775422 212  12234566778888754321    357888  99999


Q ss_pred             hHHHHHHHHHHHhC----CC-CEEEEcCCCCcchHH-HhhhCCCCee---eeeeecC--CCCCCCHHHHHHHHHcCCCCc
Q 012647          162 GSLRLAAALIERYF----PG-AKVLISSPTWGNHKN-IFNDARVPWS---EYRYYDP--KTVGLDFEGMIADIKAAPGGS  230 (459)
Q Consensus       162 ~a~~l~~~~~~~~~----~g-d~Vlv~~p~y~~~~~-~~~~~G~~v~---~v~~~~~--~~~~~d~e~l~~~i~~~~~~~  230 (459)
                      +|++.+.++...+.    +| .+|+..+.+|.+..- .+...|....   ..|....  .....|++.+++.+.+   .+
T Consensus       104 eA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~---~~  180 (395)
T PRK03715        104 EANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITD---KT  180 (395)
T ss_pred             HHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcCC---Cc
Confidence            99999988876542    23 678888988876532 3333332211   1111000  0002478899888864   56


Q ss_pred             EEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccC
Q 012647          231 FILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (459)
Q Consensus       231 ~~ii~~~p~NPTG~~~-s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  309 (459)
                      .++++...++..|... +++.+++|.++|++||+++|+||++.+++-.+   ..+.... .+..+++   .+|+|.++ .
T Consensus       181 aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG---~~~a~~~-~gv~PDi---~t~gK~lg-~  252 (395)
T PRK03715        181 VAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTG---TLFAYEL-SGIEPDI---MTLGKGIG-G  252 (395)
T ss_pred             eEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCc---chhhHhh-cCCCCce---eeehhhhh-C
Confidence            6777777777778764 68889999999999999999999998875322   1222222 2223343   37899999 6


Q ss_pred             CCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012647          310 AERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA  389 (459)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  389 (459)
                      |+.+|.+.+   +++.    ..........++. .+.++..++...|+   ..   ++  +...++.+++.+++.+.|+ 
T Consensus       253 G~p~~av~~---~~~i----~~~~~~~~~~T~~-g~pl~~aaala~L~---~l---~~--~~l~~~~~~~g~~l~~~L~-  315 (395)
T PRK03715        253 GVPLAALLA---KAEV----AVFEAGDQGGTYN-GNPLMTAVGVAVIS---QL---LA--PGFLEGVRARGEYLKEKLL-  315 (395)
T ss_pred             CcceEEEEE---cccc----ccccCCCcCCCCC-CCHHHHHHHHHHHH---HH---Hh--ccHHHHHHHHHHHHHHHHH-
Confidence            888999865   5553    2111111223332 23333333333321   10   00  2345566666666666666 


Q ss_pred             ccCCCCCcccccCCcceeeecCC--C-HHHHHHHHhcc---cEEEcCCC----cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          390 KDKSGKDWSFILRQIGMFSFTGL--N-KAQSDNMTNKW---HVYMTKDG----RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       390 ~~g~~~~~~~~~~~~g~f~~~~l--~-~~~~~~ll~~~---gI~v~~gg----Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                      ++....++..+...| .++-+.+  + ...+...+.+.   ||.+.+.+    ||+... .+++++++++++|.++++++
T Consensus       316 ~l~~~~~i~~vrG~G-lm~~i~l~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~lR~~p~l~~t~~ei~~~~~~l~~~l~~~  394 (395)
T PRK03715        316 ELSEERGLEGERGEG-LLRALLLGKDIGPQIVEKARDMQPDGLLLNAPRPNLLRFMPALNVTTEEIDQMIAMLRSVLDKL  394 (395)
T ss_pred             HHhhcCCcCeEEcce-eEEEEEecCchHHHHHHHHHhccCCCEEEeecCCCEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence            541111122233333 3322222  1 12233223334   99986443    777553 39999999999999999876

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.76  E-value=1.7e-16  Score=155.94  Aligned_cols=310  Identities=15%  Similarity=0.054  Sum_probs=185.7

Q ss_pred             CCccCcHHHHHHHHHHhhcC---CCCCCCCC-------cccHHHHHHHHHHHhcCCCCccccCceEEeeccc-chhHHHH
Q 012647           98 LQPYVLDVVKKAENLMLERG---ENKEYLPI-------EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS-GTGSLRL  166 (459)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~---~~~~Y~~~-------~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g-gt~a~~l  166 (459)
                      ++..+|+.|.+++.+.+...   ....|...       .-+.+.|+.++++++...     +++|++  |.| +|++++.
T Consensus         6 Gp~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~-----~~~vvf--~~gs~T~a~~~   78 (355)
T cd00611           6 GPAALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPD-----NYKVLF--LQGGATGQFAA   78 (355)
T ss_pred             CCCCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCC-----CceEEE--EcCCchHHHHH
Confidence            34456899999999877320   00111111       336788999999986421     577888  888 9999999


Q ss_pred             HHHHHHHhC---CCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCC-HHHHHHHHHcCCCCcEEEEeCCCCCCC
Q 012647          167 AAALIERYF---PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD-FEGMIADIKAAPGGSFILLHGCAHNPT  242 (459)
Q Consensus       167 ~~~~~~~~~---~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d-~e~l~~~i~~~~~~~~~ii~~~p~NPT  242 (459)
                      +  +...+.   +||.|++ .|....+..+++..|++++.++.+++..+ .+ ++..+..++   ++++++.+++..|.|
T Consensus        79 ~--~~~l~~~~~~~~~i~~-g~~~~~~~~~a~~~g~~~~~~~~~~~g~~-~~~~~~~~~~~~---~~~~lV~~~h~~t~t  151 (355)
T cd00611          79 V--PLNLLGDKGTADYVVT-GAWSAKAAKEAKRYGGVVVIVAAKEEGKY-TKIPDVETWDLA---PDAAYVHYCSNETIH  151 (355)
T ss_pred             H--HHhcCCCCCeEEEEEC-CHHHHHHHHHHHhcCCCcEEEecccccCC-CCCCCHhhcCCC---CCCCEEEEeCCcccc
Confidence            8  344455   4555443 22222334477888999999987422111 13 222223333   367888889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCC
Q 012647          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (459)
Q Consensus       243 G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (459)
                      |..++        ++++.||+++++|.+ |.++..+.+.         +..+  +.+.|..|.||++|  +|++++   +
T Consensus       152 G~~~~--------~i~~~~g~~~~VDa~-qs~g~~~idv---------~~~~--~~~ss~~K~lGP~G--~g~l~~---~  206 (355)
T cd00611         152 GVEFD--------EVPDTGGVPLVADMS-SNILSRPIDV---------SKFG--VIYAGAQKNLGPAG--VTVVIV---R  206 (355)
T ss_pred             cEEcc--------eecccCCCeEEEEcc-ccccCCCCCH---------HHhC--EEEeecccccCCCc--eEEEEE---C
Confidence            99732        344569999999999 7777543321         1222  34466899999988  788877   7


Q ss_pred             hhHHHHHHHHH------Hh-hccc-cccCCchHHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcc-C
Q 012647          323 SDLAARVKSQL------KR-LARP-MYSNPPVHGARIVANVVGNPALFDEWKA-EMEMMAGRIKNVRQKLFDSLSAKD-K  392 (459)
Q Consensus       323 ~~~~~~~~~~~------~~-~~~~-~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~-g  392 (459)
                      ++..+++....      .. .... ...+++..+..+....|+   +..  .+ .++.+.++++++.+++++.|+ ++ |
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~---~l~--~~gg~e~i~~~~~~l~~~l~~~l~-~~~g  280 (355)
T cd00611         207 KDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLK---WLK--EQGGVEAMEKRNRQKAQLLYDTID-NSNG  280 (355)
T ss_pred             HHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHH---HHH--HcCCHHHHHHHHHHHHHHHHHHHH-hCcc
Confidence            77554433210      00 0111 122344333333333321   111  12 368889999999999999999 88 5


Q ss_pred             CCCCccccc--CCc-ceeeec--CC--CHHHHHHHHhcccEEEcCC----C--cEEEccC-ChhhHHHHHHHHHHHH
Q 012647          393 SGKDWSFIL--RQI-GMFSFT--GL--NKAQSDNMTNKWHVYMTKD----G--RISLAGL-SLAKCEYLADAIIDSY  455 (459)
Q Consensus       393 ~~~~~~~~~--~~~-g~f~~~--~l--~~~~~~~ll~~~gI~v~~g----g--Ris~~~~-~~e~i~~~~~~l~~~~  455 (459)
                      +-.  ....  ... ..+.|.  +.  +.++...+.+ .|+.+.++    |  |+|+... ++|||++++++|+++.
T Consensus       281 l~~--~~~~~~~rs~~vvsf~~~~~~l~~~~~~~~~r-~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~~  354 (355)
T cd00611         281 FYR--GPVDKRARSRMNVPFRLGKEELEKEFLKEAEA-AGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEFQ  354 (355)
T ss_pred             ccc--cCCCHHHcCceEEEEEcCChhhhHHHHHHHHH-CCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHHHh
Confidence            310  1111  122 223332  32  2333344444 69975544    3  9998776 8899999999998853

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.76  E-value=6e-16  Score=151.55  Aligned_cols=340  Identities=14%  Similarity=0.102  Sum_probs=207.9

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...|||..|...-.-++.  +|.|.+++++.++.-  ....|.+.+..-++-+.+.+.+-+.     ..+.+++  +++
T Consensus        55 G~~ylDf~sgi~v~~~GH~--hP~Vv~Av~~q~~~~~h~~~~~~~~e~~v~~ae~L~~~~p~~-----~~~~~~f--~~s  125 (447)
T COG0160          55 GNEYLDFLSGIAVLNLGHN--HPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAPGS-----GLKKVFF--GNS  125 (447)
T ss_pred             CCEEEEcccCcchhccCCC--CHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHhCCcc-----cCCeEEe--cCC
Confidence            4578899987653344543  799999998877542  2244444344445555555554332     1467888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh-h-------------hCCCCeeeeeeecCC--CCCC--------C
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-N-------------DARVPWSEYRYYDPK--TVGL--------D  215 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~-~-------------~~G~~v~~v~~~~~~--~~~~--------d  215 (459)
                      |++|++++.++......+..||...-.|.+..... .             .....+..+|+...-  .+..        .
T Consensus       126 GaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~  205 (447)
T COG0160         126 GAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDA  205 (447)
T ss_pred             cHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHH
Confidence            99999999999877777789999998886432221 1             111235666653211  1111        2


Q ss_pred             HHHHHHHHHc---CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh
Q 012647          216 FEGMIADIKA---APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT  291 (459)
Q Consensus       216 ~e~l~~~i~~---~~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~  291 (459)
                      .+.++..+..   .+.....+|+-..+...|.+ .+++-++++.++|++||+++|+||+..+++-.   ...|++..+ +
T Consensus       206 ~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRT---G~~fa~E~~-g  281 (447)
T COG0160         206 LEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRT---GKMFAFEHF-G  281 (447)
T ss_pred             HHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcc---ccchhhhhc-C
Confidence            3334443333   23456777778888888865 55666999999999999999999998888754   245554333 2


Q ss_pred             cCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012647          292 RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEM  371 (459)
Q Consensus       292 ~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~  371 (459)
                      -.++++   +++|.+| .|+.+|.++.   .++    +.+.......+++ .-+.++..++...|+-  +   |+   +.
T Consensus       282 v~PDiv---t~aK~ig-~G~Pl~avv~---r~e----i~~~~~g~~~~Tf-~GNpva~Aaa~AvL~v--i---e~---e~  341 (447)
T COG0160         282 VEPDIV---TLAKSLG-GGLPLSAVVG---RAE----IMDWPPGGHGGTF-GGNPVACAAALAVLDV--I---EE---EN  341 (447)
T ss_pred             CCCCEE---Eeccccc-CCCceeEEec---cHH----hcccCCcccCCCC-CcCHHHHHHHHHHHHH--H---HH---cc
Confidence            345555   7899999 5999999866   777    4442222222333 3344444444443321  1   11   24


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCcccccCC--cceeeecCC---------C----HHHHHHHHhcccEEEcCCC----
Q 012647          372 MAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ--IGMFSFTGL---------N----KAQSDNMTNKWHVYMTKDG----  432 (459)
Q Consensus       372 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~--~g~f~~~~l---------~----~~~~~~ll~~~gI~v~~gg----  432 (459)
                      ..++.++.-++|.+.|. ++.-  .+..+..-  -|+++-+.+         +    ...+.++++ .|+.+..+|    
T Consensus       342 L~~~a~~~G~~l~~~L~-~l~~--~~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~-~Glil~~~G~~~n  417 (447)
T COG0160         342 LLERAAELGEYLRDRLE-ELQE--KHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFE-RGLLLLTCGPHGN  417 (447)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHh--hcCceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHH-cCCEEeccCCCCc
Confidence            45555556666666665 4421  01222221  234433211         2    233556666 599888876    


Q ss_pred             --cEEEc-cCChhhHHHHHHHHHHHHhhc
Q 012647          433 --RISLA-GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       433 --Ris~~-~~~~e~i~~~~~~l~~~~~~~  458 (459)
                        ||... .+++|+++.+++.|.++++++
T Consensus       418 viRi~PPL~is~e~~d~~l~il~~al~~~  446 (447)
T COG0160         418 VLRILPPLTISDEELDEGLDILEEALKEA  446 (447)
T ss_pred             EEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence              77643 238999999999999999865

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.75  E-value=1.6e-15  Score=152.82  Aligned_cols=340  Identities=13%  Similarity=0.082  Sum_probs=192.8

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCC--CCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK--EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~--~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...+|+..|..-..-++.  +|.|.+++.+.++.....  .+.+.....+|.+.+++......     .+.|.+  +++
T Consensus        41 G~~ylD~~~g~~~~~lGH~--~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-----~~~v~f--~~S  111 (445)
T PRK08593         41 GKTYIDLLASASSQNVGHA--PPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCELAPGDF-----EKRVTF--GLS  111 (445)
T ss_pred             CCEEEECCccHHhhcCCCC--CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCC-----CCEEEE--CCc
Confidence            3567888777542233443  789999998888653111  11233334455555655532110     257888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH-hhhCC-------------CCeeeeeeecCCC--CC-CC-------
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI-FNDAR-------------VPWSEYRYYDPKT--VG-LD-------  215 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~-~~~~G-------------~~v~~v~~~~~~~--~~-~d-------  215 (459)
                      |++|++.+.++.+.+....+|+..+-+|.+.... +...+             ..++.+|..+...  +. .+       
T Consensus       112 GseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  191 (445)
T PRK08593        112 GSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEY  191 (445)
T ss_pred             hHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHH
Confidence            9999999988876665556788888888765322 21111             1123344311100  00 11       


Q ss_pred             HHHHHHHHHcC--CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc
Q 012647          216 FEGMIADIKAA--PGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR  292 (459)
Q Consensus       216 ~e~l~~~i~~~--~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~  292 (459)
                      ++.+++.+...  ++....+|+...+...|.+ ++++.+++|.++|++||+++|+||++.+++..+   ..+....+ ..
T Consensus       192 ~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG---~~~a~~~~-gv  267 (445)
T PRK08593        192 LAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTG---KWSSISHF-NI  267 (445)
T ss_pred             HHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc---hHHHHHhc-CC
Confidence            23444444321  2356777777778888886 788889999999999999999999998886432   12222222 22


Q ss_pred             CCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHH
Q 012647          293 GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMM  372 (459)
Q Consensus       293 ~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~  372 (459)
                      .++++   +++|.++ .|+++|++++   +++..+.+..   .....++ +.+.+++.++...|+-   .   ++  +..
T Consensus       268 ~pDi~---t~gK~l~-~G~p~gav~~---~~~i~~~~~~---~~~~~T~-~~~pl~~aaa~a~l~~---l---~~--~~l  328 (445)
T PRK08593        268 TPDLM---SFGKSLA-GGMPMSAIVG---RKEIMESLEA---PAHLFTT-GANPVSCAAALATIDM---I---ED--ESL  328 (445)
T ss_pred             CCCEe---eeccccc-CCcccEEEEE---cHHHHhhhcc---CCCCCCC-CCCHHHHHHHHHHHHH---H---Hh--ccH
Confidence            33433   7899998 7899999866   7774443321   1111222 3344444444333321   0   00  123


Q ss_pred             HHHHHHHHHHHHHHHhhcc----CCCCCcccccCCcceeee--cC-----C-C----HHHHHHHHhcccEEEcCC-C---
Q 012647          373 AGRIKNVRQKLFDSLSAKD----KSGKDWSFILRQIGMFSF--TG-----L-N----KAQSDNMTNKWHVYMTKD-G---  432 (459)
Q Consensus       373 ~~~~~~~~~~l~~~L~~~~----g~~~~~~~~~~~~g~f~~--~~-----l-~----~~~~~~ll~~~gI~v~~g-g---  432 (459)
                      .++.+++-++|.+.|+ ++    +.   +..+.-.|.++.+  ..     . +    ..+...+++ +||.+.+. +   
T Consensus       329 ~~~~~~~g~~l~~~L~-~l~~~~~~---v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~-~Gv~~~~~~~~~l  403 (445)
T PRK08593        329 LQRSAEKGEYARKRFD-QWVSKYNF---VGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFE-HGVVIIAVAGNVL  403 (445)
T ss_pred             HHHHHHHHHHHHHHHH-HHHhcCCc---EEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHH-CCeEEeccCCCEE
Confidence            3444445555555554 33    21   1112222222211  11     0 1    133455655 69999763 3   


Q ss_pred             cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          433 RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       433 Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                      |++.+. .++++++++++++.++++++
T Consensus       404 r~~p~l~~t~~~id~~~~~l~~~l~~~  430 (445)
T PRK08593        404 RFQPPLVITYEQLDTALNTIEQAFTAL  430 (445)
T ss_pred             EEECCCccCHHHHHHHHHHHHHHHHHH
Confidence            666543 29999999999999998764

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.75  E-value=1.8e-15  Score=152.58  Aligned_cols=339  Identities=12%  Similarity=0.026  Sum_probs=192.1

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CC-CCCCCcccHHHHHHHHHHHhcCCCCccccCc-eEEeecc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NK-EYLPIEGLAAFNKVTAELLFGADNSVLKEQR-VATVQGL  158 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~-~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~-i~~~~t~  158 (459)
                      +...+|+..|..-..-++.  +|.|.+++.+.++... .+ .+.+.....+|-+.+++......    .... +++  ++
T Consensus        38 G~~ylD~~~g~~~~~lGh~--~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~----~~~~~~f~--~~  109 (442)
T TIGR00709        38 GKEYLDFLAGAGTLALGHN--HPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLNIIPKRK----MDYKLQFP--GP  109 (442)
T ss_pred             CCEEEEccccHhhhcCCCC--CHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCcC----CCccEEEe--CC
Confidence            4578899888653333443  7889999988876522 11 12233333344444544421100    0123 444  68


Q ss_pred             cchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhh-CC------------CCeeeeeeecCCCCCC--------CH-
Q 012647          159 SGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-AR------------VPWSEYRYYDPKTVGL--------DF-  216 (459)
Q Consensus       159 ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~G------------~~v~~v~~~~~~~~~~--------d~-  216 (459)
                      +|++|++.+.++...+....+|+....+|.+....... .|            ..+..+|..  +....        +. 
T Consensus       110 sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  187 (442)
T TIGR00709       110 SGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYP--HEYRCPFGIGGEAGSN  187 (442)
T ss_pred             CHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCC--ccccccccCCchhHHH
Confidence            99999999998887765557899999988776433332 11            112333331  11111        11 


Q ss_pred             ---HHHHHHHHc---C-CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH
Q 012647          217 ---EGMIADIKA---A-PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF  289 (459)
Q Consensus       217 ---e~l~~~i~~---~-~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~  289 (459)
                         +.+++.+..   . .+.+.+++-+.++|+....++++.+++|.++|++||+++|.||+|.+++..+   ..+....+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~~a~~~~  264 (442)
T TIGR00709       188 ASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSG---TMFAFEHA  264 (442)
T ss_pred             HHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCC---chhHHHHc
Confidence               123333321   1 1234445545455555556899999999999999999999999999997542   23343332


Q ss_pred             HhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012647          290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEM  369 (459)
Q Consensus       290 ~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~  369 (459)
                       +..+++++   ++|.++. |+++|++++   +++ .+.+.   ...... +.+.+.+++.++...|+.  +.    +  
T Consensus       265 -gv~PDiv~---~gK~l~~-G~Pigav~~---~~~-~~~~~---~~~~~~-T~~gnpla~aaa~a~L~~--i~----~--  323 (442)
T TIGR00709       265 -GIEPDFVV---MSKAVGG-GLPLAVLLI---APE-FDAWQ---PAGHTG-TFRGNQLAMVTGTEALNY--WK----D--  323 (442)
T ss_pred             -CCCCcEEE---EcccccC-CcccEEEEE---chH-HhccC---CCcCCC-CCCcCHHHHHHHHHHHHH--HH----h--
Confidence             33345443   8999995 999999965   555 33321   111222 335566666666555531  11    0  


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcc--CCCCCcccccCCcceeee--cCC------------C----HHHHHHHHhcccEEEc
Q 012647          370 EMMAGRIKNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSF--TGL------------N----KAQSDNMTNKWHVYMT  429 (459)
Q Consensus       370 ~~~~~~~~~~~~~l~~~L~~~~--g~~~~~~~~~~~~g~f~~--~~l------------~----~~~~~~ll~~~gI~v~  429 (459)
                      +...++.+++.++|.+.|+ ++  ..|. +..+...|.++..  ..-            +    ..+...+++ +||.+.
T Consensus       324 ~~l~~~~~~~g~~l~~~L~-~l~~~~~~-v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~  400 (442)
T TIGR00709       324 DNLAQNAQERGERITSFLD-DMIKEHPC-IGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFE-NGLLLE  400 (442)
T ss_pred             cCHHHHHHHHHHHHHHHHH-HHHHhCCC-eeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHH-CCeEEe
Confidence            2344566666677777666 43  1110 1122233333321  110            0    112334445 699987


Q ss_pred             CC---C---cEEEcc-CChhhHHHHHHHHHHHHhh
Q 012647          430 KD---G---RISLAG-LSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       430 ~g---g---Ris~~~-~~~e~i~~~~~~l~~~~~~  457 (459)
                      +.   |   |+..+- .++++++++++++.+++.+
T Consensus       401 ~~~~~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~  435 (442)
T TIGR00709       401 TGGREGEVFRLLCPITIDQEECEEGISRFKQAVEE  435 (442)
T ss_pred             ecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            65   3   665442 3999999999999998865

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.75  E-value=1.2e-15  Score=152.77  Aligned_cols=156  Identities=17%  Similarity=0.113  Sum_probs=120.6

Q ss_pred             ccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcch----HHHhhhCCCCee
Q 012647          127 GLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH----KNIFNDARVPWS  202 (459)
Q Consensus       127 g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~----~~~~~~~G~~v~  202 (459)
                      -..+|++.+|++...        +..++  +++|++|+.++  +...+.+||+|+++.++|...    ...+...|++++
T Consensus        64 ~~~~le~~lA~l~g~--------~~al~--~~SG~~Ai~~a--l~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~  131 (427)
T PRK05994         64 TNAVLEERVAALEGG--------TAALA--VASGHAAQFLV--FHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVR  131 (427)
T ss_pred             cHHHHHHHHHHHhCC--------CcEEE--EcCHHHHHHHH--HHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEE
Confidence            457889999998643        23455  79999999988  444578999999999999853    344667899988


Q ss_pred             eeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCC
Q 012647          203 EYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDND  282 (459)
Q Consensus       203 ~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~  282 (459)
                      .++.       .|++.+++++++   +++++++++|+||||.++   ++++|+++|+++|+++|+|++|......    .
T Consensus       132 ~vd~-------~d~~~l~~ai~~---~tklV~vesp~NptG~v~---dl~~I~~la~~~gi~livD~a~a~~~~~----~  194 (427)
T PRK05994        132 WADA-------DDPASFERAITP---RTKAIFIESIANPGGTVT---DIAAIAEVAHRAGLPLIVDNTLASPYLI----R  194 (427)
T ss_pred             EECC-------CCHHHHHHhcCc---CCeEEEEECCCCCCCeec---CHHHHHHHHHHcCCEEEEECCccccccC----C
Confidence            8865       278999998875   788899999999999995   5788999999999999999997532211    0


Q ss_pred             hhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012647          283 ASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (459)
Q Consensus       283 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (459)
                        .+     ...-++++.|++|.+|.+|-.+|.+++
T Consensus       195 --pl-----~~gaDivv~S~tK~lgg~~~~~gG~v~  223 (427)
T PRK05994        195 --PI-----EHGADIVVHSLTKFLGGHGNSMGGIIV  223 (427)
T ss_pred             --cc-----ccCCcEEEEcCccccCCCCCcEEEEEE
Confidence              11     123468899999999978877887754

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.75  E-value=3.4e-15  Score=146.20  Aligned_cols=316  Identities=13%  Similarity=0.093  Sum_probs=197.5

Q ss_pred             HHHHHH-HHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEE
Q 012647          104 DVVKKA-ENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLI  182 (459)
Q Consensus       104 ~~v~~a-~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv  182 (459)
                      +.+.++ +..+.. +. ..|.....+.+|.+++++++..        +++++  |++||.|++++  ....+.|||.|  
T Consensus        50 ~aMs~~q~a~~~~-GD-e~yag~~s~~~lE~~va~~~G~--------~~av~--v~sGT~Al~ll--~~l~l~pGDeV--  113 (450)
T TIGR02618        50 NAMSDKQWAGLMM-GD-EAYAGSRNFYHLERTVRELYGF--------KYVVP--THQGRGAENLL--SQIAIKPGDYV--  113 (450)
T ss_pred             HHHHHHHHHHhhh-cc-hhhcCCCcHHHHHHHHHHHHCC--------CeEEE--cCCHHHHHHHH--HHhCCCCcCEE--
Confidence            555555 444442 22 3588888889999999999743        56888  99999999986  33346799977  


Q ss_pred             cCCCCc-chHHHhhhCCCCeeeeeee--------cCCCCCCCHHHHHHHHHcCC-CCcEEEEeCCCCC-CCCCCCCHHHH
Q 012647          183 SSPTWG-NHKNIFNDARVPWSEYRYY--------DPKTVGLDFEGMIADIKAAP-GGSFILLHGCAHN-PTGIDPTPEQW  251 (459)
Q Consensus       183 ~~p~y~-~~~~~~~~~G~~v~~v~~~--------~~~~~~~d~e~l~~~i~~~~-~~~~~ii~~~p~N-PTG~~~s~~~l  251 (459)
                      +.++|. .+...++..|+.++.++.+        .+.++.+|++.++++|++.. +++.++.+.+++| ..|..+|.+++
T Consensus       114 psn~~f~Tt~ahIe~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l  193 (450)
T TIGR02618       114 PGNMYFTTTRYHQEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANM  193 (450)
T ss_pred             CCceeHHHHHHHHHhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHH
Confidence            667774 4444478889876666443        13467899999999998632 2333455555677 55899999999


Q ss_pred             HHHHHHHHhcCCeeEEeccCCC-CCCC------C-CCCChhHH-HHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCC
Q 012647          252 EKIADVIQEKNHIPFFDVAYQG-FASG------S-LDNDASSV-RLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (459)
Q Consensus       252 ~~i~~l~~~~~~~ii~Deay~~-~~~~------~-~~~~~~~~-~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (459)
                      ++|.++|++||+.+|.|.+... -++-      + .+.+.+-+ +.+...  -+.+..|..|..+.+   +|.+++ .++
T Consensus       194 ~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~--aD~~~~S~~Kd~~~~---~GG~l~-~~d  267 (450)
T TIGR02618       194 REVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSY--ADGCTMSGKKDCLVN---IGGFLC-MND  267 (450)
T ss_pred             HHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhcc--CcEEEEeeccCCCCC---CceEEE-eCC
Confidence            9999999999999999999432 1110      0 01111111 222222  234778999997755   566643 578


Q ss_pred             hhHHHHHHHHHHhhccccccCCchHHH---HHHHHHhCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccCCCCCcc
Q 012647          323 SDLAARVKSQLKRLARPMYSNPPVHGA---RIVANVVGNPALFDEWKAEME-MMAGRIKNVRQKLFDSLSAKDKSGKDWS  398 (459)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~L~~~~g~~~~~~  398 (459)
                      +++.+++....... .++. ....++.   .+.+..|.         +.++ ...++-....++|.+.|. +.|    +.
T Consensus       268 ~~l~~k~r~~~~~~-eG~~-tyGgla~r~~~ala~gL~---------e~~~~~y~~~r~~~a~~La~~L~-~~G----vp  331 (450)
T TIGR02618       268 DEMFQSAKELVVVF-EGMP-SYGGLAGRDMEAMAIGIR---------EAVDYEYIEHRVKQVRYLGDKLK-AAG----VP  331 (450)
T ss_pred             HHHHHHHHHHhhhc-CCcc-ccCchhhhhHHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHH-HCC----Cc
Confidence            88766665543322 1111 1112121   11122221         1122 222223335778889998 888    46


Q ss_pred             cccCCcceeeecC-------CC------HHHHHHHHhcccEEEcCC-----------C----------cEEEcc--CChh
Q 012647          399 FILRQIGMFSFTG-------LN------KAQSDNMTNKWHVYMTKD-----------G----------RISLAG--LSLA  442 (459)
Q Consensus       399 ~~~~~~g~f~~~~-------l~------~~~~~~ll~~~gI~v~~g-----------g----------Ris~~~--~~~e  442 (459)
                      ++.|.+|.-+|++       +.      ..++..|..+.||--..-           |          |+++.-  +|.+
T Consensus       332 v~~p~ggh~V~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~  411 (450)
T TIGR02618       332 IVEPVGGHAVFLDARRFLPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYA  411 (450)
T ss_pred             ccCCCCcceEEEEhHHhCCCCChhhChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHh
Confidence            6667777666653       21      244556666778743321           1          777652  4889


Q ss_pred             hHHHHHHHHHHHHhh
Q 012647          443 KCEYLADAIIDSYHN  457 (459)
Q Consensus       443 ~i~~~~~~l~~~~~~  457 (459)
                      ++++++++|..+.++
T Consensus       412 h~~~v~~~~~~~~~~  426 (450)
T TIGR02618       412 HMDVVADGIIKLYKH  426 (450)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999998765

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.75  E-value=2e-15  Score=152.30  Aligned_cols=331  Identities=15%  Similarity=0.103  Sum_probs=193.4

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...||+..|......++.  +|.|.+++.+.++..... ..+..-..+|-+.+++.+..       .+.+.+  +++|+
T Consensus        98 G~~yiD~~~g~g~~~lGh~--~p~v~~av~~ql~~~~~~-~~~~~~~~~lAe~l~~~~p~-------~~~v~f--~~SGs  165 (474)
T PLN02482         98 GNEYIDYVGSWGPAIIGHA--DDEVLAALAETMKKGTSF-GAPCLLENVLAEMVIDAVPS-------VEMVRF--VNSGT  165 (474)
T ss_pred             CCEEEEecccccccccCCC--CHHHHHHHHHHHhhCCCC-CCCCHHHHHHHHHHHHhCCC-------CCEEEE--eCChH
Confidence            3467888777532223443  689999999988764322 22332223444444443211       367888  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh-hC-------------CC------CeeeeeeecCCCCCCCHHHHHH
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DA-------------RV------PWSEYRYYDPKTVGLDFEGMIA  221 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~-------------G~------~v~~v~~~~~~~~~~d~e~l~~  221 (459)
                      +|++.+.++.+.+...++|+...-+|.++...+- ..             |.      .+..+|.       -|++.+++
T Consensus       166 EA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------nd~~~l~~  238 (474)
T PLN02482        166 EACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY-------NDLEAVKK  238 (474)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC-------CChHHHHH
Confidence            9999999888777666789999988887642211 10             10      0111111       17888998


Q ss_pred             HHHcCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEE
Q 012647          222 DIKAAPGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (459)
Q Consensus       222 ~i~~~~~~~~~ii~~~p~NPTG~~~-s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  300 (459)
                      .+...++....+|+.....-.|.+. +++.|++|.++|++||+++|+||+..++..+    ..... ...+..++++   
T Consensus       239 ~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGfR~g----~~ga~-~~~gv~PDi~---  310 (474)
T PLN02482        239 LFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIA----YGGAQ-EYFGITPDLT---  310 (474)
T ss_pred             HHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCeecC----cchHh-HHhCCCCCEE---
Confidence            8875444566666666666678665 4788999999999999999999998776432    11121 2223334443   


Q ss_pred             cCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHH---HHhCChhhHHHHHHHHHHHHHHHH
Q 012647          301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVA---NVVGNPALFDEWKAEMEMMAGRIK  377 (459)
Q Consensus       301 S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~L~~~~~~~~~~~~~~~~~~~~~  377 (459)
                      +|+|.+| .|+.+|.+.+   +++.++.+...-......++ +.+.++..++.   ..++++           ...++..
T Consensus       311 t~gK~lg-gG~Pigav~g---~~ei~~~~~~~~~~~~~~T~-~gnpl~~aAala~L~~l~~~-----------~~~~~~~  374 (474)
T PLN02482        311 TLGKVIG-GGLPVGAYGG---RREIMEMVAPAGPMYQAGTL-SGNPLAMTAGIHTLKRLQQP-----------GTYEYLD  374 (474)
T ss_pred             Eecchhh-CCCceEEEEE---cHHHHHhhccCCCcccccCc-chhHHHHHHHHHHHHHHhcc-----------CHHHHHH
Confidence            7899999 8899999865   77744443211001111222 22333333332   233332           2334444


Q ss_pred             HHHHHHHHHHhhccCCCCCcccc-cCCcceeee-c--C-C---------CH----HHHHHHHhcccEEEcCCC----cEE
Q 012647          378 NVRQKLFDSLSAKDKSGKDWSFI-LRQIGMFSF-T--G-L---------NK----AQSDNMTNKWHVYMTKDG----RIS  435 (459)
Q Consensus       378 ~~~~~l~~~L~~~~g~~~~~~~~-~~~~g~f~~-~--~-l---------~~----~~~~~ll~~~gI~v~~gg----Ris  435 (459)
                      ++-++|.+.|+ ++....++.+. ...+|+|.. .  + .         +.    .+...+++ +||++.+.+    -++
T Consensus       375 ~~g~~l~~~L~-~l~~~~g~~~~~~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~-~Gv~~~~~~~~~~~ps  452 (474)
T PLN02482        375 KITKKLIQGIL-EAGKKAGHEMCGGYISGMFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLE-EGVYLAPSQFEAGFTS  452 (474)
T ss_pred             HHHHHHHHHHH-HHHHhcCCCEEEcccceEEEEEEecCCccChhhhccCCHHHHHHHHHHHHH-CCeEEeccCCCCCcCC
Confidence            45555555554 43210001222 222344411 1  1 0         11    23456666 599998864    256


Q ss_pred             EccCChhhHHHHHHHHHHHHhhc
Q 012647          436 LAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       436 ~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      +.. ++++|+++++++.++++++
T Consensus       453 l~h-t~~dId~~l~al~~~l~~~  474 (474)
T PLN02482        453 LAH-TEEDIDFTIAAAERVLARI  474 (474)
T ss_pred             CCC-CHHHHHHHHHHHHHHHHhC
Confidence            555 9999999999999998764

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.75  E-value=5.8e-16  Score=153.73  Aligned_cols=325  Identities=15%  Similarity=0.114  Sum_probs=192.7

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCC------CCCcccHHHHHHHHHHHhcCCCCccccCceEEee
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY------LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y------~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (459)
                      .+.|+|-..++       .+++.+++++...+......+|      .....+.++.....+.....++..  .-+   +|
T Consensus        49 ~~~l~LiasEN-------~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~--~an---vq  116 (493)
T PRK13580         49 RSSLKLIASEN-------YSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAE--HAY---VQ  116 (493)
T ss_pred             hcCceEecccc-------cCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCC--ccc---cc
Confidence            46788887765       2378899988877644322222      223344444433333333333321  123   34


Q ss_pred             cccchhHHHHHHHHHHHhCC-------------------------------CCEEEEcCCCCcchHHH-----hhhCCCC
Q 012647          157 GLSGTGSLRLAAALIERYFP-------------------------------GAKVLISSPTWGNHKNI-----FNDARVP  200 (459)
Q Consensus       157 t~ggt~a~~l~~~~~~~~~~-------------------------------gd~Vlv~~p~y~~~~~~-----~~~~G~~  200 (459)
                      ..+|+.|+..+  +.+.+.|                               ||+|+..++..++|...     +.....+
T Consensus       117 p~Sg~~An~~v--~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~  194 (493)
T PRK13580        117 PHSGADANLVA--FWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFH  194 (493)
T ss_pred             CCCcHHHHHHH--HHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheee
Confidence            58888888887  4555655                               89999998776555221     1122256


Q ss_pred             eeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCC
Q 012647          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (459)
Q Consensus       201 v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~  280 (459)
                      ++.++++ ++++.+|++++++.+++   .+..++++..+|=.+ .   .++++|.++|+++|+++++|+++..-..+.  
T Consensus       195 ~~~y~vd-~~~g~iD~d~l~~~~~~---~~plvii~g~S~~~~-~---~dl~~i~eia~~~gA~L~VD~AH~~Gligg--  264 (493)
T PRK13580        195 QRSYGVD-PDTGLLDYDEIAALARE---FKPLILVAGYSAYPR-R---VNFAKLREIADEVGAVLMVDMAHFAGLVAG--  264 (493)
T ss_pred             eEecccC-cccCccCHHHHHHHHhh---cCCEEEEeCccccCC-C---cCHHHHHHHHHHcCCEEEEECchhhceecc--
Confidence            6677774 44678999999999987   444555566666644 5   468889999999999999999954322221  


Q ss_pred             CChhHHHHHHhcCCeEEEEEcCCcCc-ccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCC--chHHHHHHH-HHh
Q 012647          281 NDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNP--PVHGARIVA-NVV  356 (459)
Q Consensus       281 ~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~L  356 (459)
                       +... ..+-.....+++++|++|++ |+.   -|++++   +++..+.+    .......++++  +.+++.+++ ..+
T Consensus       265 -~~~~-~~~~~~~~~D~vtgT~hKaL~GP~---GG~I~~---~~~l~~~L----~~a~P~i~gg~l~p~iAA~avAl~e~  332 (493)
T PRK13580        265 -KVFT-GDEDPVPHADIVTTTTHKTLRGPR---GGLVLA---KKEYADAV----DKGCPLVLGGPLPHVMAAKAVALAEA  332 (493)
T ss_pred             -ccch-hhcCCCCCCcEEEeCChhhccCCC---eEEEEe---cHHHHHHH----hhCCCcccCCCccHHHHHHHHHHHHH
Confidence             1100 00001123568899999988 533   377755   67744444    22112223332  322222221 111


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc--CCcceeeecCC-----CHHHHHHHHhcccEEEc
Q 012647          357 GNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL--RQIGMFSFTGL-----NKAQSDNMTNKWHVYMT  429 (459)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~--~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~  429 (459)
                      .+++        .++.++++.++.++|.+.|. +.|    +.++.  .+..+ +++.+     +...+.+.|++.||.+.
T Consensus       333 ~~~e--------f~~y~~~l~~Na~~La~~L~-~~G----~~vv~ggTdshI-V~V~lg~~~~~g~~a~~~L~e~GI~vn  398 (493)
T PRK13580        333 RTPE--------FQKYAQQVVDNARALAEGFL-KRG----ARLVTGGTDNHL-VLIDVTSFGLTGRQAESALLDAGIVTN  398 (493)
T ss_pred             hCcc--------HHHHHHHHHHHHHHHHHHHH-hcC----CCccCCCCCCCE-EEEEeCCHHHHHHHHHHHHHHCCeEEc
Confidence            1111        24567888889999999999 888    45432  23333 33332     22356666666799886


Q ss_pred             C--------C-----C-cEEEcc-----CChhhHHHHHHHHHHHHhh
Q 012647          430 K--------D-----G-RISLAG-----LSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       430 ~--------g-----g-Ris~~~-----~~~e~i~~~~~~l~~~~~~  457 (459)
                      +        +     | ||+...     .++++|+++++.|.++++.
T Consensus       399 ~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~  445 (493)
T PRK13580        399 RNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSN  445 (493)
T ss_pred             cccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHh
Confidence            3        1     2 777543     3579999999999988763

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.74  E-value=1.1e-15  Score=137.35  Aligned_cols=311  Identities=14%  Similarity=0.102  Sum_probs=195.3

Q ss_pred             cHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhC-CCCEEE
Q 012647          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF-PGAKVL  181 (459)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~-~gd~Vl  181 (459)
                      ..+++++|.++...+  .-|+......+|.+.+|+.+.+.       ..++   ..+||.++.++  +...+. +|.+||
T Consensus        35 TdeMr~am~eA~vgD--dVyGeD~tt~rLE~~vA~l~GKE-------AgLF---v~SGTmgNlla--Im~Hc~~rg~eii  100 (384)
T KOG1368|consen   35 TDEMRRAMAEASVGD--DVYGEDPTTNRLEQRVAELFGKE-------AGLF---VPSGTMGNLLA--IMVHCHQRGSEII  100 (384)
T ss_pred             hHHHHHHHhhcccCc--ccccCCccHHHHHHHHHHHhCcc-------ceee---ecccccccHHH--HHHHhcCCCceEE
Confidence            688888888876543  34555556679999999996442       3343   47778888887  455566 999999


Q ss_pred             EcCCCCc-chHH--HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc-----CCCCcEEEEeCCCCCCCC-CCCCHHHHH
Q 012647          182 ISSPTWG-NHKN--IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA-----APGGSFILLHGCAHNPTG-IDPTPEQWE  252 (459)
Q Consensus       182 v~~p~y~-~~~~--~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~-----~~~~~~~ii~~~p~NPTG-~~~s~~~l~  252 (459)
                      +.+-++- .|+.  +....|+.++++.-  ++++.+|++++++++..     +.+.++++.+.|-||-+| .++|.+++.
T Consensus       101 ~gd~~HI~~~E~gg~s~l~gv~~~tv~~--e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~  178 (384)
T KOG1368|consen  101 VGDRAHIHRYEQGGISQLAGVHVRTVKN--ENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELD  178 (384)
T ss_pred             eccchheeehhccChhhhccceeEeeee--CCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHH
Confidence            9886652 2322  23345555555544  67889999999999984     235788998888888776 999999999


Q ss_pred             HHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHH
Q 012647          253 KIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQ  332 (459)
Q Consensus       253 ~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~  332 (459)
                      +|.++|++||+.+..|.+-..-..-   ....++..+....+-+-  -=|||.+|.|   +|-+  +++++..+++-.. 
T Consensus       179 ~v~~lak~~glkLH~DGARi~NAav---asgV~vk~i~~~fDSVs--iCLSKglgAP---VGSV--iVG~k~FI~kA~~-  247 (384)
T KOG1368|consen  179 RVKALAKRHGLKLHMDGARIFNAAV---ASGVPVKKICSAFDSVS--ICLSKGLGAP---VGSV--IVGSKDFIDKARH-  247 (384)
T ss_pred             HHHHHHhccCCeeecchhhhhhHHH---HcCCCHHHHHHhhhhhh--hhhhccCCCC---cccE--EEccHHHHHHHHH-
Confidence            9999999999999999983321110   01113333333322222  2479999876   8998  5688886555332 


Q ss_pred             HHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC-Ccceeee--
Q 012647          333 LKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR-QIGMFSF--  409 (459)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~-~~g~f~~--  409 (459)
                      +++...+.+ --+.+.++++...|++.     | ..++...++    ...|.+.++ ..+   .+.+..+ ....+++  
T Consensus       248 ~RKalGGGm-RQsGvLaaaaLval~~~-----~-~~L~~dHk~----A~~lAe~~~-~~~---~i~v~v~a~etNiv~~~  312 (384)
T KOG1368|consen  248 FRKALGGGM-RQSGVLAAAALVALDEN-----V-PLLRADHKR----AKELAEYIN-TPE---EIRVEVPAVETNIVNMV  312 (384)
T ss_pred             HHHHhcCch-hHHHHHHHHHHHHhhcc-----h-HHHHHHHHH----HHHHHHHhc-ccc---ceeeecchhhcceeeee
Confidence            233222222 22233333333333321     1 123344443    344445555 443   1333333 2233444  


Q ss_pred             ---cCCCHHHHHHHHhcccEEEcCCC----cEEEcc-CChhhHHHHHHHHHHHH
Q 012647          410 ---TGLNKAQSDNMTNKWHVYMTKDG----RISLAG-LSLAKCEYLADAIIDSY  455 (459)
Q Consensus       410 ---~~l~~~~~~~ll~~~gI~v~~gg----Ris~~~-~~~e~i~~~~~~l~~~~  455 (459)
                         .+++.+.+..-++++||.+..+.    ||.+.. .++++++++...+.+.+
T Consensus       313 l~q~~~~~~~l~~~~~k~gi~lm~~~s~r~Rivlh~Qvt~~~ve~~~~~~~k~~  366 (384)
T KOG1368|consen  313 LCQARLTAEELCKFLEKNGILLMGGASRRIRIVLHHQVTDEDVEYVKSVLSKKF  366 (384)
T ss_pred             cccccCCHHHHHHHHHHCCeEEeeccccceEEEEEEecCHHHHHHHHHHHHHHH
Confidence               36677776666667899998875    788765 48999999999995443

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.74  E-value=3.6e-16  Score=154.85  Aligned_cols=305  Identities=13%  Similarity=0.049  Sum_probs=187.2

Q ss_pred             CcHH-HHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecc-cchhHHHHHHHHHHHhCC-CC
Q 012647          102 VLDV-VKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL-SGTGSLRLAAALIERYFP-GA  178 (459)
Q Consensus       102 ~~~~-v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~-ggt~a~~l~~~~~~~~~~-gd  178 (459)
                      ++|. |++++.............-..-+.+.|+.++++++...     +.+|++  +. +||++++.++  .+.+.+ ++
T Consensus        23 ~~~~~v~~a~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~-----~~~v~~--~~gs~T~~~~~~~--~~l~~~~~~   93 (378)
T PRK03080         23 KRPGWQLEALADALLGRSHRQKPVKALLKRVIEGTRELLSLPE-----GYEVGI--VPGSDTGAWEMAL--WSLLGARRV   93 (378)
T ss_pred             CChHHHHHHHHhhhcccCcCCHHHHHHHHHHHHHHHHHhCCCC-----CceEEE--ECCchHHHHHHHH--HhcCCCCcc
Confidence            4666 99998765432100111113445788888888876421     356887  65 8999999983  444554 44


Q ss_pred             EEEEcCCCCcc-hHH-HhhhCCC-CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 012647          179 KVLISSPTWGN-HKN-IFNDARV-PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIA  255 (459)
Q Consensus       179 ~Vlv~~p~y~~-~~~-~~~~~G~-~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~  255 (459)
                      .|++ .-.|+. +.. ..+..|+ +++.++.  +++..+|+++++    .    ++++.+++.+|.||..   .++++|+
T Consensus        94 ~vi~-~g~f~~~~~~~~~~~~g~~~v~~~~~--~~g~~~d~~~i~----~----~~~V~~~h~~t~tG~~---~pi~~I~  159 (378)
T PRK03080         94 DHLA-WESFGSKWATDVVKQLKLEDPRVLEA--DYGSLPDLSAVD----F----DRDVVFTWNGTTTGVR---VPVARWI  159 (378)
T ss_pred             eEEE-eCHHHHHHHHHHHhhcCCCCceEecc--CCCCCCCHhhcC----C----CCCEEEEecCCcccee---ccchhhc
Confidence            5544 334432 333 2356798 9998887  345677877632    2    2346678899999999   4566777


Q ss_pred             HHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc-cCCCCcceEEEEeCChhHHHHHHHHH-
Q 012647          256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNVVCSSSDLAARVKSQL-  333 (459)
Q Consensus       256 ~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~~~v~~~~~~~~~~~~~~-  333 (459)
                      +  +++|+++++|.+ |.++..+.+.         +.  .++++.|..|.++ ++|  +|++++   +++.++++.... 
T Consensus       160 ~--~~~g~~~vVDa~-qs~G~~pidv---------~~--iD~~~~s~~K~l~~P~G--~g~l~v---~~~~~~~~~p~~~  220 (378)
T PRK03080        160 G--ADREGLTICDAT-SAAFALPLDW---------SK--LDVYTFSWQKVLGGEGG--HGMAIL---SPRAVERLESYTP  220 (378)
T ss_pred             c--ccCCCeEEEecc-cccccCCCCH---------HH--CcEEEEehhhhCCCCCc--eEEEEE---CHHHHHhhhcccC
Confidence            7  789999999999 7777543321         11  3688889999985 477  788877   777665543210 


Q ss_pred             -----------------HhhccccccC-CchHHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccCCC
Q 012647          334 -----------------KRLARPMYSN-PPVHGARIVANVVGNPALFDEWKA-EMEMMAGRIKNVRQKLFDSLSAKDKSG  394 (459)
Q Consensus       334 -----------------~~~~~~~~~~-~~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~  394 (459)
                                       .......+.+ ++..+..++...|+   +..  +. .++++.++.+++.+++++.|+ +++. 
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~---~l~--~~gG~e~i~~r~~~l~~~l~~~l~-~~~~-  293 (378)
T PRK03080        221 ARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLD---WAN--SIGGLDALIARTAANASVLYDWAE-KTPW-  293 (378)
T ss_pred             CCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHH---HHH--HcCCHHHHHHHHHHHHHHHHHHHH-hCCC-
Confidence                             0000011112 33333222222221   111  12 357888999999999999998 8752 


Q ss_pred             CCccccc--C--Cc-ceeee--cC----CCHHHHHHHHhcccEEEcCC------C--cEEEccC-ChhhHHHHHHHHHHH
Q 012647          395 KDWSFIL--R--QI-GMFSF--TG----LNKAQSDNMTNKWHVYMTKD------G--RISLAGL-SLAKCEYLADAIIDS  454 (459)
Q Consensus       395 ~~~~~~~--~--~~-g~f~~--~~----l~~~~~~~ll~~~gI~v~~g------g--Ris~~~~-~~e~i~~~~~~l~~~  454 (459)
                        +....  +  .. +...+  .+    .+.+++.+++++ ||.+..|      +  |||+... ++++++.++++|+++
T Consensus       294 --~~~~~~~~~~~s~~i~~~~~~~~~~~~~~~~~~~l~~~-~i~v~~g~~~~~~~~vRis~~~~~t~~di~~l~~al~~~  370 (378)
T PRK03080        294 --ATPLVADPATRSNTSVTLDFVDAQAAVDAAAVAKLLRE-NGAVDIEPYRDAPNGLRIWCGPTVEPADVEALTPWLDWA  370 (378)
T ss_pred             --cccccCCccccCccEEEEEcCCchHHHHHHHHHHHHHc-CCeeccccccCCCCcEEEecCCCCCHHHHHHHHHHHHHH
Confidence              23321  1  12 33433  22    234456677765 7777543      2  9998766 889999999999998


Q ss_pred             Hhhc
Q 012647          455 YHNV  458 (459)
Q Consensus       455 ~~~~  458 (459)
                      ++++
T Consensus       371 ~~~~  374 (378)
T PRK03080        371 FERL  374 (378)
T ss_pred             HHHH
Confidence            8765

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.74  E-value=1.2e-15  Score=152.60  Aligned_cols=157  Identities=21%  Similarity=0.183  Sum_probs=123.5

Q ss_pred             cccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----hhhCCCCe
Q 012647          126 EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARVPW  201 (459)
Q Consensus       126 ~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~G~~v  201 (459)
                      .-..+|++.+|++....        ..++  |++|++|++++  +...+.+||+|+++...|......    +...|+++
T Consensus        64 p~~~~le~~lA~l~g~~--------~av~--~sSGt~Al~~a--l~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v  131 (433)
T PRK08134         64 PTVAVLEERVAALEGGV--------GAIA--TASGQAALHLA--IATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIET  131 (433)
T ss_pred             hHHHHHHHHHHHHhCCC--------cEEE--eCCHHHHHHHH--HHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEE
Confidence            34688999999996542        3566  89999999998  444578999999999999765443    35589999


Q ss_pred             eeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCC
Q 012647          202 SEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN  281 (459)
Q Consensus       202 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~  281 (459)
                      +.++.+       |++++++++++   ++++|++.+|+||||.+   .++++|+++|+++|+++|+|.++......    
T Consensus       132 ~~vd~~-------d~~~l~~~i~~---~TklV~~e~~~np~g~v---~Di~~I~~la~~~gi~livD~t~a~~~~~----  194 (433)
T PRK08134        132 TFVKPG-------DIDGWRAAIRP---NTRLLFGETLGNPGLEV---LDIPTVAAIAHEAGVPLLVDSTFTTPYLL----  194 (433)
T ss_pred             EEECCC-------CHHHHHHhcCC---CCeEEEEECCCcccCcc---cCHHHHHHHHHHcCCEEEEECCCcccccC----
Confidence            888762       78999999986   78889999999999999   67888999999999999999995432211    


Q ss_pred             ChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012647          282 DASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (459)
Q Consensus       282 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (459)
                      .  .+     ..+.++++.|.+|.++.+|-.+|.+++
T Consensus       195 ~--pl-----~~GaD~vv~S~tK~l~g~g~~~gG~v~  224 (433)
T PRK08134        195 R--PF-----EHGADLVYHSATKFLGGHGTAIGGVLV  224 (433)
T ss_pred             C--ch-----hcCCCEEEeccccccCCCCCceEEEEE
Confidence            0  11     224578899999999988888888754

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.73  E-value=5.9e-17  Score=141.72  Aligned_cols=167  Identities=22%  Similarity=0.147  Sum_probs=125.2

Q ss_pred             cHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchH-HHhhhCCCCeeeeee
Q 012647          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK-NIFNDARVPWSEYRY  206 (459)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~-~~~~~~G~~v~~v~~  206 (459)
                      +.++++.++++++.      ..+++++  +.|+++++.++...  ...+|++|+++.++|+++. ..++..|++++.++.
T Consensus         2 ~~~~~~~l~~~~~~------~~~~~~~--~~~~t~a~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~   71 (170)
T cd01494           2 LEELEEKLARLLQP------GNDKAVF--VPSGTGANEAALLA--LLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPV   71 (170)
T ss_pred             HHHHHHHHHHHcCC------CCCcEEE--eCCcHHHHHHHHHH--hCCCCCEEEEeecccceehhhHHHhcCCEEEEecc
Confidence            36889999999741      2567888  88999999998433  3457999999999999888 788899999999998


Q ss_pred             ecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH
Q 012647          207 YDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (459)
Q Consensus       207 ~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~  286 (459)
                      ++......+++.+++....  +++.++++++++||+|...+.   ++|.++|+++|+++|+|++|..+......      
T Consensus        72 ~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~g~~~~~---~~l~~~~~~~~~~li~D~a~~~~~~~~~~------  140 (170)
T cd01494          72 DDAGYGGLDVAILEELKAK--PNVALIVITPNTTSGGVLVPL---KEIRKIAKEYGILLLVDAASAGGASPAPG------  140 (170)
T ss_pred             CCCCccchhhhhhhhcccc--CceEEEEEecCcCCCCeEcCH---HHHHHHHHHcCCEEEEecccccccccccc------
Confidence            5333233333355444332  477888899999999999654   77888999999999999999887754210      


Q ss_pred             HHHHhcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012647          287 RLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (459)
Q Consensus       287 ~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (459)
                       ......+.++++.|++|.++.  .|+|++++
T Consensus       141 -~~~~~~~~d~~~~s~~K~~~~--~~~G~l~~  169 (170)
T cd01494         141 -VLIPEGGADVVTFSLHKNLGG--EGGGVVIV  169 (170)
T ss_pred             -cccccccCCEEEEEcccccCC--CceEEEEe
Confidence             011223467888999999985  56899854

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.73  E-value=2.2e-15  Score=147.15  Aligned_cols=305  Identities=15%  Similarity=0.054  Sum_probs=191.3

Q ss_pred             cHHHHHHHHHHhhc---CCCCCCCCC-------cccHHHHHHHHHHHhcCCCCccccCceEEeeccc-chhHHHHHHHHH
Q 012647          103 LDVVKKAENLMLER---GENKEYLPI-------EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS-GTGSLRLAAALI  171 (459)
Q Consensus       103 ~~~v~~a~~~~~~~---~~~~~Y~~~-------~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g-gt~a~~l~~~~~  171 (459)
                      |..|++++.+.+..   .....|...       .-+.+.|+.+++++...     +..+|++  +.| ||++++.+  +.
T Consensus         4 p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~-----~~~~v~~--~~gsgT~a~ea~--~~   74 (349)
T TIGR01364         4 PEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIP-----DNYEVLF--LQGGATGQFAAV--PL   74 (349)
T ss_pred             CHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCC-----CCceEEE--EcCCchHHHHHH--HH
Confidence            67788888887752   111122111       23345566666665431     1245777  666 99999998  55


Q ss_pred             HHhCCCCEEEEcCCCCcc--hHHHhhhCCCCeeeeeeec--CCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCC
Q 012647          172 ERYFPGAKVLISSPTWGN--HKNIFNDARVPWSEYRYYD--PKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPT  247 (459)
Q Consensus       172 ~~~~~gd~Vlv~~p~y~~--~~~~~~~~G~~v~~v~~~~--~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s  247 (459)
                      +.+.+||++++..-+..+  +..+++..|+ ++.+...+  +++..+|++.++.  +   ++++++.++...|.||+..+
T Consensus        75 nl~~~~~~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~v~~th~ETstGv~~~  148 (349)
T TIGR01364        75 NLLAEGKVADYIVTGAWSKKAAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWEI--S---EDAAYVHYCANETIHGVEFR  148 (349)
T ss_pred             hcCCCCCeEEEEECCHHHHHHHHHHHHhCC-cEEEeccccCCCCCCCCHHhcCC--C---CCCCEEEEcCCCCcccEecc
Confidence            556789998888877654  4567778898 77776531  2334567776552  2   25677888888999999754


Q ss_pred             HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHH
Q 012647          248 PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAA  327 (459)
Q Consensus       248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~  327 (459)
                              ++++.+++++++|.+ +.++..+.+.         +..+  +++.|..|.+|++|  +|++++   +++.++
T Consensus       149 --------~l~~~~~~l~iVDav-ss~g~~~id~---------~~~d--~~~~ssqK~lgP~G--lg~l~~---s~~~~~  203 (349)
T TIGR01364       149 --------ELPDVKNAPLVADMS-SNILSRPIDV---------SKFG--LIYAGAQKNIGPAG--LTVVIV---RKDLLG  203 (349)
T ss_pred             --------eecccCCCeEEEEcc-ccccCccCCH---------HHcc--EEEEecccccCCCc--eEEEEE---CHHHHh
Confidence                    556678999999999 7777543321         2222  88889999999998  788877   777665


Q ss_pred             HHHHH------HHh-h-ccccccCCchHHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccC-CCCCc
Q 012647          328 RVKSQ------LKR-L-ARPMYSNPPVHGARIVANVVGNPALFDEWKA-EMEMMAGRIKNVRQKLFDSLSAKDK-SGKDW  397 (459)
Q Consensus       328 ~~~~~------~~~-~-~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~  397 (459)
                      ++...      ... . ....+.+|+.....+....|+   +..  .+ .++++.++++++.+++++.|+ +++ +-   
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~---~l~--~~gG~e~i~~r~~~l~~~l~~~l~-~~~gl~---  274 (349)
T TIGR01364       204 RASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFK---WLK--EQGGVKAIEKRNQAKAQLLYDTID-NSNGFY---  274 (349)
T ss_pred             hcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHH---HHH--HcCCHHHHHHHHHHHHHHHHHHHH-hCCCee---
Confidence            54221      010 0 011122444444444333332   110  22 378999999999999999999 884 31   


Q ss_pred             cccc-C--Cc-ceeeec--CC--CHHHHHHHHhcccEEEcCC----C--cEEEccC-ChhhHHHHHHHHHHHHhh
Q 012647          398 SFIL-R--QI-GMFSFT--GL--NKAQSDNMTNKWHVYMTKD----G--RISLAGL-SLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       398 ~~~~-~--~~-g~f~~~--~l--~~~~~~~ll~~~gI~v~~g----g--Ris~~~~-~~e~i~~~~~~l~~~~~~  457 (459)
                      .... +  .. ....+.  +.  ..++...+ .++|+.+.+|    |  |+|+... ++|||+.++++|+++.++
T Consensus       275 ~~~~~~~~rs~~v~sf~~~~~~~~~~~~~~~-~~~Gi~~~~~~~~~g~vRvS~~~~nt~edid~l~~al~~~~~~  348 (349)
T TIGR01364       275 RNPVDPRNRSRMNVVFTLGNEELEKRFLKEA-EERGLVSLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFQKK  348 (349)
T ss_pred             ccCCCHHHcCCeEEEEecCChhHhHHHHHHH-HHCCCcccCCccccCeeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence            1111 1  12 223222  22  23333444 4469977666    3  9998765 889999999999998764

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK06541 hypothetical protein; Provisional

Probab=99.73  E-value=5e-15  Score=149.58  Aligned_cols=343  Identities=12%  Similarity=0.071  Sum_probs=197.4

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC---CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE---NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~---~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      +...||+..|..-...++.  +|.|.+++.+.+++..   ...| ......++.+.+++.....      -+.+.+  ++
T Consensus        51 G~~ylD~~~g~~~~~lGh~--~p~v~~Av~~q~~~~~~~~~~~~-~~~~~~~la~~l~~~~p~~------~~~v~f--~~  119 (460)
T PRK06541         51 GKRYLDGLAGLFVVQVGHG--RAELAEAAAKQAGTLAFFPLWSY-AHPPAIELAERLAALAPGD------LNRVFF--TT  119 (460)
T ss_pred             CCEEEECCccHHhccCCCC--CHHHHHHHHHHHhhCcCcccccc-CCHHHHHHHHHHHHhCCCC------cCEEEE--cC
Confidence            4578898887542233443  7889999988886421   0122 2222334444444442111      257888  99


Q ss_pred             cchhHHHHHHHHHHHhC------CCCEEEEcCCCCcchHHHhh-hCC------------CCeeeeeeecCCC---CCCC-
Q 012647          159 SGTGSLRLAAALIERYF------PGAKVLISSPTWGNHKNIFN-DAR------------VPWSEYRYYDPKT---VGLD-  215 (459)
Q Consensus       159 ggt~a~~l~~~~~~~~~------~gd~Vlv~~p~y~~~~~~~~-~~G------------~~v~~v~~~~~~~---~~~d-  215 (459)
                      +|++|++.+.++.....      ...+|+...-+|.+...... ..|            ..+..+|......   ++-+ 
T Consensus       120 sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  199 (460)
T PRK06541        120 GGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDP  199 (460)
T ss_pred             CcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCH
Confidence            99999999988876652      13688888888876533222 111            1122333211000   1112 


Q ss_pred             -------HHHHHHHHHcC-CCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH
Q 012647          216 -------FEGMIADIKAA-PGGSFILLHGCAHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (459)
Q Consensus       216 -------~e~l~~~i~~~-~~~~~~ii~~~p~NPTG~~~s-~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~  286 (459)
                             ++.+++.+... ++...++++...++++|.+.+ ++.+++|.++|++||+++|+||++.+++-.+   ..+..
T Consensus       200 ~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G---~~~a~  276 (460)
T PRK06541        200 EAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLG---EMFGC  276 (460)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc---hhhhh
Confidence                   35677777632 234556665556999998765 8889999999999999999999988885321   12222


Q ss_pred             HHHHhcCCeEEEEEcCCcCcccCCC-CcceEEEEeCChhHHHHHHHHHHhh-ccccccCCchHHHHHHHHHhCChhhHHH
Q 012647          287 RLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARVKSQLKRL-ARPMYSNPPVHGARIVANVVGNPALFDE  364 (459)
Q Consensus       287 ~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~~~~~~~  364 (459)
                      .. .+-.++++   +|+|.++ .|+ ++|++++   +++..+.+....... ...++ +.+.++..++...|+   ..  
T Consensus       277 ~~-~gv~PDiv---t~gK~l~-~G~~pigav~~---~~~i~~~~~~~~~~~~~~~T~-~gnp~~~aaala~l~---~l--  342 (460)
T PRK06541        277 ER-FGYVPDII---TCAKGIT-SGYSPLGAMIA---SDRLFEPFLDGPTMFLHGYTF-GGHPVSAAVALANLD---IF--  342 (460)
T ss_pred             hh-cCCCCCEE---Eeccccc-CCccceeEEEE---cHHHHHHhhcCCCccccCCCC-CCCHHHHHHHHHHHH---HH--
Confidence            11 12224443   5899999 887 9999976   777444432211111 11222 233333333333322   10  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCcccccCCcceeeec--C-------CC---------HHHHHHHHhccc
Q 012647          365 WKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFT--G-------LN---------KAQSDNMTNKWH  425 (459)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~g~f~~~--~-------l~---------~~~~~~ll~~~g  425 (459)
                       .  -+...++.+++.++|.+.|+ ++. .|. +..+...|.++.+-  .       ++         ..+...+++ +|
T Consensus       343 -~--~~~~~~~~~~~g~~l~~~L~-~l~~~~~-v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G  416 (460)
T PRK06541        343 -E--REGLLDHVRDNEPAFRATLE-KLLDLPI-VGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFE-AG  416 (460)
T ss_pred             -H--hccHHHHHHHHHHHHHHHHH-HhhcCCC-eEEEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHh-CC
Confidence             0  02345777788888888887 652 110 12233454444321  1       00         012345555 69


Q ss_pred             EEEcCC--C----cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          426 VYMTKD--G----RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       426 I~v~~g--g----Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                      |.+.+.  |    ||+..- .+++++++++++|.++++++
T Consensus       417 i~~~~~~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~  456 (460)
T PRK06541        417 LYCRADDRGDPVVQLAPPLISGQEEFDEIEQILRSVLTEA  456 (460)
T ss_pred             eEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            999763  3    677552 38999999999999998753

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.72  E-value=6.4e-15  Score=147.41  Aligned_cols=340  Identities=13%  Similarity=0.075  Sum_probs=190.9

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...||+..|......|..  +|.|.+++.+.++......+ +.....+|-+.+.+.+..      ..+.+.+  +++|+
T Consensus        52 G~~yiD~~~g~~~~~lGh~--~p~v~~ai~~q~~~~~~~~~-~~~~~~~la~~L~~~~~~------~~~~v~f--~~SGs  120 (433)
T PRK00615         52 GKTFIDFCGSWGSLIHGHS--HPKICDAIQQGAERGTSYGL-TSEQEILFAEELFSYLGL------EDHKIRF--VSSGT  120 (433)
T ss_pred             CCEEEEcccchhccccCCC--CHHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHhCCC------CcCEEEE--eCchH
Confidence            4578898877542233443  78999999888865432222 333344555555555321      1257888  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----hhhCCCC---e-eee--eeecCC--C-CCCCHHHHHHHHHcCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARVP---W-SEY--RYYDPK--T-VGLDFEGMIADIKAAPG  228 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~G~~---v-~~v--~~~~~~--~-~~~d~e~l~~~i~~~~~  228 (459)
                      +|++.+.++.+.+....+|+...-+|.++...    ....+-.   . ...  +.....  . .--|++.+++.+....+
T Consensus       121 EA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~  200 (433)
T PRK00615        121 EATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGH  200 (433)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCC
Confidence            99999988876665557888888888775311    1111100   0 000  000000  0 01268888888865444


Q ss_pred             CcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc
Q 012647          229 GSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (459)
Q Consensus       229 ~~~~ii~~~p~NPTG~~~-s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (459)
                      +..++|+.....-.|... +++-+++|.++|++||+++|+||++.++..+    ..... ...+..++++   +|+|.+|
T Consensus       201 ~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R~G----~~ga~-~~~gv~PDi~---~~gK~lg  272 (433)
T PRK00615        201 RVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFRVA----QGGAA-AIYHVKPDIT---VYGKILG  272 (433)
T ss_pred             ceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccccccc----HhHHH-HhcCCCCCeE---EEccccc
Confidence            556666666565567654 5777999999999999999999998776332    11122 2222234443   4899998


Q ss_pred             cCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHH---HhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          308 LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVAN---VVGNPALFDEWKAEMEMMAGRIKNVRQKLF  384 (459)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~  384 (459)
                       .|+.+|++++   +++..+.+..........++ +.+.++..++..   .++++++       +++.++.-+..++.|.
T Consensus       273 -gG~p~~av~~---~~~i~~~~~~~~~~~~~~T~-~g~p~~~aa~la~L~~i~~~~~-------~~~~~~~g~~l~~~l~  340 (433)
T PRK00615        273 -GGLPAAAVVA---HKSIMDHLAPEGTIFQAGTL-SGNPLAMAAGKASINLCREQGF-------YTQLSTLEQNFLSPIE  340 (433)
T ss_pred             -CCcceeeeee---cHHHHhhhcCCCCcccCCCC-cccHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHHHHHHH
Confidence             6788888765   77744443211011111222 223333333322   3333222       1222222222233334


Q ss_pred             HHHhhccCCCCCcccccCCcceeee--cCC-----------CH----HHHHHHHhcccEEEcCCC--c--EEEccCChhh
Q 012647          385 DSLSAKDKSGKDWSFILRQIGMFSF--TGL-----------NK----AQSDNMTNKWHVYMTKDG--R--ISLAGLSLAK  443 (459)
Q Consensus       385 ~~L~~~~g~~~~~~~~~~~~g~f~~--~~l-----------~~----~~~~~ll~~~gI~v~~gg--R--is~~~~~~e~  443 (459)
                      +.+. +.|+|  +.... .|.++.+  ..-           +.    .+...+++ +||++.+.+  .  +|... ++++
T Consensus       341 ~~~~-~~g~~--v~~~r-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~~~ls~~h-t~~d  414 (433)
T PRK00615        341 EMIR-SQGFP--VSLVR-YGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFS-KGVYLSPSPFEASFLSSAH-SMEN  414 (433)
T ss_pred             HHHH-HcCCC--eEEEe-eceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHH-CCeeecCccccccceecCC-CHHH
Confidence            4444 44432  22222 3333321  110           11    23456666 599998874  3  67766 9999


Q ss_pred             HHHHHHHHHHHHhhc
Q 012647          444 CEYLADAIIDSYHNV  458 (459)
Q Consensus       444 i~~~~~~l~~~~~~~  458 (459)
                      |+++++++.++++++
T Consensus       415 id~~~~a~~~~~~~~  429 (433)
T PRK00615        415 LDYAQNVLIDSLEKV  429 (433)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999864

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.72  E-value=4.5e-15  Score=148.35  Aligned_cols=164  Identities=17%  Similarity=0.090  Sum_probs=120.7

Q ss_pred             CCCCC--CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----H
Q 012647          120 KEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----I  193 (459)
Q Consensus       120 ~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~----~  193 (459)
                      +.|+.  ..-...|++.++++...        +..++  +++|+.|+..+  +.+.+.+||+|+++...|.....    .
T Consensus        61 ~~Ysr~~~p~~~~Le~~lA~l~g~--------~~av~--~sSG~aAi~~a--l~all~~Gd~Vv~~~~~y~~t~~~~~~~  128 (436)
T PRK07812         61 NIYTRIMNPTQDVVEQRIAALEGG--------VAALL--LASGQAAETFA--ILNLAGAGDHIVSSPRLYGGTYNLFHYT  128 (436)
T ss_pred             ccccCCCCchHHHHHHHHHHHhCC--------CeEEE--EccHHHHHHHH--HHHHhCCCCEEEEeCCcchHHHHHHHHH
Confidence            34553  33456888999988543        23455  68889999887  55667899999999988876543    3


Q ss_pred             hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCC
Q 012647          194 FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG  273 (459)
Q Consensus       194 ~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~  273 (459)
                      +...|++++.++ + .    .|++.+++++++   ++++|++.+|+||+|.+   .++++|+++|+++|+++|+|+++..
T Consensus       129 l~~~Gi~v~~vd-d-~----~d~e~l~~ai~~---~tklV~ie~~sNp~G~v---~Dl~~I~~la~~~gi~liVD~t~a~  196 (436)
T PRK07812        129 LPKLGIEVSFVE-D-P----DDLDAWRAAVRP---NTKAFFAETISNPQIDV---LDIPGVAEVAHEAGVPLIVDNTIAT  196 (436)
T ss_pred             hhcCeEEEEEEC-C-C----CCHHHHHHhCCC---CCeEEEEECCCCCCCee---cCHHHHHHHHHHcCCEEEEECCCcc
Confidence            345787777774 1 1    289999998875   78899999999999999   6788899999999999999999543


Q ss_pred             CCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012647          274 FASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (459)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (459)
                      ....    .  .+     ..+.++++.|++|.+|..|--+|++++
T Consensus       197 ~~~~----~--pl-----~~GaDivv~S~tK~lgg~G~~i~G~vv  230 (436)
T PRK07812        197 PYLI----R--PL-----EHGADIVVHSATKYLGGHGTAIAGVIV  230 (436)
T ss_pred             cccC----C--ch-----hcCCCEEEEecccccCCCCCeEEEEEE
Confidence            2110    0  11     123457779999999888777888754

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.72  E-value=7.5e-15  Score=144.16  Aligned_cols=301  Identities=14%  Similarity=0.100  Sum_probs=186.4

Q ss_pred             CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCc-chHHHhhhCC
Q 012647          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWG-NHKNIFNDAR  198 (459)
Q Consensus       120 ~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~-~~~~~~~~~G  198 (459)
                      ..|.....+.+|.+.+++++..        +.++.  +++||.|++++  +...+.|||.|  +..+|. .....+...|
T Consensus        72 d~Yagd~s~~~LE~~vAe~lG~--------e~aV~--v~sGTaAl~ll--~~l~v~pGd~V--p~n~~f~Tt~ahI~~~G  137 (460)
T PRK13237         72 EAYAGSRNFYHLEETVQEYYGF--------KHVVP--THQGRGAENLL--SRIAIKPGQYV--PGNMYFTTTRYHQELNG  137 (460)
T ss_pred             hhhcCCCcHHHHHHHHHHHHCC--------CeEEE--eCCHHHHHHHH--HHhCCCCcCEE--CCccchHhhHHHHHhCC
Confidence            4588788889999999999743        45777  89999999986  33346799965  444443 3334367788


Q ss_pred             CCeeeeeee--------cCCCCCCCHHHHHHHHHcC-CCCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCCeeEEe
Q 012647          199 VPWSEYRYY--------DPKTVGLDFEGMIADIKAA-PGGSFILLHGCAHNPT-GIDPTPEQWEKIADVIQEKNHIPFFD  268 (459)
Q Consensus       199 ~~v~~v~~~--------~~~~~~~d~e~l~~~i~~~-~~~~~~ii~~~p~NPT-G~~~s~~~l~~i~~l~~~~~~~ii~D  268 (459)
                      +..+.+..+        .+.++.+|++.++++|++. ++++.++.+.+++|-. |...|.+++++|.++|++||+.+|+|
T Consensus       138 a~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~D  217 (460)
T PRK13237        138 GIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFD  217 (460)
T ss_pred             cEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEE
Confidence            855544311        2446889999999999863 2233344445578888 78999999999999999999999999


Q ss_pred             ccCCCCC-----------CCCCCCChhHHHHHHhc--CCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHh
Q 012647          269 VAYQGFA-----------SGSLDNDASSVRLFATR--GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKR  335 (459)
Q Consensus       269 eay~~~~-----------~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~  335 (459)
                      .+. .+.           +.+     .++...+.+  .--+.++.|++|.++.+   +|.++ +++++++.+++......
T Consensus       218 aAr-a~gna~fI~~re~~y~~-----~~i~ei~~e~~s~aD~~t~S~~K~~~~~---~GG~i-~t~D~eL~~~~r~~~~~  287 (460)
T PRK13237        218 ATR-CVENAYFIKEREEGYQD-----KSIKEIVHEMFSYADGCTMSGKKDCLVN---IGGFL-AMNDEELFDEAKELVVV  287 (460)
T ss_pred             Ccc-hhcChhhhcccccccCC-----CcHhHHhhhccCcCcEEEEeCCCCCCCC---CceEE-EECCHHHHHHHHHhccc
Confidence            994 333           211     122111110  11356777899998754   44443 47788855555443211


Q ss_pred             hcc-ccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecC---
Q 012647          336 LAR-PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTG---  411 (459)
Q Consensus       336 ~~~-~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~---  411 (459)
                      .-. .++.+.+.--..+.+.-|.+      |.++  .+.+.--...++|.+.|. +.|    +.++.|.||--+|++   
T Consensus       288 ~eG~~tygg~~grd~~alAvgl~E------~~~~--~y~~~ri~~~~~l~~~L~-~~G----vpv~~p~ggH~v~vda~~  354 (460)
T PRK13237        288 YEGMPSYGGMAGRDMEAMAIGIEE------SVQY--EYIEHRVGQVRYLGEKLL-AAG----VPIVEPVGGHAVFLDARR  354 (460)
T ss_pred             cCCCcCCCChhhhHHHHHHhHHHh------hchH--HHHHHHHHHHHHHHHHHH-HCC----CceecCCCceEEEEEhHH
Confidence            101 11112211111122211211      1111  222223335678888898 888    467778888666653   


Q ss_pred             ----C------CHHHHHHHHhcccEEEcCC-----------C----------cEEEcc--CChhhHHHHHHHHHHHHhh
Q 012647          412 ----L------NKAQSDNMTNKWHVYMTKD-----------G----------RISLAG--LSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       412 ----l------~~~~~~~ll~~~gI~v~~g-----------g----------Ris~~~--~~~e~i~~~~~~l~~~~~~  457 (459)
                          +      ...++..|..+.||--..-           |          |+++.-  +|.+++++++++|.++.++
T Consensus       355 ~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~  433 (460)
T PRK13237        355 FLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKH  433 (460)
T ss_pred             hCCCCCcccChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHh
Confidence                2      1244556777778744321           1          777652  4889999999999998765

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.71  E-value=2.6e-15  Score=148.10  Aligned_cols=193  Identities=21%  Similarity=0.166  Sum_probs=132.7

Q ss_pred             cHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEE
Q 012647          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLI  182 (459)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv  182 (459)
                      ..+..+++.+.++.+....+  ..-..+|.+.+++++..        ++++.  +++||.|+.++...+ .+.+||+|++
T Consensus         4 ~~e~~~~v~~~l~s~~~~~~--g~~~~~fE~~~a~~~g~--------~~~~~--~~sgt~Al~~al~~l-~~~~gdeVi~   70 (363)
T PF01041_consen    4 TEEEIDAVLEVLRSGWLSTY--GPYVEEFEKEFAEYFGV--------KYAVA--VSSGTSALHLALRAL-GLGPGDEVIV   70 (363)
T ss_dssp             HHHHHHHHHHHHHHTCCSSS--SHHHHHHHHHHHHHHTS--------SEEEE--ESSHHHHHHHHHHHT-TGGTTSEEEE
T ss_pred             CHHHHHHHHHHHHhCCccCC--CHHHHHHHHHHHHHhCC--------CeEEE--eCChhHHHHHHHHhc-CCCcCceEec
Confidence            45667777787776542222  44578999999999753        56777  899999999984432 2459999999


Q ss_pred             cCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 012647          183 SSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN  262 (459)
Q Consensus       183 ~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~  262 (459)
                      +.-+|......+..+|++++.++++ ++++.+|++.+++.+++   ++++|++   .+.-|..   .++++|.++|+++|
T Consensus        71 p~~t~~~~~~ai~~~G~~pv~~Di~-~~~~~id~~~~~~~i~~---~t~ai~~---~h~~G~~---~d~~~i~~~~~~~~  140 (363)
T PF01041_consen   71 PAYTFPATASAILWAGAEPVFVDID-PETLNIDPEALEKAITP---KTKAILV---VHLFGNP---ADMDAIRAIARKHG  140 (363)
T ss_dssp             ESSS-THHHHHHHHTT-EEEEE-BE-TTTSSB-HHHHHHHHHT---TEEEEEE---E-GGGB------HHHHHHHHHHTT
T ss_pred             CCCcchHHHHHHHHhccEEEEEecc-CCcCCcCHHHHHHHhcc---CccEEEE---ecCCCCc---ccHHHHHHHHHHcC
Confidence            9999999999999999999999996 56899999999999997   6777774   3455666   78999999999999


Q ss_pred             CeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcC--CcCcccCCCCcceEEEEeCChhHHHHHHH
Q 012647          263 HIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY--SKNLGLYAERIGAMNVVCSSSDLAARVKS  331 (459)
Q Consensus       263 ~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~RiG~~~~v~~~~~~~~~~~~  331 (459)
                      ++||+|.+ +.++.. .  +...    +... .++.+.||  +|.+. .|. =|++  ++.++++.+++..
T Consensus       141 i~lIeD~a-~a~g~~-~--~g~~----~G~~-gd~~~fSf~~~K~i~-~ge-GG~v--~~~~~~~~~~~~~  198 (363)
T PF01041_consen  141 IPLIEDAA-QAFGAR-Y--KGRP----VGSF-GDIAIFSFHPTKIIT-TGE-GGAV--VTNDPELAERARA  198 (363)
T ss_dssp             -EEEEE-T-TTTT-E-E--TTEE----TTSS-SSEEEEESSTTSSS--SSS--EEE--EESTHHHHHHHHH
T ss_pred             CcEEEccc-cccCce-e--CCEe----ccCC-CCceEecCCCCCCCc-CCC-CeeE--EecHHHHHHHhhh
Confidence            99999999 555421 0  0000    1111 24666676  69886 554 2555  5778886665554

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.71  E-value=1.9e-14  Score=144.85  Aligned_cols=339  Identities=12%  Similarity=0.044  Sum_probs=193.1

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCC---CCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK---EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~---~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      +...+|+..|..-...|+.  +|.|.+++.+.+++....   .| +.....+|.+.+++.....     ..+.+.+  ++
T Consensus        53 G~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~ql~~~~~~~~~~~-~~~~~~~lAe~L~~~~p~~-----~~~~v~f--~~  122 (441)
T PRK05769         53 GNVYLDFNAGIAVTNVGHA--HPKVVKAVKEQAEKFLHYSLTDF-YYEPAVELAERLVEIAPGG-----FEKKVFF--TN  122 (441)
T ss_pred             CCEEEECCCchhhcccCCC--CHHHHHHHHHHHHhccCccCccc-CCHHHHHHHHHHHHhCCCC-----CCCEEEE--CC
Confidence            3578898888643333443  688999998888643111   12 1222334444444442110     0257888  99


Q ss_pred             cchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhh-CCC-------------CeeeeeeecCCCC--C-C-------
Q 012647          159 SGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-ARV-------------PWSEYRYYDPKTV--G-L-------  214 (459)
Q Consensus       159 ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~G~-------------~v~~v~~~~~~~~--~-~-------  214 (459)
                      +|++|++.+.++.......++|+...-+|.+....... .|.             .+..+|..+....  . -       
T Consensus       123 SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (441)
T PRK05769        123 SGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGN  202 (441)
T ss_pred             chHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHH
Confidence            99999999988877665557899988888766432221 111             1223333110000  0 0       


Q ss_pred             -CHHHHHHHH-Hc--CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH
Q 012647          215 -DFEGMIADI-KA--APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF  289 (459)
Q Consensus       215 -d~e~l~~~i-~~--~~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~  289 (459)
                       +++.+++.+ +.  .++...++++-......|.. .+++.+++|.++|++||+++|+||++.+++..+   ..+....+
T Consensus       203 ~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G---~~~a~~~~  279 (441)
T PRK05769        203 AVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTG---KMFAIEHF  279 (441)
T ss_pred             HHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---ceehhhcc
Confidence             123355523 21  13456666666666667765 567779999999999999999999998776432   11122121


Q ss_pred             HhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012647          290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEM  369 (459)
Q Consensus       290 ~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~  369 (459)
                       ...++++   +|||.++ .|+++|++++   +++.    ..........++ +.+.+++.++...|+   ..   + . 
T Consensus       280 -gv~pDiv---t~~K~l~-~G~p~gav~~---~~~i----~~~~~~~~~~T~-~g~p~~~aaa~a~L~---~l---~-~-  338 (441)
T PRK05769        280 -GVEPDII---TLAKAIA-GGLPLGAVIG---RAEL----MFLPPGSHANTF-GGNPVAAAAALATLE---EL---E-E-  338 (441)
T ss_pred             -CCCCCEE---EEccccc-CCcccEEEEE---ehhh----hhcCCCCCCCCC-CcCHHHHHHHHHHHH---HH---H-H-
Confidence             2223444   5899999 7999999866   6663    222222223333 334555555544442   11   1 1 


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccC--CCCCcccccCCcceee--ecCC----C----HHHHHHHHhcccEEEcCCC----c
Q 012647          370 EMMAGRIKNVRQKLFDSLSAKDK--SGKDWSFILRQIGMFS--FTGL----N----KAQSDNMTNKWHVYMTKDG----R  433 (459)
Q Consensus       370 ~~~~~~~~~~~~~l~~~L~~~~g--~~~~~~~~~~~~g~f~--~~~l----~----~~~~~~ll~~~gI~v~~gg----R  433 (459)
                       ...++.+++-++|.+.|+ ++.  .|- +..+...|.++.  +.+-    +    ..+.+.+++ +||.+.+.|    |
T Consensus       339 -~~~~~~~~~g~~l~~~L~-~l~~~~~~-~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~Gil~~~~~~~~lr  414 (441)
T PRK05769        339 -GLLENAQKLGEYLRKELK-ELKEKYEF-IGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFK-RGLLLLGAGKSAIR  414 (441)
T ss_pred             -HHHHHHHHHHHHHHHHHH-HHHHhCCC-eeeeecceEEEEEEeccCCccccHHHHHHHHHHHHh-CCcEEecCCCCEEE
Confidence             345566666667777666 542  110 111222232221  1111    1    123445555 699998765    6


Q ss_pred             EEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          434 ISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       434 is~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                      ++... .++++|+++++++.+++.++
T Consensus       415 ~~p~l~~t~~~id~~~~~l~~~l~~~  440 (441)
T PRK05769        415 IIPPLIITEEEADIGLEILEEAIKEL  440 (441)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            66443 38999999999999998764

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.71  E-value=3.1e-15  Score=146.73  Aligned_cols=312  Identities=13%  Similarity=0.046  Sum_probs=193.9

Q ss_pred             CCccCcHHHHHHHHHHhhcC--------CCCCCCC--CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHH
Q 012647           98 LQPYVLDVVKKAENLMLERG--------ENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLA  167 (459)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~--------~~~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~  167 (459)
                      ++..+|+.|++++.+.+.+-        ......+  ..-+.+.++.++++++...     ..++++ .+.+|+++++.+
T Consensus        10 GP~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~-----~~~v~~-~~gsgt~~~Ea~   83 (360)
T PRK05355         10 GPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPD-----NYKVLF-LQGGASLQFAMV   83 (360)
T ss_pred             CCCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCC-----CcEEEE-EcCCchHHHHHH
Confidence            44556899999998876210        0011212  1344677777777765310     234544 157788999998


Q ss_pred             HHHHHHhCCCCEEEEcCCCCcch--HHHhhhCCCCeeeeeeecCCCCCCCHHHHHH-HHHcCCCCcEEEEeCCCCCCCCC
Q 012647          168 AALIERYFPGAKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIA-DIKAAPGGSFILLHGCAHNPTGI  244 (459)
Q Consensus       168 ~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~-~i~~~~~~~~~ii~~~p~NPTG~  244 (459)
                        +.+.+.+||++++..-+..++  ..+++.+|.. ..++..+.+ ...+..++++ .+++   +++++.++...|.||+
T Consensus        84 --~~nl~~~g~~~l~i~~G~fg~r~~~~a~~~g~~-~~~~~~~~~-g~~~~~~~~~~~l~~---~~~~V~~th~eTstGv  156 (360)
T PRK05355         84 --PMNLLGGGKKADYVDTGSWSKKAIKEAKKYGEV-NVAASSEDD-GFTYIPPLDEWQLSD---DAAYVHYTSNETIDGT  156 (360)
T ss_pred             --HHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCc-eEEeccccc-CCCCCCChhhccCCC---CCCEEEEccCCCcceE
Confidence              677788999988887766543  5577788864 555553212 3344444444 5654   5667878888999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChh
Q 012647          245 DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (459)
Q Consensus       245 ~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~  324 (459)
                      ..+  ++++|      +|+++++|.+ +.++..+.+         ++..+  +++.|..|.+|++|  +|++++   +++
T Consensus       157 ~~~--~i~~i------~g~l~vVDav-ss~g~~~id---------v~~~d--~~~~ssqK~lgP~G--lg~l~~---s~~  211 (360)
T PRK05355        157 EFH--ELPDT------GDVPLVADMS-SDILSRPID---------VSKFG--LIYAGAQKNIGPAG--LTIVIV---RED  211 (360)
T ss_pred             ecC--ccccc------CCCcEEEEcC-ccccCccCC---------HHHcc--EEEEeccccccCCc--eEEEEE---CHH
Confidence            964  45555      8999999999 777754332         12222  88889999999888  788877   777


Q ss_pred             HHHHHHHHH------Hh-hc-cccccCCchHHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 012647          325 LAARVKSQL------KR-LA-RPMYSNPPVHGARIVANVVGNPALFDEWKA-EMEMMAGRIKNVRQKLFDSLSAKDKSGK  395 (459)
Q Consensus       325 ~~~~~~~~~------~~-~~-~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~  395 (459)
                      .++++....      .. .. .....+++.....+....|+   +..  .+ .++++.++++++.+++++.|+ ++|+  
T Consensus       212 ~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~---~i~--~~gG~e~i~~r~~~l~~~l~~~l~-~~~~--  283 (360)
T PRK05355        212 LLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFK---WLK--EQGGVAAMEKRNQEKAALLYDAID-SSDF--  283 (360)
T ss_pred             HHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHH---HHH--HccCHHHHHHHHHHHHHHHHHHHH-hCCC--
Confidence            655532210      00 11 11223444544444433332   110  22 368899999999999999999 8873  


Q ss_pred             CcccccC---Cc-ceeeec--CC-C-HHHHHHHHhcccEEEcCC----C--cEEEccC-ChhhHHHHHHHHHHHHhh
Q 012647          396 DWSFILR---QI-GMFSFT--GL-N-KAQSDNMTNKWHVYMTKD----G--RISLAGL-SLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       396 ~~~~~~~---~~-g~f~~~--~l-~-~~~~~~ll~~~gI~v~~g----g--Ris~~~~-~~e~i~~~~~~l~~~~~~  457 (459)
                       +....+   .. ....+.  +. . .++...+.+ +|+.+.++    |  |+|+... +.|||++++++|++++++
T Consensus       284 -~~~~~~~~~rs~~v~sf~~~~~~~~~~~~~~~~~-~Gi~~~~~~~~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~  358 (360)
T PRK05355        284 -YRNPVAPEDRSRMNVPFTLADEELDKKFLAEAKA-AGLVGLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFERR  358 (360)
T ss_pred             -cccCCChhhcCCcEEEEEcCChHHHHHHHHHHHH-CCCcccCCCCccCcEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence             222111   11 223332  21 2 233344444 69988555    3  9998766 789999999999998764

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.70  E-value=3.1e-14  Score=143.10  Aligned_cols=336  Identities=15%  Similarity=0.082  Sum_probs=193.1

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...+|+..|..-..-++.  .|.|.+++.+.++......+ +.....++.+.+++....       .+.+.+  +++|+
T Consensus        52 G~~ylD~~~g~~~~~lGh~--~p~v~~ai~~q~~~~~~~~~-~~~~~~~la~~l~~~~p~-------~~~v~f--~~sGs  119 (428)
T PRK12389         52 GNKYIDYLAAYGPIITGHA--HPHITKAITEAAENGVLYGT-PTELEIEFAKMLKEAIPS-------LEKVRF--VNSGT  119 (428)
T ss_pred             CCEEEEccccccccccCCC--CHHHHHHHHHHHHhCCccCC-CCHHHHHHHHHHHHhCCC-------CcEEEE--eCCHH
Confidence            4578888877542233443  68899999888865432222 333334555555554311       357888  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh-hCCCCee--------eeee-ecCCC---CCCCHHHHHHHHHcCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWS--------EYRY-YDPKT---VGLDFEGMIADIKAAPG  228 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~G~~v~--------~v~~-~~~~~---~~~d~e~l~~~i~~~~~  228 (459)
                      +|++.+.++.+.+....+|+...-+|.+...... ..|....        .++. ..++.   .-.|++.+++.+...++
T Consensus       120 eA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~  199 (428)
T PRK12389        120 EAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGD  199 (428)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCC
Confidence            9999998887776655789998988877543222 2221100        0000 00000   01278889888875444


Q ss_pred             CcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc
Q 012647          229 GSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (459)
Q Consensus       229 ~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (459)
                      ....+++.....-.|.+ .+++.+++|.++|++||+++|.||+..++..+.    .... ...+..++++   +++|.++
T Consensus       200 ~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~----~~a~-~~~gv~PDiv---t~gK~lg  271 (428)
T PRK12389        200 EVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMY----GGAQ-DLLGVEPDLT---ALGKIIG  271 (428)
T ss_pred             cEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCc----chhh-HHhCCCCCee---eechhhc
Confidence            56666666667777865 467789999999999999999999988774320    1111 1223334543   7899998


Q ss_pred             cCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHH---HHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          308 LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVA---NVVGNPALFDEWKAEMEMMAGRIKNVRQKLF  384 (459)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~  384 (459)
                       .|+.+|.+++   +++..+.+...-......++ +.+.++..++.   ..+++++           ..++.+++-++|.
T Consensus       272 -gG~Pi~av~~---~~~i~~~~~~~~~~~~~~T~-~gnpl~~Aaala~L~~l~~~~-----------l~~~~~~~g~~l~  335 (428)
T PRK12389        272 -GGLPIGAYGG---RKDIMEQVAPLGPAYQAGTM-AGNPASMAAGIACLEVLQQEG-----------VYEKLDRLGAMLE  335 (428)
T ss_pred             -CCCceeEEeE---HHHHHhhhccCCCcccccCC-ccCHHHHHHHHHHHHHHhccc-----------HHHHHHHHHHHHH
Confidence             7899999865   77744443210001122233 23333333332   2333322           3344444555555


Q ss_pred             HHHhh---ccCCCCCcccccCCcceeee--cC--C---------C----HHHHHHHHhcccEEEcCCC----cEEEccCC
Q 012647          385 DSLSA---KDKSGKDWSFILRQIGMFSF--TG--L---------N----KAQSDNMTNKWHVYMTKDG----RISLAGLS  440 (459)
Q Consensus       385 ~~L~~---~~g~~~~~~~~~~~~g~f~~--~~--l---------~----~~~~~~ll~~~gI~v~~gg----Ris~~~~~  440 (459)
                      +.|++   +++..  ..+. ..+|++..  ..  .         +    ..+...+++ +||.+.+.+    .+++.. +
T Consensus       336 ~~L~~l~~~~~~~--~~v~-r~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~~~~~l~~-t  410 (428)
T PRK12389        336 EGILEAAEKHGIT--ITIN-RLKGALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLN-QGINLAPSKYEAWFLTTAH-T  410 (428)
T ss_pred             HHHHHHHHhCCCC--EEEE-ecCcEEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHH-CCcEeecCCCCCeeecCCC-C
Confidence            55540   23311  1111 22334321  11  0         1    123445555 699998865    344444 9


Q ss_pred             hhhHHHHHHHHHHHHhhc
Q 012647          441 LAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       441 ~e~i~~~~~~l~~~~~~~  458 (459)
                      +++++++++++.++++++
T Consensus       411 ~e~id~~~~~l~~~l~~~  428 (428)
T PRK12389        411 EEDIEETLEAVDRAFAQL  428 (428)
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            999999999999998763

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.70  E-value=2.1e-14  Score=143.66  Aligned_cols=158  Identities=17%  Similarity=0.125  Sum_probs=118.4

Q ss_pred             cccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchH----HHhhhCCCCe
Q 012647          126 EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK----NIFNDARVPW  201 (459)
Q Consensus       126 ~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~----~~~~~~G~~v  201 (459)
                      .-...+++.++++...       +..|++   .+|+.|+.++  +.+.+.+||+|+++...|....    ..++..|+++
T Consensus        69 pt~~~le~~la~l~g~-------~~~v~f---sSG~~Ai~~a--l~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v  136 (437)
T PRK05613         69 PTVEALENRIASLEGG-------VHAVAF---ASGQAAETAA--ILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEV  136 (437)
T ss_pred             hHHHHHHHHHHHHhCC-------CeEEEe---CCHHHHHHHH--HHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEE
Confidence            3457888889888643       244554   6666888876  4555789999999998988663    3456789999


Q ss_pred             eeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCC
Q 012647          202 SEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN  281 (459)
Q Consensus       202 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~  281 (459)
                      +.++.  .    .|++.+++++++   +++++++.++.||+|.+   .++++|+++|+++|+++|+|.++.. ... .  
T Consensus       137 ~~vd~--~----~d~e~l~~~l~~---~tk~V~~e~~~Np~~~v---~di~~I~~la~~~gi~livD~t~a~-g~~-~--  200 (437)
T PRK05613        137 TFVEN--P----DDPESWQAAVQP---NTKAFFGETFANPQADV---LDIPAVAEVAHRNQVPLIVDNTIAT-AAL-V--  200 (437)
T ss_pred             EEECC--C----CCHHHHHHhCCc---cCeEEEEECCCCCCCcc---cCHHHHHHHHHHcCCeEEEECCCcc-ccc-c--
Confidence            98872  2    278999999886   67778888999999988   7788999999999999999999533 211 0  


Q ss_pred             ChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012647          282 DASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (459)
Q Consensus       282 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (459)
                      .  .+     ..+.++++.|++|.++.+|.-+|.+++
T Consensus       201 ~--p~-----~~GaDivv~S~~K~l~G~gd~~gG~vv  230 (437)
T PRK05613        201 R--PL-----ELGADVVVASLTKFYTGNGSGLGGVLI  230 (437)
T ss_pred             C--hH-----HhCCCEEEeeccceecCCCcceeEEEE
Confidence            0  11     123578999999999877777788754

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.69  E-value=4.8e-15  Score=158.95  Aligned_cols=289  Identities=11%  Similarity=0.010  Sum_probs=189.6

Q ss_pred             HHHHHHHHHHHhcCCCCccccCceEEeecccch----hHHHHHHHHHHHhCC-CC----EEEEcCCCCcchHHHhhhCCC
Q 012647          129 AAFNKVTAELLFGADNSVLKEQRVATVQGLSGT----GSLRLAAALIERYFP-GA----KVLISSPTWGNHKNIFNDARV  199 (459)
Q Consensus       129 ~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt----~a~~l~~~~~~~~~~-gd----~Vlv~~p~y~~~~~~~~~~G~  199 (459)
                      .++|+.++++++        .++|.+  +.+++    .+++++++.+  +.+ ||    +|+++...+......+...|+
T Consensus       571 ~~~r~~la~i~g--------~~~v~f--~pnaga~ge~a~~~vi~~~--~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G~  638 (993)
T PLN02414        571 EDLGDLLCEITG--------FDSFSL--QPNAGAAGEYAGLMVIRAY--HLSRGDHHRNVCIIPVSAHGTNPASAAMCGM  638 (993)
T ss_pred             HHHHHHHHHHhC--------CCeEEE--cCCCcHHHHHHHHHHHHHH--HhccCCCCCCEEEeCCCcCccCHHHHHHCCC
Confidence            477777777753        277888  88777    7888874433  554 88    899999998888888888999


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~  279 (459)
                      +++.+|.+  +++.+|+++|++.+++..++++++++++|+|-+|..   +++++|+++|+++|+++++|.+ +..+....
T Consensus       639 ~vv~v~~d--~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e---~~I~eI~~iah~~Galv~vDgA-q~~a~~~l  712 (993)
T PLN02414        639 KIVVVGTD--AKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYE---EGIDEICDIIHDNGGQVYMDGA-NMNAQVGL  712 (993)
T ss_pred             EEEEeccC--CCCCcCHHHHHHHHhccCCCeEEEEEECCCcccccc---chHHHHHHHHHHcCCEEEEEec-CHHhccCc
Confidence            99999984  467899999999998644478899999999999999   8899999999999999999999 43332111


Q ss_pred             CCChhHHHHHHhcCCeEEEEEcCCcCcc----cCCCCcceEEEEeCChhHHHHHHHHHH-h----hc--cccccCC---c
Q 012647          280 DNDASSVRLFATRGMELLVAQSYSKNLG----LYAERIGAMNVVCSSSDLAARVKSQLK-R----LA--RPMYSNP---P  345 (459)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~----~~G~RiG~~~~v~~~~~~~~~~~~~~~-~----~~--~~~~~~~---~  345 (459)
                      .  .      ....+-+++++|.+|.|+    ..|-.+|++.+   .+.+...+..... .    ..  ...+.+.   .
T Consensus       713 ~--~------p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~---~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a  781 (993)
T PLN02414        713 T--S------PGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGV---KKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAA  781 (993)
T ss_pred             C--C------ccccCCCEEEecCCccCCcCcccCCCCeeeEEE---chhhcccCCCCccccCCCcccccCCCCcCCccch
Confidence            0  0      123456788999999664    22344888865   5553222221110 0    00  0001111   1


Q ss_pred             hH----HHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCcccccCCccee---e--ec-----
Q 012647          346 VH----GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK-DKSGKDWSFILRQIGMF---S--FT-----  410 (459)
Q Consensus       346 ~~----~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~g~~~~~~~~~~~~g~f---~--~~-----  410 (459)
                      ..    ...++..++..-+     .+.+++..++...+.+++.+.|. + ++    +.+..+.+.+|   +  +.     
T Consensus       782 ~~g~al~l~~A~~yi~~lG-----~~Gl~~~a~~a~~nAnYl~~rL~-~~~~----~~~~~~~~~~~hEfv~~~~~l~~~  851 (993)
T PLN02414        782 PWGSALILPISYTYIAMMG-----SEGLTDASKIAILNANYMAKRLE-GHYP----VLFRGKNGTCAHEFIIDLRPFKNT  851 (993)
T ss_pred             hhhhHHHHHHHHHHHHHHC-----HhHHHHHHHHHHHHHHHHHHHHH-hhCC----ccccCCCCCeeeeEEEeccccccc
Confidence            11    1112222221101     24577888888889999999998 5 22    23333333221   1  11     


Q ss_pred             -CCC-HHHHHHHHhcccEEEc----CC--C-cEEEccC-ChhhHHHHHHHHHHHHhh
Q 012647          411 -GLN-KAQSDNMTNKWHVYMT----KD--G-RISLAGL-SLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       411 -~l~-~~~~~~ll~~~gI~v~----~g--g-Ris~~~~-~~e~i~~~~~~l~~~~~~  457 (459)
                       +.+ .+..++|++ +||...    |.  . ||+.+-. +++|+|++++++..+..+
T Consensus       852 ~g~~~~di~krL~d-~Gihapt~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~e  907 (993)
T PLN02414        852 AGIEPEDVAKRLMD-YGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREE  907 (993)
T ss_pred             cCCCHHHHHHHHHH-cCcEEeeeccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHH
Confidence             133 455778874 688642    22  2 8887654 889999999999887765

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.69  E-value=2.2e-14  Score=145.01  Aligned_cols=325  Identities=15%  Similarity=0.132  Sum_probs=187.0

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC------CCcccHHHHHH----HHHHHhcCCCCccccCce
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL------PIEGLAAFNKV----TAELLFGADNSVLKEQRV  152 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~------~~~g~~~lr~a----ia~~l~~~~~~~~~~~~i  152 (459)
                      .+.|+|-..++       .+++.+++++...+.+....+|+      -.....++.+.    .++.+...      ...+
T Consensus        34 ~~~l~liasen-------~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~------~~~~  100 (475)
T PLN03226         34 WKGLELIASEN-------FTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLD------PEKW  100 (475)
T ss_pred             HcCeeEecCCc-------cCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCC------ccee
Confidence            46788887765       23788999998887332222322      22233444331    22222222      3334


Q ss_pred             -EEeecccchhHHHHHHHHHHHhCCCCEEEEcCC---CCcchHHHhhh---CCCCee----eeeeecCCCCCCCHHHHHH
Q 012647          153 -ATVQGLSGTGSLRLAAALIERYFPGAKVLISSP---TWGNHKNIFND---ARVPWS----EYRYYDPKTVGLDFEGMIA  221 (459)
Q Consensus       153 -~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p---~y~~~~~~~~~---~G~~v~----~v~~~~~~~~~~d~e~l~~  221 (459)
                       +-+|..+|+.++..+  +.+.+.|||+|+..+.   +|..+......   .+....    +++++ .+++.+|++++++
T Consensus       101 ~~nv~~~SG~~AN~av--~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~-~~~g~iD~d~Le~  177 (475)
T PLN03226        101 GVNVQPLSGSPANFAV--YTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLD-ESTGLIDYDKLEK  177 (475)
T ss_pred             EEecCcCchHHHHHHH--HHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeec-CCCCCcCHHHHHH
Confidence             335567888888877  5666889999999553   44444333221   112111    33443 4567899999999


Q ss_pred             HHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEc
Q 012647          222 DIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS  301 (459)
Q Consensus       222 ~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S  301 (459)
                      .+...  +++++++ ..++ +|..   .++++|.++|+++|.++++|+++. ++.-..+.....    .  ...+++++|
T Consensus       178 ~l~~~--~pklIv~-~~S~-~s~~---~D~a~i~~ia~~~ga~LlvD~AH~-~Gli~~~~~~~p----~--~~~Div~~t  243 (475)
T PLN03226        178 KAMLF--RPKLIIA-GASA-YPRD---WDYARMRKIADKVGALLMCDMAHI-SGLVAAQEAASP----F--EYCDVVTTT  243 (475)
T ss_pred             HHhhc--CCeEEEE-ecCc-CCCc---cCHHHHHHHHHHcCCEEEEEchhh-hCcccCCCCCCC----C--CCCeEEEec
Confidence            98753  4455554 2333 6666   567789999999999999999943 332111110000    1  135688999


Q ss_pred             CCcCc-ccCCCCcceEEEEeCChhHHH----------HHHHHHHhhccccccCCchHHHHHH-HH---HhCChhhHHHHH
Q 012647          302 YSKNL-GLYAERIGAMNVVCSSSDLAA----------RVKSQLKRLARPMYSNPPVHGARIV-AN---VVGNPALFDEWK  366 (459)
Q Consensus       302 ~SK~~-~~~G~RiG~~~~v~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~L~~~~~~~~~~  366 (459)
                      ++|++ |+.|   |++++   +++..+          .+.+.........+.+.+...+.++ ..   .+.+.       
T Consensus       244 ~hK~L~GP~G---g~I~~---~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~-------  310 (475)
T PLN03226        244 THKSLRGPRG---GMIFF---RKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTP-------  310 (475)
T ss_pred             CcccccCCCc---eEEEE---chhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCc-------
Confidence            99998 6555   67644   443221          1111111111111222222222222 22   22222       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC--Ccceeee----cCCCHHHHHHHHhcccEEEcCC---------
Q 012647          367 AEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR--QIGMFSF----TGLNKAQSDNMTNKWHVYMTKD---------  431 (459)
Q Consensus       367 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~--~~g~f~~----~~l~~~~~~~ll~~~gI~v~~g---------  431 (459)
                       ..++++++..++.++|.+.|. +.|    ++++.+  +..+.++    .+++...++..|++.||.+..+         
T Consensus       311 -~~~~~~~~~~~na~~L~~~L~-~~G----~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~  384 (475)
T PLN03226        311 -EFKAYQKQVKANAAALANRLM-SKG----YKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSAL  384 (475)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHH-hCC----CEEEcCCCCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCcccC
Confidence             235678888999999999999 777    455542  2222221    2456777888888889987542         


Q ss_pred             ---C-cE-----EEccCChhhHHHHHHHHHHHHh
Q 012647          432 ---G-RI-----SLAGLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       432 ---g-Ri-----s~~~~~~e~i~~~~~~l~~~~~  456 (459)
                         | |+     +-.+.++++++++.+.|.++++
T Consensus       385 ~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~  418 (475)
T PLN03226        385 VPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVT  418 (475)
T ss_pred             CCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence               3 54     3334588999999999999887

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.69  E-value=2.2e-14  Score=144.62  Aligned_cols=340  Identities=15%  Similarity=0.077  Sum_probs=192.7

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      +...+|+..|.-...-++.  +|.|.+++.+.++... ...|.+.....+|.+.+++.....      .+.+.+  +++|
T Consensus        81 G~~ylD~~~g~~~~~lGH~--~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~lae~L~~~~p~~------~~~v~f--~~SG  150 (459)
T PRK11522         81 GQEFIDCLGGFGIFNVGHR--NPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGK------LKYSFF--CNSG  150 (459)
T ss_pred             CCEEEECCcCHHhhhcCCC--CHHHHHHHHHHHhhCcccccccCCHHHHHHHHHHHHhCCCC------CCEEEE--eCCc
Confidence            3567888777432223443  7889999988876421 122333333344555555543211      257888  9999


Q ss_pred             hhHHHHHHHHHHHhCC--C-CEEEEcCCCCcchHHHhh-hCCCCeee---eeeecC--CCCCCCHHHHHHHHHc---CCC
Q 012647          161 TGSLRLAAALIERYFP--G-AKVLISSPTWGNHKNIFN-DARVPWSE---YRYYDP--KTVGLDFEGMIADIKA---APG  228 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~--g-d~Vlv~~p~y~~~~~~~~-~~G~~v~~---v~~~~~--~~~~~d~e~l~~~i~~---~~~  228 (459)
                      ++|++.+.++.+.+..  | .+|+....+|.+...... ..|-....   .|..+.  .-...|.+.+++.++.   .++
T Consensus       151 sEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~  230 (459)
T PRK11522        151 TESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGD  230 (459)
T ss_pred             hHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCC
Confidence            9999999888776653  3 478888888876543222 22211100   111000  0001267778877753   223


Q ss_pred             CcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc
Q 012647          229 GSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (459)
Q Consensus       229 ~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (459)
                      +...+|+.....-.|.+ .+++.++++.++|++||+++|+||+..+++-.+   ..+.... .+..++++   +++|.+|
T Consensus       231 ~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG---~~~a~e~-~gv~PDiv---t~gK~lg  303 (459)
T PRK11522        231 DVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTG---KMFACEH-ENVQPDIL---CLAKALG  303 (459)
T ss_pred             cEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccc---hhhhhhc-cCCCCCEE---Eechhhh
Confidence            45566666666666775 567779999999999999999999987765321   2223222 12234443   7899998


Q ss_pred             cCC-CCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHH---HHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012647          308 LYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVA---NVVGNPALFDEWKAEMEMMAGRIKNVRQKL  383 (459)
Q Consensus       308 ~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l  383 (459)
                       .| +.+|.+++   .++..+.+... ......++ +.+.++..++.   ..++++           ...++.+++-++|
T Consensus       304 -gG~~Pigav~~---~~~i~~~~~~~-~~~~~~T~-~gnp~~~Aaala~L~~i~~~-----------~l~~~~~~~g~~l  366 (459)
T PRK11522        304 -GGVMPIGATIA---TEEVFSVLFDN-PFLHTTTF-GGNPLACAAALATINVLLEQ-----------NLPAQAEQKGDYL  366 (459)
T ss_pred             -CCCccceeEEE---cHHHHHHhccC-CcccCCCC-CCCHHHHHHHHHHHHHHhcc-----------hHHHHHHHHHHHH
Confidence             67 58999866   66644433211 11112223 22333333332   233322           3345666666667


Q ss_pred             HHHHhhccC--CCCCcccccCCcceeeecCC--C---HHHHHHHHhcccEEEcCC---C---cEEEcc-CChhhHHHHHH
Q 012647          384 FDSLSAKDK--SGKDWSFILRQIGMFSFTGL--N---KAQSDNMTNKWHVYMTKD---G---RISLAG-LSLAKCEYLAD  449 (459)
Q Consensus       384 ~~~L~~~~g--~~~~~~~~~~~~g~f~~~~l--~---~~~~~~ll~~~gI~v~~g---g---Ris~~~-~~~e~i~~~~~  449 (459)
                      .+.|+ ++.  .|..+..+... |.++-+.+  +   ..+.+.+++ +||.+.+.   +   ||..+. .++++++++++
T Consensus       367 ~~~L~-~l~~~~~~~i~~VrG~-Gl~~giel~~~~~~~~i~~~l~~-~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~l~  443 (459)
T PRK11522        367 LDGFR-QLAREYPDLVQEARGK-GMLMAIEFVDNEIGYNFASEMFR-QRVLVAGTLNNAKTIRIEPPLTLTIEQCEQVLK  443 (459)
T ss_pred             HHHHH-HHHHhCCCceeeEEec-eeEEEEEecCchHHHHHHHHHHH-CCeEEEecCCCCCEEEEECCccCCHHHHHHHHH
Confidence            76666 542  11101112223 33322222  1   234556666 69999764   2   665543 39999999999


Q ss_pred             HHHHHHhhc
Q 012647          450 AIIDSYHNV  458 (459)
Q Consensus       450 ~l~~~~~~~  458 (459)
                      +|.++++++
T Consensus       444 ~l~~~l~~~  452 (459)
T PRK11522        444 AARKALAAM  452 (459)
T ss_pred             HHHHHHHHH
Confidence            999998764

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.69  E-value=2.7e-14  Score=143.07  Aligned_cols=330  Identities=13%  Similarity=0.058  Sum_probs=189.0

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC-CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      +...+|+..|.-...-++.  +|.|.+++.+.++.. ....|.......++.+.+++.....      .+.+.+  +++|
T Consensus        74 G~~ylD~~~g~~~~~lGh~--hp~v~~Av~~ql~~l~~~~~~~~~~~~~~lAe~L~~~~p~~------~~~v~f--~~SG  143 (442)
T TIGR03372        74 GNEFIDCLGGFGIFNVGHR--NPNVIAAVENQLAKQPLHSQELLDPLRALLAKTLAALTPGK------LKYSFF--CNSG  143 (442)
T ss_pred             CCEEEECCccHHhhhcCCC--CHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHhCCCC------cCEEEE--eCCc
Confidence            4567888777332222443  788999998877542 1123333434445555555543211      256888  9999


Q ss_pred             hhHHHHHHHHHHHhC---CCCEEEEcCCCCcchHHHhhhC-CC------------CeeeeeeecCCCCCCCHHHHHHHHH
Q 012647          161 TGSLRLAAALIERYF---PGAKVLISSPTWGNHKNIFNDA-RV------------PWSEYRYYDPKTVGLDFEGMIADIK  224 (459)
Q Consensus       161 t~a~~l~~~~~~~~~---~gd~Vlv~~p~y~~~~~~~~~~-G~------------~v~~v~~~~~~~~~~d~e~l~~~i~  224 (459)
                      ++|++.+.++.+...   ...+|+..+.+|.+........ |-            .+..+|.       .|.+.+++.++
T Consensus       144 sEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~-------~d~~~~~~~l~  216 (442)
T TIGR03372       144 TESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAF-------GDIEAMLKALN  216 (442)
T ss_pred             hHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCC-------CCHHHHHHHHH
Confidence            999999988877663   3467999998887654322211 11            1122222       25677777775


Q ss_pred             c---CCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEE
Q 012647          225 A---APGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (459)
Q Consensus       225 ~---~~~~~~~ii~~~p~NPTG~~~-s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  300 (459)
                      .   .+.+...+|+......-|... +++-++++.++|++||+++|.||++.+++-.+   ..+....+ +-.++++   
T Consensus       217 ~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG---~~~a~e~~-gv~PDiv---  289 (442)
T TIGR03372       217 ECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTG---KMFACEHE-GVQPDIL---  289 (442)
T ss_pred             HHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccc---cchhhhhc-CCCCCee---
Confidence            3   234566666666666667654 67779999999999999999999987765321   22333222 2234444   


Q ss_pred             cCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHH---hCChhhHHHHHHHHHHHHHHH
Q 012647          301 SYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV---VGNPALFDEWKAEMEMMAGRI  376 (459)
Q Consensus       301 S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---L~~~~~~~~~~~~~~~~~~~~  376 (459)
                      +++|.+| .| +.+|.+++   +++..+.+... ......++ +.+.++..++...   +++.           ...++.
T Consensus       290 t~gK~lg-~G~~Pigavv~---~~~i~~~~~~~-~~~~~~T~-~gnp~~~Aaa~a~L~~i~~~-----------~l~~~~  352 (442)
T TIGR03372       290 CLAKALG-GGVMPIGATIA---TEAVFSVLFDN-PFLHTTTF-GGNPLACAAALATINELLEK-----------NLPAQA  352 (442)
T ss_pred             eehhhhc-CCcccceEEEe---cHHHHHhhhcc-CccccCCC-CCCHHHHHHHHHHHHHHHhc-----------cHHHHH
Confidence            4899998 78 68999865   66744443211 00112223 2233333333333   3222           223444


Q ss_pred             HHHHHHHHHHHhhccC--CCCCcccccCCcceeeecCC--C---HHHHHHHHhcccEEEcCC---C---cEEEcc-CChh
Q 012647          377 KNVRQKLFDSLSAKDK--SGKDWSFILRQIGMFSFTGL--N---KAQSDNMTNKWHVYMTKD---G---RISLAG-LSLA  442 (459)
Q Consensus       377 ~~~~~~l~~~L~~~~g--~~~~~~~~~~~~g~f~~~~l--~---~~~~~~ll~~~gI~v~~g---g---Ris~~~-~~~e  442 (459)
                      ++.-+++.+.|+ ++.  .|..+.-+... |.++-+.+  +   ..+.+.+++ +||.+.+.   +   ||..+- .+++
T Consensus       353 ~~~G~~l~~~L~-~l~~~~~~~i~~vRG~-Gl~~giel~~~~~~~~i~~~l~~-~Gvl~~~~~~~~~~lr~~Ppl~~t~~  429 (442)
T TIGR03372       353 AIKGDFLLDGFQ-QLAAEYPDLIIEARGK-GLLMAIEFRDNEIGYAFAKELFQ-QNILVAGTLNNAKSIRIEPPLTITIE  429 (442)
T ss_pred             HHHHHHHHHHHH-HHHHhCCCceEEEecc-eEEEEEEeCChHHHHHHHHHHHH-CCcEEeecCCCCCEEEEECCcccCHH
Confidence            555555655555 431  11111122233 33333322  1   234556666 59998653   2   666442 3899


Q ss_pred             hHHHHHHHHHHHH
Q 012647          443 KCEYLADAIIDSY  455 (459)
Q Consensus       443 ~i~~~~~~l~~~~  455 (459)
                      +++++++++.+++
T Consensus       430 ~id~~~~~l~~~~  442 (442)
T TIGR03372       430 QCALVIKAAKDAL  442 (442)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999998764

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.68  E-value=3.9e-14  Score=139.20  Aligned_cols=213  Identities=11%  Similarity=0.041  Sum_probs=144.9

Q ss_pred             cccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh----hhCCCCe
Q 012647          126 EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVPW  201 (459)
Q Consensus       126 ~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~G~~v  201 (459)
                      .-...|.+.+|++-.+        +..++  +++|+.|+..+  +++.+.+||+|+++...|.+....+    +..|+++
T Consensus        62 Pt~~~le~~la~LEg~--------~~a~~--~~SGmaAi~~~--~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v  129 (395)
T PRK08114         62 LTHFSLQEAMCELEGG--------AGCAL--YPCGAAAVANA--ILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTT  129 (395)
T ss_pred             hhHHHHHHHHHHHhCC--------CeEEE--EhHHHHHHHHH--HHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEE
Confidence            3456788888887322        34555  78899999988  5566889999999999987666544    5679888


Q ss_pred             eeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc--CCeeEEeccCCCCCCCCC
Q 012647          202 SEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK--NHIPFFDVAYQGFASGSL  279 (459)
Q Consensus       202 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~--~~~ii~Deay~~~~~~~~  279 (459)
                      ..++.       .|.+.+++++++   +++++++.+|.||||.+   .++++|+++|+++  |+++++|.++..-..  +
T Consensus       130 ~~vd~-------~d~~~l~~~l~~---~TrlV~~EtpsNp~~~v---~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~--~  194 (395)
T PRK08114        130 TWFDP-------LIGADIAKLIQP---NTKVVFLESPGSITMEV---HDVPAIVAAVRSVNPDAVIMIDNTWAAGVL--F  194 (395)
T ss_pred             EEECC-------CCHHHHHHhcCC---CceEEEEECCCCCCCEe---ecHHHHHHHHHHhCCCCEEEEECCCccccc--c
Confidence            88764       367889999876   78999999999999999   7888999999998  499999999654221  1


Q ss_pred             CCChhHHHHHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCC
Q 012647          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN  358 (459)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  358 (459)
                      +    .     ...+-++++.|.+|.++-+| .-.|.+   +.+++..+.+.....    ......+...+..+..-|+ 
T Consensus       195 ~----p-----l~~GaDivv~S~tKyl~Ghsdv~~G~v---~~~~~~~~~l~~~~~----~~G~~~~p~~a~l~~rgl~-  257 (395)
T PRK08114        195 K----A-----LDFGIDISIQAGTKYLVGHSDAMIGTA---VANARCWEQLRENSY----LMGQMVDADTAYMTSRGLR-  257 (395)
T ss_pred             C----H-----HHcCCcEEEEcCcccccCCCcceeEEE---EcCHHHHHHHHHHHH----hccCCCCHHHHHHHHcCCC-
Confidence            1    1     12346799999999876565 445543   335654444332211    1111333333333322222 


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                               .+.-+.++..++...+.+.|+ +.+
T Consensus       258 ---------TL~lR~~~~~~na~~va~~L~-~hp  281 (395)
T PRK08114        258 ---------TLGVRLRQHEESSLKVAEWLA-EHP  281 (395)
T ss_pred             ---------cHHHHHHHHHHHHHHHHHHHH-cCC
Confidence                     244556677777788888887 653

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.68  E-value=1.8e-14  Score=141.62  Aligned_cols=310  Identities=11%  Similarity=0.031  Sum_probs=184.7

Q ss_pred             CCccCcHHHHHHHHHHhhcCC-CCCCCC--CcccHHHHHHHHHHHhcCCCCccccCceEEeec-ccchhHHHHHHHHHHH
Q 012647           98 LQPYVLDVVKKAENLMLERGE-NKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQG-LSGTGSLRLAAALIER  173 (459)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~-~~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t-~ggt~a~~l~~~~~~~  173 (459)
                      |+..+++.|++++......-. ...+.+  ..-+.+.|+.++++++...     +.+|++  + .+||.+++.+  +.+.
T Consensus        10 GP~~~~~~v~~a~~~~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~-----~~~v~f--~~gs~T~a~~~~--~~~l   80 (361)
T TIGR01366        10 GPSKVRLEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELFSLPD-----GYEVIL--GNGGATAFWDAA--TFGL   80 (361)
T ss_pred             CCcCCCHHHHHHHHhcCccccccCcCChHHHHHHHHHHHHHHHHhCCCC-----CceEEE--ECCchhHHHHHH--HHhc
Confidence            445578999999875310000 012222  3456788999999976421     346776  6 5599999998  4433


Q ss_pred             hCCCCEEEEcCCCCc-chHHHhhhC--CCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHH
Q 012647          174 YFPGAKVLISSPTWG-NHKNIFNDA--RVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQ  250 (459)
Q Consensus       174 ~~~gd~Vlv~~p~y~-~~~~~~~~~--G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~  250 (459)
                      +.+ +..++..-.|. .+...++.+  +.++..++..  ++..++.+     +.   ++++++.+++.+|.||...+   
T Consensus        81 ~~~-~~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~-----~~---~~~~lV~~~h~et~tG~~~p---  146 (361)
T TIGR01366        81 IEK-KSLHLSFGEFSSKFAKAVKLAPWLGEPIIVTAD--PGSAPEPQ-----AD---PGVDVIAWAHNETSTGVAVP---  146 (361)
T ss_pred             ccc-cccEEecCHHHHHHHHHHHhhhccCCceEEecC--CCCCCCCc-----cC---CCCCEEEEcccCCccceecc---
Confidence            432 33334343443 344444442  3377777763  23334431     22   37888989999999999955   


Q ss_pred             HHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHH
Q 012647          251 WEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVK  330 (459)
Q Consensus       251 l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~  330 (459)
                      +++|   ++++|+++++|.+ +.++....+.         +.  .++++.|..|.+|++|- ++.+++   +++.++++.
T Consensus       147 i~~I---~~~~g~~~iVDav-qs~g~~~idv---------~~--~D~~~~s~~K~lg~~~G-l~~~~~---s~~~~~~~~  207 (361)
T TIGR01366       147 VRRP---EGSDDALVVIDAT-SGAGGLPVDI---------AE--TDVYYFAPQKNFASDGG-LWLAIM---SPAALERIE  207 (361)
T ss_pred             cccc---cccCCCeEEEEcC-ccccCCCCCH---------HH--CCEEEEEchhhcCCCCc-eEEEEE---CHHHHhhhh
Confidence            4455   4789999999999 7777643321         11  36788999999998752 455444   666554433


Q ss_pred             HH----------H--H----hhccccccCCchHHHH-HHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          331 SQ----------L--K----RLARPMYSNPPVHGAR-IVANVVGNPALFDEWKA-EMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       331 ~~----------~--~----~~~~~~~~~~~~~~~~-~~~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                      ..          +  .    ......+.+.+.+... +....++   +..  ++ .++.+.++++++.+++++.|. +++
T Consensus       208 ~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~---~l~--~~gg~e~~~~r~~~l~~~l~~~l~-~~~  281 (361)
T TIGR01366       208 AIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQID---WMN--GNGGLDWAVARTADSSSRLYSWAQ-ERP  281 (361)
T ss_pred             cccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHH---HHH--HccCHHHHHHHHHHHHHHHHHHHH-hCC
Confidence            11          0  0    0000112233333322 2222221   110  11 256777999999999999999 876


Q ss_pred             CCCCccccc-C------Ccceeeec-CCCHHHHHHHHhcccEEEcCC-----C---cEEEccC-ChhhHHHHHHHHHHHH
Q 012647          393 SGKDWSFIL-R------QIGMFSFT-GLNKAQSDNMTNKWHVYMTKD-----G---RISLAGL-SLAKCEYLADAIIDSY  455 (459)
Q Consensus       393 ~~~~~~~~~-~------~~g~f~~~-~l~~~~~~~ll~~~gI~v~~g-----g---Ris~~~~-~~e~i~~~~~~l~~~~  455 (459)
                      .   ++... .      ..+.+.|. +++.+.+...++++||.+.++     +   |||+.+. +++++++++++|++++
T Consensus       282 ~---~~~~~~~~~~~s~~v~~v~~~~g~~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~  358 (361)
T TIGR01366       282 Y---ATPFVTDPGKRSQVVGTIDFVDDIDAATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDWVV  358 (361)
T ss_pred             C---cccCCCChhhcccceEEEECCCccCHHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence            2   22221 1      11334443 456666554445579999776     1   9998776 8899999999999998


Q ss_pred             hhc
Q 012647          456 HNV  458 (459)
Q Consensus       456 ~~~  458 (459)
                      +++
T Consensus       359 ~~~  361 (361)
T TIGR01366       359 ERL  361 (361)
T ss_pred             hhC
Confidence            875

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.67  E-value=2.8e-14  Score=139.92  Aligned_cols=221  Identities=17%  Similarity=0.173  Sum_probs=146.0

Q ss_pred             CCCCC--CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh--
Q 012647          120 KEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN--  195 (459)
Q Consensus       120 ~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~--  195 (459)
                      +.|+-  ..-...+.+.++++-.+        +..++  +++|..|+..+  +++.+.+||+|+++...|.+-...++  
T Consensus        47 ~~Y~R~gnPt~~~le~~la~Le~g--------~~a~~--~~SGmaAi~~~--l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~  114 (386)
T PF01053_consen   47 YIYSRYGNPTVRALEQRLAALEGG--------EDALL--FSSGMAAISAA--LLALLKPGDHIVASDDLYGGTYRLLEEL  114 (386)
T ss_dssp             CSBTTTC-HHHHHHHHHHHHHHT---------SEEEE--ESSHHHHHHHH--HHHHS-TTBEEEEESSSSHHHHHHHHHC
T ss_pred             cceeccccccHHHHHHHHHHhhcc--------cceee--ccchHHHHHHH--HHhhcccCCceEecCCccCcchhhhhhh
Confidence            44542  33446778888887533        45666  79999999887  66678899999999999987766555  


Q ss_pred             --hCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC-CeeEEeccCC
Q 012647          196 --DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN-HIPFFDVAYQ  272 (459)
Q Consensus       196 --~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~-~~ii~Deay~  272 (459)
                        ..|.++..++.       -|++++++++++   ++++|++.+|.||+..+   .++++|+++|+++| +++++|+.+.
T Consensus       115 l~~~gv~v~~~d~-------~d~~~l~~~l~~---~t~~v~~EspsNP~l~v---~Dl~~i~~~a~~~g~~~~vVDnT~a  181 (386)
T PF01053_consen  115 LPRFGVEVTFVDP-------TDLEALEAALRP---NTKLVFLESPSNPTLEV---PDLEAIAKLAKEHGDILVVVDNTFA  181 (386)
T ss_dssp             HHHTTSEEEEEST-------TSHHHHHHHHCT---TEEEEEEESSBTTTTB------HHHHHHHHHHTTT-EEEEECTTT
T ss_pred             hcccCcEEEEeCc-------hhHHHHHhhccc---cceEEEEEcCCCccccc---ccHHHHHHHHHHhCCceEEeecccc
Confidence              46888777743       378999999987   89999999999999888   88999999999998 9999999976


Q ss_pred             CCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCC-hhHHHHHHHHHHhhccccccCCchHHHHH
Q 012647          273 GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS-SDLAARVKSQLKRLARPMYSNPPVHGARI  351 (459)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (459)
                      ....-    +  ++     ..+-++++.|.+|.++-.|--+|.+++ +.+ ++..+++......    .....+...+..
T Consensus       182 tp~~~----~--pL-----~~GaDivv~S~TKyl~Ghsdv~~G~vv-~~~~~~~~~~l~~~~~~----~G~~~~p~da~l  245 (386)
T PF01053_consen  182 TPYNQ----N--PL-----ELGADIVVHSATKYLSGHSDVMGGAVV-VNGSSELYDRLREFRRL----LGATLSPFDAWL  245 (386)
T ss_dssp             HTTTC-------GG-----GGT-SEEEEETTTTTTTSSSE-EEEEE-ESSHHHHHHHHHHHHHH----HT-B--HHHHHH
T ss_pred             ceeee----c--cC-----cCCceEEEeeccccccCCcceeeEEEE-ECchhhhhhhhcchhhh----cCccchHHHHHH
Confidence            54321    1  11     123578899999999756655566543 344 5655554433221    121233333333


Q ss_pred             HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          352 VANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       352 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                      +..-|+.          +..+.++..++...+.+.|+ +.+
T Consensus       246 l~rgl~T----------l~~R~~~~~~nA~~lA~~L~-~hp  275 (386)
T PF01053_consen  246 LLRGLRT----------LPLRMERQNENAEALAEFLE-EHP  275 (386)
T ss_dssp             HHHHHTT----------HHHHHHHHHHHHHHHHHHHH-TST
T ss_pred             HhcCCCc----------HHHHHHHHHHHHHHHHHHHH-hCC
Confidence            3333332          34556666777888888888 653

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK04311 selenocysteine synthase; Provisional

Probab=99.67  E-value=8.3e-14  Score=139.76  Aligned_cols=339  Identities=16%  Similarity=0.092  Sum_probs=202.2

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCC-----CcccHHHHHHHHHHHhcCCCCccccCceEEeec
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP-----IEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~-----~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (459)
                      ..+||.+.-.++++.+.+++++.+.+++.+++.......|.-     ..-+..+++.++++...        ++.++  +
T Consensus        79 r~vinatg~v~~tNlg~s~l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Ga--------e~a~v--v  148 (464)
T PRK04311         79 RPVINATGVVLHTNLGRALLSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTGA--------EDALV--V  148 (464)
T ss_pred             cceecCCccEEeccCCCCCCCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhCC--------CeEEE--E
Confidence            368887765666777777789999999998875432122221     11236888999988643        34556  7


Q ss_pred             ccchhHHHHHHHHHHHhCCCCEEEEcCCCCcc------hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcE
Q 012647          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGN------HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (459)
Q Consensus       158 ~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~------~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~  231 (459)
                      ++++.|+.++   +..+.+||+|++++..+..      ....++..|++++.++.+    ...+++++++++++   +++
T Consensus       149 ~sgtaAl~l~---l~~l~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~----~~t~~~dle~aI~~---~Tk  218 (464)
T PRK04311        149 NNNAAAVLLA---LNALAAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTT----NRTHLRDYEQAINE---NTA  218 (464)
T ss_pred             CCHHHHHHHH---HHHhCCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCC----CCCCHHHHHHhcCc---cCe
Confidence            8888999887   3457899999999864331      234567889999998763    23578999999986   788


Q ss_pred             EEEeCCCCCCC--CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCC----CCCCCCChhHHHHHHhcCCeEEEEEcCCcC
Q 012647          232 ILLHGCAHNPT--GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFA----SGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (459)
Q Consensus       232 ~ii~~~p~NPT--G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (459)
                      ++++.+++||+  |.. ...++++|+++|++||+++++|.+...+.    ++ .. ..+.+.... ..+.+++++|.+|.
T Consensus       219 lV~~vh~sN~~i~G~~-~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~g-l~-~~p~~~~~l-~~GaDiv~fSg~K~  294 (464)
T PRK04311        219 LLLKVHTSNYRIEGFT-KEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYG-LP-DEPTVQELL-AAGVDLVTFSGDKL  294 (464)
T ss_pred             EEEEEcCCCccccccC-CcCCHHHHHHHHHHcCCeEEEECCCcccccchhcc-CC-CCCchhhHH-hcCCcEEEecCccc
Confidence            99889999994  432 12578899999999999999999633321    10 00 011111111 23567999999999


Q ss_pred             cccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHH-HH-HHHhCChhhHHHHH-----HHHHHHHHHHHH
Q 012647          306 LGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGAR-IV-ANVVGNPALFDEWK-----AEMEMMAGRIKN  378 (459)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~L~~~~~~~~~~-----~~~~~~~~~~~~  378 (459)
                      +|-|  ..|++++   .++.++++...  .+.+.....-..++.. +. ..++...+   .|+     +-+....++.++
T Consensus       295 LgGp--~~G~i~g---~~~li~~l~~~--~~~r~lr~dk~~l~~l~~~l~~~~~~~~---~~~~i~~l~~l~~~~~~~~~  364 (464)
T PRK04311        295 LGGP--QAGIIVG---KKELIARLKKH--PLKRALRVDKLTLAALEATLRLYLDPEK---LAEEIPTLRLLTRSPEELRA  364 (464)
T ss_pred             ccCC--ceEEEEE---cHHHHHHHhhc--hhHHHHhcchHHHHHHHHHHHHHhChhh---hhhhCcHHHHhcCCHHHHHH
Confidence            8744  3788765   77765554421  1111111111111111 11 11221110   111     123334466666


Q ss_pred             HHHHHHHHHhhccCCCC-CcccccC----Ccc------eeee---c---CCCHHHHHHHHhccc--EEEcC-CC--cEEE
Q 012647          379 VRQKLFDSLSAKDKSGK-DWSFILR----QIG------MFSF---T---GLNKAQSDNMTNKWH--VYMTK-DG--RISL  436 (459)
Q Consensus       379 ~~~~l~~~L~~~~g~~~-~~~~~~~----~~g------~f~~---~---~l~~~~~~~ll~~~g--I~v~~-gg--Ris~  436 (459)
                      +.+.+.+.|+ ....++ ...+...    .||      +..|   +   +++.+.++..+++..  |..+- .+  .+.+
T Consensus       365 ~A~~la~~L~-~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~~~~~~~l~~~lr~~~~~i~~r~~~~~~~ld~  443 (464)
T PRK04311        365 RAERLAAALK-AALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPKDRSLEALAARLRLLPPPVIGRIEDGRLLLDL  443 (464)
T ss_pred             HHHHHHHHHH-hccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCEEEEEe
Confidence            7788888887 542111 0122211    111      1111   1   345666666666533  43322 13  4456


Q ss_pred             ccCChhhHHHHHHHHHHHHh
Q 012647          437 AGLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       437 ~~~~~e~i~~~~~~l~~~~~  456 (459)
                      .++.++|++.++++|.+++.
T Consensus       444 r~~~~~~~~~~~~~~~~~~~  463 (464)
T PRK04311        444 RTLEEEDEERLAAALLEALN  463 (464)
T ss_pred             CcCCHHHHHHHHHHHHHHhh
Confidence            67788999999999998764

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.67  E-value=5.3e-14  Score=124.97  Aligned_cols=284  Identities=19%  Similarity=0.162  Sum_probs=184.6

Q ss_pred             cHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeee
Q 012647          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY  207 (459)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~  207 (459)
                      +..|.+.+++|+..        +.+-+  |+|+.++-+.+  +-+.+.+||.|++...++....-.++.+|.++..||-.
T Consensus        63 I~~F~~dlaeFlg~--------D~~R~--t~GARe~Kfav--Mhal~~~gd~vV~D~~aHYttyvAAEragl~v~eVp~t  130 (382)
T COG1103          63 IKDFLEDLAEFLGM--------DEVRV--TAGAREAKFAV--MHALCKEGDWVVVDSLAHYTTYVAAERAGLNVAEVPNT  130 (382)
T ss_pred             HHHHHHHHHHHhCC--------ceeee--cccchhhHHHH--HHHhccCCCEEEEcCcchHHHHHHHHhcCCeEEecCCC
Confidence            46788889999743        45666  99999999998  55557799999999877655555778999999999976


Q ss_pred             cCCCCCCCHHHHHHHHHcC----CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCCh
Q 012647          208 DPKTVGLDFEGMIADIKAA----PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA  283 (459)
Q Consensus       208 ~~~~~~~d~e~l~~~i~~~----~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~  283 (459)
                      ....+.+++|...+.|.+.    .+...+.+++.|...-|..   .+.++++++|+++|+.++...+|.--...   .  
T Consensus       131 g~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl---~Dakkva~ic~e~gvPlllN~AYt~Grmp---v--  202 (382)
T COG1103         131 GYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNL---ADAKKVAKICREYGVPLLLNCAYTVGRMP---V--  202 (382)
T ss_pred             CCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCc---hhhHHHHHHHHHcCCceEeecceeecccc---c--
Confidence            5567899999988877651    2346677777777666766   89999999999999999999998754421   1  


Q ss_pred             hHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhh---ccccccCCchHHHHHHHHHhCChh
Q 012647          284 SSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRL---ARPMYSNPPVHGARIVANVVGNPA  360 (459)
Q Consensus       284 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~~~~  360 (459)
                       +.    .....+++++|-+|+++..| .+|.+..   ..+..+.+...-.+.   +.-...++...++.++..+-+-|.
T Consensus       203 -s~----ke~g~DFiVgSGHKsmAAs~-PiGvl~~---~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~  273 (382)
T COG1103         203 -SG----KEIGADFIVGSGHKSMAASA-PIGVLAM---SEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPH  273 (382)
T ss_pred             -cc----cccCCCEEEecCccchhccC-CeeEEee---hhHHHHHHHhhcccccccceeeeecccccCchHHHHHhcCHH
Confidence             11    12346789999999998554 5998866   777666555433110   000111222333344443333343


Q ss_pred             hH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccC------C-CCCcccc-------------cCCcceeeecCCCHHHH
Q 012647          361 LF---DEWKAEMEMMAGRIKNVRQKLFDSLSAKDK------S-GKDWSFI-------------LRQIGMFSFTGLNKAQS  417 (459)
Q Consensus       361 ~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g------~-~~~~~~~-------------~~~~g~f~~~~l~~~~~  417 (459)
                      ..   ..|++++++        .+++.+.|+ ++|      . |...+..             .+.+|||++        
T Consensus       274 V~eRVkrWdeEv~k--------aR~fv~elE-kigg~~qlG~rPk~HdLm~Fetp~f~eIakk~~r~gyFlY--------  336 (382)
T COG1103         274 VVERVKRWDEEVEK--------ARWFVAELE-KIGGVKQLGERPKNHDLMKFETPVFHEIAKKHKRKGYFLY--------  336 (382)
T ss_pred             HHHHHHHHHHHHHH--------HHHHHHHHH-HhhhHHHhCCCCcccceeeecCchHHHHHHhCcCCceeeH--------
Confidence            32   224444433        334445555 443      1 1100000             122233322        


Q ss_pred             HHHHhcccEE-EcCCC----cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          418 DNMTNKWHVY-MTKDG----RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       418 ~~ll~~~gI~-v~~gg----Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      +.| ++.||. +.||-    .+|+-+++.|+++++++++++++++.
T Consensus       337 ~EL-K~RgI~GI~~G~Tk~~K~svyGl~~Eqve~V~~afkeI~eky  381 (382)
T COG1103         337 EEL-KKRGIHGIQPGQTKYFKLSVYGLSWEQVEYVVDAFKEIAEKY  381 (382)
T ss_pred             HHH-HhcCccccccCceeEEEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence            333 445886 44553    67888889999999999999998864

>PRK07046 aminotransferase; Validated

Probab=99.66  E-value=1.9e-13  Score=137.82  Aligned_cols=334  Identities=14%  Similarity=0.056  Sum_probs=189.4

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...||+..|.--...+..  +|.|.+++.+.++......+ +.....++.+.+++..    +    .+.+.+  +++|+
T Consensus        74 G~~yiD~~~g~g~~~lGh~--~p~i~~Av~~q~~~~~~~~~-~~~~~~~lAe~l~~~~----~----~~~v~F--~nSGt  140 (453)
T PRK07046         74 GHRYDDFCLGDTGAMFGHS--PAPVARALAEQARRGLTTML-PSEDAAWVGEELARRF----G----LPYWQV--ATTAT  140 (453)
T ss_pred             CCEEEEecccccccccCCC--CHHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHHh----C----CCEEEE--ECCHH
Confidence            3568888777532222433  68999999998876432332 3344445556665553    1    367888  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh-h-CCCCe------eeee--eec---CCCCCCCHHHHHHHHHcCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-D-ARVPW------SEYR--YYD---PKTVGLDFEGMIADIKAAPG  228 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~-~G~~v------~~v~--~~~---~~~~~~d~e~l~~~i~~~~~  228 (459)
                      +|...+.++.+.+...++|+..+-+|.++....- . .+.+.      ..++  ...   .-.+ -|++.+++.+..  +
T Consensus       141 EA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-nd~~~l~~~l~~--~  217 (453)
T PRK07046        141 DANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEF-NDLAALEAALAD--G  217 (453)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCC-CCHHHHHHHhCC--C
Confidence            9999999888777666889999988887632111 1 00000      0000  000   0001 278999988853  3


Q ss_pred             CcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc
Q 012647          229 GSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (459)
Q Consensus       229 ~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (459)
                      +...+|+.....-.|.+ .+++-+++|.++|++||+++|.||+.. +..+ ..    ......+..++++   +|+|.+|
T Consensus       218 ~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~g-~G----g~~~~~gv~PDi~---t~gK~lg  288 (453)
T PRK07046        218 DVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-ISSG-PG----GYTRAHGLEPDFL---VVGKPIA  288 (453)
T ss_pred             CeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-CccC-Cc----chhHHhCCCccce---eehhhhc
Confidence            45555554444444544 556789999999999999999999964 4321 10    1112223334544   5899999


Q ss_pred             cCCCCcceEEEEeCChhHHHHHHHHHH-----h-hccccccCCchHHHHHHH---HHhCChhhHHHHHHHHHHHHHHHHH
Q 012647          308 LYAERIGAMNVVCSSSDLAARVKSQLK-----R-LARPMYSNPPVHGARIVA---NVVGNPALFDEWKAEMEMMAGRIKN  378 (459)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~---~~L~~~~~~~~~~~~~~~~~~~~~~  378 (459)
                       .|+.+|.+.+   .++..+.+.....     . ....++ +.+.++..++.   ..+.++++       +++..+.-+.
T Consensus       289 -gG~Pi~av~g---~~~i~~~~~~~~~~~~~~~~~~~~T~-~gnpl~~aa~~a~L~~l~~~~~-------~~~~~~~g~~  356 (453)
T PRK07046        289 -GGVPCAVYGF---SAELAERAQAAKASAPPGHSGIGTTL-SANALAMAAMRATLAEVMTEAA-------YAHMLALAAR  356 (453)
T ss_pred             -CCCcceeeee---hHHHHHHHhhccccCCCCCceeCCCC-cccHHHHHHHHHHHHHHhcccH-------HHHHHHHHHH
Confidence             7999998866   7775544432100     0 111223 33333333333   33333322       1222222333


Q ss_pred             HHHHHHHHHhhccCCCCCcccccCCcceeee-c-C------------CCH----HHHHHHHhcccEEEcCCC---cEEEc
Q 012647          379 VRQKLFDSLSAKDKSGKDWSFILRQIGMFSF-T-G------------LNK----AQSDNMTNKWHVYMTKDG---RISLA  437 (459)
Q Consensus       379 ~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~-~-~------------l~~----~~~~~ll~~~gI~v~~gg---Ris~~  437 (459)
                      .++.|.+.+. +.+++.  . +...|.++.+ . .            .+.    .+...+++ +||.+.|.+   +++..
T Consensus       357 l~~~L~~l~~-~~~~~~--~-v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gv~~~~~~~~~~~~p~  431 (453)
T PRK07046        357 LAAGLRAVIA-RHGLPW--H-VTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLN-RGVLITPFHNMMLVCPA  431 (453)
T ss_pred             HHHHHHHHHH-hCCCCe--E-EEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHH-CCCEEecccCcEEEeCC
Confidence            3333333333 444321  1 2223333321 1 1            011    22345556 599998865   66765


Q ss_pred             cCChhhHHHHHHHHHHHHhhc
Q 012647          438 GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       438 ~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      . ++++|+++++++.++++++
T Consensus       432 ~-t~~did~~~~~~~~~l~~~  451 (453)
T PRK07046        432 T-TAADVDRLVAAFDACLGEL  451 (453)
T ss_pred             C-CHHHHHHHHHHHHHHHHHH
Confidence            4 9999999999999999765

>PLN02880 tyrosine decarboxylase

Probab=99.66  E-value=2.1e-13  Score=138.53  Aligned_cols=317  Identities=9%  Similarity=0.026  Sum_probs=194.3

Q ss_pred             CCCCCCcccHHHHHHHHHHHhcCCCCcccc-----CceEEeecccchhHHHHHHHHHHHhC---------CCCEEEEcCC
Q 012647          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKE-----QRVATVQGLSGTGSLRLAAALIERYF---------PGAKVLISSP  185 (459)
Q Consensus       120 ~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~-----~~i~~~~t~ggt~a~~l~~~~~~~~~---------~gd~Vlv~~p  185 (459)
                      ..|....+..++.+.+.+|+....|.+-..     ..-++  |+|||+++..+....+...         +.-.|++++-
T Consensus       112 ~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~--tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~  189 (490)
T PLN02880        112 FSWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVI--QGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQ  189 (490)
T ss_pred             cccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEE--cCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCC
Confidence            445445566788888888887776654210     12455  8999999987743333211         1125667878


Q ss_pred             CCcchHHHhhhCCCC---eeeeeeecCCCCCCCHHHHHHHHHc---CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 012647          186 TWGNHKNIFNDARVP---WSEYRYYDPKTVGLDFEGMIADIKA---APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQ  259 (459)
Q Consensus       186 ~y~~~~~~~~~~G~~---v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~  259 (459)
                      ++......+..+|..   ++.||+++.+++.+|++.|+++|.+   ....+.+|+-+....+||.+   +++++|+++|+
T Consensus       190 aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~Gai---Dpl~eI~~i~~  266 (490)
T PLN02880        190 THSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAV---DPLLELGKIAK  266 (490)
T ss_pred             chHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCccc---CcHHHHHHHHH
Confidence            888899999999985   7889986445789999999999975   22345677777889999999   99999999999


Q ss_pred             hcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEEcCCcCcccCCCCcceEEEEeCChhHH-HHHHHHHHhhc
Q 012647          260 EKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLA-ARVKSQLKRLA  337 (459)
Q Consensus       260 ~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~-~~~~~~~~~~~  337 (459)
                      +||+|+++|.||.++....     ...+..+.. ..-+.+..+++|.+. ....+|.+.+  +++... ..+......+.
T Consensus       267 ~~~iwlHVDaA~gg~~~~~-----~~~~~~l~gie~aDSit~d~HKwl~-~P~~~g~llv--r~~~~l~~~~~~~~~Yl~  338 (490)
T PLN02880        267 SNGMWFHVDAAYAGSACIC-----PEYRHYIDGVEEADSFNMNAHKWFL-TNFDCSLLWV--KDRNALIQSLSTNPEFLK  338 (490)
T ss_pred             HcCCEEEEehhhHHHHHhC-----HHHHHHhcCchhcCEEEECchhhcC-CCccEEEEEE--eCHHHHHHHHccCHHHhc
Confidence            9999999999998875321     122222222 234678889999986 4566788754  343321 11111000000


Q ss_pred             ccc-----ccCCch----H--HHHHHHH--HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC-C
Q 012647          338 RPM-----YSNPPV----H--GARIVAN--VVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR-Q  403 (459)
Q Consensus       338 ~~~-----~~~~~~----~--~~~~~~~--~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~-~  403 (459)
                      ...     ..+...    .  -.+++..  .|+..+     .+.++++.++.-++++++.+.|+ +..   +++++.+ .
T Consensus       339 ~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G-----~~g~~~~i~~~~~lA~~~~~~l~-~~~---~~el~~~~~  409 (490)
T PLN02880        339 NKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYG-----VENLQSYIRNHIKLAKEFEQLVA-QDS---RFEVVTPRI  409 (490)
T ss_pred             CccccccCCCChhccCcCCCCcccHHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHHh-cCC---CEEEecCCc
Confidence            000     000000    0  0001111  011101     23345555655688888988887 652   1555443 4


Q ss_pred             cceeeec--C--CC--------HHHHHHHHhcccEEEcCC---C----cEEEccC--ChhhHHHHHHHHHHHHhhc
Q 012647          404 IGMFSFT--G--LN--------KAQSDNMTNKWHVYMTKD---G----RISLAGL--SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       404 ~g~f~~~--~--l~--------~~~~~~ll~~~gI~v~~g---g----Ris~~~~--~~e~i~~~~~~l~~~~~~~  458 (459)
                      .++.+|-  +  .+        .+..++|.++..+.+...   |    |+++...  ++++++.+++.|.++.+++
T Consensus       410 ~~iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~  485 (490)
T PLN02880        410 FSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKL  485 (490)
T ss_pred             eEEEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence            4544442  1  11        234556666666766543   3    9998765  5689999999998877653

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.66  E-value=9.1e-14  Score=125.90  Aligned_cols=312  Identities=14%  Similarity=0.129  Sum_probs=199.2

Q ss_pred             CcHHHHHHHHHHhhcCCCCCCCCC---cccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCC
Q 012647          102 VLDVVKKAENLMLERGENKEYLPI---EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA  178 (459)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~---~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd  178 (459)
                      +++.|.+|+..-.     .+|...   +=..++++-+...+....     +.-.++  ...|+.+.+.+  +.+.+.|||
T Consensus        28 l~~~V~~A~~~~~-----lgh~sPe~~qIm~~v~egikyVFkT~n-----~~tf~i--sgsGh~g~E~a--l~N~lePgd   93 (385)
T KOG2862|consen   28 LSGRVQEAMSRPS-----LGHMSPEFVQIMDEVLEGIKYVFKTAN-----AQTFVI--SGSGHSGWEAA--LVNLLEPGD   93 (385)
T ss_pred             CCHHHHHhhcCCc-----cccCCHHHHHHHHHHHHHHHHHhccCC-----CceEEE--ecCCcchHHHH--HHhhcCCCC
Confidence            4677777775532     223221   122344555444433322     234455  66778899988  777788999


Q ss_pred             EEEEcCCC-Cc-chHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHH-HHHHH
Q 012647          179 KVLISSPT-WG-NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQ-WEKIA  255 (459)
Q Consensus       179 ~Vlv~~p~-y~-~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~-l~~i~  255 (459)
                      .|++..-+ |. .+....+++|++|..++.  +.+....+|.+.+++.++  +.++++++....-||+.   ++ ++.+.
T Consensus        94 ~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~--~~G~~~~le~i~~~lsqh--~p~~vfv~hgdsSTgV~---q~~~~~~g  166 (385)
T KOG2862|consen   94 NVLVVSTGTWGQRAADCARRYGAEVDVVEA--DIGQAVPLEEITEKLSQH--KPKAVFVTHGDSSTGVL---QDLLAISG  166 (385)
T ss_pred             eEEEEEechHHHHHHHHHHhhCceeeEEec--CcccCccHHHHHHHHHhc--CCceEEEEecCcccccc---chHHHHHH
Confidence            99988754 43 356788999999999977  567789999999999985  55677777778888888   66 77888


Q ss_pred             HHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc-CCCCcceEEEEeCChhHHHHHHHHHH
Q 012647          256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL-YAERIGAMNVVCSSSDLAARVKSQLK  334 (459)
Q Consensus       256 ~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-~G~RiG~~~~v~~~~~~~~~~~~~~~  334 (459)
                      ++|++|+.++++|.+ ..++-.++..|.|.+        ++.+.+| -|.++. +|+  +-   +|.++...+++.+.-.
T Consensus       167 ~lc~k~~~lllVD~V-aSlggt~F~mDewgV--------DvaytgS-QKaL~aP~GL--si---isfS~ka~~~~~~rK~  231 (385)
T KOG2862|consen  167 ELCHKHEALLLVDTV-ASLGGTEFEMDEWGV--------DVAYTGS-QKALGAPAGL--SI---ISFSDKALEAIRDRKT  231 (385)
T ss_pred             HHhhcCCeEEEEech-hhcCCccceehhhcc--------cEEEecc-hhhcCCCCCc--ce---eecCHHHHHHHhhccC
Confidence            999999999999999 666644343444432        3445444 577754 453  33   3558777777665433


Q ss_pred             hhc-----------c-------cccc-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 012647          335 RLA-----------R-------PMYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGK  395 (459)
Q Consensus       335 ~~~-----------~-------~~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  395 (459)
                      +..           .       ..|. .+|.........+|.     ...++.+++..+++++..++++..|+ ++|+..
T Consensus       232 ~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~-----~I~eeGL~~~~~rH~e~s~~l~~~l~-~~GLq~  305 (385)
T KOG2862|consen  232 KPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALA-----LIAEEGLENSWRRHREMSKWLKLSLE-ALGLQL  305 (385)
T ss_pred             CceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH-HhCccc
Confidence            111           0       0111 233322222222221     11246688999999999999999999 988521


Q ss_pred             CcccccC-------CcceeeecCCCH-HHHHHHHhcccEEEcCC-----C---cEEEccC--ChhhHHHHHHHHHHHHhh
Q 012647          396 DWSFILR-------QIGMFSFTGLNK-AQSDNMTNKWHVYMTKD-----G---RISLAGL--SLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       396 ~~~~~~~-------~~g~f~~~~l~~-~~~~~ll~~~gI~v~~g-----g---Ris~~~~--~~e~i~~~~~~l~~~~~~  457 (459)
                         +...       -.+.-+-.+.+. +.+.+++.+++|.+..|     |   ||.+.+.  +.|.|+..++.|+.++.+
T Consensus       306 ---fv~~e~~rlptvttv~vp~gvDw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~  382 (385)
T KOG2862|consen  306 ---FVVDEELRLPTVTTVKVPYGVDWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQR  382 (385)
T ss_pred             ---eecChhhccCcceeeecCCCCCHHHHHHHHHHhcCEEeccccCCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence               1111       112222235565 55788888767776554     2   9985432  778999999999988865


Q ss_pred             c
Q 012647          458 V  458 (459)
Q Consensus       458 ~  458 (459)
                      .
T Consensus       383 ~  383 (385)
T KOG2862|consen  383 K  383 (385)
T ss_pred             c
Confidence            3

>PLN02271 serine hydroxymethyltransferase

Probab=99.66  E-value=5.5e-14  Score=140.21  Aligned_cols=330  Identities=15%  Similarity=0.149  Sum_probs=192.9

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC------CCcccHHHHHHHHHHHhcCCCCcccc--CceEE
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL------PIEGLAAFNKVTAELLFGADNSVLKE--QRVAT  154 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~------~~~g~~~lr~aia~~l~~~~~~~~~~--~~i~~  154 (459)
                      ..-|+|-..++       .+++.|++++...+.+....+|+      -.+.+.++.....+.....++.....  -+|  
T Consensus       148 ~~~l~LIASEN-------~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNV--  218 (586)
T PLN02271        148 FKGIELIASEN-------FVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNV--  218 (586)
T ss_pred             hcCeeeccccc-------cCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccce--
Confidence            36678876664       23788888887776543333332      22333344332223333323322111  233  


Q ss_pred             eecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh---------hhCCCCeeeee--eecCCCCCCCHHHHHHHH
Q 012647          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF---------NDARVPWSEYR--YYDPKTVGLDFEGMIADI  223 (459)
Q Consensus       155 ~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~---------~~~G~~v~~v~--~~~~~~~~~d~e~l~~~i  223 (459)
                       |..+|+.|+..+  +.+.+.|||+|+..+..+++|....         ...|..+..+|  ++ ++++.+|.+++++..
T Consensus       219 -Qp~SGs~AN~aV--~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d-~~~g~IDyd~lek~a  294 (586)
T PLN02271        219 -QPYSCTSANFAV--YTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVN-PQTGYIDYDKLEEKA  294 (586)
T ss_pred             -eeccHHHHHHHH--HHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccc-cccCccCHHHHHHHh
Confidence             457888898888  5566889999999998887775432         33454444444  43 456789999999854


Q ss_pred             HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCC
Q 012647          224 KAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS  303 (459)
Q Consensus       224 ~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S  303 (459)
                      ..  .++++|++..-.||  ..   -++++|.++|+++|+++++|.++..-...   .+....    .....+++..|.+
T Consensus       295 ~~--~rPKLII~g~Sayp--r~---~D~~~i~eIAdevGA~LmvD~AH~aGLIa---~g~~~s----P~~~aDvvt~TTH  360 (586)
T PLN02271        295 LD--FRPKILICGGSSYP--RE---WDYARFRQIADKCGAVLMCDMAHISGLVA---AKECVN----PFDYCDIVTSTTH  360 (586)
T ss_pred             hh--cCCeEEEECchhcc--Cc---CCHHHHHHHHHHcCCEEEEECcccccccc---cCcCCC----CCcCCcEEEeCCc
Confidence            43  37888988777888  44   45677888999999999999995432211   010000    0112578999999


Q ss_pred             cCcccCCCCcceEEEEeCCh---------------hHHHHHHHHHHhhcccc-ccCCch--HHHHHH-HHHhCChhhHHH
Q 012647          304 KNLGLYAERIGAMNVVCSSS---------------DLAARVKSQLKRLARPM-YSNPPV--HGARIV-ANVVGNPALFDE  364 (459)
Q Consensus       304 K~~~~~G~RiG~~~~v~~~~---------------~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~-~~~L~~~~~~~~  364 (459)
                      |++.  |-|=|.++.  .+.               .....+.+.+....... -+++..  ++..++ ......++    
T Consensus       361 KtLr--GPrGG~I~~--r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~e----  432 (586)
T PLN02271        361 KSLR--GPRGGIIFY--RKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPE----  432 (586)
T ss_pred             ccCC--CCCceEEEe--cccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChH----
Confidence            9982  333477643  221               00001222222222111 112222  222221 11112232    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcce-eeec-----CCCHHHHHHHHhcccEEEc---------
Q 012647          365 WKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGM-FSFT-----GLNKAQSDNMTNKWHVYMT---------  429 (459)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~-f~~~-----~l~~~~~~~ll~~~gI~v~---------  429 (459)
                          .+++.++..++.+.|.+.|. +.|    ++++....-. .+++     |++...+++.|++.||.+.         
T Consensus       433 ----fk~Ya~QVv~NAkaLA~~L~-~~G----~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~d~~  503 (586)
T PLN02271        433 ----YKAYMQQVKKNAQALASALL-RRK----CRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGDNG  503 (586)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHH-HCC----CeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCCCCC
Confidence                35677778888889999998 877    4555322112 2344     3467889999999999873         


Q ss_pred             ---CCC-cEEEc-----cCChhhHHHHHHHHHHHHh
Q 012647          430 ---KDG-RISLA-----GLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       430 ---~gg-Ris~~-----~~~~e~i~~~~~~l~~~~~  456 (459)
                         |+| ||...     ++.+++++++.+.|.++++
T Consensus       504 ~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~  539 (586)
T PLN02271        504 TISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ  539 (586)
T ss_pred             CCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence               234 87532     3467899998888888875

>PRK06062 hypothetical protein; Provisional

Probab=99.65  E-value=2e-13  Score=137.74  Aligned_cols=339  Identities=11%  Similarity=0.020  Sum_probs=188.2

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCC--CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...||+..|.--..-++.  +|.|.+++.+.++....  ..| ......+|-+.+++.....      -+.+.+  +++
T Consensus        52 G~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~q~~~~~~~~~~~-~~~~~~~lae~L~~~~p~~------~~~v~f--~~S  120 (451)
T PRK06062         52 GRRYLDFSSQLVNTNIGHQ--HPKVVAAIQEQAARLCTVAPAH-ANDARSEAARLIAERAPGD------LSKVFF--TNG  120 (451)
T ss_pred             CCEEEEcccCHHhhcCCCC--CHHHHHHHHHHHHhcCCcCCcc-CCHHHHHHHHHHHHhCCCC------CCEEEE--cCC
Confidence            4578898887542233443  68899999888765211  112 2223344555555543111      257888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh-hCCC-----------CeeeeeeecCCC--CC--CC-------H
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARV-----------PWSEYRYYDPKT--VG--LD-------F  216 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~G~-----------~v~~v~~~~~~~--~~--~d-------~  216 (459)
                      |++|++.+.++.+.+....+|+...-+|.+...... ..|.           .+..++......  +.  -|       +
T Consensus       121 GsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  200 (451)
T PRK06062        121 GADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERAL  200 (451)
T ss_pred             hHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHH
Confidence            999999998887766555789999888876643222 1110           112222110000  10  12       5


Q ss_pred             HHHHHHHHcC-CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC
Q 012647          217 EGMIADIKAA-PGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM  294 (459)
Q Consensus       217 e~l~~~i~~~-~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~  294 (459)
                      +.+++.++.. +++...+|+.....-.|.+ ++++-+++|.++|++||+++|+||+..+|+-.+   ..+.... ..-.+
T Consensus       201 ~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG---~~~a~~~-~gv~P  276 (451)
T PRK06062        201 AHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTG---KWFAIEH-FGVVP  276 (451)
T ss_pred             HHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCc---HHHHHHh-cCCCC
Confidence            6777777542 2345566655555556766 577889999999999999999999988775321   1222222 22334


Q ss_pred             eEEEEEcCCcCcccCCC-CcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHH---hCChhhHHHHHHHHH
Q 012647          295 ELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV---VGNPALFDEWKAEME  370 (459)
Q Consensus       295 ~~i~~~S~SK~~~~~G~-RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---L~~~~~~~~~~~~~~  370 (459)
                      +++   +|+|.+| .|+ .+|.+++   .++..+.+... ......++. .+.++..++...   +++.+          
T Consensus       277 Di~---t~gK~lg-gG~~Pigav~~---~~~i~~~~~~~-~~~~~~T~~-gnpl~~Aaa~a~L~~l~~~~----------  337 (451)
T PRK06062        277 DLI---TFAKGVN-SGYVPLGGVAI---SEAIAATFADR-PYPGGLTYS-GHPLACAAAVATINAMEEEG----------  337 (451)
T ss_pred             Cee---eechhhh-cCCcCcEEEEE---cHHHHHHhccC-CCCCCCCCC-CCHHHHHHHHHHHHHHHhcC----------
Confidence            544   6899998 674 8999866   66744443210 001122332 233333333333   32222          


Q ss_pred             HHHHHHHHHH-HHHHHHHhhccC--CCCCcccccCCcceeee--cCC----------------CHHHHHHHHhcccEEEc
Q 012647          371 MMAGRIKNVR-QKLFDSLSAKDK--SGKDWSFILRQIGMFSF--TGL----------------NKAQSDNMTNKWHVYMT  429 (459)
Q Consensus       371 ~~~~~~~~~~-~~l~~~L~~~~g--~~~~~~~~~~~~g~f~~--~~l----------------~~~~~~~ll~~~gI~v~  429 (459)
                       ..++.+++- +++.+.|+ ++-  .|. +..+...|-++.+  ..-                ...+...+++ +||.+.
T Consensus       338 -l~~~~~~~G~~~l~~~L~-~l~~~~~~-v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gvl~~  413 (451)
T PRK06062        338 -IVENAARIGAEVLGPGLR-ELAERHPS-VGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKE-RGLLPF  413 (451)
T ss_pred             -HHHHHHHHHHHHHHHHHH-HHHhcCCc-EEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHH-CCcEEe
Confidence             233333333 34444444 321  000 1122223332211  100                0123445555 699987


Q ss_pred             CCC---cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          430 KDG---RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       430 ~gg---Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                      +.+   ||+... .++++|+++++++.++++.+
T Consensus       414 ~~~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~  446 (451)
T PRK06062        414 VNGNRIHVVPPCTVTEDEVREGLAILDAALAVA  446 (451)
T ss_pred             ecCCEEEEECCccCCHHHHHHHHHHHHHHHHHh
Confidence            654   666432 39999999999999999865

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.65  E-value=5.8e-14  Score=130.97  Aligned_cols=313  Identities=16%  Similarity=0.137  Sum_probs=202.4

Q ss_pred             cHHHHHHHHHHhhcC------CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCC
Q 012647          103 LDVVKKAENLMLERG------ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP  176 (459)
Q Consensus       103 ~~~v~~a~~~~~~~~------~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~  176 (459)
                      .|.|++|+++.+++.      ..+--+...-.-+|.+.+|++- ++      +.-+++   ++.--|+....-.++..-|
T Consensus       187 Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LH-qK------~aALlF---sSCfVANDstLftLak~lp  256 (570)
T KOG1360|consen  187 HPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLH-QK------EAALLF---SSCFVANDSTLFTLAKKLP  256 (570)
T ss_pred             ChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHh-cC------cceeee---eeeeeccchHHHHHHHHCC
Confidence            688999999988641      0011112333457888888884 43      334554   3332333333223445569


Q ss_pred             CCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC-CCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 012647          177 GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA-PGGSFILLHGCAHNPTGIDPTPEQWEKIA  255 (459)
Q Consensus       177 gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~-~~~~~~ii~~~p~NPTG~~~s~~~l~~i~  255 (459)
                      |.+|+-.+-.+...+.-++..|++-..+..       -|++.|++.++.. +..++++-..+++.-+|.+   .+++||+
T Consensus       257 gcei~SD~gNHASMI~GIrns~v~K~IFrH-------ND~~hL~~lL~~~~~svPKivAFEtVhSM~Gav---cpleelc  326 (570)
T KOG1360|consen  257 GCEIFSDEGNHASMIQGIRNSRVPKHIFRH-------NDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAV---CPLEELC  326 (570)
T ss_pred             CcEEeccccchHHHHHHhhhcCCcceeecc-------CCHHHHHHHHHhCCCCCCceEEEeeeeccCCCc---CCHHHHH
Confidence            998888887777777777777776555554       2788888888763 3467888889999999999   8899999


Q ss_pred             HHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH-HhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHH
Q 012647          256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF-ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLK  334 (459)
Q Consensus       256 ~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~  334 (459)
                      +++++||.+-++||++.--.|++.. .  .+..- .-....+++.+++.|+||+-|   ||+..   ...+++.+++...
T Consensus       327 Dvah~yGAiTFlDEVHAVGlYG~rG-a--GvgerdGvm~kvDiIsGTLgKafGcVG---GYIAa---t~~LvDmiRSyAa  397 (570)
T KOG1360|consen  327 DVAHKYGAITFLDEVHAVGLYGPRG-A--GVGERDGVMHKVDIISGTLGKAFGCVG---GYIAA---TRKLVDMIRSYAA  397 (570)
T ss_pred             HHHHHhCceeeeehhhhhccccCCC-C--CccccCCcchhhhhcccchhhhccccc---ceehh---hhhHHHHHHHhcC
Confidence            9999999999999996543443211 0  11000 001124688999999999987   89755   8887777777654


Q ss_pred             hhccccccCCchHHHHH--HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcce-eeecC
Q 012647          335 RLARPMYSNPPVHGARI--VANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGM-FSFTG  411 (459)
Q Consensus       335 ~~~~~~~~~~~~~~~~~--~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~-f~~~~  411 (459)
                      ..+.. ++-||.+..-+  +..+|...        +=+..+...+++-.++.+.|. +.|+    .+++....+ .+.+|
T Consensus       398 GFIFT-TSLPP~vl~GAleaVr~lk~~--------eg~~lR~~hqrnv~~~kq~l~-~~Gi----PVi~~pSHIiPv~vg  463 (570)
T KOG1360|consen  398 GFIFT-TSLPPMVLAGALEAVRILKSE--------EGRVLRRQHQRNVKYVKQLLM-ELGI----PVIPNPSHIIPVRVG  463 (570)
T ss_pred             ceEEe-cCCChHHHHhHHHHHHHHhhh--------hhHHHHHHHHHHHHHHHHHHH-HcCC----cccCCCcceeeeecc
Confidence            44433 33445543222  23344322        124556677778888899999 9985    444333322 24444


Q ss_pred             C---CHHHHHHHHhcccEEEcCC-------C----cEEEccC-ChhhHHHHHHHHHHHHhhc
Q 012647          412 L---NKAQSDNMTNKWHVYMTKD-------G----RISLAGL-SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       412 l---~~~~~~~ll~~~gI~v~~g-------g----Ris~~~~-~~e~i~~~~~~l~~~~~~~  458 (459)
                      .   +.+....|+.++||++..-       |    ||.-+.- |++-++.+++++..+++++
T Consensus       464 da~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v  525 (570)
T KOG1360|consen  464 DAALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWNEV  525 (570)
T ss_pred             CHHHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            3   4466789999999998543       4    6654322 7788899999999888764

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.65  E-value=3e-13  Score=136.52  Aligned_cols=338  Identities=12%  Similarity=0.036  Sum_probs=188.3

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC--CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...+|+..|..-...++.  +|.|.+++.+.+++..  ...|.+.....+|-+.+++.....      .+.+.+  +++
T Consensus        52 G~~ylD~~~g~~~~~lGh~--~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~------~~~v~f--~~S  121 (457)
T PRK05639         52 GNVFIDFLAGAAAASTGYS--HPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISPIE------NPKVLF--GLS  121 (457)
T ss_pred             CCEEEECCcCHHhhccCCC--CHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHhhCCCC------cCEEEE--eCc
Confidence            3578898888642333443  7889999988876421  112333333345555555543211      257888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH-hhhCC--------C-----CeeeeeeecCCC--CC----CCHH--
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI-FNDAR--------V-----PWSEYRYYDPKT--VG----LDFE--  217 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~-~~~~G--------~-----~v~~v~~~~~~~--~~----~d~e--  217 (459)
                      |++|++.+.++........+|+....+|.+.... +...|        .     .++.+|..+...  +.    -|.+  
T Consensus       122 GsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  201 (457)
T PRK05639        122 GSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDEL  201 (457)
T ss_pred             hHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHH
Confidence            9999999998877666667899988888764322 11111        1     133344321100  00    1222  


Q ss_pred             ------HHHHHHHc---CCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHH
Q 012647          218 ------GMIADIKA---APGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR  287 (459)
Q Consensus       218 ------~l~~~i~~---~~~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~  287 (459)
                            .+++.+..   .++....+|+...+...|. .++++-+++|.++|++||+++|.||++.+++-.+   ..+...
T Consensus       202 ~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG---~~~a~~  278 (457)
T PRK05639        202 INRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTG---KWFASE  278 (457)
T ss_pred             HHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCc---hHHHHH
Confidence                  34443321   1345666776666666777 4567889999999999999999999988765322   222222


Q ss_pred             HHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHH
Q 012647          288 LFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA  367 (459)
Q Consensus       288 ~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~  367 (459)
                      . .+..+++++   |+|.++ .|+.+|++++   +++..+    ........++ +.+.++..++...|+   ..   ++
T Consensus       279 ~-~gv~PDiv~---~gK~l~-gG~pi~av~~---~~~i~~----~~~~~~~~T~-~g~p~~~aaa~a~l~---~l---~~  339 (457)
T PRK05639        279 W-FEVKPDLII---FGKGVA-SGMGLSGVIG---RKELMD----LTSGSALLTP-AANPVISAAAEATLE---II---EE  339 (457)
T ss_pred             h-cCCCCCEEE---echhhc-CCCcceeEEe---hHHHHh----hcCCCcccCC-CcCHHHHHHHHHHHH---HH---HH
Confidence            2 233345443   899998 7888999866   777433    1111111223 223333333332221   10   00


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc----cCCCCCcccccCCcceee--ecC-C---C----HHHHHHHHhcccEEEcCCC-
Q 012647          368 EMEMMAGRIKNVRQKLFDSLSAK----DKSGKDWSFILRQIGMFS--FTG-L---N----KAQSDNMTNKWHVYMTKDG-  432 (459)
Q Consensus       368 ~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~g~f~--~~~-l---~----~~~~~~ll~~~gI~v~~gg-  432 (459)
                        +...++.+++-++|.+.|+ +    +++   +..+.-.|-++.  +.. .   +    ..+.+.+++ +||.+.+.| 
T Consensus       340 --~~l~~~~~~~g~~l~~~L~-~l~~~~~~---~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~-~Gv~~~~~g~  412 (457)
T PRK05639        340 --ENLLKNALKVGEFIKKRLL-EMKESFEV---IGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAFE-LGLILPSYGM  412 (457)
T ss_pred             --ccHHHHHHHHHHHHHHHHH-HHHHhCCC---EEeeccceeEEEEEEecCCCCCCHHHHHHHHHHHHh-CCeEEeecCC
Confidence              1223444445555555555 4    221   112223332222  111 0   1    133455666 599997743 


Q ss_pred             -----cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          433 -----RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       433 -----Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                           |+...- .+++++++++++|.++++.+
T Consensus       413 ~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~  444 (457)
T PRK05639        413 FGNVIRITPPLVITKEIAEKGLEIMERAIKDA  444 (457)
T ss_pred             CCCEEEEeCCCccCHHHHHHHHHHHHHHHHHH
Confidence                 555332 38999999999999998653

>PLN02263 serine decarboxylase

Probab=99.65  E-value=2e-13  Score=135.35  Aligned_cols=299  Identities=12%  Similarity=0.044  Sum_probs=193.1

Q ss_pred             ccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeee
Q 012647          127 GLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRY  206 (459)
Q Consensus       127 g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~  206 (459)
                      +..++.+.+.+|+....|.+-+.-.=.+  |+|||+|+..+....+...+...|++++.++..+...++.+|.+++.||+
T Consensus       130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~v--tsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~  207 (470)
T PLN02263        130 HSRQFEVGVLDWFARLWEIEKNEYWGYI--TNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDT  207 (470)
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCCCeEEE--eCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhcCCcceEecc
Confidence            5677888888887766665311112345  89999999998555544445568899999999999999999999999998


Q ss_pred             ecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCC-----eeEEeccCCCCCCCCCCC
Q 012647          207 YDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNH-----IPFFDVAYQGFASGSLDN  281 (459)
Q Consensus       207 ~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~-----~ii~Deay~~~~~~~~~~  281 (459)
                        ++++.+|++.|+++|.+...++.+++.+.+..+||.+   +++++|+++|+++|+     |+++|.||.++...-. .
T Consensus       208 --d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAi---Dpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~-~  281 (470)
T PLN02263        208 --LVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAV---DDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFV-K  281 (470)
T ss_pred             --CCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCC---CCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhc-c
Confidence              4578999999999998744346777778899999999   999999999999997     9999999988753110 1


Q ss_pred             ChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHH---HHHhhccccccCCchHHHHHHHH--Hh
Q 012647          282 DASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKS---QLKRLARPMYSNPPVHGARIVAN--VV  356 (459)
Q Consensus       282 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~L  356 (459)
                      ....+. +  ...-+-+..+.+|.++. .+..|.+.+  +. ...+.+..   .+.. ... +..-+.-+..++..  .|
T Consensus       282 ~~~~~d-f--~~~vDSIsvD~HK~l~~-P~~cgvll~--R~-~~~~~~~~~~~Yl~~-~d~-ti~gSR~g~~al~lW~~L  352 (470)
T PLN02263        282 RAPKVT-F--KKPIGSVSVSGHKFVGC-PMPCGVQIT--RM-EHINVLSSNVEYLAS-RDA-TIMGSRNGHAPIFLWYTL  352 (470)
T ss_pred             cccccC-C--CcCccEEEECCccccCC-CcCEEEEEE--eh-hhHhhhccChHhhCC-CCC-CcCCCCCcHHHHHHHHHH
Confidence            111110 1  11244566799999874 466788754  33 32222211   1111 001 11111111111111  11


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCC---c
Q 012647          357 GNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDG---R  433 (459)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~gg---R  433 (459)
                      ...+     .+.+++..++.-++.+++.+.|+ +.|+   ..+..|.....+|..-+.+.   ..+  |..+..-+   +
T Consensus       353 ~~~G-----~~G~~~~i~~~~~~A~~l~~~l~-~~g~---~~~~~p~s~~V~f~~p~~~~---~~~--gW~L~~~~~~~H  418 (470)
T PLN02263        353 NRKG-----YRGFQKEVQKCLRNAHYLKDRLR-EAGI---SAMLNELSSTVVFERPKDEE---FVR--RWQLACQGNIAH  418 (470)
T ss_pred             HHhC-----HHHHHHHHHHHHHHHHHHHHHHH-hCCC---eEEeCCCceEEEEecCchHH---hhc--ceEEccCCCcEE
Confidence            1111     34567788888889999999999 8763   23445665555554322222   123  44444433   8


Q ss_pred             EEEcc-CChhhHHHHHHHHHHHHh
Q 012647          434 ISLAG-LSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       434 is~~~-~~~e~i~~~~~~l~~~~~  456 (459)
                      |.+.. .+.+.++++++.|++..+
T Consensus       419 ivvmphv~~~~id~fi~DL~~~~~  442 (470)
T PLN02263        419 VVVMPSVTIEKLDYFLKELVEKRS  442 (470)
T ss_pred             EEEcCCCCHHHHHHHHHHHHHHHh
Confidence            88765 478899999999988765

>PRK07678 aminotransferase; Validated

Probab=99.65  E-value=3.4e-13  Score=136.22  Aligned_cols=337  Identities=11%  Similarity=0.060  Sum_probs=187.2

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCC--CCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK--EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~--~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...||+..|..-...++.  +|.|.+++.+.++.....  .| +.....+|.+.+++....       .+.+.+  +++
T Consensus        46 G~~ylD~~~g~~~~~lGh~--~p~v~~ai~~q~~~~~~~~~~~-~~~~~~~lae~l~~~~~~-------~~~v~f--~~s  113 (451)
T PRK07678         46 GNRYLDGMSGLWCVNVGYG--RKELAEAAYEQLKTLSYFPLTQ-SHEPAIKLAEKLNEWLGG-------EYVIFF--SNS  113 (451)
T ss_pred             CCEEEEccccHHhhcCCCC--CHHHHHHHHHHHHhcCcccccc-CCHHHHHHHHHHHHhCCC-------CCEEEE--eCC
Confidence            4578888877542233443  788999988887643111  12 222233455555554311       247888  999


Q ss_pred             chhHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchHHHhh-hCC------------CCeeeeeeecCCCCCC------
Q 012647          160 GTGSLRLAAALIERYF-----PG-AKVLISSPTWGNHKNIFN-DAR------------VPWSEYRYYDPKTVGL------  214 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~-----~g-d~Vlv~~p~y~~~~~~~~-~~G------------~~v~~v~~~~~~~~~~------  214 (459)
                      |++|++.+.++.+.+.     +| .+|+...-+|.+...... ..|            ..+..+|..  +.+..      
T Consensus       114 GseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  191 (451)
T PRK07678        114 GSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPP--DCYRMPGIESE  191 (451)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCC--ccccccccCCh
Confidence            9999999988877653     23 578988888876543222 111            112223321  11111      


Q ss_pred             ---C---HHHHHHHHH-cCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH
Q 012647          215 ---D---FEGMIADIK-AAPGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (459)
Q Consensus       215 ---d---~e~l~~~i~-~~~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~  286 (459)
                         |   ++.+++.+. ..++....+|+...+.-.|.+ ++++-++++.++|++||+++|.||+..+|+-.+   ..+..
T Consensus       192 ~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~~~~  268 (451)
T PRK07678        192 DIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTG---KAFGF  268 (451)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCc---hhHHH
Confidence               1   223555564 223456666665555556665 577789999999999999999999988886321   22333


Q ss_pred             HHHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHH---hhccccccCCchHHHHHHHHHh---CCh
Q 012647          287 RLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLK---RLARPMYSNPPVHGARIVANVV---GNP  359 (459)
Q Consensus       287 ~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L---~~~  359 (459)
                      .. .+-.++++   +++|.+| .| +.+|.+++   +++..+.+.....   .....++ +.+.++..++...|   ++.
T Consensus       269 ~~-~gv~PDiv---t~gK~lg-gG~~Pi~av~~---~~~i~~~~~~~~~~~~~~h~~T~-~gnp~~~aaa~a~l~~l~~~  339 (451)
T PRK07678        269 MN-YGVKPDII---TMAKGIT-SAYLPLSATAV---KKEIYEAFKGKGEYEHFRHVNTF-GGNPAACALALKNLEIMENE  339 (451)
T ss_pred             Hh-cCCCCCEE---Eeecccc-cCCcceeEEEE---cHHHHHHHhccCcccccccCCCC-CcCHHHHHHHHHHHHHHHhC
Confidence            22 23334555   6799998 66 68999866   7775544432110   0122333 33333333443332   222


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCCCCCcccccCCcceee--ecC-------CCH----HHHHHHHhc
Q 012647          360 ALFDEWKAEMEMMAGRIKNVRQKLFDSLSA---KDKSGKDWSFILRQIGMFS--FTG-------LNK----AQSDNMTNK  423 (459)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~~g~~~~~~~~~~~~g~f~--~~~-------l~~----~~~~~ll~~  423 (459)
                                 ...++.+++-++|.+.|++   +++.   +..+...|.++.  +..       .+.    .+...+++ 
T Consensus       340 -----------~~~~~~~~~g~~l~~~l~~~~~~~~~---v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~-  404 (451)
T PRK07678        340 -----------NLIERSAQLGELLLEQLKEELGEHPL---VGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACKE-  404 (451)
T ss_pred             -----------CHHHHHHHHHHHHHHHHHHHHhcCCC---EEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHHH-
Confidence                       2233444444444444430   3331   112223333331  111       011    23445555 


Q ss_pred             ccEEEcCC--------C--cEEEc-cCChhhHHHHHHHHHHHHhhcC
Q 012647          424 WHVYMTKD--------G--RISLA-GLSLAKCEYLADAIIDSYHNVS  459 (459)
Q Consensus       424 ~gI~v~~g--------g--Ris~~-~~~~e~i~~~~~~l~~~~~~~~  459 (459)
                      +||.+.+.        .  ||+.. ..+++||+++++++.++++++.
T Consensus       405 ~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~~  451 (451)
T PRK07678        405 KGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERIK  451 (451)
T ss_pred             CCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhcC
Confidence            59998653        2  55533 2389999999999999998763

>PLN02590 probable tyrosine decarboxylase

Probab=99.65  E-value=6.4e-13  Score=135.19  Aligned_cols=329  Identities=10%  Similarity=0.034  Sum_probs=202.9

Q ss_pred             HHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccc-----cCceEEeecccchhHHHHHHHHHHHh--------
Q 012647          108 KAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLK-----EQRVATVQGLSGTGSLRLAAALIERY--------  174 (459)
Q Consensus       108 ~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~-----~~~i~~~~t~ggt~a~~l~~~~~~~~--------  174 (459)
                      +.+...+.. ....|....+..++.+.+.+|+....|.+-.     ...-++  |+|||+|+..+....+..        
T Consensus       149 d~l~sa~n~-~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~--~sGgSeAnl~al~aAR~~~~~~~g~~  225 (539)
T PLN02590        149 EMLNAGLSV-VGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVI--QGTGCEAVLVVVLAARDRILKKVGKT  225 (539)
T ss_pred             HHHHHhccc-ccCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEE--cCchHHHHHHHHHHHHHHHHhhhccc
Confidence            334444432 2355666677788888999998887776421     122445  899999997764332221        


Q ss_pred             -CCCCEEEEcCCCCcchHHHhhhCCC---CeeeeeeecCCCCCCCHHHHHHHHHc---CCCCcEEEEeCCCCCCCCCCCC
Q 012647          175 -FPGAKVLISSPTWGNHKNIFNDARV---PWSEYRYYDPKTVGLDFEGMIADIKA---APGGSFILLHGCAHNPTGIDPT  247 (459)
Q Consensus       175 -~~gd~Vlv~~p~y~~~~~~~~~~G~---~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~ii~~~p~NPTG~~~s  247 (459)
                       .+.-.|++++.++......++.+|.   .++.||++..+++.+|++.|+++|.+   ....+.+|+-+.....||.+  
T Consensus       226 ~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGai--  303 (539)
T PLN02590        226 LLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAV--  303 (539)
T ss_pred             CCCCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCccc--
Confidence             0222566778888889999999888   58889986445789999999999965   22345677777789999999  


Q ss_pred             HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEEcCCcCcccCCCCcceEEEEeCChhHH
Q 012647          248 PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLA  326 (459)
Q Consensus       248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~  326 (459)
                       +++++|+++|++||+|+++|.||.++..-.     +..+.+... ..-+-+..+++|.+.. ..-+|.+.  ++++...
T Consensus       304 -Dpl~~Ia~i~~~~g~WlHVDaA~GG~al~~-----~~~r~~~~Gie~ADSit~D~HK~l~~-p~~cg~ll--vr~~~~l  374 (539)
T PLN02590        304 -DPLVPLGNIAKKYGIWLHVDAAYAGNACIC-----PEYRKFIDGIENADSFNMNAHKWLFA-NQTCSPLW--VKDRYSL  374 (539)
T ss_pred             -CCHHHHHHHHHHhCCeEEEecchhhhhhcC-----hhhHHHhcCCccCCEEEECchhhcCc-CcCEEEEE--ecCHHHH
Confidence             999999999999999999999999876321     122333322 2235567799999874 45577774  4554322


Q ss_pred             -HHHH---HHHHhhcc--------ccc-cCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012647          327 -ARVK---SQLKRLAR--------PMY-SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  393 (459)
Q Consensus       327 -~~~~---~~~~~~~~--------~~~-~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  393 (459)
                       +.+.   ..+.....        ..+ ...+.- .+++..++.   +...-.+.++++.++.-++.+++.+.|+ +.+ 
T Consensus       375 ~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr-~raLklW~~---lr~~G~~G~~~~i~~~~~lA~~~~~~l~-~~~-  448 (539)
T PLN02590        375 IDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRR-FRSLKLWMV---LRLYGSENLRNFIRDHVNLAKHFEDYVA-QDP-  448 (539)
T ss_pred             HHHhhcCHHHhCCcccccccCCCccccCCCCCCc-hHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC-
Confidence             1111   11110000        000 001111 122211110   0000135577888888889999999998 653 


Q ss_pred             CCCccccc-CCcceeeec--C--CC--------HHHHHHHHhcccEEEcCC---C----cEEEccC--ChhhHHHHHHHH
Q 012647          394 GKDWSFIL-RQIGMFSFT--G--LN--------KAQSDNMTNKWHVYMTKD---G----RISLAGL--SLAKCEYLADAI  451 (459)
Q Consensus       394 ~~~~~~~~-~~~g~f~~~--~--l~--------~~~~~~ll~~~gI~v~~g---g----Ris~~~~--~~e~i~~~~~~l  451 (459)
                        .|+++. ++-+..+|-  +  .+        .++.+++.+.-.+++.+.   |    |+++.+.  ++++++.+++.|
T Consensus       449 --~fel~~~~~l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i  526 (539)
T PLN02590        449 --SFEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQII  526 (539)
T ss_pred             --CeEEecCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHH
Confidence              266554 344444442  1  12        233445555544555543   3    9988764  688999999999


Q ss_pred             HHHHhhc
Q 012647          452 IDSYHNV  458 (459)
Q Consensus       452 ~~~~~~~  458 (459)
                      .+...++
T Consensus       527 ~~~a~~~  533 (539)
T PLN02590        527 QKHASKF  533 (539)
T ss_pred             HHHHHHh
Confidence            8876553

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=99.65  E-value=2.5e-15  Score=139.08  Aligned_cols=285  Identities=12%  Similarity=0.086  Sum_probs=166.7

Q ss_pred             cHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHh--CC--CCEEEEcCCCCcchHHHhhhCCCCeee
Q 012647          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY--FP--GAKVLISSPTWGNHKNIFNDARVPWSE  203 (459)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~--~~--gd~Vlv~~p~y~~~~~~~~~~G~~v~~  203 (459)
                      .++|.+.|.++-....+...+...|++  ..|+|+-++.+.-.+..-  ..  --.|+...|.|+.|....+...-....
T Consensus        45 s~eL~~~Ir~LH~~VGNAvt~gr~IV~--GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~  122 (363)
T PF04864_consen   45 SPELERQIRRLHRVVGNAVTDGRYIVF--GTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYK  122 (363)
T ss_dssp             -HHHHHHHHHHHHHH-SB--TTSEEEE--ECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEE
T ss_pred             cHHHHHHHHHHHHHhccccccCcEEEE--cCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCcc
Confidence            378888888875444444445567877  888898888873333222  11  148999999999999887765443333


Q ss_pred             eeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCCh
Q 012647          204 YRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA  283 (459)
Q Consensus       204 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~  283 (459)
                      ..-+ ...|.          +...+.+.+=++++||||.|.+     .+.+   ++.-+..+|.|-||..-.|.++    
T Consensus       123 w~Gd-a~~~~----------~~~~~~~~IElVTSPNNPDG~l-----r~~V---~~g~~~k~I~D~AYYWPhyTpI----  179 (363)
T PF04864_consen  123 WAGD-ASNFK----------NSDNPSPYIELVTSPNNPDGQL-----REAV---LNGSSGKVIHDLAYYWPHYTPI----  179 (363)
T ss_dssp             EEEE-CCCGT----------T-S-CCGEEEEEESS-TTT-----------S---STTTEEEEEEE-TT-STTTS------
T ss_pred             cccc-HHhhc----------cCCCCCCeEEEEeCCCCCcccc-----cchh---cCCCCcceeeeeeeeccccccc----
Confidence            3322 12221          1111357788889999999988     2222   3455677899999998877532    


Q ss_pred             hHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCCh--hh
Q 012647          284 SSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNP--AL  361 (459)
Q Consensus       284 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~--~~  361 (459)
                         .   ...+.+|.++|+||.-|-+|-|+||.  +.++++..+++...+.    ..+.+++.=+|.-+..+|+--  .+
T Consensus       180 ---~---~~aD~DiMLFT~SK~TGHAGSR~GWA--lVKD~~Va~kM~~y~~----lnTiGvS~dsQLRa~kiLk~v~~~~  247 (363)
T PF04864_consen  180 ---T---APADHDIMLFTLSKLTGHAGSRFGWA--LVKDEEVAKKMTKYME----LNTIGVSRDSQLRALKILKVVLDGY  247 (363)
T ss_dssp             -------S-B--SEEEEEHHHHCS-GGG-EEEE--EES-HHHHHHHHHHHH----HHCSS--HHHHHHHHHHHHHHHHHC
T ss_pred             ---C---CCCCCceEEEEEecccCcccccccee--eecCHHHHHHHHHHHH----HhcccCcHHHHHHHHHHHHHHHhcc
Confidence               1   12356799999999999999999999  5688886666555544    345577887887776665310  00


Q ss_pred             HHH--HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc-------------cCCcceeeecCCCH---HHHHHHHhc
Q 012647          362 FDE--WKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI-------------LRQIGMFSFTGLNK---AQSDNMTNK  423 (459)
Q Consensus       362 ~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~-------------~~~~g~f~~~~l~~---~~~~~ll~~  423 (459)
                      ...  -.+...--++.++++.+.|.+.+. .-+.   ++..             .....-|.|+....   +.+...+++
T Consensus       248 ~~~~~~~~~F~f~~~~M~~RW~~L~~~~~-~S~r---FSLq~~~~~yC~ff~~~~~psPafAWlkCe~eed~DC~~~l~~  323 (363)
T PF04864_consen  248 GTEKGTEDIFHFGYSTMRERWEKLRAAVS-ASKR---FSLQKFSPQYCNFFKRVREPSPAFAWLKCEREEDEDCYAVLRE  323 (363)
T ss_dssp             CHHTTTTSHHHHHHHHHHHHHHHHHHHHC-CSSS---EEE---SCEEETTTTCEEE---SEEEEEESSCGGSSHHHHHHC
T ss_pred             cCCCCccchHHHHHHHHHHHHHHHHHHHH-hcCc---eecCcCCchhccccccccCCCCCeEEEecCCcccccHHHHHHh
Confidence            000  001234456667777777777776 4321   1111             11234588887642   458888889


Q ss_pred             ccEEEcCCC---------cEEEccCChhhHHHHHHHHHHH
Q 012647          424 WHVYMTKDG---------RISLAGLSLAKCEYLADAIIDS  454 (459)
Q Consensus       424 ~gI~v~~gg---------Ris~~~~~~e~i~~~~~~l~~~  454 (459)
                      +||..+.|.         |||+-. ++++++.++++|..+
T Consensus       324 ~~I~tr~G~~fga~~ryVRlSml~-~~d~Fd~l~~rL~~l  362 (363)
T PF04864_consen  324 AKIITRSGVLFGADSRYVRLSMLK-RDDDFDQLLERLSKL  362 (363)
T ss_dssp             TTEEEEEGGGGTS-TTEEEEESSS--HHHHHHHHHHHHCC
T ss_pred             CCcccCCCCccCCCCCeEEEeccC-CHHHHHHHHHHHHhh
Confidence            999999883         999987 899999999999764

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>PRK07482 hypothetical protein; Provisional

Probab=99.64  E-value=4e-13  Score=135.96  Aligned_cols=340  Identities=14%  Similarity=0.055  Sum_probs=189.5

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CCCC--CCCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y--~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      +...||+..|..-..-++.  +|+|.+++.+.+++.. ...+  .+.....+|-+.+++.....      -+.+.+  ++
T Consensus        49 G~~ylD~~sg~~~~~lGh~--~p~v~~Av~~q~~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~------~~~v~f--~~  118 (461)
T PRK07482         49 GRRYIDAFAGLYCVNVGYG--RTEVAEAIAEQAKELAYYHTYVGHGTEASITLSKRIIDRAPAG------MSKVYY--GL  118 (461)
T ss_pred             CCEEEEcccchhhhcCCCC--CHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHhCCCC------cCEEEE--eC
Confidence            4578899888653333443  7889999998886531 0111  12222334444444442111      357888  99


Q ss_pred             cchhHHHHHHHHHHHhC-----C-CCEEEEcCCCCcchHHHhhh-CC------------CCeeeeeeecCCCC---C---
Q 012647          159 SGTGSLRLAAALIERYF-----P-GAKVLISSPTWGNHKNIFND-AR------------VPWSEYRYYDPKTV---G---  213 (459)
Q Consensus       159 ggt~a~~l~~~~~~~~~-----~-gd~Vlv~~p~y~~~~~~~~~-~G------------~~v~~v~~~~~~~~---~---  213 (459)
                      +|++|++.+.++...+.     + ..+|+....+|.+....... .|            ..+..+|.......   +   
T Consensus       119 sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  198 (461)
T PRK07482        119 SGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSE  198 (461)
T ss_pred             chHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCH
Confidence            99999999988876542     2 35789888888765322111 11            11222222100000   0   


Q ss_pred             -----CCHHHHHHHHHc-CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH
Q 012647          214 -----LDFEGMIADIKA-APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (459)
Q Consensus       214 -----~d~e~l~~~i~~-~~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~  286 (459)
                           -+++.+++.+.. .++....+|+...+...|.+ ++++-+++|.++|++||+++|.||+..+|+-.+   ..+..
T Consensus       199 ~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG---~~~a~  275 (461)
T PRK07482        199 EQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLG---SMFGS  275 (461)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCc---chhhH
Confidence                 145777777753 23455666666666666776 577789999999999999999999998886321   22333


Q ss_pred             HHHHhcCCeEEEEEcCCcCcccCCC-CcceEEEEeCChhHHHHHHHHHH---h-hccccccCCchHHHHHHHHH---hCC
Q 012647          287 RLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARVKSQLK---R-LARPMYSNPPVHGARIVANV---VGN  358 (459)
Q Consensus       287 ~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~~~v~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~---L~~  358 (459)
                      .. .+-.++++   .++|.++ .|+ .+|.+++   .++..+.+.....   . ...+++ +.+.++..++...   +++
T Consensus       276 ~~-~gv~PDiv---~~gKgl~-gG~~Pi~av~~---~~~i~~~~~~~~~~~~~~~h~~T~-~gnpl~~Aaa~a~L~~~~~  346 (461)
T PRK07482        276 DH-YGIEPDLI---TVAKGLT-SAYAPLSGSIV---GEKVWDVLEQGSDEHGAIGHGWTY-SGHPICAAAALANLDILER  346 (461)
T ss_pred             Hh-cCCCCCEE---EEccccc-cCccccceeee---cHHHHHHHhcccccCCccccCCCC-CcCHHHHHHHHHHHHHHHh
Confidence            22 23345555   4799998 675 8888865   6664433321100   1 122223 3344444444333   332


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCCCCCcccccCCcceeee-c-C-C------C------HHHHHHH
Q 012647          359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSA---KDKSGKDWSFILRQIGMFSF-T-G-L------N------KAQSDNM  420 (459)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~~g~~~~~~~~~~~~g~f~~-~-~-l------~------~~~~~~l  420 (459)
                      +           ...++.+++-++|.+.|++   +++.   +..+.-.|.++.. + . -      +      ..+...+
T Consensus       347 ~-----------~l~~~~~~~g~~l~~~L~~l~~~~~~---v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~  412 (461)
T PRK07482        347 E-----------NLVGNAAEVGAYFRARLRAAFGDHPL---VGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAA  412 (461)
T ss_pred             C-----------CHHHHHHHHHHHHHHHHHHHHhcCCC---EEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHH
Confidence            2           2234444555555555540   3321   1122233323211 1 1 0      1      1234455


Q ss_pred             HhcccEEEcCC--C---cEEEc-cCChhhHHHHHHHHHHHHhhc
Q 012647          421 TNKWHVYMTKD--G---RISLA-GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       421 l~~~gI~v~~g--g---Ris~~-~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      ++ +||.+.+.  |   |+..+ ..++++++++++++.++++++
T Consensus       413 ~~-~Gvl~~~~~~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~  455 (461)
T PRK07482        413 LE-RGVIARAMPHGDILGFAPPLVLTRAEADEIVAIAKDAVDEV  455 (461)
T ss_pred             HH-CCcEEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            65 69998643  4   66422 239999999999999988753

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.64  E-value=2.3e-13  Score=137.35  Aligned_cols=340  Identities=10%  Similarity=-0.003  Sum_probs=192.3

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CCC-CCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKE-YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~-Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...||+..|..-..-+..  +|.|.+++.+.+++.. ... ..+.....+|-+.+++.....      -+.+.+  +++
T Consensus        53 G~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~------~~~v~f--~~s  122 (453)
T PRK06943         53 GRRYLDAISSWWVNLFGHA--NPRINAALKDQLDTLEHAMLAGCTHEPAIELAERLAALTGGT------LGHAFF--ASD  122 (453)
T ss_pred             CCEEEEcchHHHHhcCCCC--CHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCC------CCEEEE--eCC
Confidence            4578898877542233443  7889999988876421 011 112222334444444432111      257888  999


Q ss_pred             chhHHHHHHHHHHHh-----CC-CCEEEEcCCCCcchHH-HhhhCC------------CCeeeeeeecCCC--CC-----
Q 012647          160 GTGSLRLAAALIERY-----FP-GAKVLISSPTWGNHKN-IFNDAR------------VPWSEYRYYDPKT--VG-----  213 (459)
Q Consensus       160 gt~a~~l~~~~~~~~-----~~-gd~Vlv~~p~y~~~~~-~~~~~G------------~~v~~v~~~~~~~--~~-----  213 (459)
                      |++|++.+.++....     .+ ..+|+...-+|.+... .+...|            ..+..+|......  +.     
T Consensus       123 GseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  202 (453)
T PRK06943        123 GASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAAD  202 (453)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHH
Confidence            999999998886443     12 3689999988876532 111111            0122333311100  00     


Q ss_pred             ---CCHHHHHHHHHcCCCCcEEEEeCC-CCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH
Q 012647          214 ---LDFEGMIADIKAAPGGSFILLHGC-AHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (459)
Q Consensus       214 ---~d~e~l~~~i~~~~~~~~~ii~~~-p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~  288 (459)
                         -+++.+++.+...++....+|+.. .+...|. .++++-+++|.++|++||+++|.||+..+++-.+   ..+....
T Consensus       203 ~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG---~~fa~~~  279 (453)
T PRK06943        203 VAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTG---TFFACEQ  279 (453)
T ss_pred             HHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCc---chhHHHh
Confidence               135677777765444566666555 3666676 4678889999999999999999999988886322   2333322


Q ss_pred             HHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHH---HhhccccccCCchHHHHHHHHH---hCChhh
Q 012647          289 FATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQL---KRLARPMYSNPPVHGARIVANV---VGNPAL  361 (459)
Q Consensus       289 ~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---L~~~~~  361 (459)
                       .+..++++   .++|.++ .| +.+|.+++   .++..+.+...-   ......++ +.+.++..++...   ++++  
T Consensus       280 -~gv~PDiv---t~gKgl~-gG~~Pi~av~~---~~ei~~~~~~~~~~~~~~~~~T~-~gnpl~~aaa~a~L~~i~~~--  348 (453)
T PRK06943        280 -AGVWPDFL---CLSKGIS-GGYLPLSLVLS---RDAIFAAFYDDDVTRGFLHSHSY-TGNPLACRAALATLDLFAED--  348 (453)
T ss_pred             -CCCCCCeE---eeehhhc-cCcccceEEEE---cHHHHHhhcccCccCCccCCCCC-CCCHHHHHHHHHHHHHHHhc--
Confidence             23345655   4699998 78 58999866   777444332110   00122233 2334443444333   3222  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCcccccCCcceeee--c-CCC------HHHHHHHHhcccEEEcCC
Q 012647          362 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSF--T-GLN------KAQSDNMTNKWHVYMTKD  431 (459)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~g~f~~--~-~l~------~~~~~~ll~~~gI~v~~g  431 (459)
                               ...++.+++-++|.+.|+ ++. .| .+..+.-.|-++..  . +-+      ..+...+++ +||.+.+.
T Consensus       349 ---------~l~~~~~~~G~~l~~~L~-~l~~~~-~v~~vrG~Gl~~gvel~~~~~~~~~~~~~i~~~~~~-~Gll~~~~  416 (453)
T PRK06943        349 ---------DVLARNARKSARLRAALA-PLAAHP-QVRHLRQRGTIFAFDVALDGDAARTFSRRFFEAALE-RELLLRPI  416 (453)
T ss_pred             ---------CHHHHHHHHHHHHHHHHH-HHhcCC-CEEeEeccccEEEEEEccCCCcchHHHHHHHHHHHH-CCcEEEec
Confidence                     233445555566666665 441 11 12223333333211  1 111      123455555 69999886


Q ss_pred             C---cEE--EccCChhhHHHHHHHHHHHHhhc
Q 012647          432 G---RIS--LAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       432 g---Ris--~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      |   ||+  +.. +++++++++++|.++++++
T Consensus       417 g~~l~~~Ppl~i-t~~eid~~~~~l~~al~~~  447 (453)
T PRK06943        417 GTTVYLMPPYVL-DDDEIAWLAERTRATLDAT  447 (453)
T ss_pred             CCEEEEeCCCcC-CHHHHHHHHHHHHHHHHHH
Confidence            5   676  333 9999999999999998764

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.64  E-value=1.8e-13  Score=136.90  Aligned_cols=342  Identities=9%  Similarity=0.021  Sum_probs=188.6

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCC--CCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE--YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~--Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...+|+..|..-...++.  +|.|.+++.+.+++.....  +....-..++.+.+++....      .-+.+.+  +++
T Consensus        42 G~~ylD~~~g~~~~~lGh~--~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~------~~~~v~f--~~S  111 (428)
T PRK07986         42 GRRLVDGMSSWWAAIHGYN--HPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLVAMTPQ------PLECVFL--ADS  111 (428)
T ss_pred             CCEEEEcchhHHhhcCCCC--CHHHHHHHHHHHhhcCCccccccCCHHHHHHHHHHHhhCCC------CcCEEEE--eCC
Confidence            4578898887542233443  6889999988886521111  11222223344444443211      1257888  999


Q ss_pred             chhHHHHHHHHHHHh-----CCCCEEEEcCCCCcchHHHhh-hCCC-------------CeeeeeeecCC---CC-CCCH
Q 012647          160 GTGSLRLAAALIERY-----FPGAKVLISSPTWGNHKNIFN-DARV-------------PWSEYRYYDPK---TV-GLDF  216 (459)
Q Consensus       160 gt~a~~l~~~~~~~~-----~~gd~Vlv~~p~y~~~~~~~~-~~G~-------------~v~~v~~~~~~---~~-~~d~  216 (459)
                      |++|++.+.++...+     ....+|+....+|.+...... ..+-             .+..+|.....   .+ .-|+
T Consensus       112 GsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~  191 (428)
T PRK07986        112 GSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDI  191 (428)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHH
Confidence            999999998887765     234689999998876432211 1110             11222221000   00 1256


Q ss_pred             HHHHHHHHcCCCCcEEEEeCC-CCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC
Q 012647          217 EGMIADIKAAPGGSFILLHGC-AHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM  294 (459)
Q Consensus       217 e~l~~~i~~~~~~~~~ii~~~-p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~  294 (459)
                      +.+++.++..+++...+++.. ++.-.|. .++++.+++|.++|++||+++|+||++.+++..+   ..+.... .+..+
T Consensus       192 ~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG---~~fa~~~-~gv~P  267 (428)
T PRK07986        192 APFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTG---KLFACEH-AGIAP  267 (428)
T ss_pred             HHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCC---Ceeeecc-cCCCC
Confidence            778888865444555555544 2555565 4567889999999999999999999987764321   1111111 12223


Q ss_pred             eEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHH-h-hccccccCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012647          295 ELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLK-R-LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEM  371 (459)
Q Consensus       295 ~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~  371 (459)
                      +++   .++|.++ .| +.+|.+++   +++..+.+..... . ....++. .+.++..++...|+-   .   ++  +.
T Consensus       268 Di~---t~gK~l~-gG~~p~~av~~---~~~i~~~~~~~~~~~~~~~~T~~-g~p~~~aaa~a~L~~---i---~~--~~  331 (428)
T PRK07986        268 DIL---CLGKALT-GGTMTLSATLT---TREVAETISNGEAGCFMHGPTFM-GNPLACAVANASLSL---L---ES--GD  331 (428)
T ss_pred             CEE---Eechhhh-CCcccCcchhc---hHHHHHHhhcCCCCccccCCCCC-cCHHHHHHHHHHHHH---H---Hh--CC
Confidence            444   5899998 67 57887755   7774444432100 0 1122332 333333344333221   0   00  12


Q ss_pred             HHHHHHHHHHHHHHHHhhccC-CCCCcccccCCcceeeecCC----CH-HHHHHHHhcccEEEcCCC---cEEEc-cCCh
Q 012647          372 MAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKDG---RISLA-GLSL  441 (459)
Q Consensus       372 ~~~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~gg---Ris~~-~~~~  441 (459)
                      ..++.+++-+++.+.|+ ++. .| .+..+.-. |.++-+.+    .. .+.+.+++ +||.+.+.|   |+.-. ..++
T Consensus       332 ~~~~~~~~g~~l~~~l~-~l~~~~-~i~~vRg~-Gl~~~ve~~~~~~~~~~~~~l~~-~Gl~~~~~g~~i~~~Ppl~it~  407 (428)
T PRK07986        332 WQQQVAAIEAQLREELA-PLRDAP-MVADVRVL-GAIGVVETTRPVNMAALQRFFVE-QGVWIRPFGKLIYLMPPYIILP  407 (428)
T ss_pred             HHHHHHHHHHHHHHHHH-HHhcCC-CEEeEecc-ceEEEEEeCCcccHHHHHHHHHH-CCcEEEecCCEEEEeCCCCCCH
Confidence            34555556666666666 541 11 01112222 33322211    12 33455555 699999877   56422 2399


Q ss_pred             hhHHHHHHHHHHHHhh
Q 012647          442 AKCEYLADAIIDSYHN  457 (459)
Q Consensus       442 e~i~~~~~~l~~~~~~  457 (459)
                      +++++++++|.+++++
T Consensus       408 ~ei~~~~~~l~~~l~~  423 (428)
T PRK07986        408 EQLQRLTAAVNRAVQD  423 (428)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999999864

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.64  E-value=6.6e-13  Score=133.03  Aligned_cols=342  Identities=11%  Similarity=0.040  Sum_probs=192.3

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCC--CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...+|+..|..-..-+..  .|.|.+++.+.+++...  ..+.......+|.+.+++.....      -+.+.+  +++
T Consensus        43 G~~ylD~~~g~~~~~lGh~--~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~------~~~v~f--~~s  112 (429)
T PRK06173         43 GRRLIDGMSSWWAALHGYN--HPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILPPS------LNKIFF--ADS  112 (429)
T ss_pred             CCEEEEccchHHhccCCCC--CHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCC------cCEEEE--eCC
Confidence            4567888777532222443  68899988888764210  11123333445555555543211      357888  999


Q ss_pred             chhHHHHHHHHHHHhC-----C-CCEEEEcCCCCcchHHH-hhhCC-------------CCeeeeeeecCCCCC-----C
Q 012647          160 GTGSLRLAAALIERYF-----P-GAKVLISSPTWGNHKNI-FNDAR-------------VPWSEYRYYDPKTVG-----L  214 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~-----~-gd~Vlv~~p~y~~~~~~-~~~~G-------------~~v~~v~~~~~~~~~-----~  214 (459)
                      |++|++.+.++...+.     + ..+|+....+|.+.... +...|             ..+..+|.... .+.     -
T Consensus       113 GseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~  191 (429)
T PRK06173        113 GSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSI-KFGEEWNDE  191 (429)
T ss_pred             chHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCc-ccchhHHHH
Confidence            9999999988877652     3 35788999888764211 11111             01222332100 010     1


Q ss_pred             CHHHHHHHHHcCCCCcEEEEeCCC-CCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc
Q 012647          215 DFEGMIADIKAAPGGSFILLHGCA-HNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR  292 (459)
Q Consensus       215 d~e~l~~~i~~~~~~~~~ii~~~p-~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~  292 (459)
                      +++.+++.+...+++...+|+... +.-.|.. ++++-+++|.++|++||+++|+||++.+++..+   ..+.... .+.
T Consensus       192 ~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG---~~~a~~~-~gv  267 (429)
T PRK06173        192 AIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTG---KLFALEH-AGV  267 (429)
T ss_pred             HHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCC---cchHHHh-cCC
Confidence            466677777644445666666553 6666766 788889999999999999999999987764322   2222222 222


Q ss_pred             CCeEEEEEcCCcCcccCCC-CcceEEEEeCChhHHHHHHHHHH--hhccccccCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012647          293 GMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARVKSQLK--RLARPMYSNPPVHGARIVANVVGNPALFDEWKAEM  369 (459)
Q Consensus       293 ~~~~i~~~S~SK~~~~~G~-RiG~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~  369 (459)
                      .++++   +|+|.++ .|+ .++.+++   +++..+.+.....  .....++. .+.++..++...|+   +.   ++  
T Consensus       268 ~PDiv---~~gK~l~-gG~~p~~a~~~---~~~i~~~~~~~~~~~~~~~~T~~-g~p~~~aaa~a~l~---~i---~~--  331 (429)
T PRK06173        268 VPDIM---CIGKALT-GGYLTLSATIT---TEAIAQTICSGEAKCFMHGPTFM-ANPLACAIAAESIR---LL---LE--  331 (429)
T ss_pred             CCCEE---Eeehhhh-CCccccceEEe---cHHHHHHHhcCCCCccccCCCCC-cCHHHHHHHHHHHH---HH---Hh--
Confidence            34434   3899997 673 6777755   7774444322100  01112222 23333333333321   10   00  


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcc-CCCCCcccccCCccee-eecCC--CH-HHHHHHHhcccEEEcCCC---cEEEcc-CC
Q 012647          370 EMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFILRQIGMF-SFTGL--NK-AQSDNMTNKWHVYMTKDG---RISLAG-LS  440 (459)
Q Consensus       370 ~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~g~f-~~~~l--~~-~~~~~ll~~~gI~v~~gg---Ris~~~-~~  440 (459)
                      +...++.+++-++|.+.|+ ++ +.|. +..+...|-+. +.++-  .. ...+.|++ +||.+.+.|   ||.-.- ++
T Consensus       332 ~~~~~~~~~~g~~l~~~L~-~~~~~~~-v~~vRg~Gl~~~iel~~~~~~~~i~~~l~e-~Gi~v~~~g~~l~~~Ppl~it  408 (429)
T PRK06173        332 SPWQQNIQRIEAQLKQELA-PAAEFDS-VAEVRVLGAIGVVEMKEPVNMATLQPRFVE-HGIWVRPFGKLVYIMPPFIIS  408 (429)
T ss_pred             CCHHHHHHHHHHHHHHHHH-HhhcCCC-eeeeeccceEEEEEeCCcccHHHHHHHHHH-CCeEEEecCCEEEEeCCccCC
Confidence            1235566666677777776 54 2110 11122233222 11221  22 34555555 599998876   775432 38


Q ss_pred             hhhHHHHHHHHHHHHhh
Q 012647          441 LAKCEYLADAIIDSYHN  457 (459)
Q Consensus       441 ~e~i~~~~~~l~~~~~~  457 (459)
                      ++++++++++|.+++.+
T Consensus       409 ~~ei~~~~~~l~~~l~~  425 (429)
T PRK06173        409 PDELSQLTSGLLRVLKQ  425 (429)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999875

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.63  E-value=2.7e-13  Score=136.45  Aligned_cols=343  Identities=12%  Similarity=0.066  Sum_probs=191.1

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CCCC-CCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEY-LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y-~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...+|+..|..-...++.  .|.|.+++++.+++.. ...+ .+..-..++.+.+++.....      -+.+.+  +++
T Consensus        45 G~~ylD~~~g~~~~~lGh~--~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~------~~~v~f--~~s  114 (442)
T PRK13360         45 GRRVLDGTAGLWCVNAGHG--RPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIAEIAPGG------LNHVFF--TNS  114 (442)
T ss_pred             CCEEEECchhHHHhccCCC--CHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHHhCCCC------CCEEEE--eCC
Confidence            3578888877542222443  7889999988876421 0111 01222234444444443111      257888  999


Q ss_pred             chhHHHHHHHHHHHhC-----C-CCEEEEcCCCCcchHHH-hhhCC------------CCeeeeeeecC-C--CCCC---
Q 012647          160 GTGSLRLAAALIERYF-----P-GAKVLISSPTWGNHKNI-FNDAR------------VPWSEYRYYDP-K--TVGL---  214 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~-----~-gd~Vlv~~p~y~~~~~~-~~~~G------------~~v~~v~~~~~-~--~~~~---  214 (459)
                      |++|++.+.++...+.     + ..+|+....+|.+.... +...|            ..+..+|.... .  .+..   
T Consensus       115 GseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  194 (442)
T PRK13360        115 GSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQP  194 (442)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChH
Confidence            9999999988877652     2 35899999888765321 11111            11223333100 0  0111   


Q ss_pred             -----CHHHHHHHHHcC-CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHH
Q 012647          215 -----DFEGMIADIKAA-PGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR  287 (459)
Q Consensus       215 -----d~e~l~~~i~~~-~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~  287 (459)
                           .++.+++.+... +++..++++...+...|.. .+++-+++|.++|++||+++|+||++.+++-.+   ..+...
T Consensus       195 ~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG---~~~a~~  271 (442)
T PRK13360        195 EHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLG---APFAAQ  271 (442)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCc---cchhhh
Confidence                 145777777632 2355666666666666766 567779999999999999999999987875322   122222


Q ss_pred             HHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHH----hhccccccCCchHHHHHHHHHhCChhhH
Q 012647          288 LFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLK----RLARPMYSNPPVHGARIVANVVGNPALF  362 (459)
Q Consensus       288 ~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~L~~~~~~  362 (459)
                      . .+..++++   +|+|.++ .| +.+|.+++   +++..+.+...-.    .....++ +.+.++..++...|+   ..
T Consensus       272 ~-~gv~PDiv---t~gK~l~-gG~~P~gav~~---~~~i~~~~~~~~~~~~~~~~~~T~-~g~pl~~aaa~a~L~---~l  339 (442)
T PRK13360        272 Y-FGVTPDLL---TCAKGLT-NGAIPMGAVFV---SSEIHDAFMQGPEAGIEFFHGYTY-SGHPLACAAALATLD---LY  339 (442)
T ss_pred             h-cCCCCcee---eeeeccc-cCccceEEEEE---cHHHHHHhhcCCccccccccCCCC-CCCHHHHHHHHHHHH---HH
Confidence            2 22233433   7899998 56 67899765   7774444332100    0112233 233333333333331   11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCcccccCCcceee---ecCC----C---HHHHHHHHhcccEEEcCC
Q 012647          363 DEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFS---FTGL----N---KAQSDNMTNKWHVYMTKD  431 (459)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~g~f~---~~~l----~---~~~~~~ll~~~gI~v~~g  431 (459)
                         ++  +...++.+++-+++.+.|+ ++. .|. +..+.-. |++.   +...    .   .+...++++ +||.+.++
T Consensus       340 ---~~--~~l~~~~~~~g~~l~~~l~-~l~~~~~-v~~vrG~-Gl~~~~~l~~~~~~~~~~~~~~~~~l~~-~Gvl~~~~  410 (442)
T PRK13360        340 ---ER--EGLLTRAARLAPYWEDALH-SLRDAPH-VIDIRNL-GLVGAVELAPRDGKPGKRAYEVFLKCFE-KGLMIRYT  410 (442)
T ss_pred             ---Hh--CCHHHHHHHHHHHHHHHHH-HhhcCCC-eeeeecc-ceEEEEEEecCCCCcchhHHHHHHHHHH-CCcEEEec
Confidence               00  1344555666666667776 542 110 1111112 2221   1111    1   134556665 59999877


Q ss_pred             C---cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          432 G---RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       432 g---Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                      |   ||+... .++++|++++++|.++++++
T Consensus       411 ~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~  441 (442)
T PRK13360        411 GDILALSPPLIIEEAQIDELFDILAQALKET  441 (442)
T ss_pred             CCEEEEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence            6   777432 28999999999999999865

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.63  E-value=4.2e-13  Score=130.10  Aligned_cols=278  Identities=16%  Similarity=0.130  Sum_probs=179.9

Q ss_pred             CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----hhhCCCC
Q 012647          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARVP  200 (459)
Q Consensus       125 ~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~G~~  200 (459)
                      ......|.++++.+-.+        ++.+.  +++|..|+..+  ++..+.+||+|++++..|.+-...    ++..|++
T Consensus        62 nPT~~~lE~~~a~LEg~--------~~~~a--fsSGmaAI~~~--~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~  129 (396)
T COG0626          62 NPTRDALEEALAELEGG--------EDAFA--FSSGMAAISTA--LLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVE  129 (396)
T ss_pred             CccHHHHHHHHHHhhCC--------CcEEE--ecCcHHHHHHH--HHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeE
Confidence            34556788888888422        44555  79999999998  666688999999999988765444    4567888


Q ss_pred             eeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCC
Q 012647          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (459)
Q Consensus       201 v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~  280 (459)
                      +.+++.       -|.+.+++++.+  +++++|++-+|.|||-.+   .++.+|+++|+++|+++++|+.|....+-.  
T Consensus       130 ~~~~d~-------~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v---~DI~~i~~~A~~~g~~vvVDNTfatP~~q~--  195 (396)
T COG0626         130 VTFVDP-------GDDEALEAAIKE--PNTKLVFLETPSNPLLEV---PDIPAIARLAKAYGALVVVDNTFATPVLQR--  195 (396)
T ss_pred             EEEECC-------CChHHHHHHhcc--cCceEEEEeCCCCccccc---ccHHHHHHHHHhcCCEEEEECCcccccccC--
Confidence            877754       144667777763  379999999999999999   889999999999999999999987755421  


Q ss_pred             CChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChh
Q 012647          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPA  360 (459)
Q Consensus       281 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  360 (459)
                          ++     ..+.+|++.|.+|.++-.+-=+|.++ ++++++..+.+......   ..........+..+..-|+   
T Consensus       196 ----PL-----~~GaDIVvhSaTKyl~GHsDvl~G~v-~~~~~~~~~~~~~~~~~---~~G~~l~p~dA~l~lRGlk---  259 (396)
T COG0626         196 ----PL-----ELGADIVVHSATKYLGGHSDVLGGVV-LTPNEELYELLFFAQRA---NTGAVLSPFDAWLLLRGLR---  259 (396)
T ss_pred             ----hh-----hcCCCEEEEeccccccCCcceeeeEE-ecChHHHHHHHHHHHHh---hcCCCCCHHHHHHHHhccc---
Confidence                11     12367999999999986665566642 34555534333222221   1111233333333332222   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcc-cccC-----------------CcceeeecCCCHHHHHHHHh
Q 012647          361 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWS-FILR-----------------QIGMFSFTGLNKAQSDNMTN  422 (459)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~~~~-----------------~~g~f~~~~l~~~~~~~ll~  422 (459)
                             .+.-+.++..++...+.+.|+ +.+.   ++ ++.|                 -||+|.|.=-+.+.+.++++
T Consensus       260 -------TL~~Rm~~~~~nA~~IA~~L~-~~p~---V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~~~~~~f~~  328 (396)
T COG0626         260 -------TLALRMERHNENALKIAEFLA-DHPK---VKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNEEAAKKFLD  328 (396)
T ss_pred             -------hHHHHHHHHHHHHHHHHHHHh-cCCC---eEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCChHHHHHHHH
Confidence                   244556666777788888887 5431   11 1111                 46677664112144555554


Q ss_pred             cccE---EEcCC-------------------------C------cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          423 KWHV---YMTKD-------------------------G------RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       423 ~~gI---~v~~g-------------------------g------Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      .-.+   ...-|                         |      |+|++-   |+++.+++-|+++++.+
T Consensus       329 ~L~l~~~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGl---Ed~eDLi~Dl~~Al~~~  395 (396)
T COG0626         329 SLKLFKLAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVGL---EDVEDLIADLEQALAKA  395 (396)
T ss_pred             hCCccEEeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEecC---CCHHHHHHHHHHHHHhh
Confidence            4333   22222                         1      999976   77888888888888765

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.63  E-value=3.3e-13  Score=132.79  Aligned_cols=213  Identities=13%  Similarity=0.121  Sum_probs=137.3

Q ss_pred             CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcch----HHHhhhCCCC
Q 012647          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH----KNIFNDARVP  200 (459)
Q Consensus       125 ~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~----~~~~~~~G~~  200 (459)
                      .....+|.+.++++...        +..+.  +++|+.|+.++  +.+.+.+||+|+++.+.|...    ...+...|++
T Consensus        63 ~P~~~~lE~~la~leg~--------~~av~--~sSG~aAi~~a--l~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~  130 (384)
T PRK06434         63 NPTVQAFEEKYAVLENA--------EHALS--FSSGMGAITSA--ILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIH  130 (384)
T ss_pred             ChhHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH--HHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcE
Confidence            44567888889988643        34555  79999999998  555688999999998766543    3556678999


Q ss_pred             eeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCC
Q 012647          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (459)
Q Consensus       201 v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~  280 (459)
                      ++.++.++.+++.         ++.  ++++++++..|.|||+.+   .++++|+++|++++  +++|.++......   
T Consensus       131 v~fvd~~~~~~~~---------l~~--~~tklv~~e~~snpt~~v---~Di~~I~~la~~~~--lvVD~t~~s~~~~---  191 (384)
T PRK06434        131 VDYIDTDRLNSLD---------FDP--SNYDLIYAESITNPTLKV---PDIKNVSSFCHEND--VIVDATFASPYNQ---  191 (384)
T ss_pred             EEEECCCChhhee---------ecC--CCeeEEEEEcCCCCCcee---ecHHHHHHHHHHcC--eEEECCCCCcccC---
Confidence            9999874322222         121  367888889999999988   78999999999998  4569996322211   


Q ss_pred             CChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChh
Q 012647          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPA  360 (459)
Q Consensus       281 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  360 (459)
                       .  ++     ...-++++.|.+|.++-+|--+|.++ ++.+++..+++......    .....+.+.+.++..-|+   
T Consensus       192 -~--pl-----~~gaDivv~S~tK~i~G~~d~~gG~v-v~~~~~~~~~~~~~~~~----~G~~~~~~~A~l~~~gL~---  255 (384)
T PRK06434        192 -N--PL-----DLGADVVIHSATKYISGHSDVVMGVA-GTNNKSIFNNLVERRKT----LGSNPDPIQAYLALRGLK---  255 (384)
T ss_pred             -C--ch-----hcCCCEEEeecccccCCCCCceEEEE-ecCcHHHHHHHHHHHHh----cCCCCCHHHHHHHHhCCC---
Confidence             0  11     12357888999999975553356654 35666654444422111    111223332222222222   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          361 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                             .+..+.++.+++...+.+.|+ ..+
T Consensus       256 -------tL~~R~~r~~~~a~~~a~~L~-~~p  279 (384)
T PRK06434        256 -------TLGLRMEKHNKNGMELARFLR-DSK  279 (384)
T ss_pred             -------cHHHHHHHHHHHHHHHHHHHH-cCC
Confidence                   245666677777778888887 653

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.63  E-value=1e-12  Score=132.99  Aligned_cols=342  Identities=9%  Similarity=0.054  Sum_probs=192.8

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CC--CCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NK--EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~--~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      +...+|+..|..-...++.  +|.|.+++.+.+++.. ..  .| ......+|.+.+++.....      .+.+.+  ++
T Consensus        46 G~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~ql~~l~~~~~~~~-~~~~~~~lae~L~~~~p~~------~~~v~f--~~  114 (466)
T PRK07030         46 GKRYLDAVSSWWVNVFGHA--NPRINQRIKDQVDQLEHVILAGF-SHEPVIELSERLVKITPPG------LSRCFY--AD  114 (466)
T ss_pred             CCEEEEcchhHHhhcCCCC--CHHHHHHHHHHHHhcCCcccccc-CCHHHHHHHHHHHHhCCCC------cCEEEE--eC
Confidence            3578888877542233443  6889999888876421 01  22 2223334555555442111      357888  99


Q ss_pred             cchhHHHHHHHHHHHh----C-C-CCEEEEcCCCCcchHHHhhhC-CC------------CeeeeeeecCC--CCCC---
Q 012647          159 SGTGSLRLAAALIERY----F-P-GAKVLISSPTWGNHKNIFNDA-RV------------PWSEYRYYDPK--TVGL---  214 (459)
Q Consensus       159 ggt~a~~l~~~~~~~~----~-~-gd~Vlv~~p~y~~~~~~~~~~-G~------------~v~~v~~~~~~--~~~~---  214 (459)
                      +|++|++.+.++...+    . + ..+|+...-+|.+........ |.            .+..+|.....  ..+.   
T Consensus       115 sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~  194 (466)
T PRK07030        115 NGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWE  194 (466)
T ss_pred             CcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHH
Confidence            9999999998887654    1 2 367999998887653222211 11            12233321100  0011   


Q ss_pred             -----CHHHHHHHHHcCCCCcEEEEeCC-CCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHH
Q 012647          215 -----DFEGMIADIKAAPGGSFILLHGC-AHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR  287 (459)
Q Consensus       215 -----d~e~l~~~i~~~~~~~~~ii~~~-p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~  287 (459)
                           +++.+++.+...++....+|+.. .+...|. .++++-+++|.++|++||+++|.||+..+++-.+   ..+...
T Consensus       195 ~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG---~~~a~~  271 (466)
T PRK07030        195 EHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTG---TMFACE  271 (466)
T ss_pred             HHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccc---cchHHH
Confidence                 25666777765444556666554 3555576 5677889999999999999999999988886321   223332


Q ss_pred             HHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHH---h-hccccccCCchHHHHHHHHHhCChhhH
Q 012647          288 LFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLK---R-LARPMYSNPPVHGARIVANVVGNPALF  362 (459)
Q Consensus       288 ~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~L~~~~~~  362 (459)
                      . .+-.++++   .++|.++ .| +.+|.+++   +++..+.+.....   . ....++ +.+.++..++...|+   +.
T Consensus       272 ~-~gv~PDiv---~~gKgl~-gG~~Pi~av~~---~~ei~~~~~~~~~~~~~~~h~~T~-~gnpla~aaa~a~L~---~i  339 (466)
T PRK07030        272 Q-AGIRPDFL---CLSKALT-GGYLPLAAVLT---TDTVYQAFYDDYPTLRAFLHSHSY-TGNPLACAAALATLD---IF  339 (466)
T ss_pred             h-cCCCCCEE---eeehhcc-CCcccceEEEe---cHHHHHHHhcccccccccccCCCC-CCCHHHHHHHHHHHH---HH
Confidence            2 23345555   4699998 78 48999866   7774444422100   1 122333 333444444433332   10


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCcccccCCcceeeecCC------------C----HHHHHHHHhccc
Q 012647          363 DEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFTGL------------N----KAQSDNMTNKWH  425 (459)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~g~f~~~~l------------~----~~~~~~ll~~~g  425 (459)
                         ++  +...++.+++-++|.+.|+ ++. .|. +..+... |+++-+.+            +    ..+.+++++ +|
T Consensus       340 ---~~--~~l~~~~~~~G~~l~~~L~-~l~~~~~-v~~vrG~-Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~-~G  410 (466)
T PRK07030        340 ---EQ--DNVIENNRALARRMAEATA-HLADHPH-VAEVRQT-GMILAIEMVQDKASKTPYPWQERRGLKVYQHALE-RG  410 (466)
T ss_pred             ---Hh--cCHHHHHHHHHHHHHHHHH-HHhcCCC-EEEeEec-eeEEEEEeccCccccccCcchhHHHHHHHHHHHH-CC
Confidence               00  1334555556666666665 541 110 1112223 33322111            0    123445555 69


Q ss_pred             EEEcCCC---cEEEc-cCChhhHHHHHHHHHHHHhhc
Q 012647          426 VYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       426 I~v~~gg---Ris~~-~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      |.+.+.|   |+..+ ..++++++++++++.++++++
T Consensus       411 vl~~~~g~~i~~~Ppl~it~~eid~~~~~l~~al~~~  447 (466)
T PRK07030        411 ALLRPLGSVVYFLPPYVITPEQIDFLAEVASEGIDIA  447 (466)
T ss_pred             eEEEecCCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence            9998865   55422 239999999999999999874

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.62  E-value=7e-13  Score=134.04  Aligned_cols=336  Identities=12%  Similarity=0.043  Sum_probs=187.0

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCC-CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      +...+|+..+.+ ...+.  -+|.|.+++.+.++.... ....+.....+|.+.+++.....      .+.+.+  +++|
T Consensus        71 G~~ylD~~g~~~-~~lGh--~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~lae~L~~~~p~~------~~~v~f--~~sG  139 (459)
T PRK06082         71 GKKYMDFHGNNV-HQLGY--GHPHVIEKVKEQMAKLPFSPRRFTNETAIECAEKLTEIAGGE------LNRVLF--APGG  139 (459)
T ss_pred             CCEEEEcccHhh-cccCC--CCHHHHHHHHHHHHhCCCccCccCCHHHHHHHHHHHHhCCCC------CCEEEE--CCCc
Confidence            356788863322 22243  378899999888864210 11113333445555555553211      257888  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH-HhhhCCC------------CeeeeeeecCCC--CC-C------CHHH
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKN-IFNDARV------------PWSEYRYYDPKT--VG-L------DFEG  218 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~-~~~~~G~------------~v~~v~~~~~~~--~~-~------d~e~  218 (459)
                      ++|++.+.++...+....+|+....+|.+... .+...|.            .+..+|......  +. .      +++.
T Consensus       140 seAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (459)
T PRK06082        140 TSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADY  219 (459)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHH
Confidence            99999998887766555889999988876532 2221111            122232210000  00 0      1345


Q ss_pred             HHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012647          219 MIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (459)
Q Consensus       219 l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (459)
                      +++.+... +....+|+-...+..+..++++-+++|.++|++||+++|.||+..+++-.+   ..+.... .+..++++ 
T Consensus       220 l~~~i~~~-~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG---~~fa~e~-~gv~PDiv-  293 (459)
T PRK06082        220 LEYVIEKE-GGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTG---EWFTHQA-YGIEPDIL-  293 (459)
T ss_pred             HHHHHhcC-CCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---hhhHhHh-hCCCCCEE-
Confidence            67777642 345566666666655567888899999999999999999999988775321   2222222 23334544 


Q ss_pred             EEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHh-hccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012647          299 AQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKR-LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI  376 (459)
Q Consensus       299 ~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~  376 (459)
                        .++|.++ .| +.+|.+++   +++    +...... ....++ +.+.++..++...|+   ..   ++  +...++.
T Consensus       294 --~~gKgl~-gG~~P~~av~~---~~~----i~~~~~~~~~~~T~-~gnpl~~aaa~a~L~---~l---~~--~~l~~~~  354 (459)
T PRK06082        294 --CIGKGLG-GGLVPIAAMIT---KDK----YNTAAQISLGHYTH-EKSPLGCAAALATIE---VI---EQ--EGLLEKV  354 (459)
T ss_pred             --Eeccccc-CCCCcceEEEE---cHH----HHhhccCCCCCCCC-CcCHHHHHHHHHHHH---HH---Hh--cCHHHHH
Confidence              3899999 67 48898865   666    2222111 111233 333333333333321   10   00  1234455


Q ss_pred             HHHHHHHHHHHhhcc----CCCCCcccccCCcceeee--c-CC-----C----HHHHHHHHhcccEEEcCC-C---cEEE
Q 012647          377 KNVRQKLFDSLSAKD----KSGKDWSFILRQIGMFSF--T-GL-----N----KAQSDNMTNKWHVYMTKD-G---RISL  436 (459)
Q Consensus       377 ~~~~~~l~~~L~~~~----g~~~~~~~~~~~~g~f~~--~-~l-----~----~~~~~~ll~~~gI~v~~g-g---Ris~  436 (459)
                      +++-++|.+.|+ ++    +.   +..+...|.++.+  . +.     +    ..+...+++ +||.+.+. +   |++.
T Consensus       355 ~~~g~~l~~~L~-~l~~~~~~---i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~~~~~i~~~P  429 (459)
T PRK06082        355 KADSQFMRERLL-EMKAKYPL---IGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLN-NGLSFKVSQGNVIQLSP  429 (459)
T ss_pred             HHHHHHHHHHHH-HHHhhCCC---eeeeeeccceeEEEEccCccccCccHHHHHHHHHHHHh-CCCEEEecCCCEEEEeC
Confidence            555555555555 43    21   1122333333321  1 10     1    123445555 69998775 3   6653


Q ss_pred             c-cCChhhHHHHHHHHHHHHhhc
Q 012647          437 A-GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       437 ~-~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      . ..++++++++++++.+++.++
T Consensus       430 pl~it~~eid~~~~~l~~~l~~~  452 (459)
T PRK06082        430 PLIITREELTQALAILEEAIAKI  452 (459)
T ss_pred             CCccCHHHHHHHHHHHHHHHHHH
Confidence            3 238999999999999988753

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.62  E-value=8.7e-14  Score=124.92  Aligned_cols=317  Identities=12%  Similarity=0.055  Sum_probs=190.8

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcC--------CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEE
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--------ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVAT  154 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--------~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (459)
                      .++++|....|+   +.. ..|+|.++.++++++.        ...+|  ..-...|...||++ .++      ++-|+ 
T Consensus        67 k~ilnFcaNnYL---GLs-shPeii~a~~~aleeyGaGlssvrfIcGt--q~iHk~LE~kiAqf-h~r------ED~il-  132 (417)
T KOG1359|consen   67 KKILNFCANNYL---GLS-SHPEIINAGQKALEEYGAGLSSVRFICGT--QDIHKLLESKIAQF-HGR------EDTIL-  132 (417)
T ss_pred             cceeeecccccc---ccc-CChHHHHHHHHHHHHhCCCccceeEEecc--hHHHHHHHHHHHHH-hCC------CceEE-
Confidence            478899988874   333 2688888888887541        00112  12235677788888 333      34444 


Q ss_pred             eecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC-CCCcEEE
Q 012647          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA-PGGSFIL  233 (459)
Q Consensus       155 ~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~-~~~~~~i  233 (459)
                        ...+-.|+.-+  +.+.+.|.|.|+-.+-.+.....-++.+. +.          ..+|+-.++..+.+. +-+-+++
T Consensus       133 --ypscfdANag~--feail~pedAvfSDeLNhASIIdGirLck-ry----------~h~dv~~l~~~l~~a~k~r~klv  197 (417)
T KOG1359|consen  133 --YPSCFDANAGA--FEAILTPEDAVFSDELNHASIIDGIRLCK-RY----------RHVDVFDLEHCLISACKMRLKLV  197 (417)
T ss_pred             --eccccccchHH--HHHhcChhhhhhccccccchhhhhhHHHh-hh----------ccchhHHHHHHHHHhhhheEEEE
Confidence              45555555554  44457788888888777776666555553 11          124555555444331 1255677


Q ss_pred             EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEEcCCcCcc-cCCC
Q 012647          234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLG-LYAE  311 (459)
Q Consensus       234 i~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~-~~G~  311 (459)
                      +....-.-.|.+   .++++|.+++++||.++++||++..+.++.   .......... .++.++...+++|.+| ..| 
T Consensus       198 ~TDg~FSMDGdi---aPl~ei~~La~kYgaLlfiDecHaTgf~G~---tGrGt~E~~~vm~~vdiinsTLgKAlGga~G-  270 (417)
T KOG1359|consen  198 VTDGVFSMDGDI---APLEEISQLAKKYGALLFIDECHATGFFGE---TGRGTAEEFGVMGDVDIINSTLGKALGGASG-  270 (417)
T ss_pred             EecceeccCCCc---ccHHHHHHHHHhcCcEEEEeecccceeecC---CCCChHHHhCCCCcceehhhhhhhhhcCCCC-
Confidence            766666777888   888899999999999999999977665542   1222223322 3456788899999997 444 


Q ss_pred             CcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHH---HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012647          312 RIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIV---ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  388 (459)
Q Consensus       312 RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  388 (459)
                        ||..+   |..++..+.++-+.+..... -||.+...++   ..++.+           .+...+.+.+.+.+++.++
T Consensus       271 --Gyttg---p~~li~llrqr~RpylFSns-lppavV~~a~ka~dllm~s-----------~~~i~~~~a~~qrfr~~me  333 (417)
T KOG1359|consen  271 --GYTTG---PKPLISLLRQRSRPYLFSNS-LPPAVVGMAAKAYDLLMVS-----------SKEIQSRQANTQRFREFME  333 (417)
T ss_pred             --CCccC---ChhHHHHHHhcCCceeecCC-CChhhhhhhHHHHHHHHhh-----------HHHHHHHHHHHHHHHHHHH
Confidence              88755   88855555544433322222 2333222222   111211           2334455556666777776


Q ss_pred             hccCCCCCcccccCCccee-eecCC---CHHHHHHHHhcccEEEc-------CCC----cEEEccC-ChhhHHHHHHHHH
Q 012647          389 AKDKSGKDWSFILRQIGMF-SFTGL---NKAQSDNMTNKWHVYMT-------KDG----RISLAGL-SLAKCEYLADAII  452 (459)
Q Consensus       389 ~~~g~~~~~~~~~~~~g~f-~~~~l---~~~~~~~ll~~~gI~v~-------~gg----Ris~~~~-~~e~i~~~~~~l~  452 (459)
                       ..|    +.+......+. +.+|.   .....++|++. ||+|.       |-|    |+.++.. ++|+|+++++++.
T Consensus       334 -~aG----ftIsg~~hPI~pv~lGda~lA~~~ad~lLk~-Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~  407 (417)
T KOG1359|consen  334 -AAG----FTISGASHPICPVMLGDARLASKMADELLKR-GIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFS  407 (417)
T ss_pred             -hcC----ceecCCCCCccceecccHHHHHHHHHHHHhc-CceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHH
Confidence             666    34433222222 34443   34567889986 99863       334    6555543 9999999999999


Q ss_pred             HHHhhc
Q 012647          453 DSYHNV  458 (459)
Q Consensus       453 ~~~~~~  458 (459)
                      ++.+.+
T Consensus       408 ~vgr~~  413 (417)
T KOG1359|consen  408 EVGRFL  413 (417)
T ss_pred             HHHHhh
Confidence            988754

>PRK05965 hypothetical protein; Provisional

Probab=99.62  E-value=1.4e-12  Score=131.91  Aligned_cols=340  Identities=11%  Similarity=0.063  Sum_probs=192.3

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CC---CCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeec
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NK---EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~---~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (459)
                      +...||+..|..-..-+..  +|+|.+++.+.++... ..   .+ +.....+|-+.+++.....      -+.+.+  +
T Consensus        45 G~~ylD~~~g~~~~~lGh~--~p~i~~Ai~~q~~~~~~~~~~~~~-~~~~~~~lae~L~~~~p~~------~~~v~f--~  113 (459)
T PRK05965         45 GHQLLDAFAGLWCVNVGYG--QESIVEAAAEQMRELPYATGYFHF-GSEPAIRLAAKLAERAPGS------LNHVYF--T  113 (459)
T ss_pred             CCEEEECcccHHhccCCCC--CHHHHHHHHHHHHhcCCccccccc-CCHHHHHHHHHHHhhCCCC------cCEEEE--e
Confidence            3578898877542233443  7889999988886421 01   11 1222234555555442111      357888  9


Q ss_pred             ccchhHHHHHHHHHHHhC-----C-CCEEEEcCCCCcchHHHh-hh---------CCC---CeeeeeeecC--CCCCCC-
Q 012647          158 LSGTGSLRLAAALIERYF-----P-GAKVLISSPTWGNHKNIF-ND---------ARV---PWSEYRYYDP--KTVGLD-  215 (459)
Q Consensus       158 ~ggt~a~~l~~~~~~~~~-----~-gd~Vlv~~p~y~~~~~~~-~~---------~G~---~v~~v~~~~~--~~~~~d-  215 (459)
                      ++|++|++.+.++.+.+.     + ..+|+....+|.+..... ..         .|.   .+..+|....  ..+.-| 
T Consensus       114 ~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (459)
T PRK05965        114 LGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDP  193 (459)
T ss_pred             CChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCCh
Confidence            999999999988876651     2 367999999987653211 11         110   1122322100  001123 


Q ss_pred             -------HHHHHHHHHcCC-CCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH
Q 012647          216 -------FEGMIADIKAAP-GGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (459)
Q Consensus       216 -------~e~l~~~i~~~~-~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~  286 (459)
                             ++.+++.+.... +....+|+...+...|.+ ++++-+++|.++|++||+++|.||+..+|+-.+   ..+..
T Consensus       194 ~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG---~~~a~  270 (459)
T PRK05965        194 QAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTG---PLFAC  270 (459)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCc---hhhhH
Confidence                   256777776422 345666666666667764 677889999999999999999999998886322   22333


Q ss_pred             HHHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHH----hhccccccCCchHHHHHHHHH---hCC
Q 012647          287 RLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLK----RLARPMYSNPPVHGARIVANV---VGN  358 (459)
Q Consensus       287 ~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~---L~~  358 (459)
                      .. .+..++++   .++|.++ .| +.+|.+++   +++..+.+.....    .....++ +.+.++..++...   +++
T Consensus       271 ~~-~gv~PDiv---~~gKgl~-gG~~Pi~av~~---~~~i~~~~~~~~~~~~~~~h~~T~-~gnpl~~Aaa~a~L~~l~~  341 (459)
T PRK05965        271 EA-EGVVPDLM---TVAKGLT-SGYVPMGAVLM---SDHVYQGIADGAGAAAPVGHGYTY-SAHPVSAAVGLEVLRLYHE  341 (459)
T ss_pred             hh-cCCCCCeE---Eechhhc-cCCcceeEEEE---cHHHHHHHhccccccccccccCCC-CCCHHHHHHHHHHHHHHHh
Confidence            22 23345555   5799998 78 48999876   7775444432100    0122233 3333443343333   322


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCcccccCCcceeee--c-CC------C------HHHHHHHHh
Q 012647          359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSF--T-GL------N------KAQSDNMTN  422 (459)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~g~f~~--~-~l------~------~~~~~~ll~  422 (459)
                      +           ...++.++.-++|.+.|+ ++. .| .+..+...|-++..  . +-      +      ..+...+++
T Consensus       342 ~-----------~l~~~~~~~g~~l~~~l~-~l~~~~-~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~  408 (459)
T PRK05965        342 G-----------GLLANGQKAGPRFAAGLD-ALRAHP-LVGDVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYA  408 (459)
T ss_pred             c-----------cHHHHHHHHHHHHHHHHH-hhccCC-CEEEEeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHh
Confidence            2           334555666666666666 541 11 01112223222211  1 10      0      123445555


Q ss_pred             cccEEEcCCC--cEEEc---cCChhhHHHHHHHHHHHHhhc
Q 012647          423 KWHVYMTKDG--RISLA---GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       423 ~~gI~v~~gg--Ris~~---~~~~e~i~~~~~~l~~~~~~~  458 (459)
                       +||.+.+.|  -|.+.   ..+++++++++++|.++++++
T Consensus       409 -~Gll~~~~g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~  448 (459)
T PRK05965        409 -NGLVFRAFGDGVLGFAPALCCTEGEFDLIFERTRKTLDDV  448 (459)
T ss_pred             -CCeEEEecCCcEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence             699998865  23333   238999999999999998764

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.62  E-value=8.5e-13  Score=133.00  Aligned_cols=342  Identities=12%  Similarity=0.039  Sum_probs=191.7

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-C--CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-N--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~--~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      +...+|+..|..-..-|+.  +|.|.+++.+.+++.. .  ..+ ......++.+.+++.....      .+.+.+  ++
T Consensus        48 G~~ylD~~~g~~~~~lGh~--~p~v~~ai~~ql~~l~~~~~~~~-~~~~~~~la~~L~~~~p~~------~~~v~f--~~  116 (445)
T PRK09221         48 GRKILDGTAGLWCCNAGHG--RPEIVEAVARQAATLDYAPAFQM-GHPLAFELAERLAELAPGG------LDHVFF--TN  116 (445)
T ss_pred             CCEEEEccccHhhccCCCC--CHHHHHHHHHHHHhccCcccccc-CCHHHHHHHHHHHHhCCCC------CCEEEE--eC
Confidence            3578898877542223443  7889889888875421 0  111 1222234444444442111      257888  99


Q ss_pred             cchhHHHHHHHHHHHhC-----C-CCEEEEcCCCCcchHHHhhh-CC------------CCeeeeeeec-CC--CCCC--
Q 012647          159 SGTGSLRLAAALIERYF-----P-GAKVLISSPTWGNHKNIFND-AR------------VPWSEYRYYD-PK--TVGL--  214 (459)
Q Consensus       159 ggt~a~~l~~~~~~~~~-----~-gd~Vlv~~p~y~~~~~~~~~-~G------------~~v~~v~~~~-~~--~~~~--  214 (459)
                      +|++|++.+.++...+.     + ..+|+....+|.+....... .|            ..+..+|... ..  .+..  
T Consensus       117 sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (445)
T PRK09221        117 SGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQ  196 (445)
T ss_pred             CcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCCh
Confidence            99999999988877652     1 35799999888765322111 11            1122333210 00  0111  


Q ss_pred             ------CHHHHHHHHHcCC-CCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH
Q 012647          215 ------DFEGMIADIKAAP-GGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (459)
Q Consensus       215 ------d~e~l~~~i~~~~-~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~  286 (459)
                            ..+.+++.+...+ ++...+++.......|.. .+++-+++|.++|++||+++|+||++.+++-.+   ..+..
T Consensus       197 ~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG---~~~~~  273 (445)
T PRK09221        197 PEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLG---AAFAA  273 (445)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCc---hhhHH
Confidence                  1356677776432 355666666667777875 466779999999999999999999987775321   12222


Q ss_pred             HHHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHH----HhhccccccCCchHHHHHHHHHhCChhh
Q 012647          287 RLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQL----KRLARPMYSNPPVHGARIVANVVGNPAL  361 (459)
Q Consensus       287 ~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~~~~~  361 (459)
                      .. .+..++++   +++|.++ .| +.+|.+.+   +++..+.+....    ......++ +.+.++..++...|+   .
T Consensus       274 ~~-~gv~PDi~---~~gK~l~-gG~~Pi~av~~---~~~i~~~~~~~~~~~~~~~~~~T~-~~~pl~~aaa~a~L~---~  341 (445)
T PRK09221        274 ER-FGVTPDII---TFAKGLT-NGAIPMGAVIA---SDEIYDAFMQGPEYAIEFFHGYTY-SAHPVACAAGLATLD---I  341 (445)
T ss_pred             Hh-cCCCCCEE---Eeccccc-cCcccceeeEE---cHHHHHhhccCcccccccccccCC-CcCHHHHHHHHHHHH---H
Confidence            22 22233433   7899997 55 67888755   777444443210    00112233 334444333333332   1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCcccccCCcceeeecCC------C----HHHHHHHHhcccEEEcC
Q 012647          362 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFILRQIGMFSFTGL------N----KAQSDNMTNKWHVYMTK  430 (459)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~g~f~~~~l------~----~~~~~~ll~~~gI~v~~  430 (459)
                      .   ++  +...++.+++.+++.+.|+ ++ +.|. +..+... |.+.-+.+      +    .+..+.+++ +||.+.+
T Consensus       342 i---~~--~~l~~~~~~~g~~l~~~l~-~l~~~~~-v~~vrg~-Gl~~~v~~~~~~~~~~~~~~~~~~~~~~-~Gv~~~~  412 (445)
T PRK09221        342 Y---RE--EDLFERAAELAPYFEDAVH-SLKGLPH-VIDIRNI-GLVAGIELAPRPGAPGARGYEAFMKCFE-KGLLVRY  412 (445)
T ss_pred             H---Hh--ccHHHHHHHHHHHHHHHHH-hhccCCC-EEEEecC-ceEEEEEEecccccccchHHHHHHHHHH-CCeEEee
Confidence            0   11  1345666777777777777 65 2110 1112222 22221111      1    134556655 5999988


Q ss_pred             CC---cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          431 DG---RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       431 gg---Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                      +|   ||+..- .++++|++++++|.++++++
T Consensus       413 ~~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~  444 (445)
T PRK09221        413 TGDTIALSPPLIIEKAQIDELVDALGDALRAV  444 (445)
T ss_pred             cCCEEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence            76   776432 38999999999999999876

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.62  E-value=3.9e-13  Score=134.59  Aligned_cols=333  Identities=15%  Similarity=0.095  Sum_probs=192.1

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCC-----CcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP-----IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~-----~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      .+||.+.-.++++.+.+++++.+.+++.+++.......|.-     ..-+..+++.++++....       . .++  ++
T Consensus        75 ~vinatg~v~~tNlg~s~l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~gae-------~-alv--v~  144 (454)
T TIGR00474        75 RVINATGVVLHTNLGRAPLAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGAE-------D-ALV--VN  144 (454)
T ss_pred             ceeCCCCcEEeccCCCCCCCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCCC-------c-EEE--EC
Confidence            56776544566666777779999999998885422122211     122478889999997542       2 344  57


Q ss_pred             cchhHHHHHHHHHHHhCCCCEEEEcCCCCcc------hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEE
Q 012647          159 SGTGSLRLAAALIERYFPGAKVLISSPTWGN------HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI  232 (459)
Q Consensus       159 ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~------~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~  232 (459)
                      +++.|+.++  + ..+.+||+|++++..|..      +...++..|++++.++.+    ...|++++++++++   +|++
T Consensus       145 sg~aAi~l~--l-~~l~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~----~~~~l~dle~aI~~---~T~l  214 (454)
T TIGR00474       145 NNAAAVLLA--L-NTLAKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTT----NRTHLKDYEDAITE---NTAL  214 (454)
T ss_pred             CHHHHHHHH--H-HHhCCcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCC----CCCCHHHHHHhcCc---CCEE
Confidence            888888876  3 457899999999866432      234567789999988763    13588999999976   7888


Q ss_pred             EEeCCCCCCC--CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCC---CCCCChhHHHHHHhcCCeEEEEEcCCcCcc
Q 012647          233 LLHGCAHNPT--GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASG---SLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (459)
Q Consensus       233 ii~~~p~NPT--G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (459)
                      +++.+++|++  |.. ...++++|+++|++||+++++|.+...+...   +.. ..+.+.. ....+.+++++|.+|.++
T Consensus       215 v~~~h~sN~~~~G~~-~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~-~~p~~~~-~~~~GaDiv~fSg~K~Lg  291 (454)
T TIGR00474       215 LLKVHTSNYRIVGFT-EEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLP-DEPTVQE-VIAAGVDLVTFSGDKLLG  291 (454)
T ss_pred             EEEEccCcccccCCC-CCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCC-CCccccc-HhHcCCCEEEecCccccC
Confidence            8889999996  531 1257889999999999999999863322110   000 0011111 112345689999999986


Q ss_pred             cCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHH--HHHHHHHhCChhhHHHHH-----HHHHHHHHHHHHHH
Q 012647          308 LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHG--ARIVANVVGNPALFDEWK-----AEMEMMAGRIKNVR  380 (459)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~~~~~~~~~~-----~~~~~~~~~~~~~~  380 (459)
                      -|  ..|++++   .++.++++....  +.+.....--.++  ......+++ +.  +.|.     +-+....++.+++.
T Consensus       292 Gp--~~G~i~g---~~~~i~~l~~~~--l~r~lr~~k~~la~l~~~l~~~~~-~~--~a~~~~~~l~~l~~~~~~~~~~A  361 (454)
T TIGR00474       292 GP--QAGIIVG---KKELIERLKKNP--LTRALRVDKLTLAALEATLRLYLD-PE--KALEKIPTLRMLTQSPEELRARA  361 (454)
T ss_pred             CC--eEEEEEE---CHHHHHhhhhch--hHHHHhhChHHHHHHHHHHHHHhC-ch--hhhhhchHHHHhccCHHHHHHHH
Confidence            45  3688765   666554432210  0000000001111  111111222 11  1111     22334455666677


Q ss_pred             HHHHHHHhhcc-CCCC-CcccccCC----cc---------eeeec---CCCHHHHHHHHhccc--EEEcC-CC--cEEEc
Q 012647          381 QKLFDSLSAKD-KSGK-DWSFILRQ----IG---------MFSFT---GLNKAQSDNMTNKWH--VYMTK-DG--RISLA  437 (459)
Q Consensus       381 ~~l~~~L~~~~-g~~~-~~~~~~~~----~g---------~f~~~---~l~~~~~~~ll~~~g--I~v~~-gg--Ris~~  437 (459)
                      +.+.+.|+ +. + ++ ..++....    ||         +-+-+   +++.+.+++.+++..  |..+- .|  .+.+.
T Consensus       362 ~~la~~L~-~~~~-~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~~~~~~~l~~~lr~~~~~ii~r~~~~~~~ld~r  439 (454)
T TIGR00474       362 ERLAKRLK-AALG-PGFELEIVPGLSQVGGGSLPDERLPSYAVTLTPDGLSAEKLEARLRELPPPIIGRIEDDRFLLDLR  439 (454)
T ss_pred             HHHHHHHH-hhcc-CCceEEEEEcCCcccCCCCcCCCCCeEEEEEecCCCCHHHHHHHHhcCCCCEEEEEECCEEEEEeC
Confidence            77888887 53 1 11 01222211    11         11112   345666666666655  33322 23  34566


Q ss_pred             cCChhhHHHHHHHH
Q 012647          438 GLSLAKCEYLADAI  451 (459)
Q Consensus       438 ~~~~e~i~~~~~~l  451 (459)
                      ++.++|++.++++|
T Consensus       440 ~~~~~~~~~~~~~~  453 (454)
T TIGR00474       440 TLLEDEEELLIEAL  453 (454)
T ss_pred             cCCHHHHHHHHHHh
Confidence            77788888888876

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK07481 hypothetical protein; Provisional

Probab=99.62  E-value=9.3e-13  Score=132.99  Aligned_cols=342  Identities=14%  Similarity=0.097  Sum_probs=188.4

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCC-CC--CCCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK-EY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~-~Y--~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      +...+|+..|..-..-+..  .|.|.+++.+.++..... .+  .+.....++.+.+++.+...     .-+.+.+  ++
T Consensus        41 G~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~-----~~~~v~f--~~  111 (449)
T PRK07481         41 GKKLLDGVGGLWNVNVGHN--REEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFAPE-----GMRRVFF--SS  111 (449)
T ss_pred             CCEEEECchhHHhhcCCCC--CHHHHHHHHHHHHhccceecccccCCHHHHHHHHHHHHhcCCC-----CCCEEEE--cC
Confidence            4567888777542233443  688999998887652211 11  12323334445555443100     1357888  99


Q ss_pred             cchhHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchHHHhhhC-C------------CCeeeeeeecCC--CCC-CCH
Q 012647          159 SGTGSLRLAAALIERYF-----PG-AKVLISSPTWGNHKNIFNDA-R------------VPWSEYRYYDPK--TVG-LDF  216 (459)
Q Consensus       159 ggt~a~~l~~~~~~~~~-----~g-d~Vlv~~p~y~~~~~~~~~~-G------------~~v~~v~~~~~~--~~~-~d~  216 (459)
                      +|++|++.+.++.+.+.     +| .+|+...-+|.+........ |            ..+..++.....  .+. .|+
T Consensus       112 sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~  191 (449)
T PRK07481        112 GGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDP  191 (449)
T ss_pred             chHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCH
Confidence            99999999988877652     23 57999998887653321111 1            112222221000  011 134


Q ss_pred             HHH--------HHHHH-cCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH
Q 012647          217 EGM--------IADIK-AAPGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (459)
Q Consensus       217 e~l--------~~~i~-~~~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~  286 (459)
                      +.+        ++.+. ..++....+|+...+.-.|.+ ++++-+++|.++|++||+++|.||+..+++-.+   ..+..
T Consensus       192 ~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~~a~  268 (449)
T PRK07481        192 EELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTG---SWFGS  268 (449)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCc---hhhHh
Confidence            443        33343 223456666666666666764 577779999999999999999999988886321   12222


Q ss_pred             HHHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHH---h-hccccccCCchHHHHHHHHHh---CC
Q 012647          287 RLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLK---R-LARPMYSNPPVHGARIVANVV---GN  358 (459)
Q Consensus       287 ~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~L---~~  358 (459)
                      .. .+..++++   .++|.++ .| +.+|.+++   +++..+.+.....   . ....++ +.+.++..++...|   ++
T Consensus       269 ~~-~gv~PDiv---~~gKgl~-gG~~Pi~av~~---~~~i~~~~~~~~~~~~~~~h~~T~-~gnpl~~aaa~a~L~~l~~  339 (449)
T PRK07481        269 RG-WGVKPDIM---CLAKGIT-SGYVPLGATMV---NARIADAFEANADFGGAIMHGYTY-SGHPVACAAALATLDIVVR  339 (449)
T ss_pred             hh-cCCCCCEE---EEeeccc-CCCcCceEEEE---cHHHHHHHhccCccccccccCCCC-CCCHHHHHHHHHHHHHHHh
Confidence            22 23334555   5699998 67 58999866   7774444322100   0 122233 33344434443333   22


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCCCcccccCCcceeee--c-CC------C--H----HHHHHHH
Q 012647          359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK--SGKDWSFILRQIGMFSF--T-GL------N--K----AQSDNMT  421 (459)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g--~~~~~~~~~~~~g~f~~--~-~l------~--~----~~~~~ll  421 (459)
                      +           ...++.++.-++|.+.|+ ++-  .|. +..+...|-++..  . +-      +  .    .+.+.++
T Consensus       340 ~-----------~l~~~~~~~g~~l~~~L~-~l~~~~~~-i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~  406 (449)
T PRK07481        340 E-----------DLPANAAKRGAYLLEGLQ-PLKERFEL-VGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVAR  406 (449)
T ss_pred             h-----------hHHHHHHHHHHHHHHHHH-HHhhcCCC-eEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHH
Confidence            2           234445555555655555 431  100 1122233333211  1 10      1  1    2234555


Q ss_pred             hcccEEEcCCC---cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          422 NKWHVYMTKDG---RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       422 ~~~gI~v~~gg---Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                      + +||.+.+.|   ||+-.. .+++++++++++|.++++++
T Consensus       407 ~-~Gvl~~~~g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~  446 (449)
T PRK07481        407 E-NGVLVRPSGTKIILSPPLVIQREDVDRIVDALDAGLSAV  446 (449)
T ss_pred             h-CCeEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            5 699998876   666332 38999999999999999875

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.62  E-value=7.5e-13  Score=134.86  Aligned_cols=346  Identities=15%  Similarity=0.084  Sum_probs=188.7

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCC-cccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI-EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~-~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      +...||+..|..-...|..  +|.|.+++.+.+++.. + +... .+..+....+++.+..... +...+.+.+  +++|
T Consensus        88 G~~ylD~~sg~~~~~lGh~--hp~v~~Av~~ql~~~~-~-~~~~~~~~~~~~~~lae~L~~~~~-~~~~~~v~f--~~SG  160 (504)
T PLN02760         88 GKKYLDALAGLWCTALGGS--EPRLVAAATEQLNKLP-F-YHSFWNRTTKPSLDLAKELLEMFT-ARKMGKVFF--TNSG  160 (504)
T ss_pred             CCEEEEcCcCHHhcccCCC--CHHHHHHHHHHHhhcc-c-eecccccCcHHHHHHHHHHHhhcC-CCCCCEEEE--eCCh
Confidence            4578999887542333443  7889999998886521 1 1111 1122333444444333211 011256888  9999


Q ss_pred             hhHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchHHH-hhhCCCC------------eeeeeeecCCCCC--------
Q 012647          161 TGSLRLAAALIERYF-----PG-AKVLISSPTWGNHKNI-FNDARVP------------WSEYRYYDPKTVG--------  213 (459)
Q Consensus       161 t~a~~l~~~~~~~~~-----~g-d~Vlv~~p~y~~~~~~-~~~~G~~------------v~~v~~~~~~~~~--------  213 (459)
                      ++|++.+.++...+.     ++ .+|+..+-+|.+..-. +...|..            +..++.  +..+.        
T Consensus       161 sEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~~~~~  238 (504)
T PLN02760        161 SEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDC--PHYWRFHLPGETE  238 (504)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCC--CcccccCCCCCcH
Confidence            999999988775431     22 6789988888765322 2212211            112221  11011        


Q ss_pred             -----CCHHHHHHHHHc-CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH
Q 012647          214 -----LDFEGMIADIKA-APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (459)
Q Consensus       214 -----~d~e~l~~~i~~-~~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~  286 (459)
                           ...+++++.+.. .++....+|+.....-.|.+ ++++-+++|.++|++||+++|+||++.+++--+   ..+..
T Consensus       239 ~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG---~~~a~  315 (504)
T PLN02760        239 EEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLG---TMFGC  315 (504)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccc---hhhHH
Confidence                 012456666642 22345566666666666765 567789999999999999999999987885322   12232


Q ss_pred             HHHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHH---h-hccccccCCchHHHHHHHHHhCChhh
Q 012647          287 RLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLK---R-LARPMYSNPPVHGARIVANVVGNPAL  361 (459)
Q Consensus       287 ~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~L~~~~~  361 (459)
                      .. .+-.+++   .+|+|.+| .| +.+|.+++   +++..+.+.....   . ....+++ .+.++..++...|+   .
T Consensus       316 e~-~gv~PDi---vtlgK~lg-gG~~PigAv~~---~~~i~d~~~~~~~~~~~~~h~~T~~-gnPl~~Aaala~Le---~  383 (504)
T PLN02760        316 DK-YNIKPDL---VSLAKALS-SAYMPIGAVLV---SPEISDVIHSQSNKLGSFAHGFTYS-GHPVSCAVALEALK---I  383 (504)
T ss_pred             Hh-cCCCCcE---EEeccccc-CCccccceEee---cHHHHhhhhcccccccCcccCCCCC-CCHHHHHHHHHHHH---H
Confidence            22 2223454   37899998 56 48999766   7775444432100   1 1223333 33444444433332   1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeee--cCC-------------CHHHHHHHHhcccE
Q 012647          362 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF--TGL-------------NKAQSDNMTNKWHV  426 (459)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~--~~l-------------~~~~~~~ll~~~gI  426 (459)
                      .   ++  +...++.+++-++|.+.|+ ++.--+.+..+.-.|.++.+  ..-             ...+.+.+++ +||
T Consensus       384 i---~~--~~l~~~~~~~g~~l~~~L~-~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~-~Gv  456 (504)
T PLN02760        384 Y---KE--RNIPEHVNKIAPRFQDGIK-AFSGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKK-RGM  456 (504)
T ss_pred             H---Hh--CCHHHHHHHHHHHHHHHHH-HHhcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHh-CCc
Confidence            1   00  1334555555566666665 44100001112233333321  110             0123445555 699


Q ss_pred             EEcCCC---cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          427 YMTKDG---RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       427 ~v~~gg---Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                      .+.+.|   ||+..- .++++|+++++++.++++++
T Consensus       457 l~~~~g~~lrl~Ppl~it~eeid~~~~~l~~al~~~  492 (504)
T PLN02760        457 LVRVAGDNIMMSPPLIITPEEVDELISIYGKALKAT  492 (504)
T ss_pred             EEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            998876   677431 29999999999999988754

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.62  E-value=8.2e-13  Score=132.61  Aligned_cols=343  Identities=9%  Similarity=0.025  Sum_probs=190.0

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC--CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...+|+..|..-...+..  +|.+.+++.+.+++..  ...+.+.....++-+.+++.....      -+.+.+  +.+
T Consensus        44 G~~ylD~~~g~~~~~lGh~--~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~------~~~v~f--~~s  113 (427)
T TIGR00508        44 GRRLIDGMSSWWAAIHGYN--HPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVKMTPNA------LDCVFL--ADS  113 (427)
T ss_pred             CCEEEEccchHHHhcCCCC--CHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCC------CCEEEE--eCC
Confidence            4578898877532222433  7889998888876421  111112333445555555553211      267888  999


Q ss_pred             chhHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchHHHhh-hCCC-------------CeeeeeeecCCCCC-----C
Q 012647          160 GTGSLRLAAALIERYF-----PG-AKVLISSPTWGNHKNIFN-DARV-------------PWSEYRYYDPKTVG-----L  214 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~-----~g-d~Vlv~~p~y~~~~~~~~-~~G~-------------~v~~v~~~~~~~~~-----~  214 (459)
                      |+++++.+.++.....     +| .+|+...-+|.+....+- ..|-             .+..+|.. ...+.     -
T Consensus       114 GseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~  192 (427)
T TIGR00508       114 GSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAP-QNRFDEEWNEE  192 (427)
T ss_pred             cHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCC-CccccchhHHH
Confidence            9999999988766542     23 679999988876532222 1121             01112210 00011     1


Q ss_pred             CHHHHHHHHHcCCCCcEEEEeCCC-CCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc
Q 012647          215 DFEGMIADIKAAPGGSFILLHGCA-HNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR  292 (459)
Q Consensus       215 d~e~l~~~i~~~~~~~~~ii~~~p-~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~  292 (459)
                      |++++++.+...++....+++... ++-.|. .++.+.+++|.++|++||+++|+||++.+++..+   ..+.... .+.
T Consensus       193 ~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G---~~~~~~~-~~v  268 (427)
T TIGR00508       193 AITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTG---KLFACEH-AGV  268 (427)
T ss_pred             HHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC---ccchhhh-cCC
Confidence            466777777643334555555543 555565 4578999999999999999999999987765432   1222211 222


Q ss_pred             CCeEEEEEcCCcCcccCCC-CcceEEEEeCChhHHHHHHHHHH-h-hccccccCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012647          293 GMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARVKSQLK-R-LARPMYSNPPVHGARIVANVVGNPALFDEWKAEM  369 (459)
Q Consensus       293 ~~~~i~~~S~SK~~~~~G~-RiG~~~~v~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~  369 (459)
                      .++++   .++|.++ .|+ .++.+++   +++..+.+..... . ....++. .+.++..++...|+   +.   ++  
T Consensus       269 ~pDi~---~~gK~l~-gG~~p~~a~~~---~~~~~~~~~~~~~~~~~~~~T~~-g~p~~~aaa~a~l~---~l---~~--  332 (427)
T TIGR00508       269 VPDIL---CVGKALT-GGYMTLSATVT---TDKVAQTISSGEAGCFMHGPTFM-GNPLACAVAEASLA---IL---LE--  332 (427)
T ss_pred             CCCEE---Eechhhh-cCcccceEEEE---cHHHHHHHhcCCCCccccCCCCC-cCHHHHHHHHHHHH---HH---Hh--
Confidence            33433   3799997 674 5666644   7774444432100 0 1112222 23333333333322   10   00  


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceee-ecC--CC-HHHHHHHHhcccEEEcCCC---cEEEcc-CCh
Q 012647          370 EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFS-FTG--LN-KAQSDNMTNKWHVYMTKDG---RISLAG-LSL  441 (459)
Q Consensus       370 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~-~~~--l~-~~~~~~ll~~~gI~v~~gg---Ris~~~-~~~  441 (459)
                      +...++.+++.++|.+.|+ +++....+..+...|.++. .++  .. ..+..++++ +||.+.+.+   |++..- .++
T Consensus       333 ~~~~~~~~~~~~~l~~~L~-~l~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~l~~~ppl~~t~  410 (427)
T TIGR00508       333 GEWQKQVSAIENQLKRELS-PLRKNPVVKDVRVLGAIGVVEMYKPVNVEELQKKFVE-QGVWIRPFGKLIYVMPPYIITT  410 (427)
T ss_pred             CCHHHHHHHHHHHHHHHHH-HhhcCCCEEeEeccccEEEEEECCccCHHHHHHHHHH-CCeEEEecCCEEEEECCCCCCH
Confidence            1234666667777777777 6541000111111233221 111  12 244556666 599998766   666542 289


Q ss_pred             hhHHHHHHHHHHHHhh
Q 012647          442 AKCEYLADAIIDSYHN  457 (459)
Q Consensus       442 e~i~~~~~~l~~~~~~  457 (459)
                      ++|+++++++.+++.+
T Consensus       411 ~~id~~~~~l~~~l~~  426 (427)
T TIGR00508       411 EQLQKLTAALIEALHE  426 (427)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999999865

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK06917 hypothetical protein; Provisional

Probab=99.61  E-value=6.3e-13  Score=134.00  Aligned_cols=343  Identities=11%  Similarity=0.013  Sum_probs=185.9

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC---CCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL---PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~---~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      +...||+..|..-...+..  +|.|.+++.+.+++.. +.+.   +.....+|.+.+++.+...      .+.+.+  ++
T Consensus        30 G~~ylD~~~g~~~~~lGh~--hp~v~~Ai~~ql~~~~-~~~~~~~~~~~~~~lae~L~~~~p~~------~~~v~f--~~   98 (447)
T PRK06917         30 GNKYFDGSSGAVTAGIGHG--VKEIADAIKEQAEEVS-FVYRSQFTSEPAEKLAKKLSDLSPGD------LNWSFF--VN   98 (447)
T ss_pred             CCEEEECchhHHhccCCCC--CHHHHHHHHHHHhhCc-CccccccCCHHHHHHHHHHHHhCCCC------CCEEEE--eC
Confidence            3578898877542223443  7889999988886531 2211   2222334555555543111      256888  99


Q ss_pred             cchhHHHHHHHHHHHh------CCCCEEEEcCCCCcchHHHhh-hCCC------------CeeeeeeecCCCC--C----
Q 012647          159 SGTGSLRLAAALIERY------FPGAKVLISSPTWGNHKNIFN-DARV------------PWSEYRYYDPKTV--G----  213 (459)
Q Consensus       159 ggt~a~~l~~~~~~~~------~~gd~Vlv~~p~y~~~~~~~~-~~G~------------~v~~v~~~~~~~~--~----  213 (459)
                      +|++|++.+.++....      ....+|+...-+|.+...... ..|.            .+..+|.......  .    
T Consensus        99 sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  178 (447)
T PRK06917         99 SGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYP  178 (447)
T ss_pred             ChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChH
Confidence            9999999998877544      123689999988876543222 1111            1112221000000  0    


Q ss_pred             ----CCHHHHHHHHHcCC-CCcEEEEeCCCCC-CCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH
Q 012647          214 ----LDFEGMIADIKAAP-GGSFILLHGCAHN-PTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (459)
Q Consensus       214 ----~d~e~l~~~i~~~~-~~~~~ii~~~p~N-PTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~  286 (459)
                          -+++.+++.++... +....+|+..... --|. .++++-+++|.++|++||+++|.||+..+++-.+   ..+..
T Consensus       179 ~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG---~~~a~  255 (447)
T PRK06917        179 TCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTG---AMFAM  255 (447)
T ss_pred             HHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCccc---chhhH
Confidence                02456677776432 2345555444343 3444 5678889999999999999999999988774221   12222


Q ss_pred             HHHHhcCCeEEEEEcCCcCcccCCC-CcceEEEEeCChhHHHHHHHHHHhh-ccccccCCchHHHHHHHHHhCChhhHHH
Q 012647          287 RLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARVKSQLKRL-ARPMYSNPPVHGARIVANVVGNPALFDE  364 (459)
Q Consensus       287 ~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~~~~~~~  364 (459)
                      .. .+..++++   +|+|.++ .|+ .+|.+++   .++..+.+...-..+ ...++ +.+.++..++...|+-   .  
T Consensus       256 ~~-~gv~PDi~---~~gK~l~-~G~~Pi~a~~~---~~~i~~~~~~~~~~~~~~~T~-~gnpl~~aaa~a~l~~---l--  321 (447)
T PRK06917        256 EH-WGVEPDIM---TLGKGLG-AGYTPIAATVV---SDRVMEPILRGSRSIMSGHTL-SANPLSAATALAVLEY---M--  321 (447)
T ss_pred             Hh-cCCCCCEE---Eeeehhc-cCCcceEEEEE---cHHHHHHHhccCcccccccCC-CCCHHHHHHHHHHHHH---H--
Confidence            22 23334544   6799998 775 8898866   777444432211111 11223 3333443444333321   0  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccC--CCCCcccccCCcceeee--cC-------C------CHHHHHHHHhcccEE
Q 012647          365 WKAEMEMMAGRIKNVRQKLFDSLSAKDK--SGKDWSFILRQIGMFSF--TG-------L------NKAQSDNMTNKWHVY  427 (459)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g--~~~~~~~~~~~~g~f~~--~~-------l------~~~~~~~ll~~~gI~  427 (459)
                       ++  +...++.+++-++|.+.|+ ++.  .| .+..+...|-++..  ..       .      ...+...+++ +||.
T Consensus       322 -~~--~~l~~~~~~~g~~l~~~L~-~l~~~~~-~i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl  395 (447)
T PRK06917        322 -EK--HNLPEKAAEKGEYLIKGLQ-KVQQQST-IIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAK-NGLL  395 (447)
T ss_pred             -HH--CCHHHHHHHHHHHHHHHHH-HHHhcCC-CEEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHh-CCcE
Confidence             00  1234455555555555555 431  11 01122233333311  11       0      1123445555 6999


Q ss_pred             EcCC--------C---cEEEc-cCChhhHHHHHHHHHHHHhhc
Q 012647          428 MTKD--------G---RISLA-GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       428 v~~g--------g---Ris~~-~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      +.+.        |   |++.. ..++++++++++++.++++++
T Consensus       396 ~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~  438 (447)
T PRK06917        396 LYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEM  438 (447)
T ss_pred             EEecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence            9764        2   66543 138999999999999998763

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.61  E-value=1.7e-12  Score=130.00  Aligned_cols=335  Identities=10%  Similarity=0.071  Sum_probs=184.9

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCC--CCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y--~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...+|+..|..-..-++.  .|.|.+++.+.+++.....+  .......+|.+.+++.....      -+.+.+  +++
T Consensus        39 G~~ylD~~~g~~~~~lGh~--~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~------~~~v~f--~~S  108 (422)
T PRK05630         39 GSTVIDAMSSWWSAAHGHG--HPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKLLNLTDNG------LDHVFY--SDS  108 (422)
T ss_pred             CCEEEEcchhHHHhcCCCC--CHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHhhCCCC------cCEEEE--eCC
Confidence            4578898887653333443  78899999888865221111  12223345555555543111      257888  999


Q ss_pred             chhHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchHHHhh-hCC-------------CCeeeeeeecCCCCCCC----
Q 012647          160 GTGSLRLAAALIERYF-----PG-AKVLISSPTWGNHKNIFN-DAR-------------VPWSEYRYYDPKTVGLD----  215 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~-----~g-d~Vlv~~p~y~~~~~~~~-~~G-------------~~v~~v~~~~~~~~~~d----  215 (459)
                      |++|++.+.++...+.     ++ .+|+....+|.+...... ..+             ..+..+|...  ....+    
T Consensus       109 GseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~  186 (422)
T PRK05630        109 GSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPP--VRGSSPQEI  186 (422)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCc--ccCCChHHH
Confidence            9999999988876653     23 579999988876432221 111             1122333211  01112    


Q ss_pred             ---HHHHHHHHHcCCCCcEEEEeCC-CCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH
Q 012647          216 ---FEGMIADIKAAPGGSFILLHGC-AHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA  290 (459)
Q Consensus       216 ---~e~l~~~i~~~~~~~~~ii~~~-p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~  290 (459)
                         .+.+++.+.+   ....+|+.. ++...|.. ++.+.+++|.++|++||+++|.||++.+++-.+   ..+... ..
T Consensus       187 ~~~~~~~~~~~~~---~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG---~~~a~~-~~  259 (422)
T PRK05630        187 SEYLRSLELLIDE---TVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTG---ELFATL-AA  259 (422)
T ss_pred             HHHHHHHHHHHhh---ceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCc---hhhHHH-hc
Confidence               2334444443   455666554 26667764 567889999999999999999999987775321   222222 12


Q ss_pred             hcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHH--h-hccccccCCchHHHHHHHH---HhCChhhHH
Q 012647          291 TRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLK--R-LARPMYSNPPVHGARIVAN---VVGNPALFD  363 (459)
Q Consensus       291 ~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~---~L~~~~~~~  363 (459)
                      +..++++   +++|.++ .| ..+|++++   +++..+.+...-.  . ....++. .+.++..++..   .+++.    
T Consensus       260 gv~PDi~---t~gK~l~-gG~~p~~av~~---~~~i~~~~~~~~~~~~~~h~~T~~-g~Pla~aaa~aaL~~l~~~----  327 (422)
T PRK05630        260 GVTPDIM---CVGKALT-GGFMSFAATLC---TDKVAQLISTPNGGGALMHGPTFM-ANPLACAVAHASLEIIETG----  327 (422)
T ss_pred             CCCCCee---eeechhh-cCccccceeec---cHHHHHHHhccCCCCccccCCCCc-CCHHHHHHHHHHHHHHHhC----
Confidence            2334444   7899986 56 47888765   7774444321100  0 1122332 33333333332   23222    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCcccccCCcceeeecCC----CH-HHHHHHHhcccEEEcCCC---cE
Q 012647          364 EWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKDG---RI  434 (459)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~gg---Ri  434 (459)
                             ...++.+++-+++.+.|+ ++. .| .+.-+.-. |.++-+.+    .. .+...+++ +||.+.+.|   ||
T Consensus       328 -------~~~~~~~~~g~~l~~~L~-~l~~~~-~v~~vRg~-Gl~~~ie~~~~~~~~~~~~~~~~-~Gl~~~~~g~~l~~  396 (422)
T PRK05630        328 -------MWRKQVKRIEAELIAGLS-PLAHLP-GVADVRVL-GAIGVVEMEQPVDMEEATQAAVD-HGVWLRPFGRLVYV  396 (422)
T ss_pred             -------cHHHHHHHHHHHHHHHHH-HhhcCC-Ceeeeecc-ccEEEEEECCcccHHHHHHHHHH-CCeEEEecCCEEEE
Confidence                   223344444455555554 431 11 01112222 33322211    22 34455555 699998876   55


Q ss_pred             EEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          435 SLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       435 s~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                      ...- .+++++++++++|.++++..
T Consensus       397 ~PpL~it~~~i~~~~~~l~~al~~~  421 (422)
T PRK05630        397 MPPYITTSEQIAQICAALAAAVKAK  421 (422)
T ss_pred             ECCccCCHHHHHHHHHHHHHHHhcc
Confidence            4332 38999999999999998754

>PRK06105 aminotransferase; Provisional

Probab=99.61  E-value=7.7e-13  Score=133.88  Aligned_cols=340  Identities=11%  Similarity=0.046  Sum_probs=189.6

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CCCC--CCCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y--~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      +...||+..|..-..-++.  +|.|.+++.+.+++.. ...+  .......++-+.+++.....      -+.+.+  ++
T Consensus        47 G~~ylD~~~g~~~~~lGh~--~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~------~~~v~f--~~  116 (460)
T PRK06105         47 GKRYIEGMAGLWSVALGFS--EQRLVEAAARQMKKLPFYHTFSHKSHGPVIDLAEKLVAMAPVP------MSKVFF--TN  116 (460)
T ss_pred             CCEEEEcchhHHhccCCCC--CHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCC------CCEEEE--eC
Confidence            4578999888542333443  7889999998886521 0111  01222234445555443211      257888  99


Q ss_pred             cchhHHHHHHHHHHHhC-----C-CCEEEEcCCCCcchHHHhhh-CCC------------CeeeeeeecCCCCCC-----
Q 012647          159 SGTGSLRLAAALIERYF-----P-GAKVLISSPTWGNHKNIFND-ARV------------PWSEYRYYDPKTVGL-----  214 (459)
Q Consensus       159 ggt~a~~l~~~~~~~~~-----~-gd~Vlv~~p~y~~~~~~~~~-~G~------------~v~~v~~~~~~~~~~-----  214 (459)
                      +|++|++.+.++.....     + ..+|+...-+|.+.....-. .|.            .+..+|..  ..+..     
T Consensus       117 SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~  194 (460)
T PRK06105        117 SGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCP--HYYRFGLPGE  194 (460)
T ss_pred             CcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCC--cccccccCCC
Confidence            99999999988765431     2 35788888888655322111 110            12222221  11111     


Q ss_pred             --------CHHHHHHHHHc-CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChh
Q 012647          215 --------DFEGMIADIKA-APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDAS  284 (459)
Q Consensus       215 --------d~e~l~~~i~~-~~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~  284 (459)
                              .++++++.+.. .+++...+|+-..+.-.|.. ++++-+++|.++|++||+++|.||++.+++-.+   ..+
T Consensus       195 ~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG---~~f  271 (460)
T PRK06105        195 SEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTG---NMF  271 (460)
T ss_pred             ChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCc---hhh
Confidence                    13566776643 22345666666666666765 588889999999999999999999987886321   223


Q ss_pred             HHHHHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHH---hh-ccccccCCchHHHHHHHHH---h
Q 012647          285 SVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLK---RL-ARPMYSNPPVHGARIVANV---V  356 (459)
Q Consensus       285 ~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~---L  356 (459)
                      .... .+..++++   +++|.++ .| +.+|++++   +++..+.+.....   .. ...++ +.+.++..++...   +
T Consensus       272 ~~~~-~~v~PDi~---~~gK~lg-gG~~P~~av~~---~~~i~~~~~~~~~~~~~~~h~~T~-~gnpl~~aaa~a~L~~i  342 (460)
T PRK06105        272 GCET-FGIKPDIL---VMSKQLS-SSYQPLSAVLM---NEKVYDPIADESGKIGTFGHGFTA-SGHPVAAAVALENLAII  342 (460)
T ss_pred             hHHh-cCCCCCee---eeecccc-cCcccceEEEE---cHHHHHHHhcccccCcccccCCCC-CCCHHHHHHHHHHHHHH
Confidence            3222 23334544   7899998 56 58899866   7774444332100   00 11223 3334443444333   2


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeee-c-CC-------C------HHHHHHHH
Q 012647          357 GNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF-T-GL-------N------KAQSDNMT  421 (459)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~-~-~l-------~------~~~~~~ll  421 (459)
                      +++           ...++.+++-++|.+.|+ ++.--+.+..+...|-++.+ + ..       +      ..+...++
T Consensus       343 ~~~-----------~l~~~v~~~g~~l~~~L~-~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~  410 (460)
T PRK06105        343 EER-----------DLVGNAAERGARLQARLR-ALADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAH  410 (460)
T ss_pred             Hhc-----------cHHHHHHHHHHHHHHHHH-HhhcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHHHHHHHH
Confidence            222           334555556666666665 44100001122233322211 1 10       0      12234444


Q ss_pred             hcccEEEcCCC---cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          422 NKWHVYMTKDG---RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       422 ~~~gI~v~~gg---Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                       ++||.+.+.|   |++... .++++++++++++.++++++
T Consensus       411 -~~Gvl~~~~g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~  450 (460)
T PRK06105        411 -EHGVISRAMGDTLAFCPPLIITAAQVDEMVDRFGRALDDV  450 (460)
T ss_pred             -HCCeEEEecCCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence             4699998866   666432 38999999999999999765

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.61  E-value=6.6e-13  Score=129.94  Aligned_cols=312  Identities=13%  Similarity=0.107  Sum_probs=185.4

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC--CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...+|+..|.....-+..  +|.|.+++++.+++..  ...| +.....+|.+.++++. .       .+.+++  +++
T Consensus        23 G~~ylD~~~g~~~~~lGh~--~p~v~~ai~~ql~~~~~~~~~~-~~~~~~~la~~l~~~~-~-------~~~v~~--~~S   89 (364)
T PRK04013         23 GRRYLDLIAGIGVNVLGHN--HPEWVEEMSEQLEKLVVAGPMF-EHEEKEEMLEELSKWV-N-------YEYVYM--GNS   89 (364)
T ss_pred             CCEEEEcccChhhccCCCC--CHHHHHHHHHHHHhcCCccCCc-CCHHHHHHHHHHHhhc-C-------CCEEEE--eCc
Confidence            4578898877542333443  6888899888876421  1123 3344456666666663 1       257888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhh--------CCCC-----eeeeeeecCCCCCCCHHHHHHHHHcC
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND--------ARVP-----WSEYRYYDPKTVGLDFEGMIADIKAA  226 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~--------~G~~-----v~~v~~~~~~~~~~d~e~l~~~i~~~  226 (459)
                      |++|++.+.++.......++|+..+-+|.+.....-.        .+..     +..+|.       .|++.+++.+.+ 
T Consensus        90 GseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~-------~d~~~l~~~i~~-  161 (364)
T PRK04013         90 GTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPF-------NDVEAAKEAITK-  161 (364)
T ss_pred             hHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecC-------CCHHHHHHHhcC-
Confidence            9999999988876654448999999988765322222        1111     122222       267888888864 


Q ss_pred             CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC
Q 012647          227 PGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (459)
Q Consensus       227 ~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (459)
                        +...+++...+...|.. .+++.+++|.++|++||+++|+||+..++..+    ..+.... .+-.++++   +++|.
T Consensus       162 --~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG----~~~a~~~-~gv~PDiv---~~gK~  231 (364)
T PRK04013        162 --ETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTG----KFLAIEH-YKVEPDIV---TMGKG  231 (364)
T ss_pred             --CcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCC----chhHHHh-cCCCCCEE---Eeccc
Confidence              66777766666666654 46678999999999999999999998877432    2223322 23345555   56999


Q ss_pred             cccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHH---HHhCChhhHHHHHHHHHHHHHHHHHHHHH
Q 012647          306 LGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVA---NVVGNPALFDEWKAEMEMMAGRIKNVRQK  382 (459)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (459)
                      ++ .|+.+|.++.   +.+    +..   ....+++ +.+.++..++.   ..+++.++.       ++.++.       
T Consensus       232 lg-gG~P~~a~~~---~~~----~~~---~~~~~T~-~gnp~~~aaa~a~l~~i~~~~l~-------~~~~~~-------  285 (364)
T PRK04013        232 IG-NGVPVSLTLT---NFD----VER---GKHGSTF-GGNPLACKAVAVTLRILRRERLV-------EKAGEK-------  285 (364)
T ss_pred             cc-CCceeEEEEe---ccc----ccC---CCcCCCC-CcCHHHHHHHHHHHHHHHhccHH-------HHHHHH-------
Confidence            99 6899999865   444    211   1122333 33334333333   333333321       111111       


Q ss_pred             HHHHHhhccCCCCCcccccCCcceeeecCCC---HHHHHHHHhcccEEEcCCC----cEEEc-cCChhhHHHHHHHHHHH
Q 012647          383 LFDSLSAKDKSGKDWSFILRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAIIDS  454 (459)
Q Consensus       383 l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~gg----Ris~~-~~~~e~i~~~~~~l~~~  454 (459)
                      + +.+. . +   .+.-+.-. |.++-+.+.   ....+.+++ +|+.+.+.|    |+.-. .++++++++++++|.++
T Consensus       286 l-~~l~-~-~---~v~~vRG~-Gl~~gve~~~~~~~i~~~~~~-~Gll~~~~g~~vlr~~Ppl~it~~~i~~~~~~l~~~  357 (364)
T PRK04013        286 F-IEIK-G-E---RVVTTRGR-GLMIGIVLKKPVGKYVEELQN-RGYLVHTAGQRVIRLLPPLIISKDTMEEAKSAIEGV  357 (364)
T ss_pred             H-HHhc-c-C---cceeeeeC-cEEEEEEeCCcHHHHHHHHHh-CCcEEeeCCCCEEEEeCCcccCHHHHHHHHHHHHHH
Confidence            1 1222 1 1   01222223 333222221   234556665 699998765    66533 23899999999999999


Q ss_pred             Hhhc
Q 012647          455 YHNV  458 (459)
Q Consensus       455 ~~~~  458 (459)
                      ++++
T Consensus       358 l~~~  361 (364)
T PRK04013        358 INDI  361 (364)
T ss_pred             HHHH
Confidence            8764

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.61  E-value=2.4e-12  Score=130.23  Aligned_cols=343  Identities=11%  Similarity=0.043  Sum_probs=188.5

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC-CC--CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-EN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~--~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      +...+|+..|.--..-+..  .|.|.+++.+.++.- ..  ..+ +..-..+|-+.+++.+....+. -.-+.+.+  ++
T Consensus        63 G~~ylD~~~g~~~~~lGh~--~p~i~~Ai~~q~~~l~~~~~~~~-~~~~~~~lae~L~~~~p~~~~~-~~~~~v~f--~~  136 (472)
T PRK08742         63 GRRYLDAVSSWWTNLFGHA--EPRIGAAIAAQAGELEQVMLAGF-THEPAVQLAEQLLAIAPRQDGR-APLSKVFY--AD  136 (472)
T ss_pred             CCEEEEcCccHHhccCCCC--CHHHHHHHHHHHHhCCCcccccc-CCHHHHHHHHHHHHhCCCcccC-CCCCEEEE--eC
Confidence            4578898888542233443  788999988877531 10  112 2222234444444443211000 01257888  99


Q ss_pred             cchhHHHHHHHHHHHhC-----C-CCEEEEcCCCCcchHHHhhhC-CC------------CeeeeeeecCC--CCCC---
Q 012647          159 SGTGSLRLAAALIERYF-----P-GAKVLISSPTWGNHKNIFNDA-RV------------PWSEYRYYDPK--TVGL---  214 (459)
Q Consensus       159 ggt~a~~l~~~~~~~~~-----~-gd~Vlv~~p~y~~~~~~~~~~-G~------------~v~~v~~~~~~--~~~~---  214 (459)
                      +|++|++.+.++...+.     + ..+|+...-+|.+........ |.            .+..+|..+..  .++.   
T Consensus       137 sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~  216 (472)
T PRK08742        137 NGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAE  216 (472)
T ss_pred             CchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHH
Confidence            99999999988877662     2 368999998887654222211 11            12223331100  0111   


Q ss_pred             -----CHHHHHHHHHcCCCCcEEEEeCC-CCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHH
Q 012647          215 -----DFEGMIADIKAAPGGSFILLHGC-AHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR  287 (459)
Q Consensus       215 -----d~e~l~~~i~~~~~~~~~ii~~~-p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~  287 (459)
                           +++.+++.+...++....+|+.. .++-.|. .++++-++++.++|++||+++|.||+..+++-.+   ..+...
T Consensus       217 ~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG---~~~a~e  293 (472)
T PRK08742        217 DYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTG---TLFACE  293 (472)
T ss_pred             HHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCc---cchHHH
Confidence                 25666777754344556666554 3666676 5678889999999999999999999988886432   233332


Q ss_pred             HHHhcCCeEEEEEcCCcCcccCCC-CcceEEEEeCChhHHHHHHHHHH--h-hccccccCCchHHHHHHHH---HhCChh
Q 012647          288 LFATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARVKSQLK--R-LARPMYSNPPVHGARIVAN---VVGNPA  360 (459)
Q Consensus       288 ~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~~~v~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~---~L~~~~  360 (459)
                      . .+..++++   .++|.++ .|+ .+|.+++   +++..+.+.....  . ....++ +.+.++..++..   ++++++
T Consensus       294 ~-~gv~PDiv---~~gKgl~-gG~~Plaav~~---~~ei~~~~~~~~~~~~~~h~~T~-~gnpl~~Aaa~a~L~~i~~~~  364 (472)
T PRK08742        294 Q-AGVMPDLL---CLSKGLT-GGFLPLSAVLA---TQQLYDAFLDDSRERAFLHSHSY-TGNPLACAAALATLDIFADDD  364 (472)
T ss_pred             h-cCCCCCEE---EEccccc-CCCCCcceeec---cHHHHHHhhccCccCccCcCCCC-CccHHHHHHHHHHHHHHHHCC
Confidence            2 23345655   4699998 684 8999866   7774443321100  0 122333 233333333333   233322


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH---HHhhccCCCCCcccccCCcceeee--cCC-------C------HHHHHHHHh
Q 012647          361 LFDEWKAEMEMMAGRIKNVRQKLFD---SLSAKDKSGKDWSFILRQIGMFSF--TGL-------N------KAQSDNMTN  422 (459)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~l~~---~L~~~~g~~~~~~~~~~~~g~f~~--~~l-------~------~~~~~~ll~  422 (459)
                      +           .++.++.-++|.+   .+. +++.   +..+.-.|-++.+  ...       .      ....+++++
T Consensus       365 l-----------~~~~~~~g~~l~~~~~~~~-~~~~---i~dvRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (472)
T PRK08742        365 V-----------IARNQPTAARMTQLAAQIG-EHPH---VADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALA  429 (472)
T ss_pred             H-----------HHHHHHHHHHHHHHHHHHh-cCCC---eeeEeccceEEEEEeccCccccccCCchhHHHHHHHHHHHH
Confidence            2           2222233333333   333 3321   2223333333321  110       0      122445555


Q ss_pred             cccEEEcCCC---cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          423 KWHVYMTKDG---RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       423 ~~gI~v~~gg---Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                       +||.+.+.|   ||.-.- ++++++++++++|.++++++
T Consensus       430 -~Gll~~~~g~vi~~~PpL~it~~ei~~~~~~l~~~l~~~  468 (472)
T PRK08742        430 -RGVVLRPLGDVLYWMPPYCVDEAQLALLADTTRHAIDEA  468 (472)
T ss_pred             -CCeEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence             599998876   554332 38999999999999999763

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.61  E-value=1.3e-12  Score=132.17  Aligned_cols=344  Identities=9%  Similarity=0.025  Sum_probs=193.6

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-C-CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-N-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~-~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...||+..|......++.  +|.|.+++.+.+++.. . ..+.+.....+|.+.+++.+...      .+.+.+  +++
T Consensus        55 G~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~------~~~v~f--~~S  124 (460)
T PRK06916         55 GNEYYDGVSSIWLNVHGHQ--VPELDEAIREQLNKIAHSTLLGLANVPSILLAEKLIEVVPEG------LKKVFY--SDS  124 (460)
T ss_pred             CCEEEEcchhHHHhhcCCC--CHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCC------CCEEEE--eCC
Confidence            4567888777542222443  7889999988886421 1 11123333345555555553211      257888  999


Q ss_pred             chhHHHHHHHHHHHh-----CC-CCEEEEcCCCCcchHHHhhh-CC------------CCeeeeeeecCC--CCC-----
Q 012647          160 GTGSLRLAAALIERY-----FP-GAKVLISSPTWGNHKNIFND-AR------------VPWSEYRYYDPK--TVG-----  213 (459)
Q Consensus       160 gt~a~~l~~~~~~~~-----~~-gd~Vlv~~p~y~~~~~~~~~-~G------------~~v~~v~~~~~~--~~~-----  213 (459)
                      |++|++.+.++...+     .+ ..+|+...-+|.+....... .|            ..+..+|.....  .+.     
T Consensus       125 GseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~  204 (460)
T PRK06916        125 GATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAE  204 (460)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHH
Confidence            999999998887664     23 36899999888764322211 11            112233321000  001     


Q ss_pred             ---CCHHHHHHHHHcCCCCcEEEEeCC-CCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH
Q 012647          214 ---LDFEGMIADIKAAPGGSFILLHGC-AHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (459)
Q Consensus       214 ---~d~e~l~~~i~~~~~~~~~ii~~~-p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~  288 (459)
                         -+++.+++.++..++....+|+.. .+...|.+ ++++-+++|.++|++||+++|.||+..+++-.+   ..+....
T Consensus       205 ~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG---~~~a~~~  281 (460)
T PRK06916        205 IVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTG---KMFACEH  281 (460)
T ss_pred             HHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCc---hhhHHHh
Confidence               135666777764444556666555 46666765 588889999999999999999999988775321   2223222


Q ss_pred             HHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHH---Hh-hccccccCCchHHHHHHHHHhCChhhHH
Q 012647          289 FATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQL---KR-LARPMYSNPPVHGARIVANVVGNPALFD  363 (459)
Q Consensus       289 ~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~L~~~~~~~  363 (459)
                       .+..++++   .++|.++ .| +.+|.+++   +++..+.+....   .. ....++ +.+.++..++...|+   .. 
T Consensus       282 -~gv~PDiv---~~gK~l~-gG~~Pi~av~~---~~ei~~~~~~~~~~~~~~~~~~T~-~gnpl~~aaa~a~l~---~l-  348 (460)
T PRK06916        282 -ENVTPDIM---TAGKGLT-GGYLPIAITVT---TDEIYNAFYGDYEEQKTFFHGHSY-TGNPLGCAVALANLE---LY-  348 (460)
T ss_pred             -cCCCCCee---eeehhhh-cCccccceeee---cHHHHHHhhccccccCccccCCCC-CCCHHHHHHHHHHHH---HH-
Confidence             23334554   5799998 78 58999866   777444432211   01 122233 233444334433331   10 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCcccccCCcceeee--cCC---------C----HHHHHHHHhcccEE
Q 012647          364 EWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSF--TGL---------N----KAQSDNMTNKWHVY  427 (459)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~g~f~~--~~l---------~----~~~~~~ll~~~gI~  427 (459)
                        ++  +...++.+++-+++.+.|+ ++. .|. +..+.-.|-++..  ..-         +    ..+...+++ +||.
T Consensus       349 --~~--~~l~~~~~~~g~~l~~~l~-~l~~~~~-v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~-~Gvl  421 (460)
T PRK06916        349 --EK--TNLIEQVARKTEYVATQLE-DLFALKH-VGDIRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRE-LGML  421 (460)
T ss_pred             --Hh--ccHHHHHHHHHHHHHHHHH-HhhcCCC-eEEeecCCceeeEEeecccccccCCCchhhHHHHHHHHHHH-CCeE
Confidence              00  1234555566666666666 541 110 1112223322211  110         0    123445555 6999


Q ss_pred             EcCCC---cEEEc-cCChhhHHHHHHHHHHHHhhc
Q 012647          428 MTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       428 v~~gg---Ris~~-~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      +.+.|   |+..+ ..+++++++++++|.++++++
T Consensus       422 ~~~~g~~l~~~Ppl~it~~~id~~~~~l~~~l~~~  456 (460)
T PRK06916        422 TRPLGNTIVFMPPLASTIDELDEMLRILYKAISDV  456 (460)
T ss_pred             EEecCCEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence            99866   55422 238999999999999999765

>PRK07036 hypothetical protein; Provisional

Probab=99.60  E-value=1.2e-12  Score=132.55  Aligned_cols=341  Identities=11%  Similarity=0.088  Sum_probs=187.1

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CCCC--CCCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y--~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      +...+|+..|..-..-+..  +|.|.+++.+.++... ...+  .+..-..++.+.+++.....      -+.+.+  ++
T Consensus        50 G~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~------~~~v~f--~~  119 (466)
T PRK07036         50 GRRYLDGIGGMWCVNVGYG--REEMADAIADQARRLPYYTPFGDMTNAPAAELAAKLAELAPGD------LNHVFL--TT  119 (466)
T ss_pred             CCEEEECcccHHhhcCCCC--CHHHHHHHHHHHHhCcccccccccCCHHHHHHHHHHHHhCCCC------cCEEEE--eC
Confidence            4568888777532222333  7889999888776421 1111  12222234444444442111      257888  99


Q ss_pred             cchhHHHHHHHHHHHhC-----C-CCEEEEcCCCCcchHHHhhhC-C------------CCeeeeeeecC--CCCCCC--
Q 012647          159 SGTGSLRLAAALIERYF-----P-GAKVLISSPTWGNHKNIFNDA-R------------VPWSEYRYYDP--KTVGLD--  215 (459)
Q Consensus       159 ggt~a~~l~~~~~~~~~-----~-gd~Vlv~~p~y~~~~~~~~~~-G------------~~v~~v~~~~~--~~~~~d--  215 (459)
                      +|++|++.+.++...+.     + ..+|+...-+|.+........ |            ..+..+|....  ...+.+  
T Consensus       120 sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  199 (466)
T PRK07036        120 GGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEA  199 (466)
T ss_pred             CchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChH
Confidence            99999999988876552     2 368888888887654322211 1            11222332110  011111  


Q ss_pred             ------HHHHHHHHHc-CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHH
Q 012647          216 ------FEGMIADIKA-APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR  287 (459)
Q Consensus       216 ------~e~l~~~i~~-~~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~  287 (459)
                            ++.+++.+.. .++....+|+...+...|.+ ++++-+++|.++|++||+++|.||+..+++-.+   ..+...
T Consensus       200 ~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~~~~~  276 (466)
T PRK07036        200 AFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLG---HFFASE  276 (466)
T ss_pred             HHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCc---hhhhhh
Confidence                  2344555542 23455666666666666764 577889999999999999999999988885321   122322


Q ss_pred             HHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHH---HH-hhccccccCCchHHHHHHHHHh---CCh
Q 012647          288 LFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQ---LK-RLARPMYSNPPVHGARIVANVV---GNP  359 (459)
Q Consensus       288 ~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~L---~~~  359 (459)
                      ...+..++++   +++|.++ .| +.+|.+++   +++..+.+...   .. .....++ +.+.++..++...|   +++
T Consensus       277 ~~~gv~PDiv---t~gK~l~-gG~~Pi~av~~---~~~i~~~~~~~~~~~~~~~~~~T~-~gnpl~~aaa~a~Le~i~~~  348 (466)
T PRK07036        277 AVFGIQPDII---TFAKGLT-SGYQPLGAVII---SERLLDVISGPNAKGNVFTHGFTY-SGHPVACAAALKNIEIMERE  348 (466)
T ss_pred             hhcCCCCCEE---EEccccc-cCccccEEEEE---cHHHHHHHhcccCcCcccccCCCC-CCCHHHHHHHHHHHHHHHhC
Confidence            1223334544   6799998 68 48999866   77754444321   00 0111223 33344434443333   222


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCcccccCCcceeeecCC------------C----HHHHHHHHh
Q 012647          360 ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFTGL------------N----KAQSDNMTN  422 (459)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~g~f~~~~l------------~----~~~~~~ll~  422 (459)
                                 ...++.+++-++|.+.|+ ++. .|. +..+.-.|.++ .+.+            +    ..+...+++
T Consensus       349 -----------~l~~~~~~~g~~l~~~L~-~l~~~~~-v~~vrG~Gl~~-~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (466)
T PRK07036        349 -----------GLCEHVREVGPYFEERLA-SLRELPL-VGDVRGDHLMA-CVECVADKGSKALLPEDIAIGQRIDRHCQE  414 (466)
T ss_pred             -----------CHHHHHHHHHHHHHHHHH-HhccCCC-EEEEEeeceEE-EEEEccCccccCCCCchhHHHHHHHHHHHH
Confidence                       234455555555555555 431 110 11222333332 2211            0    123445555


Q ss_pred             cccEEEcCCC---cEEEc-cCChhhHHHHHHHHHHHHhhc
Q 012647          423 KWHVYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       423 ~~gI~v~~gg---Ris~~-~~~~e~i~~~~~~l~~~~~~~  458 (459)
                       +||.+.+.|   |++.. ..++++|+++++++.++++++
T Consensus       415 -~Gvl~~~~~~~~~l~Ppl~it~~~id~~~~~l~~al~~~  453 (466)
T PRK07036        415 -RGLLVRPLEHLCVLSPPLIITRAQIDEIVAILRAAIEET  453 (466)
T ss_pred             -CCcEEeecCCEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence             699998865   55533 238999999999998888653

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.60  E-value=1.1e-14  Score=137.45  Aligned_cols=252  Identities=19%  Similarity=0.097  Sum_probs=162.6

Q ss_pred             cHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEE
Q 012647          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLI  182 (459)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv  182 (459)
                      .|.+.+++.+... +. ..|+......++.+.+++++..        +..++  +.+||.++.++.+.  .+.|++.|++
T Consensus         8 ~~~m~~a~~~a~~-gd-~~Yg~D~~~~~l~~~i~~l~g~--------e~a~f--~~sGT~An~~al~~--~~~~~~~vi~   73 (290)
T PF01212_consen    8 TPAMLEAMAAANV-GD-DAYGEDPTTARLEERIAELFGK--------EAALF--VPSGTMANQLALRA--HLRPGESVIC   73 (290)
T ss_dssp             -HHEEHHHHHTTS-B--CCTTSSHHHHHHHHHHHHHHTS--------SEEEE--ESSHHHHHHHHHHH--HHHTTEEEEE
T ss_pred             CHHHHHHHHcccc-CC-cccCCChhHHHHHHHHHHHcCC--------CEEEE--eCCCChHHHHHHHH--HHhcCCceec
Confidence            7889999966553 33 3698888999999999999743        34556  79999999998443  3579999999


Q ss_pred             cCCCCcc---hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCcEEEEeCCCCCCC-CCCCCHHHHHHHH
Q 012647          183 SSPTWGN---HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGSFILLHGCAHNPT-GIDPTPEQWEKIA  255 (459)
Q Consensus       183 ~~p~y~~---~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~ii~~~p~NPT-G~~~s~~~l~~i~  255 (459)
                      ..+++..   ........|++++.++..  +++.+|++++++.+..   +...+.+|.+.+++|-. |+++|.+++++|.
T Consensus        74 ~~~aHi~~~E~ga~~~~~G~~~~~l~~~--~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~  151 (290)
T PF01212_consen   74 ADTAHIHFDETGAIEELSGAKLIPLPSD--DDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAIS  151 (290)
T ss_dssp             ETTEHHHHSSTTHHHHHTTCEEEEEBEC--TGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHH
T ss_pred             cccceeeeeccchhhHhcCcEEEECCCc--ccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHH
Confidence            9987642   223335689999999873  3378999999999987   22467888889999885 8999999999999


Q ss_pred             HHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHh
Q 012647          256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKR  335 (459)
Q Consensus       256 ~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~  335 (459)
                      ++|++||+.++.|.+--.-...   ....+++.+.  ..-+.+..|++|.+++++   |.+  ++.+++.++......++
T Consensus       152 ~~a~~~gl~lhmDGARl~~a~~---~~~~~~~e~~--~~~D~v~~~~tK~~g~~~---Gav--l~~~~~~i~~~~~~~k~  221 (290)
T PF01212_consen  152 ELAREHGLPLHMDGARLANAAA---ALGVSLAEIA--AGADSVSFGGTKNGGAPG---GAV--LAGNKEFIAKARRQRKR  221 (290)
T ss_dssp             HHHHHHT-EEEEEETTHHHHHC---HHHHHHHHHH--TTSSEEEEETTSTT-SSS---EEE--EEESHHHHHHHHHHHHH
T ss_pred             HHHHhCceEEEEehhhHHHhhh---cccccHHHHh--hhCCEEEEEEEccccccc---ceE--EEechHHHHHHHHHHHH
Confidence            9999999999999994322110   0111233332  234566779999998774   777  45677755544443332


Q ss_pred             hccccccCCchHHH-----HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          336 LARPMYSNPPVHGA-----RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       336 ~~~~~~~~~~~~~~-----~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                      ....+. ..-.+++     ..+...++.      |    .....+..++.+.|.+.|+ .+|
T Consensus       222 ~gg~~~-~~G~~~a~~~~~~~~l~~l~~------~----~~~~~~~~~~A~~La~~l~-~~~  271 (290)
T PF01212_consen  222 LGGGMR-QAGVLAAAELYQFAALRALEL------W----LERARHANAMAKRLAAGLE-ALG  271 (290)
T ss_dssp             HTHHHH-HTTHHHHHHHHHHHHHCHEEC------S----HHHHHCHHHHHHCHHHCHH-EEC
T ss_pred             hccCee-ecceeeeechhhHHHHHHHHh------h----HHHHHHHHHHHHHHHHHHH-HCC
Confidence            211111 0112221     122222221      1    2334555566788888888 876

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PRK07483 hypothetical protein; Provisional

Probab=99.59  E-value=3e-12  Score=129.02  Aligned_cols=338  Identities=12%  Similarity=0.104  Sum_probs=184.1

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC--CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...+|+..|..-...++.  +|.|.+++++.++...  ...+.......+|.+.+++.....      .+.+.+  +++
T Consensus        29 G~~ylD~~~g~~~~~lGh~--~p~v~~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~------~~~v~f--~~s   98 (443)
T PRK07483         29 GKRYLDASGGAAVSCLGHS--HPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLVAAAPAG------LEHVYF--VSG   98 (443)
T ss_pred             CCEEEEcCccHhhhccCCC--CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCC------CCEEEE--cCC
Confidence            4578899887543333443  7889999998886531  011112222234444444432111      257888  999


Q ss_pred             chhHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchHHH-hhhCC------------CCeeeeeeecCCCCCC------
Q 012647          160 GTGSLRLAAALIERYF-----PG-AKVLISSPTWGNHKNI-FNDAR------------VPWSEYRYYDPKTVGL------  214 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~-----~g-d~Vlv~~p~y~~~~~~-~~~~G------------~~v~~v~~~~~~~~~~------  214 (459)
                      |++|++.+.++...+.     +| .+|+...-+|.+.... +...|            ..+..+|..  ..+..      
T Consensus        99 GsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~  176 (443)
T PRK07483         99 GSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPC--YAYREQRAGES  176 (443)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCC--ccccccccCCC
Confidence            9999999998887662     33 5788888888765321 11111            011222211  00110      


Q ss_pred             -------CHHHHHHHHHc-CCCCcEEEEeCCCCC-CCC-CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChh
Q 012647          215 -------DFEGMIADIKA-APGGSFILLHGCAHN-PTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDAS  284 (459)
Q Consensus       215 -------d~e~l~~~i~~-~~~~~~~ii~~~p~N-PTG-~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~  284 (459)
                             .++.+++.+.. .++....+|+...+- -.| ..++++-+++|.++|++||+++|.||+..+++-.+   ..+
T Consensus       177 ~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG---~~~  253 (443)
T PRK07483        177 DEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTG---TLF  253 (443)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCc---HHH
Confidence                   02556665542 223455555554442 235 45678889999999999999999999988886321   223


Q ss_pred             HHHHHHhcCCeEEEEEcCCcCcccCCC-CcceEEEEeCChhHHHHHHHHHHh-hccccccCCchHHHHHHHHH---hCCh
Q 012647          285 SVRLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARVKSQLKR-LARPMYSNPPVHGARIVANV---VGNP  359 (459)
Q Consensus       285 ~~~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---L~~~  359 (459)
                      .... .+..++++   .++|.++ .|+ .+|.+++   +++..+.+...-.. ...+++ +.+.++..++...   ++++
T Consensus       254 a~~~-~gv~PDiv---~~gK~l~-gG~~Pi~av~~---~~~i~~~~~~~~~~~~h~~T~-~gnpl~~aaa~a~l~~i~~~  324 (443)
T PRK07483        254 ACEE-DGVAPDLV---TIAKGLG-AGYQPIGAVLA---SDRIYDAIADGSGFFQHGHTY-LGHATACAAALAVQRVIAED  324 (443)
T ss_pred             HHhh-cCCCCCee---eehhhhc-cCccccEEEEE---cHHHHHHHhcCCCccccCCCC-CCCHHHHHHHHHHHHHHHhc
Confidence            3222 23345555   5699998 785 8999866   77744433211000 122233 3333443344333   3332


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCCCCCcccccCCcceeee-c--C------CC------HHHHHHHH
Q 012647          360 ALFDEWKAEMEMMAGRIKNVRQKLFDSLSA---KDKSGKDWSFILRQIGMFSF-T--G------LN------KAQSDNMT  421 (459)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~~g~~~~~~~~~~~~g~f~~-~--~------l~------~~~~~~ll  421 (459)
                                 ...++.++.-++|.+.|++   +++.   +..+.-.|-++.. +  +      .+      ..+.+.++
T Consensus       325 -----------~l~~~~~~~g~~l~~~L~~l~~~~~~---i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (443)
T PRK07483        325 -----------GLLANVRARGEQLRARLRERLGQHPH---VGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAM  390 (443)
T ss_pred             -----------CHHHHHHHHHHHHHHHHHHHHhcCCC---eeeEeecccEEEEEEeecccccCCCCchhhHHHHHHHHHH
Confidence                       2334444455555555540   2221   1122233322211 1  1      00      12345666


Q ss_pred             hcccEEEcCC--------C---cEEEc-cCChhhHHHHHHHHHHHHhhc
Q 012647          422 NKWHVYMTKD--------G---RISLA-GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       422 ~~~gI~v~~g--------g---Ris~~-~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      + +||.+.+.        |   ||.-. .++++++++++++|.++++++
T Consensus       391 ~-~Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~  438 (443)
T PRK07483        391 A-RGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDAA  438 (443)
T ss_pred             H-CCcEEEecCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            6 59998653        2   55432 238999999999999998763

>PRK12403 putative aminotransferase; Provisional

Probab=99.58  E-value=3e-12  Score=129.55  Aligned_cols=340  Identities=12%  Similarity=0.033  Sum_probs=181.2

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CCCC--CCCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y--~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      +...||+..|..-..-+..  +|.|.+++.+.+++.. ...+  .+.....+|.+.+++++...      -+.+++  ++
T Consensus        53 G~~ylD~~~g~~~~~lGh~--hp~v~~A~~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~------~~~v~f--~~  122 (460)
T PRK12403         53 GKRYLDGMSGLWCTNLGYG--RKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLLPGH------YSHAIY--TN  122 (460)
T ss_pred             CCEEEECchhHHhhcCCCC--CHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCC------cCEEEE--eC
Confidence            4578898877542333543  6889999998886521 0111  12223345555555553211      257888  99


Q ss_pred             cchhHHHHHHHHHHHh-----CCCC-EEEEcCCCCcchHH-HhhhCCCC-----------eeeeeeecC--CCCCC----
Q 012647          159 SGTGSLRLAAALIERY-----FPGA-KVLISSPTWGNHKN-IFNDARVP-----------WSEYRYYDP--KTVGL----  214 (459)
Q Consensus       159 ggt~a~~l~~~~~~~~-----~~gd-~Vlv~~p~y~~~~~-~~~~~G~~-----------v~~v~~~~~--~~~~~----  214 (459)
                      +|++|++.+.++...+     .+++ .|+...-+|.+... .+...|.+           +..+|....  ..+.+    
T Consensus       123 SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  202 (460)
T PRK12403        123 SGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAE  202 (460)
T ss_pred             CcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHH
Confidence            9999999998887665     1333 35555666765422 22222211           222321100  00011    


Q ss_pred             ----CHHHHHHHHHc-CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH
Q 012647          215 ----DFEGMIADIKA-APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (459)
Q Consensus       215 ----d~e~l~~~i~~-~~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~  288 (459)
                          +.+.+++.+.+ .++....+|+.....-.|.+ .+++-+++|.++|++||+++|.||+..+++-.+   ..+....
T Consensus       203 ~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG---~~~a~e~  279 (460)
T PRK12403        203 FGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTG---EWFAHEH  279 (460)
T ss_pred             HHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---hhhhhhh
Confidence                13456555532 22345566666666666765 567779999999999999999999987775321   1222222


Q ss_pred             HHhcCCeEEEEEcCCcCcccCCC-CcceEEEEeCChhHHHHHHHHHHhh-ccccccCCchHHHHHHHHH---hCChhhHH
Q 012647          289 FATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARVKSQLKRL-ARPMYSNPPVHGARIVANV---VGNPALFD  363 (459)
Q Consensus       289 ~~~~~~~~i~~~S~SK~~~~~G~-RiG~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---L~~~~~~~  363 (459)
                       .+-.++++   .++|.++ .|. .+|.+++   +++..+.+...-... ...++ +.+.++..++...   +++.+   
T Consensus       280 -~gv~PDiv---~~gK~lg-gG~~Piga~v~---~~~i~~~~~~~~~~~~~~~T~-~gnPl~~Aaala~L~~i~~~~---  347 (460)
T PRK12403        280 -FGFEPDTL---SIAKGLT-SGYVPMGGLVL---SKRIAEALVEQGGVFAHGLTY-SGHPVAAAVAIANLKALRDEG---  347 (460)
T ss_pred             -cCCCCCeE---EEccccc-ccccceEEEEE---CHHHHHHHhcCCCccccCCCC-CCCHHHHHHHHHHHHHHHhcc---
Confidence             22234444   4899998 674 8998865   677444432210111 11222 2333333333333   33222   


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHhh---ccCCCCCcccccCCcceee--ecC-------CCH--H----HHHHHHhcc
Q 012647          364 EWKAEMEMMAGRIK-NVRQKLFDSLSA---KDKSGKDWSFILRQIGMFS--FTG-------LNK--A----QSDNMTNKW  424 (459)
Q Consensus       364 ~~~~~~~~~~~~~~-~~~~~l~~~L~~---~~g~~~~~~~~~~~~g~f~--~~~-------l~~--~----~~~~ll~~~  424 (459)
                              ..++.+ ++-+++.+.|++   +++.   +..+.-.|.++.  +..       ...  .    ....+++ +
T Consensus       348 --------l~~~~~~~~g~~l~~~L~~l~~~~~~---i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  415 (460)
T PRK12403        348 --------VVTRVKDDTGPYLQRCLREVFGDHPL---VGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFE-E  415 (460)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHHhcCCC---EEeEeecceEEEEEEccCccccccccchhHHHHHHHHHHHh-C
Confidence                    223332 334444444430   3331   122223333321  111       010  1    1233445 6


Q ss_pred             cEEEcCCC---cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          425 HVYMTKDG---RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       425 gI~v~~gg---Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                      ||.+.+.|   |++..- +++++++++++++.++++++
T Consensus       416 Gll~~~~~~~~~l~Ppl~it~~eid~~~~~l~~al~~~  453 (460)
T PRK12403        416 GVIIRSTLGRMIMAPALVAGRAEIDELVDKTRIAVDRT  453 (460)
T ss_pred             CEEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99998754   555432 38999999999999999865

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.58  E-value=5.6e-13  Score=127.55  Aligned_cols=170  Identities=18%  Similarity=0.152  Sum_probs=126.7

Q ss_pred             ccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh----hCCCCee
Q 012647          127 GLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVPWS  202 (459)
Q Consensus       127 g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~G~~v~  202 (459)
                      -...+.+.+++...+        .+.+.  .++|..|+..+  +...+.+|++|++....|.+...+++    .+|++..
T Consensus        78 t~~~le~~iaal~ga--------~~~l~--fsSGmaA~~~a--l~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~  145 (409)
T KOG0053|consen   78 TRDVLESGIAALEGA--------AHALL--FSSGMAAITVA--LLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGD  145 (409)
T ss_pred             chHHHHHHHHHHhCC--------ceEEE--ecccHHHHHHH--HHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceee
Confidence            345677777777433        33555  78899888888  55557799999999999988766655    5677777


Q ss_pred             eeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCC
Q 012647          203 EYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDND  282 (459)
Q Consensus       203 ~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~  282 (459)
                      .++.+       |++.+++++++   ++.++.+-+|.||+..+   .++++|.++|+++|+++++|+.+.....-    +
T Consensus       146 ~vd~~-------~~~~~~~~i~~---~t~~V~~ESPsNPll~v---~DI~~l~~la~~~g~~vvVDnTf~~p~~~----~  208 (409)
T KOG0053|consen  146 FVDVD-------DLKKILKAIKE---NTKAVFLESPSNPLLKV---PDIEKLARLAHKYGFLVVVDNTFGSPYNQ----D  208 (409)
T ss_pred             eechh-------hHHHHHHhhcc---CceEEEEECCCCCcccc---ccHHHHHHHHhhCCCEEEEeCCcCccccc----C
Confidence            77652       67888888886   89999999999999999   78889999999999999999998776431    1


Q ss_pred             hhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHH
Q 012647          283 ASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQL  333 (459)
Q Consensus       283 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~  333 (459)
                      ..       ..+-+|++.|.+|.++-.+-=+|.+++ ...++...++....
T Consensus       209 pL-------~lGADIV~hSaTKyi~Ghsdvi~G~iv-~n~~~~~~~l~~~~  251 (409)
T KOG0053|consen  209 PL-------PLGADIVVHSATKYIGGHSDVIGGSVV-LNSEELASRLKFLQ  251 (409)
T ss_pred             hh-------hcCCCEEEEeeeeeecCCcceeeeEEe-cCcHHHHHHHHHHH
Confidence            11       123579999999999866655666643 33467555554443

>PRK07480 putative aminotransferase; Validated

Probab=99.57  E-value=3.3e-12  Score=129.05  Aligned_cols=336  Identities=12%  Similarity=0.049  Sum_probs=185.0

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCC-C---CCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeec
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-K---EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~---~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (459)
                      +...||+..|..-..-++.  .|.|.+++.+.++.... .   .+ +.....+|.+.+++.+...      -+.+.+  +
T Consensus        49 G~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~q~~~~~~~~~~~~~-~~~~~~~lae~L~~~~p~~------~~~v~f--~  117 (456)
T PRK07480         49 GNKILDGMAGLWCVNVGYG--RKELADAAARQMRELPYYNTFFKT-THPPAIELAAKLAEVAPPG------FNHVFF--T  117 (456)
T ss_pred             CCEEEEccchHHHhcCCCC--CHHHHHHHHHHHHhcCCccccccc-CCHHHHHHHHHHHHhCCCC------cCEEEE--e
Confidence            4578898877532222333  78899998888864210 0   12 2233344555555543211      257888  9


Q ss_pred             ccchhHHHHHHHHHHHhC-----C-CCEEEEcCCCCcchHHHh-hhCCC------------CeeeeeeecCCCC----CC
Q 012647          158 LSGTGSLRLAAALIERYF-----P-GAKVLISSPTWGNHKNIF-NDARV------------PWSEYRYYDPKTV----GL  214 (459)
Q Consensus       158 ~ggt~a~~l~~~~~~~~~-----~-gd~Vlv~~p~y~~~~~~~-~~~G~------------~v~~v~~~~~~~~----~~  214 (459)
                      ++|++|++.+.++...+.     + ..+|+...-+|.+..-.. ...|.            .+..+|.  +..+    ..
T Consensus       118 ~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~~  195 (456)
T PRK07480        118 NSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQ--PYWFGEGGDM  195 (456)
T ss_pred             CCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCC--CcccccccCC
Confidence            999999999988876651     3 357888888887643211 11111            1111221  1000    01


Q ss_pred             C--------HHHHHHHHHc-CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChh
Q 012647          215 D--------FEGMIADIKA-APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDAS  284 (459)
Q Consensus       215 d--------~e~l~~~i~~-~~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~  284 (459)
                      +        ++.+++.+.. .++....+|+...+.-.|.+ .+.+-+++|.++|++||+++|.||++.+++-.+   ..+
T Consensus       196 ~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~~  272 (456)
T PRK07480        196 TPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTG---EWF  272 (456)
T ss_pred             ChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc---chh
Confidence            1        2555555532 23355666666666666775 566679999999999999999999988885321   222


Q ss_pred             HHHHHHhcCCeEEEEEcCCcCcccCCC-CcceEEEEeCChhHHHHHHHHHHh-hccccccCCchHHHHHHHHHh---CCh
Q 012647          285 SVRLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARVKSQLKR-LARPMYSNPPVHGARIVANVV---GNP  359 (459)
Q Consensus       285 ~~~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L---~~~  359 (459)
                      .... .+..++++   +|+|.++ .|+ .+|.+++   +++..+.+...... ....++ +.+.++..++...|   +++
T Consensus       273 a~~~-~gv~PDiv---~~gK~l~-gG~~Pi~av~~---~~~i~~~~~~~~~~~~~~~T~-~gnpl~~Aaa~a~L~~l~~~  343 (456)
T PRK07480        273 GSQH-FGIKPDLM---TIAKGLT-SGYIPMGAVGV---GDRVAEVLIEEGGEFNHGFTY-SGHPVAAAVALANLRILRDE  343 (456)
T ss_pred             hhhh-cCCCCCee---eeehhhc-cCCccceEEEE---cHHHHHHHhcCCCCcccCCCC-CcCHHHHHHHHHHHHHHHhC
Confidence            3222 23334544   6799998 674 7899866   77744443210011 122233 33344444443333   222


Q ss_pred             hhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcc---CCCCCcccccCCcceeee--cCC--------C-----HHHHHHH
Q 012647          360 ALFDEWKAEMEMMAGRI-KNVRQKLFDSLSAKD---KSGKDWSFILRQIGMFSF--TGL--------N-----KAQSDNM  420 (459)
Q Consensus       360 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~~---g~~~~~~~~~~~~g~f~~--~~l--------~-----~~~~~~l  420 (459)
                                 ...++. +++-++|.+.|+ ++   +.   +..+.-.|.++.+  ..-        .     ..+...+
T Consensus       344 -----------~l~~~~~~~~g~~l~~~l~-~l~~~~~---i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~  408 (456)
T PRK07480        344 -----------GIVERVRDDTGPYLQKRLR-ELADHPL---VGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHC  408 (456)
T ss_pred             -----------CHHHHHHHHHHHHHHHHHH-HhhcCCC---eeeEEeecceEEEEEeccccccccCcchhhHHHHHHHHH
Confidence                       223333 244445555554 33   21   1122233333321  110        0     1123355


Q ss_pred             HhcccEEEcCCC---cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          421 TNKWHVYMTKDG---RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       421 l~~~gI~v~~gg---Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                      ++ +||.+.+.|   ||+... .++++|++++++|.++++++
T Consensus       409 ~~-~Gll~~~~~~~l~~~Ppl~it~~eid~~~~~l~~al~~~  449 (456)
T PRK07480        409 FA-NGLIMRAVGDRMIISPPLVITHAEIDELVEKARKALDAT  449 (456)
T ss_pred             HH-CCcEEeecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            55 699998765   666443 28999999999999998764

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.57  E-value=3.8e-14  Score=138.38  Aligned_cols=195  Identities=17%  Similarity=0.085  Sum_probs=128.8

Q ss_pred             CCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCe
Q 012647          122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPW  201 (459)
Q Consensus       122 Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v  201 (459)
                      ..|..-..+..+.+|+.+..+       +-.++  ++|+|.++..+  +.+.+.|||+|+++..++-.....+...|+++
T Consensus        62 ~~p~G~I~eAe~~aA~~fGAd-------~t~fl--vnGsT~g~~a~--i~a~~~~gd~VLv~RN~HkSv~~alil~ga~P  130 (417)
T PF01276_consen   62 HDPEGIIKEAEELAARAFGAD-------KTFFL--VNGSTSGNQAM--IMALCRPGDKVLVDRNCHKSVYNALILSGAIP  130 (417)
T ss_dssp             TTTBTHHHHHHHHHHHHHTES-------EEEEE--SSHHHHHHHHH--HHHHTTTTCEEEEETT--HHHHHHHHHHTEEE
T ss_pred             cCCccHHHHHHHHHHHhcCCC-------eEEEE--ecCchHHHHHH--HHHhcCCCCEEEEcCCcHHHHHHHHHHcCCeE
Confidence            334444567777777776543       44666  89999999998  67778999999999999998888999999999


Q ss_pred             eeeeeecCCCC----CCCH-----HHHHHHHHcCCCCcE--EEEeCCCCCCC--CCCCCHHHHHHHHHHHHhcCCeeEEe
Q 012647          202 SEYRYYDPKTV----GLDF-----EGMIADIKAAPGGSF--ILLHGCAHNPT--GIDPTPEQWEKIADVIQEKNHIPFFD  268 (459)
Q Consensus       202 ~~v~~~~~~~~----~~d~-----e~l~~~i~~~~~~~~--~ii~~~p~NPT--G~~~s~~~l~~i~~l~~~~~~~ii~D  268 (459)
                      ++++.. .+.+    ++++     +.+++++++.++...  ++++   .|||  |++   .++++|+++|+++++.|++|
T Consensus       131 vyi~p~-~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvl---t~PTY~Gv~---~di~~I~~~~h~~~~~llvD  203 (417)
T PF01276_consen  131 VYIPPE-DNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVL---TSPTYYGVC---YDIKEIAEICHKHGIPLLVD  203 (417)
T ss_dssp             EEEEEE-E-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEE---ESS-TTSEE---E-HHHHHHHHCCTECEEEEE
T ss_pred             EEecCC-ccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEE---eCCCCCeEE---ECHHHHHHHhcccCCEEEEE
Confidence            999875 3323    4566     999999998765443  2444   3555  999   78889999999999999999


Q ss_pred             ccCCCCC-CCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCCh-hHHHHHHHHHHhh
Q 012647          269 VAYQGFA-SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS-DLAARVKSQLKRL  336 (459)
Q Consensus       269 eay~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~-~~~~~~~~~~~~~  336 (459)
                      |||.... +.+...+...+.......+.++++.|.+|.+  +++.-+.++-+.++. -..+++.+.+...
T Consensus       204 EAhGah~~F~~lp~~a~~~gad~~~~~~~~vvqS~HKtL--~altQts~lh~~~~~~v~~~~~~~~l~~~  271 (417)
T PF01276_consen  204 EAHGAHFGFHPLPRSALALGADRPNDPGIIVVQSTHKTL--PALTQTSMLHVKGDRIVDHERVNEALSMH  271 (417)
T ss_dssp             -TT-TTGGCSGGGTTCSSTTSS-CTSBEEEEEEEHHHHS--SS-TT-EEEEEETCCCTTHHHHHHHHHHH
T ss_pred             ccccccccCCCCccchhhccCccccccceeeeechhhcc--cccccceEEEecCCCcccHHHHHHHHHHH
Confidence            9987653 2211111110000001234679999999997  567777766555554 3456676666543

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.57  E-value=2.2e-12  Score=129.82  Aligned_cols=330  Identities=14%  Similarity=0.119  Sum_probs=176.2

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC-CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL-PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~-~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      +...||+..|..-...|..  .|.|.+++.+.++...  .+. +.....++.+.+++....       .+.+.+  +++|
T Consensus        47 G~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~q~~~~~--~~~~~~~~~~~la~~l~~~~p~-------~~~v~f--~~sG  113 (431)
T PRK06209         47 GNEYIEYGMGLRAVGLGHA--YPPVVEAVREALQDGC--NFTRPSAIELDAAESFLELIDG-------ADMVKF--CKNG  113 (431)
T ss_pred             CCEEEEccccccchhcCCC--CHHHHHHHHHHHHhCc--CCCCCCHHHHHHHHHHHHhCCc-------cceEEE--ecCH
Confidence            4578898877542333443  7889999998887543  232 222222455666655321       257888  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEc-CCCCcchHHHh-----hhCCCC--ee--eeeeecCCCCCCCHHHHHHHHHcCCCCc
Q 012647          161 TGSLRLAAALIERYFPGAKVLIS-SPTWGNHKNIF-----NDARVP--WS--EYRYYDPKTVGLDFEGMIADIKAAPGGS  230 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~-~p~y~~~~~~~-----~~~G~~--v~--~v~~~~~~~~~~d~e~l~~~i~~~~~~~  230 (459)
                      ++|++.+.++.+.+....+|+.. .-+|..+....     ...|..  ..  .+.+  .   --|++.+++.++..++..
T Consensus       114 seA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~--~---~~d~~~l~~~l~~~~~~~  188 (431)
T PRK06209        114 SDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTF--R---YNDIASLEALFEDHPGRI  188 (431)
T ss_pred             HHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhcccccc--C---CCCHHHHHHHHHhCCCCE
Confidence            99999998887666443456554 22332211100     001110  00  1111  1   127899998887533344


Q ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCC
Q 012647          231 FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA  310 (459)
Q Consensus       231 ~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G  310 (459)
                      .++++...   .|...+.+.+++|.++|++||+++|+||+..++...     ...........+++   .+++|.+| .|
T Consensus       189 aavi~Epv---~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~-----~~g~~~~~gv~PDi---~t~gK~lg-gG  256 (431)
T PRK06209        189 ACVILEPA---TADEPQDGFLHEVRRLCHENGALFILDEMITGFRWH-----MRGAQKLYGIVPDL---SCFGKALG-NG  256 (431)
T ss_pred             EEEEEccc---cCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcC-----cchhhHHhCCCcce---eeehhhhc-CC
Confidence            45554322   355778899999999999999999999998766432     11222222223343   47899999 68


Q ss_pred             CCcceEEEEeCChhHHHH--HHHH-HHh-hccccccCCchHHHHHH---HHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012647          311 ERIGAMNVVCSSSDLAAR--VKSQ-LKR-LARPMYSNPPVHGARIV---ANVVGNPALFDEWKAEMEMMAGRIKNVRQKL  383 (459)
Q Consensus       311 ~RiG~~~~v~~~~~~~~~--~~~~-~~~-~~~~~~~~~~~~~~~~~---~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l  383 (459)
                      +.+|++++   +++..+.  +... ... .....+.+++.++..++   ...+++.++       +++.++.-+..++.|
T Consensus       257 ~p~~av~~---~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~-------~~~~~~~g~~l~~~L  326 (431)
T PRK06209        257 FAVSALAG---KREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDV-------IERLHEQGAKLAAGV  326 (431)
T ss_pred             cccEEEEE---HHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCH-------HHHHHHHHHHHHHHH
Confidence            88899865   6663332  1000 001 00111223333333333   333333322       223333333333333


Q ss_pred             HHHHhhccCCCCCcccccCCccee--eec--C---C-CH----HHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHHH
Q 012647          384 FDSLSAKDKSGKDWSFILRQIGMF--SFT--G---L-NK----AQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI  451 (459)
Q Consensus       384 ~~~L~~~~g~~~~~~~~~~~~g~f--~~~--~---l-~~----~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~l  451 (459)
                      .+... +++++.   .+...|.++  .++  +   . ..    .+.+++++ +||.+.| -+|+... ++++|+++++++
T Consensus       327 ~~~~~-~~~~~~---~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~p~-l~is~~h-t~~dId~~l~~l  399 (431)
T PRK06209        327 NEAAA-EHGLQD---HVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIR-RGVLMPS-LVVSYAH-GDADIERTIDAV  399 (431)
T ss_pred             HHHHH-hCCCCe---EEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHH-CCccccc-ccccccC-CHHHHHHHHHHH
Confidence            33333 344211   111122222  111  1   1 11    23456656 5998743 3556444 999999999999


Q ss_pred             HHHHhhc
Q 012647          452 IDSYHNV  458 (459)
Q Consensus       452 ~~~~~~~  458 (459)
                      .++++++
T Consensus       400 ~~~l~~~  406 (431)
T PRK06209        400 HGALGVY  406 (431)
T ss_pred             HHHHHHH
Confidence            9988764

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.57  E-value=4.6e-12  Score=128.18  Aligned_cols=343  Identities=11%  Similarity=0.019  Sum_probs=185.2

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCC--CCCCcccHHHHHHHHHHHhcCCCCcccc-CceEEeecc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE--YLPIEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGL  158 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~--Y~~~~g~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~  158 (459)
                      +...+|+..|.-...-++.  +|.|.+++.+.+++.....  +.+.....+|-+.+++.+...    ... +.+.+ .++
T Consensus        62 G~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~~----~~~~~~v~f-~~~  134 (464)
T PRK06938         62 GRQFIDCLAGAGTLALGHN--HPVVIEAIQQVLADELPLHTLDLTTPVKDQFVQDLFASLPEA----FAREAKIQF-CGP  134 (464)
T ss_pred             CCEEEEccCCccccccCCC--CHHHHHHHHHHHHhhhcccccccCCHHHHHHHHHHHHhCccc----ccccceEEE-eCC
Confidence            4578888777642333443  7889999988875422111  112222233444444432111    000 24544 136


Q ss_pred             cchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhh-CC------------CCeeeeeeecCCC--CC--------CC
Q 012647          159 SGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-AR------------VPWSEYRYYDPKT--VG--------LD  215 (459)
Q Consensus       159 ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~G------------~~v~~v~~~~~~~--~~--------~d  215 (459)
                      +|++|++.+.++.+......+|+...-+|.+....... .|            ..+..+|......  ++        .+
T Consensus       135 SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  214 (464)
T PRK06938        135 TGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRAN  214 (464)
T ss_pred             CcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHH
Confidence            99999999988877665557899988888765432221 11            0223343311100  00        13


Q ss_pred             HHHHHHHHHcCC---CCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh
Q 012647          216 FEGMIADIKAAP---GGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT  291 (459)
Q Consensus       216 ~e~l~~~i~~~~---~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~  291 (459)
                      ++.+++.+.+..   +....+|+-..+.--|.+ ++++-++++.++|++||+++|.||+..+++-.+   ..+.... .+
T Consensus       215 ~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG---~~~a~e~-~g  290 (464)
T PRK06938        215 LHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTG---KMFAFEH-AG  290 (464)
T ss_pred             HHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---HHHHHHh-cC
Confidence            667777776421   235555655555555765 568889999999999999999999988886321   2233222 23


Q ss_pred             cCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012647          292 RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEM  371 (459)
Q Consensus       292 ~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~  371 (459)
                      -.++++   .++|.+| .|+.+|.+++   .++ ++.+.   ......++ +.+.++..++...|+   +.   ++  +.
T Consensus       291 v~PDiv---~~gKglg-gG~PlsAv~~---~~~-~~~~~---~~~~~~T~-~gnpla~Aaa~a~L~---~l---~~--~~  350 (464)
T PRK06938        291 IIPDVV---VLSKAIG-GSLPLAVVVY---REW-LDTWQ---PGAHAGTF-RGNQMAMAAGSATLR---YI---KE--HR  350 (464)
T ss_pred             CCCCEE---Eeecccc-CCCceEEEee---hhH-hhccC---CCCCCCCC-CcCHHHHHHHHHHHH---HH---HH--hH
Confidence            345555   4699998 7899999865   444 22221   11122333 333444444433332   11   00  12


Q ss_pred             HHHHHHHHHHHHHHHHhhccC--CCCCcccccCCcceeee--cCC------------C----HHHHHHHHhcccEEEcCC
Q 012647          372 MAGRIKNVRQKLFDSLSAKDK--SGKDWSFILRQIGMFSF--TGL------------N----KAQSDNMTNKWHVYMTKD  431 (459)
Q Consensus       372 ~~~~~~~~~~~l~~~L~~~~g--~~~~~~~~~~~~g~f~~--~~l------------~----~~~~~~ll~~~gI~v~~g  431 (459)
                      ..++.+++-++|.+.|+ ++.  .|. +..+.-.|-++..  ..-            +    ..+...+++ +||.+.++
T Consensus       351 l~~~~~~~G~~l~~~L~-~l~~~~~~-i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~  427 (464)
T PRK06938        351 LAEHAAAMGERLREHLR-QLQRDYPQ-LGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLR-RGLILELG  427 (464)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHhCCC-eeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHH-CCeEEeec
Confidence            33444444555555554 331  110 1122223322211  110            1    123445555 69999774


Q ss_pred             C------cEEEc-cCChhhHHHHHHHHHHHHhhc
Q 012647          432 G------RISLA-GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       432 g------Ris~~-~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      |      |+..+ ..++++++++++++.+++.++
T Consensus       428 g~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~  461 (464)
T PRK06938        428 GRHGSVVRFLPPLIITAEQIDEVAEIFAEAVAAA  461 (464)
T ss_pred             CCCCCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence            3      55422 239999999999999998763

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.57  E-value=8.8e-13  Score=131.94  Aligned_cols=282  Identities=12%  Similarity=0.054  Sum_probs=181.1

Q ss_pred             ccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhC---C
Q 012647          100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF---P  176 (459)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~---~  176 (459)
                      +.+++...+.+...+..+. ..+....+..++.+.+..++....+.+- .-.=.+  |.|||+++.++..+.....   .
T Consensus        72 ~~~~~~a~~~~~~~~~~nl-~d~~~~p~a~~~E~~~v~~l~~l~~~~~-~~~G~~--t~GgTean~lal~aar~~~~~~~  147 (460)
T COG0076          72 TRVPPVAAELLVSALNKNL-GDPDESPAAAELEERVVNMLSDLLGAPE-EASGTF--TSGGTEANLLALLAARERWRKRA  147 (460)
T ss_pred             CCCHHHHHHHHHHHHhhcC-CCcccChhHHHHHHHHHHHHHHHhCCCC-CCceEE--EcChHHHHHHHHHHHHHHHHHHh
Confidence            4447777788887776543 2222233666777777777766665541 222334  8999999998754433211   1


Q ss_pred             ---CC------EEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEE--EEeCCCCCCCCCC
Q 012647          177 ---GA------KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI--LLHGCAHNPTGID  245 (459)
Q Consensus       177 ---gd------~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~--ii~~~p~NPTG~~  245 (459)
                         +.      +|+++.-.+..+...++..|.+...+|+... +..+|+++++++|.+   .+..  |+-..+..+||.+
T Consensus       148 ~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~-~~~id~~~l~~~i~~---~t~~g~vV~~aGtT~~G~i  223 (460)
T COG0076         148 LAESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPT-DYRIDVDALEEAIDE---NTIGGVVVGTAGTTDTGSI  223 (460)
T ss_pred             hhcccccCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccC-ccccCHHHHHHHHHh---hccCceEEEEecCCCCCcc
Confidence               11      6999999999999999999999999999643 789999999999998   3333  6667799999999


Q ss_pred             CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhH
Q 012647          246 PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDL  325 (459)
Q Consensus       246 ~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~  325 (459)
                         +++++|.++|+++++++++|.||.++...=.+.+..   .+.....-+-+..+++|.+. .-..+||+  +.++++.
T Consensus       224 ---Ddi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~---~~f~l~~vdSIt~d~HK~g~-aP~~~G~i--l~rd~e~  294 (460)
T COG0076         224 ---DDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGR---WDFGLEGVDSITVDGHKYGL-APIGCGVV--LFRDEEA  294 (460)
T ss_pred             ---CCHHHHHHHHHHcCCcEEEEccccceeecccCccch---hhcCCCCceEEEECcccccC-CCCCceEE--EEECHHH
Confidence               999999999999999999999999887421111111   11122234456679999864 44558998  4566643


Q ss_pred             HHHHHHHHHhhcc-----ccccCCchHH-----HHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 012647          326 AARVKSQLKRLAR-----PMYSNPPVHG-----ARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGK  395 (459)
Q Consensus       326 ~~~~~~~~~~~~~-----~~~~~~~~~~-----~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  395 (459)
                      ..+....-.....     ......+..+     +.+....|.        .+.++++.++..+..+++.+.|+ +.|.  
T Consensus       295 l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG--------~eGy~~l~~~~~~~a~~la~~l~-~~~~--  363 (460)
T COG0076         295 LRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLG--------REGYRKLLDRTLELARYLAEELE-KLGD--  363 (460)
T ss_pred             hhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhC--------HhHHHHHHHHHHHHHHHHHHHHH-hCCC--
Confidence            3222221111111     1111111112     222222222        34567888888899999999999 8752  


Q ss_pred             Cccccc-CCcceeeec
Q 012647          396 DWSFIL-RQIGMFSFT  410 (459)
Q Consensus       396 ~~~~~~-~~~g~f~~~  410 (459)
                       ++.+. |.....+|-
T Consensus       364 -~e~~~~p~l~~V~fr  378 (460)
T COG0076         364 -FELVNEPELPIVAFR  378 (460)
T ss_pred             -cEeecCCccceEEEE
Confidence             45554 544444443

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.57  E-value=3.2e-12  Score=120.28  Aligned_cols=324  Identities=18%  Similarity=0.244  Sum_probs=200.1

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC------CCcccHHH---HHHHHHHHhcCCCCccccCceE
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL------PIEGLAAF---NKVTAELLFGADNSVLKEQRVA  153 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~------~~~g~~~l---r~aia~~l~~~~~~~~~~~~i~  153 (459)
                      ...|+|-.-++       .+++.|++++...+.+....+|+      -.+-++++   ....++.+++..     --|  
T Consensus        26 ~~~ieLIASEN-------~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~-----~an--   91 (413)
T COG0112          26 REHIELIASEN-------FTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAE-----YAN--   91 (413)
T ss_pred             hhceeeeeccc-------cCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCC-----ccc--
Confidence            37788887665       23889999988877543333332      22222333   333333333321     123  


Q ss_pred             EeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh---hhCC--CCeeeeeeecCCCCCCCHHHHHHHHHcCCC
Q 012647          154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF---NDAR--VPWSEYRYYDPKTVGLDFEGMIADIKAAPG  228 (459)
Q Consensus       154 ~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~---~~~G--~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~  228 (459)
                       +|..+|+.|+..+  +.+++.|||+|+-.+-.+.+|...-   ...|  .+++.++++ .++..+|.|++++.+.+.  
T Consensus        92 -VQPhSGs~AN~av--~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd-~et~~IDyD~~~k~a~e~--  165 (413)
T COG0112          92 -VQPHSGSQANQAV--YLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVD-PETGLIDYDEVEKLAKEV--  165 (413)
T ss_pred             -cCCCCchHHHHHH--HHHHcCCCCeEecccCCCCCcccCCCCCCccceeEEeEecccc-cccCccCHHHHHHHHHHh--
Confidence             3467888888888  6777899999999998777665432   2233  356677775 467899999999998884  


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc
Q 012647          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (459)
Q Consensus       229 ~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (459)
                      ++++++...-..|     -.-+++++.++|.+-|.++++|.++- ++.-++.-.++  +      ....++..|-+|+| 
T Consensus       166 kPK~ii~G~SaY~-----r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P--~------~~AdvVTtTTHKTl-  231 (413)
T COG0112         166 KPKLIIAGGSAYS-----RPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNP--L------PHADVVTTTTHKTL-  231 (413)
T ss_pred             CCCEEEECccccc-----cccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCC--C------CccceEeCCcccCC-
Confidence            5567774322222     23568889999999999999999963 33333221111  1      12578899999997 


Q ss_pred             cCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHH-HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          308 LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIV-ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDS  386 (459)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  386 (459)
                       .|-|=|.+  .+.++++.++    +.....+...+.|..-..++ +-.+.     +..+-.+++..++..++.+.|.+.
T Consensus       232 -rGPrGG~I--l~~~eel~kk----in~aVFPg~qggpl~HviAakaVa~~-----Eal~p~fk~Ya~qVv~NAkaLAe~  299 (413)
T COG0112         232 -RGPRGGII--LTNDEELAKK----INSAVFPGLQGGPLMHVIAAKAVAFK-----EALEPEFKEYAKQVVKNAKALAEA  299 (413)
T ss_pred             -CCCCceEE--EeccHHHHHH----hhhhcCCccCCChHHHHHHHHHHHHH-----HHcChhHHHHHHHHHHHHHHHHHH
Confidence             57777777  4555674444    44333233322222211111 11111     111122467777888888899999


Q ss_pred             HhhccCCCCCcccccCCcceee-ec-----CCCHHHHHHHHhcccEEEcCC-------------C-cEEEc-----cCCh
Q 012647          387 LSAKDKSGKDWSFILRQIGMFS-FT-----GLNKAQSDNMTNKWHVYMTKD-------------G-RISLA-----GLSL  441 (459)
Q Consensus       387 L~~~~g~~~~~~~~~~~~g~f~-~~-----~l~~~~~~~ll~~~gI~v~~g-------------g-Ris~~-----~~~~  441 (459)
                      |. +.|    ++++..-.-..+ .+     +++.+.++.+|++.||.+...             | ||.-.     +..+
T Consensus       300 l~-~~G----~~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e  374 (413)
T COG0112         300 LK-ERG----FKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGE  374 (413)
T ss_pred             HH-HcC----CeEecCCccceEEEEEcccCCCCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCH
Confidence            98 887    465542211222 22     346788999999999987543             3 77522     3367


Q ss_pred             hhHHHHHHHHHHHHhh
Q 012647          442 AKCEYLADAIIDSYHN  457 (459)
Q Consensus       442 e~i~~~~~~l~~~~~~  457 (459)
                      +|++++.+-|.++++.
T Consensus       375 ~e~~~Ia~~I~~vl~~  390 (413)
T COG0112         375 AEMEEIADLIADVLDG  390 (413)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            8999999999988875

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.56  E-value=5.1e-12  Score=127.33  Aligned_cols=336  Identities=11%  Similarity=0.042  Sum_probs=180.6

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHH--HHHHHhhcC-----CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEE
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKK--AENLMLERG-----ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVAT  154 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~--a~~~~~~~~-----~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (459)
                      +...+|+..|..-...|+.  +|.|.+  ++++.+++-     ....| ......++-+.+++.... .    .-+.+.+
T Consensus        44 G~~ylD~~~g~~~~~lGh~--~p~v~~~~ai~~ql~~l~~~~~~~~~~-~~~~~~~la~~l~~~~~p-~----~~~~v~f  115 (443)
T PRK08297         44 GRRYLDMFTFFASSALGMN--HPALADDPEFRAELGRAALNKPSNSDV-YTVEMARFVDTFARVLGD-P----ELPHLFF  115 (443)
T ss_pred             CCEeeecccCHhhhcCCCC--ChHHhhHHHHHHHHHHhhhhccccCCc-CCHHHHHHHHHHHhhcCC-C----CCCEEEE
Confidence            4567888777543333443  677888  777766431     10112 222333444445444210 0    1368999


Q ss_pred             eecccchhHHHHHHHHHHHhC------C------CCEEEEcCCCCcchHHHhhh-CCCCe-----------eeeeeec--
Q 012647          155 VQGLSGTGSLRLAAALIERYF------P------GAKVLISSPTWGNHKNIFND-ARVPW-----------SEYRYYD--  208 (459)
Q Consensus       155 ~~t~ggt~a~~l~~~~~~~~~------~------gd~Vlv~~p~y~~~~~~~~~-~G~~v-----------~~v~~~~--  208 (459)
                        +++|++|++.+.++...+.      .      ..+|+...-+|.+....... .|...           ..+|...  
T Consensus       116 --~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (443)
T PRK08297        116 --VDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLR  193 (443)
T ss_pred             --eCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCC
Confidence              9999999999988876541      1      25799999888765432222 12100           0011000  


Q ss_pred             ----CCC-C---C---CCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012647          209 ----PKT-V---G---LDFEGMIADIKAAPGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFAS  276 (459)
Q Consensus       209 ----~~~-~---~---~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~  276 (459)
                          ..+ .   .   -+++.+++.+...++....+|+...+...|.+ ++++.+++|.++|++||+++|.||++.+++.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGR  273 (443)
T PRK08297        194 FPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGL  273 (443)
T ss_pred             CCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCc
Confidence                000 0   0   02455566676544566666665555555654 7888899999999999999999999988864


Q ss_pred             CCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHH-HHHH--hhccccccCCchHHHHHHH
Q 012647          277 GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVK-SQLK--RLARPMYSNPPVHGARIVA  353 (459)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~  353 (459)
                      .+   ..+.... .+..++++   .|+|.++     +|.+++   .++.. .+. ..+.  .....++ +.+.++..++.
T Consensus       274 tG---~~~a~~~-~gv~PDiv---~~gK~l~-----~~a~l~---~~~i~-~~~~~~~~~~~~~~~T~-~gnpl~~aaa~  336 (443)
T PRK08297        274 TG---TAWAYQQ-LGVRPDIV---AFGKKTQ-----VCGIMA---GRRVD-EVEDNVFAVSSRINSTW-GGNLVDMVRAR  336 (443)
T ss_pred             cc---hHHHHHh-cCCCCCEE---Eeccccc-----ccceec---chHHH-HhhhhhccCccccCCCC-CccHHHHHHHH
Confidence            32   2222222 23334545   4799874     344422   22311 121 1111  1122223 33444444443


Q ss_pred             HHh---CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCCCcccccCCcceeeecCC-C----HHHHHHHHhc
Q 012647          354 NVV---GNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK--SGKDWSFILRQIGMFSFTGL-N----KAQSDNMTNK  423 (459)
Q Consensus       354 ~~L---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g--~~~~~~~~~~~~g~f~~~~l-~----~~~~~~ll~~  423 (459)
                      ..|   ++.           ...++.+++-+++.+.|+ ++.  .|.-...+...|. ++.+.+ +    ..+.+.+++ 
T Consensus       337 a~L~~l~~~-----------~l~~~~~~~g~~l~~~L~-~l~~~~~~~~~~vrg~G~-~~~i~~~~~~~~~~~~~~l~~-  402 (443)
T PRK08297        337 RILEVIEED-----------GLVENAARQGEYLLARLE-ELAAEFPAVVSNVRGRGL-MCAFDLPTTADRDEVIRRLWE-  402 (443)
T ss_pred             HHHHHHHhc-----------CHHHHHHHHHHHHHHHHH-HHHHHCCCcceeeeccce-EEEEEecCHHHHHHHHHHHHH-
Confidence            333   222           233344444445545444 321  1110112333433 333322 2    234556665 


Q ss_pred             ccEEEcCCC----cEE--EccCChhhHHHHHHHHHHHHhhcC
Q 012647          424 WHVYMTKDG----RIS--LAGLSLAKCEYLADAIIDSYHNVS  459 (459)
Q Consensus       424 ~gI~v~~gg----Ris--~~~~~~e~i~~~~~~l~~~~~~~~  459 (459)
                      +||.+.|+|    ||+  +.. +++++++++++|.++++++.
T Consensus       403 ~Gvl~~~~~~~~lr~~P~l~~-t~~eid~~l~~l~~~l~~~~  443 (443)
T PRK08297        403 EGVLVLPCGERSIRFRPALTV-TTEEIDAAIDALRRALPEVA  443 (443)
T ss_pred             CCEEEecCCCCeEEEECCccC-CHHHHHHHHHHHHHHHHhhC
Confidence            699998866    664  333 89999999999999998763

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.55  E-value=9.6e-12  Score=125.79  Aligned_cols=337  Identities=15%  Similarity=0.076  Sum_probs=181.1

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCC--CCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK--EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~--~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...||+..|..-..-++.  +|.|.+++++.++.....  .+.+.....+|.+.+++......   .....+++  +++
T Consensus        57 G~~ylD~~~g~~~~~lGH~--~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~---~~~~~~f~--~~S  129 (459)
T PRK06931         57 GNQYLDCLAGAGTLALGHN--HPDVLQSIQDVLTSGLPLHTLDLTTPLKDAFSEYLLSLLPGQG---KEYCLQFT--GPS  129 (459)
T ss_pred             CCEEEEcccchhhccCCCC--CHHHHHHHHHHHhhhccccccccCCHHHHHHHHHHHHhCCCcc---ccceEEEe--CCC
Confidence            4578899888642333443  788999998887642211  11122222344444444321100   00012344  689


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhC-C------------CCeeeeeeecCCCCCC------CHHHH-
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA-R------------VPWSEYRYYDPKTVGL------DFEGM-  219 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-G------------~~v~~v~~~~~~~~~~------d~e~l-  219 (459)
                      |++|++.+.++...+...++|+...-+|.+........ |            ..+..+|..+.....+      +.+.+ 
T Consensus       130 GsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (459)
T PRK06931        130 GADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALT  209 (459)
T ss_pred             cHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHH
Confidence            99999999988877766678999999887764433321 1            1123333311100000      22332 


Q ss_pred             ---HHHHHc---CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc
Q 012647          220 ---IADIKA---APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR  292 (459)
Q Consensus       220 ---~~~i~~---~~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~  292 (459)
                         ++.+..   .++....+|+-..+.-.|.+ .+++-+++|.++|++||+++|.||+..+++-.+   ..+.... .+-
T Consensus       210 ~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG---~~~a~~~-~gv  285 (459)
T PRK06931        210 YYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTG---KMFAFEH-AGI  285 (459)
T ss_pred             HHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCc---hHHHhhh-cCC
Confidence               233321   12335555555555555654 578889999999999999999999988886321   2233222 233


Q ss_pred             CCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHh---CChhhHHHHHHHH
Q 012647          293 GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVV---GNPALFDEWKAEM  369 (459)
Q Consensus       293 ~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L---~~~~~~~~~~~~~  369 (459)
                      .++++   +++|.++ .|+.+|.+.+   .++ ++.+.   .....+++ +.+.++..++...|   ++.          
T Consensus       286 ~PDiv---t~gK~l~-gG~Pi~av~~---~~~-~~~~~---~~~~~~T~-~gnpla~aaala~L~~l~~~----------  343 (459)
T PRK06931        286 EPDII---VMSKAVG-GGLPLAVLGI---KKE-FDAWQ---PGGHTGTF-RGNQLAMATGLTTLKILKEE----------  343 (459)
T ss_pred             CCCEE---Eeccccc-CCcceeeeee---HHH-Hhhcc---CCCCCCCC-CCCHHHHHHHHHHHHHHHhC----------
Confidence            45555   5799998 7899998644   444 22221   11222333 33444444443333   222          


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc----cCCCCCcccccCCcceeee--cCC------------CH----HHHHHHHhcccEE
Q 012647          370 EMMAGRIKNVRQKLFDSLSAK----DKSGKDWSFILRQIGMFSF--TGL------------NK----AQSDNMTNKWHVY  427 (459)
Q Consensus       370 ~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~g~f~~--~~l------------~~----~~~~~ll~~~gI~  427 (459)
                       ...++.++.-++|.+.|+ +    ++.   +..+.-.|.++.+  ..-            +.    .+...+++ +||.
T Consensus       344 -~l~~~~~~~G~~l~~~L~-~l~~~~~~---i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl  417 (459)
T PRK06931        344 -NLAQNAAERGEWLKAQLA-ELQKRYPC---IGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFE-NGLL  417 (459)
T ss_pred             -CHHHHHHHHHHHHHHHHH-HHHHhCCC---eEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHH-CCcE
Confidence             223444444445555554 3    321   1222233333211  110            11    22344555 6999


Q ss_pred             EcCCC------cEEEcc-CChhhHHHHHHHHHHHHhh
Q 012647          428 MTKDG------RISLAG-LSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       428 v~~gg------Ris~~~-~~~e~i~~~~~~l~~~~~~  457 (459)
                      +.+.|      |+..+- .++++++++++++.+++++
T Consensus       418 ~~~~~~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~  454 (459)
T PRK06931        418 LERGGRNGNVVRLLPPLLITQAECEEFIDRFEQALLA  454 (459)
T ss_pred             EeecCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHH
Confidence            97653      554332 2999999999999998875

>PRK15029 arginine decarboxylase; Provisional

Probab=99.54  E-value=1.5e-12  Score=136.25  Aligned_cols=195  Identities=14%  Similarity=0.041  Sum_probs=128.8

Q ss_pred             CCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCe
Q 012647          122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPW  201 (459)
Q Consensus       122 Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v  201 (459)
                      +.|..-..+..+..|+.++.+       .-.++  ++|+|.++..+  +.+.+.+||+|+++..++-+....+...|+++
T Consensus       201 ~~p~G~I~eAq~~aA~~fgA~-------~t~Fl--vNGST~gn~a~--i~a~~~~gd~Vlv~RN~HKSv~~al~L~ga~P  269 (755)
T PRK15029        201 LDHTGAFGESEKYAARVFGAD-------RSWSV--VVGTSGSNRTI--MQACMTDNDVVVVDRNCHKSIEQGLILTGAKP  269 (755)
T ss_pred             CCCCcHHHHHHHHHHHHhCCC-------cEEEE--eCChhHHHHHH--HHHhcCCCCEEEeecccHHHHHHHHHHcCCeE
Confidence            434444566666677765442       44556  89999999987  66678899999999999999888999999999


Q ss_pred             eeeeeecCC---CCCCC-----HHHHHHHHHcCCCCc-------EEEEeCCCCCCC--CCCCCHHHHHHHHHHHHhcCCe
Q 012647          202 SEYRYYDPK---TVGLD-----FEGMIADIKAAPGGS-------FILLHGCAHNPT--GIDPTPEQWEKIADVIQEKNHI  264 (459)
Q Consensus       202 ~~v~~~~~~---~~~~d-----~e~l~~~i~~~~~~~-------~~ii~~~p~NPT--G~~~s~~~l~~i~~l~~~~~~~  264 (459)
                      ++++-.-.+   ..+++     ++.++++++..+...       ++++++   |||  |++   .++++|+++|+++++.
T Consensus       270 vyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt---~PTY~Gv~---~di~~I~~~~h~~~~~  343 (755)
T PRK15029        270 VYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVT---NCTYDGVC---YNAKEAQDLLEKTSDR  343 (755)
T ss_pred             EEecccccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEE---CCCCccee---eCHHHHHHHHHhcCCe
Confidence            998643211   12344     899999997754322       255553   555  999   6778899999999999


Q ss_pred             eEEeccCCCCC-CCCCCCChhHHHH-HHh-cCCeEEEEEcCCcCcccCCCCcceEEEEeCCh--hHHHHHHHHHHh
Q 012647          265 PFFDVAYQGFA-SGSLDNDASSVRL-FAT-RGMELLVAQSYSKNLGLYAERIGAMNVVCSSS--DLAARVKSQLKR  335 (459)
Q Consensus       265 ii~Deay~~~~-~~~~~~~~~~~~~-~~~-~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~--~~~~~~~~~~~~  335 (459)
                      +++||||.... +.+.-+...++.. ... .+..++++.|.+|.+  +++.-|.++=+.+++  -..+++...+..
T Consensus       344 llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL--~alTQaS~LHv~~~~~~id~~r~~~~l~~  417 (755)
T PRK15029        344 LHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYIHVREGRGAINFSRFNQAYMM  417 (755)
T ss_pred             EEEECccccccccCccccccccccccccccCCCceEEEEchhhcc--cchhhhhhheeCCCccccCHHHHHHHHHH
Confidence            99999986643 3221000011100 001 234569999999997  466666654333331  123456655554

>PRK06148 hypothetical protein; Provisional

Probab=99.53  E-value=6.8e-12  Score=137.94  Aligned_cols=335  Identities=12%  Similarity=0.055  Sum_probs=187.1

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC-CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      +...+|+..|..  .-|+.  +|.|.+++.+.++.. ....| ......+|-+.+++.+...      -+.+.+  +++|
T Consensus       623 G~~ylD~~~g~~--~lGH~--hp~v~~Ai~~q~~~l~~~~~~-~~~~~~~lAe~L~~~~p~~------~~~v~f--~nSG  689 (1013)
T PRK06148        623 GRAYLDCFNNVC--HVGHA--HPRVVAAAARQAARLNTNTRY-LHDAIVAYAERLTATLPDG------LTVAFF--VNSG  689 (1013)
T ss_pred             CCEEEEcccChh--hcCCC--CHHHHHHHHHHHhhcCCcCCc-CCHHHHHHHHHHHHhCCCC------cCEEEE--eCCc
Confidence            356778877742  23443  788999998887642 11223 2333344555555543211      256888  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhh-C--------C----CCeeeeeeecC--CCCCC-C-------HH
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-A--------R----VPWSEYRYYDP--KTVGL-D-------FE  217 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~--------G----~~v~~v~~~~~--~~~~~-d-------~e  217 (459)
                      ++|++.+.++.+......+|+...-+|.+....... .        +    ..+..++..+.  ..+.. |       .+
T Consensus       690 sEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  769 (1013)
T PRK06148        690 SEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAE  769 (1013)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHH
Confidence            999999999887776667899999888765321111 1        1    01111111000  00110 1       13


Q ss_pred             HHHHHHH---cCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC
Q 012647          218 GMIADIK---AAPGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (459)
Q Consensus       218 ~l~~~i~---~~~~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~  293 (459)
                      .+++.+.   ..++....+|+-...--.|. .++++-+++|.++|++||+++|.||+..+++-.+  ...+....+ +-.
T Consensus       770 ~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG--~~~~a~e~~-gv~  846 (1013)
T PRK06148        770 SVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVG--SHWWAFETQ-GVV  846 (1013)
T ss_pred             HHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCC--Ccchhhhhc-CCC
Confidence            4555453   22234556665554444454 5678889999999999999999999988886321  112232222 233


Q ss_pred             CeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHH---hCChhhHHHHHHHHH
Q 012647          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV---VGNPALFDEWKAEME  370 (459)
Q Consensus       294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---L~~~~~~~~~~~~~~  370 (459)
                      ++++   +++|.+| .|+.+|.+++   .++..+.+...  ....+++ +.+.++..++...   ++++           
T Consensus       847 PDiv---t~gK~lg-gG~Plgav~~---~~ei~~~~~~g--~~~~~Tf-~gnpla~aaa~a~L~~i~~e-----------  905 (1013)
T PRK06148        847 PDIV---TMGKPIG-NGHPMGAVVT---TREIADSFDNG--MEYFNTF-GGNPVSCAIGLAVLDIIEDE-----------  905 (1013)
T ss_pred             ccee---eeccccc-CCcceEEEEE---cHHHHhhccCC--CccccCC-CCCHHHHHHHHHHHHHHhhc-----------
Confidence            4554   6799999 7999999866   77744433211  0112233 3344444444333   3332           


Q ss_pred             HHHHHHHHHHHHHHHHHhhcc----CCCCCcccccCCcceeee--cC-C-----C----HHHHHHHHhcccEEEcCCC--
Q 012647          371 MMAGRIKNVRQKLFDSLSAKD----KSGKDWSFILRQIGMFSF--TG-L-----N----KAQSDNMTNKWHVYMTKDG--  432 (459)
Q Consensus       371 ~~~~~~~~~~~~l~~~L~~~~----g~~~~~~~~~~~~g~f~~--~~-l-----~----~~~~~~ll~~~gI~v~~gg--  432 (459)
                      ...++.+++-++|.+.|+ ++    +.   +..+.-.|-++.+  .. -     +    ..+.+.+++ +||.+.+.|  
T Consensus       906 ~l~~~~~~~G~~l~~~L~-~l~~~~~~---i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~~g~~  980 (1013)
T PRK06148        906 DLQRNALEIGNYLLAGLR-ELQDRFDI---IGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARE-RGILIGTEGPH  980 (1013)
T ss_pred             cHHHHHHHHHHHHHHHHH-HHHHhCCC---ceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHHh-CCeEEeccCCC
Confidence            233445555555555555 43    21   1112223322211  11 0     1    123445555 699998754  


Q ss_pred             ----cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          433 ----RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       433 ----Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                          ||...- .+++++++++++|.++++++
T Consensus       981 ~~vlr~~Ppl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148        981 DNVLKIRPPLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred             CCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence                554332 28999999999999999764

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.52  E-value=5.1e-12  Score=117.72  Aligned_cols=162  Identities=19%  Similarity=0.119  Sum_probs=128.0

Q ss_pred             CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchH----HHhhhCCCC
Q 012647          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK----NIFNDARVP  200 (459)
Q Consensus       125 ~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~----~~~~~~G~~  200 (459)
                      ..-...|.+.|+.+=.+          +..+.+.+|+.|+..+  ++....+||.|+..+--|.+-.    ..++..|.+
T Consensus        61 NPT~~vlE~RiAaLEGG----------~aa~a~aSG~AA~~~a--i~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~  128 (426)
T COG2873          61 NPTTDVLEERIAALEGG----------VAALAVASGQAAITYA--ILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIE  128 (426)
T ss_pred             CchHHHHHHHHHHhhcc----------hhhhhhccchHHHHHH--HHHhccCCCeeEeeccccCchHHHHHHHHHhcCcE
Confidence            34567888999988333          2223378999999998  7777889999999997776544    445688999


Q ss_pred             eeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCC
Q 012647          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (459)
Q Consensus       201 v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~  280 (459)
                      +..++-       .|+|.++++|++   +|+++++.+-.||-+.+   -+++.|+++|+++|+++|+|..+..-.     
T Consensus       129 v~fvd~-------~d~~~~~~aI~~---nTkavf~EtigNP~~~v---~Die~ia~iAh~~gvpliVDNT~atpy-----  190 (426)
T COG2873         129 VRFVDP-------DDPENFEAAIDE---NTKAVFAETIGNPGLDV---LDIEAIAEIAHRHGVPLIVDNTFATPY-----  190 (426)
T ss_pred             EEEeCC-------CCHHHHHHHhCc---ccceEEEEeccCCCccc---cCHHHHHHHHHHcCCcEEEecCCCcce-----
Confidence            998854       368999999997   89999999999999999   778899999999999999999965532     


Q ss_pred             CChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCC
Q 012647          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (459)
Q Consensus       281 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (459)
                          -++.+  +..-.|++.|.+|.+|-.|--+|.+++-+++
T Consensus       191 ----l~rP~--~hGADIVvHS~TK~igGhGt~iGG~iVD~G~  226 (426)
T COG2873         191 ----LCRPI--EHGADIVVHSATKYIGGHGTAIGGVIVDGGK  226 (426)
T ss_pred             ----ecchh--hcCCCEEEEeecccccCCccccceEEEeCCc
Confidence                12221  2345788999999999999999999875544

>PRK06149 hypothetical protein; Provisional

Probab=99.52  E-value=6.8e-12  Score=137.88  Aligned_cols=337  Identities=12%  Similarity=0.059  Sum_probs=186.3

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCC-CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      +...+|+..|..  .-+.  -+|.|.+++.+.+..... ..| ......+|.+.+++.+...      -+.+.+  +++|
T Consensus       584 G~~ylD~~~~~~--~lGh--~hp~v~~Ai~~q~~~l~~~~~~-~~~~~~elae~L~~~~p~~------~~~v~f--~~SG  650 (972)
T PRK06149        584 GRSYLDMVNNVT--VLGH--GHPRLAAAAARQWSLLNTNSRF-HYAAVAEFSERLAALAPDG------LDTVFL--VNSG  650 (972)
T ss_pred             CCEEEECCCCcc--ccCC--CCHHHHHHHHHHHHhccccccc-cCHHHHHHHHHHHHhCCCC------cCEEEE--eCCc
Confidence            457888887643  2233  378899998887754321 112 2223345555555554211      257888  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhh--------CCC------CeeeeeeecCC--CCC-CC-----HHH
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND--------ARV------PWSEYRYYDPK--TVG-LD-----FEG  218 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~--------~G~------~v~~v~~~~~~--~~~-~d-----~e~  218 (459)
                      ++|++.+.++...+....+|+..+-+|.+.......        .+.      .+..++..+..  .+. .|     .+.
T Consensus       651 sEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~  730 (972)
T PRK06149        651 SEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRD  730 (972)
T ss_pred             hHHHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHH
Confidence            999999988877776557888888888754321110        000      11222221000  011 11     234


Q ss_pred             HHHHHH---cCCCCcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC
Q 012647          219 MIADIK---AAPGGSFILLHGCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM  294 (459)
Q Consensus       219 l~~~i~---~~~~~~~~ii~~~p~NPTG-~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~  294 (459)
                      +++.++   ..+++...+|+-......| ..++++-+++|.++|++||+++|.||+..+++-.+  ...+....+ +-.+
T Consensus       731 ~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG--~~~~a~e~~-gv~P  807 (972)
T PRK06149        731 VVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLG--HYFWGFEQQ-GVVP  807 (972)
T ss_pred             HHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccC--ccchhhhhc-CCCC
Confidence            444333   2233455555544444445 55778889999999999999999999977776432  112233222 2234


Q ss_pred             eEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHh---CChhhHHHHHHHHHH
Q 012647          295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVV---GNPALFDEWKAEMEM  371 (459)
Q Consensus       295 ~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L---~~~~~~~~~~~~~~~  371 (459)
                      +++   +++|.+| .|+.+|++++   +++..+.+...  .....++ +.+.++..++...|   ++.           .
T Consensus       808 Div---t~gK~lg-~G~Pl~av~~---~~~i~~~~~~~--~~~~sT~-~gnP~~~aaala~L~~i~~e-----------~  866 (972)
T PRK06149        808 DII---TMAKGMG-NGHPLGAVIT---RREIAEALEAE--GYFFSST-GGSPVSCRIGMAVLDVLREE-----------K  866 (972)
T ss_pred             CEE---Eeccccc-CCeeeEEEEE---cHHHHhhhccC--CcccCCC-CCCHHHHHHHHHHHHHHHhc-----------C
Confidence            544   7899999 7899999866   77744433221  1111223 33334434443333   222           3


Q ss_pred             HHHHHHHHHHHHHHHHhhccC--CCCCcccccCCcceeee--cCC------C----HHHHHHHHhcccEEEcCCC-----
Q 012647          372 MAGRIKNVRQKLFDSLSAKDK--SGKDWSFILRQIGMFSF--TGL------N----KAQSDNMTNKWHVYMTKDG-----  432 (459)
Q Consensus       372 ~~~~~~~~~~~l~~~L~~~~g--~~~~~~~~~~~~g~f~~--~~l------~----~~~~~~ll~~~gI~v~~gg-----  432 (459)
                      ..++.++.-++|.+.|+ ++.  .| .+..+.-.|-++.+  +..      +    ..+..++++ +||.+.+.|     
T Consensus       867 l~~~~~~~G~~l~~~L~-~l~~~~~-~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~-~Gvl~~~~g~~~~v  943 (972)
T PRK06149        867 LQENARRVGDHLKARLE-ALADRHP-LIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLE-LGVIMQPTGDHLNI  943 (972)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHhCC-CeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHHh-CCeEEeecCCCCCE
Confidence            34455555555666555 431  10 01122223322211  110      1    123456666 599998866     


Q ss_pred             -cEEEc-cCChhhHHHHHHHHHHHHhhc
Q 012647          433 -RISLA-GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       433 -Ris~~-~~~~e~i~~~~~~l~~~~~~~  458 (459)
                       ||.-. ..+++++++++++|.+++++.
T Consensus       944 l~~~Ppl~it~~~id~~~~~l~~~l~~~  971 (972)
T PRK06149        944 LKIKPPLCLDRESADFFVDMLDRVLTEG  971 (972)
T ss_pred             EEEECCCcCCHHHHHHHHHHHHHHHHhh
Confidence             33322 238999999999999998763

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.52  E-value=1.3e-11  Score=125.83  Aligned_cols=262  Identities=11%  Similarity=0.095  Sum_probs=159.9

Q ss_pred             CCCCCCcccHHHHHHHHHHHhcCCC-Cc--------ccc--CceEEeecccchhHHHHHHHHHHHhC-------------
Q 012647          120 KEYLPIEGLAAFNKVTAELLFGADN-SV--------LKE--QRVATVQGLSGTGSLRLAAALIERYF-------------  175 (459)
Q Consensus       120 ~~Y~~~~g~~~lr~aia~~l~~~~~-~~--------~~~--~~i~~~~t~ggt~a~~l~~~~~~~~~-------------  175 (459)
                      ..|.......++.+.+.+|+....+ .+        -.+  ..-++  |+|||+|+..+....+...             
T Consensus       119 ~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~--tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~  196 (522)
T TIGR03799       119 VKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAF--CSGGTVANITALWVARNRLLKADGDFKGVARE  196 (522)
T ss_pred             ceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEE--cCchHHHHHHHHHHHHHHhccccccccccccc
Confidence            4444555566777777777654421 10        011  12345  8999999998754433221             


Q ss_pred             -----------CCCEEEEcCCCCcchHHHhhhCCC---CeeeeeeecCCCCCCCHHHHHHHHHc---CCCCcEEEEeCCC
Q 012647          176 -----------PGAKVLISSPTWGNHKNIFNDARV---PWSEYRYYDPKTVGLDFEGMIADIKA---APGGSFILLHGCA  238 (459)
Q Consensus       176 -----------~gd~Vlv~~p~y~~~~~~~~~~G~---~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~ii~~~p  238 (459)
                                 ++..|++++-.+......++..|.   +++.+|+  ++++.+|++.|++.|++   ...+...++.+..
T Consensus       197 gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~--d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataG  274 (522)
T TIGR03799       197 GLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKT--DANNRIDVDALRDKCAELAEQNIKPLAIVGVAG  274 (522)
T ss_pred             cchhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEe--CCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEec
Confidence                       134688888888888888888887   7899999  45689999999999863   1223344444566


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEEcCCc-CcccCCCCcceE
Q 012647          239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSK-NLGLYAERIGAM  316 (459)
Q Consensus       239 ~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK-~~~~~G~RiG~~  316 (459)
                      ++.||.+   +++++|+++|+++|+++++|.+|.+...-     ....+..+.. ..-+.++.|.+| .+++.|  +|.+
T Consensus       275 tt~tGai---Dpl~eIa~i~~~~g~~lHVDaA~gg~~~~-----~~~~r~~l~gle~aDSit~d~HK~l~~P~g--~G~l  344 (522)
T TIGR03799       275 TTETGNI---DPLDEMADIAQELGCHFHVDAAWGGATLL-----SNTYRHLLKGIERADSVTIDAHKQLYVPMG--AGMV  344 (522)
T ss_pred             CcCCCCc---CCHHHHHHHHHHcCCeEEEEchhhhHHHh-----CHHHHHHhcCchhCCEEEEChhhcCCcCcc--cEEE
Confidence            7899999   99999999999999999999998754321     0112222232 245678889999 456555  7888


Q ss_pred             EEEeCChhHHHHHHH---HHHhh-c-----cccccCCchHH--HHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          317 NVVCSSSDLAARVKS---QLKRL-A-----RPMYSNPPVHG--ARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD  385 (459)
Q Consensus       317 ~~v~~~~~~~~~~~~---~~~~~-~-----~~~~~~~~~~~--~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  385 (459)
                      +  .++++..+.+..   .+... .     .....+-+..+  ..++...+.        .+.++++.++..++++++.+
T Consensus       345 l--vr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG--------~~G~~~ii~~~~~la~~l~~  414 (522)
T TIGR03799       345 L--FKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIG--------RKGYELLIDQSIEKAKYFAD  414 (522)
T ss_pred             E--EeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHH
Confidence            4  445553332221   11000 0     00011122222  112222222        34568888999999999999


Q ss_pred             HHhhccCCCCCcccccC-Ccceeee
Q 012647          386 SLSAKDKSGKDWSFILR-QIGMFSF  409 (459)
Q Consensus       386 ~L~~~~g~~~~~~~~~~-~~g~f~~  409 (459)
                      .|+ +.+   +++++.+ +-+..+|
T Consensus       415 ~L~-~~~---~~el~~~p~l~iv~F  435 (522)
T TIGR03799       415 LIQ-QQP---DFELVTEPELCLLTY  435 (522)
T ss_pred             HHh-hCC---CeEEecCCCccEEEE
Confidence            998 653   2565443 3444443

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.49  E-value=2.6e-11  Score=114.36  Aligned_cols=343  Identities=12%  Similarity=0.056  Sum_probs=201.6

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...||+..+......++.  .|++.+++.+.+.+-  ....|...+ .-++.+.+.+.+..-     ..+.|.+  .++
T Consensus        55 g~EyiD~~ssw~~~~~Gha--npev~ral~~q~~k~~hs~~~~~t~e-av~l~~~l~~~~~~~-----~~~rvff--~ns  124 (433)
T KOG1401|consen   55 GKEYIDFTSSWAVTILGHA--NPEVARALAEQAKKLGHSSNGYFTLE-AVELEEVLSAVLGKG-----SAERVFF--CNS  124 (433)
T ss_pred             cceeeeeccceeccccCCC--CHHHHHHHHHHHhhheeccCccccHH-HHHHHHHHHhcccCC-----CccEEEE--ecC
Confidence            3468888888753433443  789999988766542  112332322 233444444443211     3789999  999


Q ss_pred             chhHHHHHHHHHHHhCCC----C--EEEEcCCCCcchH-HHhhhCCCCeeeeeeec---C--CCCCCCHHHHHHHHHcCC
Q 012647          160 GTGSLRLAAALIERYFPG----A--KVLISSPTWGNHK-NIFNDARVPWSEYRYYD---P--KTVGLDFEGMIADIKAAP  227 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~g----d--~Vlv~~p~y~~~~-~~~~~~G~~v~~v~~~~---~--~~~~~d~e~l~~~i~~~~  227 (459)
                      ||+|++.+.++...+.--    +  ++|....+|.+.. ..+..++..-...|.++   +  ...--|..++++.++.+.
T Consensus       125 GTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~  204 (433)
T KOG1401|consen  125 GTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHK  204 (433)
T ss_pred             CcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCC
Confidence            999999998887665421    2  4888888886542 22232232222222210   0  001227899999998865


Q ss_pred             CCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc
Q 012647          228 GGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (459)
Q Consensus       228 ~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  306 (459)
                      .....+|+-..+-.-|.. ..++-+..|.+.|+++|+++|.||+..+|+--+   ..|.-. ++...+++.   ++.|.+
T Consensus       205 ~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g---~~~a~e-~~~~~PDI~---t~aK~L  277 (433)
T KOG1401|consen  205 GEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLG---YGWAQE-YFGVTPDIT---TVAKPL  277 (433)
T ss_pred             CceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccc---hHHHHH-HhCcCCcce---eehhhc
Confidence            455667766666666654 677889999999999999999999988876332   233332 233344544   789999


Q ss_pred             ccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHH---HhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012647          307 GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVAN---VVGNPALFDEWKAEMEMMAGRIKNVRQKL  383 (459)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~L~~~~~~~~~~~~~~~~~~~~~~~~~~l  383 (459)
                      + .|+.+|...+   ++...+.+.......+..++ +.+.++..++..   .|.++++       ++++.+.-+..++.+
T Consensus       278 ~-gGlPigA~~v---~~kV~~~i~~~~~l~hg~Tf-~gnpLacsa~~~~l~~l~~~e~-------~k~vs~~~k~L~~~l  345 (433)
T KOG1401|consen  278 G-GGLPIGATGV---RDKVAEMISPGDHLYHGGTF-SGNPLACSAGIKVLDELKDPET-------LKNVSKIGKELRKLL  345 (433)
T ss_pred             c-CCceeEEEee---hHHHHhhcCCCCccccCccc-CCChhhhhHHHHHHHHHcCHHH-------HHHHHHHHHHHHHHH
Confidence            9 8999999977   66644443322222223333 444444444433   3445533       456666666667777


Q ss_pred             HHHHhhccCCCCCcccccCCcceeee---c-CC----CH-----HH----HHHHHhcccEEEcCCCcEEEccCChhhHHH
Q 012647          384 FDSLSAKDKSGKDWSFILRQIGMFSF---T-GL----NK-----AQ----SDNMTNKWHVYMTKDGRISLAGLSLAKCEY  446 (459)
Q Consensus       384 ~~~L~~~~g~~~~~~~~~~~~g~f~~---~-~l----~~-----~~----~~~ll~~~gI~v~~ggRis~~~~~~e~i~~  446 (459)
                      .+.+. +.+.  .+.-. -..++++.   . .+    +.     .+    ...+++ .||.+.|-+=+++.+ ++|.++.
T Consensus       346 ~e~~~-~~~~--~i~g~-~grgl~ig~~~~~p~~~~~d~~~~~~ll~~~~~~~~~~-~gv~i~P~~~l~~~~-~~E~i~~  419 (433)
T KOG1401|consen  346 DEYLK-KTPN--SICGG-VGRGLVIGFEFEGPVYKFADAAREQGLLILTLGKGLLE-EGVRIAPIYLLTVEH-TPEVIQR  419 (433)
T ss_pred             HHHhc-cCCC--ceeee-eeeEEEEEEEEeechhhhhhhhhhhhHHHHHHhccccc-ceEEEeccccccccC-cHHHHHH
Confidence            77766 5421  11111 11222221   1 11    11     11    112333 377887744445544 5889999


Q ss_pred             HHHHHHHHHhhcC
Q 012647          447 LADAIIDSYHNVS  459 (459)
Q Consensus       447 ~~~~l~~~~~~~~  459 (459)
                      +++.+.+.+.+++
T Consensus       420 ~l~i~~~~l~~~~  432 (433)
T KOG1401|consen  420 LLTILEKVLSALN  432 (433)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988764

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.48  E-value=5.9e-12  Score=122.63  Aligned_cols=321  Identities=19%  Similarity=0.230  Sum_probs=171.8

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC------CCccc---HHHHHHHHHHHhcCCCCccccCc-eE
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL------PIEGL---AAFNKVTAELLFGADNSVLKEQR-VA  153 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~------~~~g~---~~lr~aia~~l~~~~~~~~~~~~-i~  153 (459)
                      ..|+|-..++       .++|.+++++...+......+|+      -..-+   +.+....+..+++..     ++. -+
T Consensus        21 ~~l~LiaSEN-------~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~-----~~~w~a   88 (399)
T PF00464_consen   21 STLNLIASEN-------YMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAE-----PKEWYA   88 (399)
T ss_dssp             HSEE-CTT------------HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-S-----TTTEEE
T ss_pred             cCccccCccc-------ccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCC-----cccceE
Confidence            5688887664       23788888887776443323221      12222   333333333333321     232 33


Q ss_pred             EeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---Hhhh-------CCCCeeeeeeecCCCCCCCHHHHHHHH
Q 012647          154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IFND-------ARVPWSEYRYYDPKTVGLDFEGMIADI  223 (459)
Q Consensus       154 ~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~-------~G~~v~~v~~~~~~~~~~d~e~l~~~i  223 (459)
                      -+|..+|+.|+..+  +.+.+.|||+|+..++...+|..   ....       ...+.+.++++ ++++.+|.|++++.+
T Consensus        89 nvqp~SGs~An~av--~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d-~~~~~ID~d~l~~~a  165 (399)
T PF00464_consen   89 NVQPHSGSQANLAV--YMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVD-PDTGLIDYDELEKLA  165 (399)
T ss_dssp             E---SSHHHHHHHH--HHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB--TTTSSB-HHHHHHHH
T ss_pred             EeecCCchHHHHHH--HHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeee-cCCCeECHHHHHHHH
Confidence            36778999999888  66668899999999987765532   1111       23567788885 467899999999998


Q ss_pred             HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEEcC
Q 012647          224 KAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSY  302 (459)
Q Consensus       224 ~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~  302 (459)
                      ++.  ++++|++..-++|     -+-+++++.++|.+.|.++++|.++. ++..++.-.+  +    +.  ..+++.+|.
T Consensus       166 ~~~--kPklIi~G~S~y~-----~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~--P----~~--~ADvvt~sT  230 (399)
T PF00464_consen  166 KEH--KPKLIICGASSYP-----RPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPN--P----FP--YADVVTGST  230 (399)
T ss_dssp             HHH----SEEEEE-SSTS-----S---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS----G----CC--TSSEEEEES
T ss_pred             hhc--CCCEEEECchhcc-----CccCHHHHHHHHHhcCcEEEecccccccceehheecC--c----cc--cceEEEeec
Confidence            874  4556765443333     23678899999999999999999963 2322221111  1    11  246888999


Q ss_pred             CcCcccCCCCcceEEEEeC-------------ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012647          303 SKNLGLYAERIGAMNVVCS-------------SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEM  369 (459)
Q Consensus       303 SK~~~~~G~RiG~~~~v~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~  369 (459)
                      +|+|  +|-|-|.+.  +.             ++++.+++.+..-...++.. ....+++.+++  |.+ ..    ..+.
T Consensus       231 hKtl--~GPrggiI~--~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~-h~~~iaalAva--l~e-a~----~~~f  298 (399)
T PF00464_consen  231 HKTL--RGPRGGIIL--TNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGP-HMHRIAALAVA--LKE-AL----SPEF  298 (399)
T ss_dssp             SGGG---SSS-EEEE--ES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS---HHHHHHHHHH--HHH-HT----SHHH
T ss_pred             cccc--cccCceEEE--EcCCccccCCcccccHHHHHHHhccccCCCcccCc-chhHHHHHHHH--Hhc-cc----CHHH
Confidence            9997  577778773  44             36655555444322111100 12222322221  111 00    1223


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCc-ceeeec-----CCCHHHHHHHHhcccEEEc----CC--------
Q 012647          370 EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQI-GMFSFT-----GLNKAQSDNMTNKWHVYMT----KD--------  431 (459)
Q Consensus       370 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~-g~f~~~-----~l~~~~~~~ll~~~gI~v~----~g--------  431 (459)
                      +++.++..++.+.|.+.|. +.|    ++++.... .-.+|+     +++...+++.|++.||.+.    |+        
T Consensus       299 k~Ya~qVv~NAk~La~~L~-~~G----~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~s  373 (399)
T PF00464_consen  299 KEYAKQVVKNAKALAEALQ-ERG----FKVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIPGDRSPFVPS  373 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HTT-----EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTTSTTTT-S
T ss_pred             HHHHHHHHHHHHHHHHHHh-hCC----cEEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeecccccCCCCCCCCCC
Confidence            5777788888899999999 887    46553211 123444     3467788899999999874    22        


Q ss_pred             C-cEEEc-----cCChhhHHHHHHHH
Q 012647          432 G-RISLA-----GLSLAKCEYLADAI  451 (459)
Q Consensus       432 g-Ris~~-----~~~~e~i~~~~~~l  451 (459)
                      | ||+-.     ++.+++++++.+-|
T Consensus       374 GlRlGT~~lT~rG~~e~dm~~iA~~I  399 (399)
T PF00464_consen  374 GLRLGTPALTRRGMKEEDMKEIAELI  399 (399)
T ss_dssp             EEEEESHHHHHTT--HHHHHHHHHHH
T ss_pred             EEEECCHHHHhCCCCHHHHHHHHhhC
Confidence            3 88632     34677777776643

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.47  E-value=2.9e-11  Score=118.14  Aligned_cols=344  Identities=13%  Similarity=0.090  Sum_probs=191.2

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC-C--CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-E--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~--~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      +...+|-..|..-..-+.-  .+++.+++.+.++.- +  ...+ ...-..+|-+.+++..... +    -++|++  +.
T Consensus        43 G~r~lDg~sg~W~~~~Gh~--~~~i~~Ai~~Q~~~l~~~~~~~~-t~~Pa~~LA~~L~~~aP~~-~----l~~vFf--~~  112 (449)
T COG0161          43 GRRYLDGMSGLWCVNHGHG--RPEIAEAIKKQLDKLPHVMFGGF-THEPAIELAEKLAELAPEG-G----LDHVFF--TD  112 (449)
T ss_pred             CCEEEecccHHHHhhcCcC--CHHHHHHHHHHHHhCCchhhccc-CCchHHHHHHHHHHhCCCC-C----ccEEEE--eC
Confidence            4467777777653333443  688888888877541 1  1112 1222566777777775421 1    378999  99


Q ss_pred             cchhHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchH--------------HHhhhCCCCeeeeeeec---C---CCC
Q 012647          159 SGTGSLRLAAALIERYF-----PG-AKVLISSPTWGNHK--------------NIFNDARVPWSEYRYYD---P---KTV  212 (459)
Q Consensus       159 ggt~a~~l~~~~~~~~~-----~g-d~Vlv~~p~y~~~~--------------~~~~~~G~~v~~v~~~~---~---~~~  212 (459)
                      ||++|++.+.++...+.     |. .++|.-..+|.+-.              ......-..+..+|...   .   ..+
T Consensus       113 sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~  192 (449)
T COG0161         113 SGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEG  192 (449)
T ss_pred             CchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCC
Confidence            99999999988876542     32 34777778885321              11111111222232211   0   011


Q ss_pred             C----CCHHHHHHHHHcCC-CCcEEEEeCCCCCC-CCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhH
Q 012647          213 G----LDFEGMIADIKAAP-GGSFILLHGCAHNP-TGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASS  285 (459)
Q Consensus       213 ~----~d~e~l~~~i~~~~-~~~~~ii~~~p~NP-TG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~  285 (459)
                      .    -..++|++.|.... +....+|.-....- +|.. +++.-|+++.++|++||+++|.||+-.+|+-.+   ....
T Consensus       193 ~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG---~~FA  269 (449)
T COG0161         193 DEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTG---KMFA  269 (449)
T ss_pred             hHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCc---hhhh
Confidence            1    23567777777754 44455554444444 6754 566669999999999999999999988887432   2222


Q ss_pred             HHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHH-HHh-hccccccCCchHHHHHHHHHhCChhhHH
Q 012647          286 VRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQ-LKR-LARPMYSNPPVHGARIVANVVGNPALFD  363 (459)
Q Consensus       286 ~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~L~~~~~~~  363 (459)
                      ... .+-.++++   .++|.+.-.=+.+|.+++   +++..+.+.+. ... .+..++ +.+.++..++..-|   +..+
T Consensus       270 ~e~-~gi~PDi~---~~aKGLT~GY~Pl~a~l~---~~~I~~~~~~~~~~~f~HG~TY-sghPlacAaAla~L---~i~e  338 (449)
T COG0161         270 CEH-AGIVPDIL---CLAKGLTGGYLPLSAVLT---SDRIYEAFSDGDAGAFMHGHTY-SGNPLACAAALANL---DILE  338 (449)
T ss_pred             hhh-cCCCCCee---eecccccccchhhHhHhh---hHHHHHHHhcccCCeeccCCcc-ccCHHHHHHHHHHH---HHHH
Confidence            211 22334555   567877633356676655   66655555543 111 122333 33333333332222   2211


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc-cC-CCCCcccccCCcceeeecCC----C---------HHHHHHHHhcccEEE
Q 012647          364 EWKAEMEMMAGRIKNVRQKLFDSLSAK-DK-SGKDWSFILRQIGMFSFTGL----N---------KAQSDNMTNKWHVYM  428 (459)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-~g-~~~~~~~~~~~~g~f~~~~l----~---------~~~~~~ll~~~gI~v  428 (459)
                      +     +.+.++.++...++.+.|+ + +. .|. +.-+ ..-|+..-+.+    .         ...+.....++|+.+
T Consensus       339 ~-----e~l~~~~~~~~~~l~~~L~-~~l~~~p~-VgdV-R~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~i  410 (449)
T COG0161         339 E-----EDLLERVAEIGAYLQAGLQ-AALADHPL-VGDV-RGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLI  410 (449)
T ss_pred             h-----cCHHHHHHHHHHHHHHHHH-HhcccCCc-EEEe-eccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEE
Confidence            0     2444555566667777776 5 21 000 1111 12233322211    1         223444454569999


Q ss_pred             cCCC-cEEEcc---CChhhHHHHHHHHHHHHhh
Q 012647          429 TKDG-RISLAG---LSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       429 ~~gg-Ris~~~---~~~e~i~~~~~~l~~~~~~  457 (459)
                      +|.| -|-++.   ++++|++++++++.+++++
T Consensus       411 Rp~g~~i~~~PPliit~~eid~l~~~l~~al~~  443 (449)
T COG0161         411 RPLGDVIYLMPPLIITREEIDELVDALREALDE  443 (449)
T ss_pred             eecCCEEEEcCCccCCHHHHHHHHHHHHHHHHH
Confidence            9998 444442   3899999999999999875

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.47  E-value=1.3e-11  Score=120.71  Aligned_cols=261  Identities=14%  Similarity=0.102  Sum_probs=161.9

Q ss_pred             eEEeecccchhHHHHHHHHHHHhC-CCCEEEEcCCCCcc-hH-HHhhhCCC-CeeeeeeecCCCCCCCHHHHHHHHHcCC
Q 012647          152 VATVQGLSGTGSLRLAAALIERYF-PGAKVLISSPTWGN-HK-NIFNDARV-PWSEYRYYDPKTVGLDFEGMIADIKAAP  227 (459)
Q Consensus       152 i~~~~t~ggt~a~~l~~~~~~~~~-~gd~Vlv~~p~y~~-~~-~~~~~~G~-~v~~v~~~~~~~~~~d~e~l~~~i~~~~  227 (459)
                      +++  +.+||++++.+  +.+.+. +|++|++.. .|.. +. ++++.+|+ ++..+..  +.+..+|+++++.  +   
T Consensus        61 ~~l--~GsGT~a~Eaa--~~nl~~~~g~~vLv~g-~FG~r~~~eia~~~g~~~v~~l~~--~~g~~~~~~~ve~--~---  128 (374)
T TIGR01365        61 GIV--PASDTGAVEMA--LWSMLGCRGVDVLAWE-SFGKGWVTDVTKQLKLPDVRVLEA--EYGKLPDLKKVDF--K---  128 (374)
T ss_pred             EEE--CCchHHHHHHH--HHHcCCCCCCeEEEEC-HHHHHHHHHHHHhcCCCCcEEEcC--CCCCCCCHHHcCC--C---
Confidence            455  88999999998  666674 889999865 5543 34 78888999 4777765  5677889998872  1   


Q ss_pred             CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc
Q 012647          228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (459)
Q Consensus       228 ~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (459)
                       .. + .+++....||+..+   ++++++.+  ++.++|+|.+ +.++..+.+.         +  .-++++.|--|.++
T Consensus       129 -~~-v-~~vhnETSTGv~np---v~~i~~~~--~~~lliVDav-Ss~g~~~l~~---------d--~iDv~~tgsQK~L~  188 (374)
T TIGR01365       129 -ND-V-VFTWNGTTSGVRVP---NGDFIPAD--REGLTICDAT-SAAFAQDLDY---------H--KLDVVTFSWQKVLG  188 (374)
T ss_pred             -CC-E-EEecCCCchheecc---cccccccc--CCCcEEEEcc-chhcCCCCCh---------h--HCcEEEEechhccC
Confidence             22 3 34445566688854   44555322  5899999999 7776543221         1  14566677788887


Q ss_pred             cCCCCcceEEEEeCChhHHHHHHHH---------HH---------hhc-cccccCCchHHHHHHHHHhCChhhHHHHHH-
Q 012647          308 LYAERIGAMNVVCSSSDLAARVKSQ---------LK---------RLA-RPMYSNPPVHGARIVANVVGNPALFDEWKA-  367 (459)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~---------~~---------~~~-~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-  367 (459)
                      +|+- ++++++   +++.+++....         +.         ... ..+...|+..+..++...|..  +.   ++ 
T Consensus       189 ~ppG-ls~v~v---s~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~--i~---~eg  259 (374)
T TIGR01365       189 GEGA-HGMLIL---SPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKW--AE---SIG  259 (374)
T ss_pred             CCCc-eEEEEE---CHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHH--HH---Hcc
Confidence            6542 667655   77766654421         11         001 112223333343433333320  00   11 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc------CCcce-eee-cC-C-----C-----HHHHHHHHhcccEEE
Q 012647          368 EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL------RQIGM-FSF-TG-L-----N-----KAQSDNMTNKWHVYM  428 (459)
Q Consensus       368 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~------~~~g~-f~~-~~-l-----~-----~~~~~~ll~~~gI~v  428 (459)
                      .++.+.++++++++.+++.++ ++|+   +....      +..-. +.+ .+ +     +     .+.+...++++||.+
T Consensus       260 Gle~~~~Rh~~~a~~l~~~l~-~lg~---l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i  335 (374)
T TIGR01365       260 GLKPLIARADDNLAVLEAFVA-KNNW---IHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAY  335 (374)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH-HCCC---cccCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHHHCCEEE
Confidence            378999999999999999999 9982   12222      11111 112 12 3     1     344565666679999


Q ss_pred             cCCC--------cEE-EccCChhhHHHHHHHHHHHHhh
Q 012647          429 TKDG--------RIS-LAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       429 ~~gg--------Ris-~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                      .+|.        ||+ ++.++.++++.+++.|.-+...
T Consensus       336 ~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~~~~~~  373 (374)
T TIGR01365       336 DIGSYRDAPSGLRIWCGATVEKSDLECLCPWLDWAFAL  373 (374)
T ss_pred             eccccccCCCceEEecCCcCCHHHHHHHHHHHHHHHhc
Confidence            8773        996 5667999999999999876543

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.46  E-value=6.7e-12  Score=130.05  Aligned_cols=173  Identities=13%  Similarity=0.092  Sum_probs=113.7

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeee
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSE  203 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~  203 (459)
                      |..-..+..+.+|+.++.+       .-.++  ++|+|.++..+  +.+.+.+||+|++...++-+....+...|+++++
T Consensus       193 ~~G~i~eAe~~AA~~fgAd-------~tyfv--vNGTS~~n~av--~~a~~~~Gd~VLvdRN~HKSv~haLilsga~PVY  261 (714)
T PRK15400        193 HSGPHKEAEEYIARVFNAD-------RSYMV--TNGTSTANKIV--GMYSAPAGSTVLIDRNCHKSLTHLMMMSDVTPIY  261 (714)
T ss_pred             CChHHHHHHHHHHHHhCCC-------cEEEE--eCchHHHHHHH--HHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEE
Confidence            3333456666666665432       44555  79999999887  6667889999999999998888889999999999


Q ss_pred             eeeecCCCC----CCC-----HHHHHHHHHcCCCCc--EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC
Q 012647          204 YRYYDPKTV----GLD-----FEGMIADIKAAPGGS--FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ  272 (459)
Q Consensus       204 v~~~~~~~~----~~d-----~e~l~~~i~~~~~~~--~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~  272 (459)
                      ++... +.+    +++     .+.+++++.+.++..  +.+++++| +=-|+++   ++++|.++|+.++  |++||||.
T Consensus       262 l~P~r-n~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~p-TYdG~~y---d~~~I~~~~~~~~--ilvDEAwg  334 (714)
T PRK15400        262 FRPTR-NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLY---NTDFIKKTLDVKS--IHFDSAWV  334 (714)
T ss_pred             ecccc-cccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECC-CCccEec---CHHHHHHHhCCCC--EEEEccch
Confidence            87542 232    335     899999998765322  24554333 2239995   5566777787776  68999987


Q ss_pred             CCC-CCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceE
Q 012647          273 GFA-SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (459)
Q Consensus       273 ~~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~  316 (459)
                      ++. +.+.-.+..++.......+.++++.|.+|.++  |+.-+..
T Consensus       335 ah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL~--alTQaS~  377 (714)
T PRK15400        335 PYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLA--AFSQASM  377 (714)
T ss_pred             hhhccCcccCCcChhhcCCCCCCceEEEEchhhccc--chhHHhH
Confidence            654 32211112222211112245699999999974  5544443

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.45  E-value=4.4e-11  Score=127.23  Aligned_cols=299  Identities=11%  Similarity=0.082  Sum_probs=177.9

Q ss_pred             CCCCCC---cccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHh------CCCCEEEEcCCCCcch
Q 012647          120 KEYLPI---EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY------FPGAKVLISSPTWGNH  190 (459)
Q Consensus       120 ~~Y~~~---~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~------~~gd~Vlv~~p~y~~~  190 (459)
                      +-|.|.   +|+-++...+..++..-.|.+    ++ ..|..||+.+........+..      ...++|+++.-.+...
T Consensus       517 hPyqPe~~sqG~lq~i~elq~~l~eltGmd----~~-Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtn  591 (939)
T TIGR00461       517 HPFQPSNQVEGYQELIAQLEKWLCSITGFD----AI-SLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTN  591 (939)
T ss_pred             CCCCchHHhHHHHHHHHHHHHHHHHHHCCC----Cc-ccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcC
Confidence            455554   344444444444443333332    22 223566776665432233322      1235899999888777


Q ss_pred             HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHhcCCeeEEec
Q 012647          191 KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQ-WEKIADVIQEKNHIPFFDV  269 (459)
Q Consensus       191 ~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~-l~~i~~l~~~~~~~ii~De  269 (459)
                      ...+..+|++++.+|.  +.++.+|+++|++.+++..++++++++++|+| +|.+   ++ +++|+++|+++|.++++|.
T Consensus       592 Pasa~~~G~~Vv~V~~--d~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~---e~~I~eI~~iah~~G~~v~VDg  665 (939)
T TIGR00461       592 PASAAMAGMQVVPVNC--DQDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVF---EPTIQHACDIVHSFGGQVYLDG  665 (939)
T ss_pred             HHHHHHCCCEEEEecc--CCCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-Ccee---cccHHHHHHHHHHcCCEEEEEe
Confidence            7778999999999998  35678999999999986445788999999999 8998   66 9999999999999999999


Q ss_pred             cCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc----cCCCCcceEEEEeCChhHHHHHHHHHH-h---------
Q 012647          270 AYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG----LYAERIGAMNVVCSSSDLAARVKSQLK-R---------  335 (459)
Q Consensus       270 ay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~----~~G~RiG~~~~v~~~~~~~~~~~~~~~-~---------  335 (459)
                      ++.. ......  .      ....+-+++++|.+|.|+    ..|-.+|++.+   .+.+...+..... .         
T Consensus       666 Aq~~-al~~l~--~------Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~v---r~~L~~~lPg~~v~~t~d~~greq  733 (939)
T TIGR00461       666 ANMN-AQVGLT--S------PGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGV---KSHLIPFLPKHDVVSMITGIGGSK  733 (939)
T ss_pred             cChh-hCCCCC--C------ccccCCCEEEecCCccCCCCCCCCCCCeEEEEE---hhhchhhcCCCcccccccCCCCcc
Confidence            9533 211111  0      123456788999999654    23334788865   3332111110000 0         


Q ss_pred             hcccc---ccCCchHHHHHHH--HHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC-Ccce---
Q 012647          336 LARPM---YSNPPVHGARIVA--NVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR-QIGM---  406 (459)
Q Consensus       336 ~~~~~---~~~~~~~~~~~~~--~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~-~~g~---  406 (459)
                      ..+..   ..+...++..+..  ..+.        .+.+++..+..-.+.+++.+.|. + +    ++..-+ ..+.   
T Consensus       734 ~Iga~s~~~~g~a~~~l~a~~yi~~lG--------~~GL~~~a~~ailnAnYl~~rL~-~-~----~~~l~~~~~~~~~h  799 (939)
T TIGR00461       734 SIGSVSAAPYGSASILPISWMYIKMMG--------NEGLPKASVVAILNANYMATRLK-D-H----YPILFVGTLKHVAH  799 (939)
T ss_pred             ccccccccccCcHHHHHHHHHHHHHHC--------HHHHHHHHHHHHHHHHHHHHHhh-c-c----CcccccCCCCceeE
Confidence            00000   0011111111111  1222        24467778888888999999998 6 2    232222 1233   


Q ss_pred             -eee--c------CCC-HHHHHHHHhcccEEEc------CCC---cEEEccCChhhHHHHHHHHHHHHhh
Q 012647          407 -FSF--T------GLN-KAQSDNMTNKWHVYMT------KDG---RISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       407 -f~~--~------~l~-~~~~~~ll~~~gI~v~------~gg---Ris~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                       |++  .      |.. .+..++|++ +|+...      +|.   +.+-.. +.++||++++++.++-++
T Consensus       800 Efv~~~~~~~~~~g~~~~dIakrL~d-~G~hapt~~~pv~g~lmiepTE~e-skeelD~f~~al~~I~~e  867 (939)
T TIGR00461       800 ECILDLRPLKAKTGIEAIDVAKRLQD-YGFHAPTLSFPVPGTLMVEPTESE-SLEELDRFCDAMIAIKEE  867 (939)
T ss_pred             EEEEeccchhhhcCCCHHHHHHHHHh-CCeeccccCCccCCeEEEEeeccC-CHHHHHHHHHHHHHHHHH
Confidence             222  1      233 455778887 598641      122   445444 789999999999877654

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PLN02452 phosphoserine transaminase

Probab=99.45  E-value=4.1e-11  Score=117.17  Aligned_cols=318  Identities=14%  Similarity=0.088  Sum_probs=182.2

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcC--------CCCCCCCC--cccHHHHHHHHHHHhcCCCCccccC-ce
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--------ENKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQ-RV  152 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--------~~~~Y~~~--~g~~~lr~aia~~l~~~~~~~~~~~-~i  152 (459)
                      .+++|+.|       +..+|+.|++++++-+.+-        ...+..+.  .-+.+.++.+.+++.    .+  .+ +|
T Consensus         7 ~~~~f~pG-------P~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~----~p--~~y~v   73 (365)
T PLN02452          7 RVFNFSAG-------PATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLD----IP--DNYEV   73 (365)
T ss_pred             ceEeeeCC-------CCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhC----CC--CCceE
Confidence            46778755       3446899999988754210        00112111  122344444555443    21  12 34


Q ss_pred             EEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcc--hHHHhhhCCCCeeeeeeec-CCCCCCCHHHHHHHHHcCCCC
Q 012647          153 ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGN--HKNIFNDARVPWSEYRYYD-PKTVGLDFEGMIADIKAAPGG  229 (459)
Q Consensus       153 ~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~--~~~~~~~~G~~v~~v~~~~-~~~~~~d~e~l~~~i~~~~~~  229 (459)
                      ++ ...|||.+++.+  +.+.+.+||++++..-+..+  +...++.+|...+...... .....++++++    +.. +.
T Consensus        74 ~~-l~Gsgt~~~ea~--~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~-~~  145 (365)
T PLN02452         74 LF-LQGGASTQFAAI--PLNLCKPGDKADFVVTGSWSKKAAKEAKKYCKTNVIASGKDEKYTKIPSVSEW----ELT-PD  145 (365)
T ss_pred             EE-EeCccHHHHHHH--HHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCCChHHc----CCC-CC
Confidence            33 267889999998  66667799988888766543  4556777886444332211 11224666664    221 24


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccC
Q 012647          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (459)
Q Consensus       230 ~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  309 (459)
                      ...+.+++....||+.++  +++++.      ++++|+|.+ +.++..+.+.         +..+ +.+ .|..|.+|++
T Consensus       146 ~~~v~~~hnETstGv~~~--~~~~i~------~~~lvVDa~-Ss~g~~pidv---------~~~~-v~~-~saqK~lGP~  205 (365)
T PLN02452        146 AKFVHICANETIHGVEFK--DYPDVG------NVPLVADMS-SNFLSKPVDV---------SKYG-VIY-AGAQKNVGPS  205 (365)
T ss_pred             CcEEEECCCCCCCcEecC--cccccC------CCeEEEECC-ccccCcccCH---------HHcC-EEE-EecccccCCC
Confidence            455556666667788543  355553      389999999 7777543321         2222 333 5999999999


Q ss_pred             CCCcceEEEEeCChhHHHHHHHH---H---H--hhccccccCCchHHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHH
Q 012647          310 AERIGAMNVVCSSSDLAARVKSQ---L---K--RLARPMYSNPPVHGARIVANVVGNPALFDEWKA-EMEMMAGRIKNVR  380 (459)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~~---~---~--~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~~~~~~~~  380 (459)
                      |  +|.+++   +++.++++...   +   .  .-...++.+|+..+..+....|+   +..  ++ .++.+.++++++.
T Consensus       206 G--l~~v~v---r~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~---~l~--~~gGl~~~~~r~~~~a  275 (365)
T PLN02452        206 G--VTIVII---RKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFE---DLL--AQGGLKAMEKRNIRKA  275 (365)
T ss_pred             C--eEEEEE---cHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHH---HHH--HccCHHHHHHHHHHHH
Confidence            9  688876   66655443211   0   0  00112223455555444443332   110  12 3789999999999


Q ss_pred             HHHHHHHhhcc-CCCCCccc-ccC--Ccc-eeee--cCC--CHHHHHHHHhcccEEEcCCC------cEEE-ccCChhhH
Q 012647          381 QKLFDSLSAKD-KSGKDWSF-ILR--QIG-MFSF--TGL--NKAQSDNMTNKWHVYMTKDG------RISL-AGLSLAKC  444 (459)
Q Consensus       381 ~~l~~~L~~~~-g~~~~~~~-~~~--~~g-~f~~--~~l--~~~~~~~ll~~~gI~v~~gg------Ris~-~~~~~e~i  444 (459)
                      +++++.|+ +. |+   +.. ..+  ... ...|  .+.  ..++.+.+ +++|+...+|.      |+|+ ..++.+++
T Consensus       276 ~~l~~~l~-~~~G~---y~~~~~~~~rs~~~vsF~~~~~~~~~~f~~~~-~~~g~~~~~G~r~~gg~R~s~yna~~~~~v  350 (365)
T PLN02452        276 DLLYDAID-ESNGF---YVCPVEKSVRSLMNVPFTLGGSELEAEFVKEA-AKAGMVQLKGHRSVGGMRASIYNAMPLAGV  350 (365)
T ss_pred             HHHHHHHH-hCCCc---ccCCCChHHhCCeEEEEEcCCchhHHHHHHHH-HHCCCcccCCccccCceEEECcCCCCHHHH
Confidence            99999998 64 43   111 111  122 2222  222  23444454 45699998872      9985 44589999


Q ss_pred             HHHHHHHHHHHhh
Q 012647          445 EYLADAIIDSYHN  457 (459)
Q Consensus       445 ~~~~~~l~~~~~~  457 (459)
                      +.+++.+++.-++
T Consensus       351 ~~L~~~m~~f~~~  363 (365)
T PLN02452        351 EKLVAFMKDFQAK  363 (365)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987665

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.45  E-value=7.5e-11  Score=118.71  Aligned_cols=334  Identities=11%  Similarity=0.028  Sum_probs=171.6

Q ss_pred             CCCceeecccccCCCCCCccCcHHHH--HHHHHHhhcCCC--CCC--CCCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVK--KAENLMLERGEN--KEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~--~a~~~~~~~~~~--~~Y--~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (459)
                      +...||+..|......++.  .|.|.  +++.+.+.....  ..+  ....-..++-+.+++... ..    .-+.+.+ 
T Consensus        37 G~~ylD~~~g~~~~~lGh~--~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~----~~~~v~f-  108 (431)
T TIGR03251        37 GRRYLDMFSFFASMALGMN--HPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFVDTFARVLG-DP----ALPHLFF-  108 (431)
T ss_pred             CCChhhcccChhhcCCCCC--ChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHhcC-CC----CcCEEEE-
Confidence            4578888777653333443  67787  777776653210  011  111112233333333320 10    1357888 


Q ss_pred             ecccchhHHHHHHHHHHHhC------C------CCEEEEcCCCCcchHHHhh-hCCCC-e------------eeeeee--
Q 012647          156 QGLSGTGSLRLAAALIERYF------P------GAKVLISSPTWGNHKNIFN-DARVP-W------------SEYRYY--  207 (459)
Q Consensus       156 ~t~ggt~a~~l~~~~~~~~~------~------gd~Vlv~~p~y~~~~~~~~-~~G~~-v------------~~v~~~--  207 (459)
                       +++|++|++.+.++...+.      .      +.+|+...-+|.+...... ..|.. .            +..|..  
T Consensus       109 -~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~  187 (431)
T TIGR03251       109 -IEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTF  187 (431)
T ss_pred             -eCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCcccC
Confidence             9999999999988876552      1      3689999988876533222 22211 0            001100  


Q ss_pred             c--CCCCC-------CCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCC
Q 012647          208 D--PKTVG-------LDFEGMIADIKAAPGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASG  277 (459)
Q Consensus       208 ~--~~~~~-------~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~  277 (459)
                      +  .....       -+++.+++.+...++....+++...+.-.|.+ .+++.+++|.++|++||+++|+||++.+++..
T Consensus       188 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~Grt  267 (431)
T TIGR03251       188 PLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLT  267 (431)
T ss_pred             CccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCcc
Confidence            0  00000       12455556665444566677766667777865 67888999999999999999999998888653


Q ss_pred             CCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHH-HHH--hhccccccCCchHHHHHHHH
Q 012647          278 SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKS-QLK--RLARPMYSNPPVHGARIVAN  354 (459)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~  354 (459)
                      +   ..+.... .+-.++++   .++|.+  +.  .|++ .  +. + +..+.. .+.  .....++ +.+.++..++..
T Consensus       268 G---~~~a~~~-~gv~PDi~---~~gK~~--~~--~g~~-~--~~-~-i~~~~~~~~~~~~~~~~T~-~gnpl~~aaa~a  330 (431)
T TIGR03251       268 G---TAWAYQQ-LGVQPDIV---AFGKKT--QV--CGIM-A--GR-R-VDEVADNVFAVPSRLNSTW-GGNLVDMVRATR  330 (431)
T ss_pred             c---hHHHHHh-cCCCCCEE---EecccC--cc--ceEE-e--cc-h-HHHhhhhcccCccccCCCC-CCCHHHHHHHHH
Confidence            2   2222222 22334544   468876  21  2444 2  22 2 111111 111  0112223 233333334333


Q ss_pred             Hh---CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCcccccCCcceeeecCC-C----HHHHHHHHhccc
Q 012647          355 VV---GNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFTGL-N----KAQSDNMTNKWH  425 (459)
Q Consensus       355 ~L---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~g~f~~~~l-~----~~~~~~ll~~~g  425 (459)
                      .|   .+.++       +++.++.-+..++.|.+... +++ +   +..+... |.++.+.+ +    ..+.+.+++ +|
T Consensus       331 ~L~~l~~~~l-------~~~~~~~g~~l~~~L~~l~~-~~~~~---i~~vrg~-G~~~~i~~~~~~~~~~~~~~l~~-~G  397 (431)
T TIGR03251       331 ILEIIEEERL-------VDNARVQGAHLLARLHELAA-EFPHL---VSNPRGR-GLMCAFDLPSTADRDEVIRQLYR-EG  397 (431)
T ss_pred             HHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHH-hCccc---eeccccc-ceeEEEEeCCHHHHHHHHHHHHh-CC
Confidence            33   22221       12333333333333333222 232 1   1122233 33322222 1    234556665 69


Q ss_pred             EEEcCCC----cEEEcc-CChhhHHHHHHHHHHH
Q 012647          426 VYMTKDG----RISLAG-LSLAKCEYLADAIIDS  454 (459)
Q Consensus       426 I~v~~gg----Ris~~~-~~~e~i~~~~~~l~~~  454 (459)
                      |.+.+.|    ||+... .+++|+++++++|.++
T Consensus       398 vl~~~~g~~~lr~~P~l~~t~~eid~~l~~l~~~  431 (431)
T TIGR03251       398 VLLLGCGERSIRFRPPLTVTREEIDAAIDAIRRV  431 (431)
T ss_pred             eEEecCCCCeEEEECCccCCHHHHHHHHHHHHhC
Confidence            9998865    765443 2899999999998763

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.43  E-value=3.1e-11  Score=125.29  Aligned_cols=172  Identities=14%  Similarity=0.066  Sum_probs=113.6

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH-hhhCCCCee
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI-FNDARVPWS  202 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~-~~~~G~~v~  202 (459)
                      |..-..+..+.+|+.++.+       +-.++  ++|+|.++..+  +.+.+.+||+|++...++-+.... +...|++++
T Consensus       172 ~eG~i~eAq~~AA~~fgAd-------~tyFl--vNGTS~gn~a~--i~a~~~~Gd~VLvdRN~HKSv~hgaLiLsGa~PV  240 (720)
T PRK13578        172 HEGAAKDAQKHAAKVFNAD-------KTYFV--LNGTSASNKVV--TNALLTPGDLVLFDRNNHKSNHHGALIQAGATPV  240 (720)
T ss_pred             CChHHHHHHHHHHHHhCCC-------ceEEE--eCChhHHHHHH--HHHhcCCCCEEEeecccHHHHHHHHHHHcCCeEE
Confidence            3333455666666665442       44555  89999999988  667788999999999999887774 889999999


Q ss_pred             eeeeecCCCC----CCCHHH-----HHHHHHcCCCC-------cEEEEeCCCCCCC--CCCCCHHHHHHHHHH-HHhcCC
Q 012647          203 EYRYYDPKTV----GLDFEG-----MIADIKAAPGG-------SFILLHGCAHNPT--GIDPTPEQWEKIADV-IQEKNH  263 (459)
Q Consensus       203 ~v~~~~~~~~----~~d~e~-----l~~~i~~~~~~-------~~~ii~~~p~NPT--G~~~s~~~l~~i~~l-~~~~~~  263 (459)
                      +++..- +.+    +++.+.     ++++|++.++.       .+++++   .|||  |++   .++++|+++ ++.++ 
T Consensus       241 Yl~P~~-n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvi---t~pTYdG~~---ydi~~I~~~~~h~~~-  312 (720)
T PRK13578        241 YLETAR-NPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVI---QLGTYDGTI---YNARQVVDKIGHLCD-  312 (720)
T ss_pred             Eeeccc-cccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEE---ECCCCccee---ecHHHHHHHhhccCC-
Confidence            987542 223    346544     88888775211       366665   4555  999   456677777 57777 


Q ss_pred             eeEEeccCCCCC-CCCCCCChhHHH-HHHhcCCeEEEEEcCCcCcccCCCCcceE
Q 012647          264 IPFFDVAYQGFA-SGSLDNDASSVR-LFATRGMELLVAQSYSKNLGLYAERIGAM  316 (459)
Q Consensus       264 ~ii~Deay~~~~-~~~~~~~~~~~~-~~~~~~~~~i~~~S~SK~~~~~G~RiG~~  316 (459)
                      .|++||||.++. +.+.-.+.+... .+..+.+.++++.|.+|.++  ++.-+..
T Consensus       313 ~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~--alTQaS~  365 (720)
T PRK13578        313 YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQA--GFSQTSQ  365 (720)
T ss_pred             cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcch--hhhhHhh
Confidence            999999987654 332111122111 11122345799999999974  5555544

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.42  E-value=3.4e-11  Score=130.14  Aligned_cols=295  Identities=12%  Similarity=0.077  Sum_probs=171.2

Q ss_pred             ccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHh--CCCC----EEEEcCCCCcchHHHhhhCCCC
Q 012647          127 GLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY--FPGA----KVLISSPTWGNHKNIFNDARVP  200 (459)
Q Consensus       127 g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~--~~gd----~Vlv~~p~y~~~~~~~~~~G~~  200 (459)
                      |.-++...+.+++..-.|.    +++.+ +.+||+++........+.+  .+||    +|++++..|......+...|++
T Consensus       539 G~l~~i~e~q~~l~eltG~----d~~sl-~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~  613 (954)
T PRK05367        539 GYRELIDQLEAWLAEITGY----DAVSL-QPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMK  613 (954)
T ss_pred             HHHHHHHHHHHHHHHHHCC----CCEEE-CccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCCE
Confidence            4545554444554443343    35554 3456666664442223322  3565    6999999998777888999999


Q ss_pred             eeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCC
Q 012647          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (459)
Q Consensus       201 v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~  280 (459)
                      ++.+|++  .++.+|+++|++++++...+..++++++|++-.+..   +++++|+++|+++|+++++|.++..-... ..
T Consensus       614 vv~v~~d--~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e---~~I~eI~~i~h~~G~~v~VDgA~~~al~~-l~  687 (954)
T PRK05367        614 VVVVACD--ENGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFE---ETIREICEIVHEHGGQVYLDGANMNAQVG-LA  687 (954)
T ss_pred             EEEECCC--CCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeec---CCHHHHHHHHHHcCCEEEEECcChhhccC-CC
Confidence            9999984  457899999999998643456777777777653334   67999999999999999999996322111 11


Q ss_pred             CChhHHHHHHhcCCeEEEEEcCCcCccc----CCCCcceEEEEeCChhHHHHHHHHHHhhc-----c---ccccCCchHH
Q 012647          281 NDASSVRLFATRGMELLVAQSYSKNLGL----YAERIGAMNVVCSSSDLAARVKSQLKRLA-----R---PMYSNPPVHG  348 (459)
Q Consensus       281 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~----~G~RiG~~~~v~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~  348 (459)
                        .+      ...+-+++..|.+|.|+.    .|-.+|++.+   .+.    +...+....     .   .........+
T Consensus       688 --~p------g~~GADi~~~s~HK~f~~P~G~GGPg~G~l~v---r~~----l~p~lpg~~v~~~~~~~~~g~v~ta~~g  752 (954)
T PRK05367        688 --RP------GDIGADVSHLNLHKTFCIPHGGGGPGVGPIGV---KAH----LAPFLPGHPVQIAGGETGIGAVSAAPFG  752 (954)
T ss_pred             --Ch------hhcCCCEEEecCcccCCCCcCCCCCceEEEee---ccc----ccccCCCCccCcCCCCCCcCcchhHHHH
Confidence              00      122456888899998642    2233778765   323    222211100     0   0111111221


Q ss_pred             HHHH----HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC-----Ccceeeec------CCC
Q 012647          349 ARIV----ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR-----QIGMFSFT------GLN  413 (459)
Q Consensus       349 ~~~~----~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~-----~~g~f~~~------~l~  413 (459)
                      +..+    ..++..-+     .+.+++..++.-.+.+++.+.|+ +. ++  +.+..+     +..+|-+.      +.+
T Consensus       753 ~al~~~~a~~yi~~~G-----~~Glr~~a~~~~~~A~Yl~~~L~-~~-~~--~~~~~~~~~~~~e~i~~~~~~~~~~g~~  823 (954)
T PRK05367        753 SASILPISWMYIRMMG-----AEGLRQATEVAILNANYIAKRLK-DH-YP--VLYTGANGRVAHECILDLRPLKESTGIT  823 (954)
T ss_pred             HHHHHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHHHHHH-hh-cC--ccccCCCCCcccceEEEeecccccCCCC
Confidence            1111    11111000     24456666666688899999997 53 11  122211     12233332      233


Q ss_pred             -HHHHHHHHhcccEEEcC------CC-cEEEccC-ChhhHHHHHHHHHHHHhh
Q 012647          414 -KAQSDNMTNKWHVYMTK------DG-RISLAGL-SLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       414 -~~~~~~ll~~~gI~v~~------gg-Ris~~~~-~~e~i~~~~~~l~~~~~~  457 (459)
                       .+..++|++ +|+...-      +. ||+.+-. +++|+++++++++.+.++
T Consensus       824 ~~di~krL~d-~G~~~~t~~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e  875 (954)
T PRK05367        824 VDDIAKRLID-YGFHAPTMSFPVAGTLMVEPTESESKAELDRFCDAMIAIRAE  875 (954)
T ss_pred             HHHHHHHHHH-CCCeEeecCCccCCEEEEEeeecCCHHHHHHHHHHHHHHHHH
Confidence             345667755 6886532      22 7776543 889999999999887765

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.41  E-value=2.3e-10  Score=115.08  Aligned_cols=334  Identities=13%  Similarity=0.092  Sum_probs=177.6

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHH-hhcCC--CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLM-LERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~-~~~~~--~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      +...+|+..|..-...++.  +|.|.+++.+. .....  ...| ......++-+.+++.+.....  -.-+.+.+  ++
T Consensus        57 G~~ylD~~sg~~~~~lGh~--~p~i~~Ai~~q~~~~~l~~~~~~-~~~~~~~la~~l~~~l~~~~p--~~~~~v~f--~~  129 (464)
T TIGR00699        57 GNRLLDLYSQISSIPIGYN--NPALLKAAQSPEMATTLINRPAL-GNFPSKDWAKILKEGILKVAP--KGQDQVWT--GM  129 (464)
T ss_pred             CCEEEEccCCHhhhcCCCC--CHHHHHHHHHHHHHHhhcccccC-CcHHHHHHHHHHHHhHHhhCC--CCcCEEEE--eC
Confidence            4578899888653333443  78899988863 22211  1122 122223344444332221110  01257888  99


Q ss_pred             cchhHHHHHHHHHHHhC------------------------CC---CEEEEcCCCCcchHHHhh-hCCC-----------
Q 012647          159 SGTGSLRLAAALIERYF------------------------PG---AKVLISSPTWGNHKNIFN-DARV-----------  199 (459)
Q Consensus       159 ggt~a~~l~~~~~~~~~------------------------~g---d~Vlv~~p~y~~~~~~~~-~~G~-----------  199 (459)
                      +|++|++.+.++...+.                        +|   .+|+....+|.+...... ..|-           
T Consensus       130 SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~  209 (464)
T TIGR00699       130 SGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAF  209 (464)
T ss_pred             CcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCC
Confidence            99999999988875541                        11   279999999876533222 1111           


Q ss_pred             CeeeeeeecCC-CC-----------CCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeE
Q 012647          200 PWSEYRYYDPK-TV-----------GLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPF  266 (459)
Q Consensus       200 ~v~~v~~~~~~-~~-----------~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~-s~~~l~~i~~l~~~~~~~ii  266 (459)
                      .+..+|..... .+           .-+++.+++.+...++....+|+.......|.+. +++-+++|.++|++||+++|
T Consensus       210 ~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI  289 (464)
T TIGR00699       210 DWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFI  289 (464)
T ss_pred             CceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence            11122221000 00           0135667777765444566666666677778766 68889999999999999999


Q ss_pred             EeccCCCCCCCCCCCChhHHHHHHhc--CCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCC
Q 012647          267 FDVAYQGFASGSLDNDASSVRLFATR--GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNP  344 (459)
Q Consensus       267 ~Deay~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  344 (459)
                      +||+..+++..+   ..+....+ +-  .++++   +++|.++-.    |+++.   .+.    +..........++ ..
T Consensus       290 ~DEV~tGfGrtG---~~fa~e~~-gv~~~PDi~---t~gK~lg~g----G~~~~---~~~----~~~~~~~~~~~T~-~g  350 (464)
T TIGR00699       290 VDEVQTGVGATG---KFWAHEHW-NLDDPPDMV---TFSKKFQTA----GYFFH---DPA----FRPNKPYRQFNTW-MG  350 (464)
T ss_pred             EeeeeeCCCCCc---chhHHHhc-CCCCCCCEE---EehhhhccC----Ccccc---chh----ccCCCCcccccCC-CC
Confidence            999987776422   22233222 21  24443   679998623    44321   221    1110001122223 33


Q ss_pred             chHHHHHHH---HHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCCCccccc--CCcceeeecCC-C---
Q 012647          345 PVHGARIVA---NVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK--SGKDWSFIL--RQIGMFSFTGL-N---  413 (459)
Q Consensus       345 ~~~~~~~~~---~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g--~~~~~~~~~--~~~g~f~~~~l-~---  413 (459)
                      +.++..++.   ..+++.           ...++.+++-+++.+.|+ ++.  .|..+..+.  .. |+++-+.+ +   
T Consensus       351 np~~~aaa~a~L~~l~~~-----------~l~~~~~~~g~~l~~~L~-~l~~~~~~~i~~vRg~G~-Glm~gie~~~~~~  417 (464)
T TIGR00699       351 DPSRALILREIIQEIKRK-----------DLLENVAHVGDYLYTGLE-DLQKKYPEFIQNLRGKGR-GTFIAWDTPDEAK  417 (464)
T ss_pred             CHHHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHHH-HHHHhCCCceeeecccCe-EEEEEEecCCHHH
Confidence            333333333   233322           233444445555555555 431  111112222  23 33322222 2   


Q ss_pred             -HHHHHHHHhcccEEEcCCC----cEEEcc-CChhhHHHHHHHHHHHH
Q 012647          414 -KAQSDNMTNKWHVYMTKDG----RISLAG-LSLAKCEYLADAIIDSY  455 (459)
Q Consensus       414 -~~~~~~ll~~~gI~v~~gg----Ris~~~-~~~e~i~~~~~~l~~~~  455 (459)
                       ..+.+.+++ +||.+.+.|    ||...- .++++++.++++|.+++
T Consensus       418 ~~~i~~~~~~-~Gvl~~~~g~~~ir~~Ppl~it~~eid~~~~~l~~~~  464 (464)
T TIGR00699       418 RDKLLKKARN-NGVNIGGCGVKAIRLRPMLVFQKHHADIFLEIISKII  464 (464)
T ss_pred             HHHHHHHHHH-CCcEEecCCCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence             233556666 599998765    665432 38999999999998764

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.40  E-value=3.9e-10  Score=109.85  Aligned_cols=329  Identities=12%  Similarity=0.070  Sum_probs=192.4

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      +-.|||-.-.     ++.-+++...++|..    + +..|.....+.+|.+.+++++..        +.+++  |+.|++
T Consensus        41 dV~IDLrSDT-----gT~apS~~m~aAM~~----G-DD~Y~gdpSv~~Lee~vael~G~--------E~alp--thqGRg  100 (467)
T TIGR02617        41 DVFIDLLTDS-----GTGAVTQSMQAAMMR----G-DEAYSGSRSYYALAESVKNIFGY--------QYTIP--THQGRG  100 (467)
T ss_pred             CeEEECccCC-----CCCCCCHHHHHHHHc----C-CcccccCchHHHHHHHHHHHhCC--------ceEEE--CCCCch
Confidence            3457776322     221126778887775    3 25687777888999999998643        44667  888999


Q ss_pred             HHHHHHHHHHHhC-CCCEEEEcCC-------C-CcchHHHhhhCCCCeeeeeee--------cCCCCCCCHHHHHHHHHc
Q 012647          163 SLRLAAALIERYF-PGAKVLISSP-------T-WGNHKNIFNDARVPWSEYRYY--------DPKTVGLDFEGMIADIKA  225 (459)
Q Consensus       163 a~~l~~~~~~~~~-~gd~Vlv~~p-------~-y~~~~~~~~~~G~~v~~v~~~--------~~~~~~~d~e~l~~~i~~  225 (459)
                      +..++..+  .+. |||++++..+       . |..........|+.++.++..        .+..+.+|++.++++|++
T Consensus       101 aE~Il~~~--~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~  178 (467)
T TIGR02617       101 AEQIYIPV--LIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEE  178 (467)
T ss_pred             HHHHHHHh--hcccccccccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhh
Confidence            99887433  356 7887775553       2 222244567788887776432        223467899999999986


Q ss_pred             CC-CCcEEEEeCCCCCC-CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCC---C-------CCCCCCCChhHHHHHHhc-
Q 012647          226 AP-GGSFILLHGCAHNP-TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG---F-------ASGSLDNDASSVRLFATR-  292 (459)
Q Consensus       226 ~~-~~~~~ii~~~p~NP-TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~---~-------~~~~~~~~~~~~~~~~~~-  292 (459)
                      .. ++.-.+...--||- -|.++|.+.++++.++|++||+.++.|.+-..   .       ++.+     .+++.++.+ 
T Consensus       179 ~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~-----~si~eI~rE~  253 (467)
T TIGR02617       179 VGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKN-----WSIEQITRET  253 (467)
T ss_pred             cCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcC-----CCHHHHHHHh
Confidence            32 11111111112344 47899999999999999999999999987311   1       1211     233333211 


Q ss_pred             -CCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHh-hc----cccccCCchHHHHHHHHHhCChhhHHHHH
Q 012647          293 -GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKR-LA----RPMYSNPPVHGARIVANVVGNPALFDEWK  366 (459)
Q Consensus       293 -~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~L~~~~~~~~~~  366 (459)
                       ..-+.+..|+||.++.|   +|.+++  .+.+.+..+....+. ..    ..++++.+.-...+.+.-|.+. ..+   
T Consensus       254 ~~~aDsvt~slsKglgAp---vGg~La--g~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~-~~~---  324 (467)
T TIGR02617       254 YKYADMLAMSAKKDAMVP---MGGLLC--FKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDG-MNL---  324 (467)
T ss_pred             hccCCEEEEEcCCCCCCc---ccceEE--ecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhc-ccH---
Confidence             12345667999998866   777743  343311112222111 11    1223333333333333223321 110   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecC-------CC------HHHHHHHHhcccEEEcCC--
Q 012647          367 AEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTG-------LN------KAQSDNMTNKWHVYMTKD--  431 (459)
Q Consensus       367 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~-------l~------~~~~~~ll~~~gI~v~~g--  431 (459)
                         +.+..+ -...++|.+.|. +.|+    .++. .||--+|++       +.      ..++-.|..+.||--..-  
T Consensus       325 ---~yl~~r-i~qv~yl~~~L~-~~Gv----pi~~-~Gghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~  394 (467)
T TIGR02617       325 ---DWLAYR-INQVQYLVNGLE-EIGV----VCQQ-AGGHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGS  394 (467)
T ss_pred             ---HHHHHH-HHHHHHHHHHHH-hCCC----cEEe-cCccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecc
Confidence               111222 234578888888 8884    4555 666555553       22      244556666778743221  


Q ss_pred             ---------C----------cEEEcc--CChhhHHHHHHHHHHHHhh
Q 012647          432 ---------G----------RISLAG--LSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       432 ---------g----------Ris~~~--~~~e~i~~~~~~l~~~~~~  457 (459)
                               |          |+++.-  +|.++++++++++..+.++
T Consensus       395 ~~~~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~  441 (467)
T TIGR02617       395 LLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN  441 (467)
T ss_pred             eecccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence                     1          777652  4889999999999988765

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.40  E-value=2.5e-10  Score=120.92  Aligned_cols=301  Identities=14%  Similarity=0.086  Sum_probs=173.5

Q ss_pred             CCCCC---CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhC-----C-CCEEEEcCCCCcch
Q 012647          120 KEYLP---IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF-----P-GAKVLISSPTWGNH  190 (459)
Q Consensus       120 ~~Y~~---~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~-----~-gd~Vlv~~p~y~~~  190 (459)
                      +-|.|   .+|+-++-..+.+++..-.|.    +.+ .++-.+|+.+.......++...     + .++|+++.-.+...
T Consensus       530 hPyqp~e~sQG~lq~i~elq~~l~eLtGm----d~~-Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtN  604 (954)
T PRK12566        530 HPFAPREQAEGYRAMIDELEAWLCAITGF----DAI-CMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTN  604 (954)
T ss_pred             CCCCchhhhcCHHHHHHHHHHHHHHHHCC----CeE-eecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccC
Confidence            45666   566655554444444333332    222 3334566666644433333321     2 35788888777555


Q ss_pred             HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEecc
Q 012647          191 KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVA  270 (459)
Q Consensus       191 ~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Dea  270 (459)
                      ...+...|++++.+|.+  +++.+|+++|++.+++..++++++++.+|++=.+..   +++++|+++|+++|.++++|.+
T Consensus       605 pasa~~~GieVv~Vp~D--~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e---~~V~eI~~iah~~Galv~vDgA  679 (954)
T PRK12566        605 PASAQMAGMRVVIVECD--PDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYE---EGIREICEVVHQHGGQVYMDGA  679 (954)
T ss_pred             HHHHHHCCCEEEEeccC--CCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceec---chHHHHHHHHHHcCCEEEEEee
Confidence            56677889999999984  356899999999998544577777777776655443   7799999999999999999999


Q ss_pred             CCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccC----CCCcceEEEEeCChhHHHHHHHHHHhhc---------
Q 012647          271 YQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY----AERIGAMNVVCSSSDLAARVKSQLKRLA---------  337 (459)
Q Consensus       271 y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~----G~RiG~~~~v~~~~~~~~~~~~~~~~~~---------  337 (459)
                      . ..+.....  .      ....+-+++.++.+|.|+.|    |.-+|.+.+   .+.    +...+...-         
T Consensus       680 ~-~~a~~~l~--~------Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav---~~~----L~pfLp~~P~~d~~G~~~  743 (954)
T PRK12566        680 N-LNAQVGLA--R------PADIGADVSHMNLHKTFCIPHGGGGPGMGPIGV---RAH----LAPFVANHPVVPVEGPDP  743 (954)
T ss_pred             C-hhhccCCC--C------hhhcCCCEEEecCCcccCcCccCCCCccchhhh---hhh----hhhhccCCCCcCCCCCCC
Confidence            4 43332211  0      12345688999999988522    222444322   222    222221110         


Q ss_pred             -cccccCCchHH---HHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCccee---e--
Q 012647          338 -RPMYSNPPVHG---ARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF---S--  408 (459)
Q Consensus       338 -~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f---~--  408 (459)
                       ....++.+..+   ..++..++..-+     .+ +.+.......+.+++.+.|. +. ++  +.+..+++.+|   +  
T Consensus       744 r~ga~S~~~~gsa~~l~~A~~Yi~~lG-----~e-Lk~aa~~ailnAnYla~rL~-~~-~~--v~~~~~~~~~~hEfii~  813 (954)
T PRK12566        744 NNGAVSAAPWGSASILPISWMYIAMMG-----PQ-LADASEVAILSANYLANQLG-GA-FP--VLYRGRNERVAHECILD  813 (954)
T ss_pred             CCCceeecccchHHHHHHHHHHHHHHC-----HH-HHHHHHHHHHHHHHHHHHhH-hh-CC--CCcCCCCCCeeeEEEEE
Confidence             01111222211   112222221101     12 55666666678889999997 52 21  23322222211   1  


Q ss_pred             ec------CCC-HHHHHHHHhcccEEEc----C--CC-cEEEccC-ChhhHHHHHHHHHHHHhh
Q 012647          409 FT------GLN-KAQSDNMTNKWHVYMT----K--DG-RISLAGL-SLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       409 ~~------~l~-~~~~~~ll~~~gI~v~----~--gg-Ris~~~~-~~e~i~~~~~~l~~~~~~  457 (459)
                      +.      +.+ .+..++|+ ++||...    |  ++ ||+.+-. +++|||+++++++.+.++
T Consensus       814 ~~~l~~~~g~~~~dvakRL~-d~Gihapt~~fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~e  876 (954)
T PRK12566        814 LRPLKAQTGISEEDVAKRLM-DYGFHAPTMSFPVPGTLMVEPTESESKAELDRFVEAMLSIRAE  876 (954)
T ss_pred             ccccccccCCCHHHHHHHHH-HCCcEEeEEeeccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHH
Confidence            11      233 34577887 4688642    2  23 8987654 889999999999988876

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=8.8e-12  Score=118.55  Aligned_cols=329  Identities=13%  Similarity=0.067  Sum_probs=197.2

Q ss_pred             CceeecccccCCCCC-CccCcHHHHHHHHHHhhc-C-CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc-
Q 012647           84 KKLNLGVGAYRTEEL-QPYVLDVVKKAENLMLER-G-ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS-  159 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~-~~~~~~~v~~a~~~~~~~-~-~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g-  159 (459)
                      .++|++.=+|+--.. .-+..+.+.+++...-.. . ....-+...-..++.+.+|+|+..       ++-+++  ..| 
T Consensus       137 ~~lNlgSYNYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~g~-------e~a~vF--~mGf  207 (519)
T KOG1357|consen  137 RCLNLGSYNYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFLGV-------EDAIVF--SMGF  207 (519)
T ss_pred             eeeeecccccccccccCCcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhcCC-------cceEEE--eccc
Confidence            356666544432111 112356677776664311 0 112222334456788888999654       566766  333 


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---------C-CCC
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---------A-PGG  229 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---------~-~~~  229 (459)
                      +|.++..    -..+.||.-|+-.+-.+.....-++..|+.++-+..+       |.+.||+.+++         + +.+
T Consensus       208 ~TNs~~~----p~l~~~gsLIiSDelNHaSi~~GaRLSgAtiRVfkHN-------dm~~LEr~Lrd~I~~gqP~Thrp~k  276 (519)
T KOG1357|consen  208 ATNSMNI----PSLLGKGSLIISDELNHASLITGARLSGATTRVFRHN-------DMQGLERLLRDAIVYGQPKTHRPWK  276 (519)
T ss_pred             cccccCc----ceeecCCcceeeccccchheeccccccCceEEEEecC-------CHHHHHHHHHHHHhcCCCCcCCcch
Confidence            2333332    2346799999998888888888888899998888773       44555555554         1 223


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH--HhcCCeEEEEEcCCcCcc
Q 012647          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF--ATRGMELLVAQSYSKNLG  307 (459)
Q Consensus       230 ~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~S~SK~~~  307 (459)
                      ..++++-.-..--|.+   ..+.+++.++++|..+++.||+++.-+.+.   ....+..+  .+..+.++..++|.|++|
T Consensus       277 ki~iivegiysmEg~i---v~Lp~vvalkkkykayl~lDEAHSiGA~g~---tGrgvce~~g~d~~dvDImMGtftKSfg  350 (519)
T KOG1357|consen  277 KILICVEGIYSMEGTI---VDLPEVVALKKKYKAYLYLDEAHSIGAMGA---TGRGVCEYFGVDPEDVDIMMGTFTKSFG  350 (519)
T ss_pred             heeeeeccceeccCee---cccHHHHHhhccccEEEEeeccccccccCC---CCcceeeccCCCchhheeecceehhhcc
Confidence            3444444444455777   778899999999999999999976554321   11122122  233457899999999999


Q ss_pred             cCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHH--HHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          308 LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVA--NVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD  385 (459)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  385 (459)
                      ..|   ||+.+   +++.++.+...... .....+.++.++|+...  ..+.+.+-    -..-++..+++.+++.+++.
T Consensus       351 a~G---Gyiag---sk~lid~lrt~s~~-~~yat~~sppvaqq~~ssl~~i~G~dg----t~~g~~k~~~l~~ns~yfr~  419 (519)
T KOG1357|consen  351 AAG---GYIAG---SKELIDYLRTPSPS-ALYATSLSPPVAQQILTSVKHIMGEDG----TNRGRQKIERLAENSRYFRW  419 (519)
T ss_pred             ccc---ceecC---cHHHHhhhccCCCc-eeecccCChHHHHHHHHHHHhhcCCCc----ccHHHHHHHHHHhhhHHHHH
Confidence            877   88755   88844443332111 11122334555555542  22222111    12346778889999999999


Q ss_pred             HHhhccCCCCCcccccCCcc----eeee-cCCCHHHHHHHHhcccEEEcCCC-----------cEEEccC-ChhhHHHHH
Q 012647          386 SLSAKDKSGKDWSFILRQIG----MFSF-TGLNKAQSDNMTNKWHVYMTKDG-----------RISLAGL-SLAKCEYLA  448 (459)
Q Consensus       386 ~L~~~~g~~~~~~~~~~~~g----~f~~-~~l~~~~~~~ll~~~gI~v~~gg-----------Ris~~~~-~~e~i~~~~  448 (459)
                      .|+ +.|    +.+...+..    +.++ ......+.++|+++ +|.++-.|           |++.+.- +.|++++++
T Consensus       420 ~l~-~~g----fivyG~~dSpVvplll~~~~k~~~f~r~~l~~-nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l  493 (519)
T KOG1357|consen  420 ELQ-KMG----FIVYGNNDSPVVPLLLYGPAKIVAFSREMLER-NIGVVVVGFPATPLLESRARFCLSASHTKEDLDRAL  493 (519)
T ss_pred             hhh-cCc----EEEecCCCCCcceeeecCcccccHHHHHHHhc-CceEEEEeCCCchHHHhHHHhhhcccccHHHHHHHH
Confidence            999 887    344444433    1111 12245667788875 77665543           7776543 789999999


Q ss_pred             HHHHHHH
Q 012647          449 DAIIDSY  455 (459)
Q Consensus       449 ~~l~~~~  455 (459)
                      +.+.++=
T Consensus       494 ~~i~~~g  500 (519)
T KOG1357|consen  494 EVIDRVG  500 (519)
T ss_pred             HHHhhhc
Confidence            8887653

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.36  E-value=2.5e-10  Score=118.48  Aligned_cols=190  Identities=11%  Similarity=0.024  Sum_probs=119.3

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeee
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSE  203 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~  203 (459)
                      |..-..+..+.+|+.++.+       +-.++  ++|+|.++..+  +.+.+.+||+|++...++-+....+...|+++++
T Consensus       193 ~~G~i~eAe~~aA~~fgAd-------~tyfv--vNGTS~~n~av--~~a~~~~Gd~VLvdRN~HKSv~~aLilsga~PVY  261 (713)
T PRK15399        193 HTGPHLEAEEYIARTFGAE-------QSYIV--TNGTSTSNKIV--GMYAAPAGSTLLIDRNCHKSLAHLLMMSDVVPIW  261 (713)
T ss_pred             CChHHHHHHHHHHHHhCCC-------cEEEE--eCChHHHHHHH--HHHhcCCCCEEEeecccHHHHHHHHHHcCCeeEE
Confidence            3333455666666665442       44555  79999999988  6667889999999999998888889999999999


Q ss_pred             eeeecCCCC----CCCH-----HHHHHHHHcCCCC--cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCee-EEeccC
Q 012647          204 YRYYDPKTV----GLDF-----EGMIADIKAAPGG--SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP-FFDVAY  271 (459)
Q Consensus       204 v~~~~~~~~----~~d~-----e~l~~~i~~~~~~--~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~i-i~Deay  271 (459)
                      ++... +.+    +++.     +.+++++++.++.  ++.+++++| +=-|++++.   ++|+++|   |+.+ ++||||
T Consensus       262 l~P~~-n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~p-TYdGi~yd~---~~I~~~~---g~~~ilvDEAh  333 (713)
T PRK15399        262 LKPTR-NALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNS-TYDGLLYNT---DWIKQTL---DVPSIHFDSAW  333 (713)
T ss_pred             ecccc-cccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECC-CCCceeeCH---HHHHHHh---CCCEEEEeccc
Confidence            87532 222    3455     8999999876532  245555444 233999554   5566666   5655 699998


Q ss_pred             CCCC-CCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHh
Q 012647          272 QGFA-SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKR  335 (459)
Q Consensus       272 ~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~  335 (459)
                      .++. +.+.-.+..++.........++++.|.+|.+  +|+.-+..+-+.+. -..+++...+..
T Consensus       334 gah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL--~alTQaS~iHvk~~-vd~~~~n~a~~m  395 (713)
T PRK15399        334 VPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKML--AAFSQASLIHIKGE-YDEETFNEAFMM  395 (713)
T ss_pred             hhhhhcCcccCCcChhhCCCCCCeeeeeeeehhccc--cccchheeeeecCC-CCHHHHHHHHHH
Confidence            7654 3221111222211001223566799999997  46666655433332 223455555544

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.33  E-value=1e-10  Score=115.12  Aligned_cols=282  Identities=13%  Similarity=0.050  Sum_probs=165.0

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCcccc-----CceEEeecccchhHHHHHHHHHHHh-C--
Q 012647          104 DVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-----QRVATVQGLSGTGSLRLAAALIERY-F--  175 (459)
Q Consensus       104 ~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~-----~~i~~~~t~ggt~a~~l~~~~~~~~-~--  175 (459)
                      ..+-+.+...++.+ ...|.......++.+.+.+++....|.+-+.     ..=++  |+|||+++..+....+.. .  
T Consensus        54 ~i~~~~l~~~~n~n-~~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~--t~Ggt~anl~al~aAR~~~~~~  130 (373)
T PF00282_consen   54 SILADLLASALNQN-GFTWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVF--TSGGTEANLYALLAARERALPR  130 (373)
T ss_dssp             HHHHHHHHHHHT-B-TTSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEE--ESSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccc-ccccccccccccchHHHHHHHHHHhCCcccccccCCCceeE--eccchHHHHHHHHHHHHHHhhh
Confidence            33444555555443 2455545566778888888887777765211     23445  899999998874333221 0  


Q ss_pred             ---CC-----C-EEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCCcEEEEeCCCCCCCC
Q 012647          176 ---PG-----A-KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTG  243 (459)
Q Consensus       176 ---~g-----d-~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~ii~~~p~NPTG  243 (459)
                         .|     + .|++++-++......+..+|..++.||++  +++.+|+++|++.+.+.   .....+|+.+.....||
T Consensus       131 ~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~--~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~G  208 (373)
T PF00282_consen  131 SKAKGVEEIPKPVIYVSEQAHYSIEKAARILGLGVRKIPTD--EDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTG  208 (373)
T ss_dssp             HHHHTTTHCSSEEEEEETTS-THHHHHHHHTTSEEEEE-BB--TTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTS
T ss_pred             hhhcccccccccccccccccccHHHHhcceeeeEEEEecCC--cchhhhHHHhhhhhcccccccccceeeeccCCCcccc
Confidence               12     2 56777768888899999999999999995  36899999999988652   11244566677899999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEEcCCcCcccCCCCcceEEEEeCC
Q 012647          244 IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (459)
Q Consensus       244 ~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (459)
                      .+   +++++|+++|+++++|+++|.+|.+...-..     ..+.+.. ...-+-+..+++|.++.| +..|++  ..++
T Consensus       209 a~---D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~-----~~~~~~~gi~~adSit~d~HK~l~~P-~~~~~~--l~r~  277 (373)
T PF00282_consen  209 AI---DPLEEIADICEKYNIWLHVDAAYGGSALLSP-----EYRHLLFGIERADSITIDPHKWLGVP-YGCGVL--LVRD  277 (373)
T ss_dssp             BB----SHHHHHHHHHHCT-EEEEEETTGGGGGGHC-----TTGGGGTTGGGESEEEEETTTTTS-S-SS-EEE--EESS
T ss_pred             cc---cCHHHHhhhccccceeeeecccccccccccc-----cccccccccccccccccchhhhhcCC-ccceeE--Eeec
Confidence            99   9999999999999999999999988332100     1111111 112345667999999854 668887  4566


Q ss_pred             hhHHHHHH----HHHHhhc---------cccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012647          323 SDLAARVK----SQLKRLA---------RPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA  389 (459)
Q Consensus       323 ~~~~~~~~----~~~~~~~---------~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  389 (459)
                      +.......    ..+....         .......+. ...++..++.-..+-   .+.+++..++..+..+++.+.|+ 
T Consensus       278 ~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR-~~~alk~w~~l~~~G---~~G~~~~i~~~~~~a~~l~~~l~-  352 (373)
T PF00282_consen  278 KSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSR-RFRALKLWATLKSLG---REGYRERIRRCIELARYLADRLR-  352 (373)
T ss_dssp             GGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSG-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             ccchHHHhccChhhhcccccccccccccccccccccc-cchHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHH-
Confidence            65322111    0010000         000111222 333332221100011   35567888888889999999999 


Q ss_pred             ccCCCCCccccc-CCcceeee
Q 012647          390 KDKSGKDWSFIL-RQIGMFSF  409 (459)
Q Consensus       390 ~~g~~~~~~~~~-~~~g~f~~  409 (459)
                      +.+.   ++++. +.-+..+|
T Consensus       353 ~~~~---~el~~~~~~~~vcF  370 (373)
T PF00282_consen  353 KDPR---FELVNEPDLNIVCF  370 (373)
T ss_dssp             TSTT---EEESSTTSSSEEEE
T ss_pred             hCCC---EEEEcCCCceEEEE
Confidence            7642   55543 44444433

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=99.30  E-value=1.4e-09  Score=102.13  Aligned_cols=334  Identities=14%  Similarity=0.127  Sum_probs=183.9

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhc--CCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER--GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~--~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...+|+..|..--.-++.  .|+|.+++.+.+..  .....|.. .-..++.++++..+-+.      -+.+++  +++
T Consensus        49 G~ryLD~f~Gi~tvslGHc--hP~v~~a~~kQl~~l~H~t~~~~~-~pi~~~Ae~L~s~~P~~------l~~vfF--~ns  117 (442)
T KOG1404|consen   49 GRRYLDAFGGIVTVSLGHC--HPDVVAAAVKQLKKLYHTTSGYLN-PPIHDLAEALVSKLPGD------LKVVFF--VNS  117 (442)
T ss_pred             CceeehhhCCeEEEEcCCC--ChHHHHHHHHhhhhhEEeeccccC-CcHHHHHHHHHHhCCCC------ceEEEE--ecC
Confidence            3456666666542222332  68888888776633  12234532 33467888888886554      245777  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh-hhCCCCeeeeeee----------cCC----CCCCC---------
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-NDARVPWSEYRYY----------DPK----TVGLD---------  215 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~-~~~G~~v~~v~~~----------~~~----~~~~d---------  215 (459)
                      |++|++++.++.......-.++....+|.+..... ..-|......++.          .++    -|+=+         
T Consensus       118 GsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~  197 (442)
T KOG1404|consen  118 GSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRY  197 (442)
T ss_pred             CchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHH
Confidence            99999999877665555557787788876543322 2222222211110          000    00001         


Q ss_pred             HHHHHHHHHcC-CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC
Q 012647          216 FEGMIADIKAA-PGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (459)
Q Consensus       216 ~e~l~~~i~~~-~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~  293 (459)
                      .+++++.+... +.....+|.-+.+---|++ +++--+++..++|+++|.++|.||+..+|+--+   ..|+.... +--
T Consensus       198 a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG---~~wgfe~h-~v~  273 (442)
T KOG1404|consen  198 AKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTG---HMWGFESH-GVV  273 (442)
T ss_pred             HHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhcccccc---cccccccc-CCC
Confidence            13444444332 3334455545555555755 566679999999999999999999988887432   34433221 111


Q ss_pred             CeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHH
Q 012647          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMA  373 (459)
Q Consensus       294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~  373 (459)
                      ++++   |++|.+| .|+.+|.++.   .+|..+-+.+...  ...++.+ +.++..++...|+   ..   +  -+++.
T Consensus       274 PDIv---TmAKgiG-nG~Pl~AVvt---t~EIa~v~~~~~~--~fnTygg-nP~a~avg~aVL~---Vi---k--ee~Lq  335 (442)
T KOG1404|consen  274 PDIV---TMAKGIG-NGFPLGAVVT---TPEIADVLNQKSS--HFNTYGG-NPVACAVGLAVLK---VI---K--EENLQ  335 (442)
T ss_pred             ccHH---HHHhhcc-CCCcceeeec---CHHHHHHHHhccc--cccccCC-CchhHHHHHHHHH---HH---H--HHhHH
Confidence            2333   8999999 8999999866   7783333332221  1223322 2333333333332   11   1  13455


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC----------CH-----HHHHHHHhcccEEEcCCC------
Q 012647          374 GRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----------NK-----AQSDNMTNKWHVYMTKDG------  432 (459)
Q Consensus       374 ~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l----------~~-----~~~~~ll~~~gI~v~~gg------  432 (459)
                      ++.++.-.+|.+.|. ++.-  ..+.+..--|--+++|+          .+     .++-.-.+++|+.+-.||      
T Consensus       336 E~aa~vG~yl~~~l~-~l~d--~h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G~vf  412 (442)
T KOG1404|consen  336 ENAAEVGSYLLEKLA-ALKD--KHPIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGVLVGKGGIHGNVF  412 (442)
T ss_pred             HHHHHHHHHHHHHHH-HHhh--cCCceeecccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCeeeecccccceEE
Confidence            555666677777776 5521  11223222222233322          11     223344455799997776      


Q ss_pred             cEEEc-cCChhhHHHHHHHH
Q 012647          433 RISLA-GLSLAKCEYLADAI  451 (459)
Q Consensus       433 Ris~~-~~~~e~i~~~~~~l  451 (459)
                      ||+-. ++|.||++.+++..
T Consensus       413 riaPPlciT~edi~f~~~~~  432 (442)
T KOG1404|consen  413 RIAPPLCITKEDIDFAVEYF  432 (442)
T ss_pred             EecCCeeccHHHHHHHHHHH
Confidence            88632 34899997766644

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.29  E-value=7.8e-10  Score=107.17  Aligned_cols=317  Identities=16%  Similarity=0.075  Sum_probs=174.9

Q ss_pred             ceeecccccCCCCCCccCcHHHHHHHHHHhhcCC--------CCCCCCC--cccHHHHHHHHHHHhcCCCCccccCceEE
Q 012647           85 KLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--------NKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVAT  154 (459)
Q Consensus        85 ~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--------~~~Y~~~--~g~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (459)
                      .++|+.|       +..+|++|++.+++.+.+-.        ..+.++.  .-+.+.++.+.+++    +.+- .-+|++
T Consensus         5 ~~nF~aG-------Pa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll----~~P~-~y~Vlf   72 (364)
T PRK12462          5 QLNFSGG-------PGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLL----GIPD-EYGVVF   72 (364)
T ss_pred             cceecCC-------CcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHh----CCCC-CCeEEE
Confidence            5677755       34468889888886653211        0112111  11123333333333    3211 123444


Q ss_pred             eecccchhHHHHHHHHHHHhCCCCEEE--EcCCCCc-chHHHhhhCCCCeeeeeeec--CCCCCCCHHHHHHHHHcCCCC
Q 012647          155 VQGLSGTGSLRLAAALIERYFPGAKVL--ISSPTWG-NHKNIFNDARVPWSEYRYYD--PKTVGLDFEGMIADIKAAPGG  229 (459)
Q Consensus       155 ~~t~ggt~a~~l~~~~~~~~~~gd~Vl--v~~p~y~-~~~~~~~~~G~~v~~v~~~~--~~~~~~d~e~l~~~i~~~~~~  229 (459)
                       ...|||++++.+  .++.+.+||+++  +..-.|. .+...++.+| ++..+....  +.+..++++.+    +.. +.
T Consensus        73 -l~GggT~~~ea~--~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~----~~~-~d  143 (364)
T PRK12462         73 -LQGGSSLQFSMI--PMNFSRPGAAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAEL----DWD-AR  143 (364)
T ss_pred             -EeccHHHHHHHH--HHHcCCCCCcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHh----ccC-CC
Confidence             256689999998  677778999665  4444443 3455666777 554443211  11234455554    221 23


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccC
Q 012647          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (459)
Q Consensus       230 ~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  309 (459)
                      ...+.++.-...||+.++        ++.+.++.++|+|.+ +.+...+.+         ++..  .++..|.-|++|+|
T Consensus       144 ~~~v~~t~NETstGv~~~--------~~~~~~~~llvvD~s-S~~~s~pid---------~~~~--dvi~agsQKnlgP~  203 (364)
T PRK12462        144 APFRHYVSNETVEGLQFP--------DAAGLPDSPLIADMS-SDFMSRPFD---------VEAY--GMVYAHAQKNLGPA  203 (364)
T ss_pred             CcEEEEccCCCCceEecC--------cccccCCCeEEEEcC-chhhCCCCC---------hHHc--cEEEeeccccCCCC
Confidence            445555555666688875        223346899999999 777644322         1222  56667788999999


Q ss_pred             CCCcceEEEEeCChhHHHHHHHH-------HHhh-ccccccCCchHHHHHHHHHhCChhhHHHHHH--HHHHHHHHHHHH
Q 012647          310 AERIGAMNVVCSSSDLAARVKSQ-------LKRL-ARPMYSNPPVHGARIVANVVGNPALFDEWKA--EMEMMAGRIKNV  379 (459)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~--~~~~~~~~~~~~  379 (459)
                      |  ++.+++   +++.+++....       .... ...++.+||.....++...|+   +..  ++  .++.+.++.+++
T Consensus       204 G--ltvviv---s~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~---~i~--~e~GGl~~~~~r~~~k  273 (364)
T PRK12462        204 G--VTVAII---RRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLR---WIR--DEIGGVHAMRDINARK  273 (364)
T ss_pred             c--eEEEEE---CHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHH---HHH--HhccCHHHHHHHHHHH
Confidence            8  566655   66655543321       1111 122333555555555543331   110  23  478889999999


Q ss_pred             HHHHHHHHhhccC-CCCCcccc-cC--CcceeeecC-----CCHHHHHHHHhcccEEEcCC-----C-cEEEcc-CChhh
Q 012647          380 RQKLFDSLSAKDK-SGKDWSFI-LR--QIGMFSFTG-----LNKAQSDNMTNKWHVYMTKD-----G-RISLAG-LSLAK  443 (459)
Q Consensus       380 ~~~l~~~L~~~~g-~~~~~~~~-~~--~~g~f~~~~-----l~~~~~~~ll~~~gI~v~~g-----g-Ris~~~-~~~e~  443 (459)
                      .+.+++.+. +.+ +   +... .+  ..-+-+...     ++.+|++.+- ++|+....|     | |+|+-. .+.|.
T Consensus       274 a~~ly~~id-~~~~~---~~~~~~~~~RS~mnv~f~~~~~~l~~~f~~~a~-~~gl~~lkGhr~vgg~Ras~yna~~~e~  348 (364)
T PRK12462        274 AAMLYATLD-ALNEV---IDCHAHRAARSTMNVAFRFRQPRLDTLFKEQST-EAGFCGLSGHRSIGGIRASLYNAVSEQA  348 (364)
T ss_pred             HHHHHHHHH-hCCCc---ccCCCChhhcCcceEEEEcCCHHHHHHHHHHHH-HCCCccccCCcccCceEEEcCCCCCHHH
Confidence            999999999 764 2   1111 11  111111111     2334444444 469988776     3 998654 48888


Q ss_pred             HHHHHHHHHHHHhh
Q 012647          444 CEYLADAIIDSYHN  457 (459)
Q Consensus       444 i~~~~~~l~~~~~~  457 (459)
                      ++.+++-+++.-++
T Consensus       349 v~~L~~fm~~f~~~  362 (364)
T PRK12462        349 VSRLCAFLKDFAIR  362 (364)
T ss_pred             HHHHHHHHHHHHHh
Confidence            88888888877654

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.29  E-value=9.6e-10  Score=109.81  Aligned_cols=184  Identities=17%  Similarity=0.081  Sum_probs=125.7

Q ss_pred             cHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeee
Q 012647          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY  207 (459)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~  207 (459)
                      ..+..+..|+.+..+       ...++  ++|.+.|+..+  +.+.+.+||+|+++.+++-+....+...|+.++++...
T Consensus        72 i~eAqe~aA~~fgAd-------~tyFv--vNGTS~ank~v--i~a~~~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~  140 (557)
T COG1982          72 IKEAQELAARVFGAD-------HTYFV--VNGTSTANKAV--INAVLTPGDKVLVDRNCHKSIHHGLILAGATPVYLEPS  140 (557)
T ss_pred             HHHHHHHHHHHhCCC-------ceEEE--ECCccHHHHHH--HHhhcCCCCEEEecCCccHHHHHHHHHcCCceEEecCC
Confidence            456666667775442       44555  79999999988  67778899999999999988888888999999987754


Q ss_pred             cCC----CCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC--CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCC
Q 012647          208 DPK----TVGLDFEGMIADIKAAPGGSFILLHGCAHNPT--GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN  281 (459)
Q Consensus       208 ~~~----~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT--G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~  281 (459)
                      .+.    -++++.+.+++++.+.+...+++++   .|||  |++++   +++|.+.+.+.++|+.+|++.. ...+-.+ 
T Consensus       141 ~np~~gi~ggI~~~~~~~~l~~~~~~~k~~vi---tnpTYdGv~~n---~~~i~~~~~~~~a~v~~deah~-~~~~~~~-  212 (557)
T COG1982         141 RNPLYGIIGGIPLETFKEALLAHPDAEKLAVI---TNPTYDGVCYN---LRKIVELLHHYGAWVLYDEAHP-AHFDFSP-  212 (557)
T ss_pred             CCccccccCCCCHHHHHHHHHhChhhheeEEE---ecCccceEeec---HHHHHHHHhhcCceEEhhhcCc-ccccccc-
Confidence            333    2477999999998876554255554   6787  99954   5568888899999999999943 3322110 


Q ss_pred             ChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCC-hhHHHHHHHHHHh
Q 012647          282 DASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS-SDLAARVKSQLKR  335 (459)
Q Consensus       282 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~-~~~~~~~~~~~~~  335 (459)
                      ..+   ......+.+++..|.+|.++  ++.-+-.+-+..+ .-..+++...+..
T Consensus       213 ~l~---~~~~~~~~~~~tqS~HK~l~--alSQaS~iHv~~~~~~~~~r~nea~~~  262 (557)
T COG1982         213 MLP---ESALNGGADFVTQSTHKLLA--ALSQASMIHVKDGRAVNHERFNEALMM  262 (557)
T ss_pred             cCc---chhhhcCceEEEechhhhhh--hhhhhHHHhhCCCccCCHHHHHHHHHH
Confidence            011   11233568999999999975  4444444322221 2224456665554

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.29  E-value=5e-09  Score=111.70  Aligned_cols=343  Identities=13%  Similarity=0.106  Sum_probs=179.8

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhH
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (459)
                      ..+|+..|......+. ...|++.+++.+.+.+-. +-..+.. ..+-...+|+.+....+.. .-++|++  +.+|++|
T Consensus       366 ~ylD~~sg~w~~~lG~-h~~p~I~~Ai~~Qa~rl~-hv~~~~~-~hepa~~LAe~L~~~~~~~-~l~rVff--s~sGSeA  439 (817)
T PLN02974        366 QQFDACASWWTQGPDP-TLQPELARAVAYAAGRYG-HVMFPEN-VHEPALRAAELLLGGPGKG-WASRVFF--SDNGSTA  439 (817)
T ss_pred             eEEEcchhHHHhCCCc-CCCHHHHHHHHHHHhhCC-ccccCcc-CCHHHHHHHHHHHhccCCC-CCCEEEE--CCchHHH
Confidence            4677777654222221 127889999988876521 1111111 1233344555543321100 0257999  9999999


Q ss_pred             HHHHHHHHHH-hC--C----------------CCEEEEcCCCCcchHHH-hhhCCC---------C-----eeee--eee
Q 012647          164 LRLAAALIER-YF--P----------------GAKVLISSPTWGNHKNI-FNDARV---------P-----WSEY--RYY  207 (459)
Q Consensus       164 ~~l~~~~~~~-~~--~----------------gd~Vlv~~p~y~~~~~~-~~~~G~---------~-----v~~v--~~~  207 (459)
                      ++.+.++... +.  .                ..+||....+|.+..-- +...|-         .     ...+  |..
T Consensus       440 vE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~  519 (817)
T PLN02974        440 IEVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTV  519 (817)
T ss_pred             HHHHHHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCcc
Confidence            9999988743 31  1                24699999888753221 111110         0     0001  110


Q ss_pred             ---c-------CCC-----------CC-----CC------------HHHHHHHHHc-----CCCCcEEEEeCC-CCCCCC
Q 012647          208 ---D-------PKT-----------VG-----LD------------FEGMIADIKA-----APGGSFILLHGC-AHNPTG  243 (459)
Q Consensus       208 ---~-------~~~-----------~~-----~d------------~e~l~~~i~~-----~~~~~~~ii~~~-p~NPTG  243 (459)
                         .       +..           |.     +|            .+.+++.+..     .+++...+|+.. .+.-.|
T Consensus       520 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGG  599 (817)
T PLN02974        520 GMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGG  599 (817)
T ss_pred             ccccccccccCCccccccccccccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCC
Confidence               0       000           00     01            2456666652     123445555444 366678


Q ss_pred             CC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeC
Q 012647          244 ID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCS  321 (459)
Q Consensus       244 ~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~  321 (459)
                      .+ +++.-+++|.++|++||+++|.||++.+|+--+   ..+.... .+-.++++   .++|.++ .| +.+|.+++   
T Consensus       600 mi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG---~~fa~e~-~gv~PDIi---~~gKgLt-gG~~Plaa~l~---  668 (817)
T PLN02974        600 MLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLG---VESAWEL-LGCKPDIA---CYAKLLT-GGLVPLAATLA---  668 (817)
T ss_pred             cccCCHHHHHHHHHHHHHhCCEEEEeecccCCCccc---chhhHHh-cCCCCCEE---eeccccc-CCCCccEEEEE---
Confidence            76 467889999999999999999999999996432   2233322 23345555   5899998 78 58999877   


Q ss_pred             ChhHHHHHHHHHH--h-hccccccCCchHHHHHH---HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH----HHHhhcc
Q 012647          322 SSDLAARVKSQLK--R-LARPMYSNPPVHGARIV---ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF----DSLSAKD  391 (459)
Q Consensus       322 ~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~---~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~L~~~~  391 (459)
                      +++..+.+...-.  . .+..++ +.+.++..++   ..+++++++.+.|       .+.-++..+++.    +.|. ++
T Consensus       669 ~~~I~~~f~~~~~~~~~~hg~Ty-~gnpl~cAaala~L~~~~~~~~~~~l-------~~~~~~l~~~l~~~l~~~l~-~~  739 (817)
T PLN02974        669 TEEVFEAFRGPSKLDALLHGHSY-TAHPMGCAAAAKALQWYKDPSTNPNL-------IPPGSRLRELWDEELVRAIS-SL  739 (817)
T ss_pred             cHHHHHhhccccccCCcccCCCC-CcCHHHHHHHHHHHHHHHcccHHHHH-------HHHHHHHHHHHHHHHHHHHh-hC
Confidence            7785554431100  1 122333 3333333333   3345554443222       222233333333    3333 33


Q ss_pred             CCCCCcccccCCcceeee--cC------C----CHHHHHHHHhcccEEEcCCC---cEEEc-cCChhhHHHHHHHHHHHH
Q 012647          392 KSGKDWSFILRQIGMFSF--TG------L----NKAQSDNMTNKWHVYMTKDG---RISLA-GLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       392 g~~~~~~~~~~~~g~f~~--~~------l----~~~~~~~ll~~~gI~v~~gg---Ris~~-~~~~e~i~~~~~~l~~~~  455 (459)
                      +.   +.-+...|-++..  ..      .    ...+.+.++.++||.+++.|   |+... ..+++++++++++|.+.+
T Consensus       740 p~---V~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~Gnvi~l~pP~~i~~e~l~~~~~~l~~~~  816 (817)
T PLN02974        740 PN---VERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPLGNVVYLMCGPTTSPETCTRLLRKVYRRL  816 (817)
T ss_pred             CC---eeEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEecCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            21   1222223222211  11      0    11234556525799999976   44322 238899999999998765

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.28  E-value=1.1e-09  Score=118.61  Aligned_cols=306  Identities=11%  Similarity=0.052  Sum_probs=183.0

Q ss_pred             eecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCc---------ccHHHHHHHHHHHhcCCCCccccCceEEeec
Q 012647           87 NLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIE---------GLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (459)
Q Consensus        87 ~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~---------g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (459)
                      -++.|.|    .. .+|+.|.+.+.+.  ..+...|.|.+         -+.++++.++++..-.      ..++.+  +
T Consensus        80 ~ig~G~y----~~-~~P~vi~~~i~~~--~~~~t~ytPyQ~EisQG~Leal~~~Qt~la~LtG~~------~anaSl--~  144 (954)
T PRK05367         80 YIGQGYY----GT-HTPPVILRNILEN--PAWYTAYTPYQPEISQGRLEALLNFQTMVADLTGLE------IANASL--L  144 (954)
T ss_pred             ccCCCCC----CC-cCcHHHHHHHHhC--cchhhccCCCChHHHHHHHHHHHHHHHHHHHHHCCC------hhhccc--c
Confidence            4577776    22 3466665544442  23345666633         3356778888886432      677888  8


Q ss_pred             ccchhHHHHHHHHHHHhCC--CCEEEEcCCCCcchHHHh----hhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcE
Q 012647          158 LSGTGSLRLAAALIERYFP--GAKVLISSPTWGNHKNIF----NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (459)
Q Consensus       158 ~ggt~a~~l~~~~~~~~~~--gd~Vlv~~p~y~~~~~~~----~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~  231 (459)
                      .++|.+.+.+...+ .+.+  +|+|++++-.|+.....+    +..|++++.+|..+      |++       .  +.+.
T Consensus       145 d~aTAa~ea~~~a~-~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~------d~~-------~--~~~~  208 (954)
T PRK05367        145 DEATAAAEAMALAK-RVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAK------ALD-------H--DDVF  208 (954)
T ss_pred             ccHHHHHHHHHHhh-hhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCcc------CCC-------c--ccEE
Confidence            89999988764333 2445  489999999998877654    56799999998732      111       1  2444


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC-----c
Q 012647          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN-----L  306 (459)
Q Consensus       232 ~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-----~  306 (459)
                      .+++.+| |-+|.+   +++++|+++|+++|+++++|.....+....   +       ..+.+-+++++|..|.     |
T Consensus       209 ~vlvq~p-~~~G~i---~d~~~i~~~ah~~Gal~~vda~~~Al~~l~---~-------pge~GaDi~vgs~qkfg~P~g~  274 (954)
T PRK05367        209 GVLLQYP-GTSGEV---RDYTALIAAAHARGALVAVAADLLALTLLT---P-------PGEMGADIAVGSAQRFGVPMGF  274 (954)
T ss_pred             EEEEecC-CCCeee---ccHHHHHHHHHHcCCEEEEEehhhhccCCC---C-------hhhcCCCEEEeeCcccCCCCCC
Confidence            4554444 788999   679999999999999999987532343211   1       1344567888888997     6


Q ss_pred             ccCCCCcceEEEEeCChhHHHHHHHHHHhh--------------------cccc--ccCCchHHHHH--HHHHhCChhhH
Q 012647          307 GLYAERIGAMNVVCSSSDLAARVKSQLKRL--------------------ARPM--YSNPPVHGARI--VANVVGNPALF  362 (459)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~--------------------~~~~--~~~~~~~~~~~--~~~~L~~~~~~  362 (459)
                      |-||  .|++++   .+++...+.-.+...                    ++..  +++..+ .|..  +...+ --.+.
T Consensus       275 GGP~--aGflav---r~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict-~qaL~a~~a~~-y~~~~  347 (954)
T PRK05367        275 GGPH--AAYFAV---RDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICT-AQVLLAVMASM-YAVYH  347 (954)
T ss_pred             CCCC--EEEEEE---CHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccch-HHHHHHHHHHH-HHHHH
Confidence            6565  899876   555332221110000                    0000  111111 1111  11000 00010


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCC-cceeee-cCCCH-HHHHHHHhcccEEEcCC--C--cEE
Q 012647          363 DEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ-IGMFSF-TGLNK-AQSDNMTNKWHVYMTKD--G--RIS  435 (459)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~-~g~f~~-~~l~~-~~~~~ll~~~gI~v~~g--g--Ris  435 (459)
                      .  .+.++++.++...+..++.+.|+ +.|    +++..+. .+.+.+ .+.+. +..++|++ +||.+..-  +  |||
T Consensus       348 g--~~Gl~~Ia~~~~~la~~l~~~L~-~~G----~~~~~~~~f~~~~~~~~~~~~~i~~~l~~-~gi~~~~~~~~~l~is  419 (954)
T PRK05367        348 G--PEGLKAIARRVHRLAAILAAGLR-ALG----LEVVHDSFFDTLTVEVGGDAAAVLARALA-AGINLRRVDDDHVGIS  419 (954)
T ss_pred             h--hhhHHHHHHHHHHHHHHHHHHHH-hcC----cccCCCCCCCeEEEeCCCCHHHHHHHHHH-CCceeccccCCEEEEE
Confidence            0  24578889999999999999998 766    3433221 122222 22244 44556665 59988543  2  888


Q ss_pred             EccC-ChhhHHHHHHHHH
Q 012647          436 LAGL-SLAKCEYLADAII  452 (459)
Q Consensus       436 ~~~~-~~e~i~~~~~~l~  452 (459)
                      +... |+++|+.++++|.
T Consensus       420 ~~e~~t~~did~l~~~l~  437 (954)
T PRK05367        420 LDETTTREDLAALLAVFG  437 (954)
T ss_pred             ecccCCHHHHHHHHHHHc
Confidence            8765 7899999999996

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.26  E-value=2e-09  Score=100.95  Aligned_cols=204  Identities=21%  Similarity=0.212  Sum_probs=119.7

Q ss_pred             cHHHHHHHHHHhh-c---CCCCCCC-CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCC
Q 012647          103 LDVVKKAENLMLE-R---GENKEYL-PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG  177 (459)
Q Consensus       103 ~~~v~~a~~~~~~-~---~~~~~Y~-~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~g  177 (459)
                      ...|++|+++.-- .   ....+|+ ...|=+.+.+-.|+.+..       ++-++=.|..+||.|+.++  ++..++||
T Consensus        26 q~KVL~Af~~~~vs~~hf~~tTGYGY~D~GRd~le~iyA~vfga-------E~ALVRpq~vSGTHAi~~~--Lfg~LrpG   96 (403)
T PF06838_consen   26 QLKVLKAFQENRVSDSHFAGTTGYGYDDIGRDKLERIYADVFGA-------EDALVRPQFVSGTHAIALA--LFGVLRPG   96 (403)
T ss_dssp             HHHHHHHHHHTT--GGGCS---TT-TT-HHHHHHHHHHHHHCT--------SEEEEETTS-SHHHHHHHH--HHHH--TT
T ss_pred             HHHHHHHHHHcCCChhhcCCCCcCCCCCccHHHHHHHHHHHhCc-------hhhhhcccccchHHHHHHH--HHhcCCCC
Confidence            3556677665321 1   1112332 233545555555665433       2334445678999999998  78889999


Q ss_pred             CEEEEcC-CCCcchHHH----------hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEe-CCCCCCCCCC
Q 012647          178 AKVLISS-PTWGNHKNI----------FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH-GCAHNPTGID  245 (459)
Q Consensus       178 d~Vlv~~-p~y~~~~~~----------~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~-~~p~NPTG~~  245 (459)
                      |+.+... .-|.....+          ++..|.+...+|+.  +++.+|++.+++++++   +++++.+ =+-..-+=..
T Consensus        97 D~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~v~L~--~dg~~D~~~i~~~~~~---~tk~v~IQRSrGYs~R~s  171 (403)
T PF06838_consen   97 DELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKYREVPLT--EDGTIDWEAIKKALKP---NTKMVLIQRSRGYSWRPS  171 (403)
T ss_dssp             -EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE--B---TTSSB-HHHHHHHHHT---TEEEEEEE-S-TTSSS--
T ss_pred             CeEEEcCCCchhhHHHHhCCCCCCCCChHHhCceeEEEeec--CCCCcCHHHHHHhhcc---CceEEEEecCCCCCCCCC
Confidence            9988655 334333433          34567888899984  4678999999999996   6666654 3333334445


Q ss_pred             CCHHHHHHHHHHHHh--cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc--ceEEEEeC
Q 012647          246 PTPEQWEKIADVIQE--KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI--GAMNVVCS  321 (459)
Q Consensus       246 ~s~~~l~~i~~l~~~--~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri--G~~~~v~~  321 (459)
                      ++.++++++++++++  .++++++|++|.+|....   ++.       .-.-+++.+|+=|+.| .|+--  ||+++   
T Consensus       172 l~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~---EP~-------~vGADl~aGSLIKNpG-GgiAptGGYIaG---  237 (403)
T PF06838_consen  172 LTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQ---EPT-------EVGADLMAGSLIKNPG-GGIAPTGGYIAG---  237 (403)
T ss_dssp             --HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS----GG-------GGT-SEEEEETTSGGG-TTT-SS-EEEEE---
T ss_pred             CCHHHHHHHHHHHHhhCCCeEEEEeCCcceecccc---Ccc-------ccchhheeccceeCCC-CCccCcCCEEec---
Confidence            788999999999986  589999999999998531   111       1235799999999986 44321  77655   


Q ss_pred             ChhHHHHHHHHHH
Q 012647          322 SSDLAARVKSQLK  334 (459)
Q Consensus       322 ~~~~~~~~~~~~~  334 (459)
                      .+++.++...++.
T Consensus       238 r~~lVe~~a~RLT  250 (403)
T PF06838_consen  238 RKDLVERAAYRLT  250 (403)
T ss_dssp             SHHHHHHHHHHHS
T ss_pred             hHHHHHHHHhhhc
Confidence            8887777665553

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.23  E-value=6.3e-10  Score=108.49  Aligned_cols=221  Identities=16%  Similarity=0.110  Sum_probs=127.0

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCC---CCCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY---LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y---~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      +...+|+..|.--..-+..  +|.+.+++++.+.... +..   ....-..+|-+.+.+....      ..+++.+  +.
T Consensus        15 G~~~lD~~~~~~~~~lGh~--~p~i~~ai~~~~~~~~-~~~~~~~~~~~~~~la~~L~~~~p~------~~~~v~f--~~   83 (339)
T PF00202_consen   15 GREYLDFMSGYGSVNLGHN--HPEIAEAIAEQANKLN-YVSFSGFTHPEAAELAEKLAELFPG------GLDRVFF--AN   83 (339)
T ss_dssp             SEEEEESSHHHHTTTT-BT---HHHHHHHHHHHHHCS-SCSTTTSEEHHHHHHHHHHHHHSST------TEEEEEE--ES
T ss_pred             CCEEEECCCCccceecCCC--ccccchhHHHHhhhcc-cccccceeccchhhhhhhhhhcccc------ccceeee--cc
Confidence            3468898877542233433  6889999988876532 111   1122223444444444311      1468888  99


Q ss_pred             cchhHHHHHHHHHH------HhCCCCEEEEcCCCCcchHHH-hh------------hCCCCeeeeeeecCCC---CCCCH
Q 012647          159 SGTGSLRLAAALIE------RYFPGAKVLISSPTWGNHKNI-FN------------DARVPWSEYRYYDPKT---VGLDF  216 (459)
Q Consensus       159 ggt~a~~l~~~~~~------~~~~gd~Vlv~~p~y~~~~~~-~~------------~~G~~v~~v~~~~~~~---~~~d~  216 (459)
                      +|++|++.+.++..      ......+|+....+|.+.... +.            .....+..+|..+...   ..-..
T Consensus        84 sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  163 (339)
T PF00202_consen   84 SGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACL  163 (339)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHH
Confidence            99999999988876      333557999999888753221 11            1111334555521100   00001


Q ss_pred             HHHHHHHHc-CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC
Q 012647          217 EGMIADIKA-APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM  294 (459)
Q Consensus       217 e~l~~~i~~-~~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~  294 (459)
                      +.+++.+.+ ..+....+|+...+...|.. ++++-+++|.++|++||+++|.||++.+++-.+   ..+.... ....+
T Consensus       164 ~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG---~~~a~~~-~gv~P  239 (339)
T PF00202_consen  164 NALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTG---KFFASEH-YGVDP  239 (339)
T ss_dssp             HHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTS---SSSGHHH-HTSSS
T ss_pred             HHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccC---Cccceec-ccccC
Confidence            113332221 11344555554455555654 567779999999999999999999999885332   2233322 34445


Q ss_pred             eEEEEEcCCcCcccCCCCcceEEEEeCChh
Q 012647          295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (459)
Q Consensus       295 ~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~  324 (459)
                      +++   +++|.++ .|+.+|.+.+   +++
T Consensus       240 Div---~~gK~l~-gG~p~sav~~---~~~  262 (339)
T PF00202_consen  240 DIV---TFGKGLG-GGLPISAVLG---SEE  262 (339)
T ss_dssp             SEE---EEEGGGG-TTSSEEEEEE---EHH
T ss_pred             ccc---ccccchh-hhhhcccccc---cch
Confidence            555   4579999 7899999876   666

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.21  E-value=4.1e-09  Score=113.83  Aligned_cols=311  Identities=12%  Similarity=0.053  Sum_probs=180.8

Q ss_pred             eecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCC-----cc----cHHHHHHHHHHHhcCCCCccccCceEEeec
Q 012647           87 NLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI-----EG----LAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (459)
Q Consensus        87 ~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~-----~g----~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (459)
                      .++.|.|    .. .+|+.|.+.+.+...-  ...|+|.     +|    +.++++.|+++..-.      ++++.+  +
T Consensus       107 fiG~G~y----~~-~~P~~v~~~i~~~~~~--~TaytPYqaEisQG~lqal~~~Qt~ia~LtG~~------~anaSL--~  171 (993)
T PLN02414        107 YIGMGYY----NT-HVPPVILRNILENPGW--YTQYTPYQAEIAQGRLESLLNYQTMITDLTGLP------MSNASL--L  171 (993)
T ss_pred             ccCCCCC----Cc-cCCHHHHHHHHhChHH--HhhcCCCchHHHHHHHHHHHHHHHHHHHHhCCC------hhhEee--c
Confidence            3456665    22 2477777777665421  2344442     23    567888889886433      788999  9


Q ss_pred             ccchhHHHHHHHHHHHhCCC--CEEEEcCCCCcchHHHhh----hCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcE
Q 012647          158 LSGTGSLRLAAALIERYFPG--AKVLISSPTWGNHKNIFN----DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (459)
Q Consensus       158 ~ggt~a~~l~~~~~~~~~~g--d~Vlv~~p~y~~~~~~~~----~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~  231 (459)
                      .++|.+.+.+.... .+.+|  |+|++++..|+.+...++    ..|++++.+|..+ .    +      ...   +...
T Consensus       172 d~aTAaaea~~~a~-~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~-~----~------~~~---~~v~  236 (993)
T PLN02414        172 DEGTAAAEAMAMCN-NILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKD-F----D------YSS---GDVC  236 (993)
T ss_pred             CChHHHHHHHHHHH-hcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchh-h----c------ccc---CceE
Confidence            99999999874332 24544  789999999998876664    4688999888731 1    1      011   1233


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc---
Q 012647          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL---  308 (459)
Q Consensus       232 ~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~---  308 (459)
                      .+++ ..-|-+|.+   .++++|+++|+++|+++++ .+ +.++.....    +    ....+.++++++..|..++   
T Consensus       237 ~vlv-q~P~~~G~v---~dv~~I~~~ah~~GaL~iV-aa-d~lal~~l~----~----pge~GADi~vgsgqKwg~P~G~  302 (993)
T PLN02414        237 GVLV-QYPATDGEV---LDYAEFVKNAHANGVKVVM-AT-DLLALTMLK----P----PGEWGADIVVGSAQRFGVPMGY  302 (993)
T ss_pred             EEEE-ecCCCCeEE---cCHHHHHHHHHHcCCEEEE-EE-CHHHhcCCC----C----HhhccCcEEEECCCccccCCCC
Confidence            3332 122348999   7788999999999999999 44 333332221    0    1234567889999998722   


Q ss_pred             CCCCcceEEEEeCChhHHHHHHHHHHhh--------------------ccccccCCchH---HHHHHHHHhCChhhHHHH
Q 012647          309 YAERIGAMNVVCSSSDLAARVKSQLKRL--------------------ARPMYSNPPVH---GARIVANVVGNPALFDEW  365 (459)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~---~~~~~~~~L~~~~~~~~~  365 (459)
                      .|-+.|++++   .++....+...+...                    .+......+..   +..++.... .-.+..  
T Consensus       303 GGP~aGflav---r~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~-y~~~~g--  376 (993)
T PLN02414        303 GGPHAAFLAT---SQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAM-YAVYHG--  376 (993)
T ss_pred             CCCCeeEEEE---CHHHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHH-HHHHhc--
Confidence            2345899876   555322111000000                    00000011111   111111100 000000  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC-Ccceeee-cCCCHHHHHHHHhcccEEEcCC--C--cEEEccC
Q 012647          366 KAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR-QIGMFSF-TGLNKAQSDNMTNKWHVYMTKD--G--RISLAGL  439 (459)
Q Consensus       366 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~-~~g~f~~-~~l~~~~~~~ll~~~gI~v~~g--g--Ris~~~~  439 (459)
                      ...++++.++..++..++.+.|. +.|    +++..+ ..+.|.+ ++-+.+..++|.+ +||.++..  +  |+|+...
T Consensus       377 ~~Gl~~Ia~ri~~la~~l~~~L~-~~G----~~~~~~~~f~~vt~~~~~~~~v~~~L~~-~gI~l~~~~~~~lrvs~~e~  450 (993)
T PLN02414        377 PEGLKTIAQRVHGLAGVFAAGLK-KLG----FQVQSLPFFDTVKVKCSDADAIADAAAK-VGINLRVVDANTVTVSFDET  450 (993)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHh-hcC----CccCCCCCcCeEEEecCCHHHHHHHHHH-CCCeeEEecCCeEEEEeecc
Confidence            13467888999999999999998 876    344322 2223332 2323344556655 59877543  3  8888765


Q ss_pred             -ChhhHHHHHHHHHH
Q 012647          440 -SLAKCEYLADAIID  453 (459)
Q Consensus       440 -~~e~i~~~~~~l~~  453 (459)
                       |++||+.++++|..
T Consensus       451 ~T~edId~L~~~l~~  465 (993)
T PLN02414        451 TTLEDVDKLFKVFAG  465 (993)
T ss_pred             CCHHHHHHHHHHHcc
Confidence             78999999999963

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=99.16  E-value=2.4e-08  Score=103.09  Aligned_cols=164  Identities=10%  Similarity=0.041  Sum_probs=114.8

Q ss_pred             CcHHHHHHH-HHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhC--C--
Q 012647          102 VLDVVKKAE-NLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF--P--  176 (459)
Q Consensus       102 ~~~~v~~a~-~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~--~--  176 (459)
                      .++.+...+ ......+ ...|....+...+.+.+.+++.+..|.+-  ..=.+  |+|||.|+..+..+.+...  |  
T Consensus        95 ~~paila~~~a~~~N~n-~~~~e~SP~~t~lE~~vi~~la~l~G~~~--~~G~~--TsGGT~ANl~aL~~AR~~k~~p~a  169 (608)
T TIGR03811        95 LMPAILAYNYAMLWNGN-NVAYESSPATSQMEEEVGKEFATLMGYKN--GWGHI--VADGSLANLEGLWYARNIKSLPFA  169 (608)
T ss_pred             CHHHHHHHHHHHHhCCC-CCccccCchHHHHHHHHHHHHHHHhCCCC--CCeEE--eCChHHHHHHHHHHHHHhhhccch
Confidence            345555443 3333332 24454455666777777777777666542  22235  8999999988754443321  1  


Q ss_pred             ----------------------------------------------CC------EEEEcCCCCcchHHHhhhCCC---Ce
Q 012647          177 ----------------------------------------------GA------KVLISSPTWGNHKNIFNDARV---PW  201 (459)
Q Consensus       177 ----------------------------------------------gd------~Vlv~~p~y~~~~~~~~~~G~---~v  201 (459)
                                                                    |.      +++++.-.+..+...+...|.   .+
T Consensus       170 ~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~v  249 (608)
T TIGR03811       170 MKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQV  249 (608)
T ss_pred             hhhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccE
Confidence                                                          00      577877778888889999998   48


Q ss_pred             eeeeeecCCCCCCCHHHHHHHHHc---CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH---HhcCC--eeEEeccCCC
Q 012647          202 SEYRYYDPKTVGLDFEGMIADIKA---APGGSFILLHGCAHNPTGIDPTPEQWEKIADVI---QEKNH--IPFFDVAYQG  273 (459)
Q Consensus       202 ~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~---~~~~~--~ii~Deay~~  273 (459)
                      +.||+  ++++++|++.|++.|++   ....+..|+-+.....+|.+   +++++|+++|   +++|+  ++++|.||.+
T Consensus       250 v~Vpv--D~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~Gai---Dpl~eI~~l~~~~~~~gl~~~lHVDAAyGG  324 (608)
T TIGR03811       250 IPVPV--DSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAV---DGIDKIVALRNKLMKEGIYFYLHVDAAYGG  324 (608)
T ss_pred             EEeec--CCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCccc---CCHHHHHHHHHHHHHcCCceeEeeeccccc
Confidence            89999  45789999999999864   22234556667789999999   8999999988   67887  6999999998


Q ss_pred             CC
Q 012647          274 FA  275 (459)
Q Consensus       274 ~~  275 (459)
                      +.
T Consensus       325 ~~  326 (608)
T TIGR03811       325 YG  326 (608)
T ss_pred             hh
Confidence            63

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.06  E-value=4.4e-08  Score=90.11  Aligned_cols=308  Identities=13%  Similarity=0.104  Sum_probs=178.6

Q ss_pred             cHHHHHHHHHHhhcCC---CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhC----
Q 012647          103 LDVVKKAENLMLERGE---NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF----  175 (459)
Q Consensus       103 ~~~v~~a~~~~~~~~~---~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~----  175 (459)
                      .|.+.+++++..+.-.   ..-|-  .-..++.+-+.+++.        -+-++.  ++-|.+|.+.+.++.+.+.    
T Consensus        77 hpki~~aLqeq~~kLtlssrafYn--d~~~~f~~~vt~lf~--------~~kvlp--mnTGaEa~Eta~KLaR~wgy~~K  144 (427)
T KOG1402|consen   77 HPKIIKALQEQADKLTLSSRAFYN--DVLGEFAEYVTKLFG--------YDKVLP--MNTGAEAVETACKLARKWGYRKK  144 (427)
T ss_pred             CHHHHHHHHHHHhHhhhhhHHHhh--hhHHHHHHHHHHhcC--------cceeee--cccchhHHHHHHHHHHHHHHhhc
Confidence            7889999888765310   11232  223466677777642        245666  6777999999988887653    


Q ss_pred             --CCC-EEEEc-CCCCcch-H---------HHhhhCC----CCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCC
Q 012647          176 --PGA-KVLIS-SPTWGNH-K---------NIFNDAR----VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (459)
Q Consensus       176 --~gd-~Vlv~-~p~y~~~-~---------~~~~~~G----~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~  237 (459)
                        |.+ .+++. .-+|.+- .         ...+.+|    ..+..+|+       -|.++|+.++++  +..+.+++-.
T Consensus       145 ~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y-------~d~eale~~l~~--~~vaaFivEP  215 (427)
T KOG1402|consen  145 NIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPY-------GDAEALEVALKS--PNVAAFIVEP  215 (427)
T ss_pred             cCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeecc-------CCHHHHHHHhcC--CCeeEEEeec
Confidence              423 33333 3333211 1         1122222    12344444       178999999987  4667777677


Q ss_pred             CCCCCCCCCC-HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCC-CCcce
Q 012647          238 AHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGA  315 (459)
Q Consensus       238 p~NPTG~~~s-~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~  315 (459)
                      -+-.-|++.+ +.-+++..++|.+|++++|.||+..+++-.+   ..+.+.. -+-.++++.   |.|.++ .| +.+..
T Consensus       216 IQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTG---k~la~d~-env~PDivi---lgKalS-GG~~Pvsa  287 (427)
T KOG1402|consen  216 IQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTG---KLLACDY-ENVRPDIVI---LGKALS-GGVYPVSA  287 (427)
T ss_pred             cccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccC---cEEEeeh-hhcCCCeEE---Eecccc-CCeeeeEE
Confidence            7888897654 5569999999999999999999988877432   2222211 122334443   568776 44 33444


Q ss_pred             EEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--
Q 012647          316 MNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS--  393 (459)
Q Consensus       316 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~--  393 (459)
                      +..   +.+    +...++......+.+-+.++.+++.+.|   ++..     -+...++.+.+-+.|++.|. ++..  
T Consensus       288 vl~---~~~----im~~~~pgeHgsTyggNpLg~~vaiAal---evi~-----eekL~era~~lG~~l~~~L~-~l~~~~  351 (427)
T KOG1402|consen  288 VLA---DDD----IMLNIKPGEHGSTYGGNPLGCAVAIAAL---EVIV-----EEKLVERAAKLGEILRDQLN-KLQKKF  351 (427)
T ss_pred             EEe---cHH----HHhccCCCccccccCCChHHHHHHHHHH---HHHH-----HHHHHHHHHHHHHHHHHHHH-hccccc
Confidence            433   666    4444444333333344555555554443   2211     14566777778888888888 7642  


Q ss_pred             CCCcccccCCcceeeecCC-----C-HHH--HHHHHhcccEEEcCCC----cEEEc-cCChhhHHHHHHHHHHHHh
Q 012647          394 GKDWSFILRQIGMFSFTGL-----N-KAQ--SDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       394 ~~~~~~~~~~~g~f~~~~l-----~-~~~--~~~ll~~~gI~v~~gg----Ris~~-~~~~e~i~~~~~~l~~~~~  456 (459)
                      |+-++.+.. -|++.-+-+     + .+.  +-..+++.|+..-|-.    |++-. .++++++++.+++|.+.+.
T Consensus       352 p~~v~~VRG-rGl~~ai~i~~~~~~~~~aw~~cl~lk~~g~LAkptH~~IiRfaPPL~I~e~dl~eg~e~i~k~i~  426 (427)
T KOG1402|consen  352 PHVVKEVRG-RGLLNAIVINPSKTSGQDAWDVCLALKENGLLAKPTHGNIIRFAPPLVISEEDLREGIEAIEKTIA  426 (427)
T ss_pred             cchhheeec-cceEEEEEeccccccchhHHHHHHcccccccccCCCCCCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence            111122222 245433211     2 222  2244455688877753    77633 2389999999999998764

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=99.05  E-value=2.5e-07  Score=86.20  Aligned_cols=311  Identities=12%  Similarity=0.061  Sum_probs=184.2

Q ss_pred             CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHh---CCCCEEEEcCCCCcc-hHHHhh
Q 012647          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY---FPGAKVLISSPTWGN-HKNIFN  195 (459)
Q Consensus       120 ~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~---~~gd~Vlv~~p~y~~-~~~~~~  195 (459)
                      ..|.-..++..|++++.+.+.        -+.++.  |+-|.+|-++...++...   .||.+..+++..|+. .....+
T Consensus        73 EAYagsrs~~~L~~avkdifG--------fq~~iP--thQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~  142 (471)
T COG3033          73 EAYAGSRSYYALADAVKDIFG--------FQYTIP--THQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQ  142 (471)
T ss_pred             hhhcccccHHHHHHHHHHhcC--------ceeeee--ccCCccHHHHHHHHHhhhccccCCccccccccceecchhHHHH
Confidence            568888889999999998863        255666  788888777764443221   167777777766653 445566


Q ss_pred             hCCCCeeeeeeecCC--------CCCCCHHHHHHHHHcCCC--CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 012647          196 DARVPWSEYRYYDPK--------TVGLDFEGMIADIKAAPG--GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP  265 (459)
Q Consensus       196 ~~G~~v~~v~~~~~~--------~~~~d~e~l~~~i~~~~~--~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~i  265 (459)
                      ..|+.++-+++++..        -+.+|++.|+..|++...  .+.+++..+.|.-.|.-.|.+.++++.++|++|++.+
T Consensus       143 ~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipv  222 (471)
T COG3033         143 INGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPV  222 (471)
T ss_pred             hcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcE
Confidence            788888877764322        235799999999988432  3344444445666799999999999999999999999


Q ss_pred             EEeccCC-CCCCC----CCCCChhHHHHHHhcC--CeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhh--
Q 012647          266 FFDVAYQ-GFASG----SLDNDASSVRLFATRG--MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRL--  336 (459)
Q Consensus       266 i~Deay~-~~~~~----~~~~~~~~~~~~~~~~--~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~--  336 (459)
                      +.|.+-. +-.|.    ......|++.....+.  -.+-+.-|..|.- +.-  +|.+.+ ..++...+-........  
T Consensus       223 v~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~-lvn--mGGfl~-~~D~~~fDvy~~~~~~~V~  298 (471)
T COG3033         223 VMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDG-LVN--MGGFLC-FKDDSFFDVYEECRTLVVV  298 (471)
T ss_pred             EeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeeccccc-eec--cccEEE-ecCccHHHHHHHHHhheEe
Confidence            9998731 11110    1112345555443211  0122334777763 222  455533 23332211122111111  


Q ss_pred             cc--ccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC--
Q 012647          337 AR--PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--  412 (459)
Q Consensus       337 ~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l--  412 (459)
                      ..  .++++...-...+.+.-|.+. ...       ...++--+..++|.+.|. +.|    +.++.|.||--+|++.  
T Consensus       299 ~eG~~tYGgl~GrdmealAvGL~e~-~~~-------~yl~~Rv~Qv~YL~~~l~-~~G----Vpi~~paGGHavfvda~~  365 (471)
T COG3033         299 QEGFPTYGGLAGRDMEALAVGLREG-VNF-------DYLAHRVAQVQYLADGLE-EAG----VPIVQPAGGHAVFVDAGK  365 (471)
T ss_pred             eccccccCcccchhHHHHHHHHHHh-cCc-------HHHHHHHHHHHHHHHHHH-hcC----CeeEecCCCceEEeehhh
Confidence            11  122233332222222222211 111       111222335678899999 888    4677888886666642  


Q ss_pred             -----------CHHHHHHHHhcccEEEcCCC---------------------cEEEc--cCChhhHHHHHHHHHHHHhh
Q 012647          413 -----------NKAQSDNMTNKWHVYMTKDG---------------------RISLA--GLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       413 -----------~~~~~~~ll~~~gI~v~~gg---------------------Ris~~--~~~~e~i~~~~~~l~~~~~~  457 (459)
                                 ...++-.|.++.||-.+.-|                     |+++.  .++.+.++.++++++++.++
T Consensus       366 ~lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~  444 (471)
T COG3033         366 FLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKEN  444 (471)
T ss_pred             hcCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHhc
Confidence                       12445677788899665432                     77764  34788999999999988764

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=98.97  E-value=1.1e-09  Score=93.10  Aligned_cols=65  Identities=18%  Similarity=0.302  Sum_probs=57.4

Q ss_pred             CCCCCCcccHHHHHHHHHHHhcCCC--CccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCc
Q 012647          120 KEYLPIEGLAAFNKVTAELLFGADN--SVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWG  188 (459)
Q Consensus       120 ~~Y~~~~g~~~lr~aia~~l~~~~~--~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~  188 (459)
                      ..|.+..|.++||+++|+|+.+.+|  ..+++++|++  |.|++++++++  +...+.|||.|++++|+|+
T Consensus        86 a~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivv--t~Ga~~al~~l--~~~l~dpGD~VlVp~P~Y~  152 (153)
T PLN02994         86 ALFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVL--SAGATAANEII--MFCIADPGDAFLVPTPYYA  152 (153)
T ss_pred             hcCCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEE--cCCHHHHHHHH--HHHHcCCCCEEEEeCCCCC
Confidence            3488889999999999999988877  6788999999  99999999998  4444789999999999996

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=98.95  E-value=1.3e-07  Score=91.04  Aligned_cols=275  Identities=14%  Similarity=0.118  Sum_probs=159.1

Q ss_pred             ecccchhHHHHHHHHHHHhC---CC---CEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCC
Q 012647          156 QGLSGTGSLRLAAALIERYF---PG---AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (459)
Q Consensus       156 ~t~ggt~a~~l~~~~~~~~~---~g---d~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~  229 (459)
                      .|.|+|+++.++-+-.....   .|   ..++++.-....+....+.++.++..||++ +.++.+|+..+.+.+++   +
T Consensus       143 ~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v~l~~V~~~-~~~~~~D~~k~~~~i~e---N  218 (491)
T KOG1383|consen  143 GTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEVELREVPLD-EGDYRVDPGKVVRMIDE---N  218 (491)
T ss_pred             cccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEEEEEeeecc-ccceEecHHHHHHHhcc---c
Confidence            38999999555422222111   12   356666666667777888889999999996 47899999999999997   8


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh-cCCeeEEeccCCCCCCC--CCCCChhHHHHHHhcCCeEE-EEEcCCc-
Q 012647          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQE-KNHIPFFDVAYQGFASG--SLDNDASSVRLFATRGMELL-VAQSYSK-  304 (459)
Q Consensus       230 ~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~-~~~~ii~Deay~~~~~~--~~~~~~~~~~~~~~~~~~~i-~~~S~SK-  304 (459)
                      ++.++...|+.|+|..   +++++|.++..+ +++.+.+|.+-.+|.-.  ......+.+     ..+.+- ...+-+| 
T Consensus       219 ti~lv~~~~~~p~G~~---e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdF-----r~p~V~Sisa~~HKY  290 (491)
T KOG1383|consen  219 TIMLVGSLPNFPTGEI---EDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDF-----RVPGVTSISADGHKY  290 (491)
T ss_pred             eEEEEEEcCCCCccch---hhHHHHHHHHHHHhCCceeecccCccccccccccCcccccc-----CCCCceeEeecccee
Confidence            9999988999999999   999999999999 99999999997777641  111111110     011111 1122333 


Q ss_pred             CcccCCCCcceEEEEeCChhHHH-HHH---HHHHhhccccccCCchH-----HHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012647          305 NLGLYAERIGAMNVVCSSSDLAA-RVK---SQLKRLARPMYSNPPVH-----GARIVANVVGNPALFDEWKAEMEMMAGR  375 (459)
Q Consensus       305 ~~~~~G~RiG~~~~v~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~L~~~~~~~~~~~~~~~~~~~  375 (459)
                      .+.++|  +||+  +-+++++.. .+.   +.+.......+.+-+..     +|.++..-|...+|        .+..++
T Consensus       291 Gl~~~G--~~~v--l~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY--------~~~~~~  358 (491)
T KOG1383|consen  291 GLAPAG--SSWV--LYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGY--------RENTQN  358 (491)
T ss_pred             eeeecC--cEEE--EEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHH--------HHHHHH
Confidence            355566  7998  445555210 000   00111111112222222     22222222333333        455566


Q ss_pred             HHHHHHHHHHHHhhccCCCCCcccc-cCCcceeeecC--CCHHHHHHHHhcccEEEcC----CC-cEEEccC--ChhhHH
Q 012647          376 IKNVRQKLFDSLSAKDKSGKDWSFI-LRQIGMFSFTG--LNKAQSDNMTNKWHVYMTK----DG-RISLAGL--SLAKCE  445 (459)
Q Consensus       376 ~~~~~~~l~~~L~~~~g~~~~~~~~-~~~~g~f~~~~--l~~~~~~~ll~~~gI~v~~----gg-Ris~~~~--~~e~i~  445 (459)
                      +.+....|.+.++ +.+   ++..+ .|.-.+.+|-.  ++.-.+..+|.++|-.+..    .+ -|++.-.  .++--+
T Consensus       359 ive~~~~l~egie-~i~---~i~i~gkp~vs~~~~~s~~~~i~elsd~l~~~GW~lnalq~P~a~Hi~vt~~~~~~~~A~  434 (491)
T KOG1383|consen  359 IVETARKLREGIE-NIK---GIKIVGKPLVSFILFGSNDVNIFELSDLLRKKGWILNALQFPAAIHICVTRVHAREDVAD  434 (491)
T ss_pred             HHHHHHHHHHhhh-ccc---cceecCCCcEEEEEccCCccchhhhhHHHHhcCcCccccCCCCceEEEEEeeeccHHHHH
Confidence            7777778888888 653   13333 34444444432  2322244555556775532    23 3443321  233346


Q ss_pred             HHHHHHHHHHhhc
Q 012647          446 YLADAIIDSYHNV  458 (459)
Q Consensus       446 ~~~~~l~~~~~~~  458 (459)
                      .++.-|+++++++
T Consensus       435 ~~v~Di~~~~~el  447 (491)
T KOG1383|consen  435 RFVADIRKVVEEL  447 (491)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777777764

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=98.91  E-value=6.9e-08  Score=87.68  Aligned_cols=319  Identities=14%  Similarity=0.136  Sum_probs=166.8

Q ss_pred             cHHHHHHHHHHhh-cCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEE
Q 012647          103 LDVVKKAENLMLE-RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL  181 (459)
Q Consensus       103 ~~~v~~a~~~~~~-~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vl  181 (459)
                      .|+|.++....+. ...+.++..    .++.+....+....-+    -+-+++  +++|++|+.++.++.+.+..-.-||
T Consensus        63 hp~VV~A~~kQmat~~tN~RFlh----d~lv~cA~~l~stlPe----Lsvc~F--~NSGSEANDLALRLAR~ftkhqDvI  132 (452)
T KOG1403|consen   63 HPEVVRAGAKQMATISTNNRFLH----DELVQCARTLTSTLPE----LSVCFF--VNSGSEANDLALRLARNFTKHQDVI  132 (452)
T ss_pred             CHHHHHHHHHHHhHhcccchhhH----HHHHHHHHHHhhcCCC----ceEEEE--ecCCchhhHHHHHHHHhhcccCceE
Confidence            5666666554442 222344532    2344433333322211    133556  9999999999988888887666677


Q ss_pred             EcCCCCcchHHHhh-------hCCC---Ceeeeeeec-CCCC---------------CCCHHHHHHHHHc---CCCCcEE
Q 012647          182 ISSPTWGNHKNIFN-------DARV---PWSEYRYYD-PKTV---------------GLDFEGMIADIKA---APGGSFI  232 (459)
Q Consensus       182 v~~p~y~~~~~~~~-------~~G~---~v~~v~~~~-~~~~---------------~~d~e~l~~~i~~---~~~~~~~  232 (459)
                      +.+-.|.++.....       ..|.   ++.++.+-+ ++.+               ..-.+.+++.+.+   ...+...
T Consensus       133 tldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAA  212 (452)
T KOG1403|consen  133 TLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAA  212 (452)
T ss_pred             EEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHH
Confidence            77877776643321       1121   112221110 0000               0112333333333   2223334


Q ss_pred             EEeCCCCCCCCCCCCHH-HHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCC
Q 012647          233 LLHGCAHNPTGIDPTPE-QWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE  311 (459)
Q Consensus       233 ii~~~p~NPTG~~~s~~-~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~  311 (459)
                      ++-.+-+.=-|.++++. -.+.+++..+.+|-+.|.||+.-+|+--  ....|+...+ +-.++++   ++.|-+| .|.
T Consensus       213 fiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRv--G~hyWafq~y-~fiPDIV---tmgKpmG-NGh  285 (452)
T KOG1403|consen  213 FIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRV--GSHYWAFQTY-NFIPDIV---TMGKPMG-NGH  285 (452)
T ss_pred             HHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhccccc--chhhhhhhhh-ccccchh---eecccCC-CCC
Confidence            44334444557666555 4899999999999999999997777643  2455654332 2223333   6889999 899


Q ss_pred             CcceEEEEeCChhHHHHHHHHHHhhcccccc-CCchHHHHH-HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012647          312 RIGAMNVVCSSSDLAARVKSQLKRLARPMYS-NPPVHGARI-VANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA  389 (459)
Q Consensus       312 RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  389 (459)
                      .++.++.   .++..+.+...-.. ...+++ +|.+.+... +...++++.           ..++.++.-++|...|+ 
T Consensus       286 PVa~Vat---tkeIA~Af~atgv~-YFNTyGGnPVsCAv~laVm~v~e~E~-----------Lq~ha~~vG~~L~~lL~-  349 (452)
T KOG1403|consen  286 PVAAVAT---TKEIAQAFHATGVE-YFNTYGGNPVSCAVGLAVMRVCEDEN-----------LQEHAQQVGEKLEVLLR-  349 (452)
T ss_pred             eeeEEec---cHHHHHHhccccce-ehhccCCCchhHHHHHHHHHHHhhhh-----------HHHHHHHHHHHHHHHHH-
Confidence            9999754   77744443321111 112232 333322221 233333332           23333333444444444 


Q ss_pred             ccCCCCCcccccCCcceeeecCC-----------CH----HHHHHHHhcccEEEcCCC------cEE-EccCChhhHHHH
Q 012647          390 KDKSGKDWSFILRQIGMFSFTGL-----------NK----AQSDNMTNKWHVYMTKDG------RIS-LAGLSLAKCEYL  447 (459)
Q Consensus       390 ~~g~~~~~~~~~~~~g~f~~~~l-----------~~----~~~~~ll~~~gI~v~~gg------Ris-~~~~~~e~i~~~  447 (459)
                      ++...  .+++..--|.-+|+|+           +.    ..+.+|.+.++|.+...|      .|- -.+.++++.+++
T Consensus       350 ~~k~k--h~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDGPh~NilKiKPPmCFneena~e~  427 (452)
T KOG1403|consen  350 RLKQK--HECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADGPHRNILKIKPPMCFNEENADEF  427 (452)
T ss_pred             HHhhh--ccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCCCCCceeecCCCcccChhhHHHH
Confidence            33211  2444443333344432           11    225577788899998887      221 112288999999


Q ss_pred             HHHHHHHHh
Q 012647          448 ADAIIDSYH  456 (459)
Q Consensus       448 ~~~l~~~~~  456 (459)
                      +..|.+++.
T Consensus       428 v~~ld~iLT  436 (452)
T KOG1403|consen  428 VLGLDEILT  436 (452)
T ss_pred             HHHHHHHHH
Confidence            988888774

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=98.90  E-value=5.3e-07  Score=86.60  Aligned_cols=234  Identities=17%  Similarity=0.099  Sum_probs=145.4

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHH-HHHHHHhcCCCCccccCceEEeecccchh
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNK-VTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~-aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      .+||++.-.-+...+....++++.+++...+.......|.-..|...-|- .+++.+.+-.+    .+.+++  ++..+.
T Consensus        21 ~viN~~G~v~~t~lG~s~~~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~~~~~----aea~~i--vnnn~a   94 (395)
T COG1921          21 RVINAIGTVLMTNLGRSLYSPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLCGLTG----AEAAAI--VNNNAA   94 (395)
T ss_pred             hhhhhhhhheeccCCCccCCHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHhcccc----hhheee--ECCcHH
Confidence            45665543333344445558999999998886543345544444322222 34444433322    355666  677777


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcC-----CCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEE-eC
Q 012647          163 SLRLAAALIERYFPGAKVLISS-----PTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILL-HG  236 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~-----p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii-~~  236 (459)
                      ++.++   ...+.++.+|++..     ++.++...+++..|++++++-..    ..-...+++.+|.+   ++.+++ +-
T Consensus        95 AVll~---~~al~~~~EvVis~g~lV~gg~~~v~d~~~~aG~~l~EvG~t----n~t~~~d~~~AIne---~ta~llkV~  164 (395)
T COG1921          95 AVLLT---LNALAEGKEVVVSRGELVEGGAFRVPDIIRLAGAKLVEVGTT----NRTHLKDYELAINE---NTALLLKVH  164 (395)
T ss_pred             HHHHH---HhhhccCCeEEEEccccccCCCCChhHHHHHcCCEEEEeccc----CcCCHHHHHHHhcc---CCeeEEEEe
Confidence            77776   33455555666544     47778899999999999998653    34688999999997   565555 43


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceE
Q 012647          237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (459)
Q Consensus       237 ~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~  316 (459)
                      +.|.  |.. +.=..++++++|++||+++++|.+-.....     ..+.++.++.. +-+++++|-.|.++  |-+-|.+
T Consensus       165 s~~~--~f~-~~l~~~~l~~ia~~~~lpvivD~aSg~~v~-----~e~~l~~~la~-GaDLV~~SgdKllg--GPqaGii  233 (395)
T COG1921         165 SSNY--GFT-GMLSEEELVEIAHEKGLPVIVDLASGALVD-----KEPDLREALAL-GADLVSFSGDKLLG--GPQAGII  233 (395)
T ss_pred             eccc--ccc-ccccHHHHHHHHHHcCCCEEEecCCccccc-----cccchhHHHhc-CCCEEEEecchhcC--CCccceE
Confidence            3443  332 112355688999999999999999433321     12234444443 35688889999986  7778887


Q ss_pred             EEEeCChhHHHHHHHHHHhhccccccCCchHHH
Q 012647          317 NVVCSSSDLAARVKSQLKRLARPMYSNPPVHGA  349 (459)
Q Consensus       317 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (459)
                      ++   .+++++++.+.  .+.+.+-...+.++.
T Consensus       234 ~G---kKelI~~lq~~--~l~Ralrv~K~tla~  261 (395)
T COG1921         234 VG---KKELIEKLQSH--PLKRALRVDKETLAA  261 (395)
T ss_pred             ec---hHHHHHHHHhh--hhhhhhhcCcHhHHH
Confidence            66   88977666553  233344445555543

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=98.85  E-value=6e-07  Score=82.77  Aligned_cols=285  Identities=12%  Similarity=0.065  Sum_probs=167.9

Q ss_pred             HHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhC--CCCEEEEcCCC-Ccc----hHHHhhhCCCCee
Q 012647          130 AFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF--PGAKVLISSPT-WGN----HKNIFNDARVPWS  202 (459)
Q Consensus       130 ~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~--~gd~Vlv~~p~-y~~----~~~~~~~~G~~v~  202 (459)
                      .+-..+|-++...      +.++++  +.+.+--++-.  +.+.++  +|++||+++-. |+.    ....++..|..  
T Consensus        80 ~lgdklApLiGA~------~~Evvv--~dtts~nl~k~--L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~--  147 (407)
T COG3844          80 RLGDKLAPLIGAR------AGEVVV--TDTTSINLFKV--LAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIG--  147 (407)
T ss_pred             HHHHHhhhhhcCC------CCceEE--eCCcchHHHHH--HHHHhccCCCceEEeecCCCCCcchhhhcchhhhhccc--
Confidence            4556666666554      678877  55444333333  555555  68999998843 322    22233333322  


Q ss_pred             eeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCC
Q 012647          203 EYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDND  282 (459)
Q Consensus       203 ~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~  282 (459)
                       +.+    ...+.++++++++++   .+.+++++.+|.-||..   -++.+|-.+++++|++++.|-+++.-...     
T Consensus       148 -~~~----~~~~~P~~~~~~~~d---d~AvV~L~~V~y~TGql---~dm~aiT~~AH~~galv~wDLAHsaGavp-----  211 (407)
T COG3844         148 -YDL----EGVIAPRALEEAITD---DVAVVLLSHVNYKTGQL---LDMRAITALAHQHGALVGWDLAHSAGAVP-----  211 (407)
T ss_pred             -ccc----eeeeChHHHHHhhcc---ceEEEEeccccccccce---eeHHHHHHHHHhcCceEEeehhcccCCcc-----
Confidence             111    234567899999987   88899999999999999   56778999999999999999997655432     


Q ss_pred             hhHHHHHHhcCCeEEEEEcCCcCcc-cCCCCcceEEEEeCChhHHHHHHHHHH-------------------hhcccccc
Q 012647          283 ASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNVVCSSSDLAARVKSQLK-------------------RLARPMYS  342 (459)
Q Consensus       283 ~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~~~v~~~~~~~~~~~~~~~-------------------~~~~~~~~  342 (459)
                           ..+...+-++-+++-.|-+. -||- .+++.+   .+...++....+.                   ...+...+
T Consensus       212 -----~~Lh~~gaDfaigcsyKYLNgGPGa-pa~l~v---~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~g  282 (407)
T COG3844         212 -----VDLHAAGADFAIGCSYKYLNGGPGA-PAGLFV---APRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCG  282 (407)
T ss_pred             -----eeecccCCCeeeeeeceeccCCCCC-ceeEEe---ccccccccccccccccCCCCcchhhhccCcCccccceeeC
Confidence                 11223445677778888773 2443 555544   3332222211111                   11122233


Q ss_pred             CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC-----CcceeeecCCC-HHH
Q 012647          343 NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR-----QIGMFSFTGLN-KAQ  416 (459)
Q Consensus       343 ~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~-----~~g~f~~~~l~-~~~  416 (459)
                      +++.++..+....|.-   ..  +-.+.+.|++--.+.+++.+.++ ..-.-.+++...|     .|+-..+..-. .+.
T Consensus       283 t~~V~s~aal~~aLDi---fa--~~~i~~lR~kSlaLTd~fieLvE-a~~~~~~l~l~tPr~~~~rGsqvS~~hp~~~~V  356 (407)
T COG3844         283 TQPVLSLAALEGALDI---FA--DVDITELRKKSLALTDYFIELVE-ARCEYYGLTLVTPRAHEERGSQVSLYHPHGYQV  356 (407)
T ss_pred             CcchhhhHHHhhhhhh---hh--hcCHHHHHHhhhHHHHHHHHHHH-hccccCCcEEeccchhhhccceeeEecCcHHHH
Confidence            4444444444333321   11  12267777777778888888877 4311011344433     23333333223 344


Q ss_pred             HHHHHhcccEEEc--CCC--cEEEccC--ChhhHHHHHHHHHHHHhhc
Q 012647          417 SDNMTNKWHVYMT--KDG--RISLAGL--SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       417 ~~~ll~~~gI~v~--~gg--Ris~~~~--~~e~i~~~~~~l~~~~~~~  458 (459)
                      .+.|.+ +||...  +-+  |+.|+.+  +-+++-..++.|.++++++
T Consensus       357 ~qaLi~-rGVigD~R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~  403 (407)
T COG3844         357 MQALID-RGVIGDFREPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTL  403 (407)
T ss_pred             HHHHHH-cCccccccCCCeeeecCccceechhHHHHHHHHHHHHHHhh
Confidence            556666 699752  223  9988765  6789999999999999865

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=98.83  E-value=3e-06  Score=81.26  Aligned_cols=299  Identities=14%  Similarity=0.118  Sum_probs=173.1

Q ss_pred             CCCCC---CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhC--CC----CEEEEcCCCCcch
Q 012647          120 KEYLP---IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF--PG----AKVLISSPTWGNH  190 (459)
Q Consensus       120 ~~Y~~---~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~--~g----d~Vlv~~p~y~~~  190 (459)
                      +-|.|   .+|+.++-..+.+|+..--|.    +.|.+ |-+.|.++-..-..++..+.  .|    +.||||+..+...
T Consensus        96 HP~~pe~~vqG~l~li~~Lq~~L~~ITG~----DavsL-QP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTN  170 (496)
T COG1003          96 HPFQPEEQVQGYLELIYELQEWLKEITGM----DAVSL-QPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTN  170 (496)
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHhcCC----ceeec-cCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCC
Confidence            44555   457777777777887654442    44444 44555555554333344332  33    6899999999988


Q ss_pred             HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEecc
Q 012647          191 KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVA  270 (459)
Q Consensus       191 ~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Dea  270 (459)
                      ...+..+|.+|+.|+.  ++++.+|+++|++++.+   ++..++++|||. -|+.  .+.++||+++.+++|..+..|.|
T Consensus       171 PASAam~G~~VV~V~~--~~~G~VDlddLk~k~~~---~~AalMiTnPsT-~GvF--E~~I~ei~~ivH~~Gg~vY~DGA  242 (496)
T COG1003         171 PASAAMAGFKVVVVKC--DENGNVDLDDLRAKAED---NLAALMITNPST-LGVF--EEDIREICEIVHEAGGQVYYDGA  242 (496)
T ss_pred             hhhHhhcCceEEEEec--CCCCCccHHHHHHHhcc---ceeEEEeccCcc-cccc--hhhHHHHHHHHHHcCCEEEecCc
Confidence            8899999999999999  45678999999999986   788888877763 3554  57799999999999999999998


Q ss_pred             CCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc----CCCCcceEEEEeCChhHHHHHHHHH-----Hh------
Q 012647          271 YQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL----YAERIGAMNVVCSSSDLAARVKSQL-----KR------  335 (459)
Q Consensus       271 y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~----~G~RiG~~~~v~~~~~~~~~~~~~~-----~~------  335 (459)
                      --.-..+ .  ..+      .+.+-+++=.-++|+|+.    .|-..|=+.+   ...+...+-.-.     ..      
T Consensus       243 NlNA~vG-~--~rP------Gd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgV---k~~L~pfLP~p~~~~~~~~y~~~~~  310 (496)
T COG1003         243 NLNAIVG-L--ARP------GDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGV---KAHLAPFLPGPVVYHDVGEYRLDYD  310 (496)
T ss_pred             chhhhhc-c--ccc------cccccceEEeecccccccCCCCCCCCCCceeh---HhhccccCCCCcccCCCccccccCC
Confidence            3221111 0  000      112223333467888743    2344565543   233111111100     00      


Q ss_pred             ------hccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccc-ccCC---cc
Q 012647          336 ------LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF-ILRQ---IG  405 (459)
Q Consensus       336 ------~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~~---~g  405 (459)
                            .....+++.+. ...+-..++.-+      .+.+++.-+..--+.+|+...|+ ..     +++ +.+.   ..
T Consensus       311 ~~~s~g~~~a~~Gs~~i-l~~a~~YI~~mG------~~GL~~ase~AvLNANYia~rL~-~~-----y~~~y~~~~~~~H  377 (496)
T COG1003         311 GKKSIGVSAAPYGSASI-LPIAWAYIRMMG------ADGLKQASEVAVLNANYIARRLK-GY-----YPVPYTGENRVAH  377 (496)
T ss_pred             CCccceeeccccCcchH-HHHHHHHHHHHh------HHHHHHHHHHHHHhHHHHHHHhh-hc-----CccccCCCCccee
Confidence                  00111112222 112222222211      24456666666678889999998 43     122 1111   11


Q ss_pred             eeee--------cCCCH-HHHHHHHhcccEEE--------cCCC-cEEEc-cCChhhHHHHHHHHHHHHhh
Q 012647          406 MFSF--------TGLNK-AQSDNMTNKWHVYM--------TKDG-RISLA-GLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       406 ~f~~--------~~l~~-~~~~~ll~~~gI~v--------~~gg-Ris~~-~~~~e~i~~~~~~l~~~~~~  457 (459)
                      =|++        .|++. +.+.+|++ +|+.-        ++|. -|=.+ ..+.+++|++++++.++.++
T Consensus       378 E~ild~r~l~~~~Gv~~~DvAKrLlD-~GfHaPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~E  447 (496)
T COG1003         378 ECILDARPLKKETGVRALDVAKRLLD-YGFHAPTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREE  447 (496)
T ss_pred             EEEeechHhHhhcCCcHHHHHHHHHh-cCCCCCcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHH
Confidence            1332        14444 55778888 68853        2222 22222 12668999999999988765

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=2.4e-07  Score=87.33  Aligned_cols=324  Identities=15%  Similarity=0.098  Sum_probs=181.1

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhc-CC-----CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GE-----NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~-----~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (459)
                      +.+++||+..+++.-.+    .+++++.....+.. +.     ..-|+...-...+.+.||+++..       ++.|+. 
T Consensus        93 G~~~~N~aS~NfL~l~~----~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G~-------E~aivY-  160 (467)
T KOG1358|consen   93 GKDVLNFASANFLGLIE----NEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMGT-------EDAIVY-  160 (467)
T ss_pred             Cceeecccchhhhhhcc----cHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhCC-------cceeee-
Confidence            45788888887643222    46666666655533 11     12377777777899999999755       456655 


Q ss_pred             ecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC-------CC
Q 012647          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA-------PG  228 (459)
Q Consensus       156 ~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~-------~~  228 (459)
                        +-|=.++..+  +-+....||.|.+.+-.-....+-++...-.+.+...+       |.+.++..+.+.       ++
T Consensus       161 --s~gF~ti~S~--ipafsKrGDIi~~de~~nfaIq~GlqlSRS~i~~Fkhn-------dm~~lerll~E~~~~~~K~~k  229 (467)
T KOG1358|consen  161 --SYGFSTIESA--IPAFSKRGDIIFVDEAVNFAIQKGLQLSRSTISYFKHN-------DMEDLERLLPEQEDEDQKNPK  229 (467)
T ss_pred             --ccccchhhhc--chhhhccCcEEEEehhhhHHHHHHHhhhhheeEEecCC-------CHHHHHHhccCcchhhhhccc
Confidence              3333333333  23334589999998877666666677666677776552       556665554431       11


Q ss_pred             --C-cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH--HHhcCCeEEEEEcCC
Q 012647          229 --G-SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL--FATRGMELLVAQSYS  303 (459)
Q Consensus       229 --~-~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~S~S  303 (459)
                        . .+.+++-.---+||.+   .++.+|+++..+|...+|.||.|+--..+.   ....+..  -++..+.+++++|++
T Consensus       230 ~~~~Rrfiv~EGl~~N~g~i---~pl~~iv~lk~Kyk~RvildEs~SfG~lg~---~GrGvteH~~v~~~~iDiv~~sm~  303 (467)
T KOG1358|consen  230 KALTRRFIVVEGLYANTGDI---CPLPEIVKLKNKYKFRVILDESLSFGVLGK---TGRGVTEHFGVPITDIDIVTASME  303 (467)
T ss_pred             cccceEEEEEEeeccCCCcc---cccHHHHHHHhhheEEEEEecccccccccc---cCccccccCCCCccceeeeeeccc
Confidence              2 2344455557789999   778889999999999999999976443321   1111111  122345678899999


Q ss_pred             cCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccc--ccc-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012647          304 KNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARP--MYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR  380 (459)
Q Consensus       304 K~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~  380 (459)
                      -+++-.|   |++.+   +.-    +....+ +...  .++ +.|.....++...+.-.    .|.   ..+.+.++...
T Consensus       304 ~alas~G---gFc~G---~~~----i~~hQr-LSg~~Y~fSAslPp~la~aa~~ai~i~----~~~---p~~~~~L~~k~  365 (467)
T KOG1358|consen  304 TALASGG---GFCAG---KSF----IADHQR-LSGSGYCFSASLPPYLAGAAIKAILIE----EWN---PEIVQPLRAKV  365 (467)
T ss_pred             ccccccC---ceeec---cee----eEeeee-ccccceeeeccCchhhhhhHHHHHHHH----hhC---cchhhhhhccc
Confidence            9888655   77644   332    222111 1111  111 22222223332222111    111   22344444444


Q ss_pred             HHHHHHHhhccCCCCCcccccCCcceeeecCC-----C--------HHHHHHHHhcccEEEcCC-------------C-c
Q 012647          381 QKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----N--------KAQSDNMTNKWHVYMTKD-------------G-R  433 (459)
Q Consensus       381 ~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-----~--------~~~~~~ll~~~gI~v~~g-------------g-R  433 (459)
                      ..+.+.|+ ...   .+.+....-.....+.+     +        .+.+++.+.+ |+.++..             + |
T Consensus       366 ~~~H~~l~-~~s---~~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~-~~ll~~a~~~~~~e~~~~~pSir  440 (467)
T KOG1358|consen  366 AKFHAALS-SNS---GFIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAE-GVLLTRAKYLEKLERCPIPPSIR  440 (467)
T ss_pred             cccchhhh-cCC---ceEEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhh-cceehhhhhhhhcccCCCCCcEE
Confidence            55555555 321   02222221121111111     1        2345566666 7777553             1 9


Q ss_pred             EEEcc-CChhhHHHHHHHHHHHHhh
Q 012647          434 ISLAG-LSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       434 is~~~-~~~e~i~~~~~~l~~~~~~  457 (459)
                      |++.. .++||++++++.|+++...
T Consensus       441 i~~~a~~seeel~ra~~~ik~~~~~  465 (467)
T KOG1358|consen  441 ICVSAGMSEEELERAAELIKEVASA  465 (467)
T ss_pred             EEEeCCCCHHHHHHHHHHHHHHHHh
Confidence            98865 4999999999999987654

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=98.78  E-value=7e-06  Score=76.92  Aligned_cols=330  Identities=13%  Similarity=0.104  Sum_probs=181.7

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCC--cccHHHHHH---HHHH-HhcCCCCccccCce-EEee
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI--EGLAAFNKV---TAEL-LFGADNSVLKEQRV-ATVQ  156 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~--~g~~~lr~a---ia~~-l~~~~~~~~~~~~i-~~~~  156 (459)
                      .-|.|-..++     +  .+..|.+++-..+.+....+|+-.  .|-.++...   +++. ....++.+  |+.- +-+|
T Consensus        41 ~gieLIaSEN-----F--ts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~RALeaF~ld--p~kWGVNVQ  111 (477)
T KOG2467|consen   41 RGIELIASEN-----F--TSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQKRALEAFGLD--PEKWGVNVQ  111 (477)
T ss_pred             cceeEeeccc-----c--hHHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHHHHHHHhCCC--HHHCceeec
Confidence            4567766554     2  278899999888865444444221  111222222   2211 11223332  4322 2356


Q ss_pred             cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcch---HHHh--hhCC-----CCeeeeeeecCCCCCCCHHHHHHHHHcC
Q 012647          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH---KNIF--NDAR-----VPWSEYRYYDPKTVGLDFEGMIADIKAA  226 (459)
Q Consensus       157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~---~~~~--~~~G-----~~v~~v~~~~~~~~~~d~e~l~~~i~~~  226 (459)
                      ..+|+.|+..+  .-+.+.|+|+++-.+--..+|   ....  +..-     ++-.++.++ +.++-+|.|.|++.....
T Consensus       112 p~SGSPANfav--Ytall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~-~~TG~IDYD~Le~~A~~f  188 (477)
T KOG2467|consen  112 PYSGSPANFAV--YTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVD-PSTGYIDYDKLEKTATLF  188 (477)
T ss_pred             cCCCCchhhHH--HhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeC-CCCCceehHHHHHHHHhc
Confidence            78899999887  344578999998766322222   1111  1111     122234443 567889999999887764


Q ss_pred             CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC
Q 012647          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (459)
Q Consensus       227 ~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (459)
                        +++++|-..-..+  ..   -+..++.++|.+.|.+++.|.++. ++...+.-.++        -...+|+..+-+|.
T Consensus       189 --rPk~iiaG~SaY~--R~---~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsP--------Fey~DiVTTTTHKs  253 (477)
T KOG2467|consen  189 --RPKLIIAGTSAYS--RL---IDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSP--------FEYCDIVTTTTHKS  253 (477)
T ss_pred             --CCcEEEeccccch--hh---ccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCc--------ccccceeecccccc
Confidence              6677774222222  22   235566777788899999999963 23322111110        11257888899998


Q ss_pred             cccCCCCcceEEEEeCChh--------HHHHHHHHHHhh----ccccccCCchHHHHHH-HHHhCChhhHHHHHHHHHHH
Q 012647          306 LGLYAERIGAMNVVCSSSD--------LAARVKSQLKRL----ARPMYSNPPVHGARIV-ANVVGNPALFDEWKAEMEMM  372 (459)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~--------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~L~~~~~~~~~~~~~~~~  372 (459)
                      +  -|-|-|-+...-+.+.        ..-.+.+.+...    .++.. +...++..++ ..--..++|        ++.
T Consensus       254 L--RGPRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGP-HNhtIaalAvALkQa~tpef--------k~Y  322 (477)
T KOG2467|consen  254 L--RGPRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGP-HNHTIAALAVALKQAMTPEF--------KEY  322 (477)
T ss_pred             c--cCCcceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCC-CcchHHHHHHHHHhhCCHHH--------HHH
Confidence            6  5777777654332111        111122222211    11111 2233333222 112234444        566


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCcccccCCc--ceeee----cCCCHHHHHHHHhcccEE------------EcCCC-c
Q 012647          373 AGRIKNVRQKLFDSLSAKDKSGKDWSFILRQI--GMFSF----TGLNKAQSDNMTNKWHVY------------MTKDG-R  433 (459)
Q Consensus       373 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~--g~f~~----~~l~~~~~~~ll~~~gI~------------v~~gg-R  433 (459)
                      .++..++.+.|.+.|. +.|    ++.+....  .+.+|    .|++...+++.++..+|.            +.||| |
T Consensus       323 q~qV~~Nakala~~l~-~~G----y~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiR  397 (477)
T KOG2467|consen  323 QKQVLKNAKALASALI-SRG----YKLVTGGTDNHLVLVDLRPKGVDGARVEKVLELCHIALNKNTVPGDKSALSPGGIR  397 (477)
T ss_pred             HHHHHHHHHHHHHHHH-HcC----ceEecCCccceEEEEeccccCCchHHHHHHHHHhhhhhcCCcCCCCccccCCCcee
Confidence            6777778888888888 887    45553322  23344    266888888888877774            34556 8


Q ss_pred             EEEc-----cCChhhHHHHHHHHHHHHh
Q 012647          434 ISLA-----GLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       434 is~~-----~~~~e~i~~~~~~l~~~~~  456 (459)
                      |.-.     +.-+++++++.+-|.++++
T Consensus       398 iGtPAmTsRG~~e~df~~v~~fi~~av~  425 (477)
T KOG2467|consen  398 IGTPAMTSRGFGEEDFEKVADFIDRAVK  425 (477)
T ss_pred             ccchhhcccCccHHHHHHHHHHHHHHHH
Confidence            8522     3367889888888887764

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=98.70  E-value=2.4e-06  Score=82.10  Aligned_cols=282  Identities=14%  Similarity=0.051  Sum_probs=139.0

Q ss_pred             CceEEeecccchhHHH-HHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeec-CCCCCCCHHHHHHHHHcCC
Q 012647          150 QRVATVQGLSGTGSLR-LAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD-PKTVGLDFEGMIADIKAAP  227 (459)
Q Consensus       150 ~~i~~~~t~ggt~a~~-l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~-~~~~~~d~e~l~~~i~~~~  227 (459)
                      +..++  ++.+|+-.- +....++.-..++.|+.+.-..-.-...+..+|.+++.||... ++....|++.+++.+++..
T Consensus        75 ~~~~~--vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~G  152 (389)
T PF05889_consen   75 KSCFV--VPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERAGLEPVVVENVLEGDELITDLEAIEAKIEELG  152 (389)
T ss_dssp             CEEEE--ESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHTT-EEEEE-EEEETTEEEEHHHHHHHHHHHHC
T ss_pred             cceEE--EecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhcCCeEEEeeccCCCCeeeccHHHHHHHHHHhC
Confidence            33444  566655333 3311222113568888877544333345677899999999542 3334557888999887654


Q ss_pred             CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH----HhcCCeEEEEEcCC
Q 012647          228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF----ATRGMELLVAQSYS  303 (459)
Q Consensus       228 ~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~S~S  303 (459)
                      +...+.++++++---|..  ++++++|+++|++||+..|+..||.--.       . .+...    ...+--.+++.|.-
T Consensus       153 ~~~iLcvltttscfapr~--~D~i~~IakiC~~~~IPhlvNnAYgvQ~-------~-~~~~~i~~a~~~GRvda~vqS~d  222 (389)
T PF05889_consen  153 ADNILCVLTTTSCFAPRL--PDDIEEIAKICKEYDIPHLVNNAYGVQS-------S-KCMHLIQQAWRVGRVDAFVQSTD  222 (389)
T ss_dssp             GGGEEEEEEESSTTTTB------HHHHHHHHHHHT--EEEEGTTTTT--------H-HHHHHHHHHHHHSTCSEEEEEHH
T ss_pred             CCCeEEEEEecCccCCCC--CccHHHHHHHHHHcCCceEEccchhhhH-------H-HHHHHHHHHHhcCCcceeeeecC
Confidence            454555554433223333  1569999999999999999999976321       1 11122    22334567889999


Q ss_pred             cCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012647          304 KNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKL  383 (459)
Q Consensus       304 K~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l  383 (459)
                      |+|-.|   +|-.++-+.++..+..+.+.+..    --+..|..-..+-...|.-..    |..-+.++.+.+....+.+
T Consensus       223 kNF~VP---vGgai~As~~~~~i~~vs~~YpG----Ras~sp~ld~~itLl~LG~~g----~~~ll~~r~~~f~~l~erl  291 (389)
T PF05889_consen  223 KNFMVP---VGGAIMASFDPSGILAVSKEYPG----RASASPSLDLFITLLSLGCTG----YGALLKERKASFPYLKERL  291 (389)
T ss_dssp             HHHCEE---SSHEEEEESSHHHHHHHHHTSHS----HBTSHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEec---CCCcEEEecCHHHHHHHHHHhhh----hhhcccchHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHH
Confidence            999644   45554445666644444332221    111223322222222222222    3344445555444444444


Q ss_pred             HHHHhhccCCCCCcccccCCcceeeec-CC---C---HHHHHHHHhcccEE----EcCCC-------------cEEE---
Q 012647          384 FDSLSAKDKSGKDWSFILRQIGMFSFT-GL---N---KAQSDNMTNKWHVY----MTKDG-------------RISL---  436 (459)
Q Consensus       384 ~~~L~~~~g~~~~~~~~~~~~g~f~~~-~l---~---~~~~~~ll~~~gI~----v~~gg-------------Ris~---  436 (459)
                      .+.-+ +.+. .-.+....+..+.+-+ .+   +   .-++-..|...||.    +.+++             -+.+   
T Consensus       292 ~~~ae-e~~e-~ll~~p~N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~Asa  369 (389)
T PF05889_consen  292 KKWAE-EVGE-RLLETPRNHISMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAASA  369 (389)
T ss_dssp             HHHHH-HTTE-EBSSSTT-SSEEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEEEE-
T ss_pred             HHHHH-Hhhh-hhcCCCCCCeeEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHHHHH
Confidence            44333 3330 0011112222232222 22   1   23444444445773    44443             2222   


Q ss_pred             ccCChhhHHHHHHHHHHHHh
Q 012647          437 AGLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       437 ~~~~~e~i~~~~~~l~~~~~  456 (459)
                      -+++.||++.++++|+++++
T Consensus       370 iG~~~eevd~~v~rL~k~i~  389 (389)
T PF05889_consen  370 IGMTREEVDYFVKRLDKIIK  389 (389)
T ss_dssp             TT--HHHHHHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHhC
Confidence            34599999999999999875

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=98.67  E-value=6.2e-06  Score=88.60  Aligned_cols=302  Identities=13%  Similarity=0.126  Sum_probs=167.4

Q ss_pred             eecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCc-----c----cHHHHHHHHHHHhcCCCCccccCceEEeec
Q 012647           87 NLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIE-----G----LAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (459)
Q Consensus        87 ~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~-----g----~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (459)
                      -++.|.|    .. .+|+.|.+.+.+.  ..+...|.|.+     |    +-++.+.++++..    .+  ..|..+  .
T Consensus        68 fig~G~y----~~-~~p~~i~r~v~~~--p~~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLtG----m~--~aNaSl--~  132 (939)
T TIGR00461        68 YIGMGYY----GT-ILPPVIQRNLLEN--PGWYTAYTPYQPEISQGRLEALLNFQTVVSDLTG----LP--VANASL--L  132 (939)
T ss_pred             cCCCCcC----CC-cCChHHHHHHHhC--chhhhcCCCCChhhhhHHHHHHHHHHHHHHHHHC----CC--hhhhhc--c
Confidence            3466776    22 2477777555442  12235566633     2    3456666777642    21  334444  5


Q ss_pred             ccchhHHHHHHHHHHHhC--CCCEEEEcCCCCcchHHHhh----hCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcE
Q 012647          158 LSGTGSLRLAAALIERYF--PGAKVLISSPTWGNHKNIFN----DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (459)
Q Consensus       158 ~ggt~a~~l~~~~~~~~~--~gd~Vlv~~p~y~~~~~~~~----~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~  231 (459)
                      .++|.+.+.+.... ...  ++++|+|++-.++.+..+++    ..|.+++.++.          ++|++.+     .+.
T Consensus       133 d~atA~aEa~~~a~-~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~~----------~~l~~~~-----~~~  196 (939)
T TIGR00461       133 DEGTAAAEAMALSF-NVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVDC----------SDIKKAV-----DVF  196 (939)
T ss_pred             chhhHHHHHHHHHH-HhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEcH----------HHHhhcC-----CEE
Confidence            67777777653222 122  34899999999988876665    67888877643          3444433     245


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc---
Q 012647          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL---  308 (459)
Q Consensus       232 ~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~---  308 (459)
                      .+++.+| |-.|.+   +++++|+++++++|.+++++.--..+..-    ..      ..+.+-++++++ +|.||.   
T Consensus       197 ~v~~q~P-n~~G~i---ed~~~i~~~~h~~gal~~~~ad~~al~ll----~~------Pge~GaDi~vg~-~q~fg~p~g  261 (939)
T TIGR00461       197 GCLLQYP-ATDGSI---LDYKQLIDALHSHKSLVSVAADLMALTLL----TP------PGHYGADIVLGS-SQRFGVPMG  261 (939)
T ss_pred             EEEEECC-CCCeEE---ecHHHHHHHHHHcCCEEEEEechHHhCCc----CC------HHHcCCcEEeeC-CCccCCCCC
Confidence            6665555 457999   78999999999999999985432222210    01      122234455443 454443   


Q ss_pred             -CCCCcceEEEEeCChhHHHHHHHHHHh--------------------hccccccCCchH-HHH-----HHHHH-hCChh
Q 012647          309 -YAERIGAMNVVCSSSDLAARVKSQLKR--------------------LARPMYSNPPVH-GAR-----IVANV-VGNPA  360 (459)
Q Consensus       309 -~G~RiG~~~~v~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~-~~~-----~~~~~-L~~~~  360 (459)
                       .|--.|++.+   .+++...+...+..                    .++..-...+.. +|.     ++..+ +..  
T Consensus       262 ~GGP~aG~~a~---~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G--  336 (939)
T TIGR00461       262 YGGPHAAFFAV---KDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYHG--  336 (939)
T ss_pred             CCCCceeeeee---cHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHHHC--
Confidence             2333677755   43422211110000                    000000011111 111     11111 111  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCccee--eecC---CCHH-HHHHHHhcccEEEcCCC--
Q 012647          361 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF--SFTG---LNKA-QSDNMTNKWHVYMTKDG--  432 (459)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f--~~~~---l~~~-~~~~ll~~~gI~v~~gg--  432 (459)
                           .+.++++.++...+..++.+.|. +.|    ++...+  .||  +-+.   .+.+ ..+++++ +||.+....  
T Consensus       337 -----~~GL~~iA~~~~~~a~~l~~~L~-~~G----~~~~~~--~fF~~~~v~~~~~~~~~i~~~~~~-~gi~l~~~~~~  403 (939)
T TIGR00461       337 -----PKGLKNIARRIHSLTSILANGLE-NDP----HELINK--TWFDTLTVKVGNGISSELLKAAEE-FNINLRAVDTT  403 (939)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHH-hCC----CcccCC--CccceEEEEeCCCCHHHHHHHHHH-CCCeeeecCCC
Confidence                 35578888999999999999999 887    454433  344  1122   2334 4556665 599887542  


Q ss_pred             --cEEEccC-ChhhHHHHHHHHH
Q 012647          433 --RISLAGL-SLAKCEYLADAII  452 (459)
Q Consensus       433 --Ris~~~~-~~e~i~~~~~~l~  452 (459)
                        ++|+... ++++|+.+++.+.
T Consensus       404 ~i~~s~~E~~t~~di~~l~~~~~  426 (939)
T TIGR00461       404 TVGIALDETTTKADVENLLKVFD  426 (939)
T ss_pred             EEEEEeecCCCHHHHHHHHHHhc
Confidence              7777655 7889999999884

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=98.62  E-value=6.2e-08  Score=92.16  Aligned_cols=261  Identities=16%  Similarity=0.142  Sum_probs=45.3

Q ss_pred             CccCcHHHHHHHHHHhhcCCCCCCCCCccc-----HHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH
Q 012647           99 QPYVLDVVKKAENLMLERGENKEYLPIEGL-----AAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER  173 (459)
Q Consensus        99 ~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~-----~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~  173 (459)
                      ..++++++.+++.+........+|.-..|-     ..+.+.++... +       .+.-++  +++...|+.++   +..
T Consensus        15 Rs~l~~~a~~a~~~~a~~Y~nLE~dl~~G~Rg~R~~~v~~ll~~lt-g-------AeaA~V--vNnnaAAv~L~---l~~   81 (367)
T PF03841_consen   15 RSPLSEEAIEAVAEVASGYSNLEYDLETGKRGSRYAHVEELLCELT-G-------AEAALV--VNNNAAAVLLA---LNT   81 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccc-c-------cccccc--ccccccccccc---ccc
Confidence            344578888888776643222344322221     22333333332 2       244445  57777777775   445


Q ss_pred             hCCCCEEEEcCCCC------cchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC--CCC
Q 012647          174 YFPGAKVLISSPTW------GNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT--GID  245 (459)
Q Consensus       174 ~~~gd~Vlv~~p~y------~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT--G~~  245 (459)
                      +.+|.+|++..---      +....+++..|+++++|-..    -.-.+++++++|++   +|.+++-.+++|-.  |..
T Consensus        82 la~~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGtt----N~t~~~Dye~AI~e---~Ta~ll~Vh~Sn~~i~GFt  154 (367)
T PF03841_consen   82 LAKGKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTT----NRTHLSDYEKAITE---NTAALLKVHTSNFRIQGFT  154 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccc----cccccccccccccc---ccccccccccccccccccc
Confidence            66788888876322      23566788899999999773    23467889999987   77777755666664  333


Q ss_pred             CCHHHHHHHHHHHHhcCCeeEEeccCCCCCC----CCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          246 PTPEQWEKIADVIQEKNHIPFFDVAYQGFAS----GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       246 ~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      =. -.++++++++++|++++++|.. ++...    .+. .+.+.+..++. ..-+++++|-.|.+|  |-..|.+++   
T Consensus       155 ~~-~~~~el~~la~~~~lp~i~Dlg-sG~l~dl~~~gl-~~Ep~v~~~~~-~GaDlV~fSGdKlLG--GPQaGiI~G---  225 (367)
T PF03841_consen  155 GE-VSLEELAELAKEHGLPVIVDLG-SGLLVDLSPYGL-PDEPTVQEYLA-AGADLVTFSGDKLLG--GPQAGIIVG---  225 (367)
T ss_dssp             -------HHHHHHHHHT--EEEE-T-THHHHHHHTT-----------CCC-CT-SEEEEETTSSSS--S-S-EEEEE---
T ss_pred             cc-ccHHHHHHHHhhcCCcEEEECC-CCCCcCcccccC-ccccHHHHHhh-cCCCEEEEECCCcCC--CCCeEEEEe---
Confidence            21 2588899999999999999998 41110    001 11223333333 345688999999997  444788766   


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHH--HHHhCChhhHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIV--ANVVGNPALFDE--WKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                      .+++++++++.  .+.|.+-..-..++...+  ..+++.....++  -.+-+.+..+.++++.+.|.+.|+ ..
T Consensus       226 kk~lI~~lk~~--pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L~~rA~~l~~~l~-~~  296 (367)
T PF03841_consen  226 KKELIEKLKKH--PLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEELRARAERLAAQLK-AA  296 (367)
T ss_dssp             EHHHHHHHHHH--HHTTT-B--HHHHHHHHHHHHH---------------------------------------
T ss_pred             CHHHHHHHhhC--CCcceEeeCHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccc-cc
Confidence            89977776543  233333222223222221  222221110000  012245556677777777877777 54

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=98.61  E-value=7.9e-06  Score=74.62  Aligned_cols=169  Identities=18%  Similarity=0.237  Sum_probs=114.8

Q ss_pred             CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCC-CcchHH----------H
Q 012647          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPT-WGNHKN----------I  193 (459)
Q Consensus       125 ~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~-y~~~~~----------~  193 (459)
                      .-|-+.|.+-.|+.+...       .-++=.|..+||.|+..+  ++..++|||+.+...-. |....+          .
T Consensus        64 D~GRdtLe~vyA~vf~aE-------~a~VRpq~isGTHAI~~a--Lfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gS  134 (416)
T COG4100          64 DLGRDTLERVYAQVFGAE-------AALVRPQIISGTHAIACA--LFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGS  134 (416)
T ss_pred             ccchhHHHHHHHHHhccc-------cceeeeeeecchhHHHHH--HHhccCCCCeEEEecCCcchhHHHHhccCCCCccc
Confidence            345566666666665442       334445678999999998  77789999987765432 322332          2


Q ss_pred             hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCC----CCCHHHHHHHHHHHHh--cCCeeEE
Q 012647          194 FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGI----DPTPEQWEKIADVIQE--KNHIPFF  267 (459)
Q Consensus       194 ~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~----~~s~~~l~~i~~l~~~--~~~~ii~  267 (459)
                      ++.+|.+..-+|+.  .++.+|.+.+.+++++   +++++.+   +--+|.    .++.+++++++++.++  .++++++
T Consensus       135 L~dfgi~Y~~v~Lt--~~gkiD~~~v~~~i~~---~tkli~I---QRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFV  206 (416)
T COG4100         135 LKDFGIKYKAVPLT--ADGKIDIQAVKTAISD---RTKLIGI---QRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFV  206 (416)
T ss_pred             HHHhCcceeecccc--cCCcccHHHHHHhcCc---cceEEEE---EeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEE
Confidence            44567778888884  4578999999999996   7887775   333443    3566899999999987  4899999


Q ss_pred             eccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCC-Cc-ceEEEEeCChh
Q 012647          268 DVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE-RI-GAMNVVCSSSD  324 (459)
Q Consensus       268 Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-Ri-G~~~~v~~~~~  324 (459)
                      |++|.+|....   .+..       -.-++..+|+-|+-| .|+ .. ||+.+   ..+
T Consensus       207 DNCYGEFvE~~---EPt~-------vGaDliAGSLIKNpG-GgiaktGGYiaG---k~~  251 (416)
T COG4100         207 DNCYGEFVEEK---EPTH-------VGADLIAGSLIKNPG-GGIAKTGGYIAG---KAE  251 (416)
T ss_pred             eccchhhhhcc---Cccc-------cchhhhccceeeCCC-Cceeeccceeec---hHH
Confidence            99999998431   1111       124688899999866 342 11 66544   655

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=98.55  E-value=1.2e-05  Score=79.29  Aligned_cols=307  Identities=15%  Similarity=0.150  Sum_probs=143.3

Q ss_pred             eecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCC-----Cccc----HHHHHHHHHHHhcCCCCccccCceEEeec
Q 012647           87 NLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP-----IEGL----AAFNKVTAELLFGADNSVLKEQRVATVQG  157 (459)
Q Consensus        87 ~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~-----~~g~----~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (459)
                      -++.|.|    .. .+|+.+.+.+...-  .+...|.|     .+|.    -++...++++. +   .++  -+.-+  -
T Consensus        69 fiG~G~y----~~-~~P~~i~~~i~~~~--ef~TaYtPYQpEisQG~Lq~lfe~Qs~i~eLT-G---mdv--aNaSl--y  133 (429)
T PF02347_consen   69 FIGAGSY----TH-YVPAVIDRNILSRP--EFYTAYTPYQPEISQGRLQALFEYQSMICELT-G---MDV--ANASL--Y  133 (429)
T ss_dssp             ---CTTT----------HHHHH-HHCCH--HCCCS-STTSGGGBHHHHHHHHHHHHHHHHHH-T---SSE--E-SEB--S
T ss_pred             ccccccc----Cc-eeChhhcCccccCh--hhhccCCCCCcHHHHHHHHHHHHHHHHHHHhh-C---CCc--cCCCC--C
Confidence            4566766    32 23555554222211  22345665     2332    45666666663 2   221  12222  4


Q ss_pred             ccchhHHHHHHHHHHHhC-CCCEEEEcCCCCcchHHHhh----hCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEE
Q 012647          158 LSGTGSLRLAAALIERYF-PGAKVLISSPTWGNHKNIFN----DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI  232 (459)
Q Consensus       158 ~ggt~a~~l~~~~~~~~~-~gd~Vlv~~p~y~~~~~~~~----~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~  232 (459)
                      .|+|..-+.+....+.-. .+++|+++.-.++.+...++    ..|.+++.+|.++  +...|        .   +.+..
T Consensus       134 d~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~--~~~~d--------~---~~~a~  200 (429)
T PF02347_consen  134 DGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDE--DGTTD--------D---DDTAA  200 (429)
T ss_dssp             SCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBT--TCSB---------S---TTEEE
T ss_pred             ChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccc--cCCcc--------c---cCeEE
Confidence            566666665532333222 34699999999998887554    5789999999853  33334        2   47888


Q ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccC---
Q 012647          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY---  309 (459)
Q Consensus       233 ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~---  309 (459)
                      +++.+|| -.|.+   +++++|+++++++|.++++ .+ -........  .+      .+.+-+|++++ +|.||.|   
T Consensus       201 v~vq~Pn-~~G~~---ed~~~i~~~~h~~gal~~~-~a-d~~aL~~l~--~P------ge~GADI~vg~-~Q~fg~p~~~  265 (429)
T PF02347_consen  201 VMVQNPN-TFGVF---EDIKEIADIAHAAGALVIV-GA-DPNALGGLK--SP------GEYGADIVVGE-HQTFGIPMGF  265 (429)
T ss_dssp             EEEESS--TTSB-----THHHHHHHHHHTT-EEEE-CG-GCCGCCTC----G------GGGT-SEEEEC-CTTTT---CC
T ss_pred             EEeecCC-CCceE---eeHHHHHHHHHHcCCEEEE-ec-CHHHHhCcC--Ch------hhcCccEEeeC-CCCCcccCCC
Confidence            8887776 45888   7799999999999999887 44 333332211  11      12234455666 7877543   


Q ss_pred             -CCCcceEEEEeCChhHHHHHHHH------------------------HHhhccccccCCc--hHHHHHHHHHhCChhhH
Q 012647          310 -AERIGAMNVVCSSSDLAARVKSQ------------------------LKRLARPMYSNPP--VHGARIVANVVGNPALF  362 (459)
Q Consensus       310 -G~RiG~~~~v~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~--~~~~~~~~~~L~~~~~~  362 (459)
                       |--.|++.+   .+++...+..+                        .++-+-....+.+  ..+..++..+.-.+   
T Consensus       266 GGP~~G~~a~---~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G---  339 (429)
T PF02347_consen  266 GGPGAGFFAV---REDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLG---  339 (429)
T ss_dssp             C-S--EEEEE----GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHH---
T ss_pred             CCCCeeeEEE---hhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhC---
Confidence             344677755   44422221111                        1111111111111  21222222221111   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCccee--eecCCCHHHHHHHHhc---ccEEEcCC--Cc--
Q 012647          363 DEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF--SFTGLNKAQSDNMTNK---WHVYMTKD--GR--  433 (459)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f--~~~~l~~~~~~~ll~~---~gI~v~~g--gR--  433 (459)
                         .+.++++.++...+..++.+.|. +..     .......-||  +........+.+++++   .|+....-  +.  
T Consensus       340 ---~~GL~~iA~~~~~~A~yl~~~L~-~~~-----~~~~~~~~f~e~v~~~~~~~~~~~l~~~~~~~gl~~~~~~~~~~l  410 (429)
T PF02347_consen  340 ---PEGLREIAERIHLNAHYLAERLK-KIY-----GLPFDNPFFFEFVVVFSKDKEVEELLKRGIEGGLNLRYPDDGALL  410 (429)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHC-CTT-----BECSSSSSBSSEEEEESS-HHHHHHHHTT----EEEGGG-SSEEE
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHH-Hhc-----CcccCCCCceeeeeecCCcHHHHHHHHHHHhcCCCccccCCCeEE
Confidence               46789999999999999999999 752     1222222333  2222222334344443   35444321  23  


Q ss_pred             EEEccC-ChhhHHHHHHHH
Q 012647          434 ISLAGL-SLAKCEYLADAI  451 (459)
Q Consensus       434 is~~~~-~~e~i~~~~~~l  451 (459)
                      ||++-. ++|+|+.+++++
T Consensus       411 i~~TE~~t~edid~lv~~f  429 (429)
T PF02347_consen  411 ICVTETRTKEDIDRLVEAF  429 (429)
T ss_dssp             EE--TT--HHHHHHHHH--
T ss_pred             EEccCCCCHHHHHHHHhcC
Confidence            444433 667888877754

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=98.33  E-value=0.00043  Score=67.23  Aligned_cols=147  Identities=14%  Similarity=0.048  Sum_probs=98.4

Q ss_pred             CCCCCCcccHHHHHHHHHHHhcCCCCcc--------ccCceEEeecccchhHHHHHHHHHHH-------hCCC-------
Q 012647          120 KEYLPIEGLAAFNKVTAELLFGADNSVL--------KEQRVATVQGLSGTGSLRLAAALIER-------YFPG-------  177 (459)
Q Consensus       120 ~~Y~~~~g~~~lr~aia~~l~~~~~~~~--------~~~~i~~~~t~ggt~a~~l~~~~~~~-------~~~g-------  177 (459)
                      +.|....-..+|..-+.+|+....+++.        ....|+.   ..++++..++  +++.       +..+       
T Consensus       103 FtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ---~tases~lva--llaaR~~~i~~~k~~~p~~~e~  177 (511)
T KOG0628|consen  103 FTWASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQ---GTASESVLVA--LLAARTEKIEEIKSRPPELHES  177 (511)
T ss_pred             ceeecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEe---cCcchhHHHH--HHHHHHHHHHHhhcCCCcccch
Confidence            4555566778898888888876544421        1122322   3345666655  2222       1222       


Q ss_pred             -----CEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHH
Q 012647          178 -----AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPE  249 (459)
Q Consensus       178 -----d~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~ii~~~p~NPTG~~~s~~  249 (459)
                           =.+.+.+.++.+.+..+...|++.+.++.+  .+++++.+.|.++|.+.   +-.+.+++ .+..  |-.+-+-+
T Consensus       178 ~~~~~lV~Y~SDqahssveka~~i~~VklR~l~td--~n~~mr~~~L~~AIe~D~arGlIPf~v~-at~G--TT~~ca~D  252 (511)
T KOG0628|consen  178 SVLARLVAYCSDQAHSSVEKACLIAGVKLRALPTD--ENFGMRGDTLRKAIEEDIARGLIPFFVC-ATLG--TTSSCAFD  252 (511)
T ss_pred             hhhhhheEEecCcccchHHHhHhhcceeEEEeecc--cCcCCCHHHHHHHHHHHHhCCCccEEEE-Eeec--Cccccccc
Confidence                 156777788888888888999999999984  48999999999999872   11233333 2221  22223448


Q ss_pred             HHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012647          250 QWEKIADVIQEKNHIPFFDVAYQGFAS  276 (459)
Q Consensus       250 ~l~~i~~l~~~~~~~ii~Deay~~~~~  276 (459)
                      ++.+|..+|+++|+|+++|.+|.+-.+
T Consensus       253 ~l~elg~Vc~~~glWLHVDAAYAGsa~  279 (511)
T KOG0628|consen  253 ELEELGPVCREEGLWLHVDAAYAGSAF  279 (511)
T ss_pred             cHHHhcchhhhcCEEEEeehhhccccc
Confidence            899999999999999999999997664

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=98.26  E-value=0.00081  Score=64.95  Aligned_cols=314  Identities=12%  Similarity=0.127  Sum_probs=163.1

Q ss_pred             eecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCc-----c----cHHHHHHHHHHHhcCCCCccccCceEEeec
Q 012647           87 NLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIE-----G----LAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (459)
Q Consensus        87 ~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~-----g----~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (459)
                      -++.|.|    +. .+|+.|.+-+.+-  ..+...|+|.+     |    +-++...++++.    |.++.....    -
T Consensus        79 fiG~GyY----~~-~~P~vI~rnile~--pewyTaYTPYQpEISQGrLqaLfefQtlv~dLT----Gm~VANASm----~  143 (450)
T COG0403          79 FIGAGYY----DT-YTPPVILRNILEN--PEWYTAYTPYQPEISQGRLEALFEFQTLVADLT----GLDVANASM----L  143 (450)
T ss_pred             hccCccc----CC-cCcHHHHHHhhcC--ccccccCCCCchhhhhHHHHHHHHHHHHHHHHh----CCCcccchh----h
Confidence            5677887    33 3477776444331  23456676632     2    234455555553    333322222    4


Q ss_pred             ccchhHHHHHHHHHHHhC--CCCEEEEcCCCCcchHHHhhh----CCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcE
Q 012647          158 LSGTGSLRLAAALIERYF--PGAKVLISSPTWGNHKNIFND----ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (459)
Q Consensus       158 ~ggt~a~~l~~~~~~~~~--~gd~Vlv~~p~y~~~~~~~~~----~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~  231 (459)
                      -++|.+-+.+.... ...  +..+++|+.-+|+.+...++.    .|.+++.++.+       |++.++++ ++  ..+.
T Consensus       144 DeaTAaAEAm~ma~-r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-------d~~~l~~~-~~--~~~~  212 (450)
T COG0403         144 DEATAAAEAMLMAK-RVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-------DLDDLESA-DD--GDVF  212 (450)
T ss_pred             hhHHHHHHHHHHHH-HhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-------hhhhhhhc-cc--cCeE
Confidence            56666666653222 233  358999999999999888773    45666666552       67788777 43  2556


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC---ccc
Q 012647          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN---LGL  308 (459)
Q Consensus       232 ~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~---~~~  308 (459)
                      .+++-.|+ -.|  ....++++|.+.++++|.++++=.==-.++.  .  ..      ..+.+-+|++++-.-.   +|.
T Consensus       213 gv~vQyP~-~~G--~~~~d~~~l~~~~h~~~al~~v~aDplaL~L--L--~p------PGe~GADIvvG~~QrfGvPmgf  279 (450)
T COG0403         213 GVLVQYPN-TFG--IVEEDLRALIEAAHSAGALVIVAADPLALGL--L--KP------PGEFGADIVVGSAQRFGVPMGF  279 (450)
T ss_pred             EEEEecCC-CCC--ccchhHHHHHHHHhhcCCEEEEEechhHhhc--c--CC------ccccCCceEEecCcccCCCcCC
Confidence            66654444 345  2337799999999999987775211011110  0  00      1223456667665442   333


Q ss_pred             CCCCcceEEEEeCChhHHHHH------------------------HHHHHhhccccccCCchH--HHHHHHH-HhCChhh
Q 012647          309 YAERIGAMNVVCSSSDLAARV------------------------KSQLKRLARPMYSNPPVH--GARIVAN-VVGNPAL  361 (459)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~--~~~~~~~-~L~~~~~  361 (459)
                      .|-.+||..+   ..+....+                        ...+++-+-....+.+..  +..++.. .+..   
T Consensus       280 GGPhag~fA~---~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~hG---  353 (450)
T COG0403         280 GGPHAGYFAV---KDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYHG---  353 (450)
T ss_pred             CCcceeeeeE---hHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHhC---
Confidence            4555777755   33311100                        001111111111111111  1111111 1111   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCccee--eecCCCHHHHHHHHhc---ccEEEcCC--CcE
Q 012647          362 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF--SFTGLNKAQSDNMTNK---WHVYMTKD--GRI  434 (459)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f--~~~~l~~~~~~~ll~~---~gI~v~~g--gRi  434 (459)
                          .+.++++..+..++..++.+.|+ +.+.  +++....  .||  +.+.+..+..+.++++   .|+-++.-  .++
T Consensus       354 ----p~GLk~iA~r~~~~a~~la~~L~-~~~~--g~~~~~~--~fFdt~~v~~~~~~~~~l~~~~~~~G~~L~~~~~~~~  424 (450)
T COG0403         354 ----PQGLKEIAERIHRLAAYLAAGLK-EIGA--GVELVFD--HFFDTFTVRVPEEVAEALLAAAIAGGINLRRVDADTV  424 (450)
T ss_pred             ----hHHHHHHHHHHHHHHHHHHHHHh-hcCC--ceEeccc--cceeeEEEecchhHHHHHHHHHHhcCCceeeecCCce
Confidence                35688999999999999999999 7641  1333322  455  2234432333333332   35555432  254


Q ss_pred             EEc--cC-ChhhHHHHHHHHHHH
Q 012647          435 SLA--GL-SLAKCEYLADAIIDS  454 (459)
Q Consensus       435 s~~--~~-~~e~i~~~~~~l~~~  454 (459)
                      .++  .. ++++|+.+++++...
T Consensus       425 ~ia~tEt~t~~~i~~l~~~~~~~  447 (450)
T COG0403         425 LIALTETTTKEDIDALVAAFGGV  447 (450)
T ss_pred             EEEeecccCHHHHHHHHHHHhhh
Confidence            443  22 567888888877654

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=98.26  E-value=9.6e-05  Score=70.87  Aligned_cols=284  Identities=15%  Similarity=0.111  Sum_probs=155.3

Q ss_pred             CCccccCceEEeecccchhHHHHHHHHHHHhC--CC----------CEEE-EcCCCCcchHHHhhhCC---CCeeeeeee
Q 012647          144 NSVLKEQRVATVQGLSGTGSLRLAAALIERYF--PG----------AKVL-ISSPTWGNHKNIFNDAR---VPWSEYRYY  207 (459)
Q Consensus       144 ~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~--~g----------d~Vl-v~~p~y~~~~~~~~~~G---~~v~~v~~~  207 (459)
                      |.+...+.|.   ++||+-++.-+. .++...  |+          +-|+ .++-++.+....+..+|   -.++.|+. 
T Consensus       155 Gw~~~~DgIf---~pggsisn~Ya~-~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg~gtd~c~~v~t-  229 (510)
T KOG0629|consen  155 GWEEGGDGIF---APGGSISNMYAM-NCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLGLGTDHCIKVKT-  229 (510)
T ss_pred             CCCCCCCcee---cCCchhHHHHHH-HHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHhccCCceeEEecc-
Confidence            4433335554   577765554442 233332  33          2333 33456666777777777   46777887 


Q ss_pred             cCCCCCCCHHHHHHHHHcCCCC---cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChh
Q 012647          208 DPKTVGLDFEGMIADIKAAPGG---SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDAS  284 (459)
Q Consensus       208 ~~~~~~~d~e~l~~~i~~~~~~---~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~  284 (459)
                       ++.+.+++++|++.|.+...+   +.++-.+....--|..   +++..|+++|++|++|+++|.||.+-..-+.     
T Consensus       230 -~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAF---DdL~~iadiC~k~~lWmHvDAAwGGglLmS~-----  300 (510)
T KOG0629|consen  230 -DERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAF---DDLNGIADICEKHKLWMHVDAAWGGGLLMSR-----  300 (510)
T ss_pred             -cccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeecc---CcHHHHHHHHHhcCEEEEeecccccccccCh-----
Confidence             456789999999998764323   4444444456666888   9999999999999999999999887332111     


Q ss_pred             HHHHHHh-cCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhc------cccccCCchHHHHHHHHHhC
Q 012647          285 SVRLFAT-RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLA------RPMYSNPPVHGARIVANVVG  357 (459)
Q Consensus       285 ~~~~~~~-~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~L~  357 (459)
                      .-+..+. ...-.-+..+.+|.+| ..+..+....  +...    +..+.....      +.-...++.   ......++
T Consensus       301 k~R~kl~Giera~SvtwnpHK~~g-aplqCsa~l~--r~~g----ll~~Cn~~~A~YLFq~dK~YdvS~---DTgdK~iQ  370 (510)
T KOG0629|consen  301 KHRHKLTGIERANSVTWNPHKLMG-APLQCSAFLT--REEG----LLQRCNQMSAIYLFQQDKFYDVSY---DTGDKAIQ  370 (510)
T ss_pred             hhHhhccCccccCceeecHHHhhc-CcchhhHHHH--HHHH----HHHhhcccchhhhhccCceeeccc---ccccchhh
Confidence            1111111 1122355678899998 5566666522  2221    222111110      000000000   01111111


Q ss_pred             Ch---hhHHHH---H----HHHHHHHHHHHHHHHHHHHHHhhccCCCCCcc-ccc--CCccee-eec------CC-----
Q 012647          358 NP---ALFDEW---K----AEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWS-FIL--RQIGMF-SFT------GL-----  412 (459)
Q Consensus       358 ~~---~~~~~~---~----~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~~~--~~~g~f-~~~------~l-----  412 (459)
                      .+   +....|   +    +..++..+++-++.+++++.|+ +-+.   +. +..  |+--.+ .|.      ++     
T Consensus       371 CGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lr-er~~---~~~l~~~~pe~~nv~fw~vp~~lR~~~~~~e  446 (510)
T KOG0629|consen  371 CGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLR-EREG---FEMLFELEPEHVNVCFWYVPPSLRGWQENPE  446 (510)
T ss_pred             cCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH-hccc---ceehhcCCCceEEEeeccCchHhccCcccch
Confidence            11   122222   2    4467888899999999999999 6542   22 222  332222 221      11     


Q ss_pred             --------CHHHHHHHHhcccEEE---cCCC------cEEEccC--ChhhHHHHHHHHHHHHh
Q 012647          413 --------NKAQSDNMTNKWHVYM---TKDG------RISLAGL--SLAKCEYLADAIIDSYH  456 (459)
Q Consensus       413 --------~~~~~~~ll~~~gI~v---~~gg------Ris~~~~--~~e~i~~~~~~l~~~~~  456 (459)
                              .+..-++++++ |-..   .|.+      |+-+.+.  ++++++.+++-|..+=+
T Consensus       447 ~~~rL~kVaPkIK~~Mm~~-Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerlgq  508 (510)
T KOG0629|consen  447 RDSRLVKVAPKIKERMMKK-GTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERLGQ  508 (510)
T ss_pred             hhhHHHhhCcHHHHHHHhc-cceeeEecccccccchhheecccchhhhhhHHHHHHHHHHhcc
Confidence                    22333455554 5433   2333      7766543  78899999998876544

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=98.19  E-value=0.00045  Score=65.49  Aligned_cols=166  Identities=21%  Similarity=0.261  Sum_probs=100.4

Q ss_pred             CeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHH-H--------
Q 012647          263 HIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQ-L--------  333 (459)
Q Consensus       263 ~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~-~--------  333 (459)
                      .++++|.. +.....+.  |.         ..-.++-.|.-|++|+.|  ++-+++   .+++++++... +        
T Consensus       171 ~~~v~D~S-S~ilsr~i--Dv---------sk~dviyagaQKnlGpaG--ltvvIv---r~~~l~r~~~~~~P~if~y~~  233 (365)
T COG1932         171 GLLVADAS-SAILSRPI--DV---------SKYDVIYAGAQKNLGPAG--LTVVIV---RPDLLERAESYTLPSIFDYLT  233 (365)
T ss_pred             ceEEEecc-cHHhcCCC--Ch---------hHcceEEEehhhccCccc--eEEEEE---cHHHHhcccccCCchHhhchh
Confidence            78999988 44432211  11         123566679999999988  787776   77766665432 1        


Q ss_pred             HhhccccccCCchHHHHHHHHH----hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcc-cccC--Cc--
Q 012647          334 KRLARPMYSNPPVHGARIVANV----VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWS-FILR--QI--  404 (459)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~----L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~~~~--~~--  404 (459)
                      ......++..||.++-......    .+.++        ++.+.++-+++.+.|++.+. +-++   +. .+.+  ..  
T Consensus       234 ~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GG--------l~~~~~rn~~ka~~LY~~id-~s~f---y~~~v~~~~RS~m  301 (365)
T COG1932         234 HADNGSMYNTPPTFAWYLLGLVFKWLKSQGG--------LEALEARNQAKAQLLYDWID-KSDF---YRNLVAKANRSRM  301 (365)
T ss_pred             hhccCCccCCcHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHHHH-hCCc---cccccchhhccce
Confidence            1112345555666655544322    22332        57888889999999999998 6552   11 1111  11  


Q ss_pred             -ceeeec--CCCHHHHHHHHhcccEEEcCC-----C-cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          405 -GMFSFT--GLNKAQSDNMTNKWHVYMTKD-----G-RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       405 -g~f~~~--~l~~~~~~~ll~~~gI~v~~g-----g-Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                       ..|-+.  .++..++..+.++ |+....|     | |+|+.. ++.|+++.+++-++.+.++.
T Consensus       302 nV~f~~~~~~ld~~fv~eae~~-gl~~lkGhr~vgGmRasiynA~~~e~veaL~~fm~~f~~~~  364 (365)
T COG1932         302 NVTFTLVDAELDKGFVAEAEAA-GLIYLKGHRSVGGLRASIYNAVPLEDVEALTDFMDWFEETY  364 (365)
T ss_pred             eEEEEcCcHHHHHHHHHHHHHc-CCceeccccCCCceeeeeecCCCHHHHHHHHHHHHHHHHhh
Confidence             112222  2345566666664 6665443     5 999764 48899999999998877653

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=98.03  E-value=0.00024  Score=66.57  Aligned_cols=212  Identities=10%  Similarity=0.097  Sum_probs=117.7

Q ss_pred             CHHHHHHHHHcCC---CCcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH-
Q 012647          215 DFEGMIADIKAAP---GGSFILLHGCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF-  289 (459)
Q Consensus       215 d~e~l~~~i~~~~---~~~~~ii~~~p~NPTG-~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~-  289 (459)
                      .++++++.|....   .....+|+..-+..-| ..-|++-++.|-+++++||+.+|+||+..+.+..   .+.|.-..+ 
T Consensus       254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaT---Gk~WaHehw~  330 (484)
T KOG1405|consen  254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGAT---GKFWAHEHWN  330 (484)
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCcc---CceeeehhcC
Confidence            3566666665521   2334455444466666 4578899999999999999999999996665543   234432222 


Q ss_pred             HhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHH--HHHHHHhCChhhHHHHHH
Q 012647          290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGA--RIVANVVGNPALFDEWKA  367 (459)
Q Consensus       290 ~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~~~~~~~~~~~  367 (459)
                      ++..++++   +|||-|-..    ||..    +++++  -.+.++..  .+|.+-|.-..  ..+...+++.        
T Consensus       331 l~~PpD~v---TFSKK~q~g----Gffh----~~~fr--pn~pYrif--NTWmGdP~k~lll~~vv~~I~~~--------  387 (484)
T KOG1405|consen  331 LDSPPDVV---TFSKKFQTG----GFFH----DEEFR--PNEPYRIF--NTWMGDPSKNLLLEEVVQEIKRE--------  387 (484)
T ss_pred             CCCCccce---ehhhhhhcC----cccc----CcccC--CCchHHHh--hhhcCChHHHHHHHHHHHHHhHH--------
Confidence            22233444   899998743    5542    33311  00112222  34544443221  1122223322        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcc--CCCCCcccccCCcceeeecCC-C---HHHHHHHHhcccEEEcCCC----cE--E
Q 012647          368 EMEMMAGRIKNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGL-N---KAQSDNMTNKWHVYMTKDG----RI--S  435 (459)
Q Consensus       368 ~~~~~~~~~~~~~~~l~~~L~~~~--g~~~~~~~~~~~~g~f~~~~l-~---~~~~~~ll~~~gI~v~~gg----Ri--s  435 (459)
                         ...+..+..-++|...|. ++  ..|+.+.-....|.|..| +. +   .+.+-..++.+||.+..+|    |+  +
T Consensus       388 ---~Ll~n~~~vG~~l~~gL~-~Lq~~~p~~~~~~RGrGTF~a~-d~ps~~~Rdk~i~~~~~nGv~~GGCg~~siRfRPs  462 (484)
T KOG1405|consen  388 ---DLLNNVAHVGKALLKGLL-ELQAKYPGKINNLRGRGTFIAW-DCPSGSIRDKLILIARLNGVNLGGCGDKSIRFRPS  462 (484)
T ss_pred             ---HHHHHHHHHHHHHHHHHH-HHHHhCchhhhcccccceEEEE-eCCChHHHHHHHHHHHHcCceecccccceeeeccc
Confidence               223344444556666655 43  234444445555554455 33 2   2334455555799998887    55  4


Q ss_pred             EccCChhhHHHHHHHHHHHHhhc
Q 012647          436 LAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       436 ~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      +.. .+...+.+++++.+++..+
T Consensus       463 Lvf-~~~Ha~i~l~~~~k~l~~l  484 (484)
T KOG1405|consen  463 LVF-RKHHADIFLDIFDKILAGL  484 (484)
T ss_pred             eee-hhhhHHHHHHHHHHHhccC
Confidence            433 7788899999999988753

>PRK12566 glycine dehydrogenase; Provisional

Probab=97.74  E-value=0.0075  Score=65.17  Aligned_cols=303  Identities=13%  Similarity=0.077  Sum_probs=152.8

Q ss_pred             eeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCc---------ccHHHHHHHHHHHhcCCCCccccCceEEee
Q 012647           86 LNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIE---------GLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (459)
Q Consensus        86 i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~---------g~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (459)
                      .-++.|.|    ++ .+|+.|.+.+.+.  ..+...|+|.+         .+-++...|+++.    |.++....+    
T Consensus        82 ~fiG~G~y----~~-~~P~vi~~~i~~~--~~~yTaYTPYQpEisQG~Lqal~e~Qtmi~~Lt----Gm~vaNASl----  146 (954)
T PRK12566         82 SLIGMGYH----GT-VTPTVILRNVLEN--PGWYTAYTPYQPEIAQGRLEALLNFQQMTIDLT----GLDLANASL----  146 (954)
T ss_pred             cccccccc----CC-cCcHHHHHHHHhC--chhhhcCCCCCchhhhHHHHHHHHHHHHHHHHh----Cchhhhhhh----
Confidence            45677777    32 3466665544432  23345666643         2345556666663    222211112    


Q ss_pred             cccchhHHHHHHHHHHHhCC--CCEEEEcCCCCcchHHHhh----hCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCc
Q 012647          157 GLSGTGSLRLAAALIERYFP--GAKVLISSPTWGNHKNIFN----DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGS  230 (459)
Q Consensus       157 t~ggt~a~~l~~~~~~~~~~--gd~Vlv~~p~y~~~~~~~~----~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~  230 (459)
                      --++|.+-+.+.... ....  ..+|+|++-.++.+..+++    ..|.+++.             +++++.+.+   .+
T Consensus       147 ~D~atA~aEA~~ma~-~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-------------~~~~~~~~~---~~  209 (954)
T PRK12566        147 LDEATAAAEAMALAK-RVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV-------------DAVDNLAAH---AV  209 (954)
T ss_pred             ccchhHHHHHHHHHH-HHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE-------------cchhhcCCC---CE
Confidence            235555544332112 2222  4689999999998887766    34555543             223333332   46


Q ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEc---CCcCcc
Q 012647          231 FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS---YSKNLG  307 (459)
Q Consensus       231 ~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S---~SK~~~  307 (459)
                      ..+++.+|| -.|.+   +++++|+++++++|.+++ +.+ -.+...-+.  .      ..+.+-+|++++   |.=-+|
T Consensus       210 ~~v~vq~P~-~~G~i---~d~~~i~~~~h~~gal~~-~~~-d~laL~ll~--~------Pge~GADI~vG~~Q~fGvp~~  275 (954)
T PRK12566        210 FGALLQYPD-THGEI---RDLRPLIDQLHGQQALAC-VAA-DLLSLLVLT--P------PGELGADVVLGSTQRFGVPMG  275 (954)
T ss_pred             EEEEEECCC-CceEE---ccHHHHHHHHHHcCCEEE-EEe-CHHHHhCCC--C------hhhcCCcEEeeCCCcCCCCCC
Confidence            666665664 45888   789999999999998866 333 111111010  0      123344555553   222233


Q ss_pred             cCCCCcceEEEEeCChhHHHHHHH------------------------HHHhhccccccCCch--HHHHHHHH-HhCChh
Q 012647          308 LYAERIGAMNVVCSSSDLAARVKS------------------------QLKRLARPMYSNPPV--HGARIVAN-VVGNPA  360 (459)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~--~~~~~~~~-~L~~~~  360 (459)
                      ..|--.||+.+   .+++...+-.                        .+++-+-....+.+.  ++..++.. .+..  
T Consensus       276 ~GGP~ag~~a~---~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~G--  350 (954)
T PRK12566        276 YGGPHAAYFAC---RDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHG--  350 (954)
T ss_pred             CCCCCeeeeee---hHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhC--
Confidence            33444777754   3332111110                        011111111111111  11111111 1222  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCccee--eecCC--CH-HHHHHHHhcccEEEcC--CCc
Q 012647          361 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF--SFTGL--NK-AQSDNMTNKWHVYMTK--DGR  433 (459)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f--~~~~l--~~-~~~~~ll~~~gI~v~~--ggR  433 (459)
                           .+.++++.++...+..+|.+.|. +.|    ++...  ..||  +-+.+  +. +..++.++ .||-++-  .++
T Consensus       351 -----p~Gl~~ia~~~~~~a~~l~~~l~-~~g----~~~~~--~~fF~~~~v~~~~~~~~~~~~a~~-~~~n~r~~~~~~  417 (954)
T PRK12566        351 -----PEGLKRIAQRVHRLTAILAAGLE-AKG----IKRLN--RHFFDTLTLEVGGAQAAIIESAEA-ARINLRILGRGR  417 (954)
T ss_pred             -----hHHHHHHHHHHHHHHHHHHHHHH-hcC----Ccccc--CCccceEEEEccCCHHHHHHHHHH-CCCeeEEeCCCe
Confidence                 25578888989999999999999 877    34332  2454  11222  23 33445544 4776543  344


Q ss_pred             E--EEccC-ChhhHHHHHHHHH
Q 012647          434 I--SLAGL-SLAKCEYLADAII  452 (459)
Q Consensus       434 i--s~~~~-~~e~i~~~~~~l~  452 (459)
                      +  |+... +.++++.+++.+.
T Consensus       418 ~~~s~de~~~~~~~~~~~~~f~  439 (954)
T PRK12566        418 LGVSLDETCDEATVARLFDIFL  439 (954)
T ss_pred             EEEEeCCCCCHHHHHHHHHHhc
Confidence            4  44332 6688888888773

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=97.25  E-value=0.008  Score=54.36  Aligned_cols=171  Identities=16%  Similarity=0.138  Sum_probs=96.1

Q ss_pred             HhhhCCCCeeeee-eecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCC--CCCHHHHHHHHHHHHhcCCeeEEec
Q 012647          193 IFNDARVPWSEYR-YYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGI--DPTPEQWEKIADVIQEKNHIPFFDV  269 (459)
Q Consensus       193 ~~~~~G~~v~~v~-~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~--~~s~~~l~~i~~l~~~~~~~ii~De  269 (459)
                      .+-.+|++++.+. +.+.+...-|++.+++.+.+..+...+.+++    -|..  .-+++.+++|+.+|..|++.-|+..
T Consensus       119 si~~agfepiiie~i~d~d~l~tdleav~~~iee~g~dcilci~s----ttscfapr~pd~leaiaaica~~diphivnn  194 (432)
T KOG3843|consen  119 SIIHAGFEPIIIENILDGDELITDLEAVEAIIEELGEDCILCIHS----TTSCFAPRSPDNLEAIAAICAAHDIPHIVNN  194 (432)
T ss_pred             HHHhcCCCceeeeccccchHHHHhHHHHHHHHHHhCCceEEEEee----cccccCCCCCchHHHHHHHHHccCchhhhcc
Confidence            3346799887765 3333344568999999998865554444432    2221  2345889999999999999999999


Q ss_pred             cCCCCCCCCCCCChhHHHHH---HhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCch
Q 012647          270 AYQGFASGSLDNDASSVRLF---ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPV  346 (459)
Q Consensus       270 ay~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (459)
                      +|.--. .      ..++..   ..-+..+-++.|+-|+|-.|   +|..++-.-...    ++....+...+-.+..|.
T Consensus       195 ayglqs-e------e~i~~iaa~~~~grida~vqsldknf~vp---vggaiia~fk~n----~iq~iak~ypgrasa~ps  260 (432)
T KOG3843|consen  195 AYGLQS-E------ECIHKIAAAAECGRIDAFVQSLDKNFMVP---VGGAIIAAFKDN----FIQEIAKMYPGRASASPS  260 (432)
T ss_pred             ccccch-H------HHHHHHHHHhhhccHHHHHHHhhhcceee---cchhHhhHhHHH----HHHHHHHhCCCccccCcc
Confidence            975322 1      122222   22233456778999999766   565533122223    333333322222334555


Q ss_pred             HHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          347 HGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD  385 (459)
Q Consensus       347 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  385 (459)
                      ....+....+...+|.    +-+.+.++.+-..++.+..
T Consensus       261 ~dllitll~~gqn~f~----e~~~eqkemf~~l~~ki~~  295 (432)
T KOG3843|consen  261 LDLLITLLSLGQNAFK----ELFGEQKEMFLKLRNKIIK  295 (432)
T ss_pred             HHHHHHHHHhchhHHH----HHHHHHHHHHHHHHHHHHH
Confidence            5444444445544553    3334444444444444443

>PLN02672 methionine S-methyltransferase

Probab=96.65  E-value=0.059  Score=59.72  Aligned_cols=198  Identities=14%  Similarity=0.056  Sum_probs=120.5

Q ss_pred             HHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH----hCCCCEEEE
Q 012647          107 KKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER----YFPGAKVLI  182 (459)
Q Consensus       107 ~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~----~~~gd~Vlv  182 (459)
                      +..+...+.++...-|.|..|...||+.||.|+...+++++++++|++  ..+-..+++.+.++...    ++.+.+...
T Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  484 (1082)
T PLN02672        407 LAYLASALKGLSYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPDNVVV--FPSRAVAIENALRLFSPRLAIVDEHLTRWL  484 (1082)
T ss_pred             HHHHHHHHccCCCCCCCCCccchHHHHHHHHHHHHhcCCcCCccceEE--eccHHHHHHHHHHhhChHHHhhhhhhhccC
Confidence            444555666655678999999999999999999999999999999999  88889999887443221    122222222


Q ss_pred             cCCCCcchHHHhhhCC--------CCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHH
Q 012647          183 SSPTWGNHKNIFNDAR--------VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKI  254 (459)
Q Consensus       183 ~~p~y~~~~~~~~~~G--------~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i  254 (459)
                      +.    .|...+...|        .++.-+.-  +.  +  -+.+.+.++..  ++.+++..-.+   +-..+...++.|
T Consensus       485 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~--~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~  549 (1082)
T PLN02672        485 PK----KWLTSLAIENATSDSKSDDVITVIEA--PR--Q--SDLVIELIKKL--KPQVVVTGMAD---FEMRTSTAFEHL  549 (1082)
T ss_pred             CH----HHHhHhhhhcccccCccCCeEEEEeC--CC--c--chHHHHHHHhC--CCeEEEEeccc---hhhhhHHHHHHH
Confidence            11    2333332222        11211111  11  1  13556666653  33455532222   445556889999


Q ss_pred             HHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc--CCeEEEEEcCCcCcccCCCCcceEEEEeCChh
Q 012647          255 ADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR--GMELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (459)
Q Consensus       255 ~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~  324 (459)
                      .+.+++.|..++.|.. ..|-..+......-+..+...  ..+..++.++-|+--.+.+-+.++  +.-+..
T Consensus       550 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  618 (1082)
T PLN02672        550 LNVTAEIGARLFLDIS-DHLELSSLPGSNGVLKYLAGHPLPSHAAIICGLVKNQVYSDLEVAFV--ISENEA  618 (1082)
T ss_pred             HHHHHhhCcEEEEehh-hheeeccCCCcccHHHHhcCCCCCcchhHhhhhhhccccccceEEEE--ecCcHH
Confidence            9999999999999987 333222222222222222221  236667778888877788989998  445555

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=96.30  E-value=0.045  Score=55.73  Aligned_cols=142  Identities=17%  Similarity=0.180  Sum_probs=94.6

Q ss_pred             CCCCCC---cccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhC--CC----CEEEEcCCCCcch
Q 012647          120 KEYLPI---EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF--PG----AKVLISSPTWGNH  190 (459)
Q Consensus       120 ~~Y~~~---~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~--~g----d~Vlv~~p~y~~~  190 (459)
                      +-|.|.   +|+.++-+.+-+++-.--|    -+++.+ |-++|.++-+.-...++.+.  .|    ...++|...++..
T Consensus       569 HPF~P~eQaqGY~~lf~~Le~~Lc~iTG----~D~~s~-QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTN  643 (1001)
T KOG2040|consen  569 HPFAPVEQAQGYQQLFTELEKDLCEITG----FDSFSL-QPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTN  643 (1001)
T ss_pred             CCCCchHHHhhHHHHHHHHHHHhheeec----ccceee-cCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCC
Confidence            455553   4666666555555543322    255554 34444444444322333322  33    3567777788878


Q ss_pred             HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEecc
Q 012647          191 KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVA  270 (459)
Q Consensus       191 ~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Dea  270 (459)
                      ...+.++|.+|++|..  +.++.+|..+|.+...++.+.-..++++.|+.- |+.  .+.+++++++.++||--+..|.+
T Consensus       644 PASA~MagmkvvpV~~--~~~G~id~~dLk~kaekh~~~Laa~MvTYPST~-Gvf--E~~i~d~cd~iHehGGQVYlDGA  718 (1001)
T KOG2040|consen  644 PASAAMAGMKVVPVGC--DANGNIDMVDLKAKAEKHKDNLAALMVTYPSTH-GVF--EEGIDDICDIIHEHGGQVYLDGA  718 (1001)
T ss_pred             hhhHHhcCCEEEEeec--cCCCCccHHHHHHHHHHhhhhhheeEEeccccc-ccc--cccHHHHHHHHHhcCCEEEecCC
Confidence            8888999999999998  557789999999988776555556666666522 443  36699999999999999999998


Q ss_pred             C
Q 012647          271 Y  271 (459)
Q Consensus       271 y  271 (459)
                      -
T Consensus       719 N  719 (1001)
T KOG2040|consen  719 N  719 (1001)
T ss_pred             C
Confidence            3

>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]

Probab=95.55  E-value=1.2  Score=41.36  Aligned_cols=184  Identities=18%  Similarity=0.225  Sum_probs=97.4

Q ss_pred             CCCCC--CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcce
Q 012647          238 AHNPT--GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA  315 (459)
Q Consensus       238 p~NPT--G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~  315 (459)
                      +.|.|  |+-++.-+      +-.-+|.+++.|-. +.|...+.+.           ....++..+--|.+|+.|+  -.
T Consensus       155 CaNETVHGVEf~~~P------~~~~~~~vlVaDmS-SnflSrpvDv-----------sk~gvi~aGAQKN~G~aG~--Tv  214 (370)
T KOG2790|consen  155 CANETVHGVEFDFIP------VNDPKGAVLVADMS-SNFLSRPVDV-----------SKFGVIFAGAQKNVGPAGV--TV  214 (370)
T ss_pred             ecCceeeceecCCCC------CCCCCCceEEEecc-cchhcCCccc-----------hhcceEEeccccccCcccc--EE
Confidence            45666  65543322      12346888999988 6666433221           1235667788999999885  33


Q ss_pred             EEEEeCChhHHHHHHHH------HHhh--ccccccCCchHHHHHH----HHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012647          316 MNVVCSSSDLAARVKSQ------LKRL--ARPMYSNPPVHGARIV----ANVVGNPALFDEWKAEMEMMAGRIKNVRQKL  383 (459)
Q Consensus       316 ~~~v~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~----~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l  383 (459)
                      +++   .++++......      ++..  ..+.+..+|..+..+.    ..+++.++        +..+.+.-.++.+.+
T Consensus       215 viv---r~dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GG--------l~a~e~~n~~Kskll  283 (370)
T KOG2790|consen  215 VIV---RKDLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGG--------LAAMEKLNQEKSKLL  283 (370)
T ss_pred             EEE---ehhhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhccc--------HHHHHHHHHHHHHHH
Confidence            322   33322111110      0000  1122334555543333    44555554        356667777888999


Q ss_pred             HHHHhhcc-CCCCCccccc-CC--cceeee--c---CCCHHHHHHHHhcccEEEcCC-----C-cEEEcc-CChhhHHHH
Q 012647          384 FDSLSAKD-KSGKDWSFIL-RQ--IGMFSF--T---GLNKAQSDNMTNKWHVYMTKD-----G-RISLAG-LSLAKCEYL  447 (459)
Q Consensus       384 ~~~L~~~~-g~~~~~~~~~-~~--~g~f~~--~---~l~~~~~~~ll~~~gI~v~~g-----g-Ris~~~-~~~e~i~~~  447 (459)
                      ++.+. +. |+   +.+.. |.  .-|-+.  +   .+..+|+....++ +..-..|     | |-|+-. ++-++.+.+
T Consensus       284 Yd~iD-~s~gf---y~cpVe~~~RS~MNV~Fri~~d~Le~eFLkeA~~~-~mv~LKGhRSVGGiRASlYNAisv~~~q~L  358 (370)
T KOG2790|consen  284 YDAID-NSNGF---YRCPVEPSVRSRMNVPFRIEKDELEAEFLKEAAKE-HMVQLKGHRSVGGIRASLYNAISVEEVQKL  358 (370)
T ss_pred             HHHHH-hcCCe---EEcccchhhhhhcccceeecchHHHHHHHHHHHHh-hhhccccccccccchhhhhccccHHHHHHH
Confidence            99998 54 42   22211 11  011111  1   1244666666665 4433333     4 888654 378888888


Q ss_pred             HHHHHHHHhh
Q 012647          448 ADAIIDSYHN  457 (459)
Q Consensus       448 ~~~l~~~~~~  457 (459)
                      ++-+++..+.
T Consensus       359 ~~~m~~F~k~  368 (370)
T KOG2790|consen  359 AAFMKEFQKK  368 (370)
T ss_pred             HHHHHHHHHh
Confidence            8888777654

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=94.33  E-value=4.7  Score=37.91  Aligned_cols=301  Identities=16%  Similarity=0.077  Sum_probs=158.9

Q ss_pred             cccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCC---CEEEEcCCCCcch----HHHhhhCC
Q 012647          126 EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG---AKVLISSPTWGNH----KNIFNDAR  198 (459)
Q Consensus       126 ~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~g---d~Vlv~~p~y~~~----~~~~~~~G  198 (459)
                      .+.+.....++....+.      .++|.+  .++-|--++..  ++..+.|.   -+|+...-.|+.-    .+.++..|
T Consensus       111 ~~De~il~l~~~iVGA~------e~Evav--mNsLTvNlh~L--l~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lhG  180 (465)
T KOG3846|consen  111 SIDEPILPLLAPIVGAQ------ENEVAV--MNSLTVNLHSL--LISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLHG  180 (465)
T ss_pred             ecchhhhhhhhhhccCC------chhhhh--HhhhhhHHHHH--HHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhcC
Confidence            34556666677765544      577877  66666666665  44445554   3788888777643    44455667


Q ss_pred             CCeee--eeeec-CCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012647          199 VPWSE--YRYYD-PKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFA  275 (459)
Q Consensus       199 ~~v~~--v~~~~-~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~  275 (459)
                      ..+..  +-..+ +....+-.+++.+.|...++...+++.+..+.=||..+   ++.+|...-+.+|+++=.|-+ ..++
T Consensus       181 ~~~e~sm~~iePREGEetlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~F---di~aIT~Agq~kgc~VGfDLA-HAvg  256 (465)
T KOG3846|consen  181 ISPENSMIQIEPREGEETLRTEDILDTIEKNGDEIALVCFSGVQYYTGQYF---DIGAITFAGQFKGCLVGFDLA-HAVG  256 (465)
T ss_pred             CChHHheEEecccccccchhHHHHHHHHHhcCCeEEEEEeecceeeccccc---chhhhhhcccCCCcEechhhh-hhhc
Confidence            65332  11111 33456778999999988777777888899999999995   455666555667999989988 4443


Q ss_pred             CCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhh-------------------
Q 012647          276 SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRL-------------------  336 (459)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~-------------------  336 (459)
                      --         ...+...+.++.|+---|-+....=.||.+.+   .+........++..+                   
T Consensus       257 NV---------pL~LHdWgVDFACWCSYKYlnaGaGgIgGlFv---Hekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lip  324 (465)
T KOG3846|consen  257 NV---------PLQLHDWGVDFACWCSYKYLNAGAGGIGGLFV---HEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIP  324 (465)
T ss_pred             CC---------ceEEeecCCceEEEeeecccccCCCccceeee---ehhhhcchhhHHhhhccCCcchhhhhccccccCc
Confidence            21         11223444556565555654321122666654   333322222222211                   


Q ss_pred             --ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-------CcccccCC----
Q 012647          337 --ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGK-------DWSFILRQ----  403 (459)
Q Consensus       337 --~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-------~~~~~~~~----  403 (459)
                        ...-.++||.+...+....|   ++..+  -.+++.|++---...+|...++...|...       .+..+.|.    
T Consensus       325 Ga~GfRiSNPpi~~v~al~~SL---e~F~q--~~~~~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~e  399 (465)
T KOG3846|consen  325 GALGFRISNPPIIDVVALRSSL---ELFAQ--FNINELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDE  399 (465)
T ss_pred             cccccccCCCcHhHHHHHHhhH---HHHHH--hhHHHHhhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCccccc
Confidence              01112345554333322211   22211  11334443333333333333331112110       01111111    


Q ss_pred             cceee--ecCC-CHHHHHHHHhcccEEEcCC---C-cEEEccC--ChhhHHHHHHHHHHHHhhc
Q 012647          404 IGMFS--FTGL-NKAQSDNMTNKWHVYMTKD---G-RISLAGL--SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       404 ~g~f~--~~~l-~~~~~~~ll~~~gI~v~~g---g-Ris~~~~--~~e~i~~~~~~l~~~~~~~  458 (459)
                      .|--+  .... ++..+++|-+ +||.....   + |+.-..+  +-.++..++.+|.++++.+
T Consensus       400 rGcQLsl~Fssp~~~vfqeL~k-rGv~~DkR~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~  462 (465)
T KOG3846|consen  400 RGCQLSLYFSSPTPKVFQELHK-RGVIGDKRRPNVIRVAPVPLYNTFSDVYIFVNALNEAMDKL  462 (465)
T ss_pred             ccceEEEEeCCCchHHHHHHHH-cCeeccccCCCceEeecchhhccHHHHHHHHHHHHHHHHHh
Confidence            11111  1111 3456677766 59987543   3 8875443  6789999999999988764

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=84.00  E-value=31  Score=30.87  Aligned_cols=94  Identities=14%  Similarity=0.155  Sum_probs=54.7

Q ss_pred             cCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCC
Q 012647          149 EQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG  228 (459)
Q Consensus       149 ~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~  228 (459)
                      ...|++  ..||..|..-+-   ..+..|..|.+.+|....-...+...| ++..+.-    .  ++.+.    +.    
T Consensus         9 gk~vlV--vGgG~va~rk~~---~Ll~~ga~VtVvsp~~~~~l~~l~~~~-~i~~~~~----~--~~~~d----l~----   68 (205)
T TIGR01470         9 GRAVLV--VGGGDVALRKAR---LLLKAGAQLRVIAEELESELTLLAEQG-GITWLAR----C--FDADI----LE----   68 (205)
T ss_pred             CCeEEE--ECcCHHHHHHHH---HHHHCCCEEEEEcCCCCHHHHHHHHcC-CEEEEeC----C--CCHHH----hC----
Confidence            456777  788888877763   234567788888887653333333333 4444321    1  12222    22    


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeE-Eecc
Q 012647          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF-FDVA  270 (459)
Q Consensus       229 ~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii-~Dea  270 (459)
                      ...+++ ..+++|       +.-++|++.|++.++++- +|+.
T Consensus        69 ~~~lVi-~at~d~-------~ln~~i~~~a~~~~ilvn~~d~~  103 (205)
T TIGR01470        69 GAFLVI-AATDDE-------ELNRRVAHAARARGVPVNVVDDP  103 (205)
T ss_pred             CcEEEE-ECCCCH-------HHHHHHHHHHHHcCCEEEECCCc
Confidence            333444 455555       566789999999998873 5554

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	459
3pd6_A	401	Crystal Structure Of Mouse Mitochondrial Aspartate		1e-121
3hlm_A	401	Crystal Structure Of Mouse Mitochondrial Aspartate		1e-121
7aat_A	401	X-Ray Structure Refinement And Comparison Of Three		1e-119
1aka_A	401	Structural Basis For The Catalytic Activity Of Aspa		1e-119
2cst_A	411	Crystal Structure Of The Closed Form Of Chicken Cyt		1e-103
1aat_A	411	Oxoglutarate-Induced Conformational Changes In Cyto		1e-103
1ajs_A	412	Refinement And Comparison Of The Crystal Structures		1e-102
1ajr_A	412	Refinement And Comparison Of The Crystal Structures		1e-101
3ii0_A	422	Crystal Structure Of Human Glutamate Oxaloacetate T		1e-100
4eu1_A	409	Structure Of A Mitochondrial Aspartate Aminotransfe		7e-97
1asl_A	396	Crystal Structures Of Escherichia Coli Aspartate Am		1e-96
4f5m_A	406	Wild-type E. Coli Aspartate Aminotransferase: A Tem		3e-96
1ix6_A	396	Aspartate Aminotransferase Active Site Mutant V39f		3e-96
1asf_A	396	The Structural Basis For The Reduced Activity Of Th		4e-96
1aia_A	396	Structural Basis For The Catalytic Activity Of Aspa		6e-96
2aat_A	396	2.8-Angstroms-Resolution Crystal Structure Of An Ac		6e-96
2q7w_A	396	Structural Studies Reveals The Inactivation Of E. C		6e-96
1asb_A	396	The Structural Basis For The Reduced Activity Of Th		1e-95
1aam_A	396	The Structural Basis For The Altered Substrate Spec		1e-95
3aat_A	396	Activity And Structure Of The Active-Site Mutants R		1e-95
1ix8_A	396	Aspartate Aminotransferase Active Site Mutant V39fN		2e-95
1b4x_A	396	Aspartate Aminotransferase From E. Coli, C191s Muta		3e-95
1g4v_A	396	Aspartate Aminotransferase Active Site Mutant N194a		3e-95
1ari_A	396	Aspartate Aminotransferase, W140h Mutant, Maleate C		3e-95
1qis_A	396	Aspartate Aminotransferase From Escherichia Coli, C		4e-95
1qir_A	396	Aspartate Aminotransferase From Escherichia Coli, C		5e-95
1qit_A	396	Aspartate Aminotransferase From Escherichia Coli, C		5e-95
1bqa_A	396	Aspartate Aminotransferase P195a Mutant Length = 39		6e-95
1g7w_A	396	Aspartate Aminotransferase Active Site Mutant N194a		1e-94
1g4x_A	396	Aspartate Aminotransferase Active Site Mutant N194a		1e-94
1arh_A	396	Aspartate Aminotransferase, Y225rR386A MUTANT Lengt		1e-94
1ahy_A	396	Aspartate Aminotransferase Hexamutant Length = 396		3e-94
2d61_A	396	Aspartate Aminotransferase Mutant Ma With Maleic Ac		4e-94
3zzj_A	396	Structure Of An Engineered Aspartate Aminotransfera		4e-94
1bqd_A	396	Aspartate Aminotransferase P138aP195A DOUBLE MUTANT		5e-94
2d5y_A	396	Aspartate Aminotransferase Mutant Mc With Isovaleri		6e-94
1g7x_A	396	Aspartate Aminotransferase Active Site Mutant N194a		8e-94
4f5f_A	406	Structure Of Aspartate Aminotransferase Conversion		1e-93
1toe_A	396	Unliganded Structure Of Hexamutant + A293d Mutant O		1e-93
2d66_A	396	Aspartate Aminotransferase Mutant Mab Length = 396		4e-93
4f5j_A	406	Rational Design And Directed Evolution For Conversi		9e-93
4f5i_A	406	Substrate Specificity Conversion Of E. Coli Pyridox		2e-92
1czc_A	396	Aspartate Aminotransferase Mutant Atb17139S142N WIT		2e-92
4f5h_A	406	Intercoversion Of Substrate Specificity: E. Coli As		3e-92
4f5g_A	406	Rational Design And Directed Evolution Of E. Coli A		4e-92
4f5k_A	406	Substrate Specificity Conversion Of Aspartate Amino		8e-92
1toj_A	396	Hydrocinnamic Acid-Bound Structure Of Srhept Mutant		1e-91
4h51_A	420	Crystal Structure Of A Putative Aspartate Aminotran		1e-91
1tog_A	396	Hydrocinnamic Acid-Bound Structure Of Srhept + A293		1e-91
1yoo_A	396	Aspartate Aminotransferase Mutant Atb17 With Isoval		2e-91
2d64_A	396	Aspartate Aminotransferase Mutant Mabc With Isovale		3e-91
1yaa_A	412	Aspartate Aminotransferase From Saccharomyces Cerev		4e-89
3meb_A	448	Structure Of Cytoplasmic Aspartate Aminotransferase		2e-87
3tat_A	397	Tyrosine Aminotransferase From E. Coli Length = 397		7e-86
4f4e_A	420	Crystal Structure Of Aromatic-Amino-Acid Aminotrans		8e-86
4eff_A	420	Crystal Structure Of Aromatic-Amino-Acid Aminotrans		8e-86
3fsl_A	397	Crystal Structure Of Tyrosine Aminotransferase Trip		3e-85
3uak_A	406	Crystal Structure Of De Novo Designed Cysteine Este		4e-79
1ay4_A	394	Aromatic Amino Acid Aminotransferase Without Substr		4e-76
3k7y_A	405	Aspartate Aminotransferase Of Plasmodium Falciparum		7e-56
3rq1_A	418	Crystal Structure Of Aminotransferase Class I And I		2e-16
4emy_A	413	Crystal Structure Of Aminotransferase From Anaeroco		2e-06

>pdb|3PD6|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate Aminotransferase, A Newly Identified Kynurenine Aminotransferase-Iv Length = 401

Iteration: 1
 Score =  433 bits (1113), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/391 (53%), Positives = 274/391 (70%), Gaps = 2/391 (0%)
Query: 62  VTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE 121
           V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL  V+KAE  +  +  +KE
Sbjct: 7   VEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKE 66
Query: 122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK-V 180
           YLPI GLA F K +AEL  G +N VLK  R  TVQ +SGTG+LR+ A+ ++R+F  ++ V
Sbjct: 67  YLPIGGLAEFCKASAELALGENNEVLKSGRFVTVQTISGTGALRVGASFLQRFFKFSRDV 126
Query: 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
            +  P+WGNH  IF DA +    YRYYDPKT G DF G + DI   P  S +LLH CAHN
Sbjct: 127 FLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDISKIPEQSVLLLHACAHN 186
Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTG+DP PEQW++IA V+++KN   FFD+AYQGFASG  D DA +VR F  +G+ + + Q
Sbjct: 187 PTGVDPRPEQWKEIASVVKKKNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINVCLCQ 246
Query: 301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPA 360
           SY+KN+GLY ER+GA  VVC  ++ A RV+SQLK L RP+YSNPP++GARI A ++ +P 
Sbjct: 247 SYAKNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPLYSNPPLNGARIAATILTSPD 306
Query: 361 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNM 420
           L  +W  E++ MA RI ++R +L  +L  K+ S  +W  I  QIGMF FTGL   Q + +
Sbjct: 307 LRKQWLQEVKGMADRIISMRTQLVSNLK-KEGSSHNWQHITDQIGMFCFTGLKPEQVERL 365
Query: 421 TNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
           T ++ VYMTKDGRIS+AG++     YLA AI
Sbjct: 366 TKEFSVYMTKDGRISVAGVTSGNVGYLAHAI 396

>pdb|3HLM|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate AminotransferaseKYNURENINE AMINOTRANSFERASE IV Length = 401

Iteration: 1
 Score =  431 bits (1108), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/391 (53%), Positives = 273/391 (69%), Gaps = 2/391 (0%)
Query: 62  VTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE 121
           V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL  V+KAE  +  +  +KE
Sbjct: 7   VEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKE 66
Query: 122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK-V 180
           YLPI GLA F K +AEL  G +N VLK  R  TVQ +SGTG+LR+ A+ ++R+F  ++ V
Sbjct: 67  YLPIGGLAEFCKASAELALGENNEVLKSGRFVTVQTISGTGALRVGASFLQRFFKFSRDV 126
Query: 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
            +  P+WGNH  IF DA +    YRYYDPKT G DF G + DI   P  S +LLH CAHN
Sbjct: 127 FLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDISKIPEQSVLLLHACAHN 186
Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTG+DP PEQW++IA V+++KN   FFD+AYQGFASG  D DA +VR F  +G+ + + Q
Sbjct: 187 PTGVDPRPEQWKEIASVVKKKNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINVCLCQ 246
Query: 301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPA 360
           SY+ N+GLY ER+GA  VVC  ++ A RV+SQLK L RP+YSNPP++GARI A ++ +P 
Sbjct: 247 SYAXNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPLYSNPPLNGARIAATILTSPD 306
Query: 361 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNM 420
           L  +W  E++ MA RI ++R +L  +L  K+ S  +W  I  QIGMF FTGL   Q + +
Sbjct: 307 LRKQWLQEVKGMADRIISMRTQLVSNLK-KEGSSHNWQHITDQIGMFCFTGLKPEQVERL 365
Query: 421 TNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
           T ++ VYMTKDGRIS+AG++     YLA AI
Sbjct: 366 TKEFSVYMTKDGRISVAGVTSGNVGYLAHAI 396

>pdb|7AAT|A Chain A, X-Ray Structure Refinement And Comparison Of Three Forms Of Mitochondrial Aspartate Aminotransferase Length = 401

Iteration: 1
 Score =  426 bits (1096), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/396 (51%), Positives = 279/396 (70%), Gaps = 2/396 (0%)
Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S +  V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL+ V+KAE ++  +
Sbjct: 2   SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK 61
Query: 117 GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP 176
             +KEYLPI GLA F + +AEL  G ++   K  R  TVQG+SGTGSLR+ A  ++R+F 
Sbjct: 62  KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFK 121
Query: 177 GAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
            ++ V +  P+WGNH  IF DA +    YRYYDPKT  LDF G + DI   P  S ILLH
Sbjct: 122 FSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLH 181
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DP  EQW+++A V++++N + +FD+AYQGFASG ++ DA ++R F  +G++
Sbjct: 182 ACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGID 241
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV 355
           ++++QSY+KN+GLY ER GA  V+C  ++ A RV+SQLK L RPMYSNPP++GARI + +
Sbjct: 242 VVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLI 301
Query: 356 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKA 415
           +  P L  EW  E++ MA RI ++R +L  +L  K+ S  +W  I  QIGMF FTGL   
Sbjct: 302 LNTPELRKEWLVEVKGMADRIISMRTQLVSNLK-KEGSSHNWQHITDQIGMFCFTGLKPE 360
Query: 416 QSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
           Q + +T ++ +YMTKDGRIS+AG++ +   YLA AI
Sbjct: 361 QVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAI 396

>pdb|1AKA|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate Aminotransferase K258h Lacking Its Pyridoxal-5'-Phosphate-Binding Lysine Residue Length = 401

Iteration: 1
 Score =  424 bits (1091), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 201/396 (50%), Positives = 278/396 (70%), Gaps = 2/396 (0%)
Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S +  V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL+ V+KAE ++  +
Sbjct: 2   SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK 61
Query: 117 GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP 176
             +KEYLPI GLA F + +AEL  G ++   K  R  TVQG+SGTGSLR+ A  ++R+F 
Sbjct: 62  KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFK 121
Query: 177 GAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
            ++ V +  P+WGNH  IF DA +    YRYYDPKT  LDF G + DI   P  S ILLH
Sbjct: 122 FSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLH 181
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DP  EQW+++A V++++N + +FD+AYQGFASG ++ DA ++R F  +G++
Sbjct: 182 ACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGID 241
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV 355
           ++++QSY+ N+GLY ER GA  V+C  ++ A RV+SQLK L RPMYSNPP++GARI + +
Sbjct: 242 VVLSQSYAHNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLI 301
Query: 356 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKA 415
           +  P L  EW  E++ MA RI ++R +L  +L  K+ S  +W  I  QIGMF FTGL   
Sbjct: 302 LNTPELRKEWLVEVKGMADRIISMRTQLVSNLK-KEGSSHNWQHITDQIGMFCFTGLKPE 360
Query: 416 QSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
           Q + +T ++ +YMTKDGRIS+AG++ +   YLA AI
Sbjct: 361 QVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAI 396

>pdb|2CST|A Chain A, Crystal Structure Of The Closed Form Of Chicken Cytosolic Aspartate Aminotransferase At 1.9 Angstroms Resolution Length = 411

Iteration: 1
 Score =  372 bits (955), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/402 (46%), Positives = 255/402 (63%), Gaps = 8/402 (1%)
Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S F  V  APP  +  ++  F+ D D +K+NLGVGAYRT+E QP+VL VV+K E L+   
Sbjct: 3   SIFAAVPRAPPVAVFKLTADFREDGDSRKVNLGVGAYRTDEGQPWVLPVVRKVEQLIAGD 62
Query: 117 GE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
           G  N EYLPI GL  F    + +  G D+  + ++RV +VQGL GTG+LR+ A  + R++
Sbjct: 63  GSLNHEYLPILGLPEFRANASRIALGDDSPAIAQKRVGSVQGLGGTGALRIGAEFLRRWY 122
Query: 176 PG-----AKVLISSPTWGNHKNIFNDARVP-WSEYRYYDPKTVGLDFEGMIADIKAAPGG 229
            G       V +SSPTW NH ++F DA       YRY+D    GLD +G++ D++ AP  
Sbjct: 123 NGNNNTATPVYVSSPTWENHNSVFMDAGFKDIRTYRYWDAAKRGLDLQGLLDDMEKAPEF 182
Query: 230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF 289
           S  +LH CAHNPTG DPTP++W++IA V++ +   PFFD AYQGFASGSLD DA +VR F
Sbjct: 183 SIFILHACAHNPTGTDPTPDEWKQIAAVMKRRCLFPFFDSAYQGFASGSLDKDAWAVRYF 242
Query: 290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGA 349
            + G EL  AQS+SKN GLY ER+G ++VV    D   RV SQ++++ R  +SNPP  GA
Sbjct: 243 VSEGFELFCAQSFSKNFGLYNERVGNLSVVGKDEDNVQRVLSQMEKIVRTTWSNPPSQGA 302
Query: 350 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF 409
           RIVA  + +P LF EWK  ++ MA R+  +R +L   L +    G  W+ I  QIGMFSF
Sbjct: 303 RIVATTLTSPQLFAEWKDNVKTMADRVLLMRSELRSRLESLGTPGT-WNHITDQIGMFSF 361
Query: 410 TGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
           TGLN  Q + M  + H+Y+   GRI++ GL+    +Y+A +I
Sbjct: 362 TGLNPKQVEYMIKEKHIYLMASGRINMCGLTTKNLDYVAKSI 403

>pdb|1AAT|A Chain A, Oxoglutarate-Induced Conformational Changes In Cytosolic Aspartate Aminotransferase Length = 411

Iteration: 1
 Score =  370 bits (951), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/402 (45%), Positives = 256/402 (63%), Gaps = 8/402 (1%)
Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S F  V  APP  +  ++  F+ D D +K+NLGVGAYRT+E QP+VL VV+K E L+   
Sbjct: 3   SIFAAVPRAPPVAVFKLTADFREDGDSRKVNLGVGAYRTDEGQPWVLPVVRKVEQLIAGN 62
Query: 117 GE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
           G  N EYLPI GL  F    + +  G D+  + ++RV +VQGL GTG+LR+ A  + R++
Sbjct: 63  GSLNHEYLPILGLPEFRANASRIALGDDSPAIAQKRVGSVQGLGGTGALRIGAEFLRRWY 122
Query: 176 PG-----AKVLISSPTWGNHKNIFNDARVP-WSEYRYYDPKTVGLDFEGMIADIKAAPGG 229
            G       V +SSPTW NH ++F DA       YRY+D    GLD +G+++D++ AP  
Sbjct: 123 NGNNNTATPVYVSSPTWENHNSVFMDAGFKDIRTYRYWDAAKRGLDLQGLLSDMEKAPEF 182
Query: 230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF 289
           S  +LH CAHNPTG DPTP++W++IA V++ +   PFFD AYQGFASG+L+ DA +VR F
Sbjct: 183 SIFILHACAHNPTGTDPTPDEWKQIAAVMKRRCLFPFFDSAYQGFASGNLEKDAWAVRYF 242
Query: 290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGA 349
            + G EL  AQS+SKN GLY ER+G ++VV    D   RV SQ++++ R  +SNPP  GA
Sbjct: 243 VSEGFELFCAQSFSKNFGLYNERVGNLSVVGKDEDNVQRVLSQMEKIVRTTWSNPPSQGA 302
Query: 350 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF 409
           RIVA  + +P LF EWK  ++ MA R+  +R +L   L +    G  W+ I  QIGMFSF
Sbjct: 303 RIVATTLTSPQLFAEWKDNVKTMADRVLLMRSELRSRLESLGTPGT-WNHITDQIGMFSF 361
Query: 410 TGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
           TGLN  Q + M  + H+Y+   GRI++ GL+    +Y+A +I
Sbjct: 362 TGLNPKQVEYMIKEKHIYLMASGRINMCGLTTKNLDYVAKSI 403

>pdb|1AJS|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig Cytosolic Aspartate Aminotransferase And Its Complex With 2-Methylaspartate Length = 412

Iteration: 1
 Score =  368 bits (944), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/402 (45%), Positives = 250/402 (62%), Gaps = 8/402 (1%)
Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S F  V  A P  +  +   F+ D D +K+NLGVGAYRT++ QP+VL VV+K E  +   
Sbjct: 4   SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN 63
Query: 117 GE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
              N EYLPI GLA F    + L  G D+  L+E+RV  VQ L GTG+LR+ A  + R++
Sbjct: 64  SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWY 123
Query: 176 PGAK-----VLISSPTWGNHKNIFNDARVP-WSEYRYYDPKTVGLDFEGMIADIKAAPGG 229
            G       V +SSPTW NH  +F  A       YRY+D +  GLD +G ++D++ AP  
Sbjct: 124 NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEF 183
Query: 230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF 289
           S  +LH CAHNPTG DPTPEQW++IA V++ +   PFFD AYQGFASG+L+ DA ++R F
Sbjct: 184 SIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 243
Query: 290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGA 349
            + G EL  AQS+SKN GLY ER+G + VV    D   RV SQ++++ R  +SNPP  GA
Sbjct: 244 VSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGA 303
Query: 350 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF 409
           RIVA  + +P LF EW   ++ MA RI ++R +L   L A    G  W+ I  QIGMFSF
Sbjct: 304 RIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGT-WNHITDQIGMFSF 362
Query: 410 TGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
           TGLN  Q + + N+ H+Y+   GRI++ GL+    +Y+A +I
Sbjct: 363 TGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVATSI 404

>pdb|1AJR|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig Cytosolic Aspartate Aminotransferase And Its Complex With 2-Methylaspartate Length = 412

Iteration: 1
 Score =  366 bits (939), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/402 (45%), Positives = 249/402 (61%), Gaps = 8/402 (1%)
Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S F  V  A P  +  +   F+ D D +K+NLGVGAYRT++ QP+VL VV+K E  +   
Sbjct: 4   SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN 63
Query: 117 GE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
              N EYLPI GLA F    + L  G D+  L+E+RV  VQ L GTG+LR+ A  + R++
Sbjct: 64  SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWY 123
Query: 176 PGAK-----VLISSPTWGNHKNIFNDARVP-WSEYRYYDPKTVGLDFEGMIADIKAAPGG 229
            G       V +SSPTW NH  +F  A       YRY+D +  GLD +G ++D++ AP  
Sbjct: 124 NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEF 183
Query: 230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF 289
           S  +LH CAHNPTG DPTPEQW++IA V++ +   PFFD AYQGFASG+L+ DA ++R F
Sbjct: 184 SIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 243
Query: 290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGA 349
            + G EL  AQS+S N GLY ER+G + VV    D   RV SQ++++ R  +SNPP  GA
Sbjct: 244 VSEGFELFCAQSFSXNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGA 303
Query: 350 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF 409
           RIVA  + +P LF EW   ++ MA RI ++R +L   L A    G  W+ I  QIGMFSF
Sbjct: 304 RIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGT-WNHITDQIGMFSF 362
Query: 410 TGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
           TGLN  Q + + N+ H+Y+   GRI++ GL+    +Y+A +I
Sbjct: 363 TGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVATSI 404

>pdb|3II0|A Chain A, Crystal Structure Of Human Glutamate Oxaloacetate Transaminase 1 (Got1) Length = 422

Iteration: 1
 Score =  363 bits (931), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/392 (45%), Positives = 250/392 (63%), Gaps = 8/392 (2%)
Query: 67  PDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAEN-LMLERGENKEYLPI 125
           P  +  ++  F+ D D +K+NLGVGAYRT++  P+VL VVKK E  +  +   N EYLPI
Sbjct: 3   PVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPI 62
Query: 126 EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK-----V 180
            GLA F    + L  G D+  LKE+RV  VQ L GTG+LR+ A  + R++ G       V
Sbjct: 63  LGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPV 122
Query: 181 LISSPTWGNHKNIFNDARVP-WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH 239
            +SSPTW NH  +F+ A       YRY+D +  GLD +G + D++ AP  S ++LH CAH
Sbjct: 123 YVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAH 182
Query: 240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA 299
           NPTGIDPTPEQW++IA V++ +   PFFD AYQGFASG+L+ DA ++R F + G E   A
Sbjct: 183 NPTGIDPTPEQWKQIASVMKHRFLFPFFDSAYQGFASGNLERDAWAIRYFVSEGFEFFCA 242
Query: 300 QSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNP 359
           QS+SKN GLY ER+G + VV    +   +V SQ++++ R  +SNPP  GARIVA+ + NP
Sbjct: 243 QSFSKNFGLYNERVGNLTVVGKEPESILQVLSQMEKIVRITWSNPPAQGARIVASTLSNP 302
Query: 360 ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDN 419
            LF+EW   ++ MA RI  +R +L   L A    G  W+ I  QIGMFSFTGLN  Q + 
Sbjct: 303 ELFEEWTGNVKTMADRILTMRSELRARLEALKTPGT-WNHITDQIGMFSFTGLNPKQVEY 361
Query: 420 MTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
           + N+ H+Y+   GRI+++GL+    +Y+A +I
Sbjct: 362 LVNEKHIYLLPSGRINVSGLTTKNLDYVATSI 393

>pdb|4EU1|A Chain A, Structure Of A Mitochondrial Aspartate Aminotransferase From Trypanosoma Brucei Length = 409

Iteration: 1
 Score =  350 bits (899), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 172/399 (43%), Positives = 256/399 (64%), Gaps = 13/399 (3%)
Query: 63  TMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY 122
           +M  PDPILG+ + F+ D  ++K+NL +G YR +  QP+VL+ VK+A       G N +Y
Sbjct: 21  SMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQAT-----LGTNMDY 75
Query: 123 LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLI 182
            P+ G+A+F +   +L FG   + L++ R+A+ Q L GTG+LR+   L+ R+       I
Sbjct: 76  APVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCN-RI 134
Query: 183 SSPTWG--NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
             P  G  NH++IF  A +  + Y YYDP T GL+  GM+  +  AP GS IL+H CAHN
Sbjct: 135 YGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHN 194
Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTG+DPT + W ++ DVI+ +NHIPF D+AYQGFA+G LD DA   R        L+VAQ
Sbjct: 195 PTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQ 254
Query: 301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPA 360
           S+S N GLY  R GA+++  +S++ A R+ SQL  L RPMY+NPP++GA +V++++ +P 
Sbjct: 255 SFSXNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQ 314
Query: 361 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNM 420
           L   WK E++ M+ RI  VR++L   L A   S  DWS I RQ+GM ++TGL + Q + +
Sbjct: 315 LTALWKKELKQMSSRIAEVRKRLVSELKACG-SVHDWSHIERQVGMMAYTGLTREQVELL 373
Query: 421 TNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 459
            +++H+YMT +GR +++GL+    EY++ AI    HNV+
Sbjct: 374 RSEYHIYMTLNGRAAVSGLNSTNVEYVSQAI----HNVT 408

>pdb|1ASL|A Chain A, Crystal Structures Of Escherichia Coli Aspartate Aminotransferase In Two Conformations: Comparison Of An Unliganded Open And Two Liganded Closed Forms Length = 396

Iteration: 1
 Score =  350 bits (897), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 175/394 (44%), Positives = 247/394 (62%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP HGA +VA ++ N
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|4F5M|A Chain A, Wild-type E. Coli Aspartate Aminotransferase: A Template For The Interconversion Of Substrate Specificity And Activity To Tyrosine Aminotransferase By The Janus Algorithm. Length = 406

Iteration: 1
 Score =  348 bits (894), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 175/397 (44%), Positives = 247/397 (62%), Gaps = 2/397 (0%)
Query: 56  VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE 115
           V  FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE
Sbjct: 9   VGTFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLE 68
Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
               K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +  
Sbjct: 69  NETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNT 128
Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
              +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L H
Sbjct: 129 SVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFH 188
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
           GC HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    E
Sbjct: 189 GCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKE 247
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV 355
           L+VA SYS N GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP HGA +VA +
Sbjct: 248 LIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATI 307
Query: 356 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKA 415
           + N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K 
Sbjct: 308 LSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKE 366
Query: 416 QSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
           Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 367 QVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 403

>pdb|1IX6|A Chain A, Aspartate Aminotransferase Active Site Mutant V39f Length = 396

Iteration: 1
 Score =  348 bits (894), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 175/394 (44%), Positives = 247/394 (62%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGFYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP HGA +VA ++ N
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1ASF|A Chain A, The Structural Basis For The Reduced Activity Of The Y226f(Y225f) Active Site Mutant Of E. Coli Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  348 bits (893), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 174/394 (44%), Positives = 247/394 (62%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD A+QGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAFQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP HGA +VA ++ N
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1AIA|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate Aminotransferase K258h Lacking The Pyridoxal-5'-Phosphate Binding Lysine Residue Length = 396

Iteration: 1
 Score =  347 bits (891), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 174/394 (44%), Positives = 246/394 (62%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYS N GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP HGA +VA ++ N
Sbjct: 241 ASSYSHNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|2AAT|A Chain A, 2.8-Angstroms-Resolution Crystal Structure Of An Active-Site Mutant Of Aspartate Aminotransferase From Escherichia Coli Length = 396

Iteration: 1
 Score =  347 bits (891), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 174/394 (44%), Positives = 246/394 (62%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYS N GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP HGA +VA ++ N
Sbjct: 241 ASSYSANFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|2Q7W|A Chain A, Structural Studies Reveals The Inactivation Of E. Coli L-Aspartate Aminotransferase (S)-4,5-Amino-Dihydro-2-Thiophenecarboxylic Acid (Sadta) Via Two Mechanisms At Ph 6.0 Length = 396

Iteration: 1
 Score =  347 bits (891), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 174/394 (44%), Positives = 246/394 (62%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYS N GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP HGA +VA ++ N
Sbjct: 241 ASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1ASB|A Chain A, The Structural Basis For The Reduced Activity Of The D223a(D222a) Active Site Mutant Of E. Coli Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  347 bits (889), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 174/394 (44%), Positives = 246/394 (62%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P F  AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFAFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP HGA +VA ++ N
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1AAM|A Chain A, The Structural Basis For The Altered Substrate Specificity Of The R292d Active Site Mutant Of Aspartate Aminotransferase From E. Coli Length = 396

Iteration: 1
 Score =  346 bits (888), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 174/394 (44%), Positives = 246/394 (62%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K      YSNPP HGA +VA ++ N
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIDANYSNPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|3AAT|A Chain A, Activity And Structure Of The Active-Site Mutants R386y And R386f Of Escherichia Coli Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  346 bits (888), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 174/394 (44%), Positives = 246/394 (62%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP HGA +VA ++ N
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    G +++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGFVNVAGMTPDNMAPLCEAIV 393

>pdb|1IX8|A Chain A, Aspartate Aminotransferase Active Site Mutant V39fN194A Length = 396

Iteration: 1
 Score =  345 bits (886), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 174/394 (44%), Positives = 246/394 (62%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGFYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           H PTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HAPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP HGA +VA ++ N
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1B4X|A Chain A, Aspartate Aminotransferase From E. Coli, C191s Mutation, With Bound Maleate Length = 396

Iteration: 1
 Score =  345 bits (885), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 174/394 (44%), Positives = 246/394 (62%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HG  
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGSC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP HGA +VA ++ N
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1G4V|A Chain A, Aspartate Aminotransferase Active Site Mutant N194a/y225f Length = 396

Iteration: 1
 Score =  345 bits (885), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 173/394 (43%), Positives = 246/394 (62%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           H PTGIDPT EQW+ +A +  EK  +P FD A+QGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HAPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAFQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP HGA +VA ++ N
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1ARI|A Chain A, Aspartate Aminotransferase, W140h Mutant, Maleate Complex Length = 396

Iteration: 1
 Score =  345 bits (885), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 174/394 (44%), Positives = 246/394 (62%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+  NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSHPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP HGA +VA ++ N
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1QIS|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191f Mutation, With Bound Maleate Length = 396

Iteration: 1
 Score =  345 bits (884), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 174/394 (44%), Positives = 246/394 (62%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HG  
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGFC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP HGA +VA ++ N
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1QIR|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191y Mutation, With Bound Maleate Length = 396

Iteration: 1
 Score =  344 bits (883), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 174/394 (44%), Positives = 246/394 (62%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HG  
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGYC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP HGA +VA ++ N
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1QIT|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191w Mutation, With Bound Maleate Length = 396

Iteration: 1
 Score =  344 bits (883), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 174/394 (44%), Positives = 246/394 (62%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HG  
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGWC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP HGA +VA ++ N
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1BQA|A Chain A, Aspartate Aminotransferase P195a Mutant Length = 396

Iteration: 1
 Score =  344 bits (883), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 173/394 (43%), Positives = 245/394 (62%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HN TGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNATGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYS N GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP HGA +VA ++ N
Sbjct: 241 ASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1G7W|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR386L Length = 396

Iteration: 1
 Score =  343 bits (881), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 173/394 (43%), Positives = 245/394 (62%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           H PTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HAPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP HGA +VA ++ N
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    G +++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGLVNVAGMTPDNMAPLCEAIV 393

>pdb|1G4X|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR292L Length = 396

Iteration: 1
 Score =  343 bits (881), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 173/394 (43%), Positives = 245/394 (62%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           H PTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HAPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K      YSNPP HGA +VA ++ N
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAILANYSNPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1ARH|A Chain A, Aspartate Aminotransferase, Y225rR386A MUTANT Length = 396

Iteration: 1
 Score =  343 bits (880), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 173/394 (43%), Positives = 245/394 (62%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD A QGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFARQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP HGA +VA ++ N
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    G +++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGAVNVAGMTPDNMAPLCEAIV 393

>pdb|1AHY|A Chain A, Aspartate Aminotransferase Hexamutant Length = 396

Iteration: 1
 Score =  342 bits (876), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 173/394 (43%), Positives = 246/394 (62%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y  E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGLYYDETGKIPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   G+G+LR+AA  + +     
Sbjct: 62  TKLYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YS+PP HGA +VA ++ N
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSSPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|2D61|A Chain A, Aspartate Aminotransferase Mutant Ma With Maleic Acid Length = 396

Iteration: 1
 Score =  342 bits (876), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 172/394 (43%), Positives = 245/394 (62%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++  +AD    K++LG+G Y  E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITTAPADPILGLADLLRADERPGKIDLGMGVYNDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YS+PP HGA +VA ++ N
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRVNYSSPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|3ZZJ|A Chain A, Structure Of An Engineered Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  341 bits (875), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 173/394 (43%), Positives = 244/394 (61%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGQGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD A QGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAQQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K      YSNPP HGA +VA ++ N
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIYANYSNPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1BQD|A Chain A, Aspartate Aminotransferase P138aP195A DOUBLE MUTANT Length = 396

Iteration: 1
 Score =  341 bits (874), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 172/394 (43%), Positives = 244/394 (61%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+ +W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNASWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HN TGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNATGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYS N GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP HGA +VA ++ N
Sbjct: 241 ASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|2D5Y|A Chain A, Aspartate Aminotransferase Mutant Mc With Isovaleric Acid Length = 396

Iteration: 1
 Score =  341 bits (874), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 172/394 (43%), Positives = 244/394 (61%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITTAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YS+PP HGA +VA ++ N
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRVNYSSPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SF ++Q GMF F GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFTIKQNGMFFFGGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRLNVAGMTPDNLAPLCEAIV 393

>pdb|1G7X|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR292LR386L Length = 396

Iteration: 1
 Score =  340 bits (873), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 172/394 (43%), Positives = 244/394 (61%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           H PTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HAPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K      YSNPP HGA +VA ++ N
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAILANYSNPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    G +++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGLVNVAGMTPDNMAPLCEAIV 393

>pdb|4F5F|A Chain A, Structure Of Aspartate Aminotransferase Conversion To Tyrosine Aminotransferase: Chimera P1. Length = 406

Iteration: 1
 Score =  340 bits (872), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 173/397 (43%), Positives = 243/397 (61%), Gaps = 2/397 (0%)
Query: 56  VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE 115
           V  FE +T AP DPILG+++ F+AD    K++LGVG Y+ E  +  VL  VKKAE  +LE
Sbjct: 9   VGTFENITAAPADPILGLADLFRADERPGKVDLGVGVYKDETGKTPVLTSVKKAEQYLLE 68
Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
               K YL ++GL  F + T ELLFG  ++++ ++R  T Q   G+G+LR+ A  + +  
Sbjct: 69  NETTKTYLGLDGLPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVGADFLAKNT 128
Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
              +V +S+P+W NHK IFN A +   EY YYD +   LDF+ +I  +  A  G  +L H
Sbjct: 129 SVKRVWVSNPSWPNHKAIFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFH 188
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
           GC HNPTGIDPT EQW+ +A +  EK  +P  D AYQGF  G L+ DA  +R FA    E
Sbjct: 189 GCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLIDFAYQGFGRG-LEEDAEGLRAFAAMHKE 247
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV 355
           L+VA SYS N GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP HGA +VA +
Sbjct: 248 LIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATI 307
Query: 356 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKA 415
           + N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K 
Sbjct: 308 LSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKE 366
Query: 416 QSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
           Q   +  ++ VY    GRI++AG++      L +AI+
Sbjct: 367 QVLRLREEFGVYAVASGRINVAGMTPDNMAPLCEAIV 403

>pdb|1TOE|A Chain A, Unliganded Structure Of Hexamutant + A293d Mutant Of E. Coli Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  340 bits (871), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 172/394 (43%), Positives = 245/394 (62%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y  E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGLYYDETGKIPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   G+G+LR+AA  + +     
Sbjct: 62  TKLYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYS N GLY ER+GA  +V + S+   R  SQ+K   R  YS+PP HGA +VA ++ N
Sbjct: 241 ASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRDNYSSPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEK-GANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|2D66|A Chain A, Aspartate Aminotransferase Mutant Mab Length = 396

Iteration: 1
 Score =  338 bits (866), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 171/394 (43%), Positives = 243/394 (61%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++  +AD    K++LG+G Y  E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITTAPADPILGLADLLRADERPGKIDLGMGVYNDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P W  HK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPGWPTHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YS+PP HGA +VA ++ N
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRVNYSSPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|4F5J|A Chain A, Rational Design And Directed Evolution For Conversion Of Substrate Specificity From E.coli Aspartate Aminotransferase To Tyrosine Aminotransferase: Mutant P5. Length = 406

Iteration: 1
 Score =  337 bits (864), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 171/397 (43%), Positives = 243/397 (61%), Gaps = 2/397 (0%)
Query: 56  VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE 115
           V  FE +T AP DPILG+++ F+AD    K++LGVG Y+ E  +  VL  VKKAE  +LE
Sbjct: 9   VGTFENITAAPADPILGLADLFRADERPGKVDLGVGVYKDETGKTPVLTSVKKAEQYLLE 68
Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
               K YL ++GL  F + T ELLFG  ++++ ++R  T Q   G+G+LR+AA  + +  
Sbjct: 69  NETTKTYLGLDGLPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNT 128
Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
              +V +S+P+W NHK IFN A +   EY YYD +   LDF+ +I  +  A  G  +L H
Sbjct: 129 SVKRVWVSNPSWPNHKAIFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFH 188
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
           GC HNPTG DPT EQW+ +A +  EK  +P  D+AYQGF  G L+ DA  +R FA    E
Sbjct: 189 GCCHNPTGADPTLEQWQTLAQLSVEKGWLPLIDIAYQGFGRG-LEEDAEGLRAFAAMHKE 247
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV 355
           L+VA S S N GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP HGA +VA +
Sbjct: 248 LIVASSCSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATI 307
Query: 356 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKA 415
           + N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K 
Sbjct: 308 LSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKE 366
Query: 416 QSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
           Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 367 QVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 403

>pdb|4F5I|A Chain A, Substrate Specificity Conversion Of E. Coli Pyridoxal-5'-phosphate Dependent Aspartate Aminotransferase To Tyrosine Aminotransferase: Chimera P4. Length = 406

Iteration: 1
 Score =  336 bits (862), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 171/397 (43%), Positives = 243/397 (61%), Gaps = 2/397 (0%)
Query: 56  VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE 115
           V  FE +T AP DPILG+++ F+AD    K++LGVG Y+ E  +  V+  VKKAE  +LE
Sbjct: 9   VGTFENITAAPADPILGLADLFRADERPGKVDLGVGVYKDETGKTPVMTSVKKAEQYLLE 68
Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
               K YL I+G+  F + T ELLFG  ++++ ++R  T Q   G+G+LR+AA  + +  
Sbjct: 69  NETTKTYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNT 128
Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
              +V +S+PTW NHK IFN A +   EY YYD +   LDF+ +I  +  A  G  +L H
Sbjct: 129 SVKRVWVSNPTWPNHKAIFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFH 188
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
           GC HNPTGIDPT EQW+ +A +  EK  +P  D+AYQGF  G L+ DA  +R FA    E
Sbjct: 189 GCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLIDIAYQGFGRG-LEEDAEGLRAFAAMHKE 247
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV 355
           L+VA S S N  LY ER+GA  +V + S+   R  SQ+K   R  YS+PP HGA +VA +
Sbjct: 248 LIVASSCSXNFSLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSSPPAHGASVVATI 307
Query: 356 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKA 415
           + N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K 
Sbjct: 308 LSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKE 366
Query: 416 QSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
           Q   +  ++ VY    GRI++AG++      L +AI+
Sbjct: 367 QVLRLREEFGVYAVASGRINVAGMTPDNMAPLCEAIV 403

>pdb|1CZC|A Chain A, Aspartate Aminotransferase Mutant Atb17139S142N WITH GLUTARIC ACID Length = 396

Iteration: 1
 Score =  336 bits (862), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 170/394 (43%), Positives = 242/394 (61%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++  +AD    K++LG+G Y  E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITTAPADPILGLADLLRADERPGKIDLGMGVYNDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVR 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYSKN GLY ER+G   +V + S+   R  SQ+K   R  YS+PP HGA +VA ++GN
Sbjct: 241 ASSYSKNFGLYNERVGTCTLVAADSETVDRAFSQMKAAIRVNYSSPPAHGASVVATILGN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SF ++Q GMF F GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEK-GANRDFSFTIKQNGMFFFGGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRLNVAGMTPDNLAPLCEAIV 393

>pdb|4F5H|A Chain A, Intercoversion Of Substrate Specificity: E. Coli Aspatate Aminotransferase To Tyrosine Aminotransferase: Chimera P3. Length = 406

Iteration: 1
 Score =  335 bits (859), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 169/397 (42%), Positives = 243/397 (61%), Gaps = 2/397 (0%)
Query: 56  VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE 115
           V  FE +T AP DPILG+++ F+AD    K++LG+G Y+ E  +  V+  VKKAE  +LE
Sbjct: 9   VGTFENITAAPADPILGLADLFRADERPGKVDLGIGVYKDETGKTPVMTSVKKAEQYLLE 68
Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
               K YL ++GL  F + T ELLFG  ++++ ++R  T Q   G+G+LR+AA  + +  
Sbjct: 69  NETTKTYLGLDGLPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNT 128
Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
              +V +S+P+W NHK IFN A +   EY YYD +   LDF+ +I  +  A  G  +L H
Sbjct: 129 SVKRVWVSNPSWPNHKAIFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFH 188
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
           GC HNPTG DPT EQW+ +A +  EK  +P  D AYQGF  G L+ DA  +R FA    E
Sbjct: 189 GCCHNPTGADPTLEQWQTLAQLSVEKGWLPLIDFAYQGFGRG-LEEDAEGLRAFAAMHKE 247
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV 355
           L+VA SYS N GLY ER+GA  +V + S+   R  SQ+K   R  YS+PP HGA +VA +
Sbjct: 248 LIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSSPPAHGASVVATI 307
Query: 356 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKA 415
           + N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K 
Sbjct: 308 LSNDALRAIWEQELTDMRQRIQRLRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKE 366
Query: 416 QSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
           Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 367 QVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 403

>pdb|4F5G|A Chain A, Rational Design And Directed Evolution Of E. Coli Apartate Aminotransferase To Tyrosine Aminotransferase: Mutant P2. Length = 406

Iteration: 1
 Score =  335 bits (858), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 169/397 (42%), Positives = 242/397 (60%), Gaps = 2/397 (0%)
Query: 56  VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE 115
           V  FE +T AP DPILG+++ F+AD    K++LGVG Y+ E  +  VL  VKKAE  +LE
Sbjct: 9   VGTFENITAAPADPILGLADLFRADERPGKVDLGVGVYKDETGKTPVLTSVKKAEQYLLE 68
Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
               K YL ++GL  F + T ELLFG  ++++ ++R  T Q   G+G+LR+AA  + +  
Sbjct: 69  NETTKTYLGLDGLPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNT 128
Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
              +V +S+P+W NHK IFN A +   EY YYD +   LDF+ +I  +  A  G  +L H
Sbjct: 129 SVKRVWVSNPSWPNHKAIFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFH 188
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
           GC HNPTG DPT EQW+ +A +  EK  +P  D+AYQGF  G L+ DA  +R FA    E
Sbjct: 189 GCCHNPTGADPTLEQWQTLAQLSVEKGWLPLIDIAYQGFGRG-LEEDAEGLRAFAAMHKE 247
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV 355
           L+VA S S N GLY ER+GA  +V + S+   R   Q+K   R  YSNPP HGA +VA +
Sbjct: 248 LIVASSCSXNFGLYNERVGACTLVAADSETVDRAFGQMKAAIRANYSNPPAHGASVVATI 307
Query: 356 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKA 415
           + N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SF+++Q GMFSF+GL K 
Sbjct: 308 LSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFVIKQNGMFSFSGLTKE 366
Query: 416 QSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
           Q   +  ++ VY    GR+++AG++      L +AI+
Sbjct: 367 QVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 403

>pdb|4F5K|A Chain A, Substrate Specificity Conversion Of Aspartate Aminotransferase To Tyrosine Aminotransferase By The Janus Algorithm: Chimera P6. Length = 406

Iteration: 1
 Score =  334 bits (856), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 170/397 (42%), Positives = 241/397 (60%), Gaps = 2/397 (0%)
Query: 56  VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE 115
           V  FE +T AP DPILG+++ F+AD    K++LGVG Y+ E  +  V+  VKKAE  +LE
Sbjct: 9   VGTFENITAAPADPILGLADLFRADERPGKVDLGVGVYKDETGKTPVMTSVKKAEQYLLE 68
Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
               K YL ++GL  F + T ELLFG  ++++ ++R  T Q   G+G+LR+AA  + +  
Sbjct: 69  NETTKTYLGLDGLPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNT 128
Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
              +V +S+PTW NHK IFN A +   EY YYD +   LDF+ +I  +  A  G  +L H
Sbjct: 129 SVKRVWVSNPTWPNHKAIFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFH 188
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
           GC HNPTG DPT EQW+ +A +  EK  +P  D+AYQGF  G L+ DA  +R FA    E
Sbjct: 189 GCCHNPTGADPTLEQWQTLAQLSVEKGWLPLIDIAYQGFGRG-LEEDAEGLRAFAAMHKE 247
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV 355
           L+VA S S N  LY ER+GA  +V + S+   R   Q+K   R  YSNPP HGA +VA +
Sbjct: 248 LIVASSCSXNFSLYNERVGACTLVAADSETVDRAFGQMKAAIRANYSNPPAHGASVVATI 307
Query: 356 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKA 415
           + N AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K 
Sbjct: 308 LSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKE 366
Query: 416 QSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
           Q   +  ++ VY    GRI++AG++      L +AI+
Sbjct: 367 QVLRLREEFGVYAVASGRINVAGMTPDNMAPLCEAIV 403

>pdb|1TOJ|A Chain A, Hydrocinnamic Acid-Bound Structure Of Srhept Mutant Of E. Coli Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  333 bits (855), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 167/394 (42%), Positives = 242/394 (61%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T    DPILG+++ F+AD    K++LG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITATTADPILGLADLFRADERPGKIDLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   G+G+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYS N  LY ER+GA  +V + S+   R   Q+K   R  YS+PP HGA +VA ++ N
Sbjct: 241 ASSYSXNFALYNERVGACTLVAADSETVDRAFGQMKAAIRANYSSPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|4H51|A Chain A, Crystal Structure Of A Putative Aspartate Aminotransferase From Leishmania Major Friedlin Length = 420

Iteration: 1
 Score =  333 bits (854), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 182/416 (43%), Positives = 252/416 (60%), Gaps = 13/416 (3%)
Query: 49  SMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKK 108
           +  A     R++ +    PD I  +++   A     K NL +GAYR E+ +PY L VV+K
Sbjct: 11  TQAAMTTAERWQKIQAQAPDVIFDLAKR-AAAAKGPKANLVIGAYRDEQGRPYPLRVVRK 69
Query: 109 AENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAA 168
           AE L+L+   + EYLPI G   F     ++++G  N+V  E  VA VQ LSGTG++ L A
Sbjct: 70  AEQLLLDMNLDYEYLPISGYQPFIDEAVKIIYG--NTVELENLVA-VQTLSGTGAVSLGA 126
Query: 169 ALIERYFPG--AKVLISSPTWGNHKNIFNDARVPW---SEYRYYDPKTVGLDFEGMIADI 223
            L+ R F      + +S PTW NH  +   A   W     Y YYDPKTV L+FEGM  DI
Sbjct: 127 KLLTRVFDAETTPIYLSDPTWPNHYGVVKAA--GWKNICTYAYYDPKTVSLNFEGMKKDI 184
Query: 224 KAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA 283
            AAP GS  +LH CAHNPTG+DP+ EQW +IA ++  K+H  FFD AYQG+ASGSLD DA
Sbjct: 185 LAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDA 244
Query: 284 SSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSN 343
            + RLFA RG+E+L+AQS+S N+GLY+ER G ++++       A VKS +  L R  Y+ 
Sbjct: 245 YAARLFARRGIEVLLAQSFSXNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTC 304
Query: 344 PPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ 403
           PP HGAR+   ++ N  L  EW+AE+  MA RI+ +R+ ++D L      G  W  ++ Q
Sbjct: 305 PPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGS-WEHVINQ 363
Query: 404 IGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 459
           IGMFSF GL+KAQ +   N  ++++T  GR ++AGL+      LA  I D+  NV+
Sbjct: 364 IGMFSFLGLSKAQCEYCQNH-NIFITVSGRANMAGLTHETALMLAQTINDAVRNVN 418

>pdb|1TOG|A Chain A, Hydrocinnamic Acid-Bound Structure Of Srhept + A293d Mutant Of E. Coli Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  333 bits (854), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 167/394 (42%), Positives = 242/394 (61%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T    DPILG+++ F+AD    K++LG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITATTADPILGLADLFRADERPGKIDLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   G+G+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYS N  LY ER+GA  +V + S+   R   Q+K   R  YS+PP HGA +VA ++ N
Sbjct: 241 ASSYSXNFALYNERVGACTLVAADSETVDRAFGQMKAAIRDNYSSPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEK-GANRDFSFIIKQNGMFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIV 393

>pdb|1YOO|A Chain A, Aspartate Aminotransferase Mutant Atb17 With Isovaleric Acid Length = 396

Iteration: 1
 Score =  333 bits (853), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 169/394 (42%), Positives = 240/394 (60%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++  +AD    K++LG+G Y  E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITTAPADPILGLADLLRADERPGKIDLGMGVYNDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVR 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P W  HK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPGWPTHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYSKN GLY ER+G   +V + S+   R  SQ+K   R  YS+PP HGA +VA ++GN
Sbjct: 241 ASSYSKNFGLYNERVGTCTLVAADSETVDRAFSQMKAAIRVNYSSPPAHGASVVATILGN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SF ++Q GMF F GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEK-GANRDFSFTIKQNGMFFFGGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRLNVAGMTPDNLAPLCEAIV 393

>pdb|2D64|A Chain A, Aspartate Aminotransferase Mutant Mabc With Isovaleric Acid Length = 396

Iteration: 1
 Score =  332 bits (850), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 169/394 (42%), Positives = 240/394 (60%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++  +AD    K++LG+G Y  E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITTAPADPILGLADLLRADERPGKIDLGMGVYNDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P W  HK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPGWPTHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YS+PP HGA +VA ++ N
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRVNYSSPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SF ++Q GMF F GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG-ANRDFSFTIKQNGMFFFGGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG++      L +AI+
Sbjct: 360 RLREEFGVYAVASGRLNVAGMTPDNLAPLCEAIV 393

>pdb|1YAA|A Chain A, Aspartate Aminotransferase From Saccharomyces Cerevisiae Cytoplasm Length = 412

Iteration: 1
 Score =  325 bits (832), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 166/405 (40%), Positives = 234/405 (57%), Gaps = 17/405 (4%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-ERG 117
           F  + + PPD + G+ + +  D    K++LG+GAYR +  +P+VL  VK AE L+  +  
Sbjct: 5   FNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSS 64
Query: 118 ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG 177
            N EYL I GL +     A+++FG  +  L+E RV +VQ LSGTG+L ++A    ++FP 
Sbjct: 65  YNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPD 124
Query: 178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237
             V +S PTW NH  IF +  +  + Y Y+  +T  LD  G +  I+ AP GS  +LH C
Sbjct: 125 KLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSC 184
Query: 238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME-- 295
           AHNPTG+DPT EQW +I D I  KNHI  FD AYQGFA+G LD DA +VRL    G+E  
Sbjct: 185 AHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRL----GVEKL 240
Query: 296 -----LLVAQSYSKNLGLYAERIGAMNVVCS----SSDLAARVKSQLKRLARPMYSNPPV 346
                + V QS++KN G+Y ER+G  ++  +    +  +   V SQL ++ R   SNPP 
Sbjct: 241 STVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPA 300
Query: 347 HGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGM 406
           +GA+IVA ++  P L ++W  +M  M+ RI  +R  L D L      G +W  I+ Q GM
Sbjct: 301 YGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPG-NWDHIVNQCGM 359
Query: 407 FSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
           FSFTGL       +     VY+   GR S+AGL+    EY+A AI
Sbjct: 360 FSFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVAKAI 404

>pdb|3MEB|A Chain A, Structure Of Cytoplasmic Aspartate Aminotransferase From Giardia Lamblia Length = 448

Iteration: 1
 Score =  319 bits (817), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 171/420 (40%), Positives = 247/420 (58%), Gaps = 20/420 (4%)
Query: 55  NVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML 114
           ++S F G   +PPD IL ++  + ADT+ KK+NLGVGAYR E  +P++L  VK+AE ++ 
Sbjct: 21  SMSVFSGFPASPPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIIS 80
Query: 115 E--RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIE 172
                 NKEY P+ G   F +    L+FG D+   +E R+A+ Q LSGTGSL +    + 
Sbjct: 81  SDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLH 140
Query: 173 RYFPGAKVLISSPTWGNHKNI----FNDARVPWSEYRYYDPK-TVGLDFEGMIADIKAAP 227
            + P A+  + S TW NH  I    FN  +VP+ EY Y      + +DF     DI++AP
Sbjct: 141 LWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAP 200
Query: 228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR 287
             S  L H CAHNP+GID T  QW+++  +++EK HI FFD AYQGFA+GS + DA +VR
Sbjct: 201 EKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVR 260
Query: 288 LFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD--------LAARVKSQLKRLARP 339
           +F   G+E+LVAQS+SKN GLY ERIG ++VV +  +        L+A + S +    R 
Sbjct: 261 MFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRK 320
Query: 340 MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGK---- 395
            +S   +HGA IV  +V +  L   +   ++ M+ RI  +R  L  SL+ +   G     
Sbjct: 321 TWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKG 380
Query: 396 DWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTK-DGRISLAGLSLAKCEYLADAIIDS 454
            W  IL  IGMF+FTGL     D +  KW +Y+ K  GR+S+ GL+ + C+Y+A+AI D+
Sbjct: 381 TWDHILTAIGMFTFTGLTPEHVDYLKEKWSIYLVKAGGRMSMCGLTESNCDYVAEAIHDA 440

>pdb|3TAT|A Chain A, Tyrosine Aminotransferase From E. Coli Length = 397

Iteration: 1
 Score =  314 bits (804), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 163/394 (41%), Positives = 240/394 (60%), Gaps = 3/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEE-LQPYVLDVVKKAENLMLERG 117
           F+ V     DPIL + E FK D    K+NL +G Y  E+ + P +  V +    L  +  
Sbjct: 2   FQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPH 61
Query: 118 ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG 177
               YLP+EGL  +    A LLFGAD+ VLK+QRVAT+Q L G+G+L++ A  ++RYFP 
Sbjct: 62  GASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPE 121
Query: 178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237
           + V +S PTW NH  IF  A    S Y +YD  T G+ F  ++A +K  P  S +LLH C
Sbjct: 122 SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPC 181
Query: 238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297
            HNPTG D T +QW+ + ++++ +  IPF D+AYQGF +G ++ DA ++R  A+ G+  L
Sbjct: 182 CHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAG-MEEDAYAIRAIASAGLPAL 240
Query: 298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVG 357
           V+ S+SK   LY ER+G ++V+C  ++ A RV  QLK   R  YS+PP  GA++VA V+ 
Sbjct: 241 VSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLN 300
Query: 358 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQS 417
           + AL   W AE+E M  RI  +RQ+L   LS  +   +++ ++L Q GMFS+TGL+ AQ 
Sbjct: 301 DEALKASWLAEVEEMRTRILAMRQELVKVLS-TEMPERNFDYLLNQRGMFSYTGLSAAQV 359
Query: 418 DNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
           D +  ++ VY+   GR+ +AGL+ A  + +A A 
Sbjct: 360 DRLREEFGVYLIASGRMCVAGLNTANVQRVAKAF 393

>pdb|4F4E|A Chain A, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase From Burkholderia Pseudomallei Covalently Bound To Pyridoxal Phosphate Length = 420

Iteration: 1
 Score =  314 bits (804), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 169/397 (42%), Positives = 248/397 (62%), Gaps = 2/397 (0%)
Query: 55  NVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML 114
           ++S F  V +AP DPILG++EAF ADT   K+NLGVG Y  E+ +  +L  V+ AE   +
Sbjct: 21  SMSLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARV 80
Query: 115 ERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY 174
           E G  + YLPI+G+AA++    +LL G D+ ++   RV T Q L GTG+L++ A  +   
Sbjct: 81  EAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTL 140
Query: 175 FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILL 234
            P AKV IS P+W NH+ +F+ A      Y YYD KT G++F+GM+A +     G+ ++L
Sbjct: 141 NPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVL 200
Query: 235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM 294
           H C HNPTG+D    QW ++ +V++ +  +PF D+AYQGF   S++ DA++VRLFA   +
Sbjct: 201 HACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGE-SIEADAAAVRLFAAANL 259
Query: 295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVAN 354
            + V+ S+S +  LY ER+GA++++  S D AARV SQLKR+ R  YSNPP HG  IVA 
Sbjct: 260 NVFVSSSFSXSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAA 319
Query: 355 VVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNK 414
           V+ +P L   W  E+  M  RI+ +R  L + L A     +D+SFI  Q GMFS++GL  
Sbjct: 320 VLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIE-RDFSFINAQRGMFSYSGLTS 378
Query: 415 AQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
           AQ D +  ++ +Y    GRI +A L+    + +A+AI
Sbjct: 379 AQVDRLREEFGIYAVSTGRICVAALNTRNLDVVANAI 415

>pdb|4EFF|A Chain A, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase From Burkholderia Pseudomallei Length = 420

Iteration: 1
 Score =  314 bits (804), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 170/397 (42%), Positives = 249/397 (62%), Gaps = 2/397 (0%)
Query: 55  NVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML 114
           ++S F  V +AP DPILG++EAF ADT   K+NLGVG Y  E+ +  +L  V+ AE   +
Sbjct: 21  SMSLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARV 80
Query: 115 ERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY 174
           E G  + YLPI+G+AA++    +LL G D+ ++   RV T Q L GTG+L++ A  +   
Sbjct: 81  EAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTL 140
Query: 175 FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILL 234
            P AKV IS P+W NH+ +F+ A      Y YYD KT G++F+GM+A +     G+ ++L
Sbjct: 141 NPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVL 200
Query: 235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM 294
           H C HNPTG+D    QW ++ +V++ +  +PF D+AYQGF   S++ DA++VRLFA   +
Sbjct: 201 HACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGE-SIEADAAAVRLFAAANL 259
Query: 295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVAN 354
            + V+ S+SK+  LY ER+GA++++  S D AARV SQLKR+ R  YSNPP HG  IVA 
Sbjct: 260 NVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAA 319
Query: 355 VVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNK 414
           V+ +P L   W  E+  M  RI+ +R  L + L A     +D+SFI  Q GMFS++GL  
Sbjct: 320 VLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIE-RDFSFINAQRGMFSYSGLTS 378
Query: 415 AQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
           AQ D +  ++ +Y    GRI +A L+    + +A+AI
Sbjct: 379 AQVDRLREEFGIYAVSTGRICVAALNTRNLDVVANAI 415

>pdb|3FSL|A Chain A, Crystal Structure Of Tyrosine Aminotransferase Tripple Mutant (P181q, R183g,A321k) From Escherichia Coli At 2.35 A Resolution Length = 397

Iteration: 1
 Score =  311 bits (798), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 162/394 (41%), Positives = 239/394 (60%), Gaps = 3/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEE-LQPYVLDVVKKAENLMLERG 117
           F+ V     DPIL + E FK D    K+NL +G Y  E+ + P +  V +    L  +  
Sbjct: 2   FQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPH 61
Query: 118 ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG 177
               YLP+EGL  +    A LLFGAD+ VLK+QRVAT+Q L G+G+L++ A  ++RYFP 
Sbjct: 62  GASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPE 121
Query: 178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237
           + V +S PTW NH  IF  A    S Y +YD  T G+ F  ++A +K    GS +LLH C
Sbjct: 122 SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPC 181
Query: 238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297
            HNPTG D T +QW+ + ++++ +  IPF D+AYQGF +G ++ DA ++R  A+ G+  L
Sbjct: 182 CHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAG-MEEDAYAIRAIASAGLPAL 240
Query: 298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVG 357
           V+ S+SK   LY ER+G ++V+C  ++ A RV  QLK   R  YS+PP  GA++VA V+ 
Sbjct: 241 VSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLN 300
Query: 358 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQS 417
           + AL   W  E+E M  RI  +RQ+L   LS  +   +++ ++L Q GMFS+TGL+ AQ 
Sbjct: 301 DEALKASWLKEVEEMRTRILAMRQELVKVLST-EMPERNFDYLLNQRGMFSYTGLSAAQV 359
Query: 418 DNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
           D +  ++ VY+   GR+ +AGL+ A  + +A A 
Sbjct: 360 DRLREEFGVYLIASGRMCVAGLNTANVQRVAKAF 393

>pdb|3UAK|A Chain A, Crystal Structure Of De Novo Designed Cysteine Esterase Ech14, Northeast Structural Genomics Consortium Target Or54 Length = 406

Iteration: 1
 Score =  291 bits (746), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 161/394 (40%), Positives = 230/394 (58%), Gaps = 2/394 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPI G+++ F+AD    K+NLG+  Y  E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPIYGLADLFRADERPGKINLGLALYYDETGKIPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   G G+LR+AA  + +     
Sbjct: 62  TKLYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGHGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V + +P+    K++FN A +   EY YYD +   LDF+ +I  +  A  G  +L  GC 
Sbjct: 122 RVWVYNPSSNCSKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFTGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P F   YQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFTFFYQGFARG-LEEDAEGLRAFAAXHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYSKN GLY E +GA  +V + S+   R  SQ K   R  YS+PP HGA +VA ++ N
Sbjct: 241 ASSYSKNFGLYNESVGACTLVAADSETVDRAFSQXKAAIRDNYSSPPAHGASVVATILSN 300
Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+     RI+  RQ   ++L  K  + +D+SFI++Q G FSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDXRQRIQRXRQLFVNTLQEK-GANRDFSFIIKQNGXFSFSGLTKEQVL 359
Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAII 452
            +  ++ VY    GR+++AG +      L +AI+
Sbjct: 360 RLREEFGVYAVASGRVNVAGXTPDNXAPLCEAIV 393

>pdb|1AY4|A Chain A, Aromatic Amino Acid Aminotransferase Without Substrate Length = 394

Iteration: 1
 Score =  281 bits (720), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 153/388 (39%), Positives = 218/388 (56%), Gaps = 7/388 (1%)
Query: 67  PDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIE 126
           PD IL +   F+AD  + K++LGVG Y+       ++  V  AE  MLE    K Y  + 
Sbjct: 10  PDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLS 69
Query: 127 GLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPT 186
           G   F K   EL+ G     LK +  AT+  + GTG+LR A  L     P  +V +S PT
Sbjct: 70  GEPEFQKAMGELILG---DGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPT 126
Query: 187 WGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDP 246
           W NH +I N   +P   YRY+D +T G+DFEGM AD+ AA  G  +LLHGC HNPTG + 
Sbjct: 127 WPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANL 186
Query: 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL 306
           T +QW +IA ++++   +P  D+AYQGF  G L+ DA+  RL A+R  E+L+A S SKN 
Sbjct: 187 TLDQWAEIASILEKTGALPLIDLAYQGFGDG-LEEDAAGTRLIASRIPEVLIAASCSKNF 245
Query: 307 GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWK 366
           G+Y ER G +  +C+ +      +  +  L R  YS PP HGA+IV+ V+  P L  +W 
Sbjct: 246 GIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWM 305
Query: 367 AEMEMMAGRIKNVRQKLFDSLSAKDKSGKD-WSFILRQIGMFSFTGLNKAQSDNMTNKWH 425
           AE+E +   +  +R++L   L  +D SG D + F+    GMFS  G    Q   +  ++ 
Sbjct: 306 AELEAVRSGMLRLREQLAGEL--RDLSGSDRFGFVAEHRGMFSRLGATPEQVKRIKEEFG 363
Query: 426 VYMTKDGRISLAGLSLAKCEYLADAIID 453
           +YM  D RI++AGL+      LA AII+
Sbjct: 364 IYMVGDSRINIAGLNDNTIPILARAIIE 391

>pdb|3K7Y|A Chain A, Aspartate Aminotransferase Of Plasmodium Falciparum Length = 405

Iteration: 1
 Score =  214 bits (546), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 208/387 (53%), Gaps = 5/387 (1%)
Query: 68  DPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEG 127
           D IL  +  FK DT E+K+NL +G    ++   ++ D V  A+ L+ E  + K YL   G
Sbjct: 14  DNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADKLVTENYKEKPYLLGNG 73
Query: 128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTW 187
              F+ +T  L+FG ++  ++++++ T+Q + GTG++ +    + +      + +++P +
Sbjct: 74  TEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFL-KMLNVETLYVTNPPY 132
Query: 188 GNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPT 247
            NH N+            ++D   + ++++  + D++  P GS ++L    +NP  ++  
Sbjct: 133 INHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIE 192
Query: 248 PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG 307
            + +++I +++  K H+  FD+AYQGF   +L+ D   +R F  + +   V QS+SKN+ 
Sbjct: 193 EKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMS 252
Query: 308 LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA 367
           LY ER GA+++VC + +    V + L  + R  YS+P +H  RI+  ++ N  L   W  
Sbjct: 253 LYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIK 312
Query: 368 EMEMMAGRIKNVRQKLFDSLSAKDKS---GKDWSFILRQIGMFSFTGLNKAQSDNMTNKW 424
           E+  ++ RI N R   F+ L    K      DW+   +Q G+FSF  L    ++++    
Sbjct: 313 ELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLAKIAEHLKTH- 371
Query: 425 HVYMTKDGRISLAGLSLAKCEYLADAI 451
           H+Y+  +GRI+++G++    +Y+AD I
Sbjct: 372 HIYIINNGRINVSGITKNNVDYIADKI 398

>pdb|3RQ1|A Chain A, Crystal Structure Of Aminotransferase Class I And Ii From Veillonella Parvula Length = 418

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 137/324 (42%), Gaps = 20/324 (6%)
Query: 78  KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE 137
           K +  E  +N  +GA   EE     L  VK+ E L L   E+  Y PI G+  F     +
Sbjct: 33  KENGRENVVNGTLGAIHDEEGNLVFLKTVKE-EYLSLSDSEHVGYAPIAGIPDFLCAAEK 91
Query: 138 LLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF-PGAKVLISSPTWGNHKNIFND 196
             FG   +   E  + ++    GTG +     LI  Y  PG +VL +   WG ++ I +D
Sbjct: 92  ECFG---NFRPEGHIRSIATAGGTGGIH---HLIHNYTEPGDEVLTADWYWGAYRVICSD 145
Query: 197 ARVPWSEYRYYDPKTV--GLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKI 254
                  Y  +D         F+  + ++ A      ++ +   +NPTG     + W+ I
Sbjct: 146 TGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSI 205
Query: 255 ADVIQE------KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL--VAQSYSKNL 306
            + +++       N I   DVAY  + SG  D   +    F+    E+L  V  S SK  
Sbjct: 206 LNFLKDLVAIGRNNVIIGIDVAYLDY-SGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGF 264
Query: 307 GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWK 366
             Y +R+GA   +    ++A       K  +R  +SN      R  AN+V +PA F E++
Sbjct: 265 TXYGQRVGAXIGISDDEEIADEFFEVNKSTSRATWSNICRPAXRTXANIVADPAKFKEYE 324
Query: 367 AEMEMMAGRIKNVRQKLFDSLSAK 390
           AE       I++ R  +F   +A+
Sbjct: 325 AERNCYYQLIRD-RADIFKQEAAQ 347

>pdb|4EMY|A Chain A, Crystal Structure Of Aminotransferase From Anaerococcus Prevotii Dsm 20548. Length = 413

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 103/244 (42%), Gaps = 26/244 (10%)
Query: 115 ERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY 174
           +R     Y PIEG   + K+  + LFG       E  ++ +    GTG++R  +A+    
Sbjct: 68  DRSHIASYAPIEGEKDYRKIVIDTLFGP---YKPEGYISAIATPGGTGAIR--SAIFSYL 122
Query: 175 FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY-DPKTVGLDF------EGMIADIKAAP 227
             G  ++     W  ++ I  +    +  + ++ D     +D       EG+    + A 
Sbjct: 123 DEGDPLICHDYYWAPYRKICEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRDSDRIAS 182
Query: 228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP------FFDVAYQGFASGSLDN 281
                L++   +NPTG   + E+W+++   ++EK            DVAY  FA G  D 
Sbjct: 183 -----LINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFA-GDGDQ 236
Query: 282 DASSVRLFAT--RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARP 339
                  F+   R + ++VA S SK+   Y  R GA   + SS ++    ++ L   AR 
Sbjct: 237 QRKFFEKFSNLPRNLFVVVAFSXSKSHTAYGLRSGAAVGISSSKEIIEEFEASLAHSARC 296
Query: 340 MYSN 343
            +SN
Sbjct: 297 NWSN 300

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	459
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	0.0
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	0.0
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	0.0
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	0.0
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	0.0
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	0.0
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	0.0
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	0.0
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	0.0
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	0.0
3rq1_A	418	Aminotransferase class I and II; structural genomi	0.0
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	0.0
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	1e-149
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	3e-07
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	3e-06
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	3e-06
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	3e-05
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	3e-05
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	3e-05
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	6e-05
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	1e-04
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	5e-04
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	5e-04
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	9e-04

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* Length = 420

 Score =  670 bits (1732), Expect = 0.0
 Identities = 169/407 (41%), Positives = 248/407 (60%), Gaps = 2/407 (0%)

Query: 47  RVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVV 106
                   ++S F  V +AP DPILG++EAF ADT   K+NLGVG Y  E+ +  +L  V
Sbjct: 13  EAQTQGPGSMSLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAV 72

Query: 107 KKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRL 166
           + AE   +E G  + YLPI+G+AA++    +LL G D+ ++   RV T Q L GTG+L++
Sbjct: 73  RDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKI 132

Query: 167 AAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA 226
            A  +    P AKV IS P+W NH+ +F+ A      Y YYD KT G++F+GM+A +   
Sbjct: 133 GADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGY 192

Query: 227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV 286
             G+ ++LH C HNPTG+D    QW ++ +V++ +  +PF D+AYQGF    ++ DA++V
Sbjct: 193 EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGES-IEADAAAV 251

Query: 287 RLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPV 346
           RLFA   + + V+ S+SK+  LY ER+GA++++  S D AARV SQLKR+ R  YSNPP 
Sbjct: 252 RLFAAANLNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPT 311

Query: 347 HGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGM 406
           HG  IVA V+ +P L   W  E+  M  RI+ +R  L + L A     +D+SFI  Q GM
Sbjct: 312 HGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAA-GIERDFSFINAQRGM 370

Query: 407 FSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID 453
           FS++GL  AQ D +  ++ +Y    GRI +A L+    + +A+AI  
Sbjct: 371 FSYSGLTSAQVDRLREEFGIYAVSTGRICVAALNTRNLDVVANAIAA 417

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* Length = 401

 Score =  666 bits (1720), Expect = 0.0
 Identities = 201/398 (50%), Positives = 278/398 (69%), Gaps = 2/398 (0%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S +  V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL+ V+KAE ++  +
Sbjct: 2   SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK 61

Query: 117 GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP 176
             +KEYLPI GLA F + +AEL  G ++   K  R  TVQG+SGTGSLR+ A  ++R+F 
Sbjct: 62  KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFK 121

Query: 177 GAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
            ++ V +  P+WGNH  IF DA +    YRYYDPKT  LDF G + DI   P  S ILLH
Sbjct: 122 FSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLH 181

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DP  EQW+++A V++++N + +FD+AYQGFASG ++ DA ++R F  +G++
Sbjct: 182 ACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGID 241

Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV 355
           ++++QSY+KN+GLY ER GA  V+C  ++ A RV+SQLK L RPMYSNPP++GARI + +
Sbjct: 242 VVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLI 301

Query: 356 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKA 415
           +  P L  EW  E++ MA RI ++R +L  +L  +  S  +W  I  QIGMF FTGL   
Sbjct: 302 LNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKE-GSSHNWQHITDQIGMFCFTGLKPE 360

Query: 416 QSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID 453
           Q + +T ++ +YMTKDGRIS+AG++ +   YLA AI  
Sbjct: 361 QVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQ 398

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} PDB: 3tat_A* Length = 397

 Score =  658 bits (1699), Expect = 0.0
 Identities = 164/396 (41%), Positives = 239/396 (60%), Gaps = 3/396 (0%)

Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAEN-LMLERG 117
           F+ V     DPIL + E FK D    K+NL +G Y  E+     L  V +AE  L  +  
Sbjct: 2   FQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPH 61

Query: 118 ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG 177
               YLP+EGL  +    A LLFGAD+ VLK+QRVAT+Q L G+G+L++ A  ++RYFP 
Sbjct: 62  GASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPE 121

Query: 178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237
           + V +S PTW NH  IF  A    S Y +YD  T G+ F  ++A +K    GS +LLH C
Sbjct: 122 SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPC 181

Query: 238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297
            HNPTG D T +QW+ + ++++ +  IPF D+AYQGF +G ++ DA ++R  A+ G+  L
Sbjct: 182 CHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAG-MEEDAYAIRAIASAGLPAL 240

Query: 298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVG 357
           V+ S+SK   LY ER+G ++V+C  ++ A RV  QLK   R  YS+PP  GA++VA V+ 
Sbjct: 241 VSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLN 300

Query: 358 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQS 417
           + AL   W  E+E M  RI  +RQ+L   LS +    +++ ++L Q GMFS+TGL+ AQ 
Sbjct: 301 DEALKASWLKEVEEMRTRILAMRQELVKVLSTE-MPERNFDYLLNQRGMFSYTGLSAAQV 359

Query: 418 DNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID 453
           D +  ++ VY+   GR+ +AGL+ A  + +A A   
Sbjct: 360 DRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAA 395

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... Length = 396

 Score =  657 bits (1697), Expect = 0.0
 Identities = 174/395 (44%), Positives = 246/395 (62%), Gaps = 2/395 (0%)

Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61

Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121

Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181

Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240

Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYS N GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP HGA +VA ++ N
Sbjct: 241 ASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300

Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEK-GANRDFSFIIKQNGMFSFSGLTKEQVL 359

Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID 453
            +  ++ VY    GR+++AG++      L +AI+ 
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVA 394

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* Length = 394

 Score =  656 bits (1696), Expect = 0.0
 Identities = 149/395 (37%), Positives = 214/395 (54%), Gaps = 5/395 (1%)

Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
              +    PD IL +   F+AD  + K++LGVG Y+       ++  V  AE  MLE   
Sbjct: 2   LGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETET 61

Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K Y  + G   F K   EL+ G     LK +  AT+  + GTG+LR A  L     P  
Sbjct: 62  TKTYAGLSGEPEFQKAMGELILGDG---LKSETTATLATVGGTGALRQALELARMANPDL 118

Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S PTW NH +I N   +P   YRY+D +T G+DFEGM AD+ AA  G  +LLHGC 
Sbjct: 119 RVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCC 178

Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTG + T +QW +IA ++++   +P  D+AYQGF  G L+ DA+  RL A+R  E+L+
Sbjct: 179 HNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDG-LEEDAAGTRLIASRIPEVLI 237

Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A S SKN G+Y ER G +  +C+ +      +  +  L R  YS PP HGA+IV+ V+  
Sbjct: 238 AASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTT 297

Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
           P L  +W AE+E +   +  +R++L   L         + F+    GMFS  G    Q  
Sbjct: 298 PELRADWMAELEAVRSGMLRLREQLAGELRDL-SGSDRFGFVAEHRGMFSRLGATPEQVK 356

Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID 453
            +  ++ +YM  D RI++AGL+      LA AII+
Sbjct: 357 RIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIE 391

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} Length = 405

 Score =  655 bits (1693), Expect = 0.0
 Identities = 110/405 (27%), Positives = 211/405 (52%), Gaps = 5/405 (1%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
                +     D IL  +  FK DT E+K+NL +G    ++   ++ D V  A+ L+ E 
Sbjct: 3   KLLSSLENIEVDNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADKLVTEN 62

Query: 117 GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP 176
            + K YL   G   F+ +T  L+FG ++  ++++++ T+Q + GTG++ +    ++    
Sbjct: 63  YKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV 122

Query: 177 GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG 236
              + +++P + NH N+            ++D   + ++++  + D++  P GS ++L  
Sbjct: 123 -ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQI 181

Query: 237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL 296
             +NP  ++   + +++I +++  K H+  FD+AYQGF   +L+ D   +R F  + +  
Sbjct: 182 SCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAF 241

Query: 297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVV 356
            V QS+SKN+ LY ER GA+++VC + +    V + L  + R  YS+P +H  RI+  ++
Sbjct: 242 SVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLL 301

Query: 357 GNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK---SGKDWSFILRQIGMFSFTGLN 413
            N  L   W  E+  ++ RI N R   F+ L    K      DW+   +Q G+FSF  L 
Sbjct: 302 NNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLL 361

Query: 414 KAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNV 458
              ++++    H+Y+  +GRI+++G++    +Y+AD I  S   +
Sbjct: 362 AKIAEHLKTH-HIYIINNGRINVSGITKNNVDYIADKICLSLSQI 405

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} Length = 409

 Score =  654 bits (1690), Expect = 0.0
 Identities = 167/406 (41%), Positives = 255/406 (62%), Gaps = 7/406 (1%)

Query: 49  SMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKK 108
             +  +        +M  PDPILG+ + F+ D  ++K+NL +G YR +  QP+VL+ VK+
Sbjct: 7   HHMGTLEAQTQGPGSMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQ 66

Query: 109 AENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAA 168
           A       G N +Y P+ G+A+F +   +L FG   + L++ R+A+ Q L GTG+LR+  
Sbjct: 67  AT-----LGTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGG 121

Query: 169 ALIERYFPGAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP 227
            L+ R+      +      + NH++IF  A +  + Y YYDP T GL+  GM+  +  AP
Sbjct: 122 DLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAP 181

Query: 228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR 287
            GS IL+H CAHNPTG+DPT + W ++ DVI+ +NHIPF D+AYQGFA+G LD DA   R
Sbjct: 182 EGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPR 241

Query: 288 LFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVH 347
                   L+VAQS+SKN GLY  R GA+++  +S++ A R+ SQL  L RPMY+NPP++
Sbjct: 242 HLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLY 301

Query: 348 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF 407
           GA +V++++ +P L   WK E++ M+ RI  VR++L   L A   S  DWS I RQ+GM 
Sbjct: 302 GAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKAC-GSVHDWSHIERQVGMM 360

Query: 408 SFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID 453
           ++TGL + Q + + +++H+YMT +GR +++GL+    EY++ AI +
Sbjct: 361 AYTGLTREQVELLRSEYHIYMTLNGRAAVSGLNSTNVEYVSQAIHN 406

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 Length = 412

 Score =  650 bits (1679), Expect = 0.0
 Identities = 163/411 (39%), Positives = 235/411 (57%), Gaps = 9/411 (2%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-E 115
           + F  + + PPD + G+ + +  D    K++LG+GAYR +  +P+VL  VK AE L+  +
Sbjct: 3   TLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHND 62

Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
              N EYL I GL +     A+++FG  +  L+E RV +VQ LSGTG+L ++A    ++F
Sbjct: 63  SSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFF 122

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
           P   V +S PTW NH  IF +  +  + Y Y+  +T  LD  G +  I+ AP GS  +LH
Sbjct: 123 PDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLH 182

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR--- 292
            CAHNPTG+DPT EQW +I D I  KNHI  FD AYQGFA+G LD DA +VRL   +   
Sbjct: 183 SCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLST 242

Query: 293 GMELLVAQSYSKNLGLYAERIGAMNVVCS----SSDLAARVKSQLKRLARPMYSNPPVHG 348
              + V QS++KN G+Y ER+G  ++  +    +  +   V SQL ++ R   SNPP +G
Sbjct: 243 VSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYG 302

Query: 349 ARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFS 408
           A+IVA ++  P L ++W  +M  M+ RI  +R  L D L     +  +W  I+ Q GMFS
Sbjct: 303 AKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKL-GTPGNWDHIVNQCGMFS 361

Query: 409 FTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 459
           FTGL       +     VY+   GR S+AGL+    EY+A AI +     +
Sbjct: 362 FTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVAKAIDEVVRFYA 412

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* Length = 412

 Score =  648 bits (1675), Expect = 0.0
 Identities = 183/404 (45%), Positives = 251/404 (62%), Gaps = 8/404 (1%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S F  V  A P  +  +   F+ D D +K+NLGVGAYRT++ QP+VL VV+K E  +   
Sbjct: 4   SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN 63

Query: 117 GE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
              N EYLPI GLA F    + L  G D+  L+E+RV  VQ L GTG+LR+ A  + R++
Sbjct: 64  SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWY 123

Query: 176 -----PGAKVLISSPTWGNHKNIFNDARVP-WSEYRYYDPKTVGLDFEGMIADIKAAPGG 229
                    V +SSPTW NH  +F  A       YRY+D +  GLD +G ++D++ AP  
Sbjct: 124 NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEF 183

Query: 230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF 289
           S  +LH CAHNPTG DPTPEQW++IA V++ +   PFFD AYQGFASG+L+ DA ++R F
Sbjct: 184 SIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 243

Query: 290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGA 349
            + G EL  AQS+SKN GLY ER+G + VV    D   RV SQ++++ R  +SNPP  GA
Sbjct: 244 VSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGA 303

Query: 350 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF 409
           RIVA  + +P LF EW   ++ MA RI ++R +L   L A  K+   W+ I  QIGMFSF
Sbjct: 304 RIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEAL-KTPGTWNHITDQIGMFSF 362

Query: 410 TGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID 453
           TGLN  Q + + N+ H+Y+   GRI++ GL+    +Y+A +I +
Sbjct: 363 TGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVATSIHE 406

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} Length = 448

 Score =  637 bits (1645), Expect = 0.0
 Identities = 171/427 (40%), Positives = 245/427 (57%), Gaps = 20/427 (4%)

Query: 47  RVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVV 106
                   ++S F G   +PPD IL ++  + ADT+ KK+NLGVGAYR E  +P++L  V
Sbjct: 13  EAQTQGPGSMSVFSGFPASPPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAV 72

Query: 107 KKAENLMLE--RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSL 164
           K+AE ++       NKEY P+ G   F +    L+FG D+   +E R+A+ Q LSGTGSL
Sbjct: 73  KEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSL 132

Query: 165 RLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARVPWSEYRYYDPKT-VGLDFEGM 219
            +    +  + P A+  + S TW NH  I    FN  +VP+ EY Y      + +DF   
Sbjct: 133 HIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNT 192

Query: 220 IADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL 279
             DI++AP  S  L H CAHNP+GID T  QW+++  +++EK HI FFD AYQGFA+GS 
Sbjct: 193 KKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSF 252

Query: 280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS--------SDLAARVKS 331
           + DA +VR+F   G+E+LVAQS+SKN GLY ERIG ++VV +           L+A + S
Sbjct: 253 EADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVS 312

Query: 332 QLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD 391
            +    R  +S   +HGA IV  +V +  L   +   ++ M+ RI  +R  L  SL+ + 
Sbjct: 313 GMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRK 372

Query: 392 ----KSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTK-DGRISLAGLSLAKCEY 446
                S   W  IL  IGMF+FTGL     D +  KW +Y+ K  GR+S+ GL+ + C+Y
Sbjct: 373 TPGPGSKGTWDHILTAIGMFTFTGLTPEHVDYLKEKWSIYLVKAGGRMSMCGLTESNCDY 432

Query: 447 LADAIID 453
           +A+AI D
Sbjct: 433 VAEAIHD 439

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} Length = 418

 Score =  575 bits (1485), Expect = 0.0
 Identities = 90/426 (21%), Positives = 162/426 (38%), Gaps = 30/426 (7%)

Query: 52  AAVNVSRFEGVTMAPPDPILGVSEAFKA----DTDEKKLNLGVGAYRTEELQPYVLDVVK 107
           A  +V+          D I   +   +A    +  E  +N  +GA   EE     L  VK
Sbjct: 3   AMTSVAAKHAKGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVK 62

Query: 108 KAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLA 167
           +    + +  E+  Y PI G+  F     +  FG       E  + ++    GTG +   
Sbjct: 63  EEYLSLSDS-EHVGYAPIAGIPDFLCAAEKECFGNFR---PEGHIRSIATAGGTGGIHHL 118

Query: 168 AALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKT--VGLDFEGMIADIKA 225
                   PG +VL +   WG ++ I +D       Y  +D         F+  + ++ A
Sbjct: 119 IHNYTE--PGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAA 176

Query: 226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE------KNHIPFFDVAYQGFASGSL 279
                 ++ +   +NPTG     + W+ I + +++       N I   DVAY  ++    
Sbjct: 177 KQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGE-K 235

Query: 280 DNDASSVRLFATRGMELL--VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLA 337
           D   +    F+    E+L  V  S SK   +Y +R+GAM  +    ++A       K  +
Sbjct: 236 DEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTS 295

Query: 338 RPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDW 397
           R  +SN      R +AN+V +PA F E++AE       I++         +         
Sbjct: 296 RATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQ-----VGL 350

Query: 398 SFILRQIGMFSFTGLNKAQSD-NMTNKWH---VYMTKDGRISLAGLSLAKCEYLADAIID 453
             +  + G F     + A +      K H   + +    RI+  G+   +   LA+ I +
Sbjct: 351 PMLPYRGGFFITIPTDSANAICEELKKEHIYVIALANGIRIAACGIPKCQMTGLAEKIYN 410

Query: 454 SYHNVS 459
           +  ++ 
Sbjct: 411 AMKSLG 416

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430

 Score =  431 bits (1110), Expect = e-149
 Identities = 67/408 (16%), Positives = 143/408 (35%), Gaps = 31/408 (7%)

Query: 61  GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK 120
           G  M  P  IL    +  A+      N  +G    ++        +    N  L   E  
Sbjct: 29  GQNMFYPKGIL----SQSAEAKSTTYNATIGMATNKD-GKMFASSLDAMFND-LTPDEIF 82

Query: 121 EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV 180
            Y P +G+     +  + +   +  +  +     +   + T  L L   L         +
Sbjct: 83  PYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVN--QDDTI 140

Query: 181 LISSPTWGNHKNIFNDAR-VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH 239
           L+    WGN+K +FN         Y  +D        + ++  +++      I++    +
Sbjct: 141 LLPEHNWGNYKLVFNTRNGANLQTYPIFDKDG-HYTTDSLVEALQSYNKDKVIMILNYPN 199

Query: 240 NPTGIDPTPEQWEKIADVIQE-----KNHIPFFDVAYQGFASGSLDND--ASSVRLFATR 292
           NPTG  PT ++   I + I+         I   D AY G     +      +++    + 
Sbjct: 200 NPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSN 259

Query: 293 GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIV 352
            +  +     +K    +  R+G M    S       +++++K L R   S+ P+     V
Sbjct: 260 AILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAV 319

Query: 353 ANVVGNPALFD-EWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTG 411
            +V+ N   FD E +  ++ +  R +  ++ ++            W       G F    
Sbjct: 320 KHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYH-----SHWQAYDFNSGYFMAIK 374

Query: 412 LNKAQSDNMT----NKWHVYM----TKDGRISLAGLSLAKCEYLADAI 451
           ++    + +     +K+ + +      D RI+ + +      ++ D+I
Sbjct: 375 VHDVDPEALRKHLIDKYSIGVIALNATDIRIAFSCVEKDDIPHVFDSI 422

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 72.6 bits (177), Expect = 1e-13
 Identities = 63/438 (14%), Positives = 129/438 (29%), Gaps = 121/438 (27%)

Query: 75  EAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKV 134
           + F  +         +   +TE+ QP            M     ++ Y   +  A +N V
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQP-------SMMTRMYIEQRDRLYNDNQVFAKYN-V 131

Query: 135 TAELLFGADNSVLKEQRVA---TVQGLSGTGSLRLAAAL-----IERYFPGAKVLISSPT 186
           +    +      L E R A    + G+ G+G   +A  +     ++              
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF--------- 182

Query: 187 WGNHKNIFNDARVPWSEYRYYD-PKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGID 245
                 IF      W   +  + P+TV    + ++  I               H+     
Sbjct: 183 -----KIF------WLNLKNCNSPETVLEMLQKLLYQIDPN------WTSRSDHSSNIKL 225

Query: 246 PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN--DASSVRLFA--------TRGME 295
                  ++  +++ K +     V         L N  +A +   F         TR  +
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLV---------LLNVQNAKAWNAFNLSCKILLTTRFKQ 276

Query: 296 L---LVAQSYSK------NLGLY---AERIGAMNVVCSSSDLAARVKSQLKRLARPMYSN 343
           +   L A + +       ++ L     + +    + C   DL   V +          +N
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT----------TN 326

Query: 344 PPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG--------- 394
           P    + I  ++    A +D WK    +   ++  + +   + L   +            
Sbjct: 327 PRRL-SIIAESIRDGLATWDNWK---HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 395 KD-----------WSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSL-- 441
                        W  +++   M     +NK    ++  K      K+  IS+  + L  
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVV---VNKLHKYSLVEKQ----PKESTISIPSIYLEL 435

Query: 442 -AKCEYLAD---AIIDSY 455
             K E       +I+D Y
Sbjct: 436 KVKLENEYALHRSIVDHY 453

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 32/162 (19%), Positives = 59/162 (36%), Gaps = 19/162 (11%)

Query: 240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG--FASGSLDNDASSVRLFA---TRGM 294
           NPTG     E    I    + +  +   D  YQ   +      +    +          +
Sbjct: 248 NPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDL 307

Query: 295 ELLVAQSYSKNLGLYAE---RIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARI 351
            L+  QS SK  G Y E   R G   +    +  +A V+ Q+ ++A  +     + G  +
Sbjct: 308 PLVSYQSVSK--GYYGECGKRGGYFEI----TGFSAPVREQIYKIAS-VNLCSNITGQIL 360

Query: 352 VANVVGNPALFDE----WKAEMEMMAGRIKNVRQKLFDSLSA 389
            + V+  P   DE    +KAE + +   +    + L  + + 
Sbjct: 361 ASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNK 402

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 38/203 (18%), Positives = 72/203 (35%), Gaps = 14/203 (6%)

Query: 73  VSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFN 132
                + + D K ++LG+G   TE L  Y+ D + KA   +  R     Y   +G  A  
Sbjct: 59  RKAHQEKNPDAKIISLGIGD-TTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALR 117

Query: 133 KVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK- 191
           +  A   +G       E  +    G S     R+             V +  P++  +  
Sbjct: 118 EAVASTFYGHAGRAADE--IFISDG-SKCDIARIQMMFG----SKPTVAVQDPSYPVYVD 170

Query: 192 -NIFNDARVPWSEYRYYDPKTVGLDFE-GMIADIKAAPGGSFILLHGCA-HNPTGIDPTP 248
            ++        +   +   + +  + +     D+  A     I    C+ +NPTG   T 
Sbjct: 171 TSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKAKRTDIIFF--CSPNNPTGAAATR 228

Query: 249 EQWEKIADVIQEKNHIPFFDVAY 271
            Q  ++ +  ++   I  +D AY
Sbjct: 229 AQLTELVNFARKNGSILVYDAAY 251

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 37/164 (22%), Positives = 59/164 (35%), Gaps = 22/164 (13%)

Query: 240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ------GFASGSLDNDASSVRLFATRG 293
           NPTG   + +  E +     E+      D  YQ           S       +    +  
Sbjct: 246 NPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSN 305

Query: 294 MELLVAQSYSKNLGLYAE---RIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGAR 350
           +EL    S SK  G   E   R G M V+    +    +K QL +L       PPV G +
Sbjct: 306 VELASFHSTSK--GYMGECGYRGGYMEVINLHPE----IKGQLVKLLSVRLC-PPVSG-Q 357

Query: 351 IVANVVGNPAL-----FDEWKAEMEMMAGRIKNVRQKLFDSLSA 389
              ++V NP +     F+++  E E + G +    +   D  + 
Sbjct: 358 AAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQ 401

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 35/222 (15%), Positives = 74/222 (33%), Gaps = 28/222 (12%)

Query: 170 LIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG 229
            +       + +I +P +  +      +      +            + ++  +      
Sbjct: 91  TVASGLKPRRAMIVTPGFAEYGRALAQSGCEIRRW-SLREADGWQLTDAILEALTPDLDC 149

Query: 230 SFILLHGCA-HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL 288
            F+    C  +NPTG+ P     + IAD  +  N     D A+  F      ++   +  
Sbjct: 150 LFL----CTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFI----PHETGFIPA 201

Query: 289 FATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYS-NPPVH 347
                  + V +S +K   +   R+G +  V S     AR    ++R  +  +S N    
Sbjct: 202 LKDNP-HIWVLRSLTKFYAIPGLRLGYL--VNSDDAAMAR----MRR-QQMPWSVN---- 249

Query: 348 GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA 389
               +A + G  AL D   A  +     ++    + + +L  
Sbjct: 250 ---ALAALAGEVALQDS--AWQQATWHWLREEGARFYQALCQ 286

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 33/193 (17%), Positives = 59/193 (30%), Gaps = 53/193 (27%)

Query: 142 ADNSVLKEQRVATVQGLS------GTGS---LRLAA-ALIERYFPGAKVLISSPTWGNHK 191
           A +  L+ +    + G          GS   L     A       G ++    P+     
Sbjct: 65  ASSQKLR-EVAGELYGFDPSWIIMANGSDEVLNNLIRAFAA---EGEEIGYVHPS----- 115

Query: 192 NIFNDARVPWSEYRYY------DPKTVGL--DFEGMIADIKAAPGGSFILLHGCA--HNP 241
             +       S Y           +T GL  DF       +      F+        + P
Sbjct: 116 --Y-------SYYGTLAEVQGARVRTFGLTGDFRIAGFPERYEGKVFFL-----TTPNAP 161

Query: 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS 301
            G     E  +++A        +   D  Y  FA      +++++ L       ++V ++
Sbjct: 162 LGPSFPLEYIDELARRCAG---MLVLDETYAEFA------ESNALELVRRHE-NVVVTRT 211

Query: 302 YSKNLGLYAERIG 314
            SK+  L   RIG
Sbjct: 212 LSKSYSLAGMRIG 224

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 33/228 (14%), Positives = 70/228 (30%), Gaps = 51/228 (22%)

Query: 170 LIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY------DPKTVGLDFEGMIADI 223
            I + F G++ LI+ P+       F       +EY         +      + E +    
Sbjct: 82  QIAQAFRGSRSLIAIPS-------F-------AEYEDACRMYEHEVCFYPSN-EDIGEAD 126

Query: 224 KAAPGGSFILLHGCA-HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDND 282
            +     ++    C  +NP G      +  ++ +     +     D +Y  F       +
Sbjct: 127 FSNMDFCWL----CNPNNPDGRLLQRTEILRLLN--DHPDTTFVLDQSYVSFT----TEE 176

Query: 283 ASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYS 342
                    R   L++  S+S   G+   RIG    + ++ D   RV +         ++
Sbjct: 177 VIRPADIKGRK-NLVMVYSFSHAYGIPGLRIGY---IVANKDFMKRVAA-----FSTPWA 227

Query: 343 -NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA 389
            N        +A       L     A+  +   + +        +L+ 
Sbjct: 228 VN-------ALAIEAAKFILIHP--AQFTLPIRKWQRNTVDFITALNR 266

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 52/302 (17%), Positives = 92/302 (30%), Gaps = 40/302 (13%)

Query: 124 PIEGLAAFNKVTAELL-FGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF--PGAKV 180
            + GL +   + A  L   A+N ++       +QGL  T +L          +     K+
Sbjct: 68  GVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKM 127

Query: 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPK--TVGLDFEGMIAD-----IKAAPGGSFIL 233
           +++ P +  H  +           +    +  TV +  +G   D         P    IL
Sbjct: 128 IVTVPGYDRHFLLL----------QTLGFELLTVDMQSDGPDVDAVERLAGTDPSVKGIL 177

Query: 234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFF-DVAYQ--GFASGSLDNDASSVRLFA 290
                 NP G   + E+  ++A +         F D AY+             + V L  
Sbjct: 178 FVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLAR 237

Query: 291 TRGMELLVAQ--SYSKNL--GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPV 346
             G         S SK    G     +G +    SS D        L +        P  
Sbjct: 238 DAGYPDRAFVFASTSKITFAGA---GLGFV---ASSEDNIRW----LSKYLGAQSIGPNK 287

Query: 347 HGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDW-SFILRQIG 405
                    +         +  M   A  I    + + + L A+   G ++ ++ L + G
Sbjct: 288 VEQARHVKFLTEYP--GGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGG 345

Query: 406 MF 407
            F
Sbjct: 346 YF 347

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 37/225 (16%), Positives = 77/225 (34%), Gaps = 53/225 (23%)

Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYY------DPKTV------GLDFEGMIADIKAA 226
           K+LI  P+       +       +EY                     +D+E +I      
Sbjct: 100 KILIIVPS-------Y-------AEYEINAKKHGVSVVFSYLDENMCIDYEDII---SKI 142

Query: 227 PGGSFILLHGCA-HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASS 285
                +++     +NP G     E++  +  + +EK      D A+  F     D  +S 
Sbjct: 143 DDVDSVII--GNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTG---DPSSSF 197

Query: 286 VRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYS-NP 344
           V         L + ++ +K   +   R G    + ++ ++AA++K+      +  ++ N 
Sbjct: 198 VGEIKNYS-CLFIIRAMTKFFAMPGIRFGYG--ITNNKEIAAKIKA-----KQNPWNIN- 248

Query: 345 PVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA 389
                   A +     L D     +E     IK  R++  + L+ 
Sbjct: 249 ------CFAEMAAINCLKD--TNYIEESLLWIKKERKRFIEELNK 285

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 34/163 (20%), Positives = 60/163 (36%), Gaps = 27/163 (16%)

Query: 160 GTGSLRLAAALIERYF-PGAKVLISSPTWGNHKNI--FNDAR---VPWSEYRYYDPKTVG 213
             GS  +   L++ +  PG   L   P++  H  +          V              
Sbjct: 98  ANGSNEILQQLLQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRGA-------DFR 150

Query: 214 LDFEGMIADIKA-APGGSFILLHGCA-HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAY 271
           +D +  + +I+A  P   F+       +NPTG   + +  E+I +V      I   D AY
Sbjct: 151 IDMDVALEEIRAKQPDIVFV----TTPNNPTGDVTSLDDVERIINVAPG---IVIVDEAY 203

Query: 272 QGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIG 314
             F+        S+  L      +L+V+++ SK       R+G
Sbjct: 204 AEFSP-----SPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLG 241

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 33/231 (14%), Positives = 60/231 (25%), Gaps = 44/231 (19%)

Query: 122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF------ 175
           Y  + G+A   ++ AE L      +  +  VA            ++ +            
Sbjct: 72  YGGLLGIADIRELWAEAL-----GLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPW 126

Query: 176 ---PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK--TVGLDFEGMIAD----IKAA 226
                 K L   P +  H  I            ++  +   V +  EG        +   
Sbjct: 127 SAEEKVKWLCPVPGYDRHFTIT----------EHFGFEMINVPMTDEGPDMGVVRELVKD 176

Query: 227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFF-DVAYQ--GFASGSLDNDA 283
           P    +       NPTG+  + +   ++A++           D AY      S       
Sbjct: 177 PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTL-SDEFPIVH 235

Query: 284 SSVRLFATRGMELLVAQ--SYSKNL--GLYAERIGAMNVVCSSSDLAARVK 330
           + +      G         S SK    G     +       SS +      
Sbjct: 236 NVIEFAQAAGNPNRFWFMSSTSKITHAGS---GVSFF---ASSKENIEWYA 280

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427

 Score = 40.5 bits (95), Expect = 9e-04
 Identities = 43/298 (14%), Positives = 85/298 (28%), Gaps = 47/298 (15%)

Query: 122 YLPIEGLAAFNKVTAELL-------FGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY 174
           Y  ++G+    ++ A+LL          D S L               +  +     E  
Sbjct: 74  YGGLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKE-- 131

Query: 175 FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK--TVGLDFEGMIAD----IKAAPG 228
               K +   P +  H +I             +  +  +V ++ +G   D    +   P 
Sbjct: 132 -ETVKWICPVPGYDRHFSIT----------ERFGFEMISVPMNEDGPDMDAVEELVKNPQ 180

Query: 229 GSFILLHGCAHNPTGIDPTPEQWEKIADVI-QEKNHIPFFDVAYQGFA-SGSLDNDASSV 286
              + +     NPTG   T +  ++++ +     +    +D AY     +         V
Sbjct: 181 VKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIV 240

Query: 287 RLFATRGMELLVAQ--SYSKNL--GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYS 342
            L    G         S SK    G     +       +S++            A     
Sbjct: 241 GLGEAAGNPNRFWAFTSTSKITLAGA---GVSFF---LTSAENRKW----YTGHAGIRGI 290

Query: 343 NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA--KDKSGKDWS 398
            P        A   G+    +  +A M   A  +     K+ + L +   +     W+
Sbjct: 291 GPNKVNQLAHARYFGD---AEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWT 345

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	459
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	100.0
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	100.0
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	100.0
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	100.0
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	100.0
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	100.0
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	100.0
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	100.0
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	100.0
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	100.0
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	100.0
3rq1_A	418	Aminotransferase class I and II; structural genomi	100.0
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	100.0
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	100.0
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	100.0
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	100.0
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	100.0
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	100.0
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	100.0
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	100.0
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	100.0
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	100.0
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	100.0
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	100.0
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	100.0
3ele_A	398	Amino transferase; RER070207001803, structural gen	100.0
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	100.0
3nra_A	407	Aspartate aminotransferase; structural genomics, j	100.0
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	100.0
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	100.0
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	100.0
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	100.0
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	100.0
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	100.0
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	100.0
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	100.0
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	100.0
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	100.0
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	100.0
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	100.0
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	100.0
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	100.0
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	100.0
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	100.0
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	100.0
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	100.0
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	100.0
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	100.0
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	100.0
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	100.0
1vp4_A	425	Aminotransferase, putative; structural genomics, j	100.0
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	100.0
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	100.0
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	100.0
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	100.0
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	100.0
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	100.0
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	100.0
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	100.0
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	100.0
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	100.0
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	100.0
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	100.0
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	100.0
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	100.0
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	100.0
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	100.0
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	100.0
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	100.0
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	100.0
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	100.0
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	100.0
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	100.0
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	100.0
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	100.0
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	100.0
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	100.0
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	100.0
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	100.0
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	100.0
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	100.0
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	100.0
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	100.0
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	100.0
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	100.0
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	100.0
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.98
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.98
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.98
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.98
1svv_A	359	Threonine aldolase; structural genomics, structura	99.98
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.97
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.97
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.97
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.97
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.97
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.97
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.97
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.97
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.97
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.97
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.97
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.97
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.97
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.97
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.97
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.97
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.97
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.97
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.97
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.97
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.97
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.97
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.97
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.97
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.97
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.97
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.96
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.96
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.96
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.96
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.96
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.96
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.96
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.96
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.96
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.96
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.96
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.96
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.96
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.96
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.96
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.96
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.96
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.96
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.96
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.96
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.96
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.96
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.96
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.96
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.96
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.96
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.95
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.95
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.95
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.95
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.95
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.95
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.95
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.95
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.95
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.95
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.95
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.95
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.95
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.95
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.95
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.95
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.95
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.95
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.95
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.94
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.94
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.94
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.94
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.94
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.94
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.94
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.94
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.94
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.94
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.94
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.94
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.94
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.94
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.94
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.94
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.93
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.93
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.93
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.93
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.93
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.93
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.93
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.93
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.93
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.93
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.93
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.93
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.93
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.93
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.92
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.92
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.92
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.92
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.92
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.92
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.92
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.92
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.91
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.91
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.91
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.91
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.91
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.9
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.83
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.9
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.9
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.9
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.89
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.89
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.89
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.89
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.89
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.88
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.88
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.88
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.88
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.88
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.88
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.87
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.87
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.85
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.84
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.82
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.82
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.81
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.81
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.72
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.65
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.63
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.62
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.54
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.53
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.53
3gh5_A	525	HEX1, beta-hexosaminidase; beta-N-acetylhexosamini	84.7
1jak_A	512	Beta-N-acetylhexosaminidase; glycoside hydrolase,	81.31

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=100.00  E-value=3.8e-67  Score=522.33  Aligned_cols=400  Identities=43%  Similarity=0.750  Sum_probs=354.9

Q ss_pred             ccccccCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHH
Q 012647           54 VNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNK  133 (459)
Q Consensus        54 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~  133 (459)
                      ...+++++++..|+|+|+++.+.+++++++ +|||++|.|+|+++.|+++|.|++|.+.+++.+..+.|.|..|+++||+
T Consensus        16 ~~~~~~~~v~~~p~d~i~~l~~~~~~d~~~-kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~   94 (420)
T 4h51_A           16 TTAERWQKIQAQAPDVIFDLAKRAAAAKGP-KANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFID   94 (420)
T ss_dssp             CHHHHHHTCCCCCCCHHHHHHHHHHHCCSS-CEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHH
T ss_pred             hhhHHHhCCCCCCCChHHHHHHHHhcCCCC-CEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHH
Confidence            345688999999999999999999998775 9999999999999999999999999998887766678999999999999


Q ss_pred             HHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHh--CCCCEEEEcCCCCcchHHHhhhCCCCe-eeeeeecCC
Q 012647          134 VTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY--FPGAKVLISSPTWGNHKNIFNDARVPW-SEYRYYDPK  210 (459)
Q Consensus       134 aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~--~~gd~Vlv~~p~y~~~~~~~~~~G~~v-~~v~~~~~~  210 (459)
                      ++++++.+...   ..+++..+||.|||+|+..++.++...  .|||+|++++|+|++|..+++.+|++. ..+++.+++
T Consensus        95 aia~~~~g~~~---~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~  171 (420)
T 4h51_A           95 EAVKIIYGNTV---ELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPK  171 (420)
T ss_dssp             HHHHHHHC------CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGG
T ss_pred             HHHHHhcCCCc---cccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeecccccc
Confidence            99999876542   256777888999999999886665432  499999999999999999999999984 456666667


Q ss_pred             CCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH
Q 012647          211 TVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA  290 (459)
Q Consensus       211 ~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~  290 (459)
                      ++.+|++.+.+.+...+++++++++++||||||.+++.++|++|+++|+++++++|+|++|++|.+++.+.+.+.++.+.
T Consensus       172 ~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~  251 (420)
T 4h51_A          172 TVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFA  251 (420)
T ss_dssp             GTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHH
T ss_pred             ccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHH
Confidence            78999999999998877889999999999999999999999999999999999999999999999876444555666666


Q ss_pred             hcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012647          291 TRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME  370 (459)
Q Consensus       291 ~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~  370 (459)
                      +..++++++.||||.|+++|||+||+++++...+...++...+....+..+++++..+|.++..+|+++.+..+|+++++
T Consensus       252 ~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~  331 (420)
T 4h51_A          252 RRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELS  331 (420)
T ss_dssp             HTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             hhCceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            77789999999999999999999999887787777788888888888888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHH
Q 012647          371 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADA  450 (459)
Q Consensus       371 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~  450 (459)
                      .++++|+++|+.|.+.|+ ++|.+.+|.++.+++|||+|+|++.++++.| +++||+++|+||||++++++++|++++++
T Consensus       332 ~m~~r~~~~R~~l~~~L~-~~g~~~~~~~i~~q~GmF~~~gls~e~v~~L-~e~~Vy~~~~gRis~Agl~~~ni~~~a~a  409 (420)
T 4h51_A          332 AMAERIRTMRRTVYDELL-RLQTPGSWEHVINQIGMFSFLGLSKAQCEYC-QNHNIFITVSGRANMAGLTHETALMLAQT  409 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HTTCSSCCTHHHHCCSSEEECCCCHHHHHHH-HHTTEECCTTCEEEGGGCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-HhCCCCCCCeecCCCceEEecCcCHHHHHHH-HhCCEEEcCCCEEEeccCCHHHHHHHHHH
Confidence            999999999999999999 9988888999999999999999999998766 55799999999999999999999999999


Q ss_pred             HHHHHhhcC
Q 012647          451 IIDSYHNVS  459 (459)
Q Consensus       451 l~~~~~~~~  459 (459)
                      |.+++++++
T Consensus       410 I~~vvr~i~  418 (420)
T 4h51_A          410 INDAVRNVN  418 (420)
T ss_dssp             HHHHHC---
T ss_pred             HHHHHHHhh
Confidence            999998764

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=100.00  E-value=4.2e-63  Score=493.12  Aligned_cols=397  Identities=27%  Similarity=0.523  Sum_probs=338.9

Q ss_pred             cccCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHh-hcCCCCCCCCCcccHHHHHHH
Q 012647           57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-ERGENKEYLPIEGLAAFNKVT  135 (459)
Q Consensus        57 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~-~~~~~~~Y~~~~g~~~lr~ai  135 (459)
                      |.|++++..++++++++.+.++++..+++|||++|.|.|+++.+++++.|.++.. ++ +....++|+|..|.++||+++
T Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~ai   81 (405)
T 3k7y_A            3 KLLSSLENIEVDNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLT   81 (405)
T ss_dssp             CGGGGCCCCCCCHHHHHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHH
T ss_pred             chhhcCCCCCCChHHHHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHH
Confidence            4688999999999999999998887889999999998787776666899999887 54 334457999999999999999


Q ss_pred             HHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCC
Q 012647          136 AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD  215 (459)
Q Consensus       136 a~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d  215 (459)
                      ++++.+.++..++++++.+++|.|+++|++++..++..+.| |+|++++|+|.+|...++.+|++++.+|+.+++++++|
T Consensus        82 a~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d  160 (405)
T 3k7y_A           82 QNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDIN  160 (405)
T ss_dssp             HHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEEC
T ss_pred             HHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcC
Confidence            99998877777777765233399999999999665543448 99999999999999999999999999998545678999


Q ss_pred             HHHHHHHHHcCCCCcEEEEe-CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC
Q 012647          216 FEGMIADIKAAPGGSFILLH-GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM  294 (459)
Q Consensus       216 ~e~l~~~i~~~~~~~~~ii~-~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~  294 (459)
                      ++.+++++++.+ +++++++ ++||||||.+++.+++++|+++|++||++||+||+|.++.+++.+.+..++..+....+
T Consensus       161 ~~~l~~~l~~~~-~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~  239 (405)
T 3k7y_A          161 YDLFLNDLRNIP-NGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNI  239 (405)
T ss_dssp             HHHHHHHHHHSC-SSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTC
T ss_pred             HHHHHHHHHhCC-CCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCC
Confidence            999999998633 3444444 45699999999999999999999999999999999999997643334455656655567


Q ss_pred             eEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 012647          295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAG  374 (459)
Q Consensus       295 ~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~  374 (459)
                      ++++++||||+|+++|||+||+++++++++.++++.+.+....+..+++++.++|.++..+|.++++.++|.++++++++
T Consensus       240 ~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~  319 (405)
T 3k7y_A          240 AFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQ  319 (405)
T ss_dssp             CEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             cEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999997667788888778777776666677788899999999999998888889999999999


Q ss_pred             HHHHHHHHHHHHHhh---ccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHHH
Q 012647          375 RIKNVRQKLFDSLSA---KDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI  451 (459)
Q Consensus       375 ~~~~~~~~l~~~L~~---~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~l  451 (459)
                      +|+++|+.+.+.|++   ++|.+++|++..++||||+|++++.+++++| +++||++.|+||||+++++++++++++++|
T Consensus       320 ~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~~~~~~L-~~~gV~v~p~~Ris~a~~~~~~i~~~~~~i  398 (405)
T 3k7y_A          320 RITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLAKIAEHL-KTHHIYIINNGRINVSGITKNNVDYIADKI  398 (405)
T ss_dssp             HHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGGGGTTTT-TTTTEECCTTSEEEGGGCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCHHHHHHH-HHCCEeecCCCeEEEeccCHHHHHHHHHHH
Confidence            999999999999983   4566666899999999999999987888888 788999999999999988999999999999


Q ss_pred             HHHHhh
Q 012647          452 IDSYHN  457 (459)
Q Consensus       452 ~~~~~~  457 (459)
                      +++++.
T Consensus       399 ~~~~~~  404 (405)
T 3k7y_A          399 CLSLSQ  404 (405)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            999874

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=100.00  E-value=3.4e-58  Score=465.79  Aligned_cols=402  Identities=42%  Similarity=0.765  Sum_probs=350.8

Q ss_pred             ccccCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHh--hcCCCCCCCCCcccHHHHH
Q 012647           56 VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML--ERGENKEYLPIEGLAAFNK  133 (459)
Q Consensus        56 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~--~~~~~~~Y~~~~g~~~lr~  133 (459)
                      ++.+++++..++++|+++.+.+++++++++|||++|.|+|..+.+++.+.+.+++.+..  +......|.+..|.+++|+
T Consensus        22 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~  101 (448)
T 3meb_A           22 MSVFSGFPASPPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLE  101 (448)
T ss_dssp             CCTTTTCCCCCCCTTHHHHHHHHHCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHH
T ss_pred             hhHHhcCCCCCCChHHHHHHHHHhCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHH
Confidence            46799999999999999999999988888999999999998888888899999988776  2233478999999999999


Q ss_pred             HHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh----hCCCCeeeeeeecC
Q 012647          134 VTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVPWSEYRYYDP  209 (459)
Q Consensus       134 aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~G~~v~~v~~~~~  209 (459)
                      ++++++.+.....+++++|+++||+||+++++++..++..+.+||+|++++|+|.+|...++    ..|++++.+|+.++
T Consensus       102 ~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~  181 (448)
T 3meb_A          102 AAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRK  181 (448)
T ss_dssp             HHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCT
T ss_pred             HHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEecccc
Confidence            99999865443334568999999999999999976677778899999999999999999999    99999999998545


Q ss_pred             C-CCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH
Q 012647          210 K-TVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (459)
Q Consensus       210 ~-~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~  288 (459)
                      + ++++|++.+++++++.+++++++++++||||||.+++.++|++|+++|++||+++|+||+|+++.+++.+.+.+++..
T Consensus       182 ~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~  261 (448)
T 3meb_A          182 DGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRM  261 (448)
T ss_dssp             TSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHH
T ss_pred             ccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHH
Confidence            5 689999999999986555788999999999999999999999999999999999999999999997642223456666


Q ss_pred             HHhcCCeEEEEEcCCcCcccCCCCcceEEEEe--------CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChh
Q 012647          289 FATRGMELLVAQSYSKNLGLYAERIGAMNVVC--------SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPA  360 (459)
Q Consensus       289 ~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  360 (459)
                      +....++++++.||||.||++|+|+||+.+++        ++++..+.+.+.+....+..+++++.++|.++..+|.+++
T Consensus       262 ~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~  341 (448)
T 3meb_A          262 FVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKR  341 (448)
T ss_dssp             HHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHH
T ss_pred             HhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChH
Confidence            66677899999999999999999999986556        5665566677777776677788899999999999999998


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-----CcccccCCcceeeecCCCHHHHHHHHhcccEEEcCC-CcE
Q 012647          361 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGK-----DWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKD-GRI  434 (459)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-----~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~g-gRi  434 (459)
                      +..+|.+++++++++++++++++.+.|+ ++|.++     .|.+..+++|+|+|++++.+++..+++++||++.|| |||
T Consensus       342 l~~~~~~~~~~~~~~~~~~r~~l~~~L~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gV~v~~G~gRi  420 (448)
T 3meb_A          342 LLQMFYDNVKEMSARIHRMRSLLHASLA-KRKTPGPGSKGTWDHILTAIGMFTFTGLTPEHVDYLKEKWSIYLVKAGGRM  420 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCCCSTTTCCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEEECSGGGEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCcCcccccceeCCCceEEEecCCCHHHHHHHHHhCCEEEeCCCcEE
Confidence            8889989999999999999999999999 886655     478888999999999999999999988899999995 599


Q ss_pred             EEccCChhhHHHHHHHHHHHHhhc
Q 012647          435 SLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       435 s~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      |+++++++++++++++|+++++++
T Consensus       421 s~a~~~~~~i~~~~~~l~~~l~~~  444 (448)
T 3meb_A          421 SMCGLTESNCDYVAEAIHDAVTKL  444 (448)
T ss_dssp             EGGGCCTTTHHHHHHHHHHHHHHS
T ss_pred             EEecCCHHHHHHHHHHHHHHHHhc
Confidence            999888899999999999999865

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=100.00  E-value=6.5e-58  Score=457.23  Aligned_cols=399  Identities=50%  Similarity=0.906  Sum_probs=347.5

Q ss_pred             cccCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHH
Q 012647           57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTA  136 (459)
Q Consensus        57 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia  136 (459)
                      |.+++++..+++++++..+.++.++++++|+|+.|.|+|..++|++.+.+.+++.+........+|.+..|.+++|++++
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia   81 (401)
T 7aat_A            2 SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASA   81 (401)
T ss_dssp             CSSTTCCCCCCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHH
T ss_pred             ChhhcCCCCCCChhHHHHHHHhhCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHH
Confidence            57888999999999999999988888889999999998888888778899999988876433578999999999999999


Q ss_pred             HHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH-hCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCC
Q 012647          137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD  215 (459)
Q Consensus       137 ~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d  215 (459)
                      +++.+.+|..+++++|++++|+||+++++++..++.. +.+||+|++++|+|..|...++..|++++.+|+++++++++|
T Consensus        82 ~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d  161 (401)
T 7aat_A           82 ELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLD  161 (401)
T ss_dssp             HHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEEC
T ss_pred             HHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccC
Confidence            9999888888889999777799999999998655433 368999999999999999999999999999998656678999


Q ss_pred             HHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012647          216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME  295 (459)
Q Consensus       216 ~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~  295 (459)
                      ++.+++.+++.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++.+.+.+++..+....++
T Consensus       162 ~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~  241 (401)
T 7aat_A          162 FTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGID  241 (401)
T ss_dssp             HHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCc
Confidence            99999888765557889999999999999999999999999999999999999999999875321123455555566789


Q ss_pred             EEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012647          296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR  375 (459)
Q Consensus       296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~  375 (459)
                      +++++||||.||++|+|+||++++.++++..+.+...+....+..+.+++..+|.++..+++++.+.+.|.+++++.+++
T Consensus       242 ~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  321 (401)
T 7aat_A          242 VVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADR  321 (401)
T ss_dssp             CEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999976567777666677777766666677888889999988999988888899999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHHHHHHH
Q 012647          376 IKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       376 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~l~~~~  455 (459)
                      ++++++++.+.|+ +++.++.+++..+++|+|+|++++.+++..+++++||.+.+++|||++..++++|++++++|++++
T Consensus       322 ~~~~r~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~~~Ris~~~~~~~~i~~~~~~l~~~~  400 (401)
T 7aat_A          322 IISMRTQLVSNLK-KEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVT  400 (401)
T ss_dssp             HHHHHHHHHHHHH-HTTCCSCCHHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-hcCCCCCCceecCCcceEEecCCCHHHHHHHHHhCCEeccCCCeEEeccCChhhHHHHHHHHHHHh
Confidence            9999999999999 887555678888999999999999999999988889999999999999888888999999999876


Q ss_pred             h
Q 012647          456 H  456 (459)
Q Consensus       456 ~  456 (459)
                      +
T Consensus       401 ~  401 (401)
T 7aat_A          401 K  401 (401)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=100.00  E-value=3.7e-57  Score=454.67  Aligned_cols=397  Identities=42%  Similarity=0.755  Sum_probs=345.8

Q ss_pred             ccccCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHH
Q 012647           56 VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVT  135 (459)
Q Consensus        56 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~ai  135 (459)
                      ++.++++...++++++++.+.++.+..+++|||+.|.|+|+++.+++++.|.+++.+.++.....+|.+..|.+++|+++
T Consensus        22 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~i  101 (420)
T 4f4e_A           22 MSLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASV  101 (420)
T ss_dssp             CCTTTTCCCCCCCHHHHHHHHHHHCCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHH
T ss_pred             cCHhhcCCcCCCChHHHHHHHHHhcCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHH
Confidence            35788999999999999999888777789999999998887777766799999999988764457899999999999999


Q ss_pred             HHHHhcCCCCccccC--ceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCC
Q 012647          136 AELLFGADNSVLKEQ--RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVG  213 (459)
Q Consensus       136 a~~l~~~~~~~~~~~--~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~  213 (459)
                      ++++.+..+..++++  +|++  |+||+++++++.++++.+.+||+|++++|+|.+|...++..|++++.+|+.++++++
T Consensus       102 a~~l~~~~~~~~~~~~~~i~~--t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~  179 (420)
T 4f4e_A          102 QKLLLGDDSPLIAAGRVVTAQ--ALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNG  179 (420)
T ss_dssp             HHHHHCTTCHHHHTTCEEEEE--EEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTE
T ss_pred             HHHhcCCCccccccCceEEEE--CCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCc
Confidence            999988776666788  8888  999999999997767778899999999999999999999999999999985556789


Q ss_pred             CCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC
Q 012647          214 LDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (459)
Q Consensus       214 ~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~  293 (459)
                      +|++.+++.++..+++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++ +.+..++..+....
T Consensus       180 ~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~-~~~~~~~~~~~~~~  258 (420)
T 4f4e_A          180 VNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESI-EADAAAVRLFAAAN  258 (420)
T ss_dssp             ECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCT-TGGGHHHHHHHHTT
T ss_pred             cCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCc-chhhHHHHHHHhcC
Confidence            99999999998654578999999999999999999999999999999999999999999999762 12345666665567


Q ss_pred             CeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHH
Q 012647          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMA  373 (459)
Q Consensus       294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~  373 (459)
                      +++++++||||.||++|+|+||+++++++++.++.+...+....+..+.+++.++|.++..+|.++.+.+.|.+++++++
T Consensus       259 ~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~  338 (420)
T 4f4e_A          259 LNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMR  338 (420)
T ss_dssp             CCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            89999999999999999999999765677777766666666655566777888999999999999888877888899999


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHHHHH
Q 012647          374 GRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID  453 (459)
Q Consensus       374 ~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~l~~  453 (459)
                      ++++++++.+.+.|+ +++.+.++.+..+++|+|+|++++.+++..+++++||.+.|++|||++.++++++++++++|++
T Consensus       339 ~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~gI~v~~~~Ris~~~~~~~~i~~~~~~l~~  417 (420)
T 4f4e_A          339 DRIRAMRNGLVERLK-AAGIERDFSFINAQRGMFSYSGLTSAQVDRLREEFGIYAVSTGRICVAALNTRNLDVVANAIAA  417 (420)
T ss_dssp             HHHHHHHHHHHHHHH-HTTCSSCCTHHHHSCSSEEECCCCHHHHHHHHHHHCEECCTTSEEEGGGCCTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-hcCCCCCceeECCCccEEEEeCCCHHHHHHHHHhCCEEecCCCeEEEecCCHHHHHHHHHHHHH
Confidence            999999999999999 8743234788889999999999998888888888899999999999998888999999999998


Q ss_pred             HHh
Q 012647          454 SYH  456 (459)
Q Consensus       454 ~~~  456 (459)
                      +++
T Consensus       418 ~l~  420 (420)
T 4f4e_A          418 VLK  420 (420)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            863

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=100.00  E-value=1.5e-55  Score=441.42  Aligned_cols=394  Identities=42%  Similarity=0.775  Sum_probs=322.0

Q ss_pred             cccCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHH
Q 012647           57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTA  136 (459)
Q Consensus        57 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia  136 (459)
                      +.+++++..++++++++.+.++++..+++|+|+.|.|+|..+.+.+.+.+.++    .. .....|.+..|.++||++++
T Consensus        15 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a----~~-~~~~~y~~~~g~~~lr~~ia   89 (409)
T 4eu1_A           15 QTQGPGSMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQA----TL-GTNMDYAPVTGIASFVEEAQ   89 (409)
T ss_dssp             ------------CHHHHHHHHHHCCCSSCEECCCSSCCCTTSCCCCCHHHHTC----CC-CSCCCCCCTTCCHHHHHHHH
T ss_pred             hHhhcCCCCCCChHHHHHHHHhhCCCcCceeeeeeEEECCCCCEeecHHHHhc----Cc-cccccCCCCCCcHHHHHHHH
Confidence            57889999999999999999998888899999999987765555444444443    32 23478999999999999999


Q ss_pred             HHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHh-CCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCC
Q 012647          137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY-FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD  215 (459)
Q Consensus       137 ~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d  215 (459)
                      +++.+..+..+++++|.+.+|.||+++++++..++..+ .+||+|++++|+|..|...++..|++++.+|+.+++++++|
T Consensus        90 ~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d  169 (409)
T 4eu1_A           90 KLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLN  169 (409)
T ss_dssp             HHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEEC
T ss_pred             HHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCc
Confidence            99876655555578886566999999999875555444 48999999999999999999999999999998656678999


Q ss_pred             HHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012647          216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME  295 (459)
Q Consensus       216 ~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~  295 (459)
                      ++.+++++++.++.++++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++...+..++..+.+..++
T Consensus       170 ~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~  249 (409)
T 4eu1_A          170 LAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPN  249 (409)
T ss_dssp             HHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSC
T ss_pred             HHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCc
Confidence            99999999854446788888999999999999999999999999999999999999999876311123455555566678


Q ss_pred             EEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012647          296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR  375 (459)
Q Consensus       296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~  375 (459)
                      +++++||||.||++|+|+||+.+++++++..+.+.+.+....+..+.+++.++|.++..+|+++.+.++|.+++++.+++
T Consensus       250 ~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  329 (409)
T 4eu1_A          250 LIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSR  329 (409)
T ss_dssp             CEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999754567888777777777666556676888999999999999888888888889999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHHHHHHH
Q 012647          376 IKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       376 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~l~~~~  455 (459)
                      ++++++++.+.|+ ++|.|..+++..+++|+|+|++++.+++.++++++||.+.|++||+++..+++++++++++|++++
T Consensus       330 ~~~~~~~l~~~L~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~p~~Ri~~~~~~~~~i~~~~~~l~~~l  408 (409)
T 4eu1_A          330 IAEVRKRLVSELK-ACGSVHDWSHIERQVGMMAYTGLTREQVELLRSEYHIYMTLNGRAAVSGLNSTNVEYVSQAIHNVT  408 (409)
T ss_dssp             HHHHHHHHHHHHH-HTTCCSCCHHHHHSCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-hcCCCCCcceecCCceEEEEeCCCHHHHHHHHHcCCEEEcCCCEEEEEecCHhhHHHHHHHHHHHh
Confidence            9999999999999 887666678888999999999999888999998889999999999999889999999999999876


Q ss_pred             h
Q 012647          456 H  456 (459)
Q Consensus       456 ~  456 (459)
                      +
T Consensus       409 ~  409 (409)
T 4eu1_A          409 K  409 (409)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=100.00  E-value=3.7e-54  Score=429.34  Aligned_cols=393  Identities=40%  Similarity=0.714  Sum_probs=337.5

Q ss_pred             cCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHH-HhhcCCCCCCCCCcccHHHHHHHHH
Q 012647           59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENL-MLERGENKEYLPIEGLAAFNKVTAE  137 (459)
Q Consensus        59 ~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~-~~~~~~~~~Y~~~~g~~~lr~aia~  137 (459)
                      +++++..++++++.+.+.++.+..+++|||+.|.|+|+++.+++++.|.+++.+ .+.......|.+..|.+++|+++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~   81 (397)
T 3fsl_A            2 FQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAP   81 (397)
T ss_dssp             CTTCCCCCCCHHHHHHHHHHTCCCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHH
T ss_pred             cccCCCCCCCchhhHHHHHhcCCCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHH
Confidence            567888899999999999988888899999999988877777667999999999 8865445789888999999999999


Q ss_pred             HHhcCCCCccccC--ceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCC
Q 012647          138 LLFGADNSVLKEQ--RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD  215 (459)
Q Consensus       138 ~l~~~~~~~~~~~--~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d  215 (459)
                      ++.+.++..++++  +|++  |+|++++++++.+++..+.+||+|++++|+|..|...++..|++++.+|+.+++++++|
T Consensus        82 ~~~~~~~~~~~~~~~~i~~--t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d  159 (397)
T 3fsl_A           82 LLFGADHPVLKQQRVATIQ--TLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVR  159 (397)
T ss_dssp             HHHCTTCHHHHTTCEEEEE--ESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEEC
T ss_pred             HHhcCCcccccccceEEEE--cCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCc
Confidence            9987766556788  8899  99999999998766666889999999999999999999999999999998655678999


Q ss_pred             HHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012647          216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME  295 (459)
Q Consensus       216 ~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~  295 (459)
                      ++.+++++++.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++. ..+..++..+.+..++
T Consensus       160 ~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~  238 (397)
T 3fsl_A          160 FNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGM-EEDAYAIRAIASAGLP  238 (397)
T ss_dssp             HHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCT-TGGGHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCc-ccccHHHHHHHhcCCC
Confidence            999999998654578999999999999999999999999999999999999999999998752 1234455555556789


Q ss_pred             EEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012647          296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR  375 (459)
Q Consensus       296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~  375 (459)
                      +++++||||.||++|+|+||+++.+++++.++.+...+....+..+.+++.++|.++..+|.+..+..+|.+++++.+++
T Consensus       239 ~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~  318 (397)
T 3fsl_A          239 ALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTR  318 (397)
T ss_dssp             EEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999975456777666666665554445566778899999999999988877788889999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHHHHHHH
Q 012647          376 IKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       376 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~l~~~~  455 (459)
                      ++++++++.+.|+ +++.+.++.+..+++|+|+|++++.+.+..+++++||.+.||+|||++..+++++++++++|++++
T Consensus       319 ~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~Ris~~~~~~~~i~~~~~~l~~~l  397 (397)
T 3fsl_A          319 ILAMRQELVKVLS-TEMPERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAVM  397 (397)
T ss_dssp             HHHHHHHHHHHHH-HHCTTSCCTHHHHCCSSEEECCCCHHHHHHHHHTTCEECCTTCEEEGGGCCTTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH-hcCCCCCceeecCCceEEEecCCCHHHHHHHHHhCCEEECCCCeEEEEecCHhhHHHHHHHHHhhC
Confidence            9999999999999 873221367788899999999999888888888899999999999999888899999999998763

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=100.00  E-value=3.5e-52  Score=417.35  Aligned_cols=401  Identities=41%  Similarity=0.748  Sum_probs=330.0

Q ss_pred             cccCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHH-HhhcCCCCCCCCCcccHHHHHHH
Q 012647           57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENL-MLERGENKEYLPIEGLAAFNKVT  135 (459)
Q Consensus        57 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~-~~~~~~~~~Y~~~~g~~~lr~ai  135 (459)
                      |.++++...+++++..+...++.+.++++|||+.|.|+|.++.+++++.+.+++.+ .+.....+.|.+..|.+++|+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~i   82 (412)
T 1yaa_A            3 TLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNA   82 (412)
T ss_dssp             TTTTTCCCCCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHH
T ss_pred             chhccCcccCCCcHHHHHHHHhcCCCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHH
Confidence            45778888889999998888876656789999999998887776668999999999 87643346798899999999999


Q ss_pred             HHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCC
Q 012647          136 AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD  215 (459)
Q Consensus       136 a~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d  215 (459)
                      ++++.+.++..+++++|+++||+||+++++++.+++..+.+||+|++++|+|..|...++..|++++.+|+.+++++++|
T Consensus        83 a~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d  162 (412)
T 1yaa_A           83 AKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLD  162 (412)
T ss_dssp             HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEEC
T ss_pred             HHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccC
Confidence            99997777777778999888899999999998666666789999999999999999999999999999998334468899


Q ss_pred             HHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC-
Q 012647          216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM-  294 (459)
Q Consensus       216 ~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~-  294 (459)
                      ++.+++++++.++.++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++...+..++..+....+ 
T Consensus       163 ~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (412)
T 1yaa_A          163 LNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLST  242 (412)
T ss_dssp             HHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCC
Confidence            9999999986433467777799999999999999999999999999999999999999986520001224434333445 


Q ss_pred             --eEEEEEcCCcCcccCCCCcceEEEEe----CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHH
Q 012647          295 --ELLVAQSYSKNLGLYAERIGAMNVVC----SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAE  368 (459)
Q Consensus       295 --~~i~~~S~SK~~~~~G~RiG~~~~v~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~  368 (459)
                        ++++++||||.||++|+|+||+++++    .+++..+.+.+.+....+..+.+++.++|.++..+|++..+.+.|.++
T Consensus       243 ~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~  322 (412)
T 1yaa_A          243 VSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKD  322 (412)
T ss_dssp             TCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             CcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHH
Confidence              79999999999998899999995225    245534445555554444556677889999999899887766667778


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHH
Q 012647          369 MEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLA  448 (459)
Q Consensus       369 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~  448 (459)
                      +++++++++++++++.+.|+ +++.++++++..+++|+|+|.+++.+.+..+++++||.+.+..|||++..+++++++++
T Consensus       323 ~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~Ris~~~~~~~~i~~~~  401 (412)
T 1yaa_A          323 MVTMSSRITKMRHALRDHLV-KLGTPGNWDHIVNQCGMFSFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVA  401 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHTCSSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTSEEEGGGCCTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hhCCCCCeeeeccCceEEEeeCCCHHHHHHHHHhCCEEeccCcEEEEccCCHhHHHHHH
Confidence            99999999999999999999 87522236777889999999999887788888778999999789999877899999999


Q ss_pred             HHHHHHHhhc
Q 012647          449 DAIIDSYHNV  458 (459)
Q Consensus       449 ~~l~~~~~~~  458 (459)
                      ++|+++++.+
T Consensus       402 ~~l~~~~~~~  411 (412)
T 1yaa_A          402 KAIDEVVRFY  411 (412)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhh
Confidence            9999998865

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=100.00  E-value=3.9e-52  Score=416.89  Aligned_cols=401  Identities=45%  Similarity=0.822  Sum_probs=332.6

Q ss_pred             ccCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhc-CCCCCCCCCcccHHHHHHHH
Q 012647           58 RFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GENKEYLPIEGLAAFNKVTA  136 (459)
Q Consensus        58 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~Y~~~~g~~~lr~aia  136 (459)
                      .++++...+++++.++.+.++.+.++++|||+.|.|+|.++++++++.+.+++.+.+.. ...+.|.+..|.+++|++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la   84 (412)
T 1ajs_A            5 VFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCAS   84 (412)
T ss_dssp             TTTTCCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHH
T ss_pred             hhhhCcccCCchHHHHHHHHhhcCCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHH
Confidence            46778888899999988888765567899999999988776666689999999988732 23468989999999999999


Q ss_pred             HHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCC-----CEEEEcCCCCcchHHHhhhCCCC-eeeeeeecCC
Q 012647          137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG-----AKVLISSPTWGNHKNIFNDARVP-WSEYRYYDPK  210 (459)
Q Consensus       137 ~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~g-----d~Vlv~~p~y~~~~~~~~~~G~~-v~~v~~~~~~  210 (459)
                      +++.+.++..+++++|++++|+||+++++++.+++..+.+|     |+|++++|+|..|...++..|++ ++.+|+.+++
T Consensus        85 ~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~  164 (412)
T 1ajs_A           85 RLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTE  164 (412)
T ss_dssp             HHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETT
T ss_pred             HHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCC
Confidence            99877777767789998778999999999997666667899     99999999999999999999999 9999986456


Q ss_pred             CCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH
Q 012647          211 TVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA  290 (459)
Q Consensus       211 ~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~  290 (459)
                      ++++|++.+++++++.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++.....+++..+.
T Consensus       165 ~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~  244 (412)
T 1ajs_A          165 KRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFV  244 (412)
T ss_dssp             TTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHH
T ss_pred             CCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHh
Confidence            78899999999998644467888889999999999999999999999999999999999999998642000223444443


Q ss_pred             hcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012647          291 TRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME  370 (459)
Q Consensus       291 ~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~  370 (459)
                      ...++++++.||||.||++|+|+||+++.+++++..+.+.+.+....+..+.+++.++|.++..+|++..+...|.++++
T Consensus       245 ~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  324 (412)
T 1ajs_A          245 SEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVK  324 (412)
T ss_dssp             HTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHH
Confidence            44578999999999999999999999542346776666666655544455656788888998888888765556677889


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHH
Q 012647          371 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADA  450 (459)
Q Consensus       371 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~  450 (459)
                      +.+++++++++++.+.|+ +++.|.++++..+++|+|+|++++.+++..+++++||.+.|++||+++..+++++++++++
T Consensus       325 ~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~Ris~~~~~~~~i~~~~~~  403 (412)
T 1ajs_A          325 TMADRILSMRSELRARLE-ALKTPGTWNHITDQIGMFSFTGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVATS  403 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HTTCSSCCHHHHHCCSSEEECCCCHHHHHHHHHTTCEECCTTSEEEGGGCCTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-hhCCCCCeeEEcCCCceEEEeCCCHHHHHHHHHhCCEEecCCcEEEeeeCCHHHHHHHHHH
Confidence            999999999999999999 8764444677788999999999988888888888899999999999996689999999999


Q ss_pred             HHHHHhhcC
Q 012647          451 IIDSYHNVS  459 (459)
Q Consensus       451 l~~~~~~~~  459 (459)
                      |++++++++
T Consensus       404 l~~~l~~~~  412 (412)
T 1ajs_A          404 IHEAVTKIQ  412 (412)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhcC
Confidence            999998763

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=100.00  E-value=3.4e-51  Score=407.75  Aligned_cols=395  Identities=44%  Similarity=0.770  Sum_probs=307.9

Q ss_pred             cCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHH
Q 012647           59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL  138 (459)
Q Consensus        59 ~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~  138 (459)
                      ++++...+++++..+...++.+.++++|||+.|.|.+.++.++.++.+.+++.+.+.....+.|.+..|.+++|++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~   81 (396)
T 2q7w_A            2 FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQEL   81 (396)
T ss_dssp             CTTCCCCCC-----------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHH
T ss_pred             ccccccCCCchHHHHHHHHhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHH
Confidence            45667777888887777666555568999999998776664455799999998877543346898999999999999999


Q ss_pred             HhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHH
Q 012647          139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEG  218 (459)
Q Consensus       139 l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~  218 (459)
                      +.+.++..+++++|++++|+||+++++++.+++..+.+||+|++++|+|..|...++..|++++.+|+.+++++++|++.
T Consensus        82 ~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~  161 (396)
T 2q7w_A           82 LFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDA  161 (396)
T ss_dssp             HHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHH
T ss_pred             HhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHH
Confidence            87665555668888755689999999998666655679999999999999999999999999999998644678899999


Q ss_pred             HHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012647          219 MIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (459)
Q Consensus       219 l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (459)
                      +++++++.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ....++..+....+++++
T Consensus       162 l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~i~  240 (396)
T 2q7w_A          162 LINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLE-EDAEGLRAFAAMHKELIV  240 (396)
T ss_dssp             HHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHH-HHTHHHHHHHHHCSCEEE
T ss_pred             HHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcc-chhHHHHHHHhcCCcEEE
Confidence            9999976434578888999999999999999999999999999999999999999986410 012344444344568999


Q ss_pred             EEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012647          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  378 (459)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  378 (459)
                      ++||||.+|++|+|+||+++++++++.++.+.+.+....+..+.+++.++|.++..+|++..+.+.|.+++++.++++++
T Consensus       241 ~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~  320 (396)
T 2q7w_A          241 ASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQR  320 (396)
T ss_dssp             EEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHH
T ss_pred             EEeccccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999953234565555566665544445565678889999999998875666667788999999999


Q ss_pred             HHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHHHHHHH
Q 012647          379 VRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       379 ~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~l~~~~  455 (459)
                      +++++.+.|+ +++.+.++++..+++|+|+|++++.+++..+++++||.+.++.|||++..+++++++++++|++++
T Consensus       321 ~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~Ris~~~~~~e~i~~~~~~l~~~l  396 (396)
T 2q7w_A          321 MRQLFVNTLQ-EKGANRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL  396 (396)
T ss_dssp             HHHHHHHHHH-HTTCCSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHH-hcCCCCCcceecCCCceEEEecCCHHHHHHHHHhcCeeecCCceEEEeecCHHHHHHHHHHHHhcC
Confidence            9999999999 876322367778899999999998888888887789999998899999768999999999998764

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=100.00  E-value=8.4e-50  Score=397.53  Aligned_cols=391  Identities=38%  Similarity=0.660  Sum_probs=317.5

Q ss_pred             cCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHH
Q 012647           59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL  138 (459)
Q Consensus        59 ~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~  138 (459)
                      |++++..++++++++.+.++.+.++++|||+.|.|.+.++.+++++.+.+++.+.+.....+.|++..|.+++|++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~   81 (394)
T 2ay1_A            2 LGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGEL   81 (394)
T ss_dssp             GGGCCCCCCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHH
T ss_pred             CccCccCCCccHHHHHHHHHhCCCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHH
Confidence            45677788999998888887666678999999998776654455799999998877543347898889999999999999


Q ss_pred             HhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHH
Q 012647          139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEG  218 (459)
Q Consensus       139 l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~  218 (459)
                      +.+.   .+++++|++++|+||+++++++.+++..+.+||+|++++|+|..|...++..|++++.+|+++++++++|++.
T Consensus        82 ~~~~---~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~  158 (394)
T 2ay1_A           82 ILGD---GLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEG  158 (394)
T ss_dssp             HHGG---GCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHH
T ss_pred             HhCC---CCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHH
Confidence            8543   1247888766789999999998666655569999999999999999999999999999998644678899999


Q ss_pred             HHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012647          219 MIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (459)
Q Consensus       219 l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (459)
                      +++++++.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. .+..++..+....+++++
T Consensus       159 l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~i~  237 (394)
T 2ay1_A          159 MKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLE-EDAAGTRLIASRIPEVLI  237 (394)
T ss_dssp             HHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHH-HHHHHHHHHHHHCSSEEE
T ss_pred             HHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcc-cchHHHHHHhhcCCCEEE
Confidence            9999986434578888899999999999999999999999999999999999999886410 012334434344568999


Q ss_pred             EEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012647          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  378 (459)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  378 (459)
                      ++||||.+|++|+|+||+++++++++.++.+...+....+..+.+++.++|.++..+|++.++.+.|.++++++++++++
T Consensus       238 ~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~  317 (394)
T 2ay1_A          238 AASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLR  317 (394)
T ss_dssp             EEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999954335676666666655544445555668888888888888776666667788999999999


Q ss_pred             HHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHHHHHH
Q 012647          379 VRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDS  454 (459)
Q Consensus       379 ~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~l~~~  454 (459)
                      +++++.+.|+ +++.+.++.+..+++|+|+|++++.+.+.++++++||.+.+|.||+++..+++++++++++|+++
T Consensus       318 ~~~~l~~~L~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~gi~v~~~~Ris~~~~~~~~i~~~~~~l~~~  392 (394)
T 2ay1_A          318 LREQLAGELR-DLSGSDRFGFVAEHRGMFSRLGATPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIEV  392 (394)
T ss_dssp             HHHHHHHHHH-HHHTSSTTTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-hcCCCCCeeEEcCCceEEEeeCCCHHHHHHHHHhCCEEecCCCeEEeecCCHhhHHHHHHHHHHc
Confidence            9999999999 77522236777788899999999877788888778999999899999866899999999999875

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=100.00  E-value=4.9e-48  Score=387.97  Aligned_cols=381  Identities=23%  Similarity=0.312  Sum_probs=302.6

Q ss_pred             CCCCCCCCccchhHHHhhhCC----CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHH
Q 012647           61 GVTMAPPDPILGVSEAFKADT----DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTA  136 (459)
Q Consensus        61 ~~~~~~~~~i~~~~~~~~~~~----~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia  136 (459)
                      +....++++++.+.+.++++.    +.++|+|+.|.|.|.+..+++++.+.+++.+..... ...|.+..|.+++|++++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia   90 (418)
T 3rq1_A           12 AKGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSE-HVGYAPIAGIPDFLCAAE   90 (418)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHHHCGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHH-HHSCCCTTCCHHHHHHHH
T ss_pred             cCCCCCCchHHHHHHHHHhhhhhhcCCCeEECCCCcccCCCCCccccHHHHHHHHHhcccc-cCCCCCCCChHHHHHHHH
Confidence            334456777877776664332    348999999999887766667899999887755432 267999999999999999


Q ss_pred             HHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCH
Q 012647          137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF  216 (459)
Q Consensus       137 ~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~  216 (459)
                      +++.+.++.. .+++|++  |+||++++.++.  ...+.+||+|++++|+|..|...++..|++++.+|++++ ++++|+
T Consensus        91 ~~~~~~~~~~-~~~~i~~--t~g~~~al~~~~--~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~  164 (418)
T 3rq1_A           91 KECFGNFRPE-GHIRSIA--TAGGTGGIHHLI--HNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDE-HNNFNH  164 (418)
T ss_dssp             HHHHGGGCCS-SEEEEEE--ESHHHHHHHHHH--HHHSCTTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCT-TSSBCH
T ss_pred             HHHhcccCcc-ccccEEE--CCchHHHHHHHH--HHhcCCCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCC-CCCcCH
Confidence            9987665432 1338988  999999999984  444779999999999999999999999999999998633 478999


Q ss_pred             HHHHHHHHcC--CCCcEEEEeCCC-CCCCCCCCCHHHHHHHHHHHH------hcCCeeEEeccCCCCCCCCCCCChhHHH
Q 012647          217 EGMIADIKAA--PGGSFILLHGCA-HNPTGIDPTPEQWEKIADVIQ------EKNHIPFFDVAYQGFASGSLDNDASSVR  287 (459)
Q Consensus       217 e~l~~~i~~~--~~~~~~ii~~~p-~NPTG~~~s~~~l~~i~~l~~------~~~~~ii~Deay~~~~~~~~~~~~~~~~  287 (459)
                      +.+++++++.  ++.++++++++| |||||.+++.+++++|+++|+      +||+++|+||+|.++.+.+     ....
T Consensus       165 ~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~-----~~~~  239 (418)
T 3rq1_A          165 EAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEK-----DEVR  239 (418)
T ss_dssp             HHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCH-----HHHH
T ss_pred             HHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCCh-----HHHH
Confidence            9999998741  113447888999 999999999999999999999      8999999999999998642     1111


Q ss_pred             HHHh----cCCe--EEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhh
Q 012647          288 LFAT----RGME--LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPAL  361 (459)
Q Consensus       288 ~~~~----~~~~--~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~  361 (459)
                      .+..    ..++  +++++||||.||++|+|+||++++++++++++.+........+..+.+++.++|.++..+|++.++
T Consensus       240 ~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~  319 (418)
T 3rq1_A          240 AFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAK  319 (418)
T ss_dssp             GGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHH
Confidence            2222    1233  589999999999999999999654568887766665443333334557888999999999999877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC-CHHHHHHHHhcccEEEcCCC---cEEEc
Q 012647          362 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-NKAQSDNMTNKWHVYMTKDG---RISLA  437 (459)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-~~~~~~~ll~~~gI~v~~gg---Ris~~  437 (459)
                      .+.|.+++++++++++++++++.+.|+ ++|    +++..+++|+|+|+++ +.+.+.++++++||.+.||+   |||++
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~iRis~~  394 (418)
T 3rq1_A          320 FKEYEAERNCYYQLIRDRADIFKQEAA-QVG----LPMLPYRGGFFITIPTDSANAICEELKKEHIYVIALANGIRIAAC  394 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHT----CCCCCCCSSSEEEEECTTHHHHHHHHHHTTEECEECSSEEEEEGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC----CCCCCCCceEEEEcCCCCHHHHHHHHHhCCEEEecCCCCeEEEEe
Confidence            777888888999999999999999999 887    5788899999999865 34333345566799999986   99998


Q ss_pred             cCChhhHHHHHHHHHHHHhhc
Q 012647          438 GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       438 ~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      ..+++++++++++|+++++++
T Consensus       395 ~~~~~~i~~~~~~l~~~l~~~  415 (418)
T 3rq1_A          395 GIPKCQMTGLAEKIYNAMKSL  415 (418)
T ss_dssp             GSCHHHHTTHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHHHHHH
Confidence            669999999999999999875

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=100.00  E-value=1.1e-47  Score=386.60  Aligned_cols=375  Identities=13%  Similarity=0.133  Sum_probs=286.9

Q ss_pred             cCCCCCCCCCccchhHHHhhhCCCC--CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHH
Q 012647           59 FEGVTMAPPDPILGVSEAFKADTDE--KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTA  136 (459)
Q Consensus        59 ~~~~~~~~~~~i~~~~~~~~~~~~~--~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia  136 (459)
                      ++.+...++++|+++.+.++.+.++  ++|+|+.|.| +..+..++++.+.+++.+.+.......|.+..|.+++|++++
T Consensus        28 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~l~~g~~-~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la  106 (427)
T 3dyd_A           28 PSDMAKKTFNPIRAIVDNMKVKPNPNKTMISLSIGDP-TVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIA  106 (427)
T ss_dssp             CCC----------------CCCCCTTSCCEECCCSCT-TTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHH
T ss_pred             hhhHhhcccchHHHHHHHHhhcccCCCCEEeCCCcCC-CccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHH
Confidence            5566777888999998888766543  5699999997 433334458999999999887654578999999999999999


Q ss_pred             HHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCH
Q 012647          137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF  216 (459)
Q Consensus       137 ~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~  216 (459)
                      +++.+. +..+++++|++  |+||+++++++.+.  .+.+||+|++++|+|.+|...++..|++++.+|+++++++.+|+
T Consensus       107 ~~~~~~-~~~~~~~~v~~--t~g~t~al~~~~~~--l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~  181 (427)
T 3dyd_A          107 SYYHCP-EAPLEAKDVIL--TSGCSQAIDLCLAV--LANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDL  181 (427)
T ss_dssp             HHHCBT-TBCCCGGGEEE--ESSHHHHHHHHHHH--HCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECH
T ss_pred             HHHhhc-CCCCChHHEEE--ecCcHHHHHHHHHH--hcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCH
Confidence            998766 77777899999  99999999998444  36799999999999999999999999999999997667789999


Q ss_pred             HHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeE
Q 012647          217 EGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL  296 (459)
Q Consensus       217 e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~  296 (459)
                      +.+++++++   +++++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++.  ...++.. .....++
T Consensus       182 ~~l~~~l~~---~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~--~~~~~~~-~~~~~~v  255 (427)
T 3dyd_A          182 KQLEYLIDE---KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDC--KYEPLAT-LSTDVPI  255 (427)
T ss_dssp             HHHHSSCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSC--CCCCGGG-GCSSCCE
T ss_pred             HHHHHHhcc---CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCC--cCccHHH-hCCCCcE
Confidence            999998875   678888999999999999999999999999999999999999999987542  1112222 2334578


Q ss_pred             EEEEcCCcCcccCCCCcceEEEEeCCh--hHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 012647          297 LVAQSYSKNLGLYAERIGAMNVVCSSS--DLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAG  374 (459)
Q Consensus       297 i~~~S~SK~~~~~G~RiG~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~  374 (459)
                      ++++||||.|+++|+|+||+++  .++  ...+.+.+.+....+. +.+++.++|.++..+|++..     .+.+++.++
T Consensus       256 i~~~S~sK~~~~~G~riG~~~~--~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~a~~~~L~~~~-----~~~~~~~~~  327 (427)
T 3dyd_A          256 LSCGGLAKRWLVPGWRLGWILI--HDRRDIFGNEIRDGLVKLSQR-ILGPCTIVQGALKSILCRTP-----GEFYHNTLS  327 (427)
T ss_dssp             EEEEESTTTSSCGGGCCEEEEE--ECSTTSSHHHHHHHHHHHHHH-HCCSCHHHHHHHHHHHHHSC-----HHHHHHHHH
T ss_pred             EEEeeccccCCCcCcceEEEEe--cCcchhhHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcC-----HHHHHHHHH
Confidence            9999999999999999999965  331  1111244444433322 34788889988888876321     233678889


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCC----------HHHHHHHHhcccEEEcCCC--------cEEE
Q 012647          375 RIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN----------KAQSDNMTNKWHVYMTKDG--------RISL  436 (459)
Q Consensus       375 ~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~----------~~~~~~ll~~~gI~v~~gg--------Ris~  436 (459)
                      +++++++++.+.|+ +++   ++.+..+++|+|+|++++          .+++++|++++||.+.||+        ||++
T Consensus       328 ~~~~~~~~l~~~L~-~~~---g~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~  403 (427)
T 3dyd_A          328 FLKSNADLCYGALA-AIP---GLRPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVI  403 (427)
T ss_dssp             HHHHHHHHHHHHHH-HST---TEEEECCSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEES
T ss_pred             HHHHHHHHHHHHHh-cCC---CceecCCCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEE
Confidence            99999999999999 872   267778899999987543          4667888877899999873        9999


Q ss_pred             ccCChhhHHHHHHHHHHHHhhc
Q 012647          437 AGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       437 ~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      +. +++++++++++|.++++++
T Consensus       404 ~~-~~e~i~~~l~~l~~~l~~~  424 (427)
T 3dyd_A          404 TV-PEVMMLEACSRIQEFCEQH  424 (427)
T ss_dssp             CS-CHHHHHHHHHHHHHHHHHH
T ss_pred             CC-CHHHHHHHHHHHHHHHHHh
Confidence            85 9999999999999999865

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=100.00  E-value=8.5e-48  Score=382.05  Aligned_cols=359  Identities=17%  Similarity=0.159  Sum_probs=285.0

Q ss_pred             CCCCCccchhHHHhhhC--CCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhc
Q 012647           64 MAPPDPILGVSEAFKAD--TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFG  141 (459)
Q Consensus        64 ~~~~~~i~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~  141 (459)
                      ..+++++.++...++..  .++++|+|+.|.|    ..++ ++.+.+++.+.+.... ..|++..|.+++|+++++++..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~-~~y~~~~g~~~lr~~ia~~~~~   83 (385)
T 1b5p_A           10 AMKPSATVAVNAKALELRRQGVDLVALTAGEP----DFDT-PEHVKEAARRALAQGK-TKYAPPAGIPELREALAEKFRR   83 (385)
T ss_dssp             HCCCCHHHHHHHHHHHHHHTTCCCEECCCSSC----SSCC-CHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHHH
T ss_pred             hcCcchHHHHHHHHHHHHhcCCCEEEecCCCC----CCCC-CHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHHH
Confidence            34556666555544321  2467999999987    3333 6889999888876543 6798888999999999999988


Q ss_pred             CCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHH
Q 012647          142 ADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA  221 (459)
Q Consensus       142 ~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~  221 (459)
                      .+|..+++++|++  |+|++++++++.  ...+.+||+|++++|+|..|...++..|++++.+|+++++++.+|++++++
T Consensus        84 ~~g~~~~~~~i~~--t~g~~~al~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~  159 (385)
T 1b5p_A           84 ENGLSVTPEETIV--TVGGSQALFNLF--QAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRR  159 (385)
T ss_dssp             TTCCCCCGGGEEE--ESHHHHHHHHHH--HHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHT
T ss_pred             HhCCCCChHHEEE--cCChHHHHHHHH--HHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHH
Confidence            8888788999999  999999999984  334779999999999999999999999999999999644578899999999


Q ss_pred             HHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEc
Q 012647          222 DIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS  301 (459)
Q Consensus       222 ~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S  301 (459)
                      ++++   +++++++++||||||.+++.+++++|+++|++||++||+||+|.++.+++ .  ..++..+ .. +++++++|
T Consensus       160 ~l~~---~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~--~~~~~~~-~~-~~~i~~~s  231 (385)
T 1b5p_A          160 AITP---RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-E--HFSPGRV-AP-EHTLTVNG  231 (385)
T ss_dssp             TCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-C--CCCGGGT-CT-TTEEEEEE
T ss_pred             hcCC---CCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-C--CCCHHHc-CC-CCEEEEEe
Confidence            8865   67888889999999999999999999999999999999999999988753 1  1122222 22 67999999


Q ss_pred             CCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 012647          302 YSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQ  381 (459)
Q Consensus       302 ~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~  381 (459)
                      |||.||++|+|+||+++   +++.++.+..    .....+.+++.++|.++..+|++....   .+++++.+++++++++
T Consensus       232 ~SK~~~~~G~RiG~~~~---~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~~~~~  301 (385)
T 1b5p_A          232 AAKAFAMTGWRIGYACG---PKEVIKAMAS----VSRQSTTSPDTIAQWATLEALTNQEAS---RAFVEMAREAYRRRRD  301 (385)
T ss_dssp             STTTTTCGGGCCEEEEC---CHHHHHHHHH----HHHTTTCSCCHHHHHHHHHHHHCHHHH---HHHHHHHHHHHHHHHH
T ss_pred             chhhcCCcccceEEEEe---CHHHHHHHHH----HHhhccCCCCHHHHHHHHHHHhCCCcc---hHHHHHHHHHHHHHHH
Confidence            99999999999999965   7775544433    333334577888998888888652111   2347889999999999


Q ss_pred             HHHHHHhhccCCCCCcccccCCcceeeecCC-----CH-HHHHHHHhcccEEEcCC------C--cEEEccCChhhHHHH
Q 012647          382 KLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD------G--RISLAGLSLAKCEYL  447 (459)
Q Consensus       382 ~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g------g--Ris~~~~~~e~i~~~  447 (459)
                      ++.+.|+ ++|    +.+..+++++|+|+.+     +. ++.+.|+ ++||.+.||      +  |||++. ++++++++
T Consensus       302 ~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gv~v~~g~~f~~~~~iRis~~~-~~~~i~~~  374 (385)
T 1b5p_A          302 LLLEGLT-ALG----LKAVRPSGAFYVLMDTSPIAPDEVRAAERLL-EAGVAVVPGTDFAAFGHVRLSYAT-SEENLRKA  374 (385)
T ss_dssp             HHHHHHH-HHT----CCBCCCSBTTEEEEECTTTCSSHHHHHHHHH-HTTEECEESGGGTCTTEEEEECCS-CHHHHHHH
T ss_pred             HHHHHHH-HCC----CeecCCCeeEEEEEecCCCCCCHHHHHHHHH-HCCeEEecccccCCCCeEEEEecC-CHHHHHHH
Confidence            9999999 776    5778889999988654     34 4566776 579999987      2  999985 89999999


Q ss_pred             HHHHHHHHhh
Q 012647          448 ADAIIDSYHN  457 (459)
Q Consensus       448 ~~~l~~~~~~  457 (459)
                      +++|.+++++
T Consensus       375 l~~l~~~l~~  384 (385)
T 1b5p_A          375 LERFARVLGR  384 (385)
T ss_dssp             HHHGGGGC--
T ss_pred             HHHHHHHHhh
Confidence            9999887653

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=100.00  E-value=1.6e-46  Score=377.36  Aligned_cols=371  Identities=15%  Similarity=0.098  Sum_probs=294.4

Q ss_pred             ccCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CCCCCCCcccHHHHHHHH
Q 012647           58 RFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTA  136 (459)
Q Consensus        58 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~~~g~~~lr~aia  136 (459)
                      .++++...+++.+.++.+...   ++++|+|+.|.|    ..++ ++.+.+++.+.+.... ...|++..|.+++|++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~---~~~~i~l~~g~~----~~~~-~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la   77 (422)
T 3fvs_A            6 QARRLDGIDYNPWVEFVKLAS---EHDVVNLGQGFP----DFPP-PDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILA   77 (422)
T ss_dssp             SCGGGTTCCCCHHHHHHHHHH---TSCCEECCCSSC----SSCC-CHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHH
T ss_pred             HHHHhhccCccHHHHHHHHhh---cCCceEeCCCCC----CCCC-CHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHH
Confidence            455566667777777766554   358999999997    4443 8999999999886532 368988889999999999


Q ss_pred             HHHhcCCCCcccc-CceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeec-------
Q 012647          137 ELLFGADNSVLKE-QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD-------  208 (459)
Q Consensus       137 ~~l~~~~~~~~~~-~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~-------  208 (459)
                      +++...+|..+++ ++|++  |+|++++++++.+  ..+.+||+|+++.|+|..|...++..|++++.+|++.       
T Consensus        78 ~~~~~~~g~~~~~~~~i~~--~~g~~~a~~~~~~--~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~  153 (422)
T 3fvs_A           78 SFFGELLGQEIDPLRNVLV--TVGGYGALFTAFQ--ALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGE  153 (422)
T ss_dssp             HHHHHHHTCCCCHHHHEEE--ESHHHHHHHHHHH--HHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSS
T ss_pred             HHHHHhhCCCCCCCCcEEE--ECChHHHHHHHHH--HHcCCCCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccc
Confidence            9998777777778 69999  9999999999843  3367999999999999999999999999999999864       


Q ss_pred             ---CCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhH
Q 012647          209 ---PKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASS  285 (459)
Q Consensus       209 ---~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~  285 (459)
                         +.++.+|++.+++++++   +++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...+
T Consensus       154 ~~~~~~~~~d~~~l~~~~~~---~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~  228 (422)
T 3fvs_A          154 LGSSSNWQLDPMELAGKFTS---RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGH--QHIS  228 (422)
T ss_dssp             CCBGGGSBCCHHHHHTTCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCC
T ss_pred             cccccCCCCCHHHHHhhcCC---CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC--CCCC
Confidence               13567899999998875   788888999999999999999999999999999999999999999887642  1222


Q ss_pred             HHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhH-HH
Q 012647          286 VRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALF-DE  364 (459)
Q Consensus       286 ~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~  364 (459)
                      +..+....++++++.||||.||++|+|+||+++   +++.++.+.    ........+++.++|.++...|.+.... ..
T Consensus       229 ~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~  301 (422)
T 3fvs_A          229 IASLPGMWERTLTIGSAGKTFSATGWKVGWVLG---PDHIMKHLR----TVHQNSVFHCPTQSQAAVAESFEREQLLFRQ  301 (422)
T ss_dssp             GGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEEC---CHHHHHHHH----HHHHTTTCCCCHHHHHHHHHHHHHHHHTTTC
T ss_pred             hhhcccccCcEEEEecchhccCCccceEEEEEe---CHHHHHHHH----HHHhhccCCCCcHHHHHHHHHHhhccccccc
Confidence            222222336889999999999999999999865   777554443    3333334467788888887776531000 00


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCH------------------HHHHHHHhcccE
Q 012647          365 WKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNK------------------AQSDNMTNKWHV  426 (459)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~------------------~~~~~ll~~~gI  426 (459)
                      +.+++++.+++++++++++.+.|+ ++|    +.+..+++|+|+|+++..                  +++..+++++||
T Consensus       302 ~~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv  376 (422)
T 3fvs_A          302 PSSYFVQFPQAMQRCRDHMIRSLQ-SVG----LKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGL  376 (422)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHH-TTT----CEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HcC----CeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCE
Confidence            124467889999999999999999 886    677888999999986532                  567788887899


Q ss_pred             EEcCC-------------C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          427 YMTKD-------------G--RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       427 ~v~~g-------------g--Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      .+.||             +  |||++. +++++++++++|+++++++
T Consensus       377 ~v~~g~~f~~~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~l~~l  422 (422)
T 3fvs_A          377 VAIPVSIFYSVPHQKHFDHYIRFCFVK-DEATLQAMDEKLRKWKVEL  422 (422)
T ss_dssp             ECEEGGGGSCHHHHTTSCSEEEEECCC-CHHHHHHHHHHHHHHHHCC
T ss_pred             EEeCcHHhcCCcCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHhhC
Confidence            99874             2  999998 9999999999999998764

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-45  Score=370.94  Aligned_cols=359  Identities=16%  Similarity=0.132  Sum_probs=282.2

Q ss_pred             CCCCccchhHHHhhh------CCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHH
Q 012647           65 APPDPILGVSEAFKA------DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL  138 (459)
Q Consensus        65 ~~~~~i~~~~~~~~~------~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~  138 (459)
                      .+++.+..+.+.+.+      ..++++|||+.|.|    ..++ ++.+.+++.+.++.....+|++..|.+++|++++++
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~----~~~~-~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~  107 (447)
T 3b46_A           33 TAKDVWSLTNEAAAKAANNSKNQGRELINLGQGFF----SYSP-PQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKL  107 (447)
T ss_dssp             CCCCHHHHHHHHHHHHCCC---TTSCCEECCCCSC----SSCC-CHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHH
T ss_pred             cCccHHHHHHHHHHhhccchhccCCCeEEccCCCC----CCCC-CHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHH
Confidence            455556555544421      13568999999987    3333 789999999888642236898888999999999999


Q ss_pred             HhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCC--------
Q 012647          139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK--------  210 (459)
Q Consensus       139 l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~--------  210 (459)
                      +...+|..+++++|++  |+|++++++++.  ...+.+||+|++++|+|..|...++..|++++.+|+++++        
T Consensus       108 l~~~~g~~~~~~~v~~--t~G~~~al~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~  183 (447)
T 3b46_A          108 YSPIYNTELKAENVTV--TTGANEGILSCL--MGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTR  183 (447)
T ss_dssp             HTTTTTSCCCGGGEEE--ESHHHHHHHHHH--HHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBC
T ss_pred             HHHhcCCCCChhhEEE--eCCHHHHHHHHH--HHHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCcccccccccc
Confidence            9887787778889999  999999999984  3347799999999999999999999999999999986432        


Q ss_pred             --CCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH
Q 012647          211 --TVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (459)
Q Consensus       211 --~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~  288 (459)
                        ++.+|++.|++++++   +++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.   ..++..
T Consensus       184 ~~~~~~d~~~l~~~l~~---~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~---~~~~~~  257 (447)
T 3b46_A          184 GEEWTIDFEQFEKAITS---KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDS---FTRIAT  257 (447)
T ss_dssp             STTSEECHHHHHTTCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC---CCCGGG
T ss_pred             ccCcccCHHHHHHhhcc---CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCC---CcCHHH
Confidence              578999999998864   778888899999999999999999999999999999999999999887541   112211


Q ss_pred             H-HhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHH
Q 012647          289 F-ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA  367 (459)
Q Consensus       289 ~-~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~  367 (459)
                      + .+..++++++.|+||.|+++|||+||+  ++.++++++.+...    ......+++.++|.++..+|++...    .+
T Consensus       258 ~~~~~~~~~i~i~S~sK~~~~~G~riG~~--~~~~~~l~~~l~~~----~~~~~~~~~~~~~~a~~~aL~~~~~----~~  327 (447)
T 3b46_A          258 LSPEIGQLTLTVGSAGKSFAATGWRIGWV--LSLNAELLSYAAKA----HTRICFASPSPLQEACANSINDALK----IG  327 (447)
T ss_dssp             SCHHHHTTEEEEEEHHHHTTCTTSCCEEE--ECSCHHHHHHHHHH----HHHHTSSCCHHHHHHHHHHHHHHHH----HT
T ss_pred             cCCCCCCcEEEEecCchhcCCcchhhEEE--EeCCHHHHHHHHHH----HhhccCCCChHHHHHHHHHHhCCcc----hH
Confidence            1 122357999999999999999999998  44367755544432    2222336678888888777754311    23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCC------------------H--HHHHHHHhcccEE
Q 012647          368 EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN------------------K--AQSDNMTNKWHVY  427 (459)
Q Consensus       368 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~------------------~--~~~~~ll~~~gI~  427 (459)
                      ++++++++++++++++.+.|+ ++|    +++..+++|+|+|+.+.                  .  +++++|++++||.
T Consensus       328 ~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~  402 (447)
T 3b46_A          328 YFEKMRQEYINKFKIFTSIFD-ELG----LPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVV  402 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHT----CCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HCC----CeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEE
Confidence            467899999999999999999 887    57778899999987542                  1  4566787778999


Q ss_pred             EcCC-------------C--cEEEccCChhhHHHHHHHHHHH
Q 012647          428 MTKD-------------G--RISLAGLSLAKCEYLADAIIDS  454 (459)
Q Consensus       428 v~~g-------------g--Ris~~~~~~e~i~~~~~~l~~~  454 (459)
                      +.||             +  |||++. +++++++++++|.++
T Consensus       403 v~pg~~f~~~~~~~~~~~~iRls~~~-~~e~l~~~~~~l~~~  443 (447)
T 3b46_A          403 AIPPTEFYIKEHEKAAENLLRFAVCK-DDAYLENAVERLKLL  443 (447)
T ss_dssp             CBCGGGGSCGGGGGGGTTEEEEECCS-CHHHHHHHHHHGGGG
T ss_pred             EECchHhCCCCccCCCCCEEEEEEeC-CHHHHHHHHHHHHHH
Confidence            9875             2  999987 899999999999873

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=100.00  E-value=4.2e-44  Score=366.97  Aligned_cols=341  Identities=13%  Similarity=0.095  Sum_probs=274.0

Q ss_pred             cHHHHHHHHHHhhcC---CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHh-CCCC
Q 012647          103 LDVVKKAENLMLERG---ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY-FPGA  178 (459)
Q Consensus       103 ~~~v~~a~~~~~~~~---~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~-~~gd  178 (459)
                      |+.+.+++.+.+...   ....|.+..|.+++|+++++++...+|..+++++|++  |+|+++++.++..  ..+ .+||
T Consensus       108 p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~~~--~l~~~~gd  183 (500)
T 3tcm_A          108 SADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFL--TDGASPGVHLMMQ--LLIRNEKD  183 (500)
T ss_dssp             CHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEE--ESSSHHHHHHHHH--HHCCSTTE
T ss_pred             CHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEE--cCCHHHHHHHHHH--HHcCCCCC
Confidence            555666666666541   3578999999999999999999877787788999999  9999999999843  335 6999


Q ss_pred             EEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 012647          179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIA  255 (459)
Q Consensus       179 ~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~ii~~~p~NPTG~~~s~~~l~~i~  255 (459)
                      +|++++|+|..|...++..|++++.+|++++++|++|++.|++++++.   ..+++++++++||||||.+++.+++++|+
T Consensus       184 ~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~  263 (500)
T 3tcm_A          184 GILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIV  263 (500)
T ss_dssp             EEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             EEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHH
Confidence            999999999999999999999999999986667899999999999751   12567788889999999999999999999


Q ss_pred             HHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH------hcCCeEEEEEcCCcCc-ccCCCCcceEEEEeCChhHHHH
Q 012647          256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA------TRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAAR  328 (459)
Q Consensus       256 ~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~  328 (459)
                      ++|++||+++|+||+|+++.+++. ....++..+.      ....++++++||||.| |++|+|+||+++...+++.++.
T Consensus       264 ~la~~~~~~li~Deay~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~  342 (500)
T 3tcm_A          264 KFCKNEGLVLLADEVYQENIYVDN-KKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQ  342 (500)
T ss_dssp             HHHHHHTCEEEEECTTTTCBCCTT-CCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHH
T ss_pred             HHHHHcCCEEEEecCccccccCCC-CCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHH
Confidence            999999999999999999887531 1222333222      1224689999999999 8999999999664457775555


Q ss_pred             HHHHHHhhccccccCCchHHHHHHHHHhCCh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCc
Q 012647          329 VKSQLKRLARPMYSNPPVHGARIVANVVGNP----ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQI  404 (459)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~  404 (459)
                      +....     ..+.+++..+|.++..+++++    ...+.|.+++++++++++++++++.+.|+ +++   ++++..+++
T Consensus       343 l~~~~-----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~-~~~---g~~~~~~~g  413 (500)
T 3tcm_A          343 IYKIA-----SVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFN-KLE---GITCNEAEG  413 (500)
T ss_dssp             HHHHH-----HTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TST---TEECCCCCB
T ss_pred             HHHHH-----hcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC---CcEEecCCe
Confidence            54322     234578888999998888743    34456778889999999999999999999 872   278899999


Q ss_pred             ceeeecCC--CH---------------HHHHHHHhcccEEEcCC-------C----cEEEccCChhhHHHHHHHHHHHHh
Q 012647          405 GMFSFTGL--NK---------------AQSDNMTNKWHVYMTKD-------G----RISLAGLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       405 g~f~~~~l--~~---------------~~~~~ll~~~gI~v~~g-------g----Ris~~~~~~e~i~~~~~~l~~~~~  456 (459)
                      |+|+|+++  ..               .++.++++++||.++||       |    ||+++ .+++++++++++|+++++
T Consensus       414 ~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~i~~l~~~~~  492 (500)
T 3tcm_A          414 AMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL-PQEDKIPAVISRFTVFHE  492 (500)
T ss_dssp             TTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC-SCTTTHHHHHHHHHHHHH
T ss_pred             EEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHHHH
Confidence            99999543  22               12567788789999976       2    99999 499999999999999887


Q ss_pred             hc
Q 012647          457 NV  458 (459)
Q Consensus       457 ~~  458 (459)
                      ++
T Consensus       493 ~~  494 (500)
T 3tcm_A          493 AF  494 (500)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=100.00  E-value=1.1e-44  Score=360.08  Aligned_cols=360  Identities=18%  Similarity=0.179  Sum_probs=285.8

Q ss_pred             CCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCC
Q 012647           65 APPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADN  144 (459)
Q Consensus        65 ~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~  144 (459)
                      .+++++..+.+.++..  +++|+|+.|.+    ..+ .++.+.+++.+.++... ..|++..|..++|+++++++...+|
T Consensus        10 ~~~~~~~~~~~~~~~~--~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~~~-~~y~~~~g~~~l~~~la~~~~~~~g   81 (389)
T 1gd9_A           10 VSASEIRKLFDIAAGM--KDVISLGIGEP----DFD-TPQHIKEYAKEALDKGL-THYGPNIGLLELREAIAEKLKKQNG   81 (389)
T ss_dssp             SCCCHHHHHHHHHHTC--SSCEECCCCSC----SSC-CCHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             CChhHHHHHHHHHhhh--cCeEecCCCCC----CCC-CCHHHHHHHHHHHhCCC-CCCCCCCCcHHHHHHHHHHHHHHhC
Confidence            3566777777666543  57999999987    333 37899999998886543 6798888999999999999876656


Q ss_pred             CccccCc-eEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHH
Q 012647          145 SVLKEQR-VATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI  223 (459)
Q Consensus       145 ~~~~~~~-i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i  223 (459)
                      ..+++++ |++  |+||+++++++.  ...+.+||+|++++|+|..+...++..|++++.+|+++++++.+|++.+++++
T Consensus        82 ~~~~~~~~v~~--~~g~~~a~~~~~--~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l  157 (389)
T 1gd9_A           82 IEADPKTEIMV--LLGANQAFLMGL--SAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYV  157 (389)
T ss_dssp             CCCCTTTSEEE--ESSTTHHHHHHH--TTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHC
T ss_pred             CCCCCCCeEEE--cCChHHHHHHHH--HHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhc
Confidence            6566888 999  999999999983  33356999999999999999999999999999999864346789999999998


Q ss_pred             HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCC
Q 012647          224 KAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS  303 (459)
Q Consensus       224 ~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S  303 (459)
                      ++   +++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+....++++++.|||
T Consensus       158 ~~---~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~s  232 (389)
T 1gd9_A          158 TD---KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDA--RHYSIASLDGMFERTITVNGFS  232 (389)
T ss_dssp             CT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSTTCGGGEEEEEEST
T ss_pred             Cc---CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCC--CCCCHhhccCCCCCEEEEecCh
Confidence            75   677888899999999999999999999999999999999999999886531  0112212211135789999999


Q ss_pred             cCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012647          304 KNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKL  383 (459)
Q Consensus       304 K~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l  383 (459)
                      |.+|++|+|+||+++   +++.++.+.    ........+++.++|.++..+|++...    .+++++.+++++++++++
T Consensus       233 K~~~~~G~r~G~~~~---~~~~~~~l~----~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~~~~l  301 (389)
T 1gd9_A          233 KTFAMTGWRLGFVAA---PSWIIERMV----KFQMYNATCPVTFIQYAAAKALKDERS----WKAVEEMRKEYDRRRKLV  301 (389)
T ss_dssp             TTTTCGGGCCEEEEC---CHHHHHHHH----HHHTTTTCSCCHHHHHHHHHHHTCHHH----HHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCcccceEEEEE---CHHHHHHHH----HHHhhhccCCCHHHHHHHHHHHhCCCc----chHHHHHHHHHHHHHHHH
Confidence            999999999999965   777444443    333333446778888888888876421    125788899999999999


Q ss_pred             HHHHhhccCCCCCcccccCCcceeeecCC-----CH-HHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHH
Q 012647          384 FDSLSAKDKSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYL  447 (459)
Q Consensus       384 ~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~  447 (459)
                      .+.|+ ++|    +++..+++|+|+|+.+     +. ++.+.|++++||.+.||        +  ||+++. ++++++++
T Consensus       302 ~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~i~~~  375 (389)
T 1gd9_A          302 WKRLN-EMG----LPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT-AYEKLEEA  375 (389)
T ss_dssp             HHHHH-HTT----CCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS-CHHHHHHH
T ss_pred             HHHHH-HcC----CeecCCCeeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHH
Confidence            99999 876    5777788899988754     33 45667775679999875        2  999998 99999999


Q ss_pred             HHHHHHHHhhc
Q 012647          448 ADAIIDSYHNV  458 (459)
Q Consensus       448 ~~~l~~~~~~~  458 (459)
                      +++|.+++++.
T Consensus       376 l~~l~~~~~~~  386 (389)
T 1gd9_A          376 MDRMERVLKER  386 (389)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999998764

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=100.00  E-value=2.2e-44  Score=358.18  Aligned_cols=356  Identities=18%  Similarity=0.139  Sum_probs=276.5

Q ss_pred             CCCCCCCCccchhHH---HhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHH
Q 012647           61 GVTMAPPDPILGVSE---AFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE  137 (459)
Q Consensus        61 ~~~~~~~~~i~~~~~---~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~  137 (459)
                      ++...+++++.++..   .++.+ ++++|||+.|.+    ..+. +|.+.+++.+.+.... ..|++..|.+++|+++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~i~l~~g~~----~~~~-~~~v~~a~~~~~~~~~-~~y~~~~g~~~lr~~ia~   79 (391)
T 3h14_A            7 SRSAVDPFIVMDVMEAARRAEEA-GRRIIHMEVGQP----GTGA-PRGAVEALAKSLETDA-LGYTVALGLPALRQRIAR   79 (391)
T ss_dssp             STTCCCCCTTHHHHHHHHHHHHT-TCCCEECCCSSC----SSCS-CHHHHHHHHHHHC-----------CCHHHHHHHHH
T ss_pred             hHhhcCcchHHHHHHHHHHHHhc-CCCeEEccCCCC----CCCC-CHHHHHHHHHHHhcCC-CCCCCCCChHHHHHHHHH
Confidence            444445555555544   33333 468999999987    4443 7889999999886543 789888899999999999


Q ss_pred             HHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHH
Q 012647          138 LLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFE  217 (459)
Q Consensus       138 ~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e  217 (459)
                      ++...+|..+++++|++  |+|++++++++.  ...+.+||+|+++.|+|..+...++..|++++.+|++++.++.+|++
T Consensus        80 ~~~~~~g~~~~~~~v~~--t~g~~~al~~~~--~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  155 (391)
T 3h14_A           80 LYGEWYGVDLDPGRVVI--TPGSSGGFLLAF--TALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPA  155 (391)
T ss_dssp             HHHHHHCCCCCGGGEEE--ESSHHHHHHHHH--HHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHH
T ss_pred             HHHHHhCCCCCHHHEEE--ecChHHHHHHHH--HHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHH
Confidence            99877777778999999  999999999984  34467999999999999999999999999999999975556788999


Q ss_pred             HHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEE
Q 012647          218 GMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (459)
Q Consensus       218 ~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i  297 (459)
                      +++++      +++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++...   +.   ....++++
T Consensus       156 ~l~~~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~---~~---~~~~~~~i  223 (391)
T 3h14_A          156 DFAGL------DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAV---TA---LELTDECY  223 (391)
T ss_dssp             HHTTS------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCC---CG---GGTCSSSE
T ss_pred             HHHhc------CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCc---Ch---hhcCCCEE
Confidence            88765      35567778999999999999999999999999999999999999988764211   11   12256889


Q ss_pred             EEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012647          298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  377 (459)
Q Consensus       298 ~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  377 (459)
                      +++||||.+|++|+|+||+++   +++..+.+...    ......+++.++|.++...|...       +.+++.+++++
T Consensus       224 ~~~s~sK~~g~~G~r~G~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~  289 (391)
T 3h14_A          224 VINSFSKYFSMTGWRVGWMVV---PEDQVRVVERI----AQNMFICAPHASQVAALAALDCD-------AELQANLDVYK  289 (391)
T ss_dssp             EEEESSSTTCCTTSCCEEEEC---CGGGHHHHHHH----HHHTTCCCCHHHHHHHHHHTTCH-------HHHHHHHHHHH
T ss_pred             EEEechhccCCccceeEEEEe---CHHHHHHHHHH----HhhhccCCCHHHHHHHHHHhCCh-------HHHHHHHHHHH
Confidence            999999999999999999965   77755554433    22334477888888887777732       44688899999


Q ss_pred             HHHHHHHHHHhhccCCCCCcccccCCcceeeecCC-----CH-HHHHHHHhcccEEEcCC---------C--cEEEccCC
Q 012647          378 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD---------G--RISLAGLS  440 (459)
Q Consensus       378 ~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g---------g--Ris~~~~~  440 (459)
                      ++++.+.+.|+ ++|.   ..+..+++++|+|+.+     +. +++++|++++||.+.||         +  |||++. +
T Consensus       290 ~~~~~l~~~l~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~-~  364 (391)
T 3h14_A          290 ANRKLMLERLP-KAGF---TRIAPPDGAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR-A  364 (391)
T ss_dssp             HHHHHHHHHHH-HHTC---CCBCCCCBTTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS-C
T ss_pred             HHHHHHHHHHH-HcCC---CcccCCCeeEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC-C
Confidence            99999999999 8863   2345788889988743     33 55678888779999874         1  999998 8


Q ss_pred             hhhHHHHHHHHHHHHhhc
Q 012647          441 LAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       441 ~e~i~~~~~~l~~~~~~~  458 (459)
                      ++++++++++|++++++.
T Consensus       365 ~~~i~~~l~~l~~~~~~~  382 (391)
T 3h14_A          365 TADIEEGLDRLEAFMQAR  382 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999998763

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=100.00  E-value=1.8e-45  Score=368.04  Aligned_cols=361  Identities=13%  Similarity=0.070  Sum_probs=283.5

Q ss_pred             CCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcC
Q 012647           63 TMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGA  142 (459)
Q Consensus        63 ~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~  142 (459)
                      ...+++.+..+.+..   .++++|+|+.|.|    .+++ ++.+.+++.+.+.......|++..|.+++|+++++++...
T Consensus         6 ~~~~~~~~~~~~~~~---~~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~   77 (410)
T 3e2y_A            6 EGLDSNVWVEFTKLA---ADPSVVNLGQGFP----DISP-PSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKI   77 (410)
T ss_dssp             TTCCCCHHHHTTTTT---TSTTSEECSSCCC----CSCC-CHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHH
T ss_pred             ccCCccHHHHHHHHh---cCCCeEEecCCCC----CCCC-CHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHH
Confidence            334555555544332   2468999999997    4543 8999999999886543468988889999999999999877


Q ss_pred             CCCcccc-CceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeec---------CCCC
Q 012647          143 DNSVLKE-QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD---------PKTV  212 (459)
Q Consensus       143 ~~~~~~~-~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~---------~~~~  212 (459)
                      ++..+++ ++|++  |+|++++++++..  ..+.+||+|+++.|+|..|...++..|++++.+|++.         +.++
T Consensus        78 ~~~~~~~~~~i~~--~~g~~~a~~~~~~--~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~  153 (410)
T 3e2y_A           78 YQRQIDPNEEILV--AVGAYGSLFNSIQ--GLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDW  153 (410)
T ss_dssp             HTSCCCTTTSEEE--ESHHHHHHHHHHH--HHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGE
T ss_pred             hCCCCCCCCCEEE--eCCcHHHHHHHHH--HhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCC
Confidence            7777778 79999  9999999999843  3467999999999999999999999999999999862         2456


Q ss_pred             CCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc
Q 012647          213 GLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR  292 (459)
Q Consensus       213 ~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~  292 (459)
                      .+|++++++++++   +++++++++||||||.+++++++++|+++|++||+++|+||+|.++.+++.  ...++..+...
T Consensus       154 ~~d~~~l~~~~~~---~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~  228 (410)
T 3e2y_A          154 TFDPRELESKFSS---KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGH--THVKIATLPGM  228 (410)
T ss_dssp             ECCHHHHHTTCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSTTC
T ss_pred             cCCHHHHHhhcCC---CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCC--CCCCHHHcCCc
Confidence            7899999998864   788888899999999999999999999999999999999999999887542  12222222223


Q ss_pred             CCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChh-hHHHHHHHHHH
Q 012647          293 GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPA-LFDEWKAEMEM  371 (459)
Q Consensus       293 ~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~~~~  371 (459)
                      .++++++.||||.||++|+|+||+++   +++.++.+.    ........+++.++|.++...|.+.. ....|.+++++
T Consensus       229 ~~~~i~~~S~sK~~g~~G~r~G~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  301 (410)
T 3e2y_A          229 WERTITIGSAGKTFSVTGWKLGWSIG---PAHLIKHLQ----TVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNS  301 (410)
T ss_dssp             GGGEEEEEEHHHHSSCGGGCCEEEEC---CHHHHHHHH----HHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHH
T ss_pred             cCeEEEEecchhhcCCCCceEEEEEE---CHHHHHHHH----HHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHH
Confidence            46889999999999999999999865   777554443    33333344678888888877765300 00011234678


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCC----------------HHHHHHHHhcccEEEcCC----
Q 012647          372 MAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN----------------KAQSDNMTNKWHVYMTKD----  431 (459)
Q Consensus       372 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~----------------~~~~~~ll~~~gI~v~~g----  431 (459)
                      .+++++++++++.+.|+ ++|    +.+..+++|+|+|+++.                .+++.++++++||.+.||    
T Consensus       302 ~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~  376 (410)
T 3e2y_A          302 LPKELEVKRDRMVRLLN-SVG----LKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFC  376 (410)
T ss_dssp             HHHHHHHHHHHHHHHHH-TTT----CEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGS
T ss_pred             HHHHHHHHHHHHHHHHH-HCC----CeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhC
Confidence            89999999999999999 886    67788999999987542                166778888889999874    


Q ss_pred             ---------C--cEEEccCChhhHHHHHHHHHH
Q 012647          432 ---------G--RISLAGLSLAKCEYLADAIID  453 (459)
Q Consensus       432 ---------g--Ris~~~~~~e~i~~~~~~l~~  453 (459)
                               +  |||++. +++++++++++|++
T Consensus       377 ~~~~~~~~~~~iRis~~~-~~e~l~~~l~~l~~  408 (410)
T 3e2y_A          377 DSKSKPHFEKLVRFCFIK-KDSTLDAAEEIFRA  408 (410)
T ss_dssp             CTTTHHHHTTEEEEECCC-CHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCEEEEEEcC-CHHHHHHHHHHHHh
Confidence                     2  999988 99999999999875

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=100.00  E-value=2.2e-44  Score=358.61  Aligned_cols=339  Identities=14%  Similarity=0.142  Sum_probs=275.1

Q ss_pred             CCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCc-cccC-ceEEeec
Q 012647           80 DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSV-LKEQ-RVATVQG  157 (459)
Q Consensus        80 ~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~-~~~~-~i~~~~t  157 (459)
                      +.++++|+|+.|++    ..+ .++.+.+++.+.++.  ...|++..|.+++|+++++++...+|.. ++++ +|++  |
T Consensus        27 ~~g~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~--~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~--t   97 (396)
T 3jtx_A           27 PEGMEAVPLHIGEP----KHP-TPKVITDALTASLHE--LEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILP--V   97 (396)
T ss_dssp             CTTCCCEECSCCSC----CSC-CCHHHHHHHHHTGGG--GGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEE--E
T ss_pred             ccCCCeEEeCCcCC----CCC-CCHHHHHHHHHHhhh--ccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEE--c
Confidence            34578999999987    444 388999999988753  3789888999999999999998777776 6788 9999  9


Q ss_pred             ccchhHHHHHHHHHHHhCCC-----CEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEE
Q 012647          158 LSGTGSLRLAAALIERYFPG-----AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI  232 (459)
Q Consensus       158 ~ggt~a~~l~~~~~~~~~~g-----d~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~  232 (459)
                      +|++++++++.+  ..+.+|     |+|+++.|+|..+...++..|++++.+|+ +++++.+|++.+++++++   ++++
T Consensus        98 ~g~~~al~~~~~--~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~g~~~d~~~l~~~~~~---~~~~  171 (396)
T 3jtx_A           98 LGSREALFSFVQ--TVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANC-PAPSFNPDWRSISEEVWK---RTKL  171 (396)
T ss_dssp             SSHHHHHHHHHH--HHCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEEC-CTTTCCCCGGGSCHHHHH---TEEE
T ss_pred             CCcHHHHHHHHH--HHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeec-CCCCCccCHHHHHHhhcc---CcEE
Confidence            999999999843  346786     79999999999999999999999999999 456778999999999987   7888


Q ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH---HhcCCeEEEEEcCCcCcccC
Q 012647          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF---ATRGMELLVAQSYSKNLGLY  309 (459)
Q Consensus       233 ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~S~SK~~~~~  309 (459)
                      +++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. .........   ....++++++.||||.|+++
T Consensus       172 v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~  250 (396)
T 3jtx_A          172 VFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGN-KPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVP  250 (396)
T ss_dssp             EEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTC-CCCCHHHHHHHTTCCCTTEEEEEESTTTSSCG
T ss_pred             EEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCchHHhhhhhcccccCcEEEEeccccccCCc
Confidence            88899999999999999999999999999999999999999887641 111111111   11357899999999999999


Q ss_pred             CCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012647          310 AERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA  389 (459)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  389 (459)
                      |+|+||+++   +++..+.+...    ......+++.++|.++...|++.       +++++.+++++++++.+.+.|+ 
T Consensus       251 G~r~G~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~-  315 (396)
T 3jtx_A          251 GLRSGFVAG---DAELLKNFLLY----RTYHGSAMSIPVQRASIAAWDDE-------QHVIDNRRLYQEKFERVIPILQ-  315 (396)
T ss_dssp             GGCCEEEEE---CHHHHHHHHHH----HHHHTCCCCHHHHHHHHHHHHCC-------HHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             ccceEEEEe---CHHHHHHHHHH----HhhcccCCCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHH-
Confidence            999999866   88855555433    22333467888888887777653       3367889999999999999998 


Q ss_pred             ccCCCCCcccccCCcceeeecCCC----HHHHHHHHhcccEEEcCC--------------C--cEEEccCChhhHHHHHH
Q 012647          390 KDKSGKDWSFILRQIGMFSFTGLN----KAQSDNMTNKWHVYMTKD--------------G--RISLAGLSLAKCEYLAD  449 (459)
Q Consensus       390 ~~g~~~~~~~~~~~~g~f~~~~l~----~~~~~~ll~~~gI~v~~g--------------g--Ris~~~~~~e~i~~~~~  449 (459)
                      ++     +.+..+++|+|+|+.+.    .+++++|++++||.+.||              +  ||+++. ++++++++++
T Consensus       316 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~-~~~~i~~~l~  389 (396)
T 3jtx_A          316 QV-----FDVKLPDASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA-DVATCVKAAE  389 (396)
T ss_dssp             TT-----SCCCCCSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS-CHHHHHHHHH
T ss_pred             hc-----CCccCCCeeEEEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC-CHHHHHHHHH
Confidence            65     24567888999998664    456778878789999764              2  999988 9999999999


Q ss_pred             HHHHHH
Q 012647          450 AIIDSY  455 (459)
Q Consensus       450 ~l~~~~  455 (459)
                      +|++++
T Consensus       390 ~l~~~l  395 (396)
T 3jtx_A          390 DIVSLY  395 (396)
T ss_dssp             HHHHHC
T ss_pred             HHHHHh
Confidence            998875

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=100.00  E-value=2e-44  Score=357.98  Aligned_cols=360  Identities=16%  Similarity=0.159  Sum_probs=280.9

Q ss_pred             CCCccchhHHHhhh--CCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCC
Q 012647           66 PPDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGAD  143 (459)
Q Consensus        66 ~~~~i~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~  143 (459)
                      +++++.++...++.  ..++++|+|+.|.|    ..+ .++.+.+++.+.++... ..|++..|..++|+++++++...+
T Consensus        11 ~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~~~-~~y~~~~g~~~l~~~la~~~~~~~   84 (388)
T 1j32_A           11 SPSMTLIIDAKAKAMKAEGIDVCSFSAGEP----DFN-TPKHIVEAAKAALEQGK-TRYGPAAGEPRLREAIAQKLQRDN   84 (388)
T ss_dssp             CCCSSTTTHHHHHHHHTTTCCCEECCCSSC----SSC-CCHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhcCCCEEECCCCCC----CCC-CCHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHHHhc
Confidence            34445544443321  12467999999987    333 37889999988886543 679888899999999999997766


Q ss_pred             CCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHH
Q 012647          144 NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI  223 (459)
Q Consensus       144 ~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i  223 (459)
                      |..+++++|++  |+|++++++++.+.  .+.+||+|++++|+|..+...++..|++++.+|+++++++.+|++.+++++
T Consensus        85 g~~~~~~~v~~--~~g~~~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l  160 (388)
T 1j32_A           85 GLCYGADNILV--TNGGKQSIFNLMLA--MIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAI  160 (388)
T ss_dssp             CCCCCGGGEEE--ESHHHHHHHHHHHH--HCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHC
T ss_pred             CCCCChhhEEE--cCCHHHHHHHHHHH--hcCCCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhc
Confidence            76667889999  99999999998443  367999999999999999999999999999999864446789999999998


Q ss_pred             HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEEcC
Q 012647          224 KAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSY  302 (459)
Q Consensus       224 ~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~  302 (459)
                      ++   +++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++..  ..++..+.. ..++++++.|+
T Consensus       161 ~~---~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~  235 (388)
T 1j32_A          161 TP---KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQ--HLSIGAASPEAYERSVVCSGF  235 (388)
T ss_dssp             CT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC--CCCGGGSCHHHHHTEEEEEES
T ss_pred             Cc---CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCC--CCCHHHccccccCCEEEEeec
Confidence            75   6788888999999999999999999999999999999999999998875321  111111111 12468999999


Q ss_pred             CcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Q 012647          303 SKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQK  382 (459)
Q Consensus       303 SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (459)
                      ||.+|++|+|+||+++   +++..+.+..    .....+.+++.++|.++...|+..      .+++++.++++++++++
T Consensus       236 sK~~~~~G~r~G~~~~---~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~  302 (388)
T 1j32_A          236 AKTYAMTGWRVGFLAG---PVPLVKAATK----IQGHSTSNVCTFAQYGAIAAYENS------QDCVQEMLAAFAERRRY  302 (388)
T ss_dssp             TTTTTCTTTCCEEEEC---CHHHHHHHHH----HHHTTTCSCCHHHHHHHHHHHHSC------SHHHHHHHHHHHHHHHH
T ss_pred             hhccCCcccceEEEEe---CHHHHHHHHH----HHhhcccCCCHHHHHHHHHHHhCC------cHHHHHHHHHHHHHHHH
Confidence            9999999999999965   7775444433    333334467788888877777532      13367888999999999


Q ss_pred             HHHHHhhccCCCCCcccccCCcceeeecCC-----CH-HHHHHHHhcccEEEcCC------C--cEEEccCChhhHHHHH
Q 012647          383 LFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD------G--RISLAGLSLAKCEYLA  448 (459)
Q Consensus       383 l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g------g--Ris~~~~~~e~i~~~~  448 (459)
                      +.+.|+ +++   ++++..+++++|+|+.+     +. ++.+.|++++||.+.+|      +  |||++. +++++++++
T Consensus       303 l~~~L~-~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~-~~~~i~~~~  377 (388)
T 1j32_A          303 MLDALN-AMP---GLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYAT-DLDTIKRGM  377 (388)
T ss_dssp             HHHHHH-TCT---TCBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCS-CHHHHHHHH
T ss_pred             HHHHHh-hCC---CCcccCCCeeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEecC-CHHHHHHHH
Confidence            999999 772   26777888899888744     33 45667776679999886      2  999986 899999999


Q ss_pred             HHHHHHHhhc
Q 012647          449 DAIIDSYHNV  458 (459)
Q Consensus       449 ~~l~~~~~~~  458 (459)
                      ++|+++++++
T Consensus       378 ~~l~~~l~~~  387 (388)
T 1j32_A          378 ERLEKFLHGI  387 (388)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=100.00  E-value=1.5e-44  Score=365.61  Aligned_cols=362  Identities=13%  Similarity=0.161  Sum_probs=283.2

Q ss_pred             CCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCCCCCCcccHHHHHHHHHHHh
Q 012647           63 TMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLF  140 (459)
Q Consensus        63 ~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~aia~~l~  140 (459)
                      ...+++++.++.+...   .+++|+|+.|.| +...+|  ++.+.+++.+.++..  ...+|++..|.++||+++++++.
T Consensus        59 ~~~~~s~~~~~~~~~~---~~~~i~l~~g~p-~~~~~p--~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~  132 (448)
T 3aow_A           59 LEMRASEVRELLKLVE---TSDIISLAGGLP-NPKTFP--KEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLG  132 (448)
T ss_dssp             HHCCCCHHHHHHHHHH---TSSSEECCCCCC-CGGGSC--HHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHhcc---CCCcEeCCCCCC-CchhCC--HHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHH
Confidence            3345666766665443   367999999998 332322  688888888877542  12579888999999999999986


Q ss_pred             cCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHH
Q 012647          141 GADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMI  220 (459)
Q Consensus       141 ~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~  220 (459)
                      ..+|.+ ++++|++  |+|++++++++.+.  .+.+||+|++++|+|..+...++..|++++.+|+++ +  ++|++.|+
T Consensus       133 ~~~g~~-~~~~v~~--t~G~~~al~~~~~~--l~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~--g~d~~~L~  204 (448)
T 3aow_A          133 KRYGIS-QDNDIMI--TSGSQQALDLIGRV--FLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDD-E--GMKVEILE  204 (448)
T ss_dssp             HHHCCC-TTSEEEE--ESSHHHHHHHHHHH--HCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEET-T--EECHHHHH
T ss_pred             HhcCcC-ChhhEEE--eCcHHHHHHHHHHH--HcCCCCEEEEeCCChHHHHHHHHHcCCEEEEeccCC-C--CCCHHHHH
Confidence            555655 6889999  99999999998444  367999999999999999999999999999999963 2  59999999


Q ss_pred             HHHH----cCCCCcEEE-EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012647          221 ADIK----AAPGGSFIL-LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME  295 (459)
Q Consensus       221 ~~i~----~~~~~~~~i-i~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~  295 (459)
                      ++++    +. .+++++ ++++||||||.+++.+++++|+++|++||++||+||+|..+.+++.  ...++..+ +..++
T Consensus       205 ~~l~~~~~~~-~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~--~~~~~~~~-~~~~~  280 (448)
T 3aow_A          205 EKLKELKSQG-KKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGN--PEKKIKAL-DNEGR  280 (448)
T ss_dssp             HHHHHHHHTT-CCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSC--CCCCTGGG-CTTSC
T ss_pred             HHHhhhhccC-CCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCC--CCcCHHhc-CCCCC
Confidence            9997    42 256665 6899999999999999999999999999999999999999987532  11122121 33467


Q ss_pred             EEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012647          296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR  375 (459)
Q Consensus       296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~  375 (459)
                      ++++.||||.++ +|+|+||+++   ++++++.+...    ......+++.++|.++..+|++..    |.++++++++.
T Consensus       281 vi~~~S~SK~~~-~GlriG~v~~---~~~l~~~l~~~----~~~~~~~~~~~~q~a~~~~L~~~~----~~~~~~~~~~~  348 (448)
T 3aow_A          281 VIYLGTFSKILA-PGFRIGWMVG---DPGIIRKMEIA----KQSTDLCTNVFGQVVAWRYVDGGY----LEKHIPEIRKF  348 (448)
T ss_dssp             EEEEEESTTTTC-GGGCCEEEEE---CHHHHHHHHHH----HHHHHSSCCHHHHHHHHHHHHTTH----HHHHHHHHHHH
T ss_pred             EEEEccchhhcc-ccccEEEEEe---CHHHHHHHHHH----HHHhcCCCCHHHHHHHHHHHHhCC----HHHHHHHHHHH
Confidence            999999999999 9999999977   78855555432    222234668889998888887653    24567899999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC----CH-HHHHHHHhcccEEEcCC----------C--cEEEcc
Q 012647          376 IKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKD----------G--RISLAG  438 (459)
Q Consensus       376 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~g----------g--Ris~~~  438 (459)
                      ++++++++.+.|+ +. +|.++++..|.+|+|+|+.+    +. +++++|+++ ||.+.||          +  |||++.
T Consensus       349 ~~~~~~~l~~~L~-~~-~~~g~~~~~p~~g~~~~v~~~~~~~~~~l~~~l~~~-gV~v~pg~~f~~~~~~~~~iRls~~~  425 (448)
T 3aow_A          349 YKPRRDAMLEALE-EF-MPEGVKWTKPEGGMFIWVTLPDGIDSKKMLERAIKK-GVAYVPGEAFYAHRDVKNTMRLNFTY  425 (448)
T ss_dssp             HHHHHHHHHHHHH-HH-CCTTCEECCCSBSSEEEEECSTTCCHHHHHHHHHHT-TEECEEGGGGSTTCCCCSEEEEECSS
T ss_pred             HHHHHHHHHHHHH-Hh-CCCCeEEeCCCccEEEEEEcCCCCCHHHHHHHHHHC-CcEEEcchhhcCCCCCCCEEEEEeCC
Confidence            9999999999998 74 12226777888999999865    33 456777776 9999875          1  999987


Q ss_pred             CChhhHHHHHHHHHHHHhh
Q 012647          439 LSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       439 ~~~e~i~~~~~~l~~~~~~  457 (459)
                      .+++++++++++|.+++++
T Consensus       426 ~~~e~i~~~~~~L~~~l~~  444 (448)
T 3aow_A          426 VDEDKIMEGIKRLAETIKE  444 (448)
T ss_dssp             SCTHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence            6899999999999999875

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=100.00  E-value=8.4e-45  Score=363.74  Aligned_cols=344  Identities=12%  Similarity=0.120  Sum_probs=267.2

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCcccc-CceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~gg  160 (459)
                      ++++|||+.|.+    ..+ .++.+.+++.+.+.......|++..|..++|+++++++...+|..+++ ++|++  |+|+
T Consensus        36 g~~~idl~~g~~----~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~--t~g~  108 (412)
T 2x5d_A           36 GEDIIDLSMGNP----DGP-TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIV--TIGS  108 (412)
T ss_dssp             TCCCEECSSCCC----CSC-CCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEE--ESCH
T ss_pred             CCCEEecCCCCC----CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEE--cCCh
Confidence            467999999987    333 378999999888755323679888999999999999987655665667 69999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      +++++++.+.  .+.+||+|+++.|+|..+...++..|++++.+|++++.++.+|++.+++++++   +++++++++|||
T Consensus       109 ~~a~~~~~~~--~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~---~~~~v~l~~p~n  183 (412)
T 2x5d_A          109 KEGLAHLMLA--TLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIP---KPRMMILGFPSN  183 (412)
T ss_dssp             HHHHHHHHHH--HCCTTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEES---CCSEEEEESSCT
T ss_pred             HHHHHHHHHH--hCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhccc---CceEEEECCCCC
Confidence            9999998443  36799999999999999999999999999999986433455789999998874   566777799999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      |||.+++.+++++|+++|++||+++|+||+|..+.+++.  ...++..+....++++++.||||.+|++|+|+||+++  
T Consensus       184 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~--  259 (412)
T 2x5d_A          184 PTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGW--KAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVG--  259 (412)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEE--
T ss_pred             CCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCCChhhccCccCcEEEEecCccccCCcccceEEEEc--
Confidence            999999999999999999999999999999999886431  1112212211235789999999999999999999976  


Q ss_pred             CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012647          321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  400 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  400 (459)
                       +++.++.+....    .....+++.++|.++..+|++..      +++++.+++++++++++.+.|+ ++|    +.+.
T Consensus       260 -~~~~~~~l~~~~----~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~  323 (412)
T 2x5d_A          260 -NPELVSALARIK----SYHDYGTFTPLQVAAIAALEGDQ------QCVRDIARQYQQRRDVLVKGLR-EAG----WMVE  323 (412)
T ss_dssp             -CHHHHHHHHHHH----HHHCCCCCHHHHHHHHHHHHSCS------HHHHHHHHHHHHHHHHHHHHHH-HHT----CCCC
T ss_pred             -CHHHHHHHHHHH----hhhccCCCHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHH-HCC----CEec
Confidence             888655554322    22233677888888877776531      2367888999999999999999 776    5777


Q ss_pred             cCCcceeeecCC-------CH-HHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          401 LRQIGMFSFTGL-------NK-AQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       401 ~~~~g~f~~~~l-------~~-~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      .+++|+|+|+.+       +. ++++.|++++||.+.||        +  |||++. +++++++++++|.++++++
T Consensus       324 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~~  398 (412)
T 2x5d_A          324 NPKASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE-NRDRLRQAVRGIKAMFRAD  398 (412)
T ss_dssp             CCSBSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHT
T ss_pred             CCCeeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhc
Confidence            888899988754       23 45667777679999875        2  999998 8999999999999998764

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=100.00  E-value=1.2e-44  Score=360.85  Aligned_cols=339  Identities=17%  Similarity=0.210  Sum_probs=271.6

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC---CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE---NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~---~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      ++++|||+.|.|    ..++ ++.+.+++.+.+....   ...|++..|.+++|+++++++...+|..+++++|++  |+
T Consensus        34 ~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~--~~  106 (398)
T 3ele_A           34 KENVYDFSIGNP----SIPA-PQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYM--TM  106 (398)
T ss_dssp             GGGCEECCSCCC----CSCC-CHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEE--ES
T ss_pred             CCCeEEeecCCC----CCCC-CHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEE--cc
Confidence            357999999976    4343 7899999998886531   367988999999999999999877777778999999  99


Q ss_pred             cchhHHHHHHHHHHHhCCC-CEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCC
Q 012647          159 SGTGSLRLAAALIERYFPG-AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (459)
Q Consensus       159 ggt~a~~l~~~~~~~~~~g-d~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~  237 (459)
                      |++++++++.+  ..+.+| |+|++++|+|..|...++..|++++.+|++ ++++++|++++++++++   +++++++++
T Consensus       107 g~~~al~~~~~--~l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~---~~~~v~~~~  180 (398)
T 3ele_A          107 GAAASLSICFR--ALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPAD-TEHFQIDFDALEERINA---HTRGVIINS  180 (398)
T ss_dssp             SHHHHHHHHHH--HHCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECCC-TTTSSCCHHHHHHTCCT---TEEEEEECS
T ss_pred             CHHHHHHHHHH--HHcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecC-CcCCcCCHHHHHHHhCc---CCCEEEEcC
Confidence            99999999843  346799 999999999999999999999999999995 34789999999999875   788888999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHh------cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCC
Q 012647          238 AHNPTGIDPTPEQWEKIADVIQE------KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE  311 (459)
Q Consensus       238 p~NPTG~~~s~~~l~~i~~l~~~------~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~  311 (459)
                      ||||||.+++.+++++|+++|++      ||+++|+||+|.++.+++..  ..   ......+++++++||||.+|++|+
T Consensus       181 p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~--~~---~~~~~~~~~i~~~s~sK~~~~~G~  255 (398)
T 3ele_A          181 PNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIK--VP---FVTKYYDNTLVCYSYSKSLSLPGE  255 (398)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCC--CC---CGGGTCSSEEEEEESTTTSSCTTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCC--cC---ChHhhcCCeEEEEehhhcCCCccc
Confidence            99999999999999999999999      99999999999999875321  11   112345689999999999999999


Q ss_pred             CcceEEEEeCChhHHH--HHHHHHHhhcc-ccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012647          312 RIGAMNVVCSSSDLAA--RVKSQLKRLAR-PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  388 (459)
Q Consensus       312 RiG~~~~v~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  388 (459)
                      |+||+++   +++..+  .+...+..... ..+.+++.++|.++..++++..           .+++++++++++.+.|+
T Consensus       256 r~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----------~~~~~~~~~~~l~~~L~  321 (398)
T 3ele_A          256 RIGYVLV---PDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG-----------DINAYKENRDLLYEGLT  321 (398)
T ss_dssp             CCEEEEC---CTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC-----------CHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEE---cchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH-----------HHHHHHHHHHHHHHHHH
Confidence            9999955   554222  13333322221 2244677788888877776542           35677889999999999


Q ss_pred             hccCCCCCcccccCCcceeeecCC---CHHHHHHHHhcccEEEcCCC--------cEEEccCChhhHHHHHHHHHHHHhh
Q 012647          389 AKDKSGKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       389 ~~~g~~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                       ++|    +++..+++++|+|+.+   +.+.+.+.+.++||.+.||.        |||++. +++++++++++|.+++++
T Consensus       322 -~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~l~~  395 (398)
T 3ele_A          322 -RIG----YHCFKPDGAFYMFVKALEDDSNAFCEKAKEEDVLIVAADGFGCPGWVRISYCV-DREMIKHSMPAFEKIYKK  395 (398)
T ss_dssp             -HHT----CCEECCSBSSEEEEECSSSCHHHHHHHHHTTTEECEESGGGTCTTEEEEECCS-CHHHHHHHHHHHHHHHHH
T ss_pred             -HcC----CeecCCCeeEEEEEEcCCCCHHHHHHHHHHCCEEEeCccccCCCCeEEEEecC-CHHHHHHHHHHHHHHHHH
Confidence             886    5788889999999865   34444344456799999872        999985 999999999999999987


Q ss_pred             c
Q 012647          458 V  458 (459)
Q Consensus       458 ~  458 (459)
                      +
T Consensus       396 ~  396 (398)
T 3ele_A          396 Y  396 (398)
T ss_dssp             H
T ss_pred             h
Confidence            5

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.9e-43  Score=360.29  Aligned_cols=359  Identities=16%  Similarity=0.170  Sum_probs=272.1

Q ss_pred             CceeecccccCCCCCCcc---------------------CcHHHHHHHHHHhhcC---CCCCCCCCcccHHHHHHHHHHH
Q 012647           84 KKLNLGVGAYRTEELQPY---------------------VLDVVKKAENLMLERG---ENKEYLPIEGLAAFNKVTAELL  139 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~---------------------~~~~v~~a~~~~~~~~---~~~~Y~~~~g~~~lr~aia~~l  139 (459)
                      .+|++.+|.|... +..+                     .|..+.+++.+++...   ....|++..|.+++|+++++++
T Consensus        64 ~~i~~nig~p~~~-~~~~~~~~r~~l~l~~~p~~~~~~~~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~  142 (498)
T 3ihj_A           64 EVIRANIGDAQAM-GQQPITFLRQVMALCTYPNLLDSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYI  142 (498)
T ss_dssp             SCBCCC-----------CCHHHHHHHHHHHCGGGGGCSSSCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHH
T ss_pred             hhhhcCCcCcccc-cCCcchHHHHHHHHhcCccccCcccCCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHH
Confidence            7888999887221 2211                     1444555556666431   2368999999999999999999


Q ss_pred             hcCC-CCccccCceEEeecccchhHHHHHHHHHHHhCCCC----EEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCC
Q 012647          140 FGAD-NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA----KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGL  214 (459)
Q Consensus       140 ~~~~-~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd----~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~  214 (459)
                      ...+ |.++++++|++  |+|+++++.++..  ..+.+||    +|+++.|+|+.|...++..|++++.++++++++|++
T Consensus       143 ~~~~gG~~~~~~~i~~--t~G~~~ai~~~~~--~l~~~gd~~~d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~  218 (498)
T 3ihj_A          143 TRRDGGVPADPDNIYL--TTGASDGISTILK--ILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWAL  218 (498)
T ss_dssp             HHHTTTCCCCGGGEEE--ESSHHHHHHHHHH--HHCCCCGGGSEEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBC
T ss_pred             HHhcCCCCCCcccEEE--cCCHHHHHHHHHH--HHcCCCCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCC
Confidence            8777 47788999999  9999999999844  3356765    999999999999999999999999999987678999


Q ss_pred             CHHHHHHHHHcCCC--CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-
Q 012647          215 DFEGMIADIKAAPG--GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-  291 (459)
Q Consensus       215 d~e~l~~~i~~~~~--~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-  291 (459)
                      |+++|++++++...  ++++++++|||||||.+++.+++++|+++|++||++||+||+|+.+.+++. ....++..+.. 
T Consensus       219 d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~-~~~~s~~~~~~~  297 (498)
T 3ihj_A          219 NVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPD-CRFHSFKKVLYE  297 (498)
T ss_dssp             CHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTT-CCCCCHHHHHHH
T ss_pred             CHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCC-CCcCCHHHHHHH
Confidence            99999999986321  377888889999999999999999999999999999999999999988632 12233433322 


Q ss_pred             ------cCCeEEEEEcCCcCc-ccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCCh----h
Q 012647          292 ------RGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNP----A  360 (459)
Q Consensus       292 ------~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~----~  360 (459)
                            ...++++++||||.| |++|+|+||++++..++++.+.+....    . .+.+++.++|.++..+++++    .
T Consensus       298 ~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~----~-~~~~~~~~~q~a~~~~l~~~~~g~~  372 (498)
T 3ihj_A          298 MGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLL----S-VRLCPPVSGQAAMDIVVNPPVAGEE  372 (498)
T ss_dssp             TCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHH----H-HSCCCCHHHHHHHHHHTCCCCTTST
T ss_pred             hcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHH----h-ccCCCCHHHHHHHHHHhcCCccCcc
Confidence                  224589999999999 899999999964446888555554432    2 34577889999888888752    2


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC---------------CHHH--HHHHHhc
Q 012647          361 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---------------NKAQ--SDNMTNK  423 (459)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l---------------~~~~--~~~ll~~  423 (459)
                      ....|.+++++++++++++++++.+.|+ +++   ++++..+++|+|+|+.+               +.+.  +.+++++
T Consensus       373 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~-~~~---g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~  448 (498)
T 3ihj_A          373 SFEQFSREKESVLGNLAKKAKLTEDLFN-QVP---GIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEE  448 (498)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHH-TST---TEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC---CcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHH
Confidence            3445667778899999999999999999 872   27888999999999632               2322  5778887


Q ss_pred             ccEEEcCC-------C----cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          424 WHVYMTKD-------G----RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       424 ~gI~v~~g-------g----Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      +||.++||       |    ||+++. +++++++++++|.++++++
T Consensus       449 ~gI~v~pG~~f~~~~~~~~~Ris~~~-~~e~l~~~i~~L~~~~~~~  493 (498)
T 3ihj_A          449 TGICVVPGSGFGQREGTYHFRMTILP-PVEKLKTVLQKVKDFHINF  493 (498)
T ss_dssp             HCBCCEEGGGTCCCTTCCBEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcccCCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHHHH
Confidence            89999885       2    999974 8999999999999988753

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=100.00  E-value=2.5e-44  Score=359.40  Aligned_cols=344  Identities=16%  Similarity=0.148  Sum_probs=274.8

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCcccc-CceEEeecccchh
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGLSGTG  162 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~ggt~  162 (459)
                      .+|||+.|.|.   ..+ .++.|.+++.+.+.......|.+..|..++++++++++...+|..+++ ++|++  |+||++
T Consensus        40 ~~id~~~g~~~---~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~--~~g~~~  113 (407)
T 3nra_A           40 RPVDFSHGDVD---AHE-PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLII--TPGTQG  113 (407)
T ss_dssp             CCEETTSCCTT---TSC-CCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEE--ESHHHH
T ss_pred             ceeeecCcCCC---CCC-CcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE--eCCcHH
Confidence            47999999871   233 378999999988865333578888999999999999987777776666 79999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeec----CCCCCCCHHHHHHHHHcCCCCcEEEEeCCC
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD----PKTVGLDFEGMIADIKAAPGGSFILLHGCA  238 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~----~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p  238 (459)
                      +++++.  ...+.+||+|+++.|+|..+...++..|++++.+|++.    ++++.+|++.+++++++   +++++++++|
T Consensus       114 a~~~~~--~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~---~~~~v~~~~p  188 (407)
T 3nra_A          114 ALFLAV--AATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA---GARVFLFSNP  188 (407)
T ss_dssp             HHHHHH--HTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT---TCCEEEEESS
T ss_pred             HHHHHH--HHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh---CCcEEEEcCC
Confidence            999983  33367999999999999999999999999999999832    35788999999999986   5677788999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH-hcCCeEEEEEcCCcCcccCCCCcceEE
Q 012647          239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRGMELLVAQSYSKNLGLYAERIGAMN  317 (459)
Q Consensus       239 ~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (459)
                      |||||.+++.+++++|+++|++||+++|+||+|..+.+++.  ....+..+. ...++++++.||||.+|++|+|+||++
T Consensus       189 ~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~  266 (407)
T 3nra_A          189 NNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGA--SYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAF  266 (407)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTC--CCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEE
T ss_pred             CCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEE
Confidence            99999999999999999999999999999999999887642  122222221 234578999999999999999999997


Q ss_pred             EEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Q 012647          318 VVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDW  397 (459)
Q Consensus       318 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~  397 (459)
                      +   +++.++.+...    ......+++.++|.++..+|++..      +.+++.+++++++++++.+.|+ +++   ++
T Consensus       267 ~---~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~-~~~---~~  329 (407)
T 3nra_A          267 G---SRAIIARMEKL----QAIVSLRAAGYSQAVLRGWFDEAP------GWMEDRIARHQAIRDELLHVLR-GCE---GV  329 (407)
T ss_dssp             E---CHHHHHHHHHH----HHHHTSSSCHHHHGGGGGTTCCCT------THHHHHHHHHHHHHHHHHHHHH-TST---TC
T ss_pred             c---CHHHHHHHHHH----HhhhccCCChHHHHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHh-cCC---Cc
Confidence            6   78855554433    223344667778877777776531      2256778888999999999999 872   26


Q ss_pred             ccccCCcceeeecCC-----CH-HHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          398 SFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       398 ~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      .+..+++++|+|+.+     +. ++.+.|++++||.+.+|.          ||+++. +++++++++++|.++++++
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~~~~~~  405 (407)
T 3nra_A          330 FARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ-DHEAAVAAARRIVTLVERY  405 (407)
T ss_dssp             BCCCCSBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred             eeccCCeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHHHh
Confidence            777888889999855     23 556777777799998752          999998 9999999999999998865

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=100.00  E-value=2.6e-44  Score=359.27  Aligned_cols=342  Identities=16%  Similarity=0.111  Sum_probs=272.4

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCcccc-CceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~gg  160 (459)
                      +.++|||+.|.+    ..+ .++.+.+++.+.+.......|++..|.+++|+++++++...+|..+++ ++|++  |+|+
T Consensus        46 g~~~idl~~g~~----~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~--t~G~  118 (404)
T 2o1b_A           46 PLPLINMAVGIP----DGP-TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCI--LYGT  118 (404)
T ss_dssp             SSCCEECCCCSC----SSC-CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEE--ESSH
T ss_pred             CCCEEecCCcCC----CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEE--cCCc
Confidence            456899999997    333 378899999888754223578777899999999999986655666666 78999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      +++++++.+.  .+.+||+|++++|+|..+...++..|++++.+|+++ +++.+|++++++++++   +++++++++|||
T Consensus       119 ~~al~~~~~~--l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~---~~~~v~l~~p~n  192 (404)
T 2o1b_A          119 KNGLVAVPTC--VINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEP-PHYLPDWSKVDSQIID---KTKLIYLTYPNN  192 (404)
T ss_dssp             HHHHHHHHHH--HCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEECCT-TTCCCCGGGSCHHHHH---HEEEEEECSSCT
T ss_pred             HHHHHHHHHH--hcCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCc-ccCcCCHHHHHHhhcc---CceEEEEcCCCC
Confidence            9999998443  367999999999999999999999999999999853 4667899999999975   678888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      |||.+++.+++++|+++|++||+++|+||+|.++.+++...+..   .+....++++++.||||.||++|+|+||+++  
T Consensus       193 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~---~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~--  267 (404)
T 2o1b_A          193 PTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSIL---ASENGKDVAIEIYSLSKGYNMSGFRVGFAVG--  267 (404)
T ss_dssp             TTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGG---GSTTHHHHEEEEEESTTTTTCGGGCCEEEEE--
T ss_pred             CCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChh---hcCCCCCCEEEEEecchhccCchhheEeEec--
Confidence            99999999999999999999999999999999987643111111   1111124789999999999999999999866  


Q ss_pred             CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012647          321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  400 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  400 (459)
                       ++++++.+....    .....+++.++|.++..+|++.      .+.+++.+++++++++++.+.|+ ++|    +++.
T Consensus       268 -~~~~~~~l~~~~----~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~  331 (404)
T 2o1b_A          268 -NKDMIQALKKYQ----THTNAGMFGALQDAAIYALNHY------DDFLEEQSNVFKTRRDRFEAMLA-KAD----LPFV  331 (404)
T ss_dssp             -CHHHHHHHHHHH----HHHCCCCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HTT----CCEE
T ss_pred             -CHHHHHHHHHHH----hhccCCCCHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHHHHHHHHH-hcC----Ceec
Confidence             888555554332    2223467788888887777542      23467889999999999999999 876    5777


Q ss_pred             cCCcceeeecCC----C-HHHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          401 LRQIGMFSFTGL----N-KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       401 ~~~~g~f~~~~l----~-~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      .+++|+|+|+.+    + .+++++|++++||.+.||        +  ||+++. +++++++++++|.+++++.
T Consensus       332 ~~~~g~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~e~l~~~l~~l~~~l~~~  403 (404)
T 2o1b_A          332 HAKGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL-DDQKLDEAAIRLTELAYLY  403 (404)
T ss_dssp             CCCBSSEEEEECCTTCCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS-CTTHHHHHHHHHHGGGGGG
T ss_pred             CCCcceEEEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC-CHHHHHHHHHHHHHHHHhh
Confidence            788899888754    2 355778786679999875        2  999998 8899999999999988763

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=1e-43  Score=353.19  Aligned_cols=357  Identities=17%  Similarity=0.165  Sum_probs=283.3

Q ss_pred             CCCCCCccchhHHHhhhC--CCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHh
Q 012647           63 TMAPPDPILGVSEAFKAD--TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLF  140 (459)
Q Consensus        63 ~~~~~~~i~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~  140 (459)
                      ...+++++.++...++..  .++++|+|+.|.+    ..++ ++.+.+++.+.+.... ..|++..|..++|+++++++.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~-~~y~~~~g~~~lr~~la~~~~   92 (389)
T 1o4s_A           19 SEIPISKTMELDAKAKALIKKGEDVINLTAGEP----DFPT-PEPVVEEAVRFLQKGE-VKYTDPRGIYELREGIAKRIG   92 (389)
T ss_dssp             HHSCCCSSHHHHHHHHHHHHTTCCCEECCCSSC----SSCC-CHHHHHHHHHHHTTCC-CCCCCTTCCHHHHHHHHHHHH
T ss_pred             hhcCccHHHHHHHHHHHHHhcCCCEEEccCCCC----CCCC-CHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHH
Confidence            334566666666544321  2468999999987    3333 7889999998886543 578888899999999999987


Q ss_pred             cCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHH
Q 012647          141 GADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMI  220 (459)
Q Consensus       141 ~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~  220 (459)
                      ..+|..+++++|++  |+|++++++++.+.  .+.+||+|++++|+|..+...++..|++++.+|+++++++.+|++.++
T Consensus        93 ~~~g~~~~~~~v~~--~~g~t~al~~~~~~--l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~  168 (389)
T 1o4s_A           93 ERYKKDISPDQVVV--TNGAKQALFNAFMA--LLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVE  168 (389)
T ss_dssp             HHHTCCCCGGGEEE--ESHHHHHHHHHHHH--HCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHH
T ss_pred             HHhCCCCCHHHEEE--ecCHHHHHHHHHHH--hCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHH
Confidence            66666667889999  99999999998443  367999999999999999999999999999999864346789999999


Q ss_pred             HHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEE
Q 012647          221 ADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (459)
Q Consensus       221 ~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  300 (459)
                      +++++   +++++++++||||||.+++.+++++|+++|++||+++|+||+|..+.+++   ...++..+....+++++++
T Consensus       169 ~~l~~---~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g---~~~~~~~~~~~~~~~i~~~  242 (389)
T 1o4s_A          169 GLLVG---KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTD---EFTSILDVSEGFDRIVYIN  242 (389)
T ss_dssp             HTCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSS---CCCCHHHHCSSSTTEEEEE
T ss_pred             Hhccc---CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCC---CCCCHhhcCCCCCcEEEEe
Confidence            98875   67888889999999999999999999999999999999999999988653   1123323311246799999


Q ss_pred             cCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012647          301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR  380 (459)
Q Consensus       301 S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~  380 (459)
                      ||||.+|++|+|+||+++   +++..+.+...    ....+.+++.++|.++..+|++.         +++.++++++++
T Consensus       243 s~sK~~~~~G~r~G~l~~---~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~l~~~---------~~~~~~~~~~~~  306 (389)
T 1o4s_A          243 GFSKSHSMTGWRVGYLIS---SEKVATAVSKI----QSHTTSCINTVAQYAALKALEVD---------NSYMVQTFKERK  306 (389)
T ss_dssp             ESTTTTTCGGGCCEEEEC---CHHHHHHHHHH----HHHHTCSCCHHHHHHHHHHTTCC---------CHHHHHHHHHHH
T ss_pred             echhhcCCcccceEEEEe---CHHHHHHHHHH----hhhcccCCCHHHHHHHHHHHhcc---------HHHHHHHHHHHH
Confidence            999999999999999965   77755544432    22223466778888888888764         257788899999


Q ss_pred             HHHHHHHhhccCCCCCcccccCCcceeeecCC--CH-HHHHHHHhcccEEEcCC------C--cEEEccCChhhHHHHHH
Q 012647          381 QKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--NK-AQSDNMTNKWHVYMTKD------G--RISLAGLSLAKCEYLAD  449 (459)
Q Consensus       381 ~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l--~~-~~~~~ll~~~gI~v~~g------g--Ris~~~~~~e~i~~~~~  449 (459)
                      +++.+.|+ ++|    +++..+++|+|+|+.+  +. ++.++|++++||.+.||      +  |||++. ++++++++++
T Consensus       307 ~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~-~~~~l~~~l~  380 (389)
T 1o4s_A          307 NFVVERLK-KMG----VKFVEPEGAFYLFFKVRGDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFAT-SIERLTEALD  380 (389)
T ss_dssp             HHHHHHHH-HTT----CCCCCCSBSSEEEEECSSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS-CHHHHHHHHH
T ss_pred             HHHHHHHH-hcC----CeeecCCcceEEEEeCCCCHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeC-CHHHHHHHHH
Confidence            99999999 876    5677788899988765  34 45677775679999876      2  999997 9999999999


Q ss_pred             HHHHHHhh
Q 012647          450 AIIDSYHN  457 (459)
Q Consensus       450 ~l~~~~~~  457 (459)
                      +|.+++++
T Consensus       381 ~l~~~l~~  388 (389)
T 1o4s_A          381 RIEDFLNS  388 (389)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHhc
Confidence            99998864

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=100.00  E-value=2.6e-43  Score=356.86  Aligned_cols=342  Identities=15%  Similarity=0.143  Sum_probs=271.1

Q ss_pred             CCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhc----CCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012647           80 DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER----GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (459)
Q Consensus        80 ~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~----~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (459)
                      ..++++|+|+.|.+    +.+. +|.|.+++.+.+..    .....|++..|.++||+++++++.  +|..+++++|++ 
T Consensus        66 ~~~~~~i~l~~g~~----~~~~-~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~~i~~-  137 (449)
T 3qgu_A           66 NPDAKIISLGIGDT----TEPL-PKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGRAADEIFI-  137 (449)
T ss_dssp             CTTCCCEECSSCCC----CCCC-CHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGGGEEE-
T ss_pred             CCCCCEEEeeCCCC----CCCC-CHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHHHEEE-
Confidence            34568999999976    4443 88999999888762    233689888999999999999986  677777899999 


Q ss_pred             ecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCC----------eeeeeeecCCCCCCCHHHHHHHHHc
Q 012647          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVP----------WSEYRYYDPKTVGLDFEGMIADIKA  225 (459)
Q Consensus       156 ~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~----------v~~v~~~~~~~~~~d~e~l~~~i~~  225 (459)
                       |+|+++++.++   ...+.+||+|++++|+|.+|...++..|++          ++.+|+++++++..|++.+      
T Consensus       138 -t~G~~~al~~~---~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  207 (449)
T 3qgu_A          138 -SDGSKCDIARI---QMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA------  207 (449)
T ss_dssp             -ESCHHHHHHHH---HHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC------
T ss_pred             -ccCHHHHHHHH---HHHhCCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHc------
Confidence             99999999987   334789999999999999999999999998          9999986554566665442      


Q ss_pred             CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC
Q 012647          226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (459)
Q Consensus       226 ~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (459)
                        ++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+....++++++.||||.
T Consensus       208 --~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~  283 (449)
T 3qgu_A          208 --KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPD--CPKTIYEIPGADEVAIETCSFSKY  283 (449)
T ss_dssp             --CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTT--SCSSGGGSTTGGGTEEEEEECSGG
T ss_pred             --CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCC--CCCCHhhccCCCCcEEEEecchhh
Confidence              2566777789999999999999999999999999999999999999987631  122222222224578999999999


Q ss_pred             cccCCCCcceEEEEeCChhHHHH----HHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 012647          306 LGLYAERIGAMNVVCSSSDLAAR----VKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQ  381 (459)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~  381 (459)
                      ||++|+|+||+++   +++.++.    +...+.......+.+++.++|.++..+|.+..     .+++++++++++++++
T Consensus       284 ~g~~G~r~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~~~  355 (449)
T 3qgu_A          284 AGFTGVRLGWTVV---PKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEG-----LKEMNAMIKFYKENAQ  355 (449)
T ss_dssp             GTCTTCCCEEEEC---CTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHH-----HHHHHHHHHHHHHHHH
T ss_pred             cCCccceeEEEec---CHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcC-----HHHHHHHHHHHHHHHH
Confidence            9999999999965   6664331    11122222334455788889998888887532     2447888999999999


Q ss_pred             HHHHHHhhccCCCCCcccccCCcceeeecCC---C-HHHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHH
Q 012647          382 KLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---N-KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYL  447 (459)
Q Consensus       382 ~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l---~-~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~  447 (459)
                      ++.+.|+ ++|    +++..+++++|+|+.+   + .+++++|++++||.+.||        +  |||++. ++++++++
T Consensus       356 ~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~-~~e~i~~~  429 (449)
T 3qgu_A          356 ILKTTFT-EMG----FSVYGGDDAPYIWVGFPGKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFG-SRENILEA  429 (449)
T ss_dssp             HHHHHHH-HTT----CCEEESSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHH
T ss_pred             HHHHHHH-HCC----CeeeCCCCeeEEEEECCCCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecC-CHHHHHHH
Confidence            9999999 887    6788888899999865   2 456778888789999886        2  999877 99999999


Q ss_pred             HHHHHHHHhh
Q 012647          448 ADAIIDSYHN  457 (459)
Q Consensus       448 ~~~l~~~~~~  457 (459)
                      +++|++++++
T Consensus       430 l~~l~~~~~~  439 (449)
T 3qgu_A          430 VRRFKEAYGK  439 (449)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=100.00  E-value=3.5e-43  Score=353.95  Aligned_cols=360  Identities=17%  Similarity=0.224  Sum_probs=277.7

Q ss_pred             CCceeecccccCCCCCCccCcHHH--HHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCc---eEEeec
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVV--KKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQR---VATVQG  157 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v--~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~---i~~~~t  157 (459)
                      +++|||+.|.|. ..+.   ++.+  .+++.+.+.......|++..|.+++|+++++++...+ ..+++++   |++  |
T Consensus        47 ~~~i~l~~g~~~-~~~~---~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~~~~i~~--t  119 (430)
T 2x5f_A           47 STTYNATIGMAT-NKDG---KMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDN-PELSIDNMSRPIV--T  119 (430)
T ss_dssp             TCSEECCCSSCE-ETTE---ECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHC-TTCCGGGBCCCEE--E
T ss_pred             CCcEEeeeeecc-CCCC---chhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccC-cccCCCccceEEE--c
Confidence            578999999872 1121   4444  5555554433123689888899999999999986553 5556788   999  9


Q ss_pred             ccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhh-CCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeC
Q 012647          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG  236 (459)
Q Consensus       158 ~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~  236 (459)
                      +|++++++++.+  ..+.+||+|++++|+|..+...++. .|++++.+|++++ ++++|++++++++++.+.++++++++
T Consensus       120 ~g~~~al~~~~~--~l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~~~~v~i~  196 (430)
T 2x5f_A          120 NALTHGLSLVGD--LFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDK-DGHYTTDSLVEALQSYNKDKVIMILN  196 (430)
T ss_dssp             SHHHHHHHHHHH--HHCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCT-TSCBCSHHHHHHHHHCCSSEEEEEEC
T ss_pred             CCchHHHHHHHH--HHhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCc-cCCcCHHHHHHHHHhcCCCCEEEEEc
Confidence            999999999844  3367999999999999999999999 9999999998643 37899999999998644467888889


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHh-----cCCeeEEeccCCCCCCCCCCCChhHHH-HHHhcCCe---EEEEEcCCcCcc
Q 012647          237 CAHNPTGIDPTPEQWEKIADVIQE-----KNHIPFFDVAYQGFASGSLDNDASSVR-LFATRGME---LLVAQSYSKNLG  307 (459)
Q Consensus       237 ~p~NPTG~~~s~~~l~~i~~l~~~-----~~~~ii~Deay~~~~~~~~~~~~~~~~-~~~~~~~~---~i~~~S~SK~~~  307 (459)
                      +||||||.+++.+++++|+++|++     ||+++|+||+|.++.+++.  ...++. .+....++   +++++||||.||
T Consensus       197 ~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~  274 (430)
T 2x5f_A          197 YPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDV--YTQSLFTALTNLHSNAILPIRLDGATKEFF  274 (430)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSS--CCSCHHHHHHTTCCTTEEEEEEEEHHHHTT
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcc--cchHHHHHHhhccCCcceEEEEEecccCCC
Confidence            999999999999999999999999     9999999999999987531  122332 33222567   899999999999


Q ss_pred             cCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          308 LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVG-NPALFDEWKAEMEMMAGRIKNVRQKLFDS  386 (459)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  386 (459)
                      ++|+|+||+++++.+++..+.+........+..+.+++.++|.++..+|+ +.+    |.+++++.+++++++++++.+.
T Consensus       275 ~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~~~~~l~~~  350 (430)
T 2x5f_A          275 AWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQ----FDKEIEQNIQTLKERYEVTKEV  350 (430)
T ss_dssp             CGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999844334777666555433221222455788899999988887 753    3566778999999999999999


Q ss_pred             HhhccCCCCCcccccCCcceeeecCC---CH-HHHHHHHhcccEEEcCCC----cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          387 LSAKDKSGKDWSFILRQIGMFSFTGL---NK-AQSDNMTNKWHVYMTKDG----RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       387 L~~~~g~~~~~~~~~~~~g~f~~~~l---~~-~~~~~ll~~~gI~v~~gg----Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      |+ +...+.++.+..+++|+|+|+.+   +. ++.++|++++||.+.||+    |||++..+++++++++++|+++++++
T Consensus       351 L~-~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~  429 (430)
T 2x5f_A          351 VY-ADQYHSHWQAYDFNSGYFMAIKVHDVDPEALRKHLIDKYSIGVIALNATDIRIAFSCVEKDDIPHVFDSIAKAIDDL  429 (430)
T ss_dssp             HT-CGGGTTTEEECCCCBSSEEEEEESSSCHHHHHHHHHHHHCEECEECSSSEEEEEGGGSCGGGHHHHHHHHHHHHHHH
T ss_pred             HH-hhCCCCCceeeCCCceEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCeEEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence            98 53101126777888999988754   34 456777775799999974    99999448999999999999999876


Q ss_pred             C
Q 012647          459 S  459 (459)
Q Consensus       459 ~  459 (459)
                      +
T Consensus       430 ~  430 (430)
T 2x5f_A          430 R  430 (430)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=100.00  E-value=2.8e-43  Score=354.54  Aligned_cols=344  Identities=14%  Similarity=0.048  Sum_probs=271.8

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCCCCCCcccHHHHHHHHHHHhcCCCCccccC-ceEEeeccc
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLS  159 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~g  159 (459)
                      +++|+|+.|.+    ..+ .++.+.+++.+.+...  ....|++..|..++|+++++++...+|..++++ +|++  |+|
T Consensus        37 ~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~--~~g  109 (429)
T 1yiz_A           37 YKPLNLGQGFP----DYH-APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLV--TVG  109 (429)
T ss_dssp             HCCEECCSSSC----SSC-CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEE--ESH
T ss_pred             CCEEEecCCCC----CCC-CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEE--ecC
Confidence            47899999987    333 3789999999888541  136788888999999999999866556556688 9999  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCC--------CCCCCHHHHHHHHHcCCCCcE
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK--------TVGLDFEGMIADIKAAPGGSF  231 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~--------~~~~d~e~l~~~i~~~~~~~~  231 (459)
                      ++++++++.+.  .+.+||+|+++.|+|..+...++..|++++.+|+++++        ++.+|++.+++++++   +++
T Consensus       110 ~~~a~~~~~~~--~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~---~~~  184 (429)
T 1yiz_A          110 AYEALYATIQG--HVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNE---KTK  184 (429)
T ss_dssp             HHHHHHHHHHH--HCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCT---TEE
T ss_pred             hHHHHHHHHHH--hcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhcc---Cce
Confidence            99999998443  36799999999999999999999999999999986432        568999999999864   678


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCC
Q 012647          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE  311 (459)
Q Consensus       232 ~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~  311 (459)
                      ++++++||||||.+++++++++|+++|++||+++|+||+|.++.+++.  ...++..+....++++++.||||.+|++|+
T Consensus       185 ~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~  262 (429)
T 1yiz_A          185 MIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPF--EHIRICTLPGMWERTITIGSAGKTFSLTGW  262 (429)
T ss_dssp             EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTS--CCCCGGGSTTTGGGEEEEEEHHHHHTCGGG
T ss_pred             EEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCC--CCcChhhccCCcCceEEEecchhccCCCCc
Confidence            888899999999999999999999999999999999999999887531  111221111134579999999999999999


Q ss_pred             CcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCC-----hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          312 RIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN-----PALFDEWKAEMEMMAGRIKNVRQKLFDS  386 (459)
Q Consensus       312 RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~  386 (459)
                      |+||+++   +++.++.+...    ......+++.++|.++..+|++     ..+    .+++++.+++++++++++.+.
T Consensus       263 r~G~~~~---~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~  331 (429)
T 1yiz_A          263 KIGWAYG---PEALLKNLQMV----HQNCVYTCATPIQEAIAVGFETELKRLKSP----ECYFNSISGELMAKRDYMASF  331 (429)
T ss_dssp             CCEEEES---CHHHHHHHHHH----HHTTTCCCCHHHHHHHHHHHHHHHTTTTST----TSHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEe---CHHHHHHHHHH----HhhcccCCChHHHHHHHHHHhcccccccch----HHHHHHHHHHHHHHHHHHHHH
Confidence            9999865   77755544332    2223346777788777777754     211    234678899999999999999


Q ss_pred             HhhccCCCCCcccccCCcceeeecCCC-----------------HHHHHHHHhcccEEEcCC-------------C--cE
Q 012647          387 LSAKDKSGKDWSFILRQIGMFSFTGLN-----------------KAQSDNMTNKWHVYMTKD-------------G--RI  434 (459)
Q Consensus       387 L~~~~g~~~~~~~~~~~~g~f~~~~l~-----------------~~~~~~ll~~~gI~v~~g-------------g--Ri  434 (459)
                      |+ ++|    +.+..+++|+|+|+.+.                 .+++++|++++||.+.||             +  ||
T Consensus       332 L~-~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRi  406 (429)
T 1yiz_A          332 LA-EVG----MNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRY  406 (429)
T ss_dssp             HH-HHT----CEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEE
T ss_pred             HH-hCC----CcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEE
Confidence            99 876    57777888999887542                 244667776679999874             2  99


Q ss_pred             EEccCChhhHHHHHHHHHHHHhh
Q 012647          435 SLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       435 s~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                      +++. +++++++++++|.+++++
T Consensus       407 s~~~-~~e~i~~~l~~l~~~l~~  428 (429)
T 1yiz_A          407 CFFK-KDENLQKAAEILRKWKGS  428 (429)
T ss_dssp             ECCS-CHHHHHHHHHHHHHHSCC
T ss_pred             EecC-CHHHHHHHHHHHHHhccC
Confidence            9987 999999999999998764

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.7e-43  Score=354.15  Aligned_cols=341  Identities=15%  Similarity=0.100  Sum_probs=268.3

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccC-ceEEeecccch
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT  161 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt  161 (459)
                      ++.|+|+.|.+    ..+ .++.+.+++.+.++.. ...|.+..|..++|+++++++...+|..++++ +|++  |+|++
T Consensus        25 ~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~--t~g~~   96 (411)
T 2o0r_A           25 IGAVNLGQGFP----DED-GPPKMLQAAQDAIAGG-VNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLV--TVGAT   96 (411)
T ss_dssp             TTCEESSCSSC----SSC-CCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEE--EEHHH
T ss_pred             CCeeeccCcCC----CCC-CCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEE--eCCHH
Confidence            46899999987    333 3788999999988654 36898888999999999999876666666677 9999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecC-CCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP-KTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~-~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      +++.++.+.  .+.+||+|++++|+|..+...++..|++++.+|++++ .++.+|++.+++++++   +++++++++|+|
T Consensus        97 ~al~~~~~~--~~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~---~~~~v~l~~~~n  171 (411)
T 2o0r_A           97 EAIAAAVLG--LVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTP---RTRALIINSPHN  171 (411)
T ss_dssp             HHHHHHHHH--HCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCT---TEEEEEEESSCT
T ss_pred             HHHHHHHHH--hcCCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhcc---CceEEEEeCCCC
Confidence            999998433  3679999999999999999999999999999998643 2467999999999875   678888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      |||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+....++++++.||||.+|++|+|+||+++  
T Consensus       172 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~--  247 (411)
T 2o0r_A          172 PTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHA--RHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACG--  247 (411)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEEC--
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCcChhhccCCCCCEEEEeechhhcCCccceEEEEee--
Confidence            999999999999999999999999999999999886531  1112212111235799999999999999999999965  


Q ss_pred             CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012647          321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  400 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  400 (459)
                       ++++++.+.....    ....+.+.++|.++...|+..      .+.+++.+++++++++++.+.|+ ++|    +.+.
T Consensus       248 -~~~~~~~l~~~~~----~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~  311 (411)
T 2o0r_A          248 -PAELIAGVRAAKQ----YLSYVGGAPFQPAVALALDTE------DAWVAALRNSLRARRDRLAAGLT-EIG----FAVH  311 (411)
T ss_dssp             -CHHHHHHHHHHHH----HHTSCCCTTHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HHT----CEEC
T ss_pred             -CHHHHHHHHHHHh----hccCCCChHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHHHHHHH-HcC----CEec
Confidence             7775555443322    112244556677776666432      23467889999999999999999 776    5777


Q ss_pred             cCCcceeeecCC------CH-HHHHHHHhcccEEEcCC-----------------C----cEEEccCChhhHHHHHHHHH
Q 012647          401 LRQIGMFSFTGL------NK-AQSDNMTNKWHVYMTKD-----------------G----RISLAGLSLAKCEYLADAII  452 (459)
Q Consensus       401 ~~~~g~f~~~~l------~~-~~~~~ll~~~gI~v~~g-----------------g----Ris~~~~~~e~i~~~~~~l~  452 (459)
                      .+++|+|+|+.+      +. ++.++|++++||.+.+|                 +    |||++. +++++++++++|+
T Consensus       312 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~-~~e~i~~~~~~l~  390 (411)
T 2o0r_A          312 DSYGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCK-RDDTLDEAIRRLS  390 (411)
T ss_dssp             CCCBSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCS-CHHHHHHHHHHHG
T ss_pred             CCCeeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecC-CHHHHHHHHHHHH
Confidence            788898888754      23 45667776679998652                 2    999987 8999999999999


Q ss_pred             HHHhh
Q 012647          453 DSYHN  457 (459)
Q Consensus       453 ~~~~~  457 (459)
                      +++++
T Consensus       391 ~~~~~  395 (411)
T 2o0r_A          391 VLAER  395 (411)
T ss_dssp             GGGC-
T ss_pred             HHHhc
Confidence            87754

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=100.00  E-value=7.6e-43  Score=346.41  Aligned_cols=336  Identities=12%  Similarity=0.114  Sum_probs=266.7

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccC-ceEEeecccch
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT  161 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt  161 (459)
                      +++|+|+.|.+    ..+ .++.+.+++.+.+... ...|++..|..++|+++++++...+|..++++ +|++  |+|++
T Consensus        30 ~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~--~~g~~  101 (386)
T 1u08_A           30 HQAINLSQGFP----DFD-GPRYLQERLAHHVAQG-ANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITV--TAGAT  101 (386)
T ss_dssp             TTCEECCCSSC----SSC-CCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEE--ESSHH
T ss_pred             CCeEEecCCCC----CCC-CCHHHHHHHHHHHHhh-ccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEE--cCChH
Confidence            47899999987    333 3789999999888653 36898888999999999999866556666688 9999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      ++++++.+.  .+.+||+|++++|+|..+...++..|++++.+|+++ +++.+|++++++++++   +++++++++||||
T Consensus       102 ~a~~~~~~~--~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~---~~~~v~l~~p~np  175 (386)
T 1u08_A          102 EALYAAITA--LVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQP-PHFRVDWQEFAALLSE---RTRLVILNTPHNP  175 (386)
T ss_dssp             HHHHHHHHH--HCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCT-TTCCCCHHHHHHHCCT---TEEEEEEESSCTT
T ss_pred             HHHHHHHHH--hCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeecCc-ccCcCCHHHHHHhhcc---cCEEEEEeCCCCC
Confidence            999998443  367999999999999999999999999999999853 3578999999999864   6788888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+++.+++++|+++|++||+++|+||+|.++.+++..  ..++..+....++++++.||||.+|++|+|+||+++   
T Consensus       176 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~---  250 (386)
T 1u08_A          176 SATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQG--HASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVA---  250 (386)
T ss_dssp             TCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSC--CCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEEC---
T ss_pred             CCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCC--CcChhcccCccCcEEEEecchhhcCCcccceEEEEc---
Confidence            999999999999999999999999999999998875321  112211111235799999999999999999999965   


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  401 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  401 (459)
                      +++..+.+.....    ....+++.++|.++..+|++.      .+++++.+++++++++++.+.|+ ++|    +++..
T Consensus       251 ~~~~~~~l~~~~~----~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~  315 (386)
T 1u08_A          251 PAPISAEIRKVHQ----YLTFSVNTPAQLALADMLRAE------PEHYLALPDFYRQKRDILVNALN-ESR----LEILP  315 (386)
T ss_dssp             CHHHHHHHHHHHH----HHTSSCCHHHHHHHHHHHHHC------THHHHTHHHHHHHHHHHHHHHTT-SSS----CEECC
T ss_pred             CHHHHHHHHHHHH----hhccCCChHHHHHHHHHHhCC------cHHHHHHHHHHHHHHHHHHHHHH-HCC----CeecC
Confidence            7775555443222    222356677777777776532      13367889999999999999999 876    57777


Q ss_pred             CCcceeeecCC------CH-HHHHHHHhcccEEEcCC--------C----cEEEccCChhhHHHHHHHHHH
Q 012647          402 RQIGMFSFTGL------NK-AQSDNMTNKWHVYMTKD--------G----RISLAGLSLAKCEYLADAIID  453 (459)
Q Consensus       402 ~~~g~f~~~~l------~~-~~~~~ll~~~gI~v~~g--------g----Ris~~~~~~e~i~~~~~~l~~  453 (459)
                      +++|+|+|+.+      +. ++.++|++++||.+.||        +    |||++. +++++++++++|++
T Consensus       316 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~  385 (386)
T 1u08_A          316 CEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERLRQ  385 (386)
T ss_dssp             CCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS-CHHHHHHHHHHHTT
T ss_pred             CCceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcC-CHHHHHHHHHHHhh
Confidence            88899988754      23 44566776789999764        2    999987 89999999999864

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=100.00  E-value=3.6e-43  Score=347.33  Aligned_cols=339  Identities=14%  Similarity=0.115  Sum_probs=274.5

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      ++++|||+.|.+    ..+ .++.+.+++.+.+.... ..|++ .| +++|+++++++...++..+++++|++  |+|++
T Consensus        22 g~~~idl~~~~~----~~~-~~~~v~~a~~~~~~~~~-~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~--t~g~~   91 (377)
T 3fdb_A           22 GQGVLPLWVAES----DFS-TCPAVLQAITDAVQREA-FGYQP-DG-SLLSQATAEFYADRYGYQARPEWIFP--IPDVV   91 (377)
T ss_dssp             CTTSEECCSSCC----CSC-CCHHHHHHHHHHHHTTC-CSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEE--ESCHH
T ss_pred             CCCeeeecccCC----CCC-CCHHHHHHHHHHHHcCC-CCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEE--eCChH
Confidence            468999999976    444 38999999999887643 68988 77 89999999999877777777899999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      ++++++.+  ..+.+||+|+++.|+|..+...++..|++++.+|+++  +  +|++++++++++   +++++++++||||
T Consensus        92 ~a~~~~~~--~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~--~--~d~~~l~~~l~~---~~~~v~i~~p~np  162 (377)
T 3fdb_A           92 RGLYIAID--HFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDATG--G--INLHDVEKGFQA---GARSILLCNPYNP  162 (377)
T ss_dssp             HHHHHHHH--HHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECTT--S--CCHHHHHHHHHT---TCCEEEEESSBTT
T ss_pred             HHHHHHHH--HhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCC--C--CCHHHHHHHhcc---CCCEEEEeCCCCC
Confidence            99999843  3467999999999999999999999999999999842  2  999999999987   5678888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+++.+++++|+++|++||+++|+||+|.++.+++. ....++..+ ...++++++.||||.+|++|+|+||+  +++
T Consensus       163 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~-~~~~~~i~~~s~sK~~g~~G~r~G~~--~~~  238 (377)
T 3fdb_A          163 LGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQ-HTVAAGVSD-TAASVCITITAPSKAWNIAGLKCAQI--IFS  238 (377)
T ss_dssp             TTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSC-CCCGGGSCH-HHHHHEEEEECSTTTTTCGGGCCEEE--ECC
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCC-CCcccHHHc-cCCCcEEEEEeChHhccCcchhheEE--EeC
Confidence            99999999999999999999999999999999887530 111222111 12457899999999999999999998  455


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCcccc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFI  400 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~  400 (459)
                      +++..+.    +.........+++.+++.++...|.+.      .+++++.+++++++++++.+.|+ +. +   ++.+.
T Consensus       239 ~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~~~---~~~~~  304 (377)
T 3fdb_A          239 NPSDAEH----WQQLSPVIKDGASTLGLIAAEAAYRYG------TDFLNQEVAYLKNNHDFLLHEIP-KRIP---GAKIT  304 (377)
T ss_dssp             SHHHHHH----HHHSCHHHHCCCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HHST---TCEEC
T ss_pred             CHHHHHH----HHHHHHhhcCCCCHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHH-hhCC---CceEe
Confidence            6774443    333333334477888888877776543      23468889999999999999999 74 2   26888


Q ss_pred             cCCcceeeecCC-----CHHHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          401 LRQIGMFSFTGL-----NKAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       401 ~~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      .+++++++|+.+     +.++++.+++++||.+.||        +  |||++. +++++++++++|+++++++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~-~~e~i~~~l~~l~~~l~~~  376 (377)
T 3fdb_A          305 PMQATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFAT-SREVLEEAIDRMAKAVSHH  376 (377)
T ss_dssp             CCSBCSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHTTC
T ss_pred             cCCeeEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHhhc
Confidence            899999988744     4467888888789999876        2  999997 8999999999999998865

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=100.00  E-value=1.9e-42  Score=346.93  Aligned_cols=370  Identities=15%  Similarity=0.152  Sum_probs=279.9

Q ss_pred             CCccchhHHHhhhCC-CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhc----
Q 012647           67 PDPILGVSEAFKADT-DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFG----  141 (459)
Q Consensus        67 ~~~i~~~~~~~~~~~-~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~----  141 (459)
                      ++++.++.+.+.... .+++|+|+.|.|-.....+ .++.+.+++.+.+.......|++..|..++|+++++++..    
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~   94 (416)
T 1bw0_A           16 FNPIRTVSDNAKPSPSPKPIIKLSVGDPTLDKNLL-TSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVH   94 (416)
T ss_dssp             CCHHHHHHHTCCCCCSCSCCEECCCCCTTTTSCSC-CCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCC
T ss_pred             ccHHHHHHHHHHHhhcCCCeEEecCcCCCcccCCC-CCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcc
Confidence            344555554443222 2478999999972211233 3889999999888654346798888999999999999872    


Q ss_pred             --CCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHH
Q 012647          142 --ADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGM  219 (459)
Q Consensus       142 --~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l  219 (459)
                        ..|..+++++|++  |+|++++++++...  .+.+||+|++++|+|..+...++..|++++.+|+++++++.+|++.+
T Consensus        95 ~~~~~~~~~~~~v~~--~~g~~~al~~~~~~--l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l  170 (416)
T 1bw0_A           95 KEELKSTIVKDNVVL--CSGGSHGILMAITA--ICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEI  170 (416)
T ss_dssp             STTTGGGCCGGGEEE--ESHHHHHHHHHHHH--HCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHH
T ss_pred             cccCCCCCCcceEEE--eCChHHHHHHHHHH--hCCCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHH
Confidence              3566677899999  99999999998443  36799999999999999999999999999999986544678999999


Q ss_pred             HHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCC--ChhHHHHHHhcCCeEE
Q 012647          220 IADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN--DASSVRLFATRGMELL  297 (459)
Q Consensus       220 ~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~--~~~~~~~~~~~~~~~i  297 (459)
                      ++++++   +++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++...  ...++.. ....++++
T Consensus       171 ~~~l~~---~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~-~~~~~~~i  246 (416)
T 1bw0_A          171 RRLKDD---KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVAD-FETTVPRV  246 (416)
T ss_dssp             HHHCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTS-SCCSCCEE
T ss_pred             HHHhcc---CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHH-ccCCCcEE
Confidence            999875   67788889999999999999999999999999999999999999987653200  1111111 12234689


Q ss_pred             EEEcCCcCcccCCCCcceEEEEeCCh-hHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012647          298 VAQSYSKNLGLYAERIGAMNVVCSSS-DLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI  376 (459)
Q Consensus       298 ~~~S~SK~~~~~G~RiG~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~  376 (459)
                      +++||||.|+++|+|+||+++  +++ +..+.+...+...... ..+++.++|.++..+|+...     .+.+++.++++
T Consensus       247 ~~~s~sK~~~~~Glr~G~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~  318 (416)
T 1bw0_A          247 ILGGTAKNLVVPGWRLGWLLY--VDPHGNGPSFLEGLKRVGML-VCGPCTVVQAALGEALLNTP-----QEHLDQIVAKI  318 (416)
T ss_dssp             EEEESTTTTSCGGGCCEEEEE--ECTTCSCHHHHHHHHHHHHH-HTCSCHHHHHHHHHHHHSSC-----HHHHHHHHHHH
T ss_pred             EEecchhhCCCCCceEEEEEe--eCchhhHHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHhccc-----HHHHHHHHHHH
Confidence            999999999999999999954  343 3444454433322111 23677788888877776421     13367888899


Q ss_pred             HHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC---------CH-HHHHHHHhcccEEEcCC------C--cEEEcc
Q 012647          377 KNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---------NK-AQSDNMTNKWHVYMTKD------G--RISLAG  438 (459)
Q Consensus       377 ~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l---------~~-~~~~~ll~~~gI~v~~g------g--Ris~~~  438 (459)
                      +++++++.+.|+ +++   ++.+..+.+|+|+|+.+         +. +++++|++++||.+.||      +  |||++.
T Consensus       319 ~~~~~~l~~~L~-~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~~  394 (416)
T 1bw0_A          319 EESAMYLYNHIG-ECI---GLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTR  394 (416)
T ss_dssp             HHHHHHHHHHHT-TST---TEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS
T ss_pred             HHHHHHHHHHHH-hCC---CCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEecC
Confidence            999999999999 762   26667778888888643         33 45677776679999886      2  999975


Q ss_pred             CChhhHHHHHHHHHHHHhhc
Q 012647          439 LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       439 ~~~e~i~~~~~~l~~~~~~~  458 (459)
                       +++++++++++|.+++++.
T Consensus       395 -~~e~l~~~l~~l~~~l~~~  413 (416)
T 1bw0_A          395 -PVEVYREAVERIKAFCQRH  413 (416)
T ss_dssp             -CHHHHHHHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHHHHHh
Confidence             8999999999999998764

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=100.00  E-value=1.1e-42  Score=349.82  Aligned_cols=371  Identities=15%  Similarity=0.165  Sum_probs=272.6

Q ss_pred             CCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHH---------HHHhhcCCCCCCCCCcccHHH
Q 012647           61 GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAE---------NLMLERGENKEYLPIEGLAAF  131 (459)
Q Consensus        61 ~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~---------~~~~~~~~~~~Y~~~~g~~~l  131 (459)
                      ++...+++++.++.+..... .+++|+|+.|.| |...+|.  .....++         ......  ..+|.+..|++++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~G~p-~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~l   83 (425)
T 2r2n_A           10 ASAARNPSPIRTMTDILSRG-PKSMISLAGGLP-NPNMFPF--KTAVITVENGKTIQFGEEMMKR--ALQYSPSAGIPEL   83 (425)
T ss_dssp             HHHTCCCCSGGGHHHHHHHS-CTTCEECCCCCC-CGGGCSE--EEEEEEETTSCCEEECHHHHHH--HTSCCCTTCCHHH
T ss_pred             HHhcCCCchHHHHHHHhhcC-CCCeEEcCCcCC-CchhCCH--HHHHHHHhhcccccccccchhh--hcCCCCCCCCHHH
Confidence            34445567787777666532 357999999998 4333321  1000000         010111  2579999999999


Q ss_pred             HHHHHHHHhcCCCCccc-------cCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeee
Q 012647          132 NKVTAELLFGADNSVLK-------EQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEY  204 (459)
Q Consensus       132 r~aia~~l~~~~~~~~~-------~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v  204 (459)
                      |+++++++...+|...+       +++|++  |+|++++++++...  .+.+||+|++++|+|..|...++..|++++.+
T Consensus        84 r~~ia~~l~~~~g~~~~~~~~~~~~~~i~~--t~G~~~al~~~~~~--l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v  159 (425)
T 2r2n_A           84 LSWLKQLQIKLHNPPTIHYPPSQGQMDLCV--TSGSQQGLCKVFEM--IINPGDNVLLDEPAYSGTLQSLHPLGCNIINV  159 (425)
T ss_dssp             HHHHHHHHHHHHCCTTTTSCGGGTCEEEEE--ESSHHHHHHHHHHH--HCCTTCEEEEESSCCHHHHHHHGGGTCEEEEE
T ss_pred             HHHHHHHHHHhcCCCCccccccCCcCcEEE--eCcHHHHHHHHHHH--hCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEe
Confidence            99999998776676553       368999  99999999998433  36799999999999999999999999999999


Q ss_pred             eeecCCCCCCCHHHHHHHHHcCC---------CCcEEE-EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCC
Q 012647          205 RYYDPKTVGLDFEGMIADIKAAP---------GGSFIL-LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGF  274 (459)
Q Consensus       205 ~~~~~~~~~~d~e~l~~~i~~~~---------~~~~~i-i~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~  274 (459)
                      |+++   .++|++.|++.++..+         ++++++ ++++||||||.+++.+++++|+++|++||++||+||+|.++
T Consensus       160 ~~~~---~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~  236 (425)
T 2r2n_A          160 ASDE---SGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFL  236 (425)
T ss_dssp             CEET---TEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGG
T ss_pred             CcCC---CCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccc
Confidence            9853   2589999999997311         244555 45899999999999999999999999999999999999988


Q ss_pred             CCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHH
Q 012647          275 ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVAN  354 (459)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (459)
                      .+++.  ...++..+ +..+++++++||||.++ +|+|+||+++   ++++++.+..    .......+++.++|.++..
T Consensus       237 ~~~g~--~~~~~~~~-~~~~~~i~~~s~SK~~~-~GlRiG~~~~---~~~l~~~l~~----~~~~~~~~~~~~~q~a~~~  305 (425)
T 2r2n_A          237 QFNKF--RVPTFLSM-DVDGRVIRADSFSKIIS-SGLRIGFLTG---PKPLIERVIL----HIQVSTLHPSTFNQLMISQ  305 (425)
T ss_dssp             BSSSS--CCCCTGGG-CTTSCEEEEEESTTTTC-STTCCEEEEE---EHHHHHHHHH----HHHTTTCSSCHHHHHHHHH
T ss_pred             cCCCC--CCCCcccc-CCCCCEEEEccchhhcc-CccceEEEec---CHHHHHHHHH----HHHHhcCCCCHHHHHHHHH
Confidence            77532  11122222 33468999999999999 9999999976   7775554443    3223344778889988887


Q ss_pred             HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC-----CHHHHHHHHhcccEEEc
Q 012647          355 VVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----NKAQSDNMTNKWHVYMT  429 (459)
Q Consensus       355 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~  429 (459)
                      +|++.. .+.|.+++++++++++++++.+.+.|+ +. +|+...+..+.+|+|+|+.+     +.+++.+++.++||.+.
T Consensus       306 ~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~-~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~l~~~gv~v~  382 (425)
T 2r2n_A          306 LLHEWG-EEGFMAHVDRVIDFYSNQKDAILAAAD-KW-LTGLAEWHVPAAGMFLWIKVKGINDVKELIEEKAVKMGVLML  382 (425)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-CSSSEEECCCSBSSEEEEEETTCSCCHHHHHTHHHHTTEECE
T ss_pred             HHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHHH-HH-CCCCeEEeCCCceEEEEEEeCCCCCHHHHHHHHHHHCCcEEe
Confidence            776411 122456688999999999999999998 74 11112456788999999754     23544555556799998


Q ss_pred             CC-----------C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          430 KD-----------G--RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       430 ~g-----------g--Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      ||           +  |||++..+++++++++++|+++++++
T Consensus       383 pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~  424 (425)
T 2r2n_A          383 PGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKES  424 (425)
T ss_dssp             EGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence            74           2  99998559999999999999998753

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=100.00  E-value=1.8e-42  Score=346.15  Aligned_cols=364  Identities=17%  Similarity=0.144  Sum_probs=278.6

Q ss_pred             CCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHh
Q 012647           61 GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLF  140 (459)
Q Consensus        61 ~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~  140 (459)
                      ++.......+. ....+.++ ++++|+|+.|.|. ....+ .++.+.+++.+.+.... ..|++..|.+++|+++++++.
T Consensus        18 ~~~~~~~~~~~-~~~~~~~~-g~~~i~l~~~~~~-~~~~~-~~~~v~~a~~~~~~~~~-~~y~~~~g~~~l~~~la~~l~   92 (406)
T 1xi9_A           18 SVEYAIRDVVL-PARELEKK-GIKVIRLNIGDPV-KFDFQ-PPEHMKEAYCKAIKEGH-NYYGDSEGLPELRKAIVEREK   92 (406)
T ss_dssp             TCCC--------CHHHHHHT-TCCCEECCCCCGG-GTTCC-CCHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHH
T ss_pred             cCChhHHHHHH-HHHHHHHc-CCCEEEecCCCCC-cCCCC-CCHHHHHHHHHHHhcCC-CCCCCCCCcHHHHHHHHHHHH
Confidence            34333344444 44555544 4689999999872 11223 37889999988886543 579888899999999999998


Q ss_pred             cCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHH
Q 012647          141 GADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMI  220 (459)
Q Consensus       141 ~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~  220 (459)
                      ..+|..+++++|++  |+|++++++++.+.  .+.+||+|++++|+|..+...++..|++++.+|+++++++.+|++.++
T Consensus        93 ~~~g~~~~~~~v~~--t~g~~~al~~~~~~--l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~  168 (406)
T 1xi9_A           93 RKNGVDITPDDVRV--TAAVTEALQLIFGA--LLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIR  168 (406)
T ss_dssp             HHHCCCCCGGGEEE--ESHHHHHHHHHHHH--HCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHH
T ss_pred             HhcCCCCCHHHEEE--cCChHHHHHHHHHH--hCCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHH
Confidence            76677777899999  99999999998443  367999999999999999999999999999999964356778999999


Q ss_pred             HHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe-EEEE
Q 012647          221 ADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME-LLVA  299 (459)
Q Consensus       221 ~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~-~i~~  299 (459)
                      +++++   +++++++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++   ...++..+ + .++ ++++
T Consensus       169 ~~l~~---~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~---~~~~~~~~-~-~~~~~i~~  240 (406)
T 1xi9_A          169 KKITD---RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEG---EHISPGSL-T-KDVPVIVM  240 (406)
T ss_dssp             HHCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSS---CCCCHHHH-C-SSSCEEEE
T ss_pred             HhhCc---CceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCC---CCCCHHHc-C-CCceEEEE
Confidence            99975   67888889999999999999999999999999999999999999988642   12233333 2 456 8999


Q ss_pred             EcCCcCcccCCCCcceEEEEeCCh----hHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012647          300 QSYSKNLGLYAERIGAMNVVCSSS----DLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR  375 (459)
Q Consensus       300 ~S~SK~~~~~G~RiG~~~~v~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~  375 (459)
                      +||||.++++|+|+||+++ +.++    +.++.+.....    .. .+++.++|.++..+|+.. .     +.+++++++
T Consensus       241 ~s~sK~~~~~G~r~G~~~~-~~~~~~~~~l~~~l~~~~~----~~-~~~~~~~~~a~~~~l~~~-~-----~~~~~~~~~  308 (406)
T 1xi9_A          241 NGLSKVYFATGWRLGYMYF-VDPENKLSEVREAIDRLAR----IR-LCPNTPAQFAAIAGLTGP-M-----DYLKEYMKK  308 (406)
T ss_dssp             EESTTTTCCGGGCCEEEEE-ECTTCTTHHHHHHHHHHHH----HT-CCSCSHHHHHHHHHHHSC-C-----HHHHHHHHH
T ss_pred             eccccccCCCccEEEEEEE-ecCchhHHHHHHHHHHHHH----hh-cCCCHHHHHHHHHHHhCC-c-----HHHHHHHHH
Confidence            9999999999999999961 1366    75555443222    22 356677788887777432 1     226788899


Q ss_pred             HHHHHHHHHHHHhhccCCCCCcccccCCcceeeecC------CCH-HHHHHHHhcccEEEcCC--------C--cEEEcc
Q 012647          376 IKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTG------LNK-AQSDNMTNKWHVYMTKD--------G--RISLAG  438 (459)
Q Consensus       376 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~------l~~-~~~~~ll~~~gI~v~~g--------g--Ris~~~  438 (459)
                      ++++++++.+.|+ +++   ++.+..+++|+|+|+.      .+. ++.++|++++||.+.+|        +  ||+++.
T Consensus       309 ~~~~~~~l~~~L~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~~  384 (406)
T 1xi9_A          309 LKERRDYIYKRLN-EIP---GISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLP  384 (406)
T ss_dssp             HHHHHHHHHHHHH-TST---TEECCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCS
T ss_pred             HHHHHHHHHHHHH-hCC---CCeeecCCeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEecC
Confidence            9999999999999 772   2677778889998853      233 45667775679999875        2  999984


Q ss_pred             CChhhHHHHHHHHHHHHhhc
Q 012647          439 LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       439 ~~~e~i~~~~~~l~~~~~~~  458 (459)
                       +++++++++++|.++++++
T Consensus       385 -~~~~i~~~~~~l~~~l~~~  403 (406)
T 1xi9_A          385 -PIEILEEAMDRFEKFMKER  403 (406)
T ss_dssp             -CHHHHHHHHHHHHHHHHHC
T ss_pred             -CHHHHHHHHHHHHHHHHHH
Confidence             9999999999999998764

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=100.00  E-value=1.9e-42  Score=342.21  Aligned_cols=349  Identities=12%  Similarity=0.052  Sum_probs=273.2

Q ss_pred             CCCccchhHHHhhh-CCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCC
Q 012647           66 PPDPILGVSEAFKA-DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADN  144 (459)
Q Consensus        66 ~~~~i~~~~~~~~~-~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~  144 (459)
                      +++++.++.+.++. ..+.++|||+.|.+    ..+ .++.+.+++.+.+..  ...|++..|.+++|+++++++...+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~g~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~--~~~y~~~~g~~~lr~~la~~l~~~~g   77 (376)
T 3ezs_A            5 EPYPFERLRALLKEITPKKRGLDLGIGEP----QFE-TPKFIQDALKNHTHS--LNIYPKSAFEESLRAAQRGFFKRRFK   77 (376)
T ss_dssp             CCCHHHHHHHHHTTCCCSSCCCBCSSCCC----CSC-CCHHHHHHHHTTGGG--GGSCCCTTCCHHHHHHHHHHHHHHHS
T ss_pred             CcchHHHHHHHHHhhhccCCEEEeCCCCC----CCC-CCHHHHHHHHHhhhh--cCCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            45555555554432 11238999999987    444 378999999887732  37898888999999999999977667


Q ss_pred             CccccCceEEeecccchhHHHHHHHHHHHhCC--CCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHH
Q 012647          145 SVLKEQRVATVQGLSGTGSLRLAAALIERYFP--GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIAD  222 (459)
Q Consensus       145 ~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~--gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~  222 (459)
                      ..+++++|++  |+|++++++++.+  ..+.+  ||+|+++.|+|..+...++..|++++.+|+++++  ++++ +++++
T Consensus        78 ~~~~~~~i~~--t~g~~~al~~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~-~l~~~  150 (376)
T 3ezs_A           78 IELKENELIS--TLGSREVLFNFPS--FVLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKEN--DFTP-SLNEK  150 (376)
T ss_dssp             CCCCGGGEEE--ESSSHHHHHHHHH--HHTTTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGG--TSCC-CCCHH
T ss_pred             CCCCHHHEEE--CcCcHHHHHHHHH--HHcCCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCC--Ccch-hHHhh
Confidence            6667899999  9999999999843  34678  9999999999999999999999999999985433  3444 66666


Q ss_pred             HHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-----cCCeEE
Q 012647          223 IKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-----RGMELL  297 (459)
Q Consensus       223 i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-----~~~~~i  297 (459)
                      +.+   +++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.   ..++....+     ..++++
T Consensus       151 ~~~---~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i  224 (376)
T 3ezs_A          151 ELQ---EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTP---PPSLLEACMLAGNEAFKNVL  224 (376)
T ss_dssp             HHH---HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSC---CCCHHHHHHHTTCTTCTTEE
T ss_pred             hcc---CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC---CCCHHHccccccccccCcEE
Confidence            765   566777799999999999999999999999999999999999999887641   222222222     457899


Q ss_pred             EEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012647          298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  377 (459)
Q Consensus       298 ~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  377 (459)
                      ++.||||.+|++|+|+||+++   +++..+.+.    ........+++.++|.++...|++.+       ++++.+++++
T Consensus       225 ~~~s~sK~~g~~G~r~G~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~l~~~~-------~~~~~~~~~~  290 (376)
T 3ezs_A          225 VIHSLSKRSSAPGLRSGFIAG---DSRLLEKYK----AFRAYLGYTSANAIQKASEAAWLDDR-------HAEFFRNIYA  290 (376)
T ss_dssp             EEEESTTTTTCGGGCCEEEEE---CHHHHHHHH----HHHTTTCCCCCHHHHHHHHHHHHCSH-------HHHHHHHHHH
T ss_pred             EEecchhccCCccceeEEEee---CHHHHHHHH----HHHhhhcCCCChHHHHHHHHHHhCcH-------HHHHHHHHHH
Confidence            999999999999999999966   888554443    33333344678888888887777642       3678889999


Q ss_pred             HHHHHHHHHHhhccCCCCCcccccCCcceeeecCCC--HHHHHHHHhcccEEEcCC----------C--cEEEccCChhh
Q 012647          378 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN--KAQSDNMTNKWHVYMTKD----------G--RISLAGLSLAK  443 (459)
Q Consensus       378 ~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~--~~~~~~ll~~~gI~v~~g----------g--Ris~~~~~~e~  443 (459)
                      ++++.+.+.|+   +    +.  .+.+|+|+|+.+.  .++.++|++++||.+.||          +  ||+++. ++++
T Consensus       291 ~~~~~l~~~l~---~----~~--~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~-~~~~  360 (376)
T 3ezs_A          291 NNLKLARKIFK---N----TL--IYPYSFYVYLPVQNGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY-DTPL  360 (376)
T ss_dssp             HHHHHHHHHST---T----CC--CCSBSSEEEEECSCHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS-CHHH
T ss_pred             HHHHHHHHHhc---C----CC--CCCcceEEEEECCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC-CHHH
Confidence            99999998886   3    33  5678999998773  455677777579999864          1  999987 9999


Q ss_pred             HHHHHHHHHHHHhhc
Q 012647          444 CEYLADAIIDSYHNV  458 (459)
Q Consensus       444 i~~~~~~l~~~~~~~  458 (459)
                      +++++++|++++++.
T Consensus       361 i~~~l~~l~~~l~~~  375 (376)
T 3ezs_A          361 LEKPLEIIETYRENH  375 (376)
T ss_dssp             HHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999998764

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=100.00  E-value=5.5e-43  Score=353.12  Aligned_cols=352  Identities=13%  Similarity=0.082  Sum_probs=277.0

Q ss_pred             CCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        81 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      .++++|+|+.|.|    ..+ .++.+.+++.+.+.......|++..|.+++|+++++++...+|..+++++|++  |+|+
T Consensus        42 ~g~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~--t~g~  114 (437)
T 3g0t_A           42 TGTKFCRMEMGVP----GLP-APQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVP--TVGS  114 (437)
T ss_dssp             HTCCCEECCCCSC----CSC-CCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESHH
T ss_pred             cCCCEEeccCcCC----CCC-CCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEE--eCCH
Confidence            3568999999997    444 38999999998886533378988889999999999999877777778999999  9999


Q ss_pred             hhHHHHHHHHHHHh--CCCC--EEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeC
Q 012647          161 TGSLRLAAALIERY--FPGA--KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG  236 (459)
Q Consensus       161 t~a~~l~~~~~~~~--~~gd--~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~  236 (459)
                      +++++++.+  ..+  .+||  +|+++.|+|..+...++..|++++.+|++ ++++.+|++.++++++.  +++++++++
T Consensus       115 t~al~~~~~--~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~--~~~~~v~l~  189 (437)
T 3g0t_A          115 MQGCFVSFL--VANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLF-EYRGEKLREKLESYLQT--GQFCSIIYS  189 (437)
T ss_dssp             HHHHHHHHH--HHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGG-GGCTTHHHHHHHHHHTT--TCCCEEEEE
T ss_pred             HHHHHHHHH--HHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeec-CCCCccCHHHHHHHHhc--CCceEEEEe
Confidence            999999843  335  7999  99999999999999999999999999996 55678999999999943  267788889


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCCh---hHH-HHHHhcCCeEEEEEcCCcCcccCCCC
Q 012647          237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA---SSV-RLFATRGMELLVAQSYSKNLGLYAER  312 (459)
Q Consensus       237 ~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~---~~~-~~~~~~~~~~i~~~S~SK~~~~~G~R  312 (459)
                      +||||||.+++.+++++|+++|++||+++|+||+|..+.+++. ...   +++ ..+....++++++.||||.+|++|+|
T Consensus       190 ~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r  268 (437)
T 3g0t_A          190 NPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKD-YSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQR  268 (437)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSC-CCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGC
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCC-cCcccccchhhccCCCCCcEEEEEcCccCCCCccce
Confidence            9999999999999999999999999999999999998876521 111   000 12222367899999999999999999


Q ss_pred             cceEEEEeCChhHHH-HH---HH----------HHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012647          313 IGAMNVVCSSSDLAA-RV---KS----------QLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  378 (459)
Q Consensus       313 iG~~~~v~~~~~~~~-~~---~~----------~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  378 (459)
                      +||+++   +++.++ .+   ..          .+.........+++.++|.++..+|++..   .|.+++++.++++++
T Consensus       269 ~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~  342 (437)
T 3g0t_A          269 IGVLMI---SGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACN---DGEYNFRDSVIEYGR  342 (437)
T ss_dssp             CEEEEE---CHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHH---TTSCCHHHHHHHHHH
T ss_pred             eEEEEE---CHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcH---hHHHHHHHHHHHHHH
Confidence            999976   777444 30   00          03333223344778888888877776432   122226788999999


Q ss_pred             HHHHHHHHHhhccCCCCCcccc-------cCCcceeeecCC---CH-HHHHHHHhcccEEEcCC--------C--cEEEc
Q 012647          379 VRQKLFDSLSAKDKSGKDWSFI-------LRQIGMFSFTGL---NK-AQSDNMTNKWHVYMTKD--------G--RISLA  437 (459)
Q Consensus       379 ~~~~l~~~L~~~~g~~~~~~~~-------~~~~g~f~~~~l---~~-~~~~~ll~~~gI~v~~g--------g--Ris~~  437 (459)
                      +++++.+.|+ ++|    +++.       ++.+++|+|+.+   +. ++.+.|++ +||.+.|+        +  |||++
T Consensus       343 ~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gi~v~~~~~~~~~~~~~iRis~~  416 (437)
T 3g0t_A          343 KARIMKKMFL-DNG----FNIVYDKDGNEPLADGFYFTVGYKGMDSSKLIEKFVR-YGMCAITLKTTGSKRNEAMRICTS  416 (437)
T ss_dssp             HHHHHHHHHH-TTT----EEESSCEETTEECCSSSEEEEEETTCCHHHHHHHHHH-TTEECEESTTTTCCCTTCEEEECS
T ss_pred             HHHHHHHHHH-HcC----CEEeccccCCCCCceeEEEEEecCCCCHHHHHHHHHH-cCeEEeeccccCCCCCCEEEEEEe
Confidence            9999999999 876    5666       337889988754   44 45666666 59999886        2  99999


Q ss_pred             cCChhhHHHHHHHHHHHHhh
Q 012647          438 GLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       438 ~~~~e~i~~~~~~l~~~~~~  457 (459)
                      ..+++++++++++|++++++
T Consensus       417 ~~~~e~i~~~~~~l~~~~~~  436 (437)
T 3g0t_A          417 LLPESQFPDLEKRLQMLNAE  436 (437)
T ss_dssp             SSCGGGHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhc
Confidence            77999999999999998864

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=1.2e-42  Score=343.70  Aligned_cols=336  Identities=15%  Similarity=0.079  Sum_probs=268.4

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccC-ceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~gg  160 (459)
                      +.++|||+.|.+    ..++ ++.+.+++.+.+.......|++..|..++|+++++++...+|..++++ +|++  |+|+
T Consensus        24 g~~~idl~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~--~~g~   96 (376)
T 2dou_A           24 GVGLIDLSIGST----DLPP-PEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALA--LIGS   96 (376)
T ss_dssp             TCCCEECSSCCC----CCCC-CHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEE--ESSH
T ss_pred             CCCEEeccCCCC----CCCC-CHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEE--cCCc
Confidence            467999999987    3333 788999999887543236787767999999999999866556656666 8999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      +++++++.+.  .+.+||+|++++|+|..+...++..|++++.+|+  ++++.+|++.+++++++   +++++++++|||
T Consensus        97 ~~a~~~~~~~--l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~l~~---~~~~v~l~~p~n  169 (376)
T 2dou_A           97 QEGLAHLLLA--LTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPL--REDGLADLKAVPEGVWR---EAKVLLLNYPNN  169 (376)
T ss_dssp             HHHHHHHHHH--HCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECB--CTTSSBCGGGSCHHHHH---HEEEEEECSSCT
T ss_pred             HHHHHHHHHH--hcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeC--CCCCCCCHHHHHHhhcc---CceEEEECCCCC
Confidence            9999998433  3669999999999999999999999999999998  45677999999999975   678888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      |||.+++.+++++|+++|++||+++|+||+|.++.+++...+..   .+.+..+++++++||||.+|++|+|+||+++  
T Consensus       170 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~---~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~--  244 (376)
T 2dou_A          170 PTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPL---ALPGAKERVVELFSLSKSYNLAGFRLGFALG--  244 (376)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGG---GSTTGGGTEEEEEEHHHHHTCGGGCCEEEEE--
T ss_pred             CcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChh---hcCCCCCcEEEEecchhhcCChhheeEEEec--
Confidence            99999999999999999999999999999999988653111111   1122335789999999999999999999966  


Q ss_pred             CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012647          321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  400 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  400 (459)
                       +++.++.+....    .....+++.++|.++..+|++.      .+++++.+++++++++++.+.|+ ++     +.+.
T Consensus       245 -~~~~~~~l~~~~----~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~-----~~~~  307 (376)
T 2dou_A          245 -SEEALARLERVK----GVIDFNQYAGVLRMGVEALKTP------KEVVRGYARVYRERALGMAEALK-GV-----LSLL  307 (376)
T ss_dssp             -CHHHHHHHHHHH----HHHCCCSCHHHHHHHHHHHTSC------HHHHHHHHHHHHHHHHHHHHHHT-TT-----SEEC
T ss_pred             -CHHHHHHHHHHH----HhcccCCCHHHHHHHHHHHhCc------HHHHHHHHHHHHHHHHHHHHHHH-Hh-----cCcc
Confidence             888555554332    2223356778888888888763      23467889999999999999998 75     3666


Q ss_pred             cCCcceeeecCCC-----HHHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHHHH
Q 012647          401 LRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       401 ~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~~~  455 (459)
                      .+++|+|+|+.+.     .++.++|+++ ||.+.||        +  ||+++. +++++++++++|++++
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~Ris~~~-~~~~i~~~l~~l~~~l  375 (376)
T 2dou_A          308 PPRATMYLWGRLPEGVDDLEFGLRLVER-GVALAPGRGFGPGGKGFVRIALVR-PLEELLEAAKRIREAL  375 (376)
T ss_dssp             CCCBSSEEEEECCTTCCHHHHHHHHHHT-TEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHTC
T ss_pred             CCCeeEEEEEECCCCCCHHHHHHHHHHC-CEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHh
Confidence            7788999887552     3456777776 9999875        2  999987 8999999999998765

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=100.00  E-value=1.6e-41  Score=342.47  Aligned_cols=354  Identities=16%  Similarity=0.178  Sum_probs=275.8

Q ss_pred             hhhCCCC-CceeecccccCCCCCCccCcHHHHHHHHHHhhcC-C----------CCCCCCCcccHHHHHHHHHHHhcC--
Q 012647           77 FKADTDE-KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-E----------NKEYLPIEGLAAFNKVTAELLFGA--  142 (459)
Q Consensus        77 ~~~~~~~-~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~----------~~~Y~~~~g~~~lr~aia~~l~~~--  142 (459)
                      ++.++++ .+|+|+.+..      +...+.+.+++.+..... +          ...|.+..|.++||+++++++...  
T Consensus        31 y~~~~~p~~~i~lg~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~  104 (435)
T 3piu_A           31 YHEVHNTNGIIQMGLAEN------QLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRG  104 (435)
T ss_dssp             CBTTTBTTSBEECSSCCC------CSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTT
T ss_pred             CCcccCCCCeEEeccccc------cccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhC
Confidence            4444433 5788887653      334777888877754321 1          146989999999999999998743  


Q ss_pred             CCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh-hCCCCeeeeeeecCCCCCCCHHHHHH
Q 012647          143 DNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEYRYYDPKTVGLDFEGMIA  221 (459)
Q Consensus       143 ~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~G~~v~~v~~~~~~~~~~d~e~l~~  221 (459)
                      ++..+++++|++  |+||++++.++..  ..+.+||+|++++|+|..+...+. ..|++++.+|++++.++.+|++.+++
T Consensus       105 ~~~~~~~~~v~~--~~gg~~a~~~~~~--~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~  180 (435)
T 3piu_A          105 NKVTFDPNHLVL--TAGATSANETFIF--CLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEE  180 (435)
T ss_dssp             TSSCCCGGGEEE--EEHHHHHHHHHHH--HHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHH
T ss_pred             CCCCCCHHHEEE--cCChHHHHHHHHH--HhcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHH
Confidence            335566899999  9999999999843  346799999999999999998888 78999999999755568899999999


Q ss_pred             HHHc---CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc------
Q 012647          222 DIKA---APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR------  292 (459)
Q Consensus       222 ~i~~---~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~------  292 (459)
                      ++++   ...+++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+...      
T Consensus       181 ~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~d~~  258 (435)
T 3piu_A          181 AYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP--SFISVMEVLKDRNCDEN  258 (435)
T ss_dssp             HHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS--CCCCHHHHHHC------
T ss_pred             HHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCcCHHHhccccccccc
Confidence            9875   123678888899999999999999999999999999999999999999776542  22233333332      


Q ss_pred             ---CCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012647          293 ---GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEM  369 (459)
Q Consensus       293 ---~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~  369 (459)
                         .++++++.||||.||++|+|+||++  +.+++..+.    +.....  +...+.++|.++..+|.+.++.   .+++
T Consensus       259 ~~~~~~~i~i~s~sK~~g~~G~r~G~~~--~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~l~~~~~~---~~~~  327 (435)
T 3piu_A          259 SEVWQRVHVVYSLSKDLGLPGFRVGAIY--SNDDMVVAA----ATKMSS--FGLVSSQTQHLLSAMLSDKKLT---KNYI  327 (435)
T ss_dssp             -CGGGGEEEEEESSSSSCCGGGCEEEEE--ESCHHHHHH----HHHHGG--GSCCCHHHHHHHHHHHHCHHHH---HHHH
T ss_pred             cCCCCCEEEEEeeecccCCCceeEEEEE--eCCHHHHHH----HHHHhh--cCCCCHHHHHHHHHHhcChHHH---HHHH
Confidence               4678999999999999999999994  445553333    332222  2356678888888888776553   3456


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCC-----------HHHHHHHHhcccEEEcCC-------
Q 012647          370 EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN-----------KAQSDNMTNKWHVYMTKD-------  431 (459)
Q Consensus       370 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~-----------~~~~~~ll~~~gI~v~~g-------  431 (459)
                      ++.+++++++++++.+.|+ ++|    +++..+++|+|+|+.+.           .+++++|++++||.+.||       
T Consensus       328 ~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~  402 (435)
T 3piu_A          328 AENHKRLKQRQKKLVSGLQ-KSG----ISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTE  402 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-TTT----CEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSS
T ss_pred             HHHHHHHHHHHHHHHHHHH-hcC----CcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCC
Confidence            7889999999999999999 876    67888888899998653           245678888779999875       


Q ss_pred             -C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          432 -G--RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       432 -g--Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                       +  ||+++..+++++++++++|+++++++
T Consensus       403 ~~~iRi~~~~~~~e~i~~~l~~l~~~l~~~  432 (435)
T 3piu_A          403 PGWFRVCFANLPERTLDLAMQRLKAFVGEY  432 (435)
T ss_dssp             TTEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeeCCCHHHHHHHHHHHHHHHHHH
Confidence             2  99998668999999999999999865

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=100.00  E-value=6.4e-42  Score=337.81  Aligned_cols=344  Identities=14%  Similarity=0.141  Sum_probs=271.6

Q ss_pred             CCCccchhHHHhhh--CCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCC
Q 012647           66 PPDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGAD  143 (459)
Q Consensus        66 ~~~~i~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~  143 (459)
                      +++++.++.+.+..  ..++++|+|+.|.+    ..++ ++.+.+++.+.+.... ..|++..|.+++|+++++++...+
T Consensus        10 ~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~-~~y~~~~~~~~l~~~la~~~~~~~   83 (370)
T 2z61_A           10 ESFEVMDILALAQKLESEGKKVIHLEIGEP----DFNT-PKPIVDEGIKSLKEGK-THYTDSRGILELREKISELYKDKY   83 (370)
T ss_dssp             CCCTTHHHHHHHHHHHHTTCCCEECCCCSC----SSCC-CHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHHHHS
T ss_pred             cccHHHHHHHHHHHHHhcCCCEEEccCCCC----CCCC-CHHHHHHHHHHHHcCc-cCCCCCCCCHHHHHHHHHHHHHHh
Confidence            45556655544432  12467999999987    3333 7889999998886543 679888899999999999998777


Q ss_pred             CCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHH
Q 012647          144 NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI  223 (459)
Q Consensus       144 ~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i  223 (459)
                      |..+++++|++  |+|++++++++.+.  .+.+||+|++++|+|..+...++..|++++.+|        +|++++++++
T Consensus        84 g~~~~~~~v~~--~~g~~~a~~~~~~~--~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~--------~d~~~l~~~l  151 (370)
T 2z61_A           84 KADIIPDNIII--TGGSSLGLFFALSS--IIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD--------FTVESLEEAL  151 (370)
T ss_dssp             SCCCCGGGEEE--ESSHHHHHHHHHHH--HCCTTCEEEEESSCCTHHHHHHHHTTCEEEEEC--------SSHHHHHHHC
T ss_pred             CCCCChhhEEE--CCChHHHHHHHHHH--hcCCCCEEEEeCCCchhHHHHHHHcCCEEEEeC--------CCHHHHHHhc
Confidence            77778899999  99999999998443  367999999999999999999999999988886        6899999998


Q ss_pred             HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCC
Q 012647          224 KAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS  303 (459)
Q Consensus       224 ~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S  303 (459)
                      ++   +++++++++||||||.+++.+    |.++|++||+++|+||+|..+.+++.   ..++..+.+..++++++.|||
T Consensus       152 ~~---~~~~v~~~~p~nptG~~~~~~----l~~~~~~~~~~li~De~~~~~~~~g~---~~~~~~~~~~~~~~i~~~s~s  221 (370)
T 2z61_A          152 SD---KTKAIIINSPSNPLGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGK---CYSAIEFDENLEKTILINGFS  221 (370)
T ss_dssp             CS---SEEEEEEESSCTTTCCCCCHH----HHHHHHHHCSEEEEECTTTTCBSSSC---CCCGGGTCTTCSSEEEEEEST
T ss_pred             cc---CceEEEEcCCCCCcCcccCHH----HHHHHHHcCCEEEEEcchhhcccCCC---CcCHHHccCCCCcEEEEecCh
Confidence            75   677888899999999999987    89999999999999999999876531   112212212346799999999


Q ss_pred             cCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCC-hhhHHHHHHHHHHHHHHHHHHHHH
Q 012647          304 KNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN-PALFDEWKAEMEMMAGRIKNVRQK  382 (459)
Q Consensus       304 K~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~  382 (459)
                      |.+|++|+|+||+++   +++..+.+...    ......+++.++|.++..+|+. .      .+++++.++++++++++
T Consensus       222 K~~~~~G~r~G~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~~  288 (370)
T 2z61_A          222 KLYAMTGWRIGYVIS---NDEIIEAILKL----QQNLFISAPTISQYAALKAFEKET------EREINSMIKEFDRRRRL  288 (370)
T ss_dssp             TTTTCGGGCCEEEEC---CHHHHHHHHHH----HHHHTSSSCHHHHHHHGGGGSHHH------HHHHHHHHHHHHHHHHH
T ss_pred             hccCCccceEEEEEE---CHHHHHHHHHH----HhhcccCCCHHHHHHHHHHHhccC------HHHHHHHHHHHHHHHHH
Confidence            999999999999865   77755554432    2222346778888888777764 2      23467889999999999


Q ss_pred             HHHHHhhccCCCCCcccccCCcceeeecCCC--H-HHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHH
Q 012647          383 LFDSLSAKDKSGKDWSFILRQIGMFSFTGLN--K-AQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLAD  449 (459)
Q Consensus       383 l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~--~-~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~  449 (459)
                      +.+.|+ ++|    +++..+++|+|+|+.+.  . ++.++|++++||.+.+|        +  ||+++. ++++++++++
T Consensus       289 l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~-~~~~i~~~~~  362 (370)
T 2z61_A          289 VLKYVK-DFG----WEVNNPIGAYYVFPNIGEDGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYAN-SYENIKEGLE  362 (370)
T ss_dssp             HHHHHH-HTT----CBCCCCCBTTEECCBCSSCHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCS-CHHHHHHHHH
T ss_pred             HHHHHH-HcC----CeecCCCcceEEEEecCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeC-CHHHHHHHHH
Confidence            999999 776    57777888999998763  3 45667775679999875        2  999996 9999999999


Q ss_pred             HHHHHHh
Q 012647          450 AIIDSYH  456 (459)
Q Consensus       450 ~l~~~~~  456 (459)
                      +|.++++
T Consensus       363 ~l~~~l~  369 (370)
T 2z61_A          363 RIKEFLN  369 (370)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            9999875

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=100.00  E-value=5.4e-41  Score=337.77  Aligned_cols=348  Identities=13%  Similarity=0.155  Sum_probs=269.0

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhh--------c--CCCCCCCCCcccHHHHHHHHHHHhcCCCCc--cccC
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE--------R--GENKEYLPIEGLAAFNKVTAELLFGADNSV--LKEQ  150 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~--------~--~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~--~~~~  150 (459)
                      ..+|+|+.++.      +..++.+.+++.+...        .  .....|++..|..++|+++++++...+|..  ++++
T Consensus        36 ~~~i~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~  109 (428)
T 1iay_A           36 NGVIQMGLAEN------QLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPE  109 (428)
T ss_dssp             TSBEECSSCCC------CSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTT
T ss_pred             Cceeeeccccc------hhhHHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChh
Confidence            36789987654      2225678888775321        0  012678888899999999999998666654  6688


Q ss_pred             ceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh-hhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---C
Q 012647          151 RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-NDARVPWSEYRYYDPKTVGLDFEGMIADIKA---A  226 (459)
Q Consensus       151 ~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~-~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~  226 (459)
                      +|++  |+|++++++++.+  ..+.+||+|++++|+|..|...+ ...|++++.+|+++++++.+|++.+++++++   .
T Consensus       110 ~i~~--~~G~~~ai~~~~~--~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  185 (428)
T 1iay_A          110 RVVM--AGGATGANETIIF--CLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKS  185 (428)
T ss_dssp             SCEE--EEHHHHHHHHHHH--HHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHT
T ss_pred             hEEE--ccChHHHHHHHHH--HhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhc
Confidence            9999  9999999999843  34679999999999999998755 4789999999986445678999999999874   2


Q ss_pred             CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-------CCeEEEE
Q 012647          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-------GMELLVA  299 (459)
Q Consensus       227 ~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~  299 (459)
                      .++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+...       .++++++
T Consensus       186 ~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~viv~  263 (428)
T 1iay_A          186 NIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTP--QFVSIAEILDEQEMTYCNKDLVHIV  263 (428)
T ss_dssp             TCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSS--CCCCHHHHHTSGGGTTSCTTSEEEE
T ss_pred             CCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCC--CccCHHHhccccccccCCCCcEEEE
Confidence            23678888899999999999999999999999999999999999999776431  11123233323       4688999


Q ss_pred             EcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012647          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV  379 (459)
Q Consensus       300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~  379 (459)
                      .||||.||++|+|+||++  +.+++.++.+.    ....  +.+.+.++|.++..+|++.++.   .+++++.+++++++
T Consensus       264 ~s~sK~~g~~Glr~G~~~--~~~~~~~~~~~----~~~~--~~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~~~  332 (428)
T 1iay_A          264 YSLSKDMGLPGFRVGIIY--SFNDDVVNCAR----KMSS--FGLVSTQTQYFLAAMLSDEKFV---DNFLRESAMRLGKR  332 (428)
T ss_dssp             EESTTTSSCGGGCEEEEE--ESCHHHHHHHH----HHHT--TSCCCHHHHHHHHHHTTCHHHH---HHHHHHHHHHHHHH
T ss_pred             ecchhhcCCCCceEEEEE--eCCHHHHHHHH----HHHh--cccCCHHHHHHHHHHhcChHHH---HHHHHHHHHHHHHH
Confidence            999999999999999994  45566444443    2222  2357788899999999886543   34567889999999


Q ss_pred             HHHHHHHHhhccCCCCCcccccCCcceeeecCCC-----------HHHHHHHHhcccEEEcCC--------C--cEEEcc
Q 012647          380 RQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN-----------KAQSDNMTNKWHVYMTKD--------G--RISLAG  438 (459)
Q Consensus       380 ~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~-----------~~~~~~ll~~~gI~v~~g--------g--Ris~~~  438 (459)
                      ++++.+.|+ ++|    +++..+++|+|+|+.+.           .++.++|++++||.+.+|        +  ||+++.
T Consensus       333 ~~~l~~~L~-~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~~  407 (428)
T 1iay_A          333 HKHFTNGLE-VVG----IKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFAN  407 (428)
T ss_dssp             HHHHHHHHH-HTT----CCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSS
T ss_pred             HHHHHHHHH-hcC----CcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEec
Confidence            999999999 876    56777778999988652           134667777679999875        2  999985


Q ss_pred             CChhhHHHHHHHHHHHHhhc
Q 012647          439 LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       439 ~~~e~i~~~~~~l~~~~~~~  458 (459)
                      .+++++++++++|++++++.
T Consensus       408 ~~~e~i~~~~~~l~~~l~~~  427 (428)
T 1iay_A          408 MDDGTVDIALARIRRFVGVE  427 (428)
T ss_dssp             SCHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHhcc
Confidence            59999999999999998764

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=100.00  E-value=7.5e-42  Score=339.49  Aligned_cols=345  Identities=12%  Similarity=0.098  Sum_probs=272.0

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      +++|||+.|.+    ..+ .++.+.+++.+.+.... ..|++.  ..++++++++++...+|..+++++|++  |+|+++
T Consensus        27 ~~~i~~~~~~~----~~~-~~~~v~~a~~~~~~~~~-~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~i~~--~~g~~~   96 (391)
T 3dzz_A           27 EKELPMWIAEM----DFK-IAPEIMASMEEKLKVAA-FGYESV--PAEYYKAVADWEEIEHRARPKEDWCVF--ASGVVP   96 (391)
T ss_dssp             TTCEECCSSCC----SSC-CCHHHHHHHHHHHTTCC-CCCBCC--CHHHHHHHHHHHHHHHSCCCCGGGEEE--ESCHHH
T ss_pred             CCceeccccCC----CCC-CCHHHHHHHHHHHhcCc-CCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEE--CCCHHH
Confidence            48999999976    444 38999999999886543 677655  689999999999887777777899999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeee-cCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~-~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      +++++.+  ..+.+||+|+++.|+|..+...++..|++++.+|++ ++.++.+|++.+++++++  ++++++++++||||
T Consensus        97 a~~~~~~--~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~i~~p~np  172 (391)
T 3dzz_A           97 AISAMVR--QFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLAT--PSVRMMVFCNPHNP  172 (391)
T ss_dssp             HHHHHHH--HHSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTS--TTEEEEEEESSBTT
T ss_pred             HHHHHHH--HhCCCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhc--cCceEEEEECCCCC
Confidence            9999844  346799999999999999999999999999999985 344566999999999974  37888888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      ||.+++.+++++|+++|++||+++|+||+|.++.+.+.  ...++..+... .++++++.||||.+|++|+|+||+++  
T Consensus       173 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~--  248 (391)
T 3dzz_A          173 IGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDE--DITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAII--  248 (391)
T ss_dssp             TTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC--CCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEEC--
T ss_pred             CCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCC--CceehhhcCccccCcEEEEEeChhhccccchhheEEEE--
Confidence            99999999999999999999999999999999887531  11122121111 34789999999999999999999944  


Q ss_pred             CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCccc
Q 012647          321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK-DKSGKDWSF  399 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~g~~~~~~~  399 (459)
                      +++++.+.+......   ..+.+++.+++.++...|.+.      .+.+++.+++++++++++.+.|+ + ++   ++.+
T Consensus       249 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~l~-~~~~---~~~~  315 (391)
T 3dzz_A          249 PNPDLRARAEESFFL---AGIGEPNLLAIPAAIAAYEEG------HDWLRELKQVLRDNFAYAREFLA-KEVP---EVKV  315 (391)
T ss_dssp             CSHHHHHHHHHHHHH---HTCSSCCTTHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HHCT---TSEE
T ss_pred             CCHHHHHHHHHHHHh---hccCCCCHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHH-hhCC---CcEE
Confidence            447755555443221   122355666666666665432      23467889999999999999999 7 42   2678


Q ss_pred             ccCCcceeeecCC-----CH-HHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHHHhhcC
Q 012647          400 ILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYHNVS  459 (459)
Q Consensus       400 ~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~~~~~~  459 (459)
                      ..+++++++|+.+     +. ++.++|++++||.+.+|.          ||+++. +++++++++++|.+++++++
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~l~~~~  390 (391)
T 3dzz_A          316 LDSNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLAC-PKELVIDGMQRLKQGVLNLN  390 (391)
T ss_dssp             CCCCBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCS-CHHHHHHHHHHHHHHHHTCC
T ss_pred             eccCceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHHHhh
Confidence            8889999888643     44 456677656799999862          999996 99999999999999998763

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=1e-41  Score=341.07  Aligned_cols=360  Identities=12%  Similarity=0.118  Sum_probs=280.7

Q ss_pred             cCCCCCCCCCccchhHHHhhh--CCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHH
Q 012647           59 FEGVTMAPPDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTA  136 (459)
Q Consensus        59 ~~~~~~~~~~~i~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia  136 (459)
                      ++++...+++++.++...++.  ..++++|+|+.|.|    ..+ .++.+.+++ +.+.... ..|++..|..++|++++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~----~~~-~~~~v~~a~-~~l~~~~-~~y~~~~g~~~l~~~la   89 (409)
T 2gb3_A           17 SDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQP----DLK-TPEVFFERI-YENKPEV-VYYSHSAGIWELREAFA   89 (409)
T ss_dssp             CHHHHSCCCCTTGGGHHHHHHHHHTTCEEEECSSCCC----CSC-CCTHHHHHH-HHTCCSS-CCCCCTTCCHHHHHHHH
T ss_pred             HHHhhcCCccHHHHHHHHHHHHHhcCCCEEeccCCCC----CCC-CCHHHHHHH-HHHhcCC-CCCCCCCCcHHHHHHHH
Confidence            344445566666666654432  12467999999987    333 378899999 8775433 67888889999999999


Q ss_pred             HHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCH
Q 012647          137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF  216 (459)
Q Consensus       137 ~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~  216 (459)
                      +++...+|..+++++|++  |+||+++++++.+.  .+.+||+|++++|+|..+...++..|++++.+|+++++++.+ +
T Consensus        90 ~~~~~~~g~~~~~~~v~~--~~g~t~a~~~~~~~--~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~  164 (409)
T 2gb3_A           90 SYYKRRQRVDVKPENVLV--TNGGSEAILFSFAV--IANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-P  164 (409)
T ss_dssp             HHHHHTSCCCCCGGGEEE--ESHHHHHHHHHHHH--HCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-C
T ss_pred             HHHHHHhCCCCCHHHEEE--eCCHHHHHHHHHHH--hCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-H
Confidence            999887787778899999  99999999998443  367999999999999999999999999999999853344555 8


Q ss_pred             HHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeE
Q 012647          217 EGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL  296 (459)
Q Consensus       217 e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~  296 (459)
                      +.+++++++   +++++++++||||||.+++.+++++|+++|++||+++|+||+|..+.+++   ...++  +....+++
T Consensus       165 ~~l~~~l~~---~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~---~~~~~--~~~~~~~~  236 (409)
T 2gb3_A          165 QNLESFINE---RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRG---EFASA--LSIESDKV  236 (409)
T ss_dssp             TTGGGGCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS---CCCCG--GGSCCTTE
T ss_pred             HHHHHhhCc---CCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCC---CCCCc--cccCCCCE
Confidence            888888865   67888889999999999999999999999999999999999999987653   11121  11123579


Q ss_pred             EEEEcCCcCcccCCCCcceEEEEeCCh-hHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012647          297 LVAQSYSKNLGLYAERIGAMNVVCSSS-DLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR  375 (459)
Q Consensus       297 i~~~S~SK~~~~~G~RiG~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~  375 (459)
                      ++++||||.+|++|+|+||+++   ++ ++.+.+...    ....+ +++.++|.++..+|+..      .+.+++.+++
T Consensus       237 i~~~s~sK~~g~~G~r~G~~~~---~~~~l~~~l~~~----~~~~~-~~~~~~~~a~~~~l~~~------~~~~~~~~~~  302 (409)
T 2gb3_A          237 VVIDSVSKKFSACGARVGCLIT---RNEELISHAMKL----AQGRL-APPLLEQIGSVGLLNLD------DSFFDFVRET  302 (409)
T ss_dssp             EEEEESTTTTTCGGGCCEEEEC---SCHHHHHHHHHH----HHHSC-CCCHHHHHHHHHHHTCC------HHHHHHHHHH
T ss_pred             EEEecchhccCCccceEEEEEE---CcHHHHHHHHHH----HhccC-CCCHHHHHHHHHHHhcc------HHHHHHHHHH
Confidence            9999999999999999999954   55 755544432    22333 67788888888888653      2346788899


Q ss_pred             HHHHHHHHHHHHhhccCCCCCccc-ccCCcceeeecCC---CH-HHHHHHHhc-----ccEEEcCC-----------C--
Q 012647          376 IKNVRQKLFDSLSAKDKSGKDWSF-ILRQIGMFSFTGL---NK-AQSDNMTNK-----WHVYMTKD-----------G--  432 (459)
Q Consensus       376 ~~~~~~~l~~~L~~~~g~~~~~~~-~~~~~g~f~~~~l---~~-~~~~~ll~~-----~gI~v~~g-----------g--  432 (459)
                      ++++++++.+.|+ ++|    +.+ ..+.+|+|+|+.+   +. ++.++|+++     +||.+.||           +  
T Consensus       303 ~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~i  377 (409)
T 2gb3_A          303 YRERVETVLKKLE-EHG----LKRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEI  377 (409)
T ss_dssp             HHHHHHHHHHHHH-HTT----CCCBCCCSBSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEE
T ss_pred             HHHHHHHHHHHHH-HcC----ceeeeCCCeeEEEEEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEE
Confidence            9999999999999 776    566 6788899988754   33 456677776     59999764           2  


Q ss_pred             cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          433 RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       433 Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      ||+++. +++++++++++|+++++++
T Consensus       378 Ris~~~-~~e~i~~~~~~l~~~l~~~  402 (409)
T 2gb3_A          378 RIACVL-EKDLLSRAIDVLMEGLKMF  402 (409)
T ss_dssp             EEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCC-CHHHHHHHHHHHHHHHHHh
Confidence            999984 9999999999999998764

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=100.00  E-value=6.1e-42  Score=345.09  Aligned_cols=335  Identities=15%  Similarity=0.178  Sum_probs=262.3

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhc----CCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeec
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER----GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~----~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (459)
                      ++++|+|++|.|    .++. ++.|.+++.+.+..    .....|++..|.++||+++++++..  +..+++++|++  |
T Consensus        55 ~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~--~~~~~~~~i~~--t  125 (432)
T 3ei9_A           55 DAQVISLGIGDT----TEPI-PEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYG--GLGIGDDDVFV--S  125 (432)
T ss_dssp             TCCCEECSSCCC----CSCC-CHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHT--TTTCCGGGEEE--E
T ss_pred             CCCeEEccCCCC----CCCC-CHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHc--cCCCCcceEEE--C
Confidence            458999999987    4443 88999999888752    1235788889999999999999863  45566899999  9


Q ss_pred             ccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCC------------CeeeeeeecCCCCCCCHHHHHHHHHc
Q 012647          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARV------------PWSEYRYYDPKTVGLDFEGMIADIKA  225 (459)
Q Consensus       158 ~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~------------~v~~v~~~~~~~~~~d~e~l~~~i~~  225 (459)
                      +|+++++.++   ...+.+||+|++++|+|.+|...++..|.            +++.+|++++.++..|++.     . 
T Consensus       126 ~G~~~al~~l---~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~-  196 (432)
T 3ei9_A          126 DGAKCDISRL---QVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----V-  196 (432)
T ss_dssp             SCHHHHHHHH---HHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----C-
T ss_pred             CChHHHHHHH---HHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-----C-
Confidence            9999999875   34578999999999999999998887774            7888888644455566543     1 


Q ss_pred             CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC
Q 012647          226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (459)
Q Consensus       226 ~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (459)
                        ++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.   ..++..+....+++++++||||.
T Consensus       197 --~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~---~~~~~~~~~~~~~~i~~~S~SK~  271 (432)
T 3ei9_A          197 --GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDN---PRSIFEIPGAEEVAMETASFSNY  271 (432)
T ss_dssp             --CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSC---CSSGGGSTTGGGTEEEEEESHHH
T ss_pred             --CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCC---CCChhhcCCCCCeEEEEecchhc
Confidence              2566777789999999999999999999999999999999999999877532   12222222223578999999999


Q ss_pred             cccCCCCcceEEEEeCChhH--------HHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012647          306 LGLYAERIGAMNVVCSSSDL--------AARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  377 (459)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  377 (459)
                      ||++|+|+||+++   +++.        .+.+..    .....+.+++.++|.++..++.+...     +.+++++++++
T Consensus       272 ~g~~G~r~G~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~  339 (432)
T 3ei9_A          272 AGFTGVRLGWTVI---PKKLLYSDGFPVAKDFNR----IICTCFNGASNISQAGALACLTPEGL-----EAMHKVIGFYK  339 (432)
T ss_dssp             HCTTTTCCEEEEC---CTTCBCTTSCBHHHHHHH----HHHHSCCCSCHHHHHHHHHHSSHHHH-----HHHHHHHHHHH
T ss_pred             cCCcccceEEEEE---ChHHhhcchHHHHHHHHH----HhccccCCCCHHHHHHHHHHHhcccH-----HHHHHHHHHHH
Confidence            9999999999855   5553        333332    22233456788888888888764322     34688899999


Q ss_pred             HHHHHHHHHHhhccCCCCCcccccCCcceeeecCCC----HHHHHHHHhcccEEEcCC--------C--cEEEccCChhh
Q 012647          378 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN----KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAK  443 (459)
Q Consensus       378 ~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~----~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~  443 (459)
                      ++++++.+.|+ ++|    +++..+.+++|+|+.+.    .+++..+++++||.+.||        +  |||++. ++++
T Consensus       340 ~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~-~~e~  413 (432)
T 3ei9_A          340 ENTNIIIDTFT-SLG----YDVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFG-HREN  413 (432)
T ss_dssp             HHHHHHHHHHH-HTT----CCEEECSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHH
T ss_pred             HHHHHHHHHHH-HCC----ceecCCCcceEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecC-CHHH
Confidence            99999999999 876    57777778899998662    356788888789999886        2  999977 9999


Q ss_pred             HHHHHHHHHHHHhh
Q 012647          444 CEYLADAIIDSYHN  457 (459)
Q Consensus       444 i~~~~~~l~~~~~~  457 (459)
                      +++++++|++--+.
T Consensus       414 l~~~l~rl~~~~~~  427 (432)
T 3ei9_A          414 ILEACRRFKQLYKH  427 (432)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999887654

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=100.00  E-value=3.7e-41  Score=336.53  Aligned_cols=364  Identities=18%  Similarity=0.224  Sum_probs=276.6

Q ss_pred             CCCCccchhHHHhhh--CCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCCCCCCcccHHHHHHHHHHHh
Q 012647           65 APPDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLF  140 (459)
Q Consensus        65 ~~~~~i~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~aia~~l~  140 (459)
                      ..++++..+.+....  ..+.++|||+.|.| +..+++  ++.+.+++.+.++..  ... |++..|..++|+++++++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~-~~~~~~--~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~   89 (407)
T 2zc0_A           14 IKGSALADVMKKASELQKKGVKLISLAAGDP-DPELIP--RAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLK   89 (407)
T ss_dssp             CCCCHHHHHHHHHHHHHHSSCCCEECCSCCC-CTTTSC--HHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHhhhcccCCCCceEeCCCCCC-CchhCC--HHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHH
Confidence            344555555544331  22337899999987 333333  688999988887542  125 8888899999999999986


Q ss_pred             cCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHH
Q 012647          141 GADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMI  220 (459)
Q Consensus       141 ~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~  220 (459)
                      ..+|..+++++|++  |+|++++++++.+.  .+.+||+|+++.|+|..+...++..|++++.+|+++ +  ++|++.++
T Consensus        90 ~~~g~~~~~~~v~~--t~g~t~a~~~~~~~--~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~--~~d~~~l~  162 (407)
T 2zc0_A           90 KYDHLEVSPENIVI--TIGGTGALDLLGRV--LIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVDN-D--GMRVDLLE  162 (407)
T ss_dssp             HHSCCCCCGGGEEE--ESHHHHHHHHHHHH--HCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET-T--EECHHHHH
T ss_pred             HhcCCCCCcceEEE--ecCHHHHHHHHHHH--hcCCCCEEEEeCCChHHHHHHHHHcCCEEEEcccCC-C--CCCHHHHH
Confidence            65666666889999  99999999998443  367999999999999999999999999999999853 2  49999999


Q ss_pred             HHHH----cCCCCcEEE-EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012647          221 ADIK----AAPGGSFIL-LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME  295 (459)
Q Consensus       221 ~~i~----~~~~~~~~i-i~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~  295 (459)
                      ++++    +. ++++++ ++++||||||.+++.+++++|+++|++||+++|+||+|..+.+++.  ...++..+ +..++
T Consensus       163 ~~l~~~~~~~-~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~-~~~~~  238 (407)
T 2zc0_A          163 EKIKELKAKG-QKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGG--DIVPLKAL-DNEGR  238 (407)
T ss_dssp             HHHHHHHHTT-CCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCS--SCCCGGGG-CSSCC
T ss_pred             HHHHhhhccc-CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCC--CCCChhhc-CCCCC
Confidence            9997    42 245665 6899999999999999999999999999999999999999876431  11122122 23357


Q ss_pred             EEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHH-HHHHHHHH
Q 012647          296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWK-AEMEMMAG  374 (459)
Q Consensus       296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~-~~~~~~~~  374 (459)
                      +++++||||.++ +|+|+||+++   +++..+.+..    .......+++.++|.++..+|++..+    . +++++.++
T Consensus       239 ~i~~~s~sK~~~-~G~r~G~~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~  306 (407)
T 2zc0_A          239 VIVAGTLSKVLG-TGFRIGWIIA---EGEILKKVLM----QKQPIDFCAPAISQYIALEYLKRGYF----EKYHLEGALL  306 (407)
T ss_dssp             EEEEEESTTTTC-TTSCCEEEEC---CHHHHHHHHH----HHTTTTSSSCHHHHHHHHHHHHTTHH----HHHTTTTHHH
T ss_pred             EEEEcccccccC-CCcceEEEec---CHHHHHHHHH----HHHhhcCCCCHHHHHHHHHHHHcCCc----hHHHHHHHHH
Confidence            899999999999 9999999965   7775444433    32233335678888888888876422    3 44678889


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC----CH-HHHHHHHhcccEEEcCC----------C--cEEEc
Q 012647          375 RIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKD----------G--RISLA  437 (459)
Q Consensus       375 ~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~g----------g--Ris~~  437 (459)
                      +++++++++.+.|+ +.. |+ +.+..+.+|+|+|+.+    +. ++.+.|++++||.+.+|          +  ||+++
T Consensus       307 ~~~~~~~~l~~~L~-~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~  383 (407)
T 2zc0_A          307 GYKEKRDIMLKALE-NHL-PN-AEFTKPIAGMFVMFFLPEGADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFS  383 (407)
T ss_dssp             HHHHHHHHHHHHHH-HHC-TT-SCBCCCSBSSEEEEECSTTCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECS
T ss_pred             HHHHHHHHHHHHHH-HhC-CC-CEEecCCCcEEEEEEcCCCCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeC
Confidence            99999999999998 641 11 5666778888988755    33 45667777669999875          2  99998


Q ss_pred             cCChhhHHHHHHHHHHHHhhc
Q 012647          438 GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       438 ~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      ..+++++++++++|+++++++
T Consensus       384 ~~~~~~i~~~~~~l~~~l~~~  404 (407)
T 2zc0_A          384 RPSKEEIPIGIKKLAKLYKEK  404 (407)
T ss_dssp             SSCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHH
Confidence            767899999999999998764

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=3.6e-42  Score=346.08  Aligned_cols=362  Identities=14%  Similarity=0.157  Sum_probs=276.4

Q ss_pred             CCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCCCCCCcccHHHHHHHHHHHhcCC
Q 012647           66 PPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGAD  143 (459)
Q Consensus        66 ~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~aia~~l~~~~  143 (459)
                      +++++.++.+..   ..+++|||+.|.| +..+++  ++.+.+++.+.++..  ....|++..|.+++|+++++++...+
T Consensus        29 ~~~~~~~~~~~~---~~~~~idl~~g~~-~~~~~~--~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~  102 (425)
T 1vp4_A           29 KSSIIREILKFA---ADKDAISFGGGVP-DPETFP--RKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMY  102 (425)
T ss_dssp             CCCCHHHHTTTT---TSTTCEECCCCSC-CGGGSC--HHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHhc---cCCCceeCCCCCC-CcccCC--HHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhcc
Confidence            444454443322   2468999999987 332322  788999998887542  12578888899999999999986544


Q ss_pred             CCc-cccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHH
Q 012647          144 NSV-LKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIAD  222 (459)
Q Consensus       144 ~~~-~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~  222 (459)
                      |.. +++++|++  |+|++++++++..  ..+.+||+|++++|+|..+...++..|++++.+|+++ +  ++|++.++++
T Consensus       103 g~~~~~~~~v~~--t~G~~~al~~~~~--~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~--~~d~~~l~~~  175 (425)
T 1vp4_A          103 GITGLDEDNLIF--TVGSQQALDLIGK--LFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLED-D--GMDLNVLERK  175 (425)
T ss_dssp             CCCSCCGGGEEE--EEHHHHHHHHHHH--HHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET-T--EECHHHHHHH
T ss_pred             CCCCCCcccEEE--eccHHHHHHHHHH--HhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCC-C--CCCHHHHHHH
Confidence            555 56889999  9999999999843  3367999999999999999999999999999999863 2  4999999999


Q ss_pred             HHcC-----CCCcEEE-EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeE
Q 012647          223 IKAA-----PGGSFIL-LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL  296 (459)
Q Consensus       223 i~~~-----~~~~~~i-i~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~  296 (459)
                      +++.     ..+++++ ++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+ +..+++
T Consensus       176 l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~-~~~~~~  252 (425)
T 1vp4_A          176 LSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGE--TVDPIFKI-GGPERV  252 (425)
T ss_dssp             HHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSC--CCCCHHHH-HCTTTE
T ss_pred             HHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCC--CCcCHHHh-CCCCCE
Confidence            8741     1145665 5899999999999999999999999999999999999999887532  11233332 344678


Q ss_pred             EEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012647          297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI  376 (459)
Q Consensus       297 i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~  376 (459)
                      +++.||||.|+ +|+|+||+++   +++.++.+.....    ....+++.++|.++..+|++..+    .+++++.++++
T Consensus       253 i~~~s~sK~~~-~G~r~G~~~~---~~~~~~~l~~~~~----~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~  320 (425)
T 1vp4_A          253 VLLNTFSKVLA-PGLRIGMVAG---SKEFIRKIVQAKQ----SADLCSPAITHRLAARYLERYDL----LEQLKPTIELY  320 (425)
T ss_dssp             EEEEESTTTTC-GGGCEEEEEC---CHHHHHHHHHHHH----HHHSSCCHHHHHHHHHHHHHSCH----HHHTHHHHHHH
T ss_pred             EEEeccccccc-cccceEEEee---CHHHHHHHHHHhh----hhcCCCCHHHHHHHHHHHhcCCH----HHHHHHHHHHH
Confidence            99999999999 9999999965   7775555543222    22235677888888877765322    34578889999


Q ss_pred             HHHHHHHHHHHhhccCCCC--CcccccCCcceeeecCCC-----HHHHHHHHhcccEEEcCC----------C--cEEEc
Q 012647          377 KNVRQKLFDSLSAKDKSGK--DWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD----------G--RISLA  437 (459)
Q Consensus       377 ~~~~~~l~~~L~~~~g~~~--~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g----------g--Ris~~  437 (459)
                      +++++++.+.|+ +. .|.  ++.+..+.+|+|+|+.+.     .++++.|+++ ||.+.||          +  |||++
T Consensus       321 ~~~~~~l~~~L~-~~-~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~  397 (425)
T 1vp4_A          321 RRKRTVMLNALE-EY-FSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKRK-KVFYVPGRVFKVYDEPSPSMRLSFC  397 (425)
T ss_dssp             HHHHHHHHHHHH-HH-STTSTTCEECCCSBSSEEEEECCTTCCTTTTHHHHHHH-TEECEEGGGGCTTCCCCSEEEEECS
T ss_pred             HHHHHHHHHHHH-Hh-CCCCCceEEecCCccEEEEEEcCCCCCHHHHHHHHHHC-CCEEECchhhcCCCCCCCeEEEEeC
Confidence            999999999998 75 111  267777888999987552     3457777776 9999874          2  99998


Q ss_pred             cCChhhHHHHHHHHHHHHhhc
Q 012647          438 GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       438 ~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      ..+++++++++++|+++++++
T Consensus       398 ~~~~e~i~~~l~~l~~~l~~~  418 (425)
T 1vp4_A          398 LPPDEKIVEGIKRLREVVLEY  418 (425)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHH
Confidence            767899999999999988753

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=100.00  E-value=5.2e-42  Score=345.08  Aligned_cols=349  Identities=14%  Similarity=0.108  Sum_probs=261.8

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHH--HHHhhcC--CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeec
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAE--NLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~--~~~~~~~--~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (459)
                      .+.+|||+.|.| +...+| .++.+.+++  .+.+...  ...+|++..|.++||++|++++.      +++++|++  |
T Consensus        32 ~~~~i~~~~G~p-~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~------~~~~~i~~--t  101 (427)
T 3ppl_A           32 KNLKLDLTRGKP-SSEQLD-FADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLG------VPVEQVLA--G  101 (427)
T ss_dssp             TCCCEECCCCSC-CHHHHH-TTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHT------SCGGGEEE--C
T ss_pred             CCceEecCCCCC-ChHHCC-CcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhC------CCcceEEE--e
Confidence            357899999998 221111 133566666  5544321  24789999999999999999983      34789999  9


Q ss_pred             ccchhHH--HHHHHHHHHhC--C----------CCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHH
Q 012647          158 LSGTGSL--RLAAALIERYF--P----------GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI  223 (459)
Q Consensus       158 ~ggt~a~--~l~~~~~~~~~--~----------gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i  223 (459)
                      +|+++++  +++...+  +.  |          ||+|++++|+|..|...++.+|++++.+|+++ +  ++|++.+++++
T Consensus       102 ~G~~~al~~~~~~~~l--~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v~~~~-~--g~d~~~l~~~l  176 (427)
T 3ppl_A          102 DASSLNIMFDVISWSY--IFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVPMNE-D--GPDMDAVEELV  176 (427)
T ss_dssp             SSCHHHHHHHHHHHHH--HHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEEEEET-T--EECHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHH--hccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEeCCCC-C--CCCHHHHHHHH
Confidence            9999999  4663333  44  5          89999999999999999999999999999963 2  49999999999


Q ss_pred             HcCCCCcEEEE-eCCCCCCCCCCCCHHHHHHHHHHH-HhcCCeeEEeccCCCCCCCCCCCChhHHHHHH---hcCCeEEE
Q 012647          224 KAAPGGSFILL-HGCAHNPTGIDPTPEQWEKIADVI-QEKNHIPFFDVAYQGFASGSLDNDASSVRLFA---TRGMELLV  298 (459)
Q Consensus       224 ~~~~~~~~~ii-~~~p~NPTG~~~s~~~l~~i~~l~-~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~---~~~~~~i~  298 (459)
                      +.  +++++++ +++||||||.+++.+++++|+++| ++||++||+||+|.++.+++......++..+.   +..+++++
T Consensus       177 ~~--~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  254 (427)
T 3ppl_A          177 KN--PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWA  254 (427)
T ss_dssp             TS--TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEE
T ss_pred             hc--CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEE
Confidence            53  3566666 558999999999999999999999 99999999999999976653211121222221   24578999


Q ss_pred             EEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012647          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  378 (459)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  378 (459)
                      ++||||. +++|+|+||+++   ++++++.+..    .......+++.+.|.++..+|.+.+   .|.+++++.++.+++
T Consensus       255 ~~S~SK~-~~~G~r~G~~~~---~~~l~~~~~~----~~~~~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~~~~~~~~  323 (427)
T 3ppl_A          255 FTSTSKI-TLAGAGVSFFLT---SAENRKWYTG----HAGIRGIGPNKVNQLAHARYFGDAE---GVRAVMRKHAASLAP  323 (427)
T ss_dssp             EEESTTT-SCTTSSCEEEEC---CHHHHHHHHH----HHHHHCSCCCHHHHHHHHHHHCSHH---HHHHHHHHHHHHHHH
T ss_pred             Eechhhc-cCcCccEEEEEc---CHHHHHHHHH----HhhcccCCCCHHHHHHHHHHHhChh---hHHHHHHHHHHHHHH
Confidence            9999999 679999999865   7775544433    3333345788999999999998732   124567888888888


Q ss_pred             HHHHHHHHHhhccCCCCCcccccCCcceeeecCCC---HHHHHHHHhcccEEEcCCC--------------cEEEccCCh
Q 012647          379 VRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKDG--------------RISLAGLSL  441 (459)
Q Consensus       379 ~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~gg--------------Ris~~~~~~  441 (459)
                      +++.+.+.|.+.++.-+.+.+..|++|+|+|+.+.   .+.+..+++++||.++|||              |||++..++
T Consensus       324 ~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~  403 (427)
T 3ppl_A          324 KFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPGTASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLPPV  403 (427)
T ss_dssp             HHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTTCHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCH
T ss_pred             HHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcchHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCCCH
Confidence            88888888862221001256677889999998663   4444555566799999831              999987788


Q ss_pred             hhHHHHHHHHHHHHhhc
Q 012647          442 AKCEYLADAIIDSYHNV  458 (459)
Q Consensus       442 e~i~~~~~~l~~~~~~~  458 (459)
                      +++++++++|.++++++
T Consensus       404 ~~i~~~~~~l~~~l~~~  420 (427)
T 3ppl_A          404 EELEVAMDGVATCVLLA  420 (427)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998764

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=100.00  E-value=1.5e-41  Score=337.20  Aligned_cols=341  Identities=12%  Similarity=0.079  Sum_probs=268.7

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      ++++|+|+.|.+    ..++ ++.+.+++.+.+.... +.|++  +..++++++++++...++..+++++|++  |+|++
T Consensus        31 ~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~-~~y~~--~~~~~~~~l~~~l~~~~g~~~~~~~v~~--~~g~~  100 (391)
T 4dq6_A           31 TNDLLPMWVADM----DFKA-APCIIDSLKNRLEQEI-YGYTT--RPDSYNESIVNWLYRRHNWKIKSEWLIY--SPGVI  100 (391)
T ss_dssp             CSCSEECCSSSC----SSCC-CHHHHHHHHHHHTTCC-CCCBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESCHH
T ss_pred             CCCceeccccCC----CCCC-CHHHHHHHHHHHhCCC-CCCCC--CCHHHHHHHHHHHHHHhCCCCcHHHeEE--cCChH
Confidence            468999999976    4443 8999999999886543 56754  5689999999998877776677899999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeee--cCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY--DPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~--~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~  239 (459)
                      ++++++.+  ..+.+||+|+++.|+|..+...++..|++++.+|++  ++.++.+|++++++++++    ++++++++||
T Consensus       101 ~a~~~~~~--~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~----~~~v~i~~p~  174 (391)
T 4dq6_A          101 PAISLLIN--ELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD----VKLFILCNPH  174 (391)
T ss_dssp             HHHHHHHH--HHSCTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT----EEEEEEESSB
T ss_pred             HHHHHHHH--HhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc----CCEEEEECCC
Confidence            99999843  346799999999999999999999999999999986  345577999999999874    7788889999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH-hcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012647          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRGMELLVAQSYSKNLGLYAERIGAMNV  318 (459)
Q Consensus       240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (459)
                      ||||.+++.+++++|+++|++||+++|+||+|.++.+++..  ..++..+. +..++++++.||||.+|++|+|+||++ 
T Consensus       175 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~-  251 (391)
T 4dq6_A          175 NPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHK--HIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVV-  251 (391)
T ss_dssp             TTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCC--CCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEE-
T ss_pred             CCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCC--ccCHHHcCccccCcEEEEEechhhccCcccceEEEE-
Confidence            99999999999999999999999999999999998875321  11221111 113578999999999999999999994 


Q ss_pred             EeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCc
Q 012647          319 VCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK-DKSGKDW  397 (459)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~g~~~~~  397 (459)
                       +++++..+.+......   ..+.+++.+++.++...|.+.      .+.+++.+++++++++++.+.|+ + ++   ++
T Consensus       252 -~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~l~-~~~~---~~  317 (391)
T 4dq6_A          252 -LPDEKDYKLLDDAFTR---IDIKRNNCFSLVATEASYNNG------ESWLESFLEYLESNIDFAIKYIN-ENMP---KL  317 (391)
T ss_dssp             -CCSHHHHHHHHHHHHH---TTCCCCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HHCT---TS
T ss_pred             -eCCHHHHHHHHHHHHh---hcCCCCCHHHHHHHHHHHhch------HHHHHHHHHHHHHHHHHHHHHHH-hhCC---CC
Confidence             4445755555443222   223467777777776666532      23367888999999999999998 7 42   26


Q ss_pred             ccccCCcceeeecCC-----CH-HHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHHHHh
Q 012647          398 SFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       398 ~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~~~~  456 (459)
                      .+..+++++++|+.+     +. ++.++|++++||.+.||        +  ||+++. +++++++++++|+++++
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~l~  391 (391)
T 4dq6_A          318 KVRKPEGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLAC-PRSMLEEALIRIKNAIN  391 (391)
T ss_dssp             EECCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECCS-CHHHHHHHHHHHHHHHC
T ss_pred             EecCCCccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEcC-CHHHHHHHHHHHHHHhC
Confidence            788899999987644     33 45667777669999875        2  999996 89999999999998763

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=100.00  E-value=1.1e-41  Score=337.50  Aligned_cols=333  Identities=17%  Similarity=0.142  Sum_probs=263.2

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      ++.|||+.|.|    ..+ .++.+.+++.+.+..  ...|++..|.+++|+++++++...      +++|++  |+||++
T Consensus        25 ~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~~~~------~~~v~~--~~g~~~   89 (381)
T 1v2d_A           25 LGAVNLGQGFP----SNP-PPPFLLEAVRRALGR--QDQYAPPAGLPALREALAEEFAVE------PESVVV--TSGATE   89 (381)
T ss_dssp             HTCEECCCCSC----SSC-CCHHHHHHHHHHTTT--SCSCCCTTCCHHHHHHHHHHHTSC------GGGEEE--ESSHHH
T ss_pred             CCeEEecCCCC----CCC-CCHHHHHHHHHHHHH--hcCCCCCCCCHHHHHHHHHhcCCC------hhhEEE--cCChHH
Confidence            46899999987    333 378999999988865  367988889999999999996432      678999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeec-CCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD-PKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~-~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      +++++.+.  .+.+||+|++++|+|..+...++..|++++.+|++. ++++.+|++.+++++++   +++++++++||||
T Consensus        90 a~~~~~~~--~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~np  164 (381)
T 1v2d_A           90 ALYVLLQS--LVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTP---RTRALLLNTPMNP  164 (381)
T ss_dssp             HHHHHHHH--HCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCT---TEEEEEEESSCTT
T ss_pred             HHHHHHHH--hCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCc---CCEEEEECCCCCC
Confidence            99998443  367999999999999999999999999999999851 13478999999998864   6788888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+++.+++++|+++|++||+++|+||+|.++.++.   ...++..+  ..++++++.|+||.+|++|+|+||+++   
T Consensus       165 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~---~~~~~~~~--~~~~~~~~~s~sK~~~~~G~r~G~~~~---  236 (381)
T 1v2d_A          165 TGLVFGERELEAIARLARAHDLFLISDEVYDELYYGE---RPRRLREF--APERTFTVGSAGKRLEATGYRVGWIVG---  236 (381)
T ss_dssp             TCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS---CCCCHHHH--CTTTEEEEEEHHHHTTCGGGCCEEEEC---
T ss_pred             CCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCC---CCCCHHHh--cCCCEEEEeechhhcCCcccceEEEEe---
Confidence            9999999999999999999999999999999887631   11122222  446899999999999999999999965   


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  401 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  401 (459)
                      +++.++.+.....    ....+++.++|.++...|+...    +.+++++.+++++++++++.+.|+ +.|    +++..
T Consensus       237 ~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~  303 (381)
T 1v2d_A          237 PKEFMPRLAGMRQ----WTSFSAPTPLQAGVAEALKLAR----REGFYEALREGYRRRRDLLAGGLR-AMG----LRVYV  303 (381)
T ss_dssp             CTTTHHHHHHHHH----HHTSSCCHHHHHHHHHHHHHHH----HTTHHHHHHHHHHHHHHHHHHHHH-HTT----CCEEC
T ss_pred             CHHHHHHHHHHHh----hcccCCCcHHHHHHHHHHhCcc----cHHHHHHHHHHHHHHHHHHHHHHH-HCC----CEecC
Confidence            7775555543221    2233566777777766665321    123467889999999999999999 776    57777


Q ss_pred             CCcceeeecCCCH-HHHHHHHhcccEEEcCC----------C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          402 RQIGMFSFTGLNK-AQSDNMTNKWHVYMTKD----------G--RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       402 ~~~g~f~~~~l~~-~~~~~ll~~~gI~v~~g----------g--Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      +++|+|+|+.+.. + +.++++++||.+.+|          +  ||+++. +++++++++++|.+++++.
T Consensus       304 ~~~~~~~~~~~~~~~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~-~~~~i~~~~~~l~~~l~~~  371 (381)
T 1v2d_A          304 PEGTYFLMAELPGWD-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRVVNSP  371 (381)
T ss_dssp             CSBSSEEEEECTTCC-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS-CHHHHHHHHHHHHHHC---
T ss_pred             CCcceEEEEecChHh-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHhhc
Confidence            8888998886532 3 666777789999874          2  999998 9999999999999988754

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=100.00  E-value=2.6e-41  Score=336.78  Aligned_cols=344  Identities=12%  Similarity=0.103  Sum_probs=267.4

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      +++|+|+.|.+    +.+ .++.+.+++.+.+... ...|++.  ..++|+++++++...+|..+++++|++  |+|+++
T Consensus        31 ~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~--t~g~~~  100 (399)
T 1c7n_A           31 NEVVPLSVADM----EFK-NPPELIEGLKKYLDET-VLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIIN--TAGVVP  100 (399)
T ss_dssp             TTCCCCCSSSC----SSC-CCHHHHHHHHHHHHHC-CCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEE--ESSHHH
T ss_pred             CCceeeeecCC----CCC-CCHHHHHHHHHHHhcC-CCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEE--cCCHHH
Confidence            47899999986    344 3789999999888653 3678654  899999999998765565566889999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCC-CCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK-TVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~-~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      +++++.+  ..+.+||+|+++.|+|..+...++..|++++.+|+++++ ++.+|++.++++++.  ++++++++++||||
T Consensus       101 a~~~~~~--~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~--~~~~~v~~~~~~np  176 (399)
T 1c7n_A          101 AVFNAVR--EFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD--KNNKALLFCSPHNP  176 (399)
T ss_dssp             HHHHHHH--HHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC--TTEEEEEEESSBTT
T ss_pred             HHHHHHH--HhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhcc--CCCcEEEEcCCCCC
Confidence            9999844  336789999999999999999999999999999985222 456999999999974  26788888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      ||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+.. ..++++++.||||.+|++|+|+||++  +
T Consensus       177 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~--~  252 (399)
T 1c7n_A          177 VGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGY--EHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNII--I  252 (399)
T ss_dssp             TTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTC--CCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEE--C
T ss_pred             CCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CcccHHHcCccccCcEEEEEeChhhccccchheEEEE--E
Confidence            99999999999999999999999999999999887532  1112211111 13578999999999999999999994  4


Q ss_pred             CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCccc
Q 012647          321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK-DKSGKDWSF  399 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~g~~~~~~~  399 (459)
                      ++++.++.+......   ..+.+++.++|.++..+|++.      .+.+++.+++++++++++.+.|+ + ++   ++.+
T Consensus       253 ~~~~~~~~l~~~~~~---~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~~~---~~~~  319 (399)
T 1c7n_A          253 KNPDIRERFTKSRDA---TSGMPFTTLGYKACEICYKEC------GKWLDGCIKVIDKNQRIVKDFFE-VNHP---EIKA  319 (399)
T ss_dssp             CCHHHHHHHHHHHHH---TTCCCCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HHCT---TSBC
T ss_pred             CCHHHHHHHHHHHhh---cccCCCCHHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHHHHHHH-hhCC---CCeE
Confidence            446655555443221   223356778888777666532      23467888999999999999998 7 52   1677


Q ss_pred             ccCCcceeeecCC-----CH-HHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          400 ILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       400 ~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      ..+++++++|+.+     +. ++.+.|++++||.+.||        +  ||+++. +++++++++++|.++++++
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~~  393 (399)
T 1c7n_A          320 PLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSVIQESLERLNKALKDL  393 (399)
T ss_dssp             CCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc-CHHHHHHHHHHHHHHHHHH
Confidence            7888899888644     33 45667765679999875        2  999998 6899999999999998764

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=100.00  E-value=2.7e-41  Score=339.37  Aligned_cols=356  Identities=16%  Similarity=0.100  Sum_probs=263.3

Q ss_pred             cchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHh--hcC-CCCCCCCCcccHHHHHHHHHHHhcCCCCc
Q 012647           70 ILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML--ERG-ENKEYLPIEGLAAFNKVTAELLFGADNSV  146 (459)
Q Consensus        70 i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~--~~~-~~~~Y~~~~g~~~lr~aia~~l~~~~~~~  146 (459)
                      +......+.+.  ..+|+|+.|.| +...+++ ++.+.+++.+.+  ... ...+|++..|.++||+++++++.      
T Consensus        21 ~~~~~~~l~~~--~~~i~l~~g~~-~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~------   90 (422)
T 3d6k_A           21 VTAKYAELKAK--NLSLDLTRGKP-SAEQLDL-SNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALG------   90 (422)
T ss_dssp             HHHHHHHHHHT--TCCEECCCCSC-CHHHHHT-TGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHT------
T ss_pred             HHHHHHHHhcc--CCeEeCCCCCC-ChhhCCC-cHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhC------
Confidence            33334444443  35899999998 2111343 567777766542  121 24689999999999999999983      


Q ss_pred             cccCceEEeecccchhHH--HHHHHHHHHhCC------------CCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCC
Q 012647          147 LKEQRVATVQGLSGTGSL--RLAAALIERYFP------------GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTV  212 (459)
Q Consensus       147 ~~~~~i~~~~t~ggt~a~--~l~~~~~~~~~~------------gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~  212 (459)
                      +++++|++  |+|+++++  .++...+  ..+            +|+|++++|+|..|...++..|++++.+|+++ +  
T Consensus        91 ~~~~~i~~--t~G~~~al~l~~~~~~l--~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~--  163 (422)
T 3d6k_A           91 LPADLVVA--QDGSSLNIMFDLISWSY--TWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTD-E--  163 (422)
T ss_dssp             CCGGGEEE--CSSCHHHHHHHHHHHHH--HHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEET-T--
T ss_pred             CChhHEEE--ecchHHHHHHHHHHHHh--cCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCCC-C--
Confidence            34789999  99999997  5553332  234            34799999999999999999999999999963 2  


Q ss_pred             CCCHHHHHHHHHcCCCCcEEEE-eCCCCCCCCCCCCHHHHHHHHHHHH-hcCCeeEEeccCCC--CCCCCCCCChhHHHH
Q 012647          213 GLDFEGMIADIKAAPGGSFILL-HGCAHNPTGIDPTPEQWEKIADVIQ-EKNHIPFFDVAYQG--FASGSLDNDASSVRL  288 (459)
Q Consensus       213 ~~d~e~l~~~i~~~~~~~~~ii-~~~p~NPTG~~~s~~~l~~i~~l~~-~~~~~ii~Deay~~--~~~~~~~~~~~~~~~  288 (459)
                      ++|++.+++++++  .++++++ +++||||||.+++.+++++|+++|+ +||++||+||+|..  +.+++  ....++..
T Consensus       164 g~d~~~l~~~l~~--~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~--~~~~~~~~  239 (422)
T 3d6k_A          164 GPDMGVVRELVKD--PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEF--PIVHNVIE  239 (422)
T ss_dssp             EECHHHHHHHHTS--TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCC--CCCCCHHH
T ss_pred             CCCHHHHHHHHhc--CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCC--CCCcChhh
Confidence            4999999999974  2566666 7999999999999999999999999 99999999999986  44321  11223322


Q ss_pred             H---HhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHH
Q 012647          289 F---ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEW  365 (459)
Q Consensus       289 ~---~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~  365 (459)
                      +   .+..+++++++||||. +++|+|+||+++   ++++++.+..    .......+++.++|.++..+|++.+   .|
T Consensus       240 ~~~~~~~~~~~i~~~S~SK~-~~~GlriG~~~~---~~~l~~~l~~----~~~~~~~~~~~~~q~a~~~~l~~~~---~~  308 (422)
T 3d6k_A          240 FAQAAGNPNRFWFMSSTSKI-THAGSGVSFFAS---SKENIEWYAS----HANVRGIGPNKLNQLAHAQFFGDVA---GL  308 (422)
T ss_dssp             HHHHTTCTTCEEEEEESTTT-SCTTSSCEEEEC---CHHHHHHHHH----HHHHHCSCCCHHHHHHHHHHHCSHH---HH
T ss_pred             HhhccCCCCcEEEEcChhhh-cCcccceEEEEe---CHHHHHHHHH----HHHhhcCCCCHHHHHHHHHHHhCcc---hH
Confidence            2   2345689999999999 679999999966   7775555443    3223344678899999999998732   23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCcccccCCcceeeecCCC---HHHHHHHHhcccEEEcCC----------
Q 012647          366 KAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFILRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKD----------  431 (459)
Q Consensus       366 ~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~g----------  431 (459)
                      .+++++.++.++++++.+.+.|. +. +--+.+.+..|++|+|+|+.+.   .+.+..+++++||.+.||          
T Consensus       309 ~~~~~~~~~~~~~~~~~l~~~L~-~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gV~v~~~g~~f~~~~~~  387 (422)
T 3d6k_A          309 KAHMLKHAASLAPKFERVLEILD-SRLSEYGVAKWTSPTGGYFISVDVVPGTASRVVELAKEAGIALTGAGSSFPLHNDP  387 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHHGGGTCEEECCCSBSSCEEEEESTTCHHHHHHHHHHTTEECCCTTTTSGGGCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HhcCcCCceEEeCCCcceEEEEECCCCCHHHHHHHHHHCCeEEEcCccccCCCCCC
Confidence            56678889999999998888887 42 1001145567889999998653   555566666789999883          


Q ss_pred             --C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          432 --G--RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       432 --g--Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                        +  |||++..+++++++++++|+++++++
T Consensus       388 ~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~  418 (422)
T 3d6k_A          388 NNENIRLAPSLPPVAELEVAMDGFATCVLMA  418 (422)
T ss_dssp             TSCEEEECCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence              2  99998558999999999999988763

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=100.00  E-value=2.7e-40  Score=324.01  Aligned_cols=326  Identities=17%  Similarity=0.206  Sum_probs=262.3

Q ss_pred             CCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        81 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      .++++|+|+.|.+    ..+ .++.+.+++.+.+..  ...| |..+.+++|+++++++..      ++++|++  |+|+
T Consensus        14 ~~~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~--~~~y-~~~~~~~l~~~la~~~~~------~~~~i~~--~~g~   77 (354)
T 3ly1_A           14 STDNPIRINFNEN----PLG-MSPKAQAAARDAVVK--ANRY-AKNEILMLGNKLAAHHQV------EAPSILL--TAGS   77 (354)
T ss_dssp             CSSSCEECSSCCC----SSC-CCHHHHHHHHHTGGG--TTSC-CHHHHHHHHHHHHHHTTS------CGGGEEE--ESHH
T ss_pred             CCCceEEccCCCC----CCC-CCHHHHHHHHHHHhh--CcCC-CCCchHHHHHHHHHHhCC------ChHHEEE--eCCh
Confidence            3568999999986    444 389999999998864  3677 667899999999999742      3789999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      +++++++.+  ..+.+||+|+++.|+|..+...++..|++++.+|++  .++++|++.+++++++. ++++++++++|||
T Consensus        78 ~~a~~~~~~--~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~l~~~-~~~~~v~l~~p~n  152 (354)
T 3ly1_A           78 SEGIRAAIE--AYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKML--DNWAFDIEGLKAAVAAY-SGPSIVYLVNPNN  152 (354)
T ss_dssp             HHHHHHHHH--HHCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECCC--TTSCCCHHHHHHHHHTC-SSCEEEEEESSCT
T ss_pred             HHHHHHHHH--HHhCCCCeEEECCCCchHHHHHHHHcCCEEEEecCC--CCCCCCHHHHHHHhccC-CCCCEEEEeCCCC
Confidence            999999843  336799999999999999999999999999999984  35899999999999831 2678888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC-CeEEEEEcCCcCcccCCCCcceEEEE
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG-MELLVAQSYSKNLGLYAERIGAMNVV  319 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (459)
                      |||.+++.+++++|+++| +||+++|+||+|.++.+++.   ..+........ +++++++||||.+|++|+|+||+++ 
T Consensus       153 ptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-  227 (354)
T 3ly1_A          153 PTGTITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPR---FRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVA-  227 (354)
T ss_dssp             TTCCCCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTT---CCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEEC-
T ss_pred             CcCCCcCHHHHHHHHHhC-CCCeEEEEeccHHHhccccc---cCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeec-
Confidence            999999999999999999 89999999999998886532   11222333444 7899999999999999999999865 


Q ss_pred             eCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccc
Q 012647          320 CSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF  399 (459)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~  399 (459)
                        +++    +.+.+......  .+++.+++.++...|++.       +.+++.+++++++++++.+.|+ ++|    +.+
T Consensus       228 --~~~----~~~~~~~~~~~--~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~-~~~----~~~  287 (354)
T 3ly1_A          228 --HPT----VIALMGRYVAG--EKINFSGVDAALASMNDS-------AFITYSKKSNDVSRQILLKALE-DLK----LPY  287 (354)
T ss_dssp             --CHH----HHHHHGGGTTC--SCCCHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHHHHHH-HHT----CCB
T ss_pred             --CHH----HHHHHHHhcCC--CCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHH-HCC----CeE
Confidence              777    45555544433  377888888888888865       2367888999999999999999 876    466


Q ss_pred             ccCCcceeeecCC--CHH-HHHHHHhcccEEEcCC------C--cEEEccCChhhHHHHHHHHHHHHhh
Q 012647          400 ILRQIGMFSFTGL--NKA-QSDNMTNKWHVYMTKD------G--RISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       400 ~~~~~g~f~~~~l--~~~-~~~~ll~~~gI~v~~g------g--Ris~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                      .++ .|.|+|+.+  +.+ +.+.|.+ +||.+. |      +  |||++  +++++++++++|++++++
T Consensus       288 ~~~-~~~~~~~~~~~~~~~~~~~l~~-~gi~v~-g~~~~~~~~iRis~~--~~~~i~~~~~~l~~~l~~  351 (354)
T 3ly1_A          288 LPS-EGNFVFHQLVVPLKDYQTHMAD-AGVLIG-RAFPPADNWCRISLG--TPQEMQWVADTMREFRKK  351 (354)
T ss_dssp             CCC-CSSEEEEECSSCHHHHHHHHHH-TTEECC-CCCTTCTTEEEEECC--CHHHHHHHHHHHHHHHHT
T ss_pred             CCC-CceEEEEECCCCHHHHHHHHHH-CCEEEe-ecCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence            555 456788766  344 4555555 699988 3      2  99987  789999999999999875

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=100.00  E-value=6.7e-41  Score=336.38  Aligned_cols=344  Identities=14%  Similarity=0.073  Sum_probs=272.2

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +++.|+|++|.+    .++ .+|.|.+++.+.++... +.|.+.  ..++++++++++...++..+++++|++  |+|++
T Consensus        60 g~~~i~~~~~~~----~~~-~~~~v~~a~~~~~~~~~-~~y~~~--~~~l~~~l~~~l~~~~g~~~~~~~v~~--~~g~~  129 (421)
T 3l8a_A           60 NPELLQMWVADM----DFL-PVPEIKEAIINYGREHI-FGYNYF--NDDLYQAVIDWERKEHDYAVVKEDILF--IDGVV  129 (421)
T ss_dssp             CTTCEECCSSCC----CSC-CCHHHHHHHHHHHHHCC-SSCBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEE--ESCHH
T ss_pred             CCCeeecccCCC----CCC-CCHHHHHHHHHHHhcCC-cCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEE--cCCHH
Confidence            468999999976    444 38999999998886543 667654  379999999999887777777899999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeee-cCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~-~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      ++++++.+.  .+.+||+|+++.|+|..+...++..|.+++.+|+. .+.++.+|++.+++++++  ++++++++++|||
T Consensus       130 ea~~~a~~~--~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~--~~~~~vil~~p~n  205 (421)
T 3l8a_A          130 PAISIALQA--FSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIID--NNVKIYLLCSPHN  205 (421)
T ss_dssp             HHHHHHHHH--HSCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHH--TTEEEEEEESSBT
T ss_pred             HHHHHHHHH--hcCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhc--cCCeEEEECCCCC
Confidence            999998444  36799999999999999999999999999999986 455677999999999984  2788889999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH-hcCCeEEEEEcCCcCcccCCCCcceEEEE
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (459)
                      |||.+++++++++|+++|++||+++|+||+|.++.+.+..  ..++..+. +..++++++.|+||.+|++|+|+||+++ 
T Consensus       206 ptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~-  282 (421)
T 3l8a_A          206 PGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNT--HHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAII-  282 (421)
T ss_dssp             TTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC--CCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEEC-
T ss_pred             CCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC--CccHHHcCchhcCcEEEEEeChhhccCchhheEeEEc-
Confidence            9999999999999999999999999999999999875421  11221111 1235789999999999999999999954 


Q ss_pred             eCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccc
Q 012647          320 CSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF  399 (459)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~  399 (459)
                       +++++.+.+......   ..+.+++.+++.++...++..      .+.+++.+++++++++++.+.|+ +++   ++.+
T Consensus       283 -~~~~l~~~~~~~~~~---~~~~~~n~~~~~a~~aal~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~~---~i~~  348 (421)
T 3l8a_A          283 -QNESLRRKFQYRQLA---NNQHEVPTVGMIATQAAFQYG------KPWLEELKTVIEGNIKLVIKELE-AKT---KIKV  348 (421)
T ss_dssp             -CSHHHHHHHHHHHHH---TTCSCCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HHC---SCEE
T ss_pred             -CCHHHHHHHHHHHHh---cccCCCCHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHH-hCC---CceE
Confidence             447755555443322   234467777777776666532      23367888999999999999999 762   2688


Q ss_pred             ccCCcceeeecCC-----C-HHHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHHHHhh
Q 012647          400 ILRQIGMFSFTGL-----N-KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       400 ~~~~~g~f~~~~l-----~-~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                      ..++++++.|+.+     + .++.+.|++++||.+.+|        +  ||+++. +++++++++++|.+++++
T Consensus       349 ~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~l~~  421 (421)
T 3l8a_A          349 MEPEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVAT-PKNTVQEALSRIISVFGK  421 (421)
T ss_dssp             ECCSBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHC--
T ss_pred             eCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHhC
Confidence            8899999988754     2 356778877789999875        2  999997 999999999999998753

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=100.00  E-value=1.1e-40  Score=334.99  Aligned_cols=348  Identities=14%  Similarity=0.085  Sum_probs=261.4

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHH--HHhhcC-CCCCC-CCCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAEN--LMLERG-ENKEY-LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~--~~~~~~-~~~~Y-~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      .++|||+.|.| +...+| .++.+.+++.  +.+..+ ....| .+..|.++||+++++++.      +++++|++  |+
T Consensus        25 ~~~i~l~~g~p-~~~~~~-~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~~------~~~~~i~~--t~   94 (423)
T 3ez1_A           25 GLNLNMQRGQP-ADADFD-LSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYLD------VKAENVLV--WN   94 (423)
T ss_dssp             TCCEESCCCCC-CHHHHH-TTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHTT------SCGGGEEE--CS
T ss_pred             CceEecCCCCC-ChHhCC-CcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHhC------CChhhEEE--eC
Confidence            47899999998 211133 3667888775  544322 23689 888999999999999973      33789999  99


Q ss_pred             cchhHHH--HHHHHHHHhC--C---------CCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc
Q 012647          159 SGTGSLR--LAAALIERYF--P---------GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA  225 (459)
Q Consensus       159 ggt~a~~--l~~~~~~~~~--~---------gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~  225 (459)
                      |++++++  ++.  ...+.  +         ||+|++++|+|..|...++..|++++.+|++++   ++|++.++++++.
T Consensus        95 G~~~al~~~~~~--~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~  169 (423)
T 3ez1_A           95 NSSLELQGLVLT--FALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSD---GPDVDAVERLAGT  169 (423)
T ss_dssp             SCHHHHHHHHHH--HHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT---EECHHHHHHHHHS
T ss_pred             CcHHHHHHHHHH--HHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCCCC---CCCHHHHHHHHhh
Confidence            9999997  663  33355  7         599999999999999999999999999999632   5999999999963


Q ss_pred             CCCCcEEEE-eCCCCCCCCCCCCHHHHHHHHHHH-HhcCCeeEEeccCCCCCCCC-CCCChhHHHHH---HhcCCeEEEE
Q 012647          226 APGGSFILL-HGCAHNPTGIDPTPEQWEKIADVI-QEKNHIPFFDVAYQGFASGS-LDNDASSVRLF---ATRGMELLVA  299 (459)
Q Consensus       226 ~~~~~~~ii-~~~p~NPTG~~~s~~~l~~i~~l~-~~~~~~ii~Deay~~~~~~~-~~~~~~~~~~~---~~~~~~~i~~  299 (459)
                      . +++++++ +++||||||.+++.+++++|+++| ++||+++|+||+|..+.+.+ ......++..+   .+..++++++
T Consensus       170 ~-~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  248 (423)
T 3ez1_A          170 D-PSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVF  248 (423)
T ss_dssp             C-TTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEE
T ss_pred             C-CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEE
Confidence            1 3666665 679999999999999999999999 99999999999999655432 11111122222   2355789999


Q ss_pred             EcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCC--hhhHHHHHHHHHHHHHHHH
Q 012647          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN--PALFDEWKAEMEMMAGRIK  377 (459)
Q Consensus       300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~--~~~~~~~~~~~~~~~~~~~  377 (459)
                      +||||. +++|+|+||+++   +++.++.+.    ........+++.++|.++..+|.+  ..+    .+++++.++.++
T Consensus       249 ~S~sK~-~~~G~r~G~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~l~~~~~~~----~~~~~~~~~~~~  316 (423)
T 3ez1_A          249 ASTSKI-TFAGAGLGFVAS---SEDNIRWLS----KYLGAQSIGPNKVEQARHVKFLTEYPGGL----EGLMRDHAAIIA  316 (423)
T ss_dssp             EESTTT-SCSSSSCEEEEE---CHHHHHHHH----HHHHHSCSCCCHHHHHHHHHHHHHSTTHH----HHHHHHHHHHHH
T ss_pred             eCchhh-ccCCcceEEEEe---CHHHHHHHH----HHHhhhccCCCHHHHHHHHHHHHhccchH----HHHHHHHHHHHH
Confidence            999999 569999999977   787554443    333334457888999988888875  333    455677788888


Q ss_pred             HHHHHHHHHHhhccCCCC-CcccccCCcceeeecCC---CHHHHHHHHhcccEEEcC-C-----------C--cEEEccC
Q 012647          378 NVRQKLFDSLSAKDKSGK-DWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTK-D-----------G--RISLAGL  439 (459)
Q Consensus       378 ~~~~~l~~~L~~~~g~~~-~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~-g-----------g--Ris~~~~  439 (459)
                      ++++.+.+.|.+.++--+ .+.+..+++|+|+|+.+   +.+.+.++++++||.+.| |           +  |||++..
T Consensus       317 ~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~  396 (423)
T 3ez1_A          317 PKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEPVADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP  396 (423)
T ss_dssp             HHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSSCHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS
T ss_pred             HHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCCcHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC
Confidence            888887777762232100 14666788999999865   456666666678999998 2           1  9999866


Q ss_pred             ChhhHHHHHHHHHHHHhhc
Q 012647          440 SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       440 ~~e~i~~~~~~l~~~~~~~  458 (459)
                      +++++++++++|.++++++
T Consensus       397 ~~~~i~~~~~~l~~~l~~~  415 (423)
T 3ez1_A          397 PVEEVRTAMQVVAACIRLA  415 (423)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHH
Confidence            8999999999999998764

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=100.00  E-value=3.1e-40  Score=328.89  Aligned_cols=354  Identities=16%  Similarity=0.177  Sum_probs=269.7

Q ss_pred             CCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCCCCCCcccHHHHHHHHHHHhcCC
Q 012647           66 PPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGAD  143 (459)
Q Consensus        66 ~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~aia~~l~~~~  143 (459)
                      .+.++..+.....   ++++|||+.|.| +..+.  .++.+.+++.+.++..  ....|++..|..++|+++++++.   
T Consensus        18 ~~~~~~~~~~~~~---~~~~i~l~~g~~-~~~~~--~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g---   88 (397)
T 2zyj_A           18 QASTIRELLKLTQ---RPGILSFAGGLP-APELF--PKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIG---   88 (397)
T ss_dssp             CCCHHHHHHHHHT---STTCEEESSCCC-CGGGC--CHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHT---
T ss_pred             CchHHHHHHhhcc---CCCceecCCCCC-CchhC--CHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhC---
Confidence            3444544444332   457899999987 32222  2688999888877531  12578888899999999999983   


Q ss_pred             CCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHH
Q 012647          144 NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI  223 (459)
Q Consensus       144 ~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i  223 (459)
                         +++++|++  |+|++++++++.+.  .+.+||+|+++.|+|..+...++..|++++.+|+++ +  ++|++++++++
T Consensus        89 ---~~~~~v~~--~~g~~~al~~~~~~--~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~--~~d~~~l~~~l  158 (397)
T 2zyj_A           89 ---VRPEEVLI--TTGSQQALDLVGKV--FLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGE-E--GPDLDALEEVL  158 (397)
T ss_dssp             ---SCGGGEEE--ESHHHHHHHHHHHH--HCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEET-T--EECHHHHHHHH
T ss_pred             ---CChhhEEE--eccHHHHHHHHHHH--hCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCC-C--CCCHHHHHHHH
Confidence               33789999  99999999998433  367999999999999999999999999999999853 2  49999999999


Q ss_pred             HcCCCCcEEE-EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc--CCeEEEEE
Q 012647          224 KAAPGGSFIL-LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR--GMELLVAQ  300 (459)
Q Consensus       224 ~~~~~~~~~i-i~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~  300 (459)
                      ++.  +++++ ++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+...  .+++++++
T Consensus       159 ~~~--~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~~  234 (397)
T 2zyj_A          159 KRE--RPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEA--RLPSLFELAREAGYPGVIYLG  234 (397)
T ss_dssp             HHC--CCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSC--CCCCHHHHHHHHTCCCEEEEE
T ss_pred             hhc--CCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCC--CCCchhhhCcccCCCeEEEEe
Confidence            852  34454 6799999999999999999999999999999999999999887532  11223333222  16789999


Q ss_pred             cCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012647          301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR  380 (459)
Q Consensus       301 S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~  380 (459)
                      |+||.++ +|+|+||+++   +++.++.+.....    ....+++.++|.++..+|++..    | +++++.++++++++
T Consensus       235 s~sK~~~-~G~r~G~~~~---~~~~~~~l~~~~~----~~~~~~~~~~~~a~~~~l~~~~----~-~~~~~~~~~~~~~~  301 (397)
T 2zyj_A          235 SFSKVLS-PGLRVAFAVA---HPEALQKLVQAKQ----GADLHTPMLNQMLVHELLKEGF----S-ERLERVRRVYREKA  301 (397)
T ss_dssp             ESTTTTC-GGGCCEEEEC---CHHHHHHHHHHHH----HHHSSCCHHHHHHHHHHHTTTH----H-HHHHHHHHHHHHHH
T ss_pred             ccccccc-ccceeEEEec---CHHHHHHHHHHHH----hhcCCCCHHHHHHHHHHHHhCC----H-HHHHHHHHHHHHHH
Confidence            9999999 9999999965   7775555543222    2223557888888888888653    2 45788899999999


Q ss_pred             HHHHHHHhhccCCCCCcccccCCcceeeecCC----CH-HHHHHHHhcccEEEcCC----------C--cEEEccCChhh
Q 012647          381 QKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKD----------G--RISLAGLSLAK  443 (459)
Q Consensus       381 ~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~g----------g--Ris~~~~~~e~  443 (459)
                      +++.+.|+ +. +|.++.+..+.+|+|+|+.+    +. ++.++|+++ ||.+.+|          +  ||+++..++++
T Consensus       302 ~~l~~~L~-~~-~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~  378 (397)
T 2zyj_A          302 QAMLHALD-RE-VPKEVRYTRPKGGMFVWMELPKGLSAEGLFRRALEE-NVAFVPGGPFFANGGGENTLRLSYATLDREG  378 (397)
T ss_dssp             HHHHHHHH-HH-SCTTSEECCCSBSSEEEEECSTTCCHHHHHHHHHHT-TEEEEESGGGCTTSCCTTEEEEECSSSCHHH
T ss_pred             HHHHHHHH-HH-CCCCeEEccCCccEEEEEEcCCCCCHHHHHHHHHHC-CCEEechHHhcCCCCCCCeEEEEcCCCCHHH
Confidence            99999998 74 11125666778899998754    33 456677765 9999874          2  99998767999


Q ss_pred             HHHHHHHHHHHHhhc
Q 012647          444 CEYLADAIIDSYHNV  458 (459)
Q Consensus       444 i~~~~~~l~~~~~~~  458 (459)
                      +++++++|.++++++
T Consensus       379 i~~~~~~l~~~l~~~  393 (397)
T 2zyj_A          379 IAEGVRRLGRALKGL  393 (397)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988753

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=100.00  E-value=1.9e-40  Score=329.54  Aligned_cols=344  Identities=17%  Similarity=0.094  Sum_probs=262.5

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHH-HHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAA-FNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~-lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +++|+|+.|.+    ..+ .++.+.+++.+.+... ...|++.  ..+ +|+++++++...+|..+++++|++  |+|++
T Consensus        28 ~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~~-~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~--t~g~~   97 (390)
T 1d2f_A           28 ADLLPFTISDM----DFA-TAPCIIEALNQRLMHG-VFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVY--GPSVI   97 (390)
T ss_dssp             --CEECCSSSC----SSC-CCHHHHHHHHHHHTTC-CCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEE--ESCHH
T ss_pred             CCeeEeeecCC----CCC-CCHHHHHHHHHHHhCC-CCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEE--cCCHH
Confidence            47899999986    333 3889999999988653 3678664  678 999999998776776677899999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCC-CCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK-TVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~-~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      ++++++.+  ..+.+||+|+++.|+|..+...++..|++++.+|++.++ ++.+|++.+++++++  .+++++++++|||
T Consensus        98 ~al~~~~~--~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~l~~p~n  173 (390)
T 1d2f_A           98 YMVSELIR--QWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK--PECKIMLLCSPQN  173 (390)
T ss_dssp             HHHHHHHH--HSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS--TTEEEEEEESSCT
T ss_pred             HHHHHHHH--HhcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhcc--CCCeEEEEeCCCC
Confidence            99999843  335699999999999999999999999999999986432 456999999999974  2577888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      |||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+ ....... +.||||.+|++|+|+||+++  
T Consensus       174 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~-~~~~~d~-~~s~sK~~~~~G~r~G~~~~--  247 (390)
T 1d2f_A          174 PTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQ--PHIPWSNV-ARGDWAL-LTSGSKSFNIPALTGAYGII--  247 (390)
T ss_dssp             TTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSS--CCCCGGGT-CCSSEEE-EECSHHHHTCGGGCCEEEEE--
T ss_pred             CCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCcCHHHc-chhhHhh-ccCccHhhcccChhheEEEE--
Confidence            999999999999999999999999999999999886531  11121111 1111133 89999999999999999954  


Q ss_pred             CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCccc
Q 012647          321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK-DKSGKDWSF  399 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~g~~~~~~~  399 (459)
                      ++++..+.+......  ...+.+++.+++.++...|++.      .+.+++.+++++++++++.+.|+ + ++   ++.+
T Consensus       248 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~~~---~~~~  315 (390)
T 1d2f_A          248 ENSSSRDAYLSALKG--RDGLSSPSVLALTAHIAAYQQG------APWLDALRIYLKDNLTYIADKMN-AAFP---ELNW  315 (390)
T ss_dssp             CSHHHHHHHHHHHHT--TSCCCSCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HHCS---SCCC
T ss_pred             CCHHHHHHHHHHHhh--hcccCCCCHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHHHHHHHHH-hhCC---CCEE
Confidence            446644444332210  1223366777777776666532      23367888999999999999998 7 52   1677


Q ss_pred             ccCCcceeeecCC-----CH-HHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHHHHhhcC
Q 012647          400 ILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYHNVS  459 (459)
Q Consensus       400 ~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~~~~~~~  459 (459)
                      ..+++++++|+.+     +. ++.+.|++++||.+.||        +  |||++. +++++++++++|.+++++++
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~~l~~~~  390 (390)
T 1d2f_A          316 QIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-PRSKLEKGVAGLINAIRAVR  390 (390)
T ss_dssp             CCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHHC
T ss_pred             ecCCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhhC
Confidence            7888889888643     33 45667775679999875        2  999998 78999999999999998753

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=100.00  E-value=1.5e-41  Score=350.26  Aligned_cols=342  Identities=13%  Similarity=0.090  Sum_probs=265.0

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC-CCcccHHHHHHHHHHHhcC-CC-Cccc-cCceEEeeccc
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL-PIEGLAAFNKVTAELLFGA-DN-SVLK-EQRVATVQGLS  159 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~-~~~g~~~lr~aia~~l~~~-~~-~~~~-~~~i~~~~t~g  159 (459)
                      ++|+|+.|.|    +.+  ++.+.+++.+.+..   ..|+ +..|.+++|+++++++... ++ ..+. +++|++  |+|
T Consensus       104 ~~i~l~~g~~----~~~--~~~~v~a~~~~~~~---~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~--t~G  172 (533)
T 3f6t_A          104 DAVNYCHTEL----GLN--RDKVVAEWVNGAVA---NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFP--TEG  172 (533)
T ss_dssp             HHHHHHHHTT----CCC--HHHHHHHHHHHHHT---CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEE--EEH
T ss_pred             hheeccCCCC----CcC--CcHHHHHHHHHHHh---CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEE--ECC
Confidence            4789999998    444  45555555555543   3454 7889999999999998554 33 4444 478999  999


Q ss_pred             chhHHHHHHHHHH---HhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeec--CCCCCCCHHHHHHHHHcCCCCcEEEE
Q 012647          160 GTGSLRLAAALIE---RYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD--PKTVGLDFEGMIADIKAAPGGSFILL  234 (459)
Q Consensus       160 gt~a~~l~~~~~~---~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~--~~~~~~d~e~l~~~i~~~~~~~~~ii  234 (459)
                      +++++.++...+.   .+.+||+|++++|+|..|...++..|++++.+|++.  ++++++|++.+++++++   ++++++
T Consensus       173 ~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~---~~k~v~  249 (533)
T 3f6t_A          173 GTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDP---SIKALI  249 (533)
T ss_dssp             HHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCT---TEEEEE
T ss_pred             HHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCC---CCeEEE
Confidence            9999999844311   356999999999999999999999999999999854  45789999999999865   788888


Q ss_pred             eCCCCCCCCCCCCHHHHHHHHHHHH-hcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc
Q 012647          235 HGCAHNPTGIDPTPEQWEKIADVIQ-EKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI  313 (459)
Q Consensus       235 ~~~p~NPTG~~~s~~~l~~i~~l~~-~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri  313 (459)
                      +++||||||.+++.+++++|+++|+ +||+++|+||+|.++.++..     ++...  ..+++++++||||.+|++|+|+
T Consensus       250 l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~-----~~~~~--~~~~~i~~~S~SK~~g~~G~Ri  322 (533)
T 3f6t_A          250 VVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFK-----SIYSV--VPYNTMLVYSYSKLFGCTGWRL  322 (533)
T ss_dssp             EESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCC-----CHHHH--SGGGEEEEEESHHHHTCGGGCE
T ss_pred             EeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCcc-----CHhhc--CCCCEEEEecCcccCCCcccce
Confidence            8899999999999999999999999 68999999999999886421     22222  2358999999999999999999


Q ss_pred             ceEEEEeCChhHHHHHHHH--------------------------------HHhhccccccCCchHHHHH----HHHHhC
Q 012647          314 GAMNVVCSSSDLAARVKSQ--------------------------------LKRLARPMYSNPPVHGARI----VANVVG  357 (459)
Q Consensus       314 G~~~~v~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~----~~~~L~  357 (459)
                      ||+++  ++++..+++++.                                +.......+.+++.+.|.+    +...|.
T Consensus       323 G~l~~--~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~  400 (533)
T 3f6t_A          323 GVIAL--NEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLL  400 (533)
T ss_dssp             EEEEE--ESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHT
T ss_pred             EEEEE--CcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHh
Confidence            99854  444344444332                                2334444555777778777    344453


Q ss_pred             -C---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCC--------------------
Q 012647          358 -N---PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN--------------------  413 (459)
Q Consensus       358 -~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~--------------------  413 (459)
                       +   +.+    .+++++++++++++++.+.+.|.  ++    +.+..+++|+|+|+++.                    
T Consensus       401 ~~~g~~~~----~~~~~~~~~~~~~r~~~l~~~L~--~~----~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~  470 (533)
T 3f6t_A          401 TSTNGGSD----DPYIDIARKLVSERYDQLHDAMQ--AP----KDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFE  470 (533)
T ss_dssp             TCBGGGTB----CHHHHHHHHHHHHHHHHHHHHHT--CC----CCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCC
T ss_pred             hhccccch----HHHHHHHHHHHHHHHHHHHHhcC--CC----ccccCCCceEEEEEehHhhhhhccchHHHHHhhccCC
Confidence             1   112    35678999999999999999985  44    57778899999997653                    


Q ss_pred             -HHHHHHHHhcccEEEcCC-------C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          414 -KAQSDNMTNKWHVYMTKD-------G--RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       414 -~~~~~~ll~~~gI~v~~g-------g--Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                       .+++.++++++||.+.||       |  |||++.++++++++++++|.++++++
T Consensus       471 ~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a~~~~e~i~~~i~~L~~~l~~~  525 (533)
T 3f6t_A          471 QVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQANLPTEDYALIGKQVLELLKEY  525 (533)
T ss_dssp             HHHHHHHHHHHTTSSSCTTEEECSSTTEEEEESSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEeeCCHHHHHHHHHHHHHHHHHH
Confidence             256778888889999996       2  99999789999999999999998763

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=100.00  E-value=7.4e-40  Score=322.35  Aligned_cols=324  Identities=12%  Similarity=0.066  Sum_probs=258.5

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      .+++|+|+.|++    ..+ .++.+.+++.+.+..  ...|++..+ .++|+++++++..      ++++|++  |+|++
T Consensus        29 ~~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~--~~~y~~~~~-~~lr~~la~~~~~------~~~~v~~--~~g~~   92 (365)
T 3get_A           29 VKEVIKLASNEN----PFG-TPPKAIECLRQNANK--AHLYPDDSM-IELKSTLAQKYKV------QNENIII--GAGSD   92 (365)
T ss_dssp             CSCCEECSSCCC----TTC-SCHHHHHHHHHHGGG--TTSCCCTTC-HHHHHHHHHHHTC------CGGGEEE--ESSHH
T ss_pred             CCceEEecCCCC----CCC-CCHHHHHHHHHHHHh--hccCCCCCh-HHHHHHHHHHhCC------CcceEEE--CCCHH
Confidence            368999999986    344 389999999998864  367866666 8999999999742      3789999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      ++++++.  ...+.+||+|+++.|+|..+...++..|++++.+|+ +++++ +|++++++++++   +++++++++||||
T Consensus        93 ~a~~~~~--~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~-~d~~~l~~~l~~---~~~~v~~~~p~np  165 (365)
T 3get_A           93 QVIEFAI--HSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQS-ITHNL-DEFKKLYETHKD---EIKLIFLCLPNNP  165 (365)
T ss_dssp             HHHHHHH--HHHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSS-SSCCH-HHHHHHHHHTTT---TEEEEEEESSCTT
T ss_pred             HHHHHHH--HHHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEec-CCCCC-CCHHHHHHHhCC---CCCEEEEcCCCCC
Confidence            9999984  334679999999999999999999999999999998 34567 999999999975   7888889999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCC--CCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEE
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFAS--GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (459)
                      ||.+++.+++++|+++| ++|+++|+||+|.++.+  .+.  ...+.....+..+++++++||||.+|++|+|+||+++ 
T Consensus       166 tG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-  241 (365)
T 3get_A          166 LGECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSK--KHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIA-  241 (365)
T ss_dssp             TCCCCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGG--GCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEE-
T ss_pred             CCCCcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCc--ccccHhHHhccCCCEEEEeecchHhcCcchheEEEEc-
Confidence            99999999999999999 57999999999998773  211  1112223345567899999999999999999999966 


Q ss_pred             eCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccc
Q 012647          320 CSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF  399 (459)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~  399 (459)
                        +++..+.+    ...... + +++.++|.++..+|++.       +++++.+++++++++++.+.|+ ++|    +++
T Consensus       242 --~~~~~~~~----~~~~~~-~-~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~-~~g----~~~  301 (365)
T 3get_A          242 --NANIISAF----YKLRAP-F-NVSNLALKAAVAAMDDD-------EFTEKTLENNFSQMELYKEFAK-KHN----IKI  301 (365)
T ss_dssp             --CHHHHHHH----HHHSCT-T-CSCHHHHHHHHHHHTCH-------HHHHHHHHHHHHHHHHHHHHHH-HTT----CEE
T ss_pred             --CHHHHHHH----HHhcCC-C-CcCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHH-hCC----CEE
Confidence              88844443    333222 2 57888888888888864       3367889999999999999999 876    566


Q ss_pred             ccCCcceeeecCC---CHH-HHHHHHhcccEEEcCCC-------cEEEccCChhhHHHHHHHHHHHHh
Q 012647          400 ILRQIGMFSFTGL---NKA-QSDNMTNKWHVYMTKDG-------RISLAGLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       400 ~~~~~g~f~~~~l---~~~-~~~~ll~~~gI~v~~gg-------Ris~~~~~~e~i~~~~~~l~~~~~  456 (459)
                      .++. |.|+|+.+   +.+ +.+.|.+ +||.+.+|+       ||+++  +++++++++++|+++++
T Consensus       302 ~~~~-~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~iRis~~--~~~~i~~l~~~l~~~l~  365 (365)
T 3get_A          302 IDSY-TNFITYFFDEKNSTDLSEKLLK-KGIIIRNLKSYGLNAIRITIG--TSYENEKFFTEFDKILR  365 (365)
T ss_dssp             CCCS-SSEEEEECSSSCHHHHHHHHHT-TTEECEECGGGTCSEEEEECC--CHHHHHHHHHHHHHHHC
T ss_pred             CCCC-CeEEEEECCCCCHHHHHHHHHH-CCEEEEECccCCCCEEEEEcC--CHHHHHHHHHHHHHHhC
Confidence            6555 45677755   444 4555555 699999873       99987  78999999999998763

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=100.00  E-value=9.9e-41  Score=332.90  Aligned_cols=336  Identities=16%  Similarity=0.147  Sum_probs=251.5

Q ss_pred             CCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC----CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEee
Q 012647           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG----ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (459)
Q Consensus        81 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~----~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (459)
                      +++++|+|+.|.+    ..+ .+|.+.+++.+.++..    ....|++..|.+++|+++++++.  .|. +++++|++  
T Consensus        31 ~~~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~--~g~-~~~~~v~~--  100 (400)
T 3asa_A           31 PQHTVINLSIGDT----TQP-LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFY--RGF-VDAKEIFI--  100 (400)
T ss_dssp             TTSCCEECSSCCC----CCC-CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTS--TTS-SCGGGEEE--
T ss_pred             CCCceEeccCCCC----CCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHH--cCC-CCHHHEEE--
Confidence            4568999999987    333 3788999888876431    13678888899999999999964  343 55889999  


Q ss_pred             cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCC-eeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEe
Q 012647          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVP-WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (459)
Q Consensus       157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~-v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~  235 (459)
                      |+|++++++++.   ..+.+||+|++++|+|..+...++..|++ ++.+|+++++++..|++.+        ++++++++
T Consensus       101 ~~G~~~al~~~~---~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~--------~~~~~v~l  169 (400)
T 3asa_A          101 SDGAKVDLFRLL---SFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPED--------THIDILCL  169 (400)
T ss_dssp             ESCHHHHHHHHH---HHHCSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCCCCTT--------CCCSEEEE
T ss_pred             ccChHHHHHHHH---HHcCCCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCcccChhhc--------cCccEEEE
Confidence            999999999863   34679999999999999999999999999 9999985433444454321        25667777


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcce
Q 012647          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA  315 (459)
Q Consensus       236 ~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~  315 (459)
                      ++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.  ....+..+-...+++++++||||.||++|+|+||
T Consensus       170 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~  247 (400)
T 3asa_A          170 CSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPS--LPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGW  247 (400)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTT--SCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEE
T ss_pred             eCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCC--CCCchhhCCCCCCceEEEecchhhcCCcchheeE
Confidence            89999999999999999999999999999999999998876531  0111111111124689999999999999999999


Q ss_pred             EEEEeCChhH-------HHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012647          316 MNVVCSSSDL-------AARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  388 (459)
Q Consensus       316 ~~~v~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  388 (459)
                      +++   +++.       ++.+.....   ...+.+++.++|.++..+|++.        ++++.+++++++++++.+.|+
T Consensus       248 ~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~l~~~--------~~~~~~~~~~~~~~~l~~~L~  313 (400)
T 3asa_A          248 TVI---PQELTYADGHFVIQDWERFL---STTFNGASIPAQEAGVAGLSIL--------PQLEAIHYYRENSDLLRKALL  313 (400)
T ss_dssp             EEC---CTTCBCTTSCBHHHHHHHHH---HHHCCCCCHHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHHHHHH
T ss_pred             Eee---ChhhccchhhhHHHHHHHHh---ccCccCCChHHHHHHHHHhCcH--------HHHHHHHHHHHHHHHHHHHHH
Confidence            955   6664       344432211   1223357788888887777543        146778899999999999999


Q ss_pred             hccCCCCCcccccCCcceeeecC-CC-----HHHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHH
Q 012647          389 AKDKSGKDWSFILRQIGMFSFTG-LN-----KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAII  452 (459)
Q Consensus       389 ~~~g~~~~~~~~~~~~g~f~~~~-l~-----~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~  452 (459)
                       ++|    +++..+.+|+|+|+. +.     .+++++|++++||.+.||        +  |||+.. +++++++++++|+
T Consensus       314 -~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~-~~e~i~~~l~~l~  387 (400)
T 3asa_A          314 -ATG----FEVFGGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLG-KREDILAACERLQ  387 (400)
T ss_dssp             -HTT----CEEEECSSSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCS-CHHHHHHHHHHHH
T ss_pred             -HCC----CeeeCCCCceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeC-CHHHHHHHHHHHH
Confidence             876    577777778888876 42     256778887779999875        2  999655 8999999999999


Q ss_pred             HHHhhcC
Q 012647          453 DSYHNVS  459 (459)
Q Consensus       453 ~~~~~~~  459 (459)
                      +++++.+
T Consensus       388 ~~~~~~~  394 (400)
T 3asa_A          388 MAPALQS  394 (400)
T ss_dssp             C------
T ss_pred             HHHHhhh
Confidence            9887653

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=100.00  E-value=1e-40  Score=334.39  Aligned_cols=358  Identities=17%  Similarity=0.127  Sum_probs=254.9

Q ss_pred             CCCccchhHHHhh-hCCCCCceeecccccCCCCCC-ccCcHHHHHHHHHHhhcCC----CCCCCCCcccHHHHHHHHHHH
Q 012647           66 PPDPILGVSEAFK-ADTDEKKLNLGVGAYRTEELQ-PYVLDVVKKAENLMLERGE----NKEYLPIEGLAAFNKVTAELL  139 (459)
Q Consensus        66 ~~~~i~~~~~~~~-~~~~~~~i~l~~g~~~~~~~~-~~~~~~v~~a~~~~~~~~~----~~~Y~~~~g~~~lr~aia~~l  139 (459)
                      .++.+...+..+. ...++++|+|+.|.|    .. |++.+.+.+++.+.+....    ...|.+..|.++||+++|+++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~   88 (417)
T 3g7q_A           13 RHSGITRLMEDLNDGLRTPGAIMLGGGNP----AHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLL   88 (417)
T ss_dssp             ---CHHHHHHHHHC-----CCEECSCCCC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHhhccCCCceEecCcCC----CCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHH
Confidence            3555655555443 334578999999988    22 3223677777777764321    147999999999999999999


Q ss_pred             hcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCC-----EEEEc-CCCCcchHHHhhh------CCCCeeeeeee
Q 012647          140 FGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA-----KVLIS-SPTWGNHKNIFND------ARVPWSEYRYY  207 (459)
Q Consensus       140 ~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd-----~Vlv~-~p~y~~~~~~~~~------~G~~v~~v~~~  207 (459)
                      ...+|..+++++|++  |+|++++++++.+.  .+.+||     +|+++ +|+|..|...+..      .+..+..++.+
T Consensus        89 ~~~~g~~~~~~~i~~--t~G~t~al~~~~~~--l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (417)
T 3g7q_A           89 RETLGWDIEPQNIAL--TNGSQSAFFYLFNL--FAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEG  164 (417)
T ss_dssp             HHHHCCCCCGGGEEE--ESCHHHHHHHHHHH--HSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGG
T ss_pred             HHHhCCCCCcccEEE--eCCcHHHHHHHHHH--HcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCc
Confidence            877788888999999  99999999998443  366887     89997 9999998776532      22333333321


Q ss_pred             cCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHH
Q 012647          208 DPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR  287 (459)
Q Consensus       208 ~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~  287 (459)
                       ..++.+|++.++  ++   ++++++++++||||||.+++.+++++|+++|++||+++|+||+|..+..+....+..   
T Consensus       165 -~~~~~~d~~~l~--~~---~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~---  235 (417)
T 3g7q_A          165 -QFKYHVDFEHLH--IG---EETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEAR---  235 (417)
T ss_dssp             -EEEEECCGGGCC--CC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCC---
T ss_pred             -ccccccCHHHhc--cc---cCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccc---
Confidence             124678999987  44   378899999999999999999999999999999999999999997643210000000   


Q ss_pred             HHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHH
Q 012647          288 LFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA  367 (459)
Q Consensus       288 ~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~  367 (459)
                        ....++++++.|||| ++++|+|+||+++   ++++.+.+..    .......+++.++|.++..++++.++.    +
T Consensus       236 --~~~~~~~i~~~s~sK-~~~~G~r~G~~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~----~  301 (417)
T 3g7q_A          236 --PLWNPNIILCMSLSK-LGLPGSRCGIIIA---NDKTITAIAN----MNGIISLAPGGMGPAMMCEMIKRNDLL----R  301 (417)
T ss_dssp             --CCCCTTEEEEEESGG-GTCTTSCCEEEEC---CHHHHHHHHH----HHHHHCCCCCSHHHHHHHHHHHTTCHH----H
T ss_pred             --cCCCCCEEEEEechh-ccCCCcceEEEEe---CHHHHHHHHH----hhcceeeCCCcHHHHHHHHHHcCcchH----H
Confidence              122467999999999 6889999999865   8885554443    333334467788888888888876653    3


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHhhccCCCC-CcccccCCcceeeecCC-----CHHH-HHHHHhcccEEEcCC--------
Q 012647          368 EMEM-MAGRIKNVRQKLFDSLSAKDKSGK-DWSFILRQIGMFSFTGL-----NKAQ-SDNMTNKWHVYMTKD--------  431 (459)
Q Consensus       368 ~~~~-~~~~~~~~~~~l~~~L~~~~g~~~-~~~~~~~~~g~f~~~~l-----~~~~-~~~ll~~~gI~v~~g--------  431 (459)
                      ++.+ ++++++++++.+.+.|. +. ++. ++.+..+++|+|+|+.+     +.+. .+.| .++||.+.||        
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~l~-~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l-~~~gi~v~~g~~f~~~~~  378 (417)
T 3g7q_A          302 LSETVIKPFYYQRVQQTIAIIR-RY-LSEERCLIHKPEGAIFLWLWFKDLPITTELLYQRL-KARGVLMVPGHYFFPGLD  378 (417)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHH-HH-CCTTTCEEECCCBSSEEEEECTTCSSCHHHHHHHH-HHTTEECEEGGGGCTTBS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-Hh-cccCCceeeCCCcceEEEEEcCCCCCCHHHHHHHH-HHCCEEEECchhhCCCCc
Confidence            3444 77888899999988887 53 111 25677788999999743     4444 4555 5579999874        


Q ss_pred             -------C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          432 -------G--RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       432 -------g--Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                             +  |||++. +++++++++++|.++++++
T Consensus       379 ~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~~l~~~  413 (417)
T 3g7q_A          379 KPWPHTHQCMRMNYVP-EPDKIEAGVKILAEEIERA  413 (417)
T ss_dssp             SCCGGGGGEEEEESCS-CHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCCeEEEEecC-CHHHHHHHHHHHHHHHHHH
Confidence                   2  999998 9999999999999998764

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=100.00  E-value=1.8e-39  Score=319.88  Aligned_cols=324  Identities=18%  Similarity=0.147  Sum_probs=258.1

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      .+++|+|+.|++    ..+ .++.+.+++.+.+.......|++ .+.+++|+++++++...     ++++|++  |+|++
T Consensus        29 ~~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~~~~~~y~~-~~~~~l~~~la~~~g~~-----~~~~i~~--~~g~t   95 (367)
T 3euc_A           29 SHGLVKLDAMEN----PYR-LPPALRSELAARLGEVALNRYPV-PSSEALRAKLKEVMQVP-----AGMEVLL--GNGSD   95 (367)
T ss_dssp             CTTCEECCSSCC----CCC-CCHHHHHHHHHHHHHHHTTCSCC-CCHHHHHHHHHHHHTCC-----TTCEEEE--EEHHH
T ss_pred             CCCeeEccCCCC----CCC-CCHHHHHHHHHHhhhhhhhcCCC-CcHHHHHHHHHHHhCCC-----CcceEEE--cCCHH
Confidence            457899999986    444 38899999998876422367854 68899999999997431     3689999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      ++++++.  ...+.+||+|+++.|+|..+...++..|++++.+|++  .++.+|++.+++++++.  +++++++++||||
T Consensus        96 ~a~~~~~--~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~--~~~~v~~~~~~np  169 (367)
T 3euc_A           96 EIISMLA--LAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLR--ADFTLDRGAMLAAMAEH--QPAIVYLAYPNNP  169 (367)
T ss_dssp             HHHHHHH--HHTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECC--TTSCCCHHHHHHHHHHH--CCSEEEEESSCTT
T ss_pred             HHHHHHH--HHHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCC--CCCCCCHHHHHHHhhcc--CCCEEEEcCCCCC
Confidence            9999984  3336799999999999999999999999999999984  36789999999999852  4567777899999


Q ss_pred             CCCCCCHHHHHHHHHHHHhc--CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEE
Q 012647          242 TGIDPTPEQWEKIADVIQEK--NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~--~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (459)
                      ||.+++.+++++|+++|++|  |+++|+||+|.++...+   ..    ......++++++.||||. +++|+|+||+++ 
T Consensus       170 tG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~---~~----~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~-  240 (367)
T 3euc_A          170 TGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES---WM----SRLTDFGNLLVMRTVSKL-GLAGIRLGYVAG-  240 (367)
T ss_dssp             TCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCC---SG----GGGGTCTTEEEEEECCCT-TSCSCCEEEEEE-
T ss_pred             CCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccc---hH----HHHhhCCCEEEEecchhh-cccccCceeeee-
Confidence            99999999999999999999  99999999999887432   11    123455788999999999 999999999976 


Q ss_pred             eCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCcc
Q 012647          320 CSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWS  398 (459)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~  398 (459)
                        +++    +.+.+.....  ..+++.+++.++..+|++.       +.+++.+++++++++++.+.|+ ++ |    +.
T Consensus       241 --~~~----~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~-~~~g----~~  300 (367)
T 3euc_A          241 --DPQ----WLEQLDKVRP--PYNVNVLTEATALFALEHV-------AVLDEQAAQLRAERSRVAEGMA-AHGG----VT  300 (367)
T ss_dssp             --CHH----HHHHHGGGCC--SSCCCHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHHHHH-TSTT----CE
T ss_pred             --CHH----HHHHHHHhCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHH-hCCC----cE
Confidence              777    4444544333  2357888888888888763       2357888999999999999999 87 4    56


Q ss_pred             cccCCcceeeecCC-CHHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHHHh
Q 012647          399 FILRQIGMFSFTGL-NKAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       399 ~~~~~~g~f~~~~l-~~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~~~  456 (459)
                      +. +.+|+|+|+.+ +.+.+...++++||.+.+|+          |||++  +++++++++++|+++++
T Consensus       301 ~~-~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~--~~~~i~~~~~~l~~~l~  366 (367)
T 3euc_A          301 VF-PSAANFLLARVPDAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS--TPEENAQFLEAFAASLQ  366 (367)
T ss_dssp             EC-CCSSSEEEEECSCHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC--CHHHHHHHHHHHHHHTC
T ss_pred             EC-CCCCeEEEEECCCHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC--CHHHHHHHHHHHHHHhc
Confidence            44 45677888766 44444444456799998762          99987  78999999999999875

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=100.00  E-value=3.3e-39  Score=317.45  Aligned_cols=321  Identities=14%  Similarity=0.113  Sum_probs=253.4

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      .+++|+|+.|++    ..+ +++.+.+++.+.+..  ...| |..+..++|+++++++..      ++++|++  |+|++
T Consensus        31 ~~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~--~~~y-~~~~~~~lr~~la~~~~~------~~~~v~~--~~g~t   94 (363)
T 3ffh_A           31 LTKITKLSSNEN----PLG-TSKKVAAIQANSSVE--TEIY-PDGWASSLRKEVADFYQL------EEEELIF--TAGVD   94 (363)
T ss_dssp             CSCCEECSSCSC----TTC-CCHHHHHHHHTCBSC--CCBC-----CHHHHHHHHHHHTC------CGGGEEE--ESSHH
T ss_pred             CCceEEccCCCC----CCC-CCHHHHHHHHHHHHH--hhcC-CCcchHHHHHHHHHHhCC------ChhhEEE--eCCHH
Confidence            468999999986    444 389999999887643  3556 667899999999999852      3789999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      ++++++.+  ..+.+||+|++++|+|..+...++..|++++.+|++  .++.+|++++++++++   +++++++++||||
T Consensus        95 ~a~~~~~~--~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~---~~~~v~~~~p~np  167 (363)
T 3ffh_A           95 ELIELLTR--VLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLL--QDGEHDLEGMLNAIDE---KTTIVWICNPNNP  167 (363)
T ss_dssp             HHHHHHHH--HHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECC--TTSCCCHHHHHHHCCT---TEEEEEEESSCTT
T ss_pred             HHHHHHHH--HHccCCCEEEEcCCChHHHHHHHHHcCCEEEEecCC--CCCCcCHHHHHHhccc---CCCEEEEeCCCCC
Confidence            99999843  346799999999999999999999999999999984  3688999999999975   7888889999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+++.+++.+|++.|++ |+++|+||+|.++.++..    .+........++++++.||||.+|++|+|+||+++   
T Consensus       168 tG~~~~~~~l~~l~~~~~~-~~~li~De~~~~~~~~~~----~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~---  239 (363)
T 3ffh_A          168 TGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYVTPQP----EKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIA---  239 (363)
T ss_dssp             TCCCCCHHHHHHHHTTSCT-TSEEEEECTTGGGCSSCC----CCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEE---
T ss_pred             cCCCcCHHHHHHHHHhCCC-CcEEEEeCchHhhcCccc----cCHHHHhhcCCCEEEEeechhhhcCchhceeeeec---
Confidence            9999999999999998887 999999999998875211    11112234567899999999999999999999976   


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCcccc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK-DKSGKDWSFI  400 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~g~~~~~~~~  400 (459)
                      +++..    +.+.....  ..+++.+++.++...|++.       +.+++.+++++++++++.+.|+ + .|    +.+.
T Consensus       240 ~~~~~----~~l~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~-~~~g----~~~~  301 (363)
T 3ffh_A          240 DKEII----RQLNIVRP--PFNTTSIGQKLAIEAIKDQ-------AFIGECRTSNANGIKQYEAFAK-RFEK----VKLY  301 (363)
T ss_dssp             CHHHH----HHHHHTCC--SCCCBHHHHHHHHHHHHCH-------HHHHHHHHHHHHHHHHHHHHHH-HCTT----CEEC
T ss_pred             CHHHH----HHHHHhCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHh-hCCC----ceEC
Confidence            88844    44444332  2367888888888887654       2367888999999999999999 7 55    5666


Q ss_pred             cCCcceeeecCC--CH-HHHHHHHhcccEEEcCCC--------cEEEccCChhhHHHHHHHHHHHH
Q 012647          401 LRQIGMFSFTGL--NK-AQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       401 ~~~~g~f~~~~l--~~-~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e~i~~~~~~l~~~~  455 (459)
                      ++. |.|+|+.+  +. ++.+.|.+ +||.+.+|.        ||+++  +++++++++++|++++
T Consensus       302 ~~~-~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~iRis~~--~~~~i~~~~~~l~~~l  363 (363)
T 3ffh_A          302 PAN-GNFVLIDLGIEAGTIFSYLEK-NGYITRSGAALGFPTAVRITIG--KEEDNSAVIALLEKLL  363 (363)
T ss_dssp             CCC-SSEEEEECSSCHHHHHHHHHH-TTEECEETTTTTCTTEEEEECC--CHHHHHHHHHHHHHHC
T ss_pred             CCC-CeEEEEECCCCHHHHHHHHHH-CCeEEEeCccCCCCCeEEEECC--CHHHHHHHHHHHHHhC
Confidence            555 55777765  34 44556665 699999863        99987  8899999999998763

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=100.00  E-value=1.4e-39  Score=321.66  Aligned_cols=312  Identities=17%  Similarity=0.142  Sum_probs=250.3

Q ss_pred             HHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCc
Q 012647          109 AENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWG  188 (459)
Q Consensus       109 a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~  188 (459)
                      ++.+.+... ...|++..|.++||+++++++..     +++++|++  |+||++++.++.  ...+.+||+|++++|+|.
T Consensus        47 ~~~~~~~~~-~~~y~~~~g~~~l~~~la~~~~~-----~~~~~v~~--~~g~~~a~~~~~--~~l~~~gd~Vl~~~~~~~  116 (375)
T 3op7_A           47 DFYKKLQGT-KLNYGWIEGSPAFKKSVSQLYTG-----VKPEQILQ--TNGATGANLLVL--YSLIEPGDHVISLYPTYQ  116 (375)
T ss_dssp             HHHHHHHTS-CCSSCCTTCCHHHHHHHHTTSSS-----CCGGGEEE--ESHHHHHHHHHH--HHHCCTTCEEEEEESSCT
T ss_pred             HHHHHHhcC-CcCCCCCCChHHHHHHHHHHhcc-----CChhhEEE--cCChHHHHHHHH--HHhcCCCCEEEEeCCCch
Confidence            333444444 37899999999999999998632     33789999  999999999984  444779999999999999


Q ss_pred             chHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEe
Q 012647          189 NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFD  268 (459)
Q Consensus       189 ~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~D  268 (459)
                      .+...++..|++++.+|++.++++.+|++.+++++++   +++++++++||||||.+++.+++++|+++|++||+++|+|
T Consensus       117 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~D  193 (375)
T 3op7_A          117 QLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRP---TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSD  193 (375)
T ss_dssp             HHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT---TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEE
T ss_pred             hHHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhcc---CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence            9999999999999999997556778999999999975   6778888999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHH
Q 012647          269 VAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHG  348 (459)
Q Consensus       269 eay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (459)
                      |+|.++.+++.    ..+   .+..++++++.||||.+|++|+|+||+++   +++    +.+.+.........+++.+.
T Consensus       194 e~~~~~~~~~~----~~~---~~~~~~~i~~~s~sK~~~~~G~r~G~v~~---~~~----l~~~~~~~~~~~~~~~~~~~  259 (375)
T 3op7_A          194 EVYRSFSELDV----PSI---IEVYDKGIAVNSLSKTYSLPGIRIGWVAA---NHQ----VTDILRDYRDYTMICAGVFD  259 (375)
T ss_dssp             CCSCCCSSSCC----CCH---HHHCTTEEEEEESSSSSSCGGGCCEEEEC---CHH----HHHHHTTTGGGTTSCCCHHH
T ss_pred             cccccccccCC----Cch---hhhcCCEEEEeEChhhcCCcccceEEEEe---CHH----HHHHHHHHHhhhccCCCcHH
Confidence            99999886421    121   23356789999999999999999999955   888    44445444444444667777


Q ss_pred             HHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC----C-HHHHHHHHhc
Q 012647          349 ARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----N-KAQSDNMTNK  423 (459)
Q Consensus       349 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l----~-~~~~~~ll~~  423 (459)
                      +.++...|++.      .+.+++.+++++++++.+.+.|+ +.+   .+.+..+.++++.|+.+    + .+++++++++
T Consensus       260 ~~~~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~l~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  329 (375)
T 3op7_A          260 DLVAQLALAHY------QEILERNRHILEENLAILDQWIE-EEP---LVSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQE  329 (375)
T ss_dssp             HHHHHHHHHTH------HHHHHHHHHHHHHHHHHHHHHHH-HCT---TEEECCCSSSSCEEEEECCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHh-hCC---CceEecCCCeEEEeEEcCCCCCHHHHHHHHHHh
Confidence            77777666532      34567888999999999999999 753   26677788887776532    3 4567788777


Q ss_pred             ccEEEcCCC--------cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          424 WHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       424 ~gI~v~~gg--------Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      +||.+.||.        ||+++. +++++++++++|.++++++
T Consensus       330 ~gi~v~~g~~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~l~~~  371 (375)
T 3op7_A          330 HGVLLVPGNRFERDGYVRLGFAC-EQETLIKGLEKLSQFLRRF  371 (375)
T ss_dssp             HCEECEEGGGGTCTTEEEECCCS-CHHHHHHHHHHHHHHHGGG
T ss_pred             CCEEEeChhhhCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHH
Confidence            899998862        999987 6789999999999999865

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=100.00  E-value=2.7e-40  Score=340.98  Aligned_cols=338  Identities=11%  Similarity=0.053  Sum_probs=252.2

Q ss_pred             ceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcC-CCC---ccccCceEEeecccc
Q 012647           85 KLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGA-DNS---VLKEQRVATVQGLSG  160 (459)
Q Consensus        85 ~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~-~~~---~~~~~~i~~~~t~gg  160 (459)
                      +|+|++|.|    +++  ++.+.+++.+.+..   ..|++..|..++|+++++++... ++.   ..++++|++  |+|+
T Consensus       106 ~i~l~~g~~----~~~--~~~~~~al~~~~~~---~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~--t~G~  174 (546)
T 2zy4_A          106 SLSYVRDQL----GLD--PAAFLHEMVDGILG---CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFA--VEGG  174 (546)
T ss_dssp             HHHHHHHTS----CCC--HHHHHHHHHHHHHT---CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEE--EEHH
T ss_pred             hhecccCCC----CCC--ChHHHHHHHHhhhc---CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEE--ECCH
Confidence            789999987    443  56666677666532   67988889999999988765432 222   125789999  9999


Q ss_pred             hhHHHHHHHHHH---HhCCCCEEEEcCCCCcchHHHhh--hCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEe
Q 012647          161 TGSLRLAAALIE---RYFPGAKVLISSPTWGNHKNIFN--DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (459)
Q Consensus       161 t~a~~l~~~~~~---~~~~gd~Vlv~~p~y~~~~~~~~--~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~  235 (459)
                      ++++.++...+.   .+.+||+|++++|+|..|...+.  ..|++++++|++++++|.+|++.+++.+..   +++++++
T Consensus       175 ~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~---~~k~v~l  251 (546)
T 2zy4_A          175 TAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDP---AIKIFFC  251 (546)
T ss_dssp             HHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGST---TEEEEEE
T ss_pred             HHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCC---CCeEEEE
Confidence            999999854421   25699999999999999998754  457889999987666788999999887653   7788888


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHH--HhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc
Q 012647          236 GCAHNPTGIDPTPEQWEKIADVI--QEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI  313 (459)
Q Consensus       236 ~~p~NPTG~~~s~~~l~~i~~l~--~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri  313 (459)
                      ++||||||.+++.+++++|+++|  +++|++||+||+|.++.++.     .++...  ..+++++++||||.+|++|+|+
T Consensus       252 ~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~-----~s~~~~--~~~~~i~~~S~SK~~g~~GlRi  324 (546)
T 2zy4_A          252 VNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDF-----QSLFAI--CPENTLLVYSFSKYFGATGWRL  324 (546)
T ss_dssp             ESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTC-----CCHHHH--CGGGEEEEEESTTTTTCGGGCE
T ss_pred             ECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccC-----cCHHHh--CCCCEEEEEeCccccCCCCcce
Confidence            99999999999999999999999  78999999999999987531     122222  1257999999999999999999


Q ss_pred             ceEEEEeCChhHHHHHHHHH------------Hh--------------------hccccccCCchHHHHHH-----HHHh
Q 012647          314 GAMNVVCSSSDLAARVKSQL------------KR--------------------LARPMYSNPPVHGARIV-----ANVV  356 (459)
Q Consensus       314 G~~~~v~~~~~~~~~~~~~~------------~~--------------------~~~~~~~~~~~~~~~~~-----~~~L  356 (459)
                      ||+++  +++++++.+...+            ..                    .......+.+.+.|.++     ..++
T Consensus       325 G~~~~--~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all  402 (546)
T 2zy4_A          325 GVVAA--HQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALM  402 (546)
T ss_dssp             EEEEE--ESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEE--CCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHH
Confidence            99965  3333555553211            10                    01122235677777653     2445


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCC---------------------HH
Q 012647          357 GNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN---------------------KA  415 (459)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~---------------------~~  415 (459)
                      .+.      ..++++.++.|+++++.+.+.|. . +    +.+..+++|||+|+++.                     .+
T Consensus       403 ~~~------~~~~~~~r~~~~~r~~~l~~~L~-~-~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~  470 (546)
T 2zy4_A          403 DEA------DEYKHTLKQLIRRRETTLYRELG-M-P----PLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGD  470 (546)
T ss_dssp             CTT------CHHHHHHHHHHHHHHHHHHGGGT-S-S----CCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHH
T ss_pred             hcc------HHHHHHHHHHHHHHHHHHHHhcC-C-C----cccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHH
Confidence            543      13357888899999998888775 2 2    35567889999887642                     24


Q ss_pred             HHHHHHhcccEEEcCCC---------cEEEccCChhhHHHHHHHHHHHHhh
Q 012647          416 QSDNMTNKWHVYMTKDG---------RISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       416 ~~~~ll~~~gI~v~~gg---------Ris~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                      ++.++++++||.+.||.         |||++..+++++++++++|++++++
T Consensus       471 ~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~  521 (546)
T 2zy4_A          471 MLFRIADETGIVLLPGRGFGSNRPSGRASLANLNEYEYAAIGRALRKMADE  521 (546)
T ss_dssp             HHHHHHHHHSCCCEESSCTTCSSCEEEEESSSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCEEEeCccccCCCCCeEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence            46677777899999972         9999977899999999999998865

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=100.00  E-value=3.2e-39  Score=316.91  Aligned_cols=314  Identities=17%  Similarity=0.186  Sum_probs=242.7

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      +++|+|+.|++    ..++ ++.+      .+. . ..+|++. +.+++|+++|+++..      ++++|++  |+|+++
T Consensus        29 ~~~i~l~~~~~----~~~~-~~~v------a~~-~-~~~Y~~~-~~~~lr~~la~~~~~------~~~~v~~--~~G~~~   86 (356)
T 1fg7_A           29 NGDVWLNANEY----PTAV-EFQL------TQQ-T-LNRYPEC-QPKAVIENYAQYAGV------KPEQVLV--SRGADE   86 (356)
T ss_dssp             TCSEECSSCCC----SSCC-CCCC------CCC-C-TTSCCCS-SCHHHHHHHHHHHTS------CGGGEEE--ESHHHH
T ss_pred             CceEEeeCCCC----CCCC-CHhH------hhh-h-hccCCCc-cHHHHHHHHHHHhCC------ChHHEEE--cCCHHH
Confidence            36899999986    3333 3444      122 2 3678554 689999999999732      3689999  999999


Q ss_pred             HHHHHHHHHHHhCCC-CEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          163 SLRLAAALIERYFPG-AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       163 a~~l~~~~~~~~~~g-d~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      +++++.+  ..+.+| |+|++++|+|..|...++..|++++.+|++  +++++|+++++++++    +++++++++||||
T Consensus        87 ai~~~~~--~~~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~----~~~~v~l~~p~np  158 (356)
T 1fg7_A           87 GIELLIR--AFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTL--DNWQLDLQGISDKLD----GVKVVYVCSPNNP  158 (356)
T ss_dssp             HHHHHHH--HHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCC--TTSCCCHHHHHTSCT----TEEEEEEESSCTT
T ss_pred             HHHHHHH--HHhCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCC--CCCCCCHHHHHHHhc----CCCEEEEeCCCCC
Confidence            9999843  336799 999999999999999999999999999984  467899999988775    5678888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+++.+++++|+++|+ +|+++|+||+|.++...   .   ++..+.+..+++++++||||.||++|+|+||+++   
T Consensus       159 tG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~---~---~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~---  228 (356)
T 1fg7_A          159 TGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQ---A---SLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLA---  228 (356)
T ss_dssp             TCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGG---G---CSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEE---
T ss_pred             CCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCC---C---cHHHHHhhCCCEEEEecchHhhcCchhhhEEEEe---
Confidence            999999999999999999 99999999999988621   1   1112234456899999999999999999999976   


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  401 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  401 (459)
                      +++.++.    +..... .+ +++.++|.++..+|++.++     +++++.+++++++++++.+.|+ +++   ++....
T Consensus       229 ~~~~~~~----l~~~~~-~~-~~~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~~~~~~l~~~L~-~~~---~~~~~~  293 (356)
T 1fg7_A          229 NEEVINL----LMKVIA-PY-PLSTPVADIAAQALSPQGI-----VAMRERVAQIIAEREYLIAALK-EIP---CVEQVF  293 (356)
T ss_dssp             CHHHHHH----HHHHSC-SS-CSCHHHHHHHHHHTSHHHH-----HHHHHHHHHHHHHHHHHHHHHH-HST---TEEEEC
T ss_pred             CHHHHHH----HHHhcC-CC-CCCHHHHHHHHHHhcCccH-----HHHHHHHHHHHHHHHHHHHHHH-hCC---CceEEC
Confidence            8884444    333322 23 6788888888888875433     1367888999999999999999 875   122334


Q ss_pred             CCcceeeecCC-CH-HHHHHHHhcccEEEcC-C------C--cEEEccCChhhHHHHHHHHHHH
Q 012647          402 RQIGMFSFTGL-NK-AQSDNMTNKWHVYMTK-D------G--RISLAGLSLAKCEYLADAIIDS  454 (459)
Q Consensus       402 ~~~g~f~~~~l-~~-~~~~~ll~~~gI~v~~-g------g--Ris~~~~~~e~i~~~~~~l~~~  454 (459)
                      +.+|+|+|+.+ +. ++.++| .++||.+.+ |      +  |||++  +++++++++++|+++
T Consensus       294 ~~~~~~~~~~~~~~~~l~~~L-~~~gI~v~~~g~~~~~~~~iRis~~--~~~e~~~~~~~l~~~  354 (356)
T 1fg7_A          294 DSETNYILARFKASSAVFKSL-WDQGIILRDQNKQPSLSGCLRITVG--TREESQRVIDALRAE  354 (356)
T ss_dssp             CCSSSEEEEEETTHHHHHHHH-HHTTEECEECTTSTTCTTEEEEECC--CHHHHHHHHHHHHTC
T ss_pred             CCCCeEEEEECCCHHHHHHHH-HHCCEEEEECCCCCCCCCeEEEEeC--CHHHHHHHHHHHHhh
Confidence            55678888866 34 445666 557999998 5      2  99987  678999999998753

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=100.00  E-value=1.4e-39  Score=329.02  Aligned_cols=365  Identities=14%  Similarity=0.086  Sum_probs=264.8

Q ss_pred             CCCccchhHHHhhh-CCCCCce-eecccccCCCCCCccCcHHHHHHHHHHhhc-------C----CCCCCCCCcccHHHH
Q 012647           66 PPDPILGVSEAFKA-DTDEKKL-NLGVGAYRTEELQPYVLDVVKKAENLMLER-------G----ENKEYLPIEGLAAFN  132 (459)
Q Consensus        66 ~~~~i~~~~~~~~~-~~~~~~i-~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-------~----~~~~Y~~~~g~~~lr  132 (459)
                      +++++...+..+.. ...+++| +|+.|.| +  ..|++.+.+.+++.+.+..       .    ....|.+..|.+++|
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~p-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr   89 (444)
T 3if2_A           13 QPTGISQLMDDLGDALKSDQPVNMLGGGNP-A--KIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFI   89 (444)
T ss_dssp             SCCHHHHHHHHHHHHHHSSSCCEECSCCCC-C--CCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHH
T ss_pred             CchhHHHHHHHHHhhhcCchhhhccCCCCC-C--cccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHH
Confidence            35566665544321 1247899 9999988 1  1222235666667666543       1    025799999999999


Q ss_pred             HHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCC--------------EEEEc-CCCCcchHH-----
Q 012647          133 KVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA--------------KVLIS-SPTWGNHKN-----  192 (459)
Q Consensus       133 ~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd--------------~Vlv~-~p~y~~~~~-----  192 (459)
                      +++|+++...+|..+++++|++  |+|++++++++.  ...+.+||              +|+++ +|+|..|..     
T Consensus        90 ~~ia~~l~~~~g~~~~~~~i~~--t~G~t~al~~~~--~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~  165 (444)
T 3if2_A           90 DALVGFFNRHYDWNLTSENIAL--TNGSQNAFFYLF--NLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEG  165 (444)
T ss_dssp             HHHHHHHHHHHCCCCCGGGEEE--ESSHHHHHHHHH--HHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSS
T ss_pred             HHHHHHHHhhcCCCCCHHHEEE--ecCcHHHHHHHH--HHHhCCCccccccccccccccceEEEeCCCCccchhhccccc
Confidence            9999999887788888999999  999999999984  33356887              78876 999999876     


Q ss_pred             -HhhhCCCCeeeeeeecCC---CCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEe
Q 012647          193 -IFNDARVPWSEYRYYDPK---TVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFD  268 (459)
Q Consensus       193 -~~~~~G~~v~~v~~~~~~---~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~D  268 (459)
                       .+...|.+++.+|+++++   ++++|++.|++++....++++++++++||||||.+++.+++++|+++|++||+++|+|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~D  245 (444)
T 3if2_A          166 QHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIID  245 (444)
T ss_dssp             CCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred             chhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEE
Confidence             345678888888874211   3579999999884321237888999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHH
Q 012647          269 VAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHG  348 (459)
Q Consensus       269 eay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (459)
                      |+|..+.......+..     ....++++++.||||. +++|+|+||+++   ++++.+.+...    ......+++.++
T Consensus       246 e~~~~~~~~~~~~~~~-----~~~~~~~i~~~S~sK~-~~~G~r~G~~~~---~~~l~~~~~~~----~~~~~~~~~~~~  312 (444)
T 3if2_A          246 NAYGMPFPNIIYSDAH-----LNWDNNTILCFSLSKI-GLPGMRTGIIVA---DAKVIEAVSAM----NAVVNLAPTRFG  312 (444)
T ss_dssp             CTTCTTTTCCBCSCCC-----CCCCTTEEEEEESTTT-TCGGGCCEEEEC---CHHHHHHHHHH----HHHHHSSCCCHH
T ss_pred             CCCCCccccccccccc-----ccCCCCEEEEechhhc-cCCCCceEEEEE---CHHHHHHHHHH----HHhccCCCChHH
Confidence            9997533210000000     1224679999999997 789999999865   77755554433    223334667788


Q ss_pred             HHHHHHHhCChhhHHHHHHHHHH-HHHHHHHHHHHHHHHHhhc-cCCCCCcccccCCcceeeecC-----CCHHH-HHHH
Q 012647          349 ARIVANVVGNPALFDEWKAEMEM-MAGRIKNVRQKLFDSLSAK-DKSGKDWSFILRQIGMFSFTG-----LNKAQ-SDNM  420 (459)
Q Consensus       349 ~~~~~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~-~g~~~~~~~~~~~~g~f~~~~-----l~~~~-~~~l  420 (459)
                      |.++..++.+..+.    +++.+ +++.++++++.+.+.|. + ++. ..+.+..+.+|+|+|+.     ++.+. ++.|
T Consensus       313 ~~a~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~-~~l~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l  386 (444)
T 3if2_A          313 AAIATPLVANDRIK----QLSDNEIKPFYQKQATLAVKLLK-QALGD-YPLMIHKPEGAIFLWLWFKDLPISTLDLYERL  386 (444)
T ss_dssp             HHHHHHHHHTSHHH----HHHHHTHHHHHHHHHHHHHHHHH-HHSSS-SSEEEECCCBSSEEEEEETTCSSCHHHHHHHH
T ss_pred             HHHHHHHHHcCchh----HHHHHHHHHHHHHHHHHHHHHHH-Hhccc-CCceEecCCccEEEEEEcCCCCCCHHHHHHHH
Confidence            88888888776543    33444 67788888888888887 5 320 02566678889999873     34444 4455


Q ss_pred             HhcccEEEcCC----------------C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          421 TNKWHVYMTKD----------------G--RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       421 l~~~gI~v~~g----------------g--Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                       +++||.+.||                +  |||++. +++++++++++|.++++++
T Consensus       387 -~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~~~~~  440 (444)
T 3if2_A          387 -KAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA-DEQTLIDGIKVIGEVVREL  440 (444)
T ss_dssp             -HHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS-CHHHHHHHHHHHHHHHHHH
T ss_pred             -HHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC-CHHHHHHHHHHHHHHHHHH
Confidence             5579998763                2  999998 9999999999999998764

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=100.00  E-value=9.9e-38  Score=303.57  Aligned_cols=313  Identities=16%  Similarity=0.173  Sum_probs=242.5

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      .++.|+|+.+++    ..+ ++|.+.+++.+....  ...| |..|.+++|+++++++..      ++++|++  |+|++
T Consensus        15 ~~~~i~l~~n~~----~~~-~~~~v~~a~~~~~~~--~~~y-~~~~~~~lr~~la~~~~~------~~~~i~~--t~G~~   78 (337)
T 3p1t_A           15 AAQAVCLAFNEN----PEA-VEPRVQAAIAAAAAR--INRY-PFDAEPRVMRKLAEHFSC------PEDNLML--VRGID   78 (337)
T ss_dssp             CCCCEECSSCCC----CSC-CCHHHHHHHHHHGGG--TTSC-CTTHHHHHHHHHHHHHTS------CGGGEEE--ESHHH
T ss_pred             CCCceEeeCCCC----CCC-CCHHHHHHHHHhhhh--hccC-CCCchHHHHHHHHHHhCc------CHHHEEE--eCCHH
Confidence            357899998865    333 379999999988764  3678 678999999999999743      2689999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      ++++++..   .+ +||+|++++|+|..+...++..|++++.+|++  +++++|++.+++.     .+++++++++||||
T Consensus        79 ~~l~~~~~---~~-~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~-----~~~~~v~i~~p~np  147 (337)
T 3p1t_A           79 ECFDRISA---EF-SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLT--DDLLLDPNDLAQV-----SRDDCVVLANPSNP  147 (337)
T ss_dssp             HHHHHHHH---HS-TTSEEEEESSSCSHHHHHHTTSCCEEEEECBC--TTSSBCHHHHTTC-----CTTEEEEEESSCTT
T ss_pred             HHHHHHHH---hc-CCCeEEEeCCCcHHHHHHHHHcCCEEEEecCC--CCCCCCHHHHHhh-----cCCCEEEEeCCCCC
Confidence            99999833   34 99999999999999999999999999999984  4678999998764     25788999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+++.+++.+|   |+++++ +|+||+|+++.+....    .    ....+++++++||||.||++|+|+||+++   
T Consensus       148 tG~~~~~~~l~~l---~~~~~~-~ivDea~~~~~~~~~~----~----~~~~~~~i~~~S~sK~~g~~G~r~G~~~~---  212 (337)
T 3p1t_A          148 TGQALSAGELDQL---RQRAGK-LLIDETYVDYSSFRAR----G----LAYGENELVFRSFSKSYGLAGLRLGALFG---  212 (337)
T ss_dssp             TCCCCCHHHHHHH---HHHCSE-EEEECTTGGGSSCSSS----C----CCCBTTEEEEEESSSTTCCTTTCCEEEEC---
T ss_pred             CCCCCCHHHHHHH---HHhCCc-EEEECCChhhcccccc----c----cccCCCEEEEeeCchhccCcchheEEEEe---
Confidence            9999988876655   566776 5669999988754211    0    12345789999999999999999999865   


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  401 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  401 (459)
                      +++.    .+.+.....  ..+++.++|.++..+|++.+.       +++.++++.++++++.+.|+ ++|    +.+.+
T Consensus       213 ~~~~----~~~l~~~~~--~~~~~~~~~~a~~~~l~~~~~-------~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~  274 (337)
T 3p1t_A          213 PSEL----IAAMKRKQW--FCNVGTLDLHALEAALDNDRA-------REAHIAKTLAQRRRVADALR-GLG----YRVAS  274 (337)
T ss_dssp             CHHH----HHHHHTTSC--TTCSCHHHHHHHHHHHTCHHH-------HHHHHHHHHHHHHHHHHHHH-HTT----CCBCC
T ss_pred             CHHH----HHHHHhhcC--CCCCCHHHHHHHHHHhCCHHH-------HHHHHHHHHHHHHHHHHHHH-HCc----CEECC
Confidence            7774    444444322  336777888888888887432       34555666777899999999 876    57777


Q ss_pred             CCcceeeecCCCHHHHHHHHhcccEEEcCCC--------cEEEccCChhhHHHHHHHHHHHHh
Q 012647          402 RQIGMFSFTGLNKAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       402 ~~~g~f~~~~l~~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e~i~~~~~~l~~~~~  456 (459)
                      ++++++.|...+.+.+..+++++||.+.+|.        |||++  +++++++++++|+++.+
T Consensus       275 ~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~~~~~l~~al~~~~~  335 (337)
T 3p1t_A          275 SEANFVLVENAAGERTLRFLRERGIQVKDAGQFGLHHHIRISIG--REEDNDRLLAALAEYSD  335 (337)
T ss_dssp             CSSSEEEEECTTTHHHHHHHHHTTEECEEGGGGTCCSEEEEECC--CHHHHHHHHHHHHHHTC
T ss_pred             CCCeEEEEEcCCHHHHHHHHHHCCeEEEECccCCCCCeEEEecC--CHHHHHHHHHHHHHHhh
Confidence            7777666655555555556666799999873        99987  68999999999998764

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=100.00  E-value=4.6e-38  Score=309.57  Aligned_cols=337  Identities=14%  Similarity=0.105  Sum_probs=252.1

Q ss_pred             ccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccc
Q 012647           69 PILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLK  148 (459)
Q Consensus        69 ~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~  148 (459)
                      .+.+....+..+ ++++|||+.|.+    ..+ .++.+.+++.+.++.  ...|+ ..|..++|+++++++..      +
T Consensus        11 ~~~~~~~~~~~~-~~~~idl~~~~~----~~~-~~~~v~~a~~~~~~~--~~~y~-~~~~~~l~~~la~~~~~------~   75 (364)
T 1lc5_A           11 NIREPATVLGIS-PDQLLDFSANIN----PLG-MPVSVKRALIDNLDC--IERYP-DADYFHLHQALARHHQV------P   75 (364)
T ss_dssp             CCHHHHHHHTSC-GGGSEECSSCCC----TTC-CCHHHHHHHHHTGGG--GGSCC-CTTCHHHHHHHHHHHTS------C
T ss_pred             cHHHHHHhcCCC-ccceEEeccccC----CCC-CCHHHHHHHHHHHHH--hhcCC-CCCHHHHHHHHHHHHCc------C
Confidence            344444444322 346899999985    333 378899999988754  36774 46899999999999742      2


Q ss_pred             cCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCC
Q 012647          149 EQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG  228 (459)
Q Consensus       149 ~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~  228 (459)
                      +++|++  |+|++++++++.+.   + +||+|+++.|+|..+...++..|++++.+|+++++++.+ ++++.+.+++   
T Consensus        76 ~~~v~~--~~g~~~al~~~~~~---~-~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~~~---  145 (364)
T 1lc5_A           76 ASWILA--GNGETESIFTVASG---L-KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDAILEALTP---  145 (364)
T ss_dssp             GGGEEE--ESSHHHHHHHHHHH---H-CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTTHHHHCCT---
T ss_pred             HHHEEE--CCCHHHHHHHHHHH---c-CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHHHHHhccC---
Confidence            688999  99999999998433   3 789999999999999999999999999999853233333 5666666543   


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc
Q 012647          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (459)
Q Consensus       229 ~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  308 (459)
                      +++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...   .+.+..++++++.||||.+|+
T Consensus       146 ~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~---~~~~~~~~~i~~~s~sK~~~~  220 (364)
T 1lc5_A          146 DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHET--GFI---PALKDNPHIWVLRSLTKFYAI  220 (364)
T ss_dssp             TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCC--CSG---GGCTTCTTEEEEEESTTTTTC
T ss_pred             CCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCcc--chh---hHhccCCCEEEEEECchhhcC
Confidence            567778899999999999999999999999999999999999998876421  111   122345678999999999999


Q ss_pred             CCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012647          309 YAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  388 (459)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  388 (459)
                      +|+|+||++  +.+++.++.+    .....  ..+++.++|.++..+|++.       +++++.+++++++++++.+.|+
T Consensus       221 ~G~r~G~~~--~~~~~~~~~l----~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~  285 (364)
T 1lc5_A          221 PGLRLGYLV--NSDDAAMARM----RRQQM--PWSVNALAALAGEVALQDS-------AWQQATWHWLREEGARFYQALC  285 (364)
T ss_dssp             TTTCCEEEE--CCCHHHHHHH----HHHSC--TTCSCHHHHHHHHHGGGCH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccceEEEE--ECCHHHHHHH----HHhCC--CCCCCHHHHHHHHHHHhCc-------HHHHHHHHHHHHHHHHHHHHHh
Confidence            999999995  2388854444    33222  2367788888888888763       2367888999999999999999


Q ss_pred             hccCCCCCcccccCCcceeeecCCC---HHHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHHHH
Q 012647          389 AKDKSGKDWSFILRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       389 ~~~g~~~~~~~~~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~~~  455 (459)
                       +++   ++.+.++. |.|+|+.+.   .++.+.|++ +||.+.+|        +  |||++  +++++++++++|++++
T Consensus       286 -~~~---~~~~~~~~-g~~~~~~~~~~~~~l~~~l~~-~gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~  357 (364)
T 1lc5_A          286 -QLP---LLTVYPGR-ANYLLLRCEREDIDLQRRLLT-QRILIRSCANYPGLDSRYYRVAIR--SAAQNERLLAALRNVL  357 (364)
T ss_dssp             -TST---TEEECCCS-SSEEEEEESCTTCCHHHHHHT-TTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHC
T ss_pred             -cCC---CCEECCCC-CeEEEEECCCcHHHHHHHHHH-CCcEEeeCcccCCCCCCEEEEEeC--CHHHHHHHHHHHHHHh
Confidence             772   15665554 556666442   255667766 59999875        2  99986  5788999999999988


Q ss_pred             hhc
Q 012647          456 HNV  458 (459)
Q Consensus       456 ~~~  458 (459)
                      +++
T Consensus       358 ~~~  360 (364)
T 1lc5_A          358 TGI  360 (364)
T ss_dssp             ---
T ss_pred             hcc
Confidence            764

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=100.00  E-value=6.5e-42  Score=340.50  Aligned_cols=341  Identities=14%  Similarity=0.069  Sum_probs=265.1

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      +++++|+.|.|    ..++ ++.+.+++.+.+... ...|++.  ..++|+++++++...+|..+++++|++  |+|+++
T Consensus        31 ~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~--~~g~~~  100 (392)
T 3b1d_A           31 PQLLPAWIADM----DFEV-MPEVKQAIHDYAEQL-VYGYTYA--SDELLQAVLDWEKSEHQYSFDKEDIVF--VEGVVP  100 (392)
Confidence            37899999987    4443 788999988877543 3677654  789999999998877777777899999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCC-CCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK-TVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~-~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      ++.++.+.  .+.+||+|+++.|+|..+...++..|++++.+|+++++ ++.+|++.+++.+++  ++++++++++||||
T Consensus       101 a~~~~~~~--~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~--~~~~~v~~~~~~np  176 (392)
T 3b1d_A          101 AISIAIQA--FTKEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVE--NDVKLYLLCNPHNP  176 (392)
Confidence            99998443  36789999999999999999999999999999984332 467999999999873  25667778999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      ||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+... .++++++.||||.+|++|+|+||+++  
T Consensus       177 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~--  252 (392)
T 3b1d_A          177 GGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGH--EHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAII--  252 (392)
Confidence            99999999999999999999999999999999987531  12222222122 46789999999999999999999954  


Q ss_pred             CChhHHHHHHHHHHhhcccc-ccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCcc
Q 012647          321 SSSDLAARVKSQLKRLARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK-DKSGKDWS  398 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~g~~~~~~  398 (459)
                      ++++.++.+..    ..... +.+++.++|.++...|.+.      .+.+++.+++++++++.+.+.|+ + ++   ++.
T Consensus       253 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~l~-~~~~---~~~  318 (392)
T 3b1d_A          253 ENPTLCAQFKH----QQLVNNHHEVSSLGYIATETAYRYG------KPWLVALKAVLEENIQFAVEYFA-QEAP---RLK  318 (392)
Confidence            34454444333    22222 2355777777777777643      13367888999999999999998 6 52   167


Q ss_pred             cccCCcceeeecCCC------HHHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHHHHh
Q 012647          399 FILRQIGMFSFTGLN------KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       399 ~~~~~~g~f~~~~l~------~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~~~~  456 (459)
                      +..+++++++|+.+.      .++.++|++++||.+.||        +  ||+++. +++++++++++|+++++
T Consensus       319 ~~~~~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~e~i~~~l~~l~~~l~  391 (392)
T 3b1d_A          319 VMKPQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAA-PKSLVEEICKRIVCCLP  391 (392)
Confidence            788899999887652      234667765679999886        1  999987 78999999999998875

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=100.00  E-value=1.3e-37  Score=307.01  Aligned_cols=325  Identities=14%  Similarity=0.178  Sum_probs=249.9

Q ss_pred             ceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           85 KLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        85 ~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      .|||+.|++    ..+ .++.+.+++.+.++..  ....|++..+ .++|+++++++...+|..+++++|++  |+|+++
T Consensus        32 ~idl~~~~~----~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~--~~G~~~  103 (369)
T 3cq5_A           32 DIRLNTNEN----PYP-PSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWA--ANGSNE  103 (369)
T ss_dssp             SEECSSCCC----CSC-CCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEE--ESHHHH
T ss_pred             ceeccCCCC----CCC-CCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEE--CCChHH
Confidence            489999987    333 3788999988877541  1367866555 79999999998776666666889999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT  242 (459)
                      +++++.+  ..+.+||+|++++|+|..+...++..|++++.+|.  ++++.+|++.+++++++.  +++++++++|||||
T Consensus       104 al~~~~~--~l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~npt  177 (369)
T 3cq5_A          104 ILQQLLQ--AFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSR--GADFRIDMDVALEEIRAK--QPDIVFVTTPNNPT  177 (369)
T ss_dssp             HHHHHHH--HHCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEEC--CTTSSCCHHHHHHHHHHH--CCSEEEEESSCTTT
T ss_pred             HHHHHHH--HhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecC--CcCCCCCHHHHHHHhhcc--CCCEEEEeCCCCCC
Confidence            9999843  33679999999999999999999999999999997  446789999999999751  34566779999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC-eEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM-ELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       243 G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      |.+++.+++++|++.   +++++|+||+|.++.++   .+..   .+.+..+ +++++.||||.+|++|+|+||+++   
T Consensus       178 G~~~~~~~l~~l~~~---~~~~li~De~~~~~~~~---~~~~---~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~---  245 (369)
T 3cq5_A          178 GDVTSLDDVERIINV---APGIVIVDEAYAEFSPS---PSAT---TLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVA---  245 (369)
T ss_dssp             CCCCCHHHHHHHHHH---CSSEEEEECTTGGGCCS---CCGG---GGTTTCTTTEEEEEESSSTTSCGGGCCEEEEE---
T ss_pred             CCCCCHHHHHHHHHh---CCCEEEEECCchhhcCC---cchH---HHHhhCCCCEEEEEechHhcCCcccceEEEEe---
Confidence            999988776666654   56999999999988753   1111   1223345 789999999999999999999976   


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  401 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  401 (459)
                      +++    +.+.+...... + +++.++|.++..+|++.       +++++.+++++++++++.+.|+ +.|    +++.+
T Consensus       246 ~~~----~~~~l~~~~~~-~-~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~  307 (369)
T 3cq5_A          246 NPA----FIDAVMLVRLP-Y-HLSALSQAAAIVALRHS-------ADTLGTVEKLSVERVRVAARLE-ELG----YAVVP  307 (369)
T ss_dssp             CTH----HHHHHHTTSCT-T-CSCHHHHHHHHHHHHTH-------HHHHTHHHHHHHHHHHHHHHHH-HHT----CEEEC
T ss_pred             CHH----HHHHHHHcCCC-C-CCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHH-hCC----CEECC
Confidence            677    44444443322 2 57788888887777653       2357888999999999999999 776    56664


Q ss_pred             CCcceeeecCC--CHH-HHHHHHhcccEEEcCCC-----cEEEccCChhhHHHHHHHHHHHHhh
Q 012647          402 RQIGMFSFTGL--NKA-QSDNMTNKWHVYMTKDG-----RISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       402 ~~~g~f~~~~l--~~~-~~~~ll~~~gI~v~~gg-----Ris~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                      + .|.|+|+.+  +.+ +.+.|. ++||.+.+||     ||+++  +++++++++++|+++++.
T Consensus       308 ~-~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~~~~~~~iRis~~--~~~~i~~~~~~l~~~~~~  367 (369)
T 3cq5_A          308 S-ESNFVFFGDFSDQHAAWQAFL-DRGVLIRDVGIAGHLRTTIG--VPEENDAFLDAAAEIIKL  367 (369)
T ss_dssp             C-SSSEEEEECCSSHHHHHHHHH-HTTEECBCCSCTTEEEEECC--CHHHHHHHHHHHHHHHTT
T ss_pred             C-CCeEEEEECCCCHHHHHHHHH-HCCEEEEECCCCCeEEEEeC--CHHHHHHHHHHHHHHHhc
Confidence            4 456777654  343 455554 5799999973     99987  789999999999998753

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=100.00  E-value=2.7e-37  Score=303.35  Aligned_cols=322  Identities=15%  Similarity=0.159  Sum_probs=250.9

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      ++++|||+.|.+    ..+ +++.+.+++.+.++.  ...| +..+..++|+++++++..      ++++|++  |+|++
T Consensus        25 ~~~~idl~~~~~----~~~-~~~~v~~a~~~~~~~--~~~y-~~~~~~~l~~~la~~~~~------~~~~i~~--~~g~t   88 (361)
T 3ftb_A           25 GRELLDYSSNIN----PLG-IPKSFLNNIDEGIKN--LGVY-PDVNYRRLNKSIENYLKL------KDIGIVL--GNGAS   88 (361)
T ss_dssp             ---CEETTCCCC----TTC-SCHHHHTTHHHHHHG--GGSC-CCTTCHHHHHHHHHHHTC------CSCEEEE--ESSHH
T ss_pred             CCCEEEecCCCC----CCC-CCHHHHHHHHHHHHH--hcCC-CCccHHHHHHHHHHHhCC------CcceEEE--cCCHH
Confidence            468999999976    333 378999999888765  3567 667899999999999842      3789999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      ++++++.+   .+   |+|+++.|+|..+...++..|++++.+|++  .+.+++++++++++++    ++++++++||||
T Consensus        89 ~al~~~~~---~~---d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~l~~~l~~----~~~v~i~~p~np  156 (361)
T 3ftb_A           89 EIIELSIS---LF---EKILIIVPSYAEYEINAKKHGVSVVFSYLD--ENMCIDYEDIISKIDD----VDSVIIGNPNNP  156 (361)
T ss_dssp             HHHHHHHT---TC---SEEEEEESCCTHHHHHHHHTTCEEEEEECC--TTSCCCHHHHHHHTTT----CSEEEEETTBTT
T ss_pred             HHHHHHHH---Hc---CcEEEecCChHHHHHHHHHcCCeEEEeecC--cccCCCHHHHHHhccC----CCEEEEeCCCCC
Confidence            99999833   23   999999999999999999999999999985  3456888999998874    567778999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+++.+++++|+++|++||+++|+||+|.++.++ ...   +........+++++++|+||.+|++|+|+||++  +.
T Consensus       157 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~~---~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~--~~  230 (361)
T 3ftb_A          157 NGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PSS---SFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGI--TN  230 (361)
T ss_dssp             TTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-TTS---SSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEE--ES
T ss_pred             CCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-ccc---chhHhcccCCCEEEEeeChhhcCCCCcceeEEE--eC
Confidence            999999999999999999999999999999988864 111   111223455788999999999999999999984  35


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcc-cc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWS-FI  400 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~~  400 (459)
                      +++    +.+.+.....  ..+++.+++.++...|++.       +.+++.+++++++++++.+.|+ +++   ++. +.
T Consensus       231 ~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~-~~~---~~~~~~  293 (361)
T 3ftb_A          231 NKE----IAAKIKAKQN--PWNINCFAEMAAINCLKDT-------NYIEESLLWIKKERKRFIEELN-KIG---FIKRVF  293 (361)
T ss_dssp             CHH----HHHHHHTTSC--TTCSCHHHHHHHHHTSSCH-------HHHHHHHHHHHHHHHHHHHHHH-HSS---SEEEEE
T ss_pred             CHH----HHHHHHhhCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHH-hCC---CCceec
Confidence            777    4444444333  2367788888888888863       3367889999999999999999 873   156 55


Q ss_pred             cCCcceeeecCC---CH-HHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          401 LRQIGMFSFTGL---NK-AQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       401 ~~~~g~f~~~~l---~~-~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      .+.++ |+|+.+   +. ++.+.|.++ ||.+.+|        +  |||++  +++++++++++|+++.+.+
T Consensus       294 ~~~~~-~~~~~~~~~~~~~l~~~l~~~-gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~~l  361 (361)
T 3ftb_A          294 SPHAN-FVLCRLENISGEKLYDSLLKE-DIVIRRCCNFIGLDDSFVRFAIK--DEKKNTKFLRALKGVENNL  361 (361)
T ss_dssp             CCSSS-EEEEEESSSCHHHHHHHHHTT-TEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCe-EEEEEcCCCCHHHHHHHHHHC-CeEEeeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHhcC
Confidence            66554 555543   34 456666664 9999885        2  99987  6788899999998887653

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=100.00  E-value=8.6e-37  Score=300.01  Aligned_cols=316  Identities=15%  Similarity=0.138  Sum_probs=239.8

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      +++|+|+.|++    ..++ ++.+.+++.+.+...  ....|+ ..+..++|+++++++.      +++++|++  |+|+
T Consensus        26 ~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~~~y~-~~~~~~lr~~la~~~g------~~~~~i~~--t~g~   91 (360)
T 3hdo_A           26 ASWIKLNTNEN----PYPP-SPEVVKAILEELGPDGAALRIYP-SASSQKLREVAGELYG------FDPSWIIM--ANGS   91 (360)
T ss_dssp             TTSEECSSCCC----SSCC-CHHHHHHHHHHHTTTCGGGGSCC-CSSCHHHHHHHHHHHT------CCGGGEEE--ESSH
T ss_pred             cceeeccCCCC----CCCC-CHHHHHHHHHHHhcccchhhcCC-CCchHHHHHHHHHHhC------cCcceEEE--cCCH
Confidence            57999999987    4443 899999999988653  125674 4577999999999984      33789999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      +++++++.+  ..+.+||+|++++|+|..+...++..|++++.+|++  +++.+  +++++.+     +++++++++|||
T Consensus        92 ~~al~~~~~--~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~--~~~~~--~~l~~~~-----~~~~v~i~~p~n  160 (360)
T 3hdo_A           92 DEVLNNLIR--AFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLT--GDFRI--AGFPERY-----EGKVFFLTTPNA  160 (360)
T ss_dssp             HHHHHHHHH--HHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECBC--TTSSB--TTCCSSB-----CSSEEEEESSCT
T ss_pred             HHHHHHHHH--HHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCC--CCCCH--HHHHhhc-----CCCEEEEeCCCC
Confidence            999999843  346799999999999999999999999999999984  33444  4443322     234777899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      |||.+++.++   |.++|+++|+++|+||+|.++...    ...   .+.+..++++++.||||.+|++|+|+||+++  
T Consensus       161 ptG~~~~~~~---l~~l~~~~~~~li~De~~~~~~~~----~~~---~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~--  228 (360)
T 3hdo_A          161 PLGPSFPLEY---IDELARRCAGMLVLDETYAEFAES----NAL---ELVRRHENVVVTRTLSKSYSLAGMRIGLAIA--  228 (360)
T ss_dssp             TTCCCCCHHH---HHHHHHHBSSEEEEECTTGGGSSC----CCT---HHHHHCSSEEEEEESTTTTSCTTSCCEEEEC--
T ss_pred             CCCCCcCHHH---HHHHHHHCCCEEEEECChHhhCCc----chh---HHhccCCCEEEEecchHhhcCCccceeeEee--
Confidence            9999988876   555667899999999999987432    111   2234567899999999999999999999865  


Q ss_pred             CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012647          321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  400 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  400 (459)
                       +++..+.+    ......  .+++.++|.++...|++.+       .+++.+++++++++++.+.|+ ++|    +.+.
T Consensus       229 -~~~~~~~~----~~~~~~--~~~~~~~~~a~~~~l~~~~-------~~~~~~~~~~~~~~~l~~~L~-~~~----~~~~  289 (360)
T 3hdo_A          229 -RPEVIAAL----DKIRDH--YNLDRLAQAACVAALRDQA-------YLSECCRRIRETREWFTTELR-SIG----YDVI  289 (360)
T ss_dssp             -CHHHHHHH----HHHSCS--CCSCHHHHHHHHHHHHCHH-------HHHHHHHHHHHHHHHHHHHHH-HTT----CEEC
T ss_pred             -CHHHHHHH----HHhCCC--CCCCHHHHHHHHHHhcCHH-------HHHHHHHHHHHHHHHHHHHHH-HCC----CEEc
Confidence             77744443    333222  3678888888888877642       357888999999999999999 876    5666


Q ss_pred             cCCcceeeecC---CCHHHHHHHHhcccEEEcCCC--------cEEEccCChhhHHHHHHHHHHHHhh
Q 012647          401 LRQIGMFSFTG---LNKAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       401 ~~~~g~f~~~~---l~~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                      ++. +.|+|+.   .+.+.+...+.++||.+.+++        |||++  +++++++++++|+++.+.
T Consensus       290 ~~~-~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~--~~~e~~~l~~al~~~~~~  354 (360)
T 3hdo_A          290 PSQ-GNYLFATPPDRDGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG--TREEMEQTLAALKEIGEG  354 (360)
T ss_dssp             CCS-SSEEEEECTTCCHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC--CHHHHHHHHHHHHHHHC-
T ss_pred             CCC-ccEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHhcc
Confidence            555 4566653   344444444445799998853        99987  789999999999987653

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=100.00  E-value=5e-39  Score=319.50  Aligned_cols=323  Identities=14%  Similarity=0.108  Sum_probs=237.7

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHh--hc-CCCCCCCCCccc-----HHHHHHHHHHHhcCCCCcccc-Cce
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLML--ER-GENKEYLPIEGL-----AAFNKVTAELLFGADNSVLKE-QRV  152 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~--~~-~~~~~Y~~~~g~-----~~lr~aia~~l~~~~~~~~~~-~~i  152 (459)
                      ++++|+|+.|.|    .++. ++.+.+++.+..  .. ....+|++..|.     ++||+++|+++. .+|..+++ ++|
T Consensus        21 ~~~~i~l~~g~p----~~~~-~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~i   94 (391)
T 3bwn_A           21 SDFVVNLDHGDP----TAYE-EYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDRYI   94 (391)
T ss_dssp             TTSCEECSSCCC----GGGH-HHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSSEE
T ss_pred             CCCeeEcCCCCC----CCCC-CHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCCeE
Confidence            467899999998    3443 556666553322  11 123679999998     999999999986 56777767 589


Q ss_pred             EEeecccchhHHHHHHHHHHHhCCCC----EEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCC
Q 012647          153 ATVQGLSGTGSLRLAAALIERYFPGA----KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG  228 (459)
Q Consensus       153 ~~~~t~ggt~a~~l~~~~~~~~~~gd----~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~  228 (459)
                      ++  |+|++++++++...  .+.+||    +|++++|+|..|...++..|++++.++++. +  +++        .   +
T Consensus        95 ~~--t~G~~~al~~~~~~--l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-~--~l~--------~---~  156 (391)
T 3bwn_A           95 VV--GTGSTQLCQAAVHA--LSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDA-W--GFD--------K---K  156 (391)
T ss_dssp             EE--EEHHHHHHHHHHHH--HHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEES-T--TCC--------C---C
T ss_pred             EE--eCChHHHHHHHHHH--hcCCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecCCH-H--HcC--------C---C
Confidence            99  99999999998443  367999    999999999999999999999999999853 2  222        1   2


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc
Q 012647          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (459)
Q Consensus       229 ~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  308 (459)
                      +++++++++||||||.+++     +|++.+++++++||+||+|.. .  .    ...+   ....+++++++||||.||+
T Consensus       157 ~~k~v~l~~p~NPtG~~~~-----~l~~~~~~~~~~ii~De~y~~-~--~----~~~l---~~~~~~~i~~~S~SK~~g~  221 (391)
T 3bwn_A          157 GPYIELVTSPNNPDGTIRE-----TVVNRPDDDEAKVIHDFAYYW-P--H----YTPI---TRRQDHDIMLFTFSKITGH  221 (391)
T ss_dssp             SCEEEEEESSCTTTCCCCC-----CCC-----CCCEEEEECTTCS-T--T----TSCC---CCCBCCSEEEEEHHHHHSC
T ss_pred             CCEEEEECCCCCCCchhHH-----HHHHHhhcCCCEEEEeCCCCC-C--C----CCcc---ccCCCCeEEEEechhhcCC
Confidence            6788888999999999996     354422223499999999973 1  1    0111   1134689999999999999


Q ss_pred             CCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHH-------HHHHHHHHHHHHHHHH
Q 012647          309 YAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEW-------KAEMEMMAGRIKNVRQ  381 (459)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~-------~~~~~~~~~~~~~~~~  381 (459)
                      +|+|+||++  ++++++++.+..    .......+++.++|.++..+|+++.   .|       .++++++++.++++++
T Consensus       222 ~GlRiG~~~--~~~~~l~~~l~~----~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  292 (391)
T 3bwn_A          222 AGSRIGWAL--VKDKEVAKKMVE----YIIVNSIGVSKESQVRTAKILNVLK---ETCKSESESENFFKYGREMMKNRWE  292 (391)
T ss_dssp             GGGCEEEEE--ECCHHHHHHHHH----HHHHHHSSCCHHHHHHHHHHHHHHH---HHTTCCCTTTSHHHHHHHHHHHHHH
T ss_pred             CccceEEEE--ecCHHHHHHHHH----HhcccccCCCHHHHHHHHHHHhCcc---hhccccccHHHHHHHHHHHHHHHHH
Confidence            999999984  456775544443    3222334788899999988886542   11       3457899999999999


Q ss_pred             HHHHHHhhccCCCCCccccc-------------CCcceeeecCCC-HHHHHHHHhcccEEEcCC-------C--cEEEcc
Q 012647          382 KLFDSLSAKDKSGKDWSFIL-------------RQIGMFSFTGLN-KAQSDNMTNKWHVYMTKD-------G--RISLAG  438 (459)
Q Consensus       382 ~l~~~L~~~~g~~~~~~~~~-------------~~~g~f~~~~l~-~~~~~~ll~~~gI~v~~g-------g--Ris~~~  438 (459)
                      .+.+.|+ +++   ++.+..             +++|+|+|+++. .+++..+++++||.+.||       +  |||++.
T Consensus       293 ~l~~~L~-~~~---~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~~  368 (391)
T 3bwn_A          293 KLREVVK-ESD---AFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEETDLVSELRRHKVMSRAGERCGSDKKHVRVSMLS  368 (391)
T ss_dssp             HHHHHHH-TCS---SEECCCCCCEEETTTTEEECCCCSEEEEEESSSCCHHHHHHHTTEECEEGGGGTCCTTEEEEESCS
T ss_pred             HHHHHHH-hCC---CcccccCCccccccccccCCCcceEEEecCCcHHHHHHHHHHCCEEEccCCCCCCCCCEEEEEecC
Confidence            9999999 762   134432             356678998764 345667777789999985       2  999998


Q ss_pred             CChhhHHHHHHHHHHHHhh
Q 012647          439 LSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       439 ~~~e~i~~~~~~l~~~~~~  457 (459)
                       +++++++++++|++++++
T Consensus       369 -~~e~i~~~~~~L~~~~~~  386 (391)
T 3bwn_A          369 -REDVFNVFLERLANMKLI  386 (391)
T ss_dssp             -CHHHHHHHHHHHHSCC--
T ss_pred             -CHHHHHHHHHHHHHHHHh
Confidence             899999999999987754

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=100.00  E-value=2.8e-37  Score=300.50  Aligned_cols=309  Identities=16%  Similarity=0.165  Sum_probs=238.1

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      ++.|+|+.|.+    ..+ .++.+.+++.+.+.......|+ ..+.+++|+++++++...   .+++++|++  |+|+++
T Consensus        19 ~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~~~~~~y~-~~~~~~lr~~la~~~~~~---~~~~~~v~~--~~G~~~   87 (335)
T 1uu1_A           19 RDKTYLALNEN----PFP-FPEDLVDEVFRRLNSDALRIYY-DSPDEELIEKILSYLDTD---FLSKNNVSV--GNGADE   87 (335)
T ss_dssp             CCSEEESSCCC----SSC-CCHHHHHHHHHTCCGGGGGSCC-CSSCHHHHHHHHHHHTCS---SCCGGGEEE--ESSHHH
T ss_pred             CcceECCCCCC----CCC-CCHHHHHHHHHHhhhhhhhcCC-CCchHHHHHHHHHHcCCC---CCCHHHEEE--cCChHH
Confidence            36899999986    333 3889999999887322235674 457999999999998643   344789999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT  242 (459)
                      +++++.+   .+  ||+|+++ |+|..+...++..|++++.+|++  +++.+|++++     +   +++++++++|||||
T Consensus        88 al~~~~~---~~--gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l-----~---~~~~v~l~~p~npt  151 (335)
T 1uu1_A           88 IIYVMML---MF--DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLT--KDLRIPEVNV-----G---EGDVVFIPNPNNPT  151 (335)
T ss_dssp             HHHHHHH---HS--SEEEECS-SSCHHHHHHHHHHTCEEEECCCC--TTSCCCCCCC-----C---TTEEEEEESSCTTT
T ss_pred             HHHHHHH---Hh--CCcEEEC-CCcHHHHHHHHHcCCeEEEeccC--CCCCCCHHHc-----C---CCCEEEEeCCCCCC
Confidence            9999833   34  8999999 99999999999999999999983  4578888877     2   57788889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCC
Q 012647          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (459)
Q Consensus       243 G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (459)
                      |.+++.+++++|+++|   | ++|+||+|.++...+    ..   .+.+..+++++++||||.+|++|+|+||+++   +
T Consensus       152 G~~~~~~~l~~l~~~~---~-~li~De~~~~~~~~~----~~---~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~---~  217 (335)
T 1uu1_A          152 GHVFEREEIERILKTG---A-FVALDEAYYEFHGES----YV---DFLKKYENLAVIRTFSKAFSLAAQRVGYVVA---S  217 (335)
T ss_dssp             CCCCCHHHHHHHHHTT---C-EEEEECTTHHHHCCC----CG---GGGGTCSSEEEEEESTTTTTCGGGCCEEEEE---C
T ss_pred             CCCCCHHHHHHHHHhC---C-EEEEECcchhhcchh----HH---HHhhhCCCEEEEecchhhcCCcccCeEEEEe---C
Confidence            9999999999988877   7 899999998876421    11   1234456899999999999999999999976   8


Q ss_pred             hhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC
Q 012647          323 SDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR  402 (459)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~  402 (459)
                      ++.++.+    ...... + +++.++|.++..+|++.+       ++++.+++++++++++.+.|+ ++|    +.+. +
T Consensus       218 ~~~~~~l----~~~~~~-~-~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~-~  278 (335)
T 1uu1_A          218 EKFIDAY----NRVRLP-F-NVSYVSQMFAKVALDHRE-------IFEERTKFIVEERERMKSALR-EMG----YRIT-D  278 (335)
T ss_dssp             HHHHHHH----HHHSCT-T-CSCHHHHHHHHHHHHTHH-------HHHHHHHHHHHHHHHHHHHHH-HHT----CCBC-C
T ss_pred             HHHHHHH----HHhcCC-C-CcCHHHHHHHHHHhCCHH-------HHHHHHHHHHHHHHHHHHHHH-HCC----cEEc-C
Confidence            8844443    333222 3 678888888888886532       356778889999999999999 776    4544 4


Q ss_pred             CcceeeecCCC---H-HHHHHHHhcccEEEcCCC---cEEEccCChhhHHHHHHHHHHH
Q 012647          403 QIGMFSFTGLN---K-AQSDNMTNKWHVYMTKDG---RISLAGLSLAKCEYLADAIIDS  454 (459)
Q Consensus       403 ~~g~f~~~~l~---~-~~~~~ll~~~gI~v~~gg---Ris~~~~~~e~i~~~~~~l~~~  454 (459)
                      .+++|+|+.+.   . ++.+.|.+ +||.+.++.   |||++  +++++++++++|+++
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~iRis~~--~~~~i~~~~~~l~~~  334 (335)
T 1uu1_A          279 SRGNFVFVFMEKEEKERLLEHLRT-KNVAVRSFREGVRITIG--KREENDMILRELEVF  334 (335)
T ss_dssp             CCSSEEEEECCTHHHHHHHHHHHH-HTEEEEEETTEEEEECC--CHHHHHHHHHHHHCC
T ss_pred             CCCeEEEEECCCCCHHHHHHHHHH-CCEEEEECCCeEEEEeC--CHHHHHHHHHHHHhh
Confidence            45778887664   2 34556665 699998753   99986  467899999998754

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=100.00  E-value=1.1e-37  Score=313.14  Aligned_cols=327  Identities=11%  Similarity=0.066  Sum_probs=246.2

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhh-cCC-CCCCCCCc-c---cHHHHHHHHHHHhcCCCCccccCceEEee
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE-RGE-NKEYLPIE-G---LAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~-~~~-~~~Y~~~~-g---~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (459)
                      +.+|+|+.|+|    .+++ ++.+.+++.+.+. .+. ...|++.. |   .++||++|++++...++..+++++|++  
T Consensus        56 ~~~i~l~~g~~----~~~~-~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~--  128 (427)
T 2hox_A           56 GCSADVASGDG----LFLE-EYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVF--  128 (427)
T ss_dssp             TCCEECCSCCC----GGGH-HHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEE--
T ss_pred             CceEEecCcCC----CCCC-CHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEE--
Confidence            47899999998    3443 6788888887763 222 13498888 9   999999999999876666677899999  


Q ss_pred             cccchhHHHHHHHHHHH--------hCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCC
Q 012647          157 GLSGTGSLRLAAALIER--------YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG  228 (459)
Q Consensus       157 t~ggt~a~~l~~~~~~~--------~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~  228 (459)
                      |+|++++++++  +...        +.+||+|++++|+|..|...++..|++++.+.        +|++.|++++++   
T Consensus       129 t~G~~~al~~~--~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~--------~d~~~l~~~~~~---  195 (427)
T 2hox_A          129 GVGVTQLIHGL--VISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWA--------GNAANYVNVSNP---  195 (427)
T ss_dssp             ESHHHHHHHHH--HHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEEE--------EEGGGGTTCSCG---
T ss_pred             eCCHHHHHHHH--HHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeeeec--------CCHHHHHHhhcC---
Confidence            99999999998  4444        67999999999999999999999999987543        467788777754   


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc
Q 012647          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (459)
Q Consensus       229 ~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  308 (459)
                      +++++++++||||||.+++ +.       ++  ++..+.|++|.+ ..       .++..+ . .+++++++||||.+|+
T Consensus       196 ~~k~v~l~~p~NPtG~~~~-~~-------l~--~~~~i~d~~~~~-~~-------~s~~~~-~-~~~~i~~~S~SK~~g~  255 (427)
T 2hox_A          196 EQYIEMVTSPNNPEGLLRH-AV-------IK--GCKSIYDMVYYW-PH-------YTPIKY-K-ADEDILLFTMSKFTGH  255 (427)
T ss_dssp             GGEEEEEESSCTTTCCCCC-CS-------ST--TCEEEEECTTCS-TT-------TSCCCS-C-BCCSEEEEEHHHHTSC
T ss_pred             CceEEEEcCCCCCcccccH-HH-------Hc--CCCEEEeecccC-CC-------CCcccc-C-CCceEEEEeChhcCCC
Confidence            6788888999999999999 42       22  566778877643 10       111111 1 4689999999999999


Q ss_pred             CCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChh-hHH----HHHHHHHHHHHHHHHHHHHH
Q 012647          309 YAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPA-LFD----EWKAEMEMMAGRIKNVRQKL  383 (459)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~----~~~~~~~~~~~~~~~~~~~l  383 (459)
                      +|+|+||+++  +++++++.+..    .......+++.++|.++..+|++.. +.+    .|++++++.+++++++++++
T Consensus       256 ~G~RiG~~~~--~~~~l~~~l~~----~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  329 (427)
T 2hox_A          256 SGSRFGWALI--KDESVYNNLLN----YMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNI  329 (427)
T ss_dssp             GGGCCEEEEE--CCHHHHHHHHH----HHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEE--CCHHHHHHHHH----HHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHH
Confidence            9999999954  45775554443    3333345788999998888886531 110    12356778899999999999


Q ss_pred             HHHHhhcc-CC-------CC---CcccccCCcceeeecCCC---HHHHHHHHhcccEEEcCC-------C--cEEEccCC
Q 012647          384 FDSLSAKD-KS-------GK---DWSFILRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKD-------G--RISLAGLS  440 (459)
Q Consensus       384 ~~~L~~~~-g~-------~~---~~~~~~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~g-------g--Ris~~~~~  440 (459)
                      .+.|+ ++ |+       |.   .+.+..|++|+|+|+++.   .++++.+++++||.++||       +  |||++. +
T Consensus       330 ~~~L~-~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~~-~  407 (427)
T 2hox_A          330 TALLD-QSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIK-T  407 (427)
T ss_dssp             HHHHT-TSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSS-C
T ss_pred             HHHHH-hCcCccccccccccccccccccCCCCceEEEEECCCcHHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEecC-C
Confidence            99999 76 32       11   033456778999998774   346788887789999986       2  999998 8


Q ss_pred             hhhHHHHHHHHHHHHhh
Q 012647          441 LAKCEYLADAIIDSYHN  457 (459)
Q Consensus       441 ~e~i~~~~~~l~~~~~~  457 (459)
                      ++++++++++|++++++
T Consensus       408 ~e~l~~~l~~l~~~~~~  424 (427)
T 2hox_A          408 QDDFDQLMYYLKDMVKA  424 (427)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999999998864

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=100.00  E-value=9.9e-36  Score=291.21  Aligned_cols=312  Identities=13%  Similarity=0.117  Sum_probs=236.0

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      +++|||+.|.+    ..+ .++.+.+++.+.+..  ...|++..+ +++|+++++++.      +++++|++  |+|+++
T Consensus        15 ~~~id~~~~~~----~~~-~~~~v~~a~~~~~~~--~~~y~~~~~-~~lr~~la~~~~------~~~~~i~~--t~g~~~   78 (350)
T 3fkd_A           15 SEIVNFSTTVW----TDG-DKDHLEKHLVENLNC--IRHYPEPDA-GTLRQMLAKRNS------VDNNAILV--TNGPTA   78 (350)
T ss_dssp             -CCEECSCCSC----CCS-CCHHHHHHHHHTGGG--GGSCCCTTC-HHHHHHHHHHTT------CCGGGEEE--ESHHHH
T ss_pred             ccEEEccCCCC----CCC-CCHHHHHHHHHhHhH--HhcCCCCcH-HHHHHHHHHHhC------cCHHHEEE--cCCHHH
Confidence            68999999986    444 388999999888733  367876666 899999999974      23789999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeee-ecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRY-YDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~-~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      +++++.+.   +. ||+|+++.|+|..+...++..|++++.+|+ ++.  .++++        +   +++++++++||||
T Consensus        79 al~~~~~~---l~-gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~--~~~~~--------~---~~~~v~i~~p~np  141 (350)
T 3fkd_A           79 AFYQIAQA---FR-GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDI--GEADF--------S---NMDFCWLCNPNNP  141 (350)
T ss_dssp             HHHHHHHH---TT-TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCG--GGSCC--------T---TCSEEEEESSCTT
T ss_pred             HHHHHHHH---HC-CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCcc--ccCcc--------C---CCCEEEEeCCCCC
Confidence            99998433   34 999999999999999999999999999998 432  23443        2   5667778999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+++.+++++|++.|+++  ++|+||+|.++.+.+..  . .  ...+..+++++++||||.+|++|+|+||+++   
T Consensus       142 tG~~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~--~-~--~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~---  211 (350)
T 3fkd_A          142 DGRLLQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVI--R-P--ADIKGRKNLVMVYSFSHAYGIPGLRIGYIVA---  211 (350)
T ss_dssp             TCCCCCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCC--C-G--GGGTTCSSEEEEEESHHHHSCGGGCCEEEEC---
T ss_pred             cCCCCCHHHHHHHHHhCCCC--EEEEECchhhhccCcch--h-h--HHhhcCCCEEEEecCchhccCcchheEeEEe---
Confidence            99999999999999988765  99999999998865321  1 1  2234567899999999999999999999965   


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPA-LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  400 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  400 (459)
                      +++    +.+.+.....  ..+++.++|.++..+|++.+ +.       ++.++.. ++++++.+.|+ +++   ++.+.
T Consensus       212 ~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~-~~~~~l~~~L~-~~~---~~~~~  273 (350)
T 3fkd_A          212 NKD----FMKRVAAFST--PWAVNALAIEAAKFILIHPAQFT-------LPIRKWQ-RNTVDFITALN-RLD---GVEVH  273 (350)
T ss_dssp             CHH----HHHHHHTTCC--TTCSCHHHHHHHHHHHHCTTTTC-------CCHHHHH-HHHHHHHHHHH-HST---TEEEC
T ss_pred             CHH----HHHHHHHhCC--CCCCCHHHHHHHHHHHhCHHHHH-------HHHHHHH-HHHHHHHHHHh-cCC---CcEEC
Confidence            888    4444444332  23678888888888887654 32       2333333 78889999998 772   15665


Q ss_pred             cCCcceeeecCC---C-HHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          401 LRQIGMFSFTGL---N-KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       401 ~~~~g~f~~~~l---~-~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      ++. +.|+|+.+   + .++.++|++++||.+.+|.          |||++  +++++++++++|++++++.
T Consensus       274 ~~~-~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~~~~  342 (350)
T 3fkd_A          274 PSG-TTFFLLRLKKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ--RPAQNQLFIKALETFLEKY  342 (350)
T ss_dssp             CCS-SSEEEEEESSSCHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHTC-
T ss_pred             CCC-CcEEEEECCCCCHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHHHh
Confidence            555 44555433   3 3556777775799998862          99987  6788999999999988753

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=100.00  E-value=3.5e-33  Score=277.95  Aligned_cols=329  Identities=11%  Similarity=0.028  Sum_probs=240.6

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +++.|||+.|.|.   +.+ .++.+.+++.+.+...  ....|.+..|..++++++++++....+    .+++++  |+|
T Consensus        42 g~~~idl~~~~~~---~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g----~~~v~~--~~g  111 (398)
T 3a2b_A           42 GRRVLMFGSNSYL---GLT-TDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVG----KEAAIL--FST  111 (398)
T ss_dssp             TEEEEECSCSCTT---CGG-GCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT----CSEEEE--ESS
T ss_pred             CceEEEeeccccc---CCC-CCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhC----CCcEEE--ECC
Confidence            3568999999761   332 3788999988877532  123455667777777777777665544    257888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCC-CcEEEEeCCC
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG-GSFILLHGCA  238 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~-~~~~ii~~~p  238 (459)
                      |++++.++.  ...+.+||+|++++|+|..+...++..|++++.+|+       +|++.+++.+++..+ +++++++++|
T Consensus       112 gt~a~~~~~--~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~~~~~~v~~~~~  182 (398)
T 3a2b_A          112 GFQSNLGPL--SCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGH-------NNMEDLRAKLSRLPEDSAKLICTDGI  182 (398)
T ss_dssp             HHHHHHHHH--HHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEESB
T ss_pred             HHHHHHHHH--HHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCC-------CCHHHHHHHHHhhccCCceEEEEeCC
Confidence            999999983  334679999999999999999999999999998875       589999999986322 5788889999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe-EEEEEcCCcCcccCCCCcceEE
Q 012647          239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME-LLVAQSYSKNLGLYAERIGAMN  317 (459)
Q Consensus       239 ~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~S~SK~~~~~G~RiG~~~  317 (459)
                      |||||.+++   +++|.++|++||+++|+||+|..+.++.   ...++....+..++ +++++||||.++++|   ||++
T Consensus       183 ~nptG~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~---~~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~  253 (398)
T 3a2b_A          183 FSMEGDIVN---LPELTSIANEFDAAVMVDDAHSLGVIGH---KGAGTASHFGLNDDVDLIMGTFSKSLASLG---GFVA  253 (398)
T ss_dssp             CTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSG---GGCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEE
T ss_pred             CCCCCCccC---HHHHHHHHHHcCcEEEEECCCcccccCC---CCCchHhhcCCCcCCeEEEecccccccCCC---cEEE
Confidence            999999965   7889999999999999999998876531   11122122222234 699999999999888   9986


Q ss_pred             EEeCChhHHHHHHHHHHhhccccccCCchHHHHH-HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 012647          318 VVCSSSDLAARVKSQLKRLARPMYSNPPVHGARI-VANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKD  396 (459)
Q Consensus       318 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~  396 (459)
                      +   +++.++.+......   ....+.+...|.+ +...|++.       +++++.+++++++++++.+.|+ ++|    
T Consensus       254 ~---~~~~~~~l~~~~~~---~~~~~~~~~~~~a~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~-~~g----  315 (398)
T 3a2b_A          254 G---DADVIDFLKHNARS---VMFSASMTPASVASTLKALEII-------QNEPEHIEKLWKNTDYAKAQLL-DHG----  315 (398)
T ss_dssp             E---CHHHHHHHHHHCHH---HHSSBCCCHHHHHHHHHHHHHH-------HHCTHHHHHHHHHHHHHHHHHH-HTT----
T ss_pred             e---CHHHHHHHHHhccc---ceecCCCCHHHHHHHHHHHHHH-------hhCHHHHHHHHHHHHHHHHHHH-hcC----
Confidence            6   77755554432111   1222344445543 33444321       2356788999999999999999 876    


Q ss_pred             cccccCCcceeeecCCC-----HHHHHHHHhcccEEEcCC---------C--cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          397 WSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD---------G--RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       397 ~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g---------g--Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                      +++..+. |+|+|+.+.     .++.++|+++ ||.+.++         +  ||+++. .+++++++++++|+++++++
T Consensus       316 ~~~~~~~-g~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~  392 (398)
T 3a2b_A          316 FDLGATE-SPILPIFIRSNEKTFWVTKMLQDD-GVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQA  392 (398)
T ss_dssp             CCBCSCC-SSEEEEECCCHHHHHHHHHHHHHT-TEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCcCCCC-CCEEEEEcCCHHHHHHHHHHHHHC-CcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence            5666666 577777653     2446677775 9999875         2  999986 48999999999999998764

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=100.00  E-value=4.7e-32  Score=271.31  Aligned_cols=327  Identities=12%  Similarity=0.079  Sum_probs=237.6

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcC------CCCCCCC--CcccHHHHHHHHHHHhcCCCCccccCceEE
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG------ENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVAT  154 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~------~~~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (459)
                      +++|+|+.|.+    +  +.++.+.+++.+.+...      ..+.|++  ..+.+++|+++++++...     +++++++
T Consensus        27 ~~~i~l~~~~~----~--~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~-----~~~~v~~   95 (420)
T 1t3i_A           27 HPLVYLDNAAT----S--QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINAR-----SPREIVY   95 (420)
T ss_dssp             EECEECBTTTC----C--CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCS-----CGGGEEE
T ss_pred             CceEEecCCcc----C--CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCC-----CCCeEEE
Confidence            34899999987    3  24789999998887541      1234543  477899999999997542     2688999


Q ss_pred             eecccchhHHHHHHHHHH--HhCCCCEEEEcCCCCcc----hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCC
Q 012647          155 VQGLSGTGSLRLAAALIE--RYFPGAKVLISSPTWGN----HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG  228 (459)
Q Consensus       155 ~~t~ggt~a~~l~~~~~~--~~~~gd~Vlv~~p~y~~----~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~  228 (459)
                        |+||+++++++...+.  .+.+||+|++++|+|..    +...++..|++++.+|++  +++.+|++.+++++++   
T Consensus        96 --~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~---  168 (420)
T 1t3i_A           96 --TRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLD--EQESFDLEHFKTLLSE---  168 (420)
T ss_dssp             --ESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBC--TTSSBCHHHHHHHCCT---
T ss_pred             --cCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccC--CCCCcCHHHHHHhhCC---
Confidence              9999999999844331  15799999999999998    566777889999999984  4677999999999975   


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc
Q 012647          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (459)
Q Consensus       229 ~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  308 (459)
                      +++++++++|+||||.+++   +++|.++|++||+++|+|++|......   .   .+..+    +.++++.|+||.+|+
T Consensus       169 ~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~---~---~~~~~----~~di~~~s~sK~~~~  235 (420)
T 1t3i_A          169 KTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHYP---L---DVQLI----DCDWLVASGHKMCAP  235 (420)
T ss_dssp             TEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC---C---CHHHH----TCSEEEEEGGGTTSC
T ss_pred             CceEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccCCcc---C---chhhc----CCCEEEEehhhhcCC
Confidence            7888899999999999977   788999999999999999998754321   1   12111    357889999999998


Q ss_pred             CCCCcceEEEEeCChhHHHHHHHHHHhhccc--------------------cccCCchHHHHHHHH-HhCChhhHHHHHH
Q 012647          309 YAERIGAMNVVCSSSDLAARVKSQLKRLARP--------------------MYSNPPVHGARIVAN-VVGNPALFDEWKA  367 (459)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~-~L~~~~~~~~~~~  367 (459)
                      +|  +||+++   +++..    +.+......                    ...+.+.+.+.++.. .++   +..  ..
T Consensus       236 ~g--~G~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~---~~~--~~  301 (420)
T 1t3i_A          236 TG--IGFLYG---KEEIL----EAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVD---YLT--DL  301 (420)
T ss_dssp             TT--CEEEEE---CHHHH----HHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHH---HHH--HH
T ss_pred             Cc--eEEEEE---chHHH----hhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHH---HHH--Hh
Confidence            88  899876   77743    333322111                    112344555554432 221   110  11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCC------cceeeec--CCCHHHHHHHHhcccEEEcCC--------
Q 012647          368 EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ------IGMFSFT--GLNKAQSDNMTNKWHVYMTKD--------  431 (459)
Q Consensus       368 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~------~g~f~~~--~l~~~~~~~ll~~~gI~v~~g--------  431 (459)
                      .+++++++++++++++.+.|+ +++   ++++..+.      ++++.|.  +.+.+.+.+.++++||.+.+|        
T Consensus       302 ~~~~~~~~~~~~~~~l~~~L~-~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~  377 (420)
T 1t3i_A          302 GMENIHNYEVELTHYLWQGLG-QIP---QLRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLH  377 (420)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHH-TCT---TEEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hCC---CeEEeCCCccccccCCEEEEEECCCCHHHHHHHHHHCCeEEeeccccchHHH
Confidence            357788899999999999999 762   15666553      6666553  234444445556679999887        


Q ss_pred             -----C---cEEEccC-ChhhHHHHHHHHHHHHhhc
Q 012647          432 -----G---RISLAGL-SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       432 -----g---Ris~~~~-~~e~i~~~~~~l~~~~~~~  458 (459)
                           .   ||+++.. +++++++++++|+++++++
T Consensus       378 ~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~  413 (420)
T 1t3i_A          378 RLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFF  413 (420)
T ss_dssp             HHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence                 2   9998863 8899999999999998765

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=100.00  E-value=3.3e-32  Score=269.06  Aligned_cols=320  Identities=13%  Similarity=0.093  Sum_probs=227.9

Q ss_pred             CCCCCCccCcHHHHHHHHHHhhcCCC-----C--CCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHH
Q 012647           94 RTEELQPYVLDVVKKAENLMLERGEN-----K--EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRL  166 (459)
Q Consensus        94 ~~~~~~~~~~~~v~~a~~~~~~~~~~-----~--~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l  166 (459)
                      +|.+..++.++.+.+++.+.+.....     +  .|.+..+.+++|+++++++..      ++++|++  |+||++++++
T Consensus         5 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~------~~~~v~~--~~g~t~a~~~   76 (384)
T 1eg5_A            5 FDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGV------SPSEIFF--TSCATESINW   76 (384)
T ss_dssp             CBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTS------CGGGEEE--ESCHHHHHHH
T ss_pred             EecCccCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCC------CCCeEEE--ECCHHHHHHH
Confidence            34434445589999999998864210     1  133456779999999999742      2678999  9999999999


Q ss_pred             HHHHHHH--hCCCCEEEEcCCCCcchHHHh---hhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          167 AAALIER--YFPGAKVLISSPTWGNHKNIF---NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       167 ~~~~~~~--~~~gd~Vlv~~p~y~~~~~~~---~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      +...+..  ..+||+|++++|+|..+...+   +..|++++.+|++  .++.+|++.+++++++   +++++++++|+||
T Consensus        77 ~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~---~~~~v~~~~~~np  151 (384)
T 1eg5_A           77 ILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVD--SRGVVKLEELEKLVDE---DTFLVSIMAANNE  151 (384)
T ss_dssp             HHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBC--TTSCBCHHHHHHHCCT---TEEEEEEESBCTT
T ss_pred             HHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccC--CCCccCHHHHHHHhCC---CCeEEEEECCCCC
Confidence            8554421  169999999999999886655   6789999999984  4577999999999875   6888888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcC--CeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEE
Q 012647          242 TGIDPTPEQWEKIADVIQEKN--HIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~--~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (459)
                      ||.+++   +++|.++|++||  +++|+||+|. ++....     .+    ...+.++++.|+||.+|++|  +||+++ 
T Consensus       152 tG~~~~---~~~i~~l~~~~~~~~~li~Dea~~-~~~~~~-----~~----~~~~~di~~~s~sK~~g~~G--~G~~~~-  215 (384)
T 1eg5_A          152 VGTIQP---VEDVTRIVKKKNKETLVHVDAVQT-IGKIPF-----SL----EKLEVDYASFSAHKFHGPKG--VGITYI-  215 (384)
T ss_dssp             TCBBCC---HHHHHHHHHHHCTTCEEEEECTTT-TTTSCC-----CC----TTTCCSEEEEEGGGGTSCTT--CEEEEE-
T ss_pred             cccccC---HHHHHHHHHhcCCceEEEEEhhhh-cCCccc-----Cc----hhcCCCEEEecHHHhcCCCc--eEEEEE-
Confidence            999987   578999999999  9999999976 332111     11    12246789999999999888  799966 


Q ss_pred             eCChhHHHHHHHHHHhh---ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 012647          320 CSSSDLAARVKSQLKRL---ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKD  396 (459)
Q Consensus       320 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~  396 (459)
                        +++.  .+...+...   ......+++..++.++...|+.      +.+++++.+++++++++++.+.|+ +.|    
T Consensus       216 --~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~------~~~~~~~~~~~~~~~~~~l~~~L~-~~g----  280 (384)
T 1eg5_A          216 --RKGV--PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEI------AVEELSEAAKHMEKLRSKLVSGLM-NLG----  280 (384)
T ss_dssp             --CTTS--CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHH------HHHTHHHHHHHHHHHHHHHHHHHH-TTT----
T ss_pred             --cCCC--ccccccccCcccccccCCCCChHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHhC-CCC----
Confidence              5552  011111110   0112335677777766655543      133467889999999999999999 755    


Q ss_pred             cccccCC-c---c--eeeecCCCHHH-HHHHHhcccEEEcCC-------------------------C--cEEEcc-CCh
Q 012647          397 WSFILRQ-I---G--MFSFTGLNKAQ-SDNMTNKWHVYMTKD-------------------------G--RISLAG-LSL  441 (459)
Q Consensus       397 ~~~~~~~-~---g--~f~~~~l~~~~-~~~ll~~~gI~v~~g-------------------------g--Ris~~~-~~~  441 (459)
                      +++..+. +   +  .|.+.+.+.+. .+.| .++||.+.+|                         +  ||+++. .++
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~  359 (384)
T 1eg5_A          281 AHIITPLEISLPNTLSVSFPNIRGSTLQNLL-SGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTE  359 (384)
T ss_dssp             CEECSCTTSBCTTEEEEECTTCCHHHHHHHH-HHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCH
T ss_pred             eEEeCCcccCCCCEEEEEeCCCCHHHHHHHH-hhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCH
Confidence            4554432 1   1  22333455544 4555 5579999873                         2  999884 389


Q ss_pred             hhHHHHHHHHHHHHhhc
Q 012647          442 AKCEYLADAIIDSYHNV  458 (459)
Q Consensus       442 e~i~~~~~~l~~~~~~~  458 (459)
                      +++++++++|+++++++
T Consensus       360 ~~i~~~~~~l~~~~~~~  376 (384)
T 1eg5_A          360 EEVDYFLKKIEEILSFL  376 (384)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998865

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=100.00  E-value=7.9e-32  Score=268.34  Aligned_cols=327  Identities=13%  Similarity=0.085  Sum_probs=235.8

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC--CC------CCCCCcccHHHHHHHHHHHhcCCCCccccCceEE
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NK------EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVAT  154 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~------~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (459)
                      ++++.|+.+.+    +  +.++.+.+++.+.+....  .+      .|.+..+..++|+++++++...     ++++|++
T Consensus        22 ~~~i~l~~~~~----~--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-----~~~~v~~   90 (406)
T 1kmj_A           22 LPLAYLDSAAS----A--QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINAR-----SAEELVF   90 (406)
T ss_dssp             EECEECCTTTC----C--CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCS-----CGGGEEE
T ss_pred             CceEEecCCcc----C--CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCC-----CCCeEEE
Confidence            35788988876    3  247889999988875421  11      1235678899999999997542     2688999


Q ss_pred             eecccchhHHHHHHHHHHH--hCCCCEEEEcCCCCcc----hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCC
Q 012647          155 VQGLSGTGSLRLAAALIER--YFPGAKVLISSPTWGN----HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG  228 (459)
Q Consensus       155 ~~t~ggt~a~~l~~~~~~~--~~~gd~Vlv~~p~y~~----~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~  228 (459)
                        |+|++++++++.+.+..  +.+||+|++++|+|..    |...++..|++++.+|++  +++.+|++.+++++++   
T Consensus        91 --~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~l~~---  163 (406)
T 1kmj_A           91 --VRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLN--PDGTLQLETLPTLFDE---  163 (406)
T ss_dssp             --ESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBC--TTSCBCGGGHHHHCCT---
T ss_pred             --eCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecC--CCCCcCHHHHHHHhcc---
Confidence              99999999998443311  5799999999999865    344567789999999984  4577999999999975   


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc
Q 012647          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (459)
Q Consensus       229 ~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  308 (459)
                      +++++++++|+||||.+++   +++|.++|++||+++|+||+|......   .   .+.    ..+.++++.|+||.+|+
T Consensus       164 ~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~~---~---~~~----~~~~d~~~~s~~K~~g~  230 (406)
T 1kmj_A          164 KTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHHP---V---DVQ----ALDCDFYVFSGHKLYGP  230 (406)
T ss_dssp             TEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC---C---CHH----HHTCSEEEEEGGGTTSC
T ss_pred             CCeEEEEeCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcCCCC---C---ccc----ccCCCEEEEEchhccCC
Confidence            7888899999999999987   788999999999999999998754321   1   111    12467889999999998


Q ss_pred             CCCCcceEEEEeCChhHHHHHHHHHHhhcc---------------------ccccCCchHHHHHHH-HHhCChhhHHHHH
Q 012647          309 YAERIGAMNVVCSSSDLAARVKSQLKRLAR---------------------PMYSNPPVHGARIVA-NVVGNPALFDEWK  366 (459)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~-~~L~~~~~~~~~~  366 (459)
                      +|  +||+++   +++.+    +.+.....                     ....+.+.+.+.++. ..++   +..  .
T Consensus       231 ~G--~G~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~---~~~--~  296 (406)
T 1kmj_A          231 TG--IGILYV---KEALL----QEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALE---YVS--A  296 (406)
T ss_dssp             TT--CEEEEE---CHHHH----HHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHH---HHH--H
T ss_pred             CC--cEEEEE---eHHHH----hhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHH---HHH--H
Confidence            88  899976   77743    33332211                     011233445555443 2222   110  1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC--Ccceeeec--CCCHHHHHHHHhcccEEEcCC-----------
Q 012647          367 AEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR--QIGMFSFT--GLNKAQSDNMTNKWHVYMTKD-----------  431 (459)
Q Consensus       367 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~--~~g~f~~~--~l~~~~~~~ll~~~gI~v~~g-----------  431 (459)
                      ..+++.+++++++++++.+.|+ +++   ++++..+  .++++.|.  +.+.+.+.+.+.++||.+.+|           
T Consensus       297 ~~~~~~~~~~~~~~~~l~~~L~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~  372 (406)
T 1kmj_A          297 LGLNNIAEYEQNLMHYALSQLE-SVP---DLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYY  372 (406)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHT-TST---TEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHHHHHHHh-cCC---CeEEecCCCcCCEEEEEECCCCHHHHHHHHhhCCcEEEeccccchHHHHhc
Confidence            2356788899999999999999 762   2666666  77777663  334444444555579998753           


Q ss_pred             ---C--cEEEccC-ChhhHHHHHHHHHHHHhhc
Q 012647          432 ---G--RISLAGL-SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       432 ---g--Ris~~~~-~~e~i~~~~~~l~~~~~~~  458 (459)
                         +  ||+++.. +++++++++++|+++++.+
T Consensus       373 g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l  405 (406)
T 1kmj_A          373 NVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL  405 (406)
T ss_dssp             TCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence               3  9999865 8899999999999998865

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=100.00  E-value=4e-31  Score=262.89  Aligned_cols=328  Identities=11%  Similarity=0.050  Sum_probs=229.9

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC------CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG------ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~------~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (459)
                      +.+.|||+.|.|+   +. ..++.+.+++.+.+...      ....|++..+..++|+.+++++..       ++.|++ 
T Consensus        42 g~~~id~~~~~~~---g~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~-------~~~i~~-  109 (399)
T 3tqx_A           42 EKEVLNFCANNYL---GL-ADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGT-------DDTILY-  109 (399)
T ss_dssp             TEEEEECSSCCTT---SC-TTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTC-------SEEEEE-
T ss_pred             CeeEEEeeccCcc---cc-cCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCC-------CcEEEE-
Confidence            4578999999662   22 23788888888777431      111233455679999999999743       345555 


Q ss_pred             ecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCC---CcEE
Q 012647          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG---GSFI  232 (459)
Q Consensus       156 ~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~---~~~~  232 (459)
                       + +|++++.++  +...+.+||+|+++.|+|..+...++..|++++.+|.       +|++.+++.+++...   ++++
T Consensus       110 -~-sGt~a~~~~--l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~  178 (399)
T 3tqx_A          110 -S-SCFDANGGL--FETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKN-------NAMGDLEAKLKEADEKGARFKL  178 (399)
T ss_dssp             -S-CHHHHHHTT--HHHHCCTTCEEEEETTCCHHHHHHHHSCCSEEEEECT-------TCTTHHHHHHHHHHTTTCSSEE
T ss_pred             -C-chHHHHHHH--HHHhcCCCCEEEECCcccHHHHHHHHHcCCceeEeCC-------CCHHHHHHHHHhhhccCCCceE
Confidence             4 558888887  3444679999999999999999999999999988876       367788888775322   6889


Q ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEEcCCcCcccCCC
Q 012647          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAE  311 (459)
Q Consensus       233 ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~  311 (459)
                      +++++|+||||.+++   +++|+++|++||+++|+||+|....++.   +..+.....+ ..+.+++++||||.++  |+
T Consensus       179 v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~---~~~~~~~~~~~~~~~di~~~s~sK~~~--g~  250 (399)
T 3tqx_A          179 IATDGVFSMDGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGE---NGRGTPEYCGVADRVDILTGTLGKALG--GA  250 (399)
T ss_dssp             EEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSST---TSCCHHHHHTCTTCCSEEEEESSSSSC--SS
T ss_pred             EEEeCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCC---CCCchHHhhCCCCCCcEEEecchHhcc--cC
Confidence            999999999999977   7899999999999999999985322221   1111212222 1245799999999998  34


Q ss_pred             CcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          312 RIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       312 RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                      +.||+++   +++.++.+........  ...+.+...+.++...++..      .+++++.+++++++++++.+.|+ ++
T Consensus       251 ~gG~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~  318 (399)
T 3tqx_A          251 SGGYTSG---HKEIIEWLRNRSRPYL--FSNTVAPVIVATSLKVLELL------KTEGPQLRKQLQENSRYFRAGME-KL  318 (399)
T ss_dssp             CCEEEEE---CHHHHHHHHHHCHHHH--SSCCCCHHHHHHHHHHHHHH------HHTHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred             ceEEEEc---CHHHHHHHHHhCccee--ccCCCcHHHHHHHHHHHHHH------hhccHHHHHHHHHHHHHHHHHHH-Hc
Confidence            4599876   8886655544322111  12234444444444443211      13467889999999999999999 88


Q ss_pred             CCCCCcccccCCcceeeecCC-----CHHHHHHHHhcccEEEcCC-------C----cEEEc-cCChhhHHHHHHHHHHH
Q 012647          392 KSGKDWSFILRQIGMFSFTGL-----NKAQSDNMTNKWHVYMTKD-------G----RISLA-GLSLAKCEYLADAIIDS  454 (459)
Q Consensus       392 g~~~~~~~~~~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~g-------g----Ris~~-~~~~e~i~~~~~~l~~~  454 (459)
                      |    +++..+.++ |+|+.+     ..++.++|++ +||.+.++       +    ||+++ ..+++++++++++|+++
T Consensus       319 g----~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  392 (399)
T 3tqx_A          319 G----FQLVPGNHP-IIPVMLGDAQLATNMADHLLQ-EGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQV  392 (399)
T ss_dssp             T----CCBCCCSSS-EEEEEEECHHHHHHHHHHHHH-TTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred             C----CCcCCCCCC-EEEEEeCCHHHHHHHHHHHHH-CCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHH
Confidence            7    566666655 455433     2345667776 59999843       2    99987 34899999999999999


Q ss_pred             Hhhc
Q 012647          455 YHNV  458 (459)
Q Consensus       455 ~~~~  458 (459)
                      ++++
T Consensus       393 ~~~~  396 (399)
T 3tqx_A          393 GKKL  396 (399)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            9875

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.98  E-value=2e-31  Score=263.79  Aligned_cols=318  Identities=13%  Similarity=0.063  Sum_probs=228.1

Q ss_pred             CCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCC
Q 012647           98 LQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG  177 (459)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~g  177 (459)
                      +..++++.+.+++.+.+.    ..|++.  ..++++++++++....|.+ +++++++  |+||++++.++..  ..+.+|
T Consensus        27 ~~~~~~~~v~~a~~~~~~----~~~~~~--~~~~~~~~~~~la~~~g~~-~~~~v~~--~~g~t~a~~~~~~--~l~~~g   95 (386)
T 2dr1_A           27 GPVACFPEVLEIMKVQMF----SHRSKE--YRKVHMDTVERLREFLEVE-KGEVLLV--PSSGTGIMEASIR--NGVSKG   95 (386)
T ss_dssp             SSCCCCHHHHHHTTSCCC----CTTSHH--HHHHHHHHHHHHHHHHTCS-SSEEEEE--SSCHHHHHHHHHH--HHSCTT
T ss_pred             CCcCCcHHHHHHHhcccc----cccCHH--HHHHHHHHHHHHHHHhCCC-CCcEEEE--eCChHHHHHHHHH--HhhcCC
Confidence            444557888888766542    345432  2456666666555444443 3567888  9999999999843  346799


Q ss_pred             CEEEEcCCCCcc--hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 012647          178 AKVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIA  255 (459)
Q Consensus       178 d~Vlv~~p~y~~--~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~  255 (459)
                      |+|++++|+|..  +...++..|++++.+|++  .++.+|++++++++++. ++++++++++|+||||.+.   ++++|.
T Consensus        96 d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~---~l~~i~  169 (386)
T 2dr1_A           96 GKVLVTIIGAFGKRYKEVVESNGRKAVVLEYE--PGKAVKPEDLDDALRKN-PDVEAVTITYNETSTGVLN---PLPELA  169 (386)
T ss_dssp             CEEEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHHC-TTCCEEEEESEETTTTEEC---CHHHHH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCceEEEecC--CCCCCCHHHHHHHHhcC-CCCcEEEEEeecCCcchhC---CHHHHH
Confidence            999999999988  888889999999999984  35779999999999642 2567788889999999995   478899


Q ss_pred             HHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHH----
Q 012647          256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKS----  331 (459)
Q Consensus       256 ~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~----  331 (459)
                      ++|++||+++|+||+|..+... .     .    ....+.++++.|+||.++.++ ++||+++   +++.++.+..    
T Consensus       170 ~l~~~~~~~li~D~a~~~~~~~-~-----~----~~~~~~di~~~s~sK~~~~~~-g~G~~~~---~~~~~~~~~~~~~~  235 (386)
T 2dr1_A          170 KVAKEHDKLVFVDAVSAMGGAD-I-----K----FDKWGLDVVFSSSQKAFGVPP-GLAIGAF---SERFLEIAEKMPER  235 (386)
T ss_dssp             HHHHHTTCEEEEECTTTBTTBC-C-----C----TTTTTCSEEEEETTSTTCCCS-SCEEEEE---CHHHHHHHTTCTTC
T ss_pred             HHHHHcCCeEEEEccccccCcc-c-----c----ccccCCcEEEEeccccccCCC-ceEEEEE---CHHHHHHHhcCCCC
Confidence            9999999999999998765432 1     1    122346899999999998652 3899976   7775554421    


Q ss_pred             --------HHHhh--ccccccCCchHHHHHHHHHhCChhhHHHHHH--HHHHHHHHHHHHHHHHHHHHhhccCCCCCccc
Q 012647          332 --------QLKRL--ARPMYSNPPVHGARIVANVVGNPALFDEWKA--EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF  399 (459)
Q Consensus       332 --------~~~~~--~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~  399 (459)
                              .+...  ......+++..++.++...|+.      +.+  .+++.+++++++++++.+.|+ ++|    +++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~------~~~~g~~~~~~~~~~~~~~~l~~~L~-~~g----~~~  304 (386)
T 2dr1_A          236 GWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRI------IEKMGGKEKWLEMYEKRAKMVREGVR-EIG----LDI  304 (386)
T ss_dssp             CSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHHHH-HTT----CCB
T ss_pred             ceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHH------HHHhcCHHHHHHHHHHHHHHHHHHHH-HcC----Cee
Confidence                    11111  1122335667777766555532      122  267888999999999999999 776    455


Q ss_pred             ccCC---cceeeecC----CCH-HHHHHHHhcccEEEcCC------C--cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          400 ILRQ---IGMFSFTG----LNK-AQSDNMTNKWHVYMTKD------G--RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       400 ~~~~---~g~f~~~~----l~~-~~~~~ll~~~gI~v~~g------g--Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                      ..++   .+.++|+.    .+. ++.++|.++ ||.+.+|      +  ||+++. .+++++++++++|+++++++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  379 (386)
T 2dr1_A          305 LAEPGHESPTITAVLTPPGIKGDEVYEAMRKR-GFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINEL  379 (386)
T ss_dssp             SSCTTCBCSSEEEEECCTTCCHHHHHHHHHHT-TEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CcCccccCCceEEEEcCCCCCHHHHHHHHHHC-CeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence            5554   24555543    344 456677775 9999885      2  999985 48999999999999998764

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.98  E-value=1.7e-30  Score=258.99  Aligned_cols=315  Identities=13%  Similarity=0.071  Sum_probs=220.5

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccH---HHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLA---AFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~---~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      +..++++|.| |....+++.+.+.+++..+......+.|++ .|.+   ++++++++++..        +++++  ++||
T Consensus        19 ~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~l~~~ia~~~g~--------~~~i~--~~~g   86 (404)
T 1e5e_A           19 KDQFGAAIPP-IYQTSTFVFDNCQQGGNRFAGQESGYIYTR-LGNPTVSNLEGKIAFLEKT--------EACVA--TSSG   86 (404)
T ss_dssp             CCTTCCSSCC-CCCCSBCCCSSHHHHHHHHTTSSCSCCBTT-TCCHHHHHHHHHHHHHHTC--------SEEEE--ESSH
T ss_pred             CCCCCCcCCC-CcCCCccccCCHHHHHHhhcCCcCCccccC-CcChHHHHHHHHHHHHhCC--------CcEEE--eCCh
Confidence            3457888888 555555555666555543222222367866 5666   899999999743        35666  7888


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeC
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG  236 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~  236 (459)
                      ++++.++  +...+.+||+|++++|+|..+..    .++..|++++.+|.+       |++++++++++   ++++++++
T Consensus        87 ~~ai~~~--~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~~---~t~~v~l~  154 (404)
T 1e5e_A           87 MGAIAAT--VLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-------IPGEVKKHMKP---NTKIVYFE  154 (404)
T ss_dssp             HHHHHHH--HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-------STTHHHHHCCT---TEEEEEEE
T ss_pred             HHHHHHH--HHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-------CHHHHHHhcCC---CCcEEEEE
Confidence            9999998  34447799999999999999888    678899999998872       78899998875   78899999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHh-cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc-c
Q 012647          237 CAHNPTGIDPTPEQWEKIADVIQE-KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-G  314 (459)
Q Consensus       237 ~p~NPTG~~~s~~~l~~i~~l~~~-~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G  314 (459)
                      +||||||.+++   +++|+++|++ +|+++|+||+|..+.+..      .+     ..+.++++.|+||.|+++|+|+ |
T Consensus       155 ~p~NptG~v~~---l~~i~~la~~~~~~~li~De~~~~~~~~~------~~-----~~~~di~~~S~sK~~~~~g~ri~G  220 (404)
T 1e5e_A          155 TPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMITN------PV-----DFGVDVVVHSATKYINGHTDVVAG  220 (404)
T ss_dssp             SSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTCC------GG-----GGTCSEEEEETTTTTTCSSCCCCE
T ss_pred             CCCCCCCcccC---HHHHHHHHHhhcCCEEEEECCCchhhhCC------cc-----ccCCEEEEEcCccccCCCCCCeEE
Confidence            99999999974   8899999999 999999999999887531      11     1257899999999999999998 9


Q ss_pred             eEEEEeCChhHHHHHHHHHHhhcccc-ccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-
Q 012647          315 AMNVVCSSSDLAARVKSQLKRLARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-  392 (459)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-  392 (459)
                      |+++   +++.++   +.+....... ..+.+.+.+.++...|++.          ....++..++.+.+.+.|+ +.+ 
T Consensus       221 ~~~~---~~~~~~---~~l~~~~~~~~g~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~l~~~l~-~~~~  283 (404)
T 1e5e_A          221 LICG---KADLLQ---QIRMVGIKDITGSVISPHDAWLITRGLSTL----------NIRMKAESENAMKVAEYLK-SHPA  283 (404)
T ss_dssp             EEEE---CHHHHH---HHHHTCCCCCCCCCCCHHHHHHHHHHHTTH----------HHHHHHHHHHHHHHHHHHH-TCTT
T ss_pred             EEEE---CHHHHH---HHHHHHHHhCCCCCCCHHHHHHHHHhHhHH----------HHHHHHHHHHHHHHHHHHH-hCCC
Confidence            9876   766332   1444444333 3356777777777777643          1222333344444444454 321 


Q ss_pred             -----CC-----CCcccccCC----cceeeecCCC--HHHHHHHHhcccEEEcC--------------------------
Q 012647          393 -----SG-----KDWSFILRQ----IGMFSFTGLN--KAQSDNMTNKWHVYMTK--------------------------  430 (459)
Q Consensus       393 -----~~-----~~~~~~~~~----~g~f~~~~l~--~~~~~~ll~~~gI~v~~--------------------------  430 (459)
                           .+     +++++..++    ++++.| .+.  .+.+.+++++.||.+..                          
T Consensus       284 v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~  362 (404)
T 1e5e_A          284 VEKVYYPGFEDHEGHDIAKKQMRMYGSMITF-ILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEER  362 (404)
T ss_dssp             EEEEECTTCSSSTTHHHHHHHCSSCCSEEEE-EETTHHHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHH
T ss_pred             eeEEECCCCCCCccHHHHHhhCCCCceEEEE-EeCCCHHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHH
Confidence                 00     013333343    788888 443  25577788878874322                          


Q ss_pred             ---C---C--cEEEccCChhhHHHHHHHHHHHHhh
Q 012647          431 ---D---G--RISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       431 ---g---g--Ris~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                         |   |  |||++.   |+++.++++|+++++.
T Consensus       363 ~~~g~~~~~iRis~g~---e~~~~li~~l~~al~~  394 (404)
T 1e5e_A          363 EAAGITDGMIRLSVGI---EDADELIADFKQGLDA  394 (404)
T ss_dssp             HHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred             HhcCCCCCeEEEEeCC---CCHHHHHHHHHHHHHH
Confidence               1   3  999975   8899999999988865

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.98  E-value=1.3e-31  Score=263.69  Aligned_cols=324  Identities=12%  Similarity=0.018  Sum_probs=225.1

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC--------CCCCCCCcccHHHHHH-HHHHHhcCCCCccccCce
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--------NKEYLPIEGLAAFNKV-TAELLFGADNSVLKEQRV  152 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--------~~~Y~~~~g~~~lr~a-ia~~l~~~~~~~~~~~~i  152 (459)
                      .++++.|..|.+    ..+ +++.+.+++.+.+....        ...|.+..+..++|++ +++++..       + +|
T Consensus         6 ~~~~i~ld~~~~----~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~-------~-~v   72 (371)
T 2e7j_A            6 TKDFINIDPLQT----GGK-LTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGC-------D-VA   72 (371)
T ss_dssp             --CCEECCHHHH----TCC-CCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTS-------S-EE
T ss_pred             CCCcEEeccccc----CCC-CCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCC-------C-EE
Confidence            457888888765    223 38899999998775421        1335577899999999 9999643       2 78


Q ss_pred             EEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeee--eecCCCCCCCHHHHHHHHHcCC--C
Q 012647          153 ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYR--YYDPKTVGLDFEGMIADIKAAP--G  228 (459)
Q Consensus       153 ~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~--~~~~~~~~~d~e~l~~~i~~~~--~  228 (459)
                      ++  |+|++++++++...  .+.+||+|++++|+|..+...++..|++++.+|  +  +.++.+|++++++++++..  +
T Consensus        73 ~~--~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~d~~~l~~~l~~~~~~~  146 (371)
T 2e7j_A           73 RV--TNGAREAKFAVMHS--LAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTD--YPDYAITPENFAQTIEETKKRG  146 (371)
T ss_dssp             EE--ESSHHHHHHHHHHH--HCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCC--TTTCCCCHHHHHHHHHHHTTTS
T ss_pred             EE--eCChHHHHHHHHHH--HhCCCCEEEEccCcchHHHHHHHHcCCeEEEeeccc--CCCCCcCHHHHHHHHHhhcccC
Confidence            88  99999999998443  367999999999999999999999999999999  6  3457899999999998311  2


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc
Q 012647          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (459)
Q Consensus       229 ~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  308 (459)
                      +++++++++||||||.+++   +++|.++|++||+++|+||+|..+...   .   .+..+    +.+++++|+||.++.
T Consensus       147 ~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~---~---~~~~~----~~di~~~s~sK~~~~  213 (371)
T 2e7j_A          147 EVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRMP---V---SLKEI----GADFIVGSGHKSMAA  213 (371)
T ss_dssp             CEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTBC---C---CHHHH----TCSEEEEEHHHHSSC
T ss_pred             CeEEEEEECCCCCCcccCC---HHHHHHHHHHcCCeEEEECccccCCCC---C---Chhhc----CCCEEEecCCcCCCC
Confidence            6788999999999999976   478999999999999999998876532   1   12111    245899999999884


Q ss_pred             CCCCcceEEEEeCChhHHHHHHHHHHhhccc-c------ccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH--HHH
Q 012647          309 YAERIGAMNVVCSSSDLAARVKSQLKRLARP-M------YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI--KNV  379 (459)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~--~~~  379 (459)
                       |.|+||+++   +++.++.   .+...... .      ...++...+.++...++   +.   .+   +..+++  +++
T Consensus       214 -~~~~G~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~---~~---~~~~~~~~~~~  277 (371)
T 2e7j_A          214 -SGPIGVMGM---KEEWAEI---VLRRSEKYKNKEVELLGCTARGATIITLMASFP---HV---RE---RIKRWDEEVEK  277 (371)
T ss_dssp             -CSSCEEEEE---CTTTTTT---TTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHH---HH---HH---HGGGHHHHHHH
T ss_pred             -CCCcEEEEE---echhhhh---hccccccCcccccccccCCcCHHHHHHHHHHHH---HH---HH---HHHHHHHHHHH
Confidence             459999976   6663322   02222210 1      11223333333322221   10   11   556677  888


Q ss_pred             HHHHHHHHhhccCCCCCcccccCC--cceeeecCC-CH-HHHHHHHhcccEEEcC--------C---C--c-EEEcc--C
Q 012647          380 RQKLFDSLSAKDKSGKDWSFILRQ--IGMFSFTGL-NK-AQSDNMTNKWHVYMTK--------D---G--R-ISLAG--L  439 (459)
Q Consensus       380 ~~~l~~~L~~~~g~~~~~~~~~~~--~g~f~~~~l-~~-~~~~~ll~~~gI~v~~--------g---g--R-is~~~--~  439 (459)
                      ++++.+.|+ ++|    +++..+.  .+.++|+.+ +. ++.+.|. ++||.+.|        |   +  | |+++.  .
T Consensus       278 ~~~l~~~L~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~  351 (371)
T 2e7j_A          278 ARRFAAEME-KLG----IKQLGDNPHNHDLMFFHAEVLYEISKKAK-GGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGL  351 (371)
T ss_dssp             HHHHHHHHH-HTT----CEEESSSSCCSSEEEEECHHHHHHHHHSS-SGGGHHHHHHHHTTEECSCTTCCSEEEEECTTC
T ss_pred             HHHHHHHHH-HcC----cEEecCCCccCceEEEECCCHHHHHHHHH-HCCEEEEeccccccccCCCCCceEEEEeeccCC
Confidence            999999998 775    5665553  244677665 33 3445555 57998865        2   2  9 99985  4


Q ss_pred             ChhhHHHHHHHHHHHHhhcC
Q 012647          440 SLAKCEYLADAIIDSYHNVS  459 (459)
Q Consensus       440 ~~e~i~~~~~~l~~~~~~~~  459 (459)
                      +++++++++++|++++++++
T Consensus       352 ~~~~i~~~~~~l~~~~~~~~  371 (371)
T 2e7j_A          352 SDEEVDYVLNAFKEIIEKYS  371 (371)
T ss_dssp             CHHHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHHHHhcC
Confidence            89999999999999998764

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.98  E-value=1e-30  Score=258.89  Aligned_cols=322  Identities=12%  Similarity=0.073  Sum_probs=227.8

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhc-CC---CCCC--CCCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GE---NKEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~---~~~Y--~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (459)
                      +...+||+.|.+.   +.+ .++.+.+++.+.+.. +.   ...|  ....+..++|+++++++..       ++.+++ 
T Consensus        38 g~~~id~~~~~~~---~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~-------~~~i~~-  105 (384)
T 1bs0_A           38 DRQYLNFSSNDYL---GLS-HHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGY-------SRALLF-  105 (384)
T ss_dssp             TEEEEECSCCCTT---SGG-GCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTC-------SEEEEE-
T ss_pred             CceEEEeeccCcc---CCC-CCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCC-------CcEEEe-
Confidence            3468999998641   322 378899999888754 21   1223  4557889999999999732       344544 


Q ss_pred             ecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEe
Q 012647          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (459)
Q Consensus       156 ~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~  235 (459)
                        .+|++++.++.  ...+.+||.|+++.|+|..+...++..|++++.+|.       .|++.+++.+++..++++++++
T Consensus       106 --~sGt~a~~~~~--~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~v~~  174 (384)
T 1bs0_A          106 --ISGFAANQAVI--AAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVVT  174 (384)
T ss_dssp             --SCHHHHHHHHH--HHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEEE
T ss_pred             --CCcHHHHHHHH--HHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCC-------CCHHHHHHHHHhcCCCCeEEEE
Confidence              55589999874  334679999999999999999999999999988874       4789999999874334788889


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcce
Q 012647          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA  315 (459)
Q Consensus       236 ~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~  315 (459)
                      ++||||||.+++   +++|.++|++||+++|+||+|..+.++.   +...+....+. ..+++++||||.++++|   ||
T Consensus       175 ~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~---~~~~~~~~~~~-~~di~~~s~sK~~~~~G---G~  244 (384)
T 1bs0_A          175 EGVFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGE---QGRGSCWLQKV-KPELLVVTFGKGFGVSG---AA  244 (384)
T ss_dssp             ESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSG---GGCCHHHHTTC-CCSEEEEESSSTTSSCC---EE
T ss_pred             eCCCCCCCCccC---HHHHHHHHHHcCcEEEEECCcccceecC---CCCchHHhcCC-CCcEEEeeccchhhccC---cE
Confidence            999999999987   6789999999999999999987665321   01111122222 23489999999999877   99


Q ss_pred             EEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccCCC
Q 012647          316 MNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA-EMEMMAGRIKNVRQKLFDSLSAKDKSG  394 (459)
Q Consensus       316 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~  394 (459)
                      +++   +++.++.+........ . ..+++.+++.++...|+..      .+ .+++.+++++++++++.+.|+ ++|  
T Consensus       245 ~~~---~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~~~~al~~~------~~~~~~~~~~~~~~~~~~l~~~L~-~~g--  310 (384)
T 1bs0_A          245 VLC---SSTVADYLLQFARHLI-Y-STSMPPAQAQALRASLAVI------RSDEGDARREKLAALITRFRAGVQ-DLP--  310 (384)
T ss_dssp             EEE---CHHHHHHHHHHCHHHH-S-SBCCCHHHHHHHHHHHHHH------HSHHHHHHHHHHHHHHHHHHHHHT-TSS--
T ss_pred             EEe---CHHHHHHHHHhchhhh-c-CCCCCHHHHHHHHHHHHHH------hccccHHHHHHHHHHHHHHHHHHH-hcC--
Confidence            866   7886655544211111 1 1245666666655444321      11 346788899999999999999 876  


Q ss_pred             CCcccccCCcceeeecCCC-----HHHHHHHHhcccEEEcCC---------C--cEEEccC-ChhhHHHHHHHHHHH
Q 012647          395 KDWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD---------G--RISLAGL-SLAKCEYLADAIIDS  454 (459)
Q Consensus       395 ~~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g---------g--Ris~~~~-~~e~i~~~~~~l~~~  454 (459)
                        +++.+ .++.|+|+.+.     .++.+.|.+ +||.+.++         +  ||+++.. +++++++++++|+++
T Consensus       311 --~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~  383 (384)
T 1bs0_A          311 --FTLAD-SCSAIQPLIVGDNSRALQLAEKLRQ-QGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN  383 (384)
T ss_dssp             --CEECS-CCSSBCCEEEESHHHHHHHHHHHHH-TTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             --CcccC-CCCCEEEEEeCCHHHHHHHHHHHHH-CCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence              45554 44555565442     244566666 49999864         2  9998754 789999999999864

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.98  E-value=8e-31  Score=256.69  Aligned_cols=330  Identities=11%  Similarity=0.028  Sum_probs=230.6

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      .+.+|+|+.+.+    +  +.++.+.+++.+.+.     .|.+..|..++++++++++....|  .++++|++  |+||+
T Consensus        12 ~p~~i~l~~~~~----~--~~~~~v~~a~~~~~~-----~~~~~~g~~~~~~~~~~~l~~~~g--~~~~~v~~--~~g~t   76 (359)
T 1svv_A           12 KPKPYSFVNDYS----V--GMHPKILDLMARDNM-----TQHAGYGQDSHCAKAARLIGELLE--RPDADVHF--ISGGT   76 (359)
T ss_dssp             ---CEECSCSCS----S--CCCHHHHHHHHHHTT-----CCCCSTTCSHHHHHHHHHHHHHHT--CTTSEEEE--ESCHH
T ss_pred             CCeeEEecCCCc----C--CCCHHHHHHHHHHHh-----hccccccccHHHHHHHHHHHHHhC--CCCccEEE--eCCch
Confidence            356889987554    3  348999999998774     255555666777777776655444  33678999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHH--HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC----CCCcEEEEe
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKN--IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA----PGGSFILLH  235 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~--~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~----~~~~~~ii~  235 (459)
                      ++++++.+.  .+.+||+|++++|+|..+..  .++..|++++.+|.+   ++.+|++.+++.+++.    ..+++++++
T Consensus        77 ~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~~v~~  151 (359)
T 1svv_A           77 QTNLIACSL--ALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLVYI  151 (359)
T ss_dssp             HHHHHHHHH--HCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEEEE
T ss_pred             HHHHHHHHH--HhCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC---CCeecHHHHHHHHHHHHhccCCCceEEEE
Confidence            999998433  36799999999999998877  478899999999973   5789999999999862    112778888


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCC--CCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc
Q 012647          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASG--SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI  313 (459)
Q Consensus       236 ~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri  313 (459)
                      ++| ||||.+++.+++++|+++|++||+++|+||+|.++..+  +.......+..     ...+++.|++|..++  .++
T Consensus       152 ~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-----~~d~~~~s~~K~g~~--~~~  223 (359)
T 1svv_A          152 SNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIAR-----LTDMFYIGATKAGGM--FGE  223 (359)
T ss_dssp             ESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHH-----HCSEEEEECTTTTCS--SCE
T ss_pred             EcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhh-----cCCEEEEecccCCCC--Cce
Confidence            888 79999999999999999999999999999998544211  11111111111     124677899997553  447


Q ss_pred             ceEEEEeCChhHHHHHHHHHHhhcccccc-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          314 GAMNVVCSSSDLAARVKSQLKRLARPMYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       314 G~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                      |++++   +++.++.+...... ....+. +.+...+  +..+|.+..        +++.+++++++++++.+.|+ ..|
T Consensus       224 g~l~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~l~~~~--------~~~~~~~~~~~~~~l~~~L~-~~~  288 (359)
T 1svv_A          224 ALIIL---NDALKPNARHLIKQ-RGALMAKGWLLGIQ--FEVLMKDNL--------FFELGAHSNKMAAILKAGLE-ACG  288 (359)
T ss_dssp             EEEEC---SGGGCTTHHHHHHH-TTCCCTTTHHHHHH--HHHHTSTTH--------HHHHHHHHHHHHHHHHHHHH-HTT
T ss_pred             EEEEE---cccHHHHHHHHHhc-CCcccccchhhHHH--HHHHHhhhh--------HHHHHHHHHHHHHHHHHHhc-cCC
Confidence            88755   67755544432211 111111 2222222  233455432        35678888999999999996 655


Q ss_pred             CCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcC---CC----cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          393 SGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTK---DG----RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       393 ~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~---gg----Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                          +++..+.+++|+|+.+..++.++|++++||.+.+   .+    ||+++. .+++++++++++|+++++++
T Consensus       289 ----~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  358 (359)
T 1svv_A          289 ----IRLAWPSASNQLFPILENTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST  358 (359)
T ss_dssp             ----CCBSSCCSSSEECBEEEHHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred             ----eEEccCCccceEEEEcCHHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence                5677678889999888777888888866998743   22    998754 38999999999999988765

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.97  E-value=5.6e-31  Score=261.46  Aligned_cols=313  Identities=14%  Similarity=0.098  Sum_probs=221.1

Q ss_pred             cCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccC-ceEEeecccchhHHHHHHHHHHHhCCCCE
Q 012647          101 YVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGTGSLRLAAALIERYFPGAK  179 (459)
Q Consensus       101 ~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt~a~~l~~~~~~~~~~gd~  179 (459)
                      ++++.+.+++.+.+.    ..|++.  ..++++++++++....|.  +++ +|++  |+||+++++++..  ..+.+||+
T Consensus        44 ~~~~~v~~a~~~~~~----~~~~~~--~~~~~~~~~~~la~~~g~--~~~~~v~~--t~g~t~al~~~~~--~~~~~gd~  111 (393)
T 1vjo_A           44 NAHPSVLQAMNVSPV----GHLDPA--FLALMDEIQSLLRYVWQT--ENPLTIAV--SGTGTAAMEATIA--NAVEPGDV  111 (393)
T ss_dssp             CCCHHHHHHHSSCCC----CTTSHH--HHHHHHHHHHHHHHHHTC--CCSCEEEE--SSCHHHHHHHHHH--HHCCTTCE
T ss_pred             CCCHHHHHHHhcccc----cccCHH--HHHHHHHHHHHHHHHhCC--CCCcEEEE--eCchHHHHHHHHH--hccCCCCE
Confidence            347889888877553    245432  345555555555444343  356 8999  9999999999843  34679999


Q ss_pred             EEEcCCCCcc--hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 012647          180 VLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV  257 (459)
Q Consensus       180 Vlv~~p~y~~--~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l  257 (459)
                      |++++|+|..  +...++..|++++.+|++  .++.+|++.+++++++.  +++++++++|+||||.+++   +++|.++
T Consensus       112 Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~---l~~i~~l  184 (393)
T 1vjo_A          112 VLIGVAGYFGNRLVDMAGRYGADVRTISKP--WGEVFSLEELRTALETH--RPAILALVHAETSTGARQP---LEGVGEL  184 (393)
T ss_dssp             EEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC---CTTHHHH
T ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEecC--CCCCCCHHHHHHHHhhC--CceEEEEeccCCCcceecc---HHHHHHH
Confidence            9999999998  888999999999999984  35679999999999752  4557788999999999965   7789999


Q ss_pred             HHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHH---HH
Q 012647          258 IQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQ---LK  334 (459)
Q Consensus       258 ~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~---~~  334 (459)
                      |+++|+++|+||+|. ++...  .   .    +...+.++++.|+||.++.+| |+||+++   +++.++.+...   ..
T Consensus       185 ~~~~~~~li~Dea~~-~g~~~--~---~----~~~~~~di~~~s~sK~l~~~~-~~G~l~~---~~~~~~~~~~~~~~~~  250 (393)
T 1vjo_A          185 CREFGTLLLVDTVTS-LGGVP--I---F----LDAWGVDLAYSCSQKGLGCSP-GASPFTM---SSRAIEKLQRRRTKVA  250 (393)
T ss_dssp             HHHHTCEEEEECTTT-TTTSC--C---C----TTTTTCSEEECCSSSTTCSCS-SCEEEEE---CHHHHHHHHTCSSCCS
T ss_pred             HHHcCCEEEEECCcc-ccCcC--C---c----ccccCccEEEEcCcccccCCC-ceEEEEE---CHHHHHHHhccCCCCC
Confidence            999999999999987 43211  1   1    122346788999999998777 9999977   77744443211   00


Q ss_pred             hh------------c-cccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012647          335 RL------------A-RPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  401 (459)
Q Consensus       335 ~~------------~-~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  401 (459)
                      ..            . ...+.+++..++.++...|+..  .   .+.+++.+++++++++++.+.|+ ++|    +++..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~--~---~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~  320 (393)
T 1vjo_A          251 NWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLI--A---QEGLANCWQRHQKNVEYLWERLE-DIG----LSLHV  320 (393)
T ss_dssp             CSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHH--H---HHCHHHHHHHHHHHHHHHHHHHH-HTT----CCBSS
T ss_pred             ceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHH--H---HccHHHHHHHHHHHHHHHHHHHH-HcC----CcccC
Confidence            00            0 1111256667777766555421  1   22367889999999999999999 776    56666


Q ss_pred             CCc---ceeeec----CCCH-HHHHHHHhcccEEEcCCC--------cEEE-c-cCChhhHHHHHHHHHHHHh
Q 012647          402 RQI---GMFSFT----GLNK-AQSDNMTNKWHVYMTKDG--------RISL-A-GLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       402 ~~~---g~f~~~----~l~~-~~~~~ll~~~gI~v~~gg--------Ris~-~-~~~~e~i~~~~~~l~~~~~  456 (459)
                      +++   +.++++    +.+. ++.+.|++++||.+.+|.        ||++ + ..+++++++++++|+++++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l~  393 (393)
T 1vjo_A          321 EKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR  393 (393)
T ss_dssp             CGGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred             CccccCCcEEEEEcCCCCCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHhC
Confidence            554   223333    3344 456677665699998762        9994 3 2256679999999998763

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.97  E-value=1.5e-31  Score=268.60  Aligned_cols=338  Identities=10%  Similarity=0.018  Sum_probs=226.0

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC--CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      ...+||+.|.+..+.++  .+|.+.+++.+.++...  ...|.+..+..++|+++++++.+    . .+++|++  |+||
T Consensus        41 ~~~id~~~~~~~~~lg~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~----~-~~~~v~~--~~g~  111 (426)
T 1sff_A           41 REYLDFAGGIAVLNTGH--LHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPG----D-FAKKTLL--VTTG  111 (426)
T ss_dssp             CEEEESSHHHHTCTTCB--TCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSC----S-SCEEEEE--ESSH
T ss_pred             CEEEEcccChhhcccCC--CCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCc----c-cccEEEE--eCch
Confidence            46789988874222244  27889999998885421  12467788999999999999732    1 2578999  9999


Q ss_pred             hhHHHHHHHHHHH-hCCCCEEEEcCCCCcchH-HHhhhCCCC-------------eeeeeeec---CCCCCCCHHHHHHH
Q 012647          161 TGSLRLAAALIER-YFPGAKVLISSPTWGNHK-NIFNDARVP-------------WSEYRYYD---PKTVGLDFEGMIAD  222 (459)
Q Consensus       161 t~a~~l~~~~~~~-~~~gd~Vlv~~p~y~~~~-~~~~~~G~~-------------v~~v~~~~---~~~~~~d~e~l~~~  222 (459)
                      +++++++.++... ..+| +|++++|+|..+. ..+...|.+             ++.+|+..   ..++.+|++.++++
T Consensus       112 ~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~  190 (426)
T 1sff_A          112 SEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRI  190 (426)
T ss_dssp             HHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHH
Confidence            9999998653323 3465 8999999997654 455555543             66677632   11234789999999


Q ss_pred             HHcC--CCCcEEEEe-CCCCCCCC-CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012647          223 IKAA--PGGSFILLH-GCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (459)
Q Consensus       223 i~~~--~~~~~~ii~-~~p~NPTG-~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (459)
                      +++.  +++++++++ ++++| || .+++++++++|.++|++||+++|+||+|.++++.+.   ...+    +..+....
T Consensus       191 l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~----~~~~~~~d  262 (426)
T 1sff_A          191 FKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT---LFAM----EQMGVAPD  262 (426)
T ss_dssp             HHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGG----GGTTSCCS
T ss_pred             HHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccc---hhhh----hhcCCCCC
Confidence            8731  124555554 56788 99 889999999999999999999999999998875431   1111    11111122


Q ss_pred             EEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012647          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  378 (459)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  378 (459)
                      +.||||.+++ |+|+||+++   +++    +.+.+.......+.+.+.++|.++...|+..      .+  +...+++++
T Consensus       263 i~s~sK~~~~-GlriG~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~------~~--~~~~~~~~~  326 (426)
T 1sff_A          263 LTTFAKSIAG-GFPLAGVTG---RAE----VMDAVAPGGLGGTYAGNPIACVAALEVLKVF------EQ--ENLLQKAND  326 (426)
T ss_dssp             EEEECGGGGT-SSCCEEEEE---EHH----HHTTSCTTSBCCSSSSCHHHHHHHHHHHHHH------HH--TTHHHHHHH
T ss_pred             EEEEcccccC-CCceEEEEE---cHH----HHhhhccCCcCcCCCCCHHHHHHHHHHHHHH------Hh--cCHHHHHHH
Confidence            3499999996 999999976   666    3333332222233356777777776554311      00  134456666


Q ss_pred             HHHHHHHHHhhccC--CCCCcccccCCcceeeecCCC-------------HHHHHHHHhcccEEEcCCC------cEEEc
Q 012647          379 VRQKLFDSLSAKDK--SGKDWSFILRQIGMFSFTGLN-------------KAQSDNMTNKWHVYMTKDG------RISLA  437 (459)
Q Consensus       379 ~~~~l~~~L~~~~g--~~~~~~~~~~~~g~f~~~~l~-------------~~~~~~ll~~~gI~v~~gg------Ris~~  437 (459)
                      +++++.+.|+ +++  ++. +....+. |+|+|+.+.             .++.+.|++ +||.+.||+      ||+++
T Consensus       327 ~~~~l~~~l~-~~~~~~~~-~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~~~~iRi~~~  402 (426)
T 1sff_A          327 LGQKLKDGLL-AIAEKHPE-IGDVRGL-GAMIAIELFEDGDHNKPDAKLTAEIVARARD-KGLILLSCGPYYNVLRILVP  402 (426)
T ss_dssp             HHHHHHHHHH-HHHHTCTT-EEEEEEE-TTEEEEEEBGGGCTTSBCHHHHHHHHHHHHH-TTEECEEESTTSCEEEECCC
T ss_pred             HHHHHHHHHH-HHHHhCCC-eEEEEEE-EEEEEEEEecCccccCCChHHHHHHHHHHHH-CCcEEecCCCCCCEEEEECC
Confidence            6777777766 542  211 2233445 567776551             234556665 599999874      99876


Q ss_pred             -cCChhhHHHHHHHHHHHHhhc
Q 012647          438 -GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       438 -~~~~e~i~~~~~~l~~~~~~~  458 (459)
                       ..+++++++++++|+++++++
T Consensus       403 ~~~~~~~i~~~~~~l~~~l~~~  424 (426)
T 1sff_A          403 LTIEDAQIRQGLEIISQCFDEA  424 (426)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHH
Confidence             448999999999999998765

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.97  E-value=1.9e-30  Score=257.39  Aligned_cols=317  Identities=11%  Similarity=-0.020  Sum_probs=218.8

Q ss_pred             CCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCC
Q 012647           98 LQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG  177 (459)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~g  177 (459)
                      +..+.++.+.+++.+.+.. . ..|....+..++|+++++++..      ++++|++  |+||++++.++.+.  .+.+|
T Consensus        16 ~~~~~~~~v~~a~~~~~~~-~-~~~~~~~~~~~l~~~la~~~g~------~~~~v~~--t~g~t~a~~~~~~~--~~~~g   83 (392)
T 2z9v_A           16 GPVNAYPEVLRGLGRTVLY-D-YDPAFQLLYEKVVDKAQKAMRL------SNKPVIL--HGEPVLGLEAAAAS--LISPD   83 (392)
T ss_dssp             SCCCCCHHHHHHTTSCCCC-T-TSHHHHHHHHHHHHHHHHHTTC------SSCCEEE--SSCTHHHHHHHHHH--HCCTT
T ss_pred             CCcCCCHHHHHHHhccccc-c-ccHHHHHHHHHHHHHHHHHhCC------CCCEEEE--eCCchHHHHHHHHH--hcCCC
Confidence            3344588999988776643 1 2222345678999999999743      2688999  99999999998443  37799


Q ss_pred             CEEEEcCCCCcch--HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 012647          178 AKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIA  255 (459)
Q Consensus       178 d~Vlv~~p~y~~~--~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~  255 (459)
                      |+|++++|+|+.+  ...++..|++++.+|++  .++.+|++.+++++++. ++++++++++|+||||.+++   +++|.
T Consensus        84 d~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~---l~~i~  157 (392)
T 2z9v_A           84 DVVLNLASGVYGKGFGYWAKRYSPHLLEIEVP--YNEAIDPQAVADMLKAH-PEITVVSVCHHDTPSGTINP---IDAIG  157 (392)
T ss_dssp             CCEEEEESSHHHHHHHHHHHHHCSCEEEEECC--TTSCCCHHHHHHHHHHC-TTCCEEEEESEEGGGTEECC---HHHHH
T ss_pred             CEEEEecCCcccHHHHHHHHHcCCceEEeeCC--CCCCCCHHHHHHHHhcC-CCCcEEEEeccCCCCceecc---HHHHH
Confidence            9999999999765  34456679999999984  34579999999999642 25678888999999999976   67899


Q ss_pred             HHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC-cccCCCCcceEEEEeCChhHHHHHHHHH-
Q 012647          256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN-LGLYAERIGAMNVVCSSSDLAARVKSQL-  333 (459)
Q Consensus       256 ~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~~G~RiG~~~~v~~~~~~~~~~~~~~-  333 (459)
                      ++|++||+++|+|++|.. +....  +   +    ...+.++++.|+||. ++++|  +||+++   +++.++.+.... 
T Consensus       158 ~l~~~~~~~li~D~a~~~-g~~~~--~---~----~~~~~d~~~~s~sK~~~~~~g--~G~l~~---~~~~~~~l~~~~~  222 (392)
T 2z9v_A          158 ALVSAHGAYLIVDAVSSF-GGMKT--H---P----EDCKADIYVTGPNKCLGAPPG--LTMMGV---SERAWAKMKANPL  222 (392)
T ss_dssp             HHHHHTTCEEEEECTTTB-TTBSC--C---G----GGGTCSEEEECSSSTTCCCSC--CEEEEE---CHHHHHHHHTCTT
T ss_pred             HHHHHcCCeEEEEccccc-CCccc--c---c----ccccceEEEecCcccccCCCc--eeEEEE---CHHHHHHhhhccC
Confidence            999999999999999763 21111  1   1    122356889999995 55566  599976   777444442100 


Q ss_pred             -------------Hh--hccccccCCchHHHHHHHHHhCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccCCCCCc
Q 012647          334 -------------KR--LARPMYSNPPVHGARIVANVVGNPALFDEWKAE-MEMMAGRIKNVRQKLFDSLSAKDKSGKDW  397 (459)
Q Consensus       334 -------------~~--~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~g~~~~~  397 (459)
                                   ..  .......+++..++.++...++      .+.+. +++++++++++++++.+.|+ ++|    +
T Consensus       223 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~------~~~~~g~~~~~~~~~~~~~~l~~~L~-~~g----~  291 (392)
T 2z9v_A          223 APRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALD------LYLNEGPEAVWARHALTAKAMRAGVT-AMG----L  291 (392)
T ss_dssp             SCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHH------HHHHHCHHHHHHHHHHHHHHHHHHHH-HTT----C
T ss_pred             CCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHH------HHHhccHHHHHHHHHHHHHHHHHHHH-HcC----C
Confidence                         00  0011122344444333333332      11233 67888999999999999999 775    4


Q ss_pred             cccc-CC---cceeeec----CCCH-HHHHHHHhcccEEEcCCC--------cEEE-c-cCChhhHHHHHHHHHHHHhhc
Q 012647          398 SFIL-RQ---IGMFSFT----GLNK-AQSDNMTNKWHVYMTKDG--------RISL-A-GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       398 ~~~~-~~---~g~f~~~----~l~~-~~~~~ll~~~gI~v~~gg--------Ris~-~-~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      ++.. +.   .+.++|+    +.+. ++.++|.+++||.+.+|.        ||++ + ..+++++++++++|+++++++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~  371 (392)
T 2z9v_A          292 SVWAASDSIASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAA  371 (392)
T ss_dssp             CBSSSSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred             eeccCCccccCCceEEEECCCCCCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHc
Confidence            5554 31   3444443    2344 456667665699998762        9994 5 458999999999999998764

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.97  E-value=8e-31  Score=259.78  Aligned_cols=326  Identities=13%  Similarity=0.040  Sum_probs=225.2

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC---CC---CCCC-CcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE---NK---EYLP-IEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~---~~---~Y~~-~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (459)
                      +++++|..+.+    +  +.++.+.+++.+.+....   ..   .|.. ..+..++|+++++++..      ++++|++ 
T Consensus        15 ~~~i~l~~~~~----~--~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~------~~~~v~~-   81 (390)
T 1elu_A           15 ANKTYFNFGGQ----G--ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNV------DPNTITI-   81 (390)
T ss_dssp             TTSEECCTTTC----C--CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTS------CGGGEEE-
T ss_pred             CCeEEecCCcc----C--CCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCC------CHHHEEE-
Confidence            35788887754    3  237889999888775311   01   3533 36889999999999742      2678999 


Q ss_pred             ecccchhHHHHHHHHHHH-hCCCCEEEEcCCCCcchHHH----hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCc
Q 012647          156 QGLSGTGSLRLAAALIER-YFPGAKVLISSPTWGNHKNI----FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGS  230 (459)
Q Consensus       156 ~t~ggt~a~~l~~~~~~~-~~~gd~Vlv~~p~y~~~~~~----~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~  230 (459)
                       |+||+++++++  +... +.+||+|++++|+|..+...    ++..|++++.+|++.++++.+|++.+++++++   ++
T Consensus        82 -~~g~t~a~~~~--~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~---~~  155 (390)
T 1elu_A           82 -TDNVTTGCDIV--LWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGP---KT  155 (390)
T ss_dssp             -ESSHHHHHHHH--HHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCT---TE
T ss_pred             -eCChHHHHHHH--HhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCC---Cc
Confidence             99999999998  3333 56999999999999987654    46679999999985335688999999998875   78


Q ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHH----hcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc
Q 012647          231 FILLHGCAHNPTGIDPTPEQWEKIADVIQ----EKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (459)
Q Consensus       231 ~~ii~~~p~NPTG~~~s~~~l~~i~~l~~----~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  306 (459)
                      +++++++|+||||.+++   +++|.++|+    +||+++|+||+|.... ...     .    ......++++.|+||.+
T Consensus       156 ~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~Dea~~~g~-~~~-----~----~~~~~~d~~~~s~~K~~  222 (390)
T 1elu_A          156 RLVILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAGS-LPL-----D----FSRLEVDYYAFTGHKWF  222 (390)
T ss_dssp             EEEEEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBTT-BCC-----C----TTTSCCSEEEEESSSTT
T ss_pred             eEEEEeccccCCceecC---HHHHHHHHhhhhhhcCcEEEEEcccccCC-cCC-----C----hhhcCCCEEEccccccc
Confidence            88999999999999987   778999999    9999999999986322 111     1    12234578899999933


Q ss_pred             ccCCCCcceEEEEeCChhHHHHHHHHHHh------------------hccccccCCchHHHHHHHHHhCChhhHHHHHHH
Q 012647          307 GLYAERIGAMNVVCSSSDLAARVKSQLKR------------------LARPMYSNPPVHGARIVANVVGNPALFDEWKAE  368 (459)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~  368 (459)
                      . .|.|+||+++   +++..+.+......                  ..+....+++..++.++...+..   ... ..+
T Consensus       223 ~-~~~g~G~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---l~~-~~~  294 (390)
T 1elu_A          223 A-GPAGVGGLYI---HGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQL---HQR-QGT  294 (390)
T ss_dssp             C-CCTTCEEEEE---CTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHH---HHH-HCC
T ss_pred             c-CCCceEEEEE---CHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHH---HHH-cCC
Confidence            2 4567999976   66633322210000                  00111224454554444333321   000 012


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcc-CCCCCccccc---CCcceeeec---CCCH-HHHHHHHhcccEEEcCCC-----cEE
Q 012647          369 MEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFIL---RQIGMFSFT---GLNK-AQSDNMTNKWHVYMTKDG-----RIS  435 (459)
Q Consensus       369 ~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~---~~~g~f~~~---~l~~-~~~~~ll~~~gI~v~~gg-----Ris  435 (459)
                      +++++++++++++++.+.|+ ++ |    +++..   +.++++.|.   +.+. ++.+.|. ++||.+.+|+     ||+
T Consensus       295 ~~~~~~~~~~~~~~l~~~L~-~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~~~~~iRis  368 (390)
T 1elu_A          295 AEERYQAICQRSEFLWRGLN-QLPH----VHCLATSAPQAGLVSFTVDSPLGHRAIVQKLE-EQRIYLRTIADPDCIRAC  368 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HSTT----EEESCSSCCSSSEEEEEECSSSCHHHHHHHHH-HTTEECEEETTTTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hcCC----cEEecCccccccEEEEEcCCCCCHHHHHHHHH-HCCEEEEecCCCCeEEEe
Confidence            67888999999999999999 76 4    56553   467777662   2344 4456665 5699998863     999


Q ss_pred             Ecc-CChhhHHHHHHHHHHH
Q 012647          436 LAG-LSLAKCEYLADAIIDS  454 (459)
Q Consensus       436 ~~~-~~~e~i~~~~~~l~~~  454 (459)
                      ++. .+++++++++++|+++
T Consensus       369 ~~~~~~~~~i~~~~~~l~~~  388 (390)
T 1elu_A          369 CHYITDEEEINHLLARLADF  388 (390)
T ss_dssp             CCTTCCHHHHHHHHHHHTTC
T ss_pred             cccCCCHHHHHHHHHHHHhh
Confidence            853 3899999999998653

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.97  E-value=2.1e-29  Score=250.91  Aligned_cols=329  Identities=15%  Similarity=0.051  Sum_probs=225.1

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhc-CC-----CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeec
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GE-----NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~-----~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (459)
                      +.+++..+.+.   +.++ +|.+.+++.+.+.. ..     ...|+...+..++|+++++++..       +++|++  +
T Consensus        47 ~~i~~~~~~~~---~~~~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-------~~~i~~--~  113 (401)
T 2bwn_A           47 DITVWCGNDYL---GMGQ-HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK-------EAALVF--S  113 (401)
T ss_dssp             EEEECSCSCTT---SGGG-CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC-------SEEEEE--S
T ss_pred             cEEEeeCCCcc---cCCC-CHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCC-------CcEEEE--C
Confidence            46777765441   2333 66899999888754 11     12355667899999999999742       567877  7


Q ss_pred             ccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCC-CCcEEEEeC
Q 012647          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP-GGSFILLHG  236 (459)
Q Consensus       158 ~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~-~~~~~ii~~  236 (459)
                      +|++ ++..+..++..+.+||+|+++.|+|..+...++..|++++.+|.+       |++.+++.++... +++++++++
T Consensus       114 sG~~-a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~le~~l~~~~~~~~~~v~~~  185 (401)
T 2bwn_A          114 SAYN-ANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDPAAPKLIAFE  185 (401)
T ss_dssp             CHHH-HHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCTTSCEEEEEE
T ss_pred             CcHH-HHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCC-------CHHHHHHHHHhhccCCceEEEEe
Confidence            7666 666653333234699999999999999999999999999999862       7889998887432 367889999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEEcCCcCcccCCCCcce
Q 012647          237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIGA  315 (459)
Q Consensus       237 ~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG~  315 (459)
                      +|+||||.+++   +++|+++|++||+++|+||+|....++......  . ...+. ...+++++||||.++++|   ||
T Consensus       186 ~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~--~-~~~~~~~~~~i~~~s~sK~~~~~G---G~  256 (401)
T 2bwn_A          186 SVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGV--A-ERDGLMHRIDIFNGTLAKAYGVFG---GY  256 (401)
T ss_dssp             SBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCH--H-HHHTCGGGCSEEEEESSSTTCSCC---EE
T ss_pred             cCcCCCCCcCC---HHHHHHHHHHcCCEEEEeccccccccCCCCcee--e-eccCccccCcEEEeechhhccCCC---CE
Confidence            99999999976   788999999999999999998844332111111  1 11111 124788999999999888   99


Q ss_pred             EEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 012647          316 MNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGK  395 (459)
Q Consensus       316 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  395 (459)
                      +++   +++..+.+....... .... +.+..++.++...++..   .  ...+++.+++++++++++.+.|+ ++|   
T Consensus       257 ~~~---~~~~~~~l~~~~~~~-~~~~-~~~~~~~~a~~~al~~~---~--~~~~~~~~~~~~~~~~~l~~~L~-~~g---  322 (401)
T 2bwn_A          257 IAA---SARMVDAVRSYAPGF-IFST-SLPPAIAAGAQASIAFL---K--TAEGQKLRDAQQMHAKVLKMRLK-ALG---  322 (401)
T ss_dssp             EEE---CHHHHHHHHHHCHHH-HTSB-CCCHHHHHHHHHHHHHH---T--SHHHHHHHHHHHHHHHHHHHHHH-HHT---
T ss_pred             Eec---CHHHHHHHHHhCcCc-eecC-CCCHHHHHHHHHHHHHH---H--hcccHHHHHHHHHHHHHHHHHHH-HCC---
Confidence            865   777555543321111 1111 23335555444443211   0  01246778899999999999999 776   


Q ss_pred             CcccccCCcceeeecCCC-----HHHHHHHHhcccEEEcCC-------C----cEEEccC-ChhhHHHHHHHHHHHHhhc
Q 012647          396 DWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD-------G----RISLAGL-SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       396 ~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g-------g----Ris~~~~-~~e~i~~~~~~l~~~~~~~  458 (459)
                       +++..+.++ ++|+.+.     .++.+.|++++||.+.|+       |    ||+++.. +++++++++++|+++++++
T Consensus       323 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~  400 (401)
T 2bwn_A          323 -MPIIDHGSH-IVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC  400 (401)
T ss_dssp             -CCBCCCSSS-CEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred             -CcccCCCCC-eEEEEeCChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence             566666666 5555442     234567765679998653       2    8998743 8899999999999988764

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.97  E-value=3.2e-30  Score=254.74  Aligned_cols=321  Identities=12%  Similarity=0.044  Sum_probs=220.6

Q ss_pred             cCCCCCCccCcHHHHHHHHHHhhcCC--CC-CCCC----CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHH
Q 012647           93 YRTEELQPYVLDVVKKAENLMLERGE--NK-EYLP----IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR  165 (459)
Q Consensus        93 ~~~~~~~~~~~~~v~~a~~~~~~~~~--~~-~Y~~----~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~  165 (459)
                      |+|.++..+.++.|.+++.+.+....  .. .|..    ..+..++|+++++++...      +++|++  |+||+++++
T Consensus         3 yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~------~~~v~~--~~g~t~a~~   74 (382)
T 4eb5_A            3 YFDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGG------GGTVVF--TSGATEANN   74 (382)
T ss_dssp             BCBTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCT------TEEEEE--ESSHHHHHH
T ss_pred             eeccCCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCC------CCeEEE--cCchHHHHH
Confidence            44555555568999999999886411  01 1432    246788999999997432      578988  999999999


Q ss_pred             HHHHHHHH--hCCCCEEEEcCCCCcchHHHhh---hCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          166 LAAALIER--YFPGAKVLISSPTWGNHKNIFN---DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       166 l~~~~~~~--~~~gd~Vlv~~p~y~~~~~~~~---~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      ++...+..  ..+||+|++++|+|+.+...+.   ..|++++.+|++  +++.+|++++++++++   +++++++++|+|
T Consensus        75 ~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~---~~~~v~~~~~~n  149 (382)
T 4eb5_A           75 LAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVG--KYGEVDVSFIDQKLRD---DTILVSVQHANN  149 (382)
T ss_dssp             HHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBC--TTSCBCHHHHHHHCCT---TEEEEECCSBCT
T ss_pred             HHHHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccC--CCCccCHHHHHHHhcC---CCeEEEEeccCC
Confidence            98544421  1689999999999998866654   479999999984  4577999999999875   688999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      |||.+++   +++|.++|++||++ |+|++|. ++...  .   .+..    .+.++++.|+||.+|++|  +||+++  
T Consensus       150 ptG~~~~---l~~i~~l~~~~~~~-i~D~a~~-~g~~~--~---~~~~----~~~di~~~s~sK~~g~~g--~G~~~~--  211 (382)
T 4eb5_A          150 EIGTIQP---VEEISEVLAGKAAL-HIDATAS-VGQIE--V---DVEK----IGADMLTISSNDIYGPKG--VGALWI--  211 (382)
T ss_dssp             TTCBBCC---HHHHHHHHTTSSEE-EEECTTT-BTTBC--C---CHHH----HTCSEEEEETGGGTCCSS--CEEEEE--
T ss_pred             CccccCC---HHHHHHHHHHCCCE-EEEcchh-cCCcc--c---Cccc----cCCCEEEeehHHhcCCCc--eEEEEE--
Confidence            9999976   67899999999999 9999976 33211  1   1211    135688999999998777  799865  


Q ss_pred             CChhHHHHHHHHHHh---hccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Q 012647          321 SSSDLAARVKSQLKR---LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDW  397 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~  397 (459)
                       +++.  .+...+..   .......+++...+.++...++      .+.+.+++++++++++++++.+.|+ +++   ++
T Consensus       212 -~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~------~~~~~~~~~~~~~~~~~~~l~~~L~-~~~---~~  278 (382)
T 4eb5_A          212 -RKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAE------ITAMEWREEAERLRRLRDRIIDNVL-KIE---ES  278 (382)
T ss_dssp             -ETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHT-TST---TE
T ss_pred             -cccc--ccCceecCCCccccccCCCccHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHHHh-hCC---Ce
Confidence             3331  01110000   0011122344444444433332      1133467888999999999999999 762   15


Q ss_pred             ccccCC----cceeee--cCCCHH-HHHHHHhcccEEEcCC-------------------------C--cEEEccC-Chh
Q 012647          398 SFILRQ----IGMFSF--TGLNKA-QSDNMTNKWHVYMTKD-------------------------G--RISLAGL-SLA  442 (459)
Q Consensus       398 ~~~~~~----~g~f~~--~~l~~~-~~~~ll~~~gI~v~~g-------------------------g--Ris~~~~-~~e  442 (459)
                      ++..+.    ++++.+  .+.+.+ +.+.|. ++||.+.+|                         +  ||+++.. +++
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~  357 (382)
T 4eb5_A          279 YLNGHPEKRLPNNVNVRFSYIEGESIVLSLD-MAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDE  357 (382)
T ss_dssp             EECSCSSSBCTTEEEEEETTSCHHHHHHHHH-HHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHH
T ss_pred             EEeCCcccCCCCEEEEEeCCcCHHHHHHHHH-HCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHH
Confidence            555543    334322  244544 455555 569999874                         3  9998843 899


Q ss_pred             hHHHHHHHHHHHHhhc
Q 012647          443 KCEYLADAIIDSYHNV  458 (459)
Q Consensus       443 ~i~~~~~~l~~~~~~~  458 (459)
                      ++++++++|+++++++
T Consensus       358 ~i~~~~~~l~~~~~~~  373 (382)
T 4eb5_A          358 DVDRLLEVLPGVIERL  373 (382)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988764

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.97  E-value=2.5e-30  Score=252.56  Aligned_cols=308  Identities=14%  Similarity=0.041  Sum_probs=215.9

Q ss_pred             cCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEE
Q 012647          101 YVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV  180 (459)
Q Consensus       101 ~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~V  180 (459)
                      ++++.+.+++.+.+.. . ..|....+..++|+++++++...      ++++++  |+||+++++++.+  ..+.+||+|
T Consensus        11 ~~~~~v~~a~~~~~~~-~-~~~~~~~~~~~l~~~la~~~g~~------~~~i~~--~~g~t~a~~~~~~--~~~~~gd~v   78 (352)
T 1iug_A           11 RLHPKALEALARPQLH-H-RTEAAREVFLKARGLLREAFRTE------GEVLIL--TGSGTLAMEALVK--NLFAPGERV   78 (352)
T ss_dssp             CCCHHHHHHHHSCCCC-T-TSHHHHHHHHHHHHHHHHHHTCS------SEEEEE--ESCHHHHHHHHHH--HHCCTTCEE
T ss_pred             CCCHHHHHHhccCCCC-c-cCHHHHHHHHHHHHHHHHHhCCC------CceEEE--cCchHHHHHHHHH--hccCCCCeE
Confidence            3489999999887642 1 22222356789999999997532      578998  9999999999843  346799999


Q ss_pred             EEcCCCCcchH--HHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 012647          181 LISSPTWGNHK--NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVI  258 (459)
Q Consensus       181 lv~~p~y~~~~--~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~  258 (459)
                      ++++|+|+.+.  ..++..|++++.+|++  .++.+|++++++   +   +++++++++|+||||.+++   +++|.++|
T Consensus        79 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~---~---~~~~v~~~~~~nptG~~~~---l~~i~~l~  147 (352)
T 1iug_A           79 LVPVYGKFSERFYEIALEAGLVVERLDYP--YGDTPRPEDVAK---E---GYAGLLLVHSETSTGALAD---LPALARAF  147 (352)
T ss_dssp             EEEECSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCTTTSCC---S---SCSEEEEESEETTTTEECC---HHHHHHHH
T ss_pred             EEEeCCchhHHHHHHHHHcCCceEEEeCC--CCCCCCHHHHhc---c---CCcEEEEEEecCCcceecC---HHHHHHHH
Confidence            99999998865  4556789999999984  356789888876   2   5668888999999999966   67899999


Q ss_pred             Hhc--CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCc-CcccCCCCcceEEEEeCChhHHHH-------
Q 012647          259 QEK--NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK-NLGLYAERIGAMNVVCSSSDLAAR-------  328 (459)
Q Consensus       259 ~~~--~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK-~~~~~G~RiG~~~~v~~~~~~~~~-------  328 (459)
                      ++|  |+++|+|++|. ++....  +   +    ...+.++++.|+|| .++++|  +||+++   +++..+.       
T Consensus       148 ~~~~~~~~li~D~a~~-~~~~~~--~---~----~~~~~d~~~~s~~K~~~~~~g--~G~~~~---~~~~~~~~~~~~~~  212 (352)
T 1iug_A          148 KEKNPEGLVGADMVTS-LLVGEV--A---L----EAMGVDAAASGSQKGLMCPPG--LGFVAL---SPRALERLKPRGYY  212 (352)
T ss_dssp             HHHCTTCEEEEECTTT-BTTBCC--C---S----GGGTCSEEEEESSSTTCCCSC--EEEEEE---CHHHHHTCCCCSST
T ss_pred             HhhCCCCEEEEECCcc-ccCcce--e---c----cccCeeEEEecCcccccCCCc--eeEEEE---CHHHHHHhhCCCce
Confidence            999  99999999975 322111  1   1    11235678999999 556555  799866   6664433       


Q ss_pred             --HHHHHHhh-ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCC-c
Q 012647          329 --VKSQLKRL-ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ-I  404 (459)
Q Consensus       329 --~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~-~  404 (459)
                        +....... ......+++..++.++...++..      .+++++.+++++++++++.+.|+ ++|    +++..+. .
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~  281 (352)
T 1iug_A          213 LDLARELKAQKEGESAWTPAINLVLAVAAVLEEV------LPRLEEHLALKAWQNALLYGVGE-EGG----LRPVPKRFS  281 (352)
T ss_dssp             TCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH------GGGHHHHHHHHHHHHHHHHHHHH-HTT----CEESCSSBC
T ss_pred             eeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH-HCC----CcccccccC
Confidence              22111111 11222345555555544444211      12257888999999999999999 776    5666553 4


Q ss_pred             ceeeecC----CCH-HHHHHHHhcccEEEcCC------C--cEEEccC-ChhhHHHHHHHHHHHHhhc
Q 012647          405 GMFSFTG----LNK-AQSDNMTNKWHVYMTKD------G--RISLAGL-SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       405 g~f~~~~----l~~-~~~~~ll~~~gI~v~~g------g--Ris~~~~-~~e~i~~~~~~l~~~~~~~  458 (459)
                      +.++|+.    .+. ++.++|.+ +||.+.+|      +  ||+++.. +++++++++++|+++++++
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  348 (352)
T 1iug_A          282 PAVAAFYLPEGVPYARVKEAFAQ-RGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI  348 (352)
T ss_dssp             TTCEEEECCTTCCHHHHHHHHHT-TTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH-CCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence            5555543    344 44556665 59999876      2  9998864 6899999999999998764

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.97  E-value=3.1e-30  Score=251.74  Aligned_cols=324  Identities=14%  Similarity=0.041  Sum_probs=215.3

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      .++|+|+.+.+    ..  .++.+.+++.+....  ...|.+..+..+||+++++++..        +++++  ++||++
T Consensus         3 ~~~i~~~~~~~----~~--p~~~~~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g~--------~~~~~--~~~gt~   64 (347)
T 1jg8_A            3 HMMIDLRSDTV----TK--PTEEMRKAMAQAEVG--DDVYGEDPTINELERLAAETFGK--------EAALF--VPSGTM   64 (347)
T ss_dssp             --CEECSCGGG----CC--CCHHHHHHHHTCCCC--CGGGTCCHHHHHHHHHHHHHHTC--------SEEEE--ESCHHH
T ss_pred             ceEEEeccccC----CC--CCHHHHHHHhcCCCC--CcccCCChHHHHHHHHHHHHhCC--------ceEEE--ecCcHH
Confidence            36789998876    33  368888888765422  24688888999999999999743        34666  788899


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcc-hH--HHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCCcEEEEeC
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGN-HK--NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHG  236 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~-~~--~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~ii~~  236 (459)
                      ++.++  +...+.+||+|++++|+|.. |.  ..++..|++++.+ ..  +++.+|++.+++++++.   .+++++++++
T Consensus        65 a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~--~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~  139 (347)
T 1jg8_A           65 GNQVS--IMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PG--KNGAMDPDDVRKAIRPRNIHFPRTSLIAIE  139 (347)
T ss_dssp             HHHHH--HHHHCCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CE--ETTEECHHHHHHHSCCSCTTSCCEEEEEEE
T ss_pred             HHHHH--HHHhcCCCCEEEEcCcchhhhccccchhhccCeEEEEe-cC--CCCccCHHHHHHHhccccccccCceEEEEe
Confidence            98877  44446799999999999865 32  2567789998888 42  34568999999998741   1268889999


Q ss_pred             CCCCCC-CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCC--CCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc
Q 012647          237 CAHNPT-GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGF--ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI  313 (459)
Q Consensus       237 ~p~NPT-G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri  313 (459)
                      +||||| |.+++.+++++|+++|++||+++|+|++|...  .+.+.  +   ...+....+  .++.|+||.++++   +
T Consensus       140 ~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~--~---~~~~~~~~d--~~~~s~sK~l~~~---~  209 (347)
T 1jg8_A          140 NTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGV--P---VKEYAGYAD--SVMFCLSKGLCAP---V  209 (347)
T ss_dssp             SSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCC--C---HHHHHHTCS--EEEEESSSTTCCS---S
T ss_pred             ccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCC--C---hHHhccccc--EEEEecccccCCC---c
Confidence            999999 99999999999999999999999999986421  11111  1   112222223  3345899999853   7


Q ss_pred             ceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012647          314 GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  393 (459)
Q Consensus       314 G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  393 (459)
                      ||+  ++.+++.++++.......  ......+.+.+.++...|+..         .+.+.+ ..++++.+.+.|+ ++| 
T Consensus       210 G~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~---------~~~~~~-~~~~~~~l~~~L~-~~~-  273 (347)
T 1jg8_A          210 GSV--VVGDRDFIERARKARKML--GGGMRQAGVLAAAGIIALTKM---------VDRLKE-DHENARFLALKLK-EIG-  273 (347)
T ss_dssp             CEE--EEECHHHHHHHHHHHHHH--TCCCSSTHHHHHHHHHHHHHS---------STTHHH-HHHHHHHHHHHHH-HHT-
T ss_pred             eEE--EEcCHHHHHHHHHHHHHc--CCchhHHHHHHHHHHHHHHHH---------HHHHHH-HHHHHHHHHHHHH-hcC-
Confidence            864  233777555543322211  111122334444433333210         112222 2346688888888 765 


Q ss_pred             CCCccc-ccCCcceeeecCC-----CH-HHHHHHHhcccEEEcCCC----cEEEc-cCChhhHHHHHHHHHHHHhhcC
Q 012647          394 GKDWSF-ILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAIIDSYHNVS  459 (459)
Q Consensus       394 ~~~~~~-~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~gg----Ris~~-~~~~e~i~~~~~~l~~~~~~~~  459 (459)
                         +++ ..+..+.|+|+.+     +. ++.++|.+ +||.+.++|    ||++. ..+++++++++++|++++++++
T Consensus       274 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~~~  347 (347)
T 1jg8_A          274 ---YSVNPEDVKTNMVILRTDNLKVNAHGFIEALRN-SGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKFS  347 (347)
T ss_dssp             ---CBCCGGGCCSSEEEEECTTSSSCHHHHHHHHHH-HTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred             ---ceeccCCCcceEEEEEcccccCCHHHHHHHHHH-CCCEEecCCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhcC
Confidence               343 2233445666533     33 45666665 699998864    99884 4489999999999999988764

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.97  E-value=8.6e-30  Score=252.80  Aligned_cols=325  Identities=11%  Similarity=0.091  Sum_probs=224.6

Q ss_pred             CCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC--CCcccHHHHHHHHHHHhcCCCCccccC-ceEEeec
Q 012647           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQG  157 (459)
Q Consensus        81 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~--~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t  157 (459)
                      ..+..++++.|..       ++++.+.+++.+.+..    .|.  +..+..++|+++++++...      ++ +|++  |
T Consensus        16 ~~~~~~~~~~g~~-------~~~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~g~~------~~~~i~~--~   76 (393)
T 2huf_A           16 VTPNKLLMGPGPS-------NAPQRVLDAMSRPILG----HLHPETLKIMDDIKEGVRYLFQTN------NIATFCL--S   76 (393)
T ss_dssp             CCCCCEECSSSCC-------CCCHHHHHHTTSCCCC----TTSHHHHHHHHHHHHHHHHHHTCC------CSEEEEE--S
T ss_pred             CCCCeEEecCCCC-------CCCHHHHHHHHhhhcc----CCCHHHHHHHHHHHHHHHHHhCCC------CCcEEEE--c
Confidence            3456677766632       2378898888776532    232  3457889999999997532      44 7888  9


Q ss_pred             ccchhHHHHHHHHHHHhCCCCEEEEcCCCCcch--HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEe
Q 012647          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (459)
Q Consensus       158 ~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~  235 (459)
                      +||+++++++...  .+.+||+|++++|+|..+  ...++..|++++.+|++  .++.+|++.+++++++.  +++++++
T Consensus        77 ~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~--~~~~v~~  150 (393)
T 2huf_A           77 ASGHGGMEATLCN--LLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSK--VGQSLSLDEIRDALLIH--KPSVLFL  150 (393)
T ss_dssp             SCHHHHHHHHHHH--HCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHHH--CCSEEEE
T ss_pred             CcHHHHHHHHHHH--HhCCCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCC--CCCCCCHHHHHHHHhcc--CCcEEEE
Confidence            9999999998433  367999999999999874  33456789999999984  35679999999999751  4567778


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC-cccCCCCcc
Q 012647          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN-LGLYAERIG  314 (459)
Q Consensus       236 ~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~~G~RiG  314 (459)
                      ++|+||||.+++   +++|.++|++||+++|+|+++. ++....     .    +...+.++++.|+||. +|++|+  |
T Consensus       151 ~~~~nptG~~~~---l~~i~~~~~~~~~~li~D~a~~-~~~~~~-----~----~~~~~~d~~~~s~sK~l~g~~G~--G  215 (393)
T 2huf_A          151 TQGDSSTGVLQG---LEGVGALCHQHNCLLIVDTVAS-LGGAPM-----F----MDRWEIDAMYTGSQKVLGAPPGI--T  215 (393)
T ss_dssp             ESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTT-BTTBCC-----C----TTTTTCSEEECCSSSTTCCCSSC--E
T ss_pred             EccCCCccccCC---HHHHHHHHHHcCCEEEEEcccc-cCCCCc-----c----hhhcCccEEEECCCcccccCCCe--E
Confidence            999999999977   7789999999999999999954 332111     1    1122467889999996 567886  9


Q ss_pred             eEEEEeCChhHHHHHHHH---HHhh----------------ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012647          315 AMNVVCSSSDLAARVKSQ---LKRL----------------ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR  375 (459)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~---~~~~----------------~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~  375 (459)
                      |+++   +++.++.+...   ....                .+....+++..++.++...++.   ..  ...+++.+++
T Consensus       216 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~--~~~~~~~~~~  287 (393)
T 2huf_A          216 PVSF---SHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAM---AC--EEGLPALIAR  287 (393)
T ss_dssp             EEEE---CHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHH---HH--HHCHHHHHHH
T ss_pred             EEEE---CHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHH---HH--HhCHHHHHHH
Confidence            9876   77744443321   0000                0111123445444444434321   10  1136778899


Q ss_pred             HHHHHHHHHHHHhhccCCCCCcccccCC---cceeeec----CCCH-HHHHHHHhcccEEEcCC------C--cEEE-cc
Q 012647          376 IKNVRQKLFDSLSAKDKSGKDWSFILRQ---IGMFSFT----GLNK-AQSDNMTNKWHVYMTKD------G--RISL-AG  438 (459)
Q Consensus       376 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~---~g~f~~~----~l~~-~~~~~ll~~~gI~v~~g------g--Ris~-~~  438 (459)
                      ++++++++.+.|+ ++|    +++..+.   .++++++    +.+. ++.++|++++||.+.+|      +  ||++ +.
T Consensus       288 ~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~  362 (393)
T 2huf_A          288 HEDCAKRLYRGLQ-DAG----FELYADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQ  362 (393)
T ss_dssp             HHHHHHHHHHHHH-HTT----CCBSSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGG
T ss_pred             HHHHHHHHHHHHH-HcC----CeeccCccccCCcEEEEEcCCCCCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccC
Confidence            9999999999999 776    4555543   3434443    3344 45667777679999886      2  9999 42


Q ss_pred             -CChhhHHHHHHHHHHHHhhc
Q 012647          439 -LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       439 -~~~e~i~~~~~~l~~~~~~~  458 (459)
                       .+++++++++++|+++++++
T Consensus       363 ~~~~e~i~~~~~~l~~~~~~~  383 (393)
T 2huf_A          363 NATTERVDRVLQVFQEAVAAV  383 (393)
T ss_dssp             GCSHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHc
Confidence             26788999999999998764

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.97  E-value=7.3e-30  Score=251.76  Aligned_cols=325  Identities=12%  Similarity=0.052  Sum_probs=224.0

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...+||+.|.|-...++  .++.+.+++.+.+...  ....| +..+..++++++++++    |.   ++++++  |+|
T Consensus        27 g~~~ld~~~~~~~~~~g~--~~~~v~~a~~~~~~~~~~~~~~y-~~~~~~~l~~~la~~~----g~---~~~v~~--~~g   94 (375)
T 2eh6_A           27 GKEYLDFVSGIGVNSLGH--AYPKLTEALKEQVEKLLHVSNLY-ENPWQEELAHKLVKHF----WT---EGKVFF--ANS   94 (375)
T ss_dssp             CCEEEESSHHHHTCTTCB--SCHHHHHHHHHHHHHCSCCCTTB-CCHHHHHHHHHHHHTS----SS---CEEEEE--ESS
T ss_pred             CCEEEEcCCcccccccCC--CCHHHHHHHHHHHHhccccCccc-CCHHHHHHHHHHHhhc----CC---CCeEEE--eCc
Confidence            356889999987222222  3788999998887532  12356 5678899999999985    22   478999  999


Q ss_pred             chhHHHHHHHHHH-Hh---CCC-CEEEEcCCCCcchHHHhhhCCCCee----eeeeecCCCC----CCCHHHHHHHHHcC
Q 012647          160 GTGSLRLAAALIE-RY---FPG-AKVLISSPTWGNHKNIFNDARVPWS----EYRYYDPKTV----GLDFEGMIADIKAA  226 (459)
Q Consensus       160 gt~a~~l~~~~~~-~~---~~g-d~Vlv~~p~y~~~~~~~~~~G~~v~----~v~~~~~~~~----~~d~e~l~~~i~~~  226 (459)
                      |+++++++.+.+. ..   .+| |+|++++|+|..+...+...+...+    ..|+.  .+.    ..|++++++++++ 
T Consensus        95 ~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~l~~~l~~-  171 (375)
T 2eh6_A           95 GTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLV--PGFSYAKLNDIDSVYKLLDE-  171 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCC--SSEEEECTTCHHHHHTTCCT-
T ss_pred             hHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCC--CCceeCCCchHHHHHHHhcC-
Confidence            9999999865432 23   678 9999999999887665544332211    01111  011    1589999988874 


Q ss_pred             CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC
Q 012647          227 PGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (459)
Q Consensus       227 ~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (459)
                        ++++++++++|||||.+ .+.+++++|.++|++||+++|+||+|.+++..+   ....+.. .....+++   ||||.
T Consensus       172 --~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~---~~~~~~~-~~~~~d~~---s~SK~  242 (375)
T 2eh6_A          172 --ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTG---EFYAYQH-FNLKPDVI---ALAKG  242 (375)
T ss_dssp             --TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSGGGG-GTCCCSEE---EECGG
T ss_pred             --CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC---cchhhhh-cCCCCCEE---EEccc
Confidence              77888889999999999 578889999999999999999999999876432   1111111 12123433   88899


Q ss_pred             cccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          306 LGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD  385 (459)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  385 (459)
                      ++ +|+|+||+++   +++    +.+.+.........+.+.+++.++...|+.          +++..++++++++++.+
T Consensus       243 ~~-~g~~~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~l~~  304 (375)
T 2eh6_A          243 LG-GGVPIGAILA---REE----VAQSFTPGSHGSTFGGNPLACRAGTVVVDE----------VEKLLPHVREVGNYFKE  304 (375)
T ss_dssp             GG-TTSCCEEEEE---EHH----HHTTCCTTSCCCSSTTCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
T ss_pred             cc-CCCCeEEEEE---cHH----HHhhhcCCCCCCCCCCCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence            99 7999999976   666    333333211122225566676666554432          22667888889999999


Q ss_pred             HHhhccCCCCCcccccCCcceeeecCC---CHHHHHHHHhcccEEEcCCC----cEEEc-cCChhhHHHHHHHHHHHH
Q 012647          386 SLSAKDKSGKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       386 ~L~~~~g~~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~gg----Ris~~-~~~~e~i~~~~~~l~~~~  455 (459)
                      .|+ +++.    ....+ .|+|+|+.+   ..++.+.|.+ +||.+.+++    ||+++ ..+++++++++++|++++
T Consensus       305 ~L~-~~~~----~~~~~-~g~~~~~~~~~~~~~~~~~l~~-~gi~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l  375 (375)
T 2eh6_A          305 KLK-ELGK----GKVKG-RGLMLGLELERECKDYVLKALE-KGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREIL  375 (375)
T ss_dssp             HHH-HTTS----SEEEE-ETTEEEEECSSCCHHHHHHHHH-TTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHC
T ss_pred             HHH-HHhc----CCceE-EEEEEEEEEcCcHHHHHHHHHH-CCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            999 7752    23333 456777655   3466777776 699998764    88876 348999999999998763

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.97  E-value=5.3e-30  Score=254.57  Aligned_cols=312  Identities=10%  Similarity=0.081  Sum_probs=219.7

Q ss_pred             CcHHHHHHHHHHhhcCCCCCCCCC--cccHHHHHHHHHHHhcCCCCccccC-ceEEeecccchhHHHHHHHHHHHhCCCC
Q 012647          102 VLDVVKKAENLMLERGENKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGTGSLRLAAALIERYFPGA  178 (459)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~--~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt~a~~l~~~~~~~~~~gd  178 (459)
                      +++.+.+++.+.+.    ..|.+.  ....++|+++++++...      ++ +|++  |+||+++++++.  ...+.+||
T Consensus        29 ~~~~v~~a~~~~~~----~~~~~~~~~~~~~l~~~la~~~~~~------~~~~v~~--~~g~t~al~~~~--~~~~~~gd   94 (396)
T 2ch1_A           29 CSKRVLTAMTNTVL----SNFHAELFRTMDEVKDGLRYIFQTE------NRATMCV--SGSAHAGMEAML--SNLLEEGD   94 (396)
T ss_dssp             CCHHHHHHTTSCCC----CTTCHHHHHHHHHHHHHHHHHHTCC------CSCEEEE--SSCHHHHHHHHH--HHHCCTTC
T ss_pred             CCHHHHHHhccccc----cCCChhHHHHHHHHHHHHHHHhCCC------CCcEEEE--CCcHHHHHHHHH--HHhcCCCC
Confidence            47888887766442    235432  34789999999997543      45 7988  999999999984  33467999


Q ss_pred             EEEEcCCCCcchH--HHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 012647          179 KVLISSPTWGNHK--NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD  256 (459)
Q Consensus       179 ~Vlv~~p~y~~~~--~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~  256 (459)
                      +|++++|+|..|.  ..++..|++++.+|.+  .++.+|++++++++++.  +++++++++||||||.+++   +++|.+
T Consensus        95 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~---~~~i~~  167 (396)
T 2ch1_A           95 RVLIAVNGIWAERAVEMSERYGADVRTIEGP--PDRPFSLETLARAIELH--QPKCLFLTHGDSSSGLLQP---LEGVGQ  167 (396)
T ss_dssp             EEEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTSCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC---CTTHHH
T ss_pred             eEEEEcCCcccHHHHHHHHHcCCceEEecCC--CCCCCCHHHHHHHHHhC--CCCEEEEECCCCCCceecC---HHHHHH
Confidence            9999999999885  4778899999999984  46789999999999752  4567778999999999987   778999


Q ss_pred             HHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHH----
Q 012647          257 VIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQ----  332 (459)
Q Consensus       257 l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~----  332 (459)
                      +|++||+++|+||+|. ++....     .    +...+..+++.|++|.++ .+.++|++++   +++.++.+...    
T Consensus       168 l~~~~~~~li~Dea~~-~g~~~~-----~----~~~~~~d~~~~s~~K~~~-~~~g~g~~~~---~~~~~~~~~~~~~~~  233 (396)
T 2ch1_A          168 ICHQHDCLLIVDAVAS-LCGVPF-----Y----MDKWEIDAVYTGAQKVLG-APPGITPISI---SPKALDVIRNRRTKS  233 (396)
T ss_dssp             HHHHTTCEEEEECTTT-BTTBCC-----C----TTTTTCCEEECCCC-CCC-CCSSCEEEEE---CHHHHHHHHTCSSCC
T ss_pred             HHHHcCCEEEEEcccc-ccCCcc-----c----hhhcCcCEEEEcCCcccc-CCCCeEEEEE---CHHHHHhhhhccCcc
Confidence            9999999999999977 332111     1    112223566789999765 3344799866   66644443210    


Q ss_pred             ---------HHh-h-----ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Q 012647          333 ---------LKR-L-----ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDW  397 (459)
Q Consensus       333 ---------~~~-~-----~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~  397 (459)
                               ... .     .+....+++..++.++...|+..     ..+.+++++++++++++++.+.|+ ++|    +
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-----~~~~~~~~~~~~~~~~~~l~~~L~-~~g----~  303 (396)
T 2ch1_A          234 KVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQI-----AEEGLENQIKRRIECAQILYEGLG-KMG----L  303 (396)
T ss_dssp             SCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHH-----HHHCHHHHHHHHHHHHHHHHHHHH-HHT----C
T ss_pred             cceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHHHHHH-HCC----C
Confidence                     000 0     01122345666666665555321     123467889999999999999999 876    5


Q ss_pred             ccccCCcc----eeeec----CCCH-HHHHHHHhcccEEEcCC------C--cEEE-c-cCChhhHHHHHHHHHHHHhhc
Q 012647          398 SFILRQIG----MFSFT----GLNK-AQSDNMTNKWHVYMTKD------G--RISL-A-GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       398 ~~~~~~~g----~f~~~----~l~~-~~~~~ll~~~gI~v~~g------g--Ris~-~-~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      ++..+.++    .++++    +.+. ++.++|++++||.+.+|      +  ||++ + ..+++++++++++|+++++++
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~  383 (396)
T 2ch1_A          304 DIFVKDPRHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKAT  383 (396)
T ss_dssp             CBSSCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred             eeccCCccccCCceEEEEcCCCCCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHh
Confidence            66666543    24443    3344 45667777679999885      2  9998 3 237889999999999998764

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.97  E-value=7e-30  Score=253.22  Aligned_cols=320  Identities=12%  Similarity=0.057  Sum_probs=215.0

Q ss_pred             CcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHh-------
Q 012647          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY-------  174 (459)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~-------  174 (459)
                      ++|.+.+++.+.+.... ..|....+..++++.+.+++....+.  ++++|++  |+||++++.++.+.+..-       
T Consensus        42 ~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~i~~--~~ggt~a~~~~~~~~~~~~~~~~~~  116 (397)
T 3f9t_A           42 VLPITRKIVDIFLETNL-GDPGLFKGTKLLEEKAVALLGSLLNN--KDAYGHI--VSGGTEANLMALRCIKNIWREKRRK  116 (397)
T ss_dssp             CCTHHHHHHHHHTTCCT-TSGGGBHHHHHHHHHHHHHHHHHTTC--TTCEEEE--ESCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHhhcC-CCcccChhHHHHHHHHHHHHHHHhCC--CCCCEEE--ecCcHHHHHHHHHHHHHHHHhhhhh
Confidence            37889999998876432 22222224444444444444333332  3678888  999999999985544222       


Q ss_pred             ----CCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHH
Q 012647          175 ----FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQ  250 (459)
Q Consensus       175 ----~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~  250 (459)
                          .+||+|+++.|+|..+...++..|++++.+|++  +++.+|++.+++++++.  +++++++++|+||||.+.   +
T Consensus       117 ~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~---~  189 (397)
T 3f9t_A          117 GLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIK--EDYTIDEKFVKDAVEDY--DVDGIIGIAGTTELGTID---N  189 (397)
T ss_dssp             TCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBC--TTSSBCHHHHHHHHHHS--CCCEEEEEBSCTTTCCBC---C
T ss_pred             cccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeC--CCCcCCHHHHHHHHhhc--CCeEEEEECCCCCCCCCC---C
Confidence                149999999999999999999999999999984  46789999999999862  566777889999999994   5


Q ss_pred             HHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH-----HHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhH
Q 012647          251 WEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV-----RLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDL  325 (459)
Q Consensus       251 l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~  325 (459)
                      +++|.++|++||+++|+||+|..+..+... .....     ...... +.++++.|++|.++ +|.|+||++  ++++..
T Consensus       190 l~~i~~l~~~~~~~li~Dea~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~-~~~~~g~~~--~~~~~~  264 (397)
T 3f9t_A          190 IEELSKIAKENNIYIHVDAAFGGLVIPFLD-DKYKKKGVNYKFDFSL-GVDSITIDPHKMGH-CPIPSGGIL--FKDIGY  264 (397)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTGGGTGGGCC-GGGCCTTCCCCCSGGG-TCSEEECCTTTTTC-CCSSCEEEE--ESSGGG
T ss_pred             HHHHHHHHHHhCCeEEEEccccchhhhhcc-cccccccccccccccc-cCCeEEEccccccC-CCCCceEEE--EeCHHH
Confidence            888999999999999999999865432100 00000     000122 45688899999876 678999984  455552


Q ss_pred             HHHHHHHHHhhccccc-----------cCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 012647          326 AARVKSQLKRLARPMY-----------SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG  394 (459)
Q Consensus       326 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  394 (459)
                          .+.+........           ...+..++.++...+.        ...+++..++++++++++.+.|+ ++|  
T Consensus       265 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------~~~~~~~~~~~~~~~~~l~~~L~-~~g--  329 (397)
T 3f9t_A          265 ----KRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLG--------REGQRKIVNECMENTLYLYKKLK-ENN--  329 (397)
T ss_dssp             ----GGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH-HTT--
T ss_pred             ----HHhhccCCccccCCCccccccccccchHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHHH-HCC--
Confidence                222211111100           1123344444444332        23356778888899999999999 876  


Q ss_pred             CCcccccCCcceeeecCC-CH-HHHHHHHhcccEEEcCCC-----cEEEcc-CChhhHHHHHHHHHHHHh
Q 012647          395 KDWSFILRQIGMFSFTGL-NK-AQSDNMTNKWHVYMTKDG-----RISLAG-LSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       395 ~~~~~~~~~~g~f~~~~l-~~-~~~~~ll~~~gI~v~~gg-----Ris~~~-~~~e~i~~~~~~l~~~~~  456 (459)
                        +.++.+..+.++|+.+ +. ++.+.|.+ +||.+.+++     ||+++. .+++++++++++|+++++
T Consensus       330 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~  396 (397)
T 3f9t_A          330 --FKPVIEPILNIVAIEDEDYKEVCKKLRD-RGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR  396 (397)
T ss_dssp             --CCBSSCCSSSEEEEECTTHHHHHHHHHH-TTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred             --CEEEcCCCccEEEEEeCCHHHHHHHHHh-CCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence              4544333344444433 33 44566666 599998875     999884 388999999999998875

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.97  E-value=1.1e-29  Score=250.97  Aligned_cols=315  Identities=15%  Similarity=0.060  Sum_probs=220.8

Q ss_pred             cCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEE
Q 012647          101 YVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV  180 (459)
Q Consensus       101 ~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~V  180 (459)
                      ++++.+.+++.+.+...  ..+.......++++.+++++...    .++++|++  |+||+++++ +  +...+.+||+|
T Consensus        12 ~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~----~~~~~v~~--~~g~t~al~-~--~~~~~~~gd~v   80 (384)
T 3zrp_A           12 TIKEDVLVAGLENNVGF--TSKEFVEALAYSLKGLRYVMGAS----KNYQPLII--PGGGTSAME-S--VTSLLKPNDKI   80 (384)
T ss_dssp             CCCHHHHHHTTCCSCCT--TSHHHHHHHHHHHHHHHHHHTCC----TTSEEEEE--ESCHHHHHH-H--GGGGCCTTCEE
T ss_pred             CCCHHHHHHhhcccccc--ccHHHHHHHHHHHHHHHHHhCCC----CCCcEEEE--cCCcHHHHH-H--HHhhcCCCCEE
Confidence            35888988887654321  12222456788899999987543    11278999  999999999 7  44457799999


Q ss_pred             EEcCCCCcc--hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 012647          181 LISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVI  258 (459)
Q Consensus       181 lv~~p~y~~--~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~  258 (459)
                      ++++|+|..  +...++..|++++.+|++  .++.+|++++++++++  .+++++++++|+||||.+++   +++|.++|
T Consensus        81 i~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l~~i~~l~  153 (384)
T 3zrp_A           81 LVVSNGVFGDRWEQIFKRYPVNVKVLRPS--PGDYVKPGEVEEEVRK--SEYKLVALTHVETSTGVREP---VKDVINKI  153 (384)
T ss_dssp             EEECSSHHHHHHHHHHTTSSCEEEEECCS--TTCCCCHHHHHHHHHH--SCEEEEEEESEETTTTEECC---HHHHHHHH
T ss_pred             EEecCCcchHHHHHHHHHcCCcEEEecCC--CCCCCCHHHHHHHHHh--CCCcEEEEeCCCCCCceECc---HHHHHHHH
Confidence            999999965  666778899999999984  3567999999999986  25788999999999999976   77899999


Q ss_pred             HhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHH---------
Q 012647          259 QEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARV---------  329 (459)
Q Consensus       259 ~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~---------  329 (459)
                      ++||+++|+|++|...... .+         ....+.++++.|+||.++ .+.++||+++   +++.++.+         
T Consensus       154 ~~~~~~li~D~a~~~~~~~-~~---------~~~~~~d~~~~s~~K~~~-~~~g~g~~~~---~~~~~~~~~~~~~~~~~  219 (384)
T 3zrp_A          154 RKYVELIVVDGVSSVGAEE-VK---------AEEWNVDVYLTASQKALG-SAAGLGLLLL---SPKALSILDSQNSIAGY  219 (384)
T ss_dssp             GGGEEEEEEECTTTTTTSC-CC---------TTTTTCSEEEEETTSTTC-CCSSEEEEEE---CHHHHHHHHHCCCSCCS
T ss_pred             HhcCCEEEEECcccccCcc-cc---------ccccCCCEEEecCccccc-CCCceEEEEE---CHHHHHHhcCCCCCCcc
Confidence            9999999999996643321 11         112245789999999885 2344899977   77766555         


Q ss_pred             ---HHHHHh-h------ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccc
Q 012647          330 ---KSQLKR-L------ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF  399 (459)
Q Consensus       330 ---~~~~~~-~------~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~  399 (459)
                         ...+.. .      ....+.+++...+.++...+.   +..  ...+++++++++++++++.+.|+ ++|    +++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~---~~~--~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~  289 (384)
T 3zrp_A          220 YLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFR---LIE--KEGIENRIKRHTMVASAIRAGLE-ALG----LEI  289 (384)
T ss_dssp             TTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH---HHH--HHCHHHHHHHHHHHHHHHHHHHH-HTT----CCB
T ss_pred             cccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHH---HHH--hcCHHHHHHHHHHHHHHHHHHHH-HCC----CeE
Confidence               111111 0      111112444444443333332   111  12367889999999999999999 876    466


Q ss_pred             ccCC----cceeeecC---CCH-HHHHHHHhcccEEEcCCC-------cEEEccC-ChhhHHHHHHHHHHHHhhc
Q 012647          400 ILRQ----IGMFSFTG---LNK-AQSDNMTNKWHVYMTKDG-------RISLAGL-SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       400 ~~~~----~g~f~~~~---l~~-~~~~~ll~~~gI~v~~gg-------Ris~~~~-~~e~i~~~~~~l~~~~~~~  458 (459)
                      ..+.    ++.++|+.   .+. ++.+.|.+ +||.+.+|.       ||++... +++++++++++|+++++++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~  363 (384)
T 3zrp_A          290 VARRPESYSNTVTGVILKVADPQKVLAGTVN-EGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRKL  363 (384)
T ss_dssp             SCSSGGGBCSSEEEEECSSSCHHHHHHHHHT-TTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcccccCccEEEEECCCCCHHHHHHHHHH-CCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHHc
Confidence            6555    34554443   344 44556665 599998875       9997643 8899999999999998764

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.97  E-value=2.1e-29  Score=250.82  Aligned_cols=324  Identities=10%  Similarity=0.077  Sum_probs=228.5

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhc-CCC---CCCC--CCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GEN---KEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~~---~~Y~--~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (459)
                      +...|||+.|.|+   +.. .++.+.+++.+.+.. ...   ..|.  ...+..++|+++++++..       ++.|++ 
T Consensus        44 g~~~id~~~~~~~---g~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~-------~~~i~~-  111 (401)
T 1fc4_A           44 GSHVINFCANNYL---GLA-NHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGM-------EDAILY-  111 (401)
T ss_dssp             SCEEEECCCSCTT---SCT-TCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTC-------SEEEEE-
T ss_pred             CccEEEeeccCcc---ccc-CCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCC-------CcEEEe-
Confidence            4578999999652   221 278899998887753 211   1232  256789999999999732       244544 


Q ss_pred             ecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCC---CcEE
Q 012647          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG---GSFI  232 (459)
Q Consensus       156 ~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~---~~~~  232 (459)
                        .+|++++..+.  ...+.+||.|+++.|+|..+...++..|++++.+|.       .|++++++.+++..+   ++++
T Consensus       112 --~sGs~a~~~~~--~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~  180 (401)
T 1fc4_A          112 --SSCFDANGGLF--ETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARHVL  180 (401)
T ss_dssp             --SCHHHHHHTTH--HHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSEE
T ss_pred             --CChHHHHHHHH--HHHcCCCCEEEEcchhHHHHHHHHHHcCCceEEECC-------CCHHHHHHHHHHhhccCCCceE
Confidence              55577888873  334679999999999998888888999999888863       478999988875211   5778


Q ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCC-CCCCCChhHHHHHHh-cCCeEEEEEcCCcCc-cc
Q 012647          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFAS-GSLDNDASSVRLFAT-RGMELLVAQSYSKNL-GL  308 (459)
Q Consensus       233 ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~-~~~~-~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~-~~  308 (459)
                      +++++||||||.+++   +++|.++|++||+++|+||+|. ++.+ .+  ..   .....+ ..+.+++++||||.+ ++
T Consensus       181 v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g--~~---~~~~~~~~~~~di~~~s~sK~~~~~  252 (401)
T 1fc4_A          181 IATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENG--RG---SHEYCDVMGRVDIITGTLGKALGGA  252 (401)
T ss_dssp             EEEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTS--CC---HHHHTTCTTCCSEEEEESSSTTCSS
T ss_pred             EEEeCCcCCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCC--Cc---cHHHcCCCcCCcEEEecchhhccCC
Confidence            888999999999987   7889999999999999999995 7753 21  11   112222 124579999999999 65


Q ss_pred             CCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012647          309 YAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  388 (459)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  388 (459)
                      +|   ||+++   +++.++.+.......  ....+++.+++.++...|+..       +..++.+++++++++++.+.|+
T Consensus       253 ~g---G~~~~---~~~~~~~l~~~~~~~--~~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~  317 (401)
T 1fc4_A          253 SG---GYTAA---RKEVVEWLRQRSRPY--LFSNSLAPAIVAASIKVLEMV-------EAGSELRDRLWANARQFREQMS  317 (401)
T ss_dssp             SC---EEEEE---CHHHHHHHHHHCHHH--HHSCCCCHHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CC---EEEEc---CHHHHHHHHHhCcCc--eeCCCCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHH
Confidence            54   99866   788555554322111  112356667777665554321       1135778889999999999999


Q ss_pred             hccCCCCCcccccCCcceeeecCCC-----HHHHHHHHhcccEEEcCC-------C----cEEEcc-CChhhHHHHHHHH
Q 012647          389 AKDKSGKDWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD-------G----RISLAG-LSLAKCEYLADAI  451 (459)
Q Consensus       389 ~~~g~~~~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g-------g----Ris~~~-~~~e~i~~~~~~l  451 (459)
                       ++|    +++.+ ..+.|+|+.+.     .++.+.|.+ +||.+.++       +    ||+++. .+++++++++++|
T Consensus       318 -~~g----~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l  390 (401)
T 1fc4_A          318 -AAG----FTLAG-ADHAIIPVMLGDAVVAQKFARELQK-EGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAF  390 (401)
T ss_dssp             -HTT----CCBCC-SSSSEEEEEEECHHHHHHHHHHHHH-TTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             -HcC----CcccC-CCCCEEEEEcCChHHHHHHHHHHHH-CCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHH
Confidence             876    45554 45667676542     234556666 59998865       1    899873 3899999999999


Q ss_pred             HHHHhhc
Q 012647          452 IDSYHNV  458 (459)
Q Consensus       452 ~~~~~~~  458 (459)
                      +++++++
T Consensus       391 ~~~~~~~  397 (401)
T 1fc4_A          391 TRIGKQL  397 (401)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998875

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.97  E-value=7.9e-30  Score=255.67  Aligned_cols=324  Identities=14%  Similarity=0.096  Sum_probs=224.6

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhh--cCCCC----C----CCCCcccHHHHHHHHHHHhcCCCCccccCc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE--RGENK----E----YLPIEGLAAFNKVTAELLFGADNSVLKEQR  151 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~--~~~~~----~----Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~  151 (459)
                      +++.|.|..+.+    +  ++++.+.+++.+.+.  .....    .    |.......++++.+++++...      +++
T Consensus        20 ~~~~iyld~~~~----~--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~------~~~   87 (423)
T 3lvm_A           20 MKLPIYLDYSAT----T--PVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGAD------PRE   87 (423)
T ss_dssp             CCSSEECBTTTC----C--CCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCC------GGG
T ss_pred             cCCCEeecCCCc----C--CCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCC------CCe
Confidence            356777776554    3  348999999988775  21100    0    111235578999999987542      678


Q ss_pred             eEEeecccchhHHHHHHHHHHH-h-CCCCEEEEcCCCCcchHHHh---hhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC
Q 012647          152 VATVQGLSGTGSLRLAAALIER-Y-FPGAKVLISSPTWGNHKNIF---NDARVPWSEYRYYDPKTVGLDFEGMIADIKAA  226 (459)
Q Consensus       152 i~~~~t~ggt~a~~l~~~~~~~-~-~~gd~Vlv~~p~y~~~~~~~---~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~  226 (459)
                      |++  |+||+++++++.+.+.. + .+||+|+++.|+|+.+...+   +..|++++.+|++  .++.+|++++++++++ 
T Consensus        88 v~~--~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~-  162 (423)
T 3lvm_A           88 IVF--TSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQ--RNGIIDLKELEAAMRD-  162 (423)
T ss_dssp             EEE--ESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCC--TTSCCCHHHHHHHCCT-
T ss_pred             EEE--eCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccC--CCCccCHHHHHHhcCC-
Confidence            999  99999999998554321 1 27999999999999887776   4559999999984  4678999999999976 


Q ss_pred             CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc
Q 012647          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (459)
Q Consensus       227 ~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  306 (459)
                        +++++++++|+||||.+++   +++|.++|++||+++|+||+|...... .     .    ....+.++++.|+||.+
T Consensus       163 --~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~-~-----~----~~~~~~di~~~s~sK~~  227 (423)
T 3lvm_A          163 --DTILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKLP-I-----D----LSQLKVDLMSFSGHKIY  227 (423)
T ss_dssp             --TEEEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTSC-C-----C----TTTSCCSEEEEESTTTT
T ss_pred             --CcEEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcCCCC-c-----C----hhhcCCCEEEechHHhc
Confidence              7889999999999999977   777999999999999999997643211 1     0    11224568899999999


Q ss_pred             ccCCCCcceEEEEeCChhHHHHHHHHHHhhcc-------ccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012647          307 GLYAERIGAMNVVCSSSDLAARVKSQLKRLAR-------PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV  379 (459)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~  379 (459)
                      |++|  +||+++   +++..+.    +.....       ....+++..++.++...+.   +   +.+.+++.+++++++
T Consensus       228 g~~g--~G~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~---~---~~~~~~~~~~~~~~~  292 (423)
T 3lvm_A          228 GPKG--IGALYV---RRKPRVR----IEAQMHGGGHERGMRSGTLPVHQIVGMGEAYR---I---AKEEMATEMERLRGL  292 (423)
T ss_dssp             SCSS--CEEEEE---CBTTBCC----CCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHH---H---HHHHHHHHHHHHHHH
T ss_pred             CCCC--eEEEEE---eccccCC----CCccccCCcccccccCCCCCHHHHHHHHHHHH---H---HHHHHHHHHHHHHHH
Confidence            8777  899866   5442221    222111       1122344444444433332   1   123368889999999


Q ss_pred             HHHHHHHHhhccCCCCCcccccCCc----cee-ee-cCCCHHHHHHHHhcccEEEcCC----------------------
Q 012647          380 RQKLFDSLSAKDKSGKDWSFILRQI----GMF-SF-TGLNKAQSDNMTNKWHVYMTKD----------------------  431 (459)
Q Consensus       380 ~~~l~~~L~~~~g~~~~~~~~~~~~----g~f-~~-~~l~~~~~~~ll~~~gI~v~~g----------------------  431 (459)
                      ++++.+.|+ +++   ++.+..+.+    +++ ++ .+.+.+.+...+.+  |.+.+|                      
T Consensus       293 ~~~l~~~L~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~  366 (423)
T 3lvm_A          293 RNRLWNGIK-DIE---EVYLNGDLEHGAPNILNVSFNYVEGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDE  366 (423)
T ss_dssp             HHHHHHHHT-TST---TEEEESCSTTBCTTEEEEEETTSCHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHH
T ss_pred             HHHHHHHHh-cCC---CEEEeCCccccCCCeEEEEeCCCCHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCcc
Confidence            999999998 872   155555443    222 22 34566555555554  777765                      


Q ss_pred             ---C--cEEEccC-ChhhHHHHHHHHHHHHhhc
Q 012647          432 ---G--RISLAGL-SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       432 ---g--Ris~~~~-~~e~i~~~~~~l~~~~~~~  458 (459)
                         +  ||+++.. +++++++++++|+++++++
T Consensus       367 ~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~  399 (423)
T 3lvm_A          367 LAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRL  399 (423)
T ss_dssp             HHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence               3  9998744 7899999999999998764

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.97  E-value=1.1e-29  Score=253.21  Aligned_cols=328  Identities=13%  Similarity=0.069  Sum_probs=221.9

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      +...+|++.|.+.+..+.  .+|.+.+++.+.+.... ...+.+.....++++.+++++.        .+++++  |+||
T Consensus        38 g~~~lD~~~~~~~~~lg~--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--------~~~v~~--~~gg  105 (406)
T 4adb_A           38 GKEYIDFAGGIAVNALGH--AHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATF--------ADRVFF--CNSG  105 (406)
T ss_dssp             CCEEEESSHHHHTCTTCB--TCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHSS--------CSEEEE--ESSH
T ss_pred             CCEEEECCCchhhcccCC--CCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhCC--------CCeEEE--eCcH
Confidence            356899999965344444  27899999998886521 1122244556778888888742        358988  9999


Q ss_pred             hhHHHHHHHHHHHh-----CCC-CEEEEcCCCCcchHHHhhhCCC-------------CeeeeeeecCCCCCCCHHHHHH
Q 012647          161 TGSLRLAAALIERY-----FPG-AKVLISSPTWGNHKNIFNDARV-------------PWSEYRYYDPKTVGLDFEGMIA  221 (459)
Q Consensus       161 t~a~~l~~~~~~~~-----~~g-d~Vlv~~p~y~~~~~~~~~~G~-------------~v~~v~~~~~~~~~~d~e~l~~  221 (459)
                      +++++++.+++...     .+| |+|++++|+|..+.......+.             ++..+|.       .|++++++
T Consensus       106 ~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~  178 (406)
T 4adb_A          106 AEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-------NDINSASA  178 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-------TCHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-------CcHHHHHH
Confidence            99999985544221     055 9999999999988554444333             2223322       37999998


Q ss_pred             HHHcCCCCcEEEEeCCCCCCCCCCC--CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012647          222 DIKAAPGGSFILLHGCAHNPTGIDP--TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (459)
Q Consensus       222 ~i~~~~~~~~~ii~~~p~NPTG~~~--s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~  299 (459)
                      ++++   ++++++++ |+||||.++  +.+++++|+++|++||+++|+||+|.++++.+   ....... .+...+++  
T Consensus       179 ~l~~---~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g---~~~~~~~-~~~~~d~~--  248 (406)
T 4adb_A          179 LIDD---STCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTG---ELYAYMH-YGVTPDLL--  248 (406)
T ss_dssp             TCST---TEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS---SSSHHHH-HTCCCSEE--
T ss_pred             HhcC---CeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc---hhHHHHh-cCCCCCEE--
Confidence            8874   78888877 999999998  99999999999999999999999999887543   1222222 23334544  


Q ss_pred             EcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012647          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV  379 (459)
Q Consensus       300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~  379 (459)
                       ||||.++ +|+|+||+++   +++    +.+.+.........+.+.+++.++...|+...        .++..++++++
T Consensus       249 -t~sK~~~-~G~r~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--------~~~~~~~~~~~  311 (406)
T 4adb_A          249 -TTAKALG-GGFPVGALLA---TEE----CARVMTVGTHGTTYGGNPLASAVAGKVLELIN--------TPEMLNGVKQR  311 (406)
T ss_dssp             -EECGGGG-TTSCCEEEEE---CHH----HHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHS--------SHHHHHHHHHH
T ss_pred             -Eechhhc-CCCCeEEEEE---cHH----HHhhhccCCcCCCCCCCHHHHHHHHHHHHHHH--------hcCHHHHHHHH
Confidence             6799999 9999999876   777    44444443333344677777777765553211        04566777778


Q ss_pred             HHHHHHHHhhccCCC-CCcccccCCcceeeecCC------C-HHHHHHHHhcccEEEcCCC----cEEEcc-CChhhHHH
Q 012647          380 RQKLFDSLSAKDKSG-KDWSFILRQIGMFSFTGL------N-KAQSDNMTNKWHVYMTKDG----RISLAG-LSLAKCEY  446 (459)
Q Consensus       380 ~~~l~~~L~~~~g~~-~~~~~~~~~~g~f~~~~l------~-~~~~~~ll~~~gI~v~~gg----Ris~~~-~~~e~i~~  446 (459)
                      ++++.+.|+ +++.. ..+.... ..|.++|+.+      + .++.+.|++ +||.+.++|    ||+++. .+++++++
T Consensus       312 ~~~l~~~l~-~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~~iRi~~~~~~~~e~i~~  388 (406)
T 4adb_A          312 HDWFVERLN-TINHRYGLFSEVR-GLGLLIGCVLNADYAGQAKQISQEAAK-AGVMVLIAGGNVVRFAPALNVSEEEVTT  388 (406)
T ss_dssp             HHHHHHHHH-HHHHHHCCEEEEE-EETTEEEEEECTTTTTCHHHHHHHHHH-TTEECEESSTTEEEECCCTTCCHHHHHH
T ss_pred             HHHHHHHHH-HHHHhCCCceEEE-EEEEEEEEEEeCCcHHHHHHHHHHHHH-CCcEEeecCCCeEEEECCCCCCHHHHHH
Confidence            888888877 54210 0011111 2244555422      2 345666666 499999876    885433 28999999


Q ss_pred             HHHHHHHHHhhc
Q 012647          447 LADAIIDSYHNV  458 (459)
Q Consensus       447 ~~~~l~~~~~~~  458 (459)
                      ++++|+++++++
T Consensus       389 ~~~~l~~~l~~~  400 (406)
T 4adb_A          389 GLDRFAAACEHF  400 (406)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.97  E-value=5.2e-29  Score=250.27  Aligned_cols=327  Identities=11%  Similarity=0.021  Sum_probs=227.5

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhc-CC-CCCCC----CCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GE-NKEYL----PIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~-~~~Y~----~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (459)
                      +.+.|||+.|.|+   +.. .++.+.+++.+.+.. +. ...|.    +.....++++.+++++..       + +.++ 
T Consensus        63 g~~~id~~~~~~l---g~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g~-------~-~~i~-  129 (427)
T 2w8t_A           63 GKDTILLGTYNYM---GMT-FDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGT-------T-GAIV-  129 (427)
T ss_dssp             TEEEEECSCCCTT---CGG-GCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHTC-------S-EEEE-
T ss_pred             CceEEEEECcccc---cCC-CCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhCC-------C-ceEE-
Confidence            4578999999752   322 278899998887754 21 12222    234458999999999732       3 3444 


Q ss_pred             ecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCC-CcEEEE
Q 012647          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG-GSFILL  234 (459)
Q Consensus       156 ~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~-~~~~ii  234 (459)
                       +.+|++++..+.  ...+.+||.|+++.|+|..+...++..|++++.+|.       +|++.+++.+++..+ ++++++
T Consensus       130 -~~sGs~a~~~al--~~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~  199 (427)
T 2w8t_A          130 -FSTGYMANLGII--STLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRH-------NSVEDLDKRLGRLPKEPAKLVV  199 (427)
T ss_dssp             -ESCHHHHHHHHH--HHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEE
T ss_pred             -ecCcHHHHHHHH--HHhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeCC-------CCHHHHHHHHHhccCCCCeEEE
Confidence             567777888773  334679999999999999999999999999888763       589999999986433 678888


Q ss_pred             eCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEEcCCcCcccCCCCc
Q 012647          235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAERI  313 (459)
Q Consensus       235 ~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~Ri  313 (459)
                      +++++||||.+++   +++|.++|++||+++|+||+|..+.++..   ...+....+ ..+.++++.||||.+|++|   
T Consensus       200 ~~~~~n~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~---g~~~~~~~~~~~~~di~~~s~sK~~g~~g---  270 (427)
T 2w8t_A          200 LEGVYSMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPN---GRGVYEAQGLEGQIDFVVGTFSKSVGTVG---  270 (427)
T ss_dssp             EESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTT---SCCHHHHTTCTTCCSEEEEESSSTTCSCC---
T ss_pred             EcCCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCC---CCchHhhcCCCcCCcEEEecchhhhccCC---
Confidence            9999999999976   78899999999999999999998776421   112222222 2245899999999999777   


Q ss_pred             ceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012647          314 GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  393 (459)
Q Consensus       314 G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  393 (459)
                      ||+++   ++++++.+........ . ..+.+...+.++...|+..       +++++.+++++++++++.+.|+ ++| 
T Consensus       271 G~v~~---~~~l~~~l~~~~~~~~-~-~~~~~~~~~aa~~~al~~~-------~~~~~~~~~~~~~~~~l~~~L~-~~g-  336 (427)
T 2w8t_A          271 GFVVS---NHPKFEAVRLACRPYI-F-TASLPPSVVATATTSIRKL-------MTAHEKRERLWSNARALHGGLK-AMG-  336 (427)
T ss_dssp             EEEEE---CCTTGGGGGGTCHHHH-S-SCCCCHHHHHHHHHHHHHH-------TSCHHHHHHHHHHHHHHHHHHH-HHT-
T ss_pred             CEEEe---CHHHHHHHHHhccccc-c-cCCCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHH-HcC-
Confidence            99866   6674443332111111 1 1233444434433333211       1136778899999999999999 876 


Q ss_pred             CCCcccc-cCCcceeeecCCC-----HHHHHHHHhcccEEEcCC---------C--cEEEccC-ChhhHHHHHHHHHHHH
Q 012647          394 GKDWSFI-LRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD---------G--RISLAGL-SLAKCEYLADAIIDSY  455 (459)
Q Consensus       394 ~~~~~~~-~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g---------g--Ris~~~~-~~e~i~~~~~~l~~~~  455 (459)
                         +.+. .+..|.++|+.+.     .++.+.|+++ ||.+.++         +  ||+++.. +++++++++++|++++
T Consensus       337 ---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l  412 (427)
T 2w8t_A          337 ---FRLGTETCDSAIVAVMLEDQEQAAMMWQALLDG-GLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAG  412 (427)
T ss_dssp             ---CEESCSSCCSSEEEEEESSHHHHHHHHHHHHHT-TEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred             ---CcccCCCCCCCEEEEEECCHHHHHHHHHHHHHC-CeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence               4655 4413445565432     2456677765 9998875         2  8998753 8999999999999998


Q ss_pred             hhc
Q 012647          456 HNV  458 (459)
Q Consensus       456 ~~~  458 (459)
                      +++
T Consensus       413 ~~~  415 (427)
T 2w8t_A          413 RAV  415 (427)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            764

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.97  E-value=2.3e-29  Score=246.14  Aligned_cols=327  Identities=14%  Similarity=0.030  Sum_probs=226.4

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      ++++|||+.+.+    ..  .++.+.+++.+.+.. ....|++.....++++.+++++. .      +.+|++  |+||+
T Consensus         6 ~~~~id~~~~~~----~~--~~~~v~~a~~~~~~~-~~~~~~~~~~~~~l~~~la~~~g-~------~~~v~~--~~~gt   69 (356)
T 1v72_A            6 RPPALGFSSDNI----AG--ASPEVAQALVKHSSG-QAGPYGTDELTAQVKRKFCEIFE-R------DVEVFL--VPTGT   69 (356)
T ss_dssp             CCCCCBCSCGGG----CC--CCHHHHHHHHHTTSS-CCCSTTCSHHHHHHHHHHHHHHT-S------CCEEEE--ESCHH
T ss_pred             CCceEeeccCCc----cC--CCHHHHHHHHhhccC-cccccccchHHHHHHHHHHHHhC-C------CCcEEE--eCCcc
Confidence            467899998765    32  378999999887632 23567666677888888888863 1      456888  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH--hhhC--CCCeeeeeeecCCCCCCCHHHHHH-HHHcC----CCCcEE
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNI--FNDA--RVPWSEYRYYDPKTVGLDFEGMIA-DIKAA----PGGSFI  232 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~--~~~~--G~~v~~v~~~~~~~~~~d~e~l~~-~i~~~----~~~~~~  232 (459)
                      +++.++  +...+.+||+|+++.|+|..+...  +...  |++++.+|.+   ++.+|++++++ ++++.    .+++++
T Consensus        70 ~a~~~a--l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~~~  144 (356)
T 1v72_A           70 AANALC--LSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQPAC  144 (356)
T ss_dssp             HHHHHH--HHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEEEE
T ss_pred             HHHHHH--HHHhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC---CCeEcHHHHHHHhhhcchhhccCCceE
Confidence            999988  333356999999999998766554  6666  9999999873   36899999999 88641    125788


Q ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCC--CCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCC
Q 012647          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFAS--GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA  310 (459)
Q Consensus       233 ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G  310 (459)
                      +++++||| ||.+++.+++++|+++|++||+++|+|++|..+..  .+.......    .....+ +++.|+||. +   
T Consensus       145 v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~----~~~~~d-~~~~s~sK~-g---  214 (356)
T 1v72_A          145 VSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMT----WKAGVD-ALSFGATKN-G---  214 (356)
T ss_dssp             EEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTT----GGGTCC-EEEECCGGG-T---
T ss_pred             EEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhh----hhhcCC-EEEEecccC-C---
Confidence            88888987 99999999999999999999999999999864321  111111000    011223 445699998 3   


Q ss_pred             CCcc--eEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012647          311 ERIG--AMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  388 (459)
Q Consensus       311 ~RiG--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  388 (459)
                      .|+|  |+++   +++.++.+......  ..........++..+...+.+..    |    .+..++++++++++.+.|+
T Consensus       215 ~~~G~g~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~----~----~~~~~~~~~~~~~l~~~L~  281 (356)
T 1v72_A          215 VLAAEAIVLF---NTSLATEMSYRRKR--AGHLSSKMRFLSAQIDAYLTDDL----W----LRNARKANAAAQRLAQGLE  281 (356)
T ss_dssp             CSSCEEEEES---SGGGHHHHHHHHHH--TTCCCSSTHHHHHHHHHHTSTTH----H----HHHHHHHHHHHHHHHHHHT
T ss_pred             CcCccEEEEE---CHHHHhhHHHHhhc--cCchhhhHHHHHHHHHHHHHhhh----H----HHHHHHHHHHHHHHHHHHh
Confidence            3577  5533   77766555432211  11111223334333445555432    2    3456677888899999998


Q ss_pred             hcc-CCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCC----C--cEEEccC-ChhhHHHHHHHHHHHHhhc
Q 012647          389 AKD-KSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKD----G--RISLAGL-SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       389 ~~~-g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~g----g--Ris~~~~-~~e~i~~~~~~l~~~~~~~  458 (459)
                       ++ |    +++..+.+++|+|+.+..++.++|.+ +||.+.+|    +  ||++... +++++++++++|++++++.
T Consensus       282 -~~~g----~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~  353 (356)
T 1v72_A          282 -GLGG----VEVLGGTEANILFCRLDSAMIDALLK-AGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAADRT  353 (356)
T ss_dssp             -TCTT----EEEESCCCSSEEEEEECHHHHHHHHH-TTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC---
T ss_pred             -hCCC----cEEccCCCccEEEEEcCHHHHHHHHh-cCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence             75 4    56666777888888877777778765 59999865    3  9987643 7899999999999887653

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.97  E-value=4.8e-29  Score=247.51  Aligned_cols=327  Identities=12%  Similarity=0.074  Sum_probs=225.4

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      +...+|++.+.+....++  .+|.+.+++.+.+.... ...+.+..-..++++.+++++.        ++++++  ++||
T Consensus        35 g~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--------~~~v~~--~~~g  102 (392)
T 3ruy_A           35 GNRYMDLLSAYSAVNQGH--RHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLTN--------KEMVLP--MNTG  102 (392)
T ss_dssp             CCEEEESSHHHHTCTTCB--TCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHHT--------CSEEEE--ESSH
T ss_pred             CCEEEEcCCChhhhccCC--CCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC--------CCEEEE--eCcH
Confidence            356889998865222233  37899999998875421 1112244556788888888863        478999  9999


Q ss_pred             hhHHHHHHHHHHHh--------CCCCEEEEcCCCCcchHHHhhhCCCC-------------eeeeeeecCCCCCCCHHHH
Q 012647          161 TGSLRLAAALIERY--------FPGAKVLISSPTWGNHKNIFNDARVP-------------WSEYRYYDPKTVGLDFEGM  219 (459)
Q Consensus       161 t~a~~l~~~~~~~~--------~~gd~Vlv~~p~y~~~~~~~~~~G~~-------------v~~v~~~~~~~~~~d~e~l  219 (459)
                      +++++++.+++...        ..||+|+++.|+|..+...+...+..             +..++.       .|++++
T Consensus       103 t~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l  175 (392)
T 3ruy_A          103 AEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY-------GDLEAL  175 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT-------TCHHHH
T ss_pred             HHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc-------ccHHHH
Confidence            99999986654332        23689999999997665444333221             222222       289999


Q ss_pred             HHHHHcCCCCcEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012647          220 IADIKAAPGGSFILLHGCAHNPTGIDPTPEQ-WEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (459)
Q Consensus       220 ~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~-l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (459)
                      ++++++   +++++++++||||||.+++.++ +++|+++|++||+++|+||+|.+++..+.   ..... ..+...+++ 
T Consensus       176 ~~~l~~---~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~---~~~~~-~~~~~~d~~-  247 (392)
T 3ruy_A          176 KAAITP---NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK---VFACD-WDNVTPDMY-  247 (392)
T ss_dssp             HHHCCT---TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSS---SSGGG-GGTCCCSEE-
T ss_pred             HHHhcc---CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcccc---chhhh-ccCCCCCEE-
Confidence            999874   7889999999999999996555 99999999999999999999988875431   11111 112223443 


Q ss_pred             EEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012647          299 AQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  377 (459)
Q Consensus       299 ~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  377 (459)
                        ||||.++ +| +|+||+++   +++    +.+.+.........+.+.+++.++...|+..      .+  ++.+++++
T Consensus       248 --~~SK~l~-gG~~~~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~------~~--~~~~~~~~  309 (392)
T 3ruy_A          248 --ILGKALG-GGVFPISCAAA---NRD----ILGVFEPGSHGSTFGGNPLACAVSIAALEVL------EE--EKLTERSL  309 (392)
T ss_dssp             --EECGGGG-TTTSCCEEEEE---CHH----HHTTCCTTSSCCSSTTCHHHHHHHHHHHHHH------HH--TTHHHHHH
T ss_pred             --EEchhhh-CChhhhEEEEE---CHH----HHhhhccCCcCCCCCCCHHHHHHHHHHHHHH------Hh--hhHHHHHH
Confidence              7789876 46 99999976   777    4444443333334466777777776665421      11  56788899


Q ss_pred             HHHHHHHHHHhhccCCCCCcccccCCcceeeec--CCCHHHHHHHHhcccEEEcCCC----cEEEccC-ChhhHHHHHHH
Q 012647          378 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT--GLNKAQSDNMTNKWHVYMTKDG----RISLAGL-SLAKCEYLADA  450 (459)
Q Consensus       378 ~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~--~l~~~~~~~ll~~~gI~v~~gg----Ris~~~~-~~e~i~~~~~~  450 (459)
                      ++++++.+.|+ +++.+ .+....+.++++.|.  +...++.+.|.+ +||.+.|++    ||+++.. +++++++++++
T Consensus       310 ~~~~~l~~~L~-~~~~~-~~~~~~~~g~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~  386 (392)
T 3ruy_A          310 QLGEKLVGQLK-EIDNP-MITEVRGKGLFIGIELNEPARPYCEQLKA-AGLLCKETHENVIRIAPPLVISEEDLEWAFQK  386 (392)
T ss_dssp             HHHHHHHHHHT-TCCCT-TEEEEEEETTEEEEEESSCSHHHHHHHHT-TTEECCCBTTTEEEECCCTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HhcCC-CceEEEeeeeEEEEEEcchHHHHHHHHHH-CCcEEecCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999 87532 234455666666554  223556667665 699999986    8884432 89999999999


Q ss_pred             HHHHHh
Q 012647          451 IIDSYH  456 (459)
Q Consensus       451 l~~~~~  456 (459)
                      |+++++
T Consensus       387 l~~~l~  392 (392)
T 3ruy_A          387 IKAVLS  392 (392)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            998763

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.97  E-value=1.8e-29  Score=247.58  Aligned_cols=323  Identities=14%  Similarity=0.038  Sum_probs=222.1

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCC--CcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      ++++|+.| |    ..  .++.|.+++.+.+    .+.|..  ..+..++|+++++++. .   +.+++++++  |+||+
T Consensus         4 ~~~~~~~g-p----~~--~~~~v~~a~~~~~----~~~~~~~~~~~~~~l~~~la~~~g-~---~~~~~~v~~--~~g~t   66 (366)
T 1m32_A            4 NYLLLTPG-P----LT--TSRTVKEAMLFDS----CTWDDDYNIGVVEQIRQQLTALAT-A---SEGYTSVLL--QGSGS   66 (366)
T ss_dssp             -CEECSSS-S----CC--CCHHHHHTTCCCC----CTTSHHHHTTTHHHHHHHHHHHHC-S---SSSEEEEEE--ESCHH
T ss_pred             ccccccCC-C----cC--CCHHHHHHHhhhh----cCCCHHHHHHHHHHHHHHHHHHhC-C---CCcCcEEEE--ecChH
Confidence            46888888 5    21  3788888876643    122321  1688999999999975 2   112357999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcC-CCCcc-hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISS-PTWGN-HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~-p~y~~-~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~  239 (459)
                      ++++++.  ...+.+||+|++++ |+|.. +...++..|++++.+|++  .++.+|++++++++++. .+++++++++|+
T Consensus        67 ~a~~~~~--~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~  141 (366)
T 1m32_A           67 YAVEAVL--GSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCG--EVARPDVQAIDAILNAD-PTISHIAMVHSE  141 (366)
T ss_dssp             HHHHHHH--HHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECC--TTSCCCHHHHHHHHHHC-TTCCEEEEESEE
T ss_pred             HHHHHHH--HHhcCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhcC-CCeEEEEEeccc
Confidence            9999984  33356999988877 55543 667778889999999984  45679999999999863 245677789999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc-ccCCCCcceEEE
Q 012647          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNV  318 (459)
Q Consensus       240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~  318 (459)
                      ||||.+++   +++|.++|++||+++|+||+|...... .     .    +...+.++++.|+||.+ +++|  +||+++
T Consensus       142 nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~-~-----~----~~~~~~di~~~s~~K~~~~~~g--~G~~~~  206 (366)
T 1m32_A          142 TTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFGGIP-M-----D----IAALHIDYLISSANKCIQGVPG--FAFVIA  206 (366)
T ss_dssp             TTTTEECC---HHHHHHHHHHHTCEEEEECTTTTTTSC-C-----C----TTTTTCSEEEEESSSTTCCCSS--EEEEEE
T ss_pred             CCcceecC---HHHHHHHHHHcCCEEEEECCccccCcC-c-----c----ccccCccEEEecCcccccCCCc--eEEEEE
Confidence            99999977   778999999999999999998743321 1     1    11223578999999976 5444  799976


Q ss_pred             EeCChhHHHHHHHH-----------HHhh-c--cccccCCchHHHHHHHHHhCChhhHHHHHHH--HHHHHHHHHHHHHH
Q 012647          319 VCSSSDLAARVKSQ-----------LKRL-A--RPMYSNPPVHGARIVANVVGNPALFDEWKAE--MEMMAGRIKNVRQK  382 (459)
Q Consensus       319 v~~~~~~~~~~~~~-----------~~~~-~--~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~  382 (459)
                         +++..+.+...           .... .  .....+++..++.++...|+.      +.+.  +++.++++++++++
T Consensus       207 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~------~~~~g~~~~~~~~~~~~~~~  277 (366)
T 1m32_A          207 ---REQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKE------LAKEGGVAARHQRYQQNQRS  277 (366)
T ss_dssp             ---EHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH------HHHHTHHHHHHHHHHHHHHH
T ss_pred             ---CHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHH------HHHccCHhHHHHHHHHHHHH
Confidence               66643332210           0000 0  000124455555444444321      1222  56788999999999


Q ss_pred             HHHHHhhccCCCCCcccccC---CcceeeecC------CCH-HHHHHHHhcccEEEcCCC-------cEEEccC-ChhhH
Q 012647          383 LFDSLSAKDKSGKDWSFILR---QIGMFSFTG------LNK-AQSDNMTNKWHVYMTKDG-------RISLAGL-SLAKC  444 (459)
Q Consensus       383 l~~~L~~~~g~~~~~~~~~~---~~g~f~~~~------l~~-~~~~~ll~~~gI~v~~gg-------Ris~~~~-~~e~i  444 (459)
                      +.+.|+ ++|    +++..+   .+++++|+.      .+. ++.+.|.+ +||.+.+|.       ||+++.. +++++
T Consensus       278 l~~~L~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~~~~~iRi~~~~~~~~~~i  351 (366)
T 1m32_A          278 LVAGMR-ALG----FNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKE-QGFVIYPGKVSQSDCFRIGNIGEVYAADI  351 (366)
T ss_dssp             HHHHHH-HTT----CCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHH-TTEECEECCCSSSCEEEEECCSSCCHHHH
T ss_pred             HHHHHH-HCC----CeeccCchhcCceEEEEEcCccCCCCHHHHHHHHHH-CCEEEECCcCCCCCEEEEecCCCCCHHHH
Confidence            999999 776    454443   356566653      234 44556665 599998862       9998865 78999


Q ss_pred             HHHHHHHHHHHhhc
Q 012647          445 EYLADAIIDSYHNV  458 (459)
Q Consensus       445 ~~~~~~l~~~~~~~  458 (459)
                      ++++++|+++++++
T Consensus       352 ~~~~~~l~~~~~~~  365 (366)
T 1m32_A          352 TALLTAIRTAMYWT  365 (366)
T ss_dssp             HHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998765

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.97  E-value=3.7e-28  Score=246.08  Aligned_cols=335  Identities=12%  Similarity=0.081  Sum_probs=223.0

Q ss_pred             CCCceeecccc-cCCCCCCc---cCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeec
Q 012647           82 DEKKLNLGVGA-YRTEELQP---YVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (459)
Q Consensus        82 ~~~~i~l~~g~-~~~~~~~~---~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (459)
                      +.++++|+.|. |+|.....   .+++.+.+++.    .+ ...|.+..+..+||+++++++..        +++++  |
T Consensus        32 g~~~~~l~~~~~ylD~~~~~~~~~~~~~~~~a~~----~~-~~~y~~~~~~~~l~~~la~~~~~--------~~~~~--~   96 (456)
T 2ez2_A           32 GYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMM----MG-DEAYAGSENFYHLERTVQELFGF--------KHIVP--T   96 (456)
T ss_dssp             TTCGGGSCGGGCSEECSCSSSCCCCCHHHHHHHT----TC-CCCSSSCHHHHHHHHHHHHHHCC--------SEEEE--E
T ss_pred             CCCcccCCcccceeeeccccCCccCCHHHHHHhh----cc-hhhcccChhHHHHHHHHHHHhCC--------CcEEE--e
Confidence            45778888886 34432221   23566666654    22 25688888999999999999743        46888  9


Q ss_pred             ccchhHHHHHHHHHHHhCCCCEEEEcCCCC-cchHHHhhhCCCCeeeeeeecC----C----CCCCCHHHHHHHHHcCC-
Q 012647          158 LSGTGSLRLAAALIERYFPGAKVLISSPTW-GNHKNIFNDARVPWSEYRYYDP----K----TVGLDFEGMIADIKAAP-  227 (459)
Q Consensus       158 ~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y-~~~~~~~~~~G~~v~~v~~~~~----~----~~~~d~e~l~~~i~~~~-  227 (459)
                      +||+++++++.+.  .+.+||  +++.|+| ..+...++..|++++.++++++    .    ++.+|+++|++++++.. 
T Consensus        97 ~~gt~a~~~al~~--l~~~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~  172 (456)
T 2ez2_A           97 HQGRGAENLLSQL--AIKPGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGA  172 (456)
T ss_dssp             SSHHHHHHHHHHH--HCCTTC--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG
T ss_pred             CCcHHHHHHHHHH--hCCCCC--EeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccc
Confidence            9999999998433  367999  8889999 7778889999999999998521    1    36889999999998621 


Q ss_pred             CCcEEEEeCCCCC-CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCC----------CCCCCCCCChhHHHHHHhcCCeE
Q 012647          228 GGSFILLHGCAHN-PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG----------FASGSLDNDASSVRLFATRGMEL  296 (459)
Q Consensus       228 ~~~~~ii~~~p~N-PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~----------~~~~~~~~~~~~~~~~~~~~~~~  296 (459)
                      ...+++++++|+| |||.+++.+++++|+++|++||+++|+||+|..          +.+.+  .....+........++
T Consensus       173 ~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g--~~~~~~~~~~~~~~d~  250 (456)
T 2ez2_A          173 ENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFEN--KSIAEIVHEMFSYADG  250 (456)
T ss_dssp             GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTT--SCHHHHHHHHHTTCSE
T ss_pred             cceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCC--cchhhhhhhhcccCCE
Confidence            1237888899999 999999999999999999999999999999875          33432  1111111011223445


Q ss_pred             EEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhcc-ccccCCchHHHHH-HHHHhCChhhHHHHHHHH-HHHH
Q 012647          297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLAR-PMYSNPPVHGARI-VANVVGNPALFDEWKAEM-EMMA  373 (459)
Q Consensus       297 i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~L~~~~~~~~~~~~~-~~~~  373 (459)
                      +++ |++|.++ +| |.||+  ++.++++++.+......... ..+.+.+.....+ +...+          +.+ +...
T Consensus       251 ~~~-S~kk~~~-~~-~gG~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~----------~~~~~~~~  315 (456)
T 2ez2_A          251 CTM-SGKKDCL-VN-IGGFL--CMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLR----------EAMQYEYI  315 (456)
T ss_dssp             EEE-ETTTTTC-CS-SCEEE--EESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHH----------HHTCHHHH
T ss_pred             EEE-eCcccCC-CC-ceeEE--EECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHH----------HHhHHHHH
Confidence            544 7888766 67 78998  34467755554432221110 0111222222222 22221          111 2334


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC-------C-HHH-----HHHHHhcccEEEcC-C--------
Q 012647          374 GRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-------N-KAQ-----SDNMTNKWHVYMTK-D--------  431 (459)
Q Consensus       374 ~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-------~-~~~-----~~~ll~~~gI~v~~-g--------  431 (459)
                      ++.+++.+++.+.|+ +.|    +++..+.+++++|+.+       + .++     ..+|++++||.+.+ |        
T Consensus       316 ~~~~~~~~~l~~~L~-~~g----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~  390 (456)
T 2ez2_A          316 EHRVKQVRYLGDKLK-AAG----VPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNN  390 (456)
T ss_dssp             HHHHHHHHHHHHHHH-HTT----CCBCSSCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCT
T ss_pred             HHHHHHHHHHHHHHh-cCC----CccccCCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCc
Confidence            444556677888888 665    4666777888887542       2 233     55565667997533 1        


Q ss_pred             ----------C--cEEEcc--CChhhHHHHHHHHHHHHhh
Q 012647          432 ----------G--RISLAG--LSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       432 ----------g--Ris~~~--~~~e~i~~~~~~l~~~~~~  457 (459)
                                +  ||+++.  .+++++++++++|++++++
T Consensus       391 ~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~  430 (456)
T 2ez2_A          391 VTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQH  430 (456)
T ss_dssp             TTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             cccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence                      3  899874  4899999999999998875

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.97  E-value=1.5e-28  Score=245.56  Aligned_cols=323  Identities=12%  Similarity=-0.001  Sum_probs=221.5

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCC----CCCCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKE----YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~----Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (459)
                      +...+||+...|+   +.+. +|.+.+++.+.+...  ....    |+......++++++++++..       +..++  
T Consensus        58 g~~~ld~~s~~~l---~~~~-~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~-------~~~i~--  124 (409)
T 3kki_A           58 SPDDIILQSNDYL---ALAN-HPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGF-------DECLL--  124 (409)
T ss_dssp             CTTSEECCCSCTT---CCTT-CHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTC-------SEEEE--
T ss_pred             CCceEEeeccCcc---CCcC-CHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCC-------CeEEE--
Confidence            4578999887663   3333 788999998888641  1112    22234467899999998643       23344  


Q ss_pred             ecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEe
Q 012647          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (459)
Q Consensus       156 ~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~  235 (459)
                       +.+|++++..+  +...+.+||.|+++.|+|..+...++..|++++.++.       .|++++++.+++.  +++++++
T Consensus       125 -~~sGt~a~~~~--l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~--~~~~vi~  192 (409)
T 3kki_A          125 -SQSGWNANVGL--LQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMH-------NNCDHLRMLIQRH--GPGIIVV  192 (409)
T ss_dssp             -ESCHHHHHHHH--HHHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECT-------TCHHHHHHHHHHH--CSCEEEE
T ss_pred             -ecchHHHHHHH--HHHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecC-------CCHHHHHHHHHhc--CCeEEEE
Confidence             46667998887  4444779999999999999999999999999887754       5899999999862  4678888


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEEcCCcCcccCCCCcc
Q 012647          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIG  314 (459)
Q Consensus       236 ~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG  314 (459)
                      ++|+||||.+++   +++|+++|++||+++|+||+|....++.   .........+. .+.++++.||||.++++|   |
T Consensus       193 ~~~~nptG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~---~g~~~~~~~~~~~~~di~~~s~sK~~~~~g---g  263 (409)
T 3kki_A          193 DSIYSTLGTIAP---LAELVNISKEFGCALLVDESHSLGTHGP---NGAGLLAELGLTREVHFMTASLAKTFAYRA---G  263 (409)
T ss_dssp             ESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSG---GGCCHHHHHTCGGGCSEEEEESSSTTCSSC---E
T ss_pred             CCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCC---CCCcchhhcCCCCCCCEEEeecchhhCCCc---e
Confidence            999999999977   8889999999999999999998744431   11111121221 234688999999999664   8


Q ss_pred             eEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 012647          315 AMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG  394 (459)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  394 (459)
                      |+++   +++.++.+.........  ....+..++.++...++   ..    ++.++.+++++++++++.+.|+ ++|  
T Consensus       264 ~v~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~aa~~aal~---~~----~~~~~~~~~~~~~~~~l~~~L~-~~g--  328 (409)
T 3kki_A          264 AIWC---NNEVNRCVPFISYPAIF--SSTLLPYEAAGLETTLE---II----ESADNRRQHLDRMARKLRIGLS-QLG--  328 (409)
T ss_dssp             EEEE---SSSGGGTHHHHCHHHHH--SBCCCHHHHHHHHHHHH---HH----HHCHHHHHHHHHHHHHHHHHHH-TTT--
T ss_pred             EEEE---CHHHHHHHHHhCcCccc--cCCCcHHHHHHHHHHHH---HH----hcCHHHHHHHHHHHHHHHHHHH-HcC--
Confidence            8865   66755544432111111  11233333333333332   11    1225778899999999999999 886  


Q ss_pred             CCcccccCCcceeeecCC-----CHHHHHHHHhcccEEEcC-------CC----cEEEcc-CChhhHHHHHHHHHHHHhh
Q 012647          395 KDWSFILRQIGMFSFTGL-----NKAQSDNMTNKWHVYMTK-------DG----RISLAG-LSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       395 ~~~~~~~~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~-------gg----Ris~~~-~~~e~i~~~~~~l~~~~~~  457 (459)
                        +.+. + .+.++|+.+     ..++.+.|+++ ||.+.+       .|    ||+++. .+++++++++++|+++++.
T Consensus       329 --~~~~-~-~~~~~~~~~~~~~~~~~~~~~L~~~-Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~  403 (409)
T 3kki_A          329 --LTIR-S-ESQIIGLETGDERNTEKVRDYLESN-GVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY  403 (409)
T ss_dssp             --CCCC-C-SSSEEEEEEESHHHHHHHHHHHHHT-TEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             --CccC-C-CCCEEEEEeCCHHHHHHHHHHHHHC-CceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence              4544 3 455666543     22456677775 999853       22    999874 3889999999999999875


Q ss_pred             c
Q 012647          458 V  458 (459)
Q Consensus       458 ~  458 (459)
                      .
T Consensus       404 ~  404 (409)
T 3kki_A          404 G  404 (409)
T ss_dssp             S
T ss_pred             C
Confidence            3

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.97  E-value=4.9e-29  Score=245.80  Aligned_cols=319  Identities=12%  Similarity=0.032  Sum_probs=215.5

Q ss_pred             CCCCCCccCcHHHHHHHHHHhhcCCC---CCCC----CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHH
Q 012647           94 RTEELQPYVLDVVKKAENLMLERGEN---KEYL----PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRL  166 (459)
Q Consensus        94 ~~~~~~~~~~~~v~~a~~~~~~~~~~---~~Y~----~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l  166 (459)
                      +|..+..++++.+.+++.+.+.....   ..|.    ......++++.+++++..      ++++|++  |+|+++++++
T Consensus         4 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~------~~~~i~~--~~g~~~a~~~   75 (382)
T 4hvk_A            4 FDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNG------GGGTVVF--TSGATEANNL   75 (382)
T ss_dssp             CBTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTC------TTEEEEE--ESSHHHHHHH
T ss_pred             ecCCCcCCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCC------CcCeEEE--ECCchHHHHH
Confidence            34444445589999999988854211   0111    122345788888888643      2678999  9999999999


Q ss_pred             HHHHHHHh----CCCCEEEEcCCCCcchHHHhhh---CCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCC
Q 012647          167 AAALIERY----FPGAKVLISSPTWGNHKNIFND---ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (459)
Q Consensus       167 ~~~~~~~~----~~gd~Vlv~~p~y~~~~~~~~~---~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~  239 (459)
                      +...+  .    .+||+|++++|+|+.+...+..   .|++++.+|++  +++.+|++++++++++   +++++++++||
T Consensus        76 ~~~~~--~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~---~~~~v~~~~~~  148 (382)
T 4hvk_A           76 AIIGY--AMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVG--KYGEVDVSFIDQKLRD---DTILVSVQHAN  148 (382)
T ss_dssp             HHHHH--HHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBC--TTSCBCHHHHHHHCCT---TEEEEECCSBC
T ss_pred             HHHHh--hhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccC--CCCCcCHHHHHHHhcc---CceEEEEECCC
Confidence            84433  4    7999999999999988765554   69999999984  4678999999999975   78899999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEE
Q 012647          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (459)
Q Consensus       240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (459)
                      ||||.+.+   +++|.++|++||+ +|+|++|.. +...  .   ..    ...+.++++.|+||.+|++|  +|++++ 
T Consensus       149 nptG~~~~---~~~i~~l~~~~~~-li~D~a~~~-~~~~--~---~~----~~~~~d~~~~s~~K~~g~~g--~g~~~~-  211 (382)
T 4hvk_A          149 NEIGTIQP---VEEISEVLAGKAA-LHIDATASV-GQIE--V---DV----EKIGADMLTISSNDIYGPKG--VGALWI-  211 (382)
T ss_dssp             TTTCBBCC---HHHHHHHHSSSSE-EEEECTTTB-TTBC--C---CH----HHHTCSEEEEESGGGTSCTT--CEEEEE-
T ss_pred             CCceeeCC---HHHHHHHHHHcCE-EEEEhHHhc-CCCC--C---Cc----hhcCCCEEEEeHHHhcCCCc--eEEEEE-
Confidence            99999965   6689999999999 999999653 2211  1   11    11235689999999988777  788754 


Q ss_pred             eCChhHHHHHHHHHHh---hccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 012647          320 CSSSDLAARVKSQLKR---LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKD  396 (459)
Q Consensus       320 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~  396 (459)
                        +++.  .+...+..   ........++..++.++...+.   +   +.+.+++.+++++++++++.+.|+ +++   +
T Consensus       212 --~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~---~---~~~~~~~~~~~~~~~~~~l~~~L~-~~~---~  277 (382)
T 4hvk_A          212 --RKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAE---I---TAMEWREEAERLRRLRDRIIDNVL-KIE---E  277 (382)
T ss_dssp             --ETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHT-TST---T
T ss_pred             --cCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHH---H---HHhhHHHHHHHHHHHHHHHHHHHh-cCC---C
Confidence              2221  01110000   0001122334444444433332   1   134568889999999999999999 763   1


Q ss_pred             cccccCCc----ceeee--cCCCHHHHHHHHhcccEEEcCC-------------------------C--cEEEccC-Chh
Q 012647          397 WSFILRQI----GMFSF--TGLNKAQSDNMTNKWHVYMTKD-------------------------G--RISLAGL-SLA  442 (459)
Q Consensus       397 ~~~~~~~~----g~f~~--~~l~~~~~~~ll~~~gI~v~~g-------------------------g--Ris~~~~-~~e  442 (459)
                      +.+..+.+    +++.+  .+.+.+.+...++++||.+.+|                         +  ||+++.. +++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e  357 (382)
T 4hvk_A          278 SYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDE  357 (382)
T ss_dssp             EEECSCSSSBCTTEEEEEETTCCHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHH
T ss_pred             eEEeCCccccCCCEEEEEECCCCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHH
Confidence            45554443    22222  2455555444445569999875                         3  9998854 789


Q ss_pred             hHHHHHHHHHHHHhhc
Q 012647          443 KCEYLADAIIDSYHNV  458 (459)
Q Consensus       443 ~i~~~~~~l~~~~~~~  458 (459)
                      ++++++++|+++++++
T Consensus       358 ~i~~~~~~l~~~~~~~  373 (382)
T 4hvk_A          358 DVDRLLEVLPGVIERL  373 (382)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998764

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.97  E-value=3.9e-29  Score=248.41  Aligned_cols=334  Identities=13%  Similarity=0.075  Sum_probs=223.3

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC--CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      ...+||+.|.+.+..++  .++.+.+++.+.+....  ...| +.....++++.+++++..      .+++|++  |+||
T Consensus        45 ~~~ld~~~~~~~~~~g~--~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~------~~~~v~~--~~gg  113 (395)
T 1vef_A           45 NEYIDCVGGYGVANLGH--GNPEVVEAVKRQAETLMAMPQTL-PTPMRGEFYRTLTAILPP------ELNRVFP--VNSG  113 (395)
T ss_dssp             CEEEESSHHHHTCTTCB--TCHHHHHHHHHHHHHCCCCCTTS-CCHHHHHHHHHHHHTSCT------TEEEEEE--ESSH
T ss_pred             CEEEEccCccccccCCC--CCHHHHHHHHHHHHhCCCCcccc-CCHHHHHHHHHHHHhcCC------CcCEEEE--cCcH
Confidence            46789998875333233  37899999998885421  1124 555677888888887431      2678999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcc-hHHHhhhCCCCeee---eeeecCC--CCCCCHHHHHHHHHcCCCCcEEEE
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGN-HKNIFNDARVPWSE---YRYYDPK--TVGLDFEGMIADIKAAPGGSFILL  234 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~-~~~~~~~~G~~v~~---v~~~~~~--~~~~d~e~l~~~i~~~~~~~~~ii  234 (459)
                      +++++++.+.+..+.+||+|++++|+|.. +...+...|.+++.   +|+..+.  -...|++++++++++   ++++++
T Consensus       114 ~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~---~~~~v~  190 (395)
T 1vef_A          114 TEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDE---ETAAVI  190 (395)
T ss_dssp             HHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCT---TEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhcc---CEEEEE
Confidence            99999985543223588999999999965 45566667775321   1221000  001489999999875   678888


Q ss_pred             eCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc
Q 012647          235 HGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI  313 (459)
Q Consensus       235 ~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri  313 (459)
                      +++++||||.+ .+.+++++|+++|++||+++|+||+|.+++..+.   ...+.. .....+++   ||||.++. |+|+
T Consensus       191 ~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~---~~~~~~-~~~~~d~~---s~sK~~~~-g~~~  262 (395)
T 1vef_A          191 LEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK---RFAFEH-FGIVPDIL---TLAKALGG-GVPL  262 (395)
T ss_dssp             ECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHH-HTCCCSEE---EECGGGGT-TSSC
T ss_pred             EeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCc---hhHhhh-cCCCCCEE---EEcccccC-CCce
Confidence            77778999976 4788899999999999999999999997754321   111211 22233433   88999995 9999


Q ss_pred             ceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012647          314 GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  393 (459)
Q Consensus       314 G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  393 (459)
                      ||+++   +++.    .+.+.........+++.+++.++...|+..      .+  +...++++++++++.+.|+ +++.
T Consensus       263 G~~~~---~~~~----~~~l~~~~~~~~~~~~~~~~~a~~~al~~~------~~--~~~~~~~~~~~~~l~~~l~-~~~~  326 (395)
T 1vef_A          263 GVAVM---REEV----ARSMPKGGHGTTFGGNPLAMAAGVAAIRYL------ER--TRLWERAAELGPWFMEKLR-AIPS  326 (395)
T ss_dssp             EEEEE---EHHH----HHTSCTTSSCCSSTTCHHHHHHHHHHHHHH------HH--HTTHHHHHHHHHHHHHHHH-TSCC
T ss_pred             EEEEe---hHHH----HhhhccCCcCCCcCCCHHHHHHHHHHHHHH------Hh--CCHHHHHHHHHHHHHHHHH-Hhhc
Confidence            99976   6663    333322112223355666666665554321      11  3467788889999999998 8753


Q ss_pred             CCCcccccCCcceeeecCC---CHHHHHHHHhcccEEEcCCC----cEEEcc-CChhhHHHHHHHHHHHHh
Q 012647          394 GKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKDG----RISLAG-LSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       394 ~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~gg----Ris~~~-~~~e~i~~~~~~l~~~~~  456 (459)
                      +. +... +..|+|+|+.+   ..++.+.|++++||.+.+++    ||+++. .+++++++++++|+++++
T Consensus       327 ~~-~~~~-~~~g~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~  395 (395)
T 1vef_A          327 PK-IREV-RGMGLMVGLELKEKAAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVLA  395 (395)
T ss_dssp             TT-EEEE-EEETTEEEEEESSCSHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             Cc-eEEE-EEEEEEEEEEEcChHHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHhC
Confidence            11 1112 23455666544   45667788735699999875    887653 389999999999998763

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.97  E-value=4.9e-29  Score=250.64  Aligned_cols=346  Identities=12%  Similarity=0.006  Sum_probs=208.0

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...+|++.|.+.+..+..  +|.+.+++.+.++..  ..|.+..+..+.++++++++....+  ..+++|++  |+||+
T Consensus        28 g~~~lD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~--~~gg~   99 (430)
T 3i4j_A           28 GRRYLDGSSGALVANIGHG--RAEVGERMAAQAARL--PFVHGSQFSSDVLEEYAGRLARFVG--LPTFRFWA--VSGGS   99 (430)
T ss_dssp             SCEEEETTHHHHTCTTCBC--CHHHHHHHHHHHHHC--CCCCTTTCEEHHHHHHHHHHHHHTT--CTTCEEEE--ESSHH
T ss_pred             CCEEEECCCchhccccCCC--CHHHHHHHHHHHHhc--ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCcHH
Confidence            3468899998664444543  789999998887652  2233333444555555555444333  23678999  99999


Q ss_pred             hHHHHHHHHHHHh------CCCCEEEEcCCCCcchHHHhhhCCC---------------CeeeeeeecCCC---CCCCHH
Q 012647          162 GSLRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDARV---------------PWSEYRYYDPKT---VGLDFE  217 (459)
Q Consensus       162 ~a~~l~~~~~~~~------~~gd~Vlv~~p~y~~~~~~~~~~G~---------------~v~~v~~~~~~~---~~~d~e  217 (459)
                      ++++.+.+++...      .++++|++.+|+|..+.......+.               .+..+|..  +.   +..|++
T Consensus       100 ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  177 (430)
T 3i4j_A          100 EATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKP--DPARNGAEDAE  177 (430)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCC--CTTSCHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCC--cccchhhHHHH
Confidence            9999986655433      4578999999999987765544433               33344431  11   223668


Q ss_pred             HHHHHHHcCC-CCcEEEEeCCCCC-CCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH-hcC
Q 012647          218 GMIADIKAAP-GGSFILLHGCAHN-PTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRG  293 (459)
Q Consensus       218 ~l~~~i~~~~-~~~~~ii~~~p~N-PTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~-~~~  293 (459)
                      .|++.++... +.+++++++.+|| ++|. +++++.+++|.++|++||+++|+||+|.+++..+.   ...... . +..
T Consensus       178 ~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~---~~~~~~-~~~~~  253 (430)
T 3i4j_A          178 GLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGS---PLALSR-WSGVT  253 (430)
T ss_dssp             HHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGG-TTTCC
T ss_pred             HHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc---hhhhhh-hcCCC
Confidence            8998887421 2556666666677 8886 67888899999999999999999999998875431   112211 1 222


Q ss_pred             CeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHH
Q 012647          294 MELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMM  372 (459)
Q Consensus       294 ~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~  372 (459)
                      ++++   +|||.++ .| +|+||+++   +++.++.+...........+.+.+.++|.++...|+...-    .+.+++.
T Consensus       254 ~di~---t~sK~l~-~G~~r~G~~~~---~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~  322 (430)
T 3i4j_A          254 PDIA---VLGKGLA-AGYAPLAGLLA---APQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVER----EDLTGAA  322 (430)
T ss_dssp             CSEE---EECGGGT-TTSSCCEEEEE---CHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHH----TTHHHHH
T ss_pred             CcEE---EEccccc-CCccccEEEEE---CHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHc----ccHHHHH
Confidence            3333   7899999 59 99999976   8884443332100012223336677787777666642110    1112344


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC-C-------------HHHHHHHHhcccEEEcCC-------
Q 012647          373 AGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-N-------------KAQSDNMTNKWHVYMTKD-------  431 (459)
Q Consensus       373 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-~-------------~~~~~~ll~~~gI~v~~g-------  431 (459)
                      ++..+..++.|.+.+. +++.   +..+.+.|. |+++.+ +             .++.+.+++ +||.+.|+       
T Consensus       323 ~~~~~~~~~~l~~~~~-~~~~---~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~~~  396 (430)
T 3i4j_A          323 KERGAQLLAGLQALQA-RFPQ---MMQVRGTGL-LLGVVLGDLATGQAFETPGIASRIGAAALK-RGLITYPGSGAEPNG  396 (430)
T ss_dssp             HHHHHHHHHHHHHHHH-HCTT---EEEEEEETT-EEEEEEC------------CHHHHHHHHHH-TTEECC---------
T ss_pred             HHHHHHHHHHHHHHHH-hCCC---eEEEEEEEE-EEEEEeccccccCCCccHHHHHHHHHHHHh-CCCEEEecccccCCC
Confidence            4444444444444443 4321   344555554 444322 1             245666765 59999987       


Q ss_pred             -C---cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          432 -G---RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       432 -g---Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                       +   ||+++. .+++++++++++|+++++++
T Consensus       397 ~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  428 (430)
T 3i4j_A          397 RGDHLLLGPPLSITAAEVDGLLALLAGALEDV  428 (430)
T ss_dssp             --CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence             2   888762 38999999999999998864

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.97  E-value=4.7e-29  Score=248.11  Aligned_cols=325  Identities=11%  Similarity=0.086  Sum_probs=220.0

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCC--CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...+||+.|.+-+..++  .+|.+.+++.+.++....  ..| +.....++++.+++++    |    ++++++  |+|
T Consensus        39 g~~~ld~~~~~~~~~lg~--~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~----g----~~~v~~--~~g  105 (397)
T 2ord_A           39 GNAYLDFTSGIAVNVLGH--SHPRLVEAIKDQAEKLIHCSNLF-WNRPQMELAELLSKNT----F----GGKVFF--ANT  105 (397)
T ss_dssp             CCEEEESSHHHHTCTTCB--TCHHHHHHHHHHHHHCSCCCTTS-EEHHHHHHHHHHHHTT----T----SCEEEE--ESS
T ss_pred             CCEEEECCccccccccCC--CCHHHHHHHHHHHHhcccCcccc-CCHHHHHHHHHHHHhc----C----CCeEEE--eCC
Confidence            346789988843222233  378899999888754211  113 3344566777777764    2    478988  999


Q ss_pred             chhHHHHHHHHHHHhC----C-CCEEEEcCCCCcc-hHHHhhhCCCC------------eeeeeeecCCCCCCCHHHHHH
Q 012647          160 GTGSLRLAAALIERYF----P-GAKVLISSPTWGN-HKNIFNDARVP------------WSEYRYYDPKTVGLDFEGMIA  221 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~----~-gd~Vlv~~p~y~~-~~~~~~~~G~~------------v~~v~~~~~~~~~~d~e~l~~  221 (459)
                      |++++.++.+.+....    + +++|++++|+|.. +...++..|.+            ++.+|.       .|++.+++
T Consensus       106 g~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~l~~  178 (397)
T 2ord_A          106 GTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF-------NNVEDLRR  178 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-------TCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-------CCHHHHHH
Confidence            9999999855442221    4 4789999999965 44466777765            555543       28999999


Q ss_pred             HHHcCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEE
Q 012647          222 DIKAAPGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (459)
Q Consensus       222 ~i~~~~~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  300 (459)
                      ++++   +++++++++||||||. +++.+++++|+++|++||+++|+||+|.++++.+   ....+..+ +...+++   
T Consensus       179 ~l~~---~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g---~~~~~~~~-~~~~d~~---  248 (397)
T 2ord_A          179 KMSE---DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTG---KLFAYQKY-GVVPDVL---  248 (397)
T ss_dssp             HCCT---TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSHHHHH-TCCCSEE---
T ss_pred             Hhhc---CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCc---cchhhhhh-CCCCCee---
Confidence            8875   7889999999999999 9999999999999999999999999998876542   12222222 2223433   


Q ss_pred             cCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012647          301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR  380 (459)
Q Consensus       301 S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~  380 (459)
                      ||||.++ +|+|+||+++   +++.    . .+.........+.+.+++.++...|+..      .+  ++.++++++++
T Consensus       249 s~sK~~~-~G~r~G~~~~---~~~~----~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~--~~~~~~~~~~~  311 (397)
T 2ord_A          249 TTAKGLG-GGVPIGAVIV---NERA----N-VLEPGDHGTTFGGNPLACRAGVTVIKEL------TK--EGFLEEVEEKG  311 (397)
T ss_dssp             EECGGGG-TTSCCEEEEE---CSTT----C-CCCTTSSCCSSTTCHHHHHHHHHHHHHH------TS--TTHHHHHHHHH
T ss_pred             eeccccC-CCcCeEEEEE---chHh----c-ccCCCCcCCCCCCCHHHHHHHHHHHHHH------Hh--CCHHHHHHHHH
Confidence            8899999 8999999965   5552    2 2222122223356677777666555321      11  35677888888


Q ss_pred             HHHHHHHhhcc--CCCCCcccccCCcceeeecCC----CH-HHHHHHHhcccEEEcCCC----cEEEc-cCChhhHHHHH
Q 012647          381 QKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLA  448 (459)
Q Consensus       381 ~~l~~~L~~~~--g~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~gg----Ris~~-~~~~e~i~~~~  448 (459)
                      +++.+.|+ ++  +++. +....+.+ .|+|+.+    +. ++.+.|++ +||.+.+++    ||+++ ..+++++++++
T Consensus       312 ~~l~~~L~-~~~~~~~~-~~~~~~~g-~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~~iRis~~~~~~~e~i~~~~  387 (397)
T 2ord_A          312 NYLMKKLQ-EMKEEYDV-VADVRGMG-LMIGIQFREEVSNREVATKCFE-NKLLVVPAGNNTIRFLPPLTVEYGEIDLAV  387 (397)
T ss_dssp             HHHHHHHH-HHHHHCTT-EEEEEEET-TEEEEEECTTSCHHHHHHHHHH-TTEECEEETTTEEEECCCTTCCHHHHHHHH
T ss_pred             HHHHHHHH-HHHHhCCc-eEEEEEEe-EEEEEEECChHHHHHHHHHHHH-CCCEEccCCCCEEEEECCcCCCHHHHHHHH
Confidence            88888888 65  2221 11223444 4545432    23 45666666 699999875    88854 23899999999


Q ss_pred             HHHHHHHhh
Q 012647          449 DAIIDSYHN  457 (459)
Q Consensus       449 ~~l~~~~~~  457 (459)
                      ++|++++++
T Consensus       388 ~~l~~~l~~  396 (397)
T 2ord_A          388 ETLKKVLQG  396 (397)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            999998875

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.96  E-value=5.9e-29  Score=247.92  Aligned_cols=323  Identities=14%  Similarity=0.035  Sum_probs=220.8

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCC---CCCCC----CCcccHHHHHHHHHHHhcCCCCccccCceEEee
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE---NKEYL----PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~---~~~Y~----~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (459)
                      +.+.|..+.+    .  +.++.+.+++.+.+....   ...|.    +..+..++|+++++++..      ++++|++  
T Consensus        26 ~~~~ld~~~~----~--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~------~~~~v~~--   91 (406)
T 3cai_A           26 GWVHFDAPAG----M--LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNA------DPGGVVL--   91 (406)
T ss_dssp             SCEECBGGGC----C--CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTC------CGGGEEE--
T ss_pred             CeEEEeCCCc----C--CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCC------CCCeEEE--
Confidence            4677777765    2  348899999988875421   11232    245678999999999743      2678999  


Q ss_pred             cccchhHHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHhhh----CCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcE
Q 012647          157 GLSGTGSLRLAAALIE-RYFPGAKVLISSPTWGNHKNIFND----ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (459)
Q Consensus       157 t~ggt~a~~l~~~~~~-~~~~gd~Vlv~~p~y~~~~~~~~~----~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~  231 (459)
                      |+|++++++++...+. .+.+||+|+++.|+|..+...+..    .|++++.+|++ ++++.+|++++++++++   +++
T Consensus        92 ~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~-~~~~~~d~~~l~~~l~~---~~~  167 (406)
T 3cai_A           92 GADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVD-IETGELPTWQWESLISK---STR  167 (406)
T ss_dssp             ESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCC-TTTCCCCGGGHHHHCCT---TEE
T ss_pred             eCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecC-cccCCcCHHHHHHHhCC---Cce
Confidence            9999999999743221 157999999999999876555443    69999999985 24677999999999975   788


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCC
Q 012647          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE  311 (459)
Q Consensus       232 ~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~  311 (459)
                      ++++++|+||||.+++   +++|.++|+++|+++|+|++|.... ..  .+   +..    .+.++++.|+||.+| ++ 
T Consensus       168 ~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~-~~--~~---~~~----~~~d~~~~s~~K~~g-~~-  232 (406)
T 3cai_A          168 LVAVNSASGTLGGVTD---LRAMTKLVHDVGALVVVDHSAAAPY-RL--LD---IRE----TDADVVTVNAHAWGG-PP-  232 (406)
T ss_dssp             EEEEESBCTTTCBBCC---CHHHHHHHHHTTCEEEEECTTTTTT-CC--CC---HHH----HCCSEEEEEGGGGTS-CS-
T ss_pred             EEEEeCCcCCccccCC---HHHHHHHHHHcCCEEEEEcccccCC-CC--CC---chh----cCCCEEEeehhhhcC-CC-
Confidence            9999999999999976   6789999999999999999976322 11  11   111    135788999999887 54 


Q ss_pred             Ccc-eEEEEeCChhHHHHHHHHHHhhcc---------ccccCCchHHHHHHHHHh---CChh------hHHHHHHHHHHH
Q 012647          312 RIG-AMNVVCSSSDLAARVKSQLKRLAR---------PMYSNPPVHGARIVANVV---GNPA------LFDEWKAEMEMM  372 (459)
Q Consensus       312 RiG-~~~~v~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~L---~~~~------~~~~~~~~~~~~  372 (459)
                       +| |+++   +++    +.+.+.....         ....+++..++.++...+   .+.+      ...+|.+.++++
T Consensus       233 -~G~~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~  304 (406)
T 3cai_A          233 -IGAMVFR---DPS----VMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSA  304 (406)
T ss_dssp             -CEEEEES---CHH----HHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHH
T ss_pred             -cCeEEEE---ehH----HHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHH
Confidence             89 8755   666    3333322210         111233444333332222   2100      112234457888


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCcccccCC---cceeeec---CCCHHH-HHHHHhcccEEEcCC--------------
Q 012647          373 AGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ---IGMFSFT---GLNKAQ-SDNMTNKWHVYMTKD--------------  431 (459)
Q Consensus       373 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~---~g~f~~~---~l~~~~-~~~ll~~~gI~v~~g--------------  431 (459)
                      +++++++++++.+.|+ +++   ++++..+.   +++ +++   +.+.+. .+.|. ++||.+.+|              
T Consensus       305 ~~~~~~~~~~l~~~L~-~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~-~~gi~v~~g~~~~~~~~~g~~~~  378 (406)
T 3cai_A          305 DAYLNRVFDYLMVSLR-SLP---LVMLIGRPEAQIPV-VSFAVHKVPADRVVQRLA-DNGILAIANTGSRVLDVLGVNDV  378 (406)
T ss_dssp             HHHHHHHHHHHHHHHH-TCT---TEEECCCCSSBCSE-EEEEETTBCHHHHHHHHH-HTTEECEECCSCHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHHHh-cCC---CeEEcCCccccCCE-EEEEECCcCHHHHHHHHH-HCCcEEecCChHHHHHHcCCCCC
Confidence            9999999999999999 762   15555543   443 333   344544 45554 479998763              


Q ss_pred             -C--cEEEccC-ChhhHHHHHHHHHH
Q 012647          432 -G--RISLAGL-SLAKCEYLADAIID  453 (459)
Q Consensus       432 -g--Ris~~~~-~~e~i~~~~~~l~~  453 (459)
                       +  ||+++.. +++++++++++|++
T Consensus       379 ~~~iRis~~~~~t~e~i~~~~~~l~~  404 (406)
T 3cai_A          379 GGAVTVGLAHYSTMAEVDQLVRALAS  404 (406)
T ss_dssp             TCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred             CCeEEEEeecCCCHHHHHHHHHHHHH
Confidence             3  9998864 68999999999875

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.96  E-value=1.3e-28  Score=246.71  Aligned_cols=331  Identities=11%  Similarity=0.016  Sum_probs=216.6

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCC---CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN---KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~---~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      ...+|++.|.+..+-+++ .+|.|.+++.+.++....   ..| +.....++++.+++++    +... +++|++  |+|
T Consensus        42 ~~~lD~~~~~~~~~lG~~-~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~----~~~~-~~~v~~--~~g  112 (419)
T 2eo5_A           42 NKYLDFTSGIGVNNLGWP-SHPEVIKIGIEQMQKLAHAAANDF-YNIPQLELAKKLVTYS----PGNF-QKKVFF--SNS  112 (419)
T ss_dssp             CEEEESSGGGGTTTTCBS-CCHHHHHHHHHHHTTSCCCSCSCS-CCHHHHHHHHHHHHHS----SCSS-CEEEEE--ESS
T ss_pred             CEEEEccCChhhhccCCC-CCHHHHHHHHHHHhhCcccccccc-CCHHHHHHHHHHHHhC----CCCc-CCEEEE--eCc
Confidence            467899988852222322 168899999988864321   113 3333456666666664    3222 578999  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH-HhhhC-------------CCCeeeeeeecCC--CCC----------
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKN-IFNDA-------------RVPWSEYRYYDPK--TVG----------  213 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~-~~~~~-------------G~~v~~v~~~~~~--~~~----------  213 (459)
                      |+++++++.+++..+ +||+|++++|+|.++.. .....             +.+++.+|..+..  .++          
T Consensus       113 g~ea~~~ai~~~~~~-~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~  191 (419)
T 2eo5_A          113 GTEAIEASIKVVKNT-GRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSEL  191 (419)
T ss_dssp             HHHHHHHHHHHHHTT-SCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHH
T ss_pred             hHHHHHHHHHHHHHh-hCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhh
Confidence            999999986543222 48999999999975433 22111             2356777773211  112          


Q ss_pred             --CCHHHHH-HHHHcCC--CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHH
Q 012647          214 --LDFEGMI-ADIKAAP--GGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR  287 (459)
Q Consensus       214 --~d~e~l~-~~i~~~~--~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~  287 (459)
                        +|+++++ +++++..  +++++++++..|||||. +++++.+++|.++|++||+++|+||+|.+++..+.   ...+.
T Consensus       192 ~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~---~~~~~  268 (419)
T 2eo5_A          192 VNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK---LFAIE  268 (419)
T ss_dssp             HHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGG
T ss_pred             HHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcc---hhhHH
Confidence              4688999 8887421  24556664444567896 77899999999999999999999999998875421   11111


Q ss_pred             HHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHH
Q 012647          288 LFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWK  366 (459)
Q Consensus       288 ~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~  366 (459)
                       .....++++   ||||.|+ .| +|+||+++   +++.+ .+ ..   .... +.+.+.+++.++...|+.        
T Consensus       269 -~~~~~~d~~---t~sK~~~-~G~~riG~~~~---~~~~~-~~-~~---~~~~-t~~~n~~~~~aa~aal~~--------  326 (419)
T 2eo5_A          269 -NFNTVPDVI---TLAKALG-GGIMPIGATIF---RKDLD-FK-PG---MHSN-TFGGNALACAIGSKVIDI--------  326 (419)
T ss_dssp             -GGTCCCSEE---EECGGGG-TTTSCCEEEEE---EGGGC-CC-----------CCCCCHHHHHHHHHHHHH--------
T ss_pred             -hcCCCCCEE---Eeccccc-CCccceEEEEE---chHhh-cC-Cc---ccCC-CCCCCHHHHHHHHHHHHH--------
Confidence             122234433   8999999 59 99999976   66644 33 21   1122 335677777777666532        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC-C----HHHHHHHHhcccEEEcCCC----cEEEc
Q 012647          367 AEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-N----KAQSDNMTNKWHVYMTKDG----RISLA  437 (459)
Q Consensus       367 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-~----~~~~~~ll~~~gI~v~~gg----Ris~~  437 (459)
                        +++.+++++++++++.+.|+ ++     +..+.+. |.|+|+.+ .    .++.+.|++ +||.+.++|    ||+++
T Consensus       327 --~~~~~~~~~~~~~~l~~~L~-~~-----~~~~~~~-g~~~~i~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~lRis~~  396 (419)
T 2eo5_A          327 --VKDLLPHVNEIGKIFAEELQ-GL-----ADDVRGI-GLAWGLEYNEKKVRDRIIGESFK-RGLLLLPAGRSAIRVIPP  396 (419)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHT-TS-----SSEEEEE-TTEEEEECSCHHHHHHHHHHHHH-TTEECEEETTTEEEECCC
T ss_pred             --HHHHHHHHHHHHHHHHHHHH-Hh-----hhheEee-eEEEEEEEecCccHHHHHHHHHH-CCCEEecCCCCEEEEECC
Confidence              22377888999999999998 75     2334455 45556555 2    234556664 699999864    88765


Q ss_pred             c-CChhhHHHHHHHHHHHHhhc
Q 012647          438 G-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       438 ~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                      . .+++++++++++|+++++++
T Consensus       397 ~~~t~e~i~~~l~~l~~~l~~~  418 (419)
T 2eo5_A          397 LVISEEEAKQGLDILKKVIKVV  418 (419)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHHHhc
Confidence            2 28999999999999998765

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.96  E-value=5e-29  Score=246.95  Aligned_cols=312  Identities=11%  Similarity=0.090  Sum_probs=214.8

Q ss_pred             CcHHHHHHHHHHhhcCCCCCCCC--CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCE
Q 012647          102 VLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK  179 (459)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~  179 (459)
                      +++.+.+++.+...    ..|.+  .....++++.+++++....     +++|++  |+||++++.++.  ...+.+||+
T Consensus        34 ~~~~v~~a~~~~~~----~~~~~~~~~~~~~l~~~la~~~~~~~-----~~~v~~--~~gg~~al~~~~--~~~~~~gd~  100 (393)
T 3kgw_A           34 LAPRVLAAGSLRMI----GHMQKEMLQIMEEIKQGIQYVFQTRN-----PLTLVV--SGSGHCAMETAL--FNLLEPGDS  100 (393)
T ss_dssp             CCHHHHHHTTCCCC----CTTSHHHHHHHHHHHHHHHHHHTCCC-----SEEEEE--SCCTTTHHHHHH--HHHCCTTCE
T ss_pred             CCHHHHHHhccccc----CcccHHHHHHHHHHHHHHHHHhCCCC-----CcEEEE--eCCcHHHHHHHH--HhcCCCCCE
Confidence            47888887765331    12222  3455788889998875431     345888  999999999984  344779999


Q ss_pred             EEEcCCCCcc--hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 012647          180 VLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV  257 (459)
Q Consensus       180 Vlv~~p~y~~--~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l  257 (459)
                      |+++.++|..  +...++..|++++.+|++  .++.+|++++++++++  .+++++++++||||||.+++   +++|.++
T Consensus       101 vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l~~i~~l  173 (393)
T 3kgw_A          101 FLTGTNGIWGMRAAEIADRIGARVHQMIKK--PGEHYTLQEVEEGLAQ--HKPVLLFLVHGESSTGVVQP---LDGFGEL  173 (393)
T ss_dssp             EEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECC---CTTHHHH
T ss_pred             EEEEeCCchhHHHHHHHHHcCCceEEEeCC--CCCCCCHHHHHHHHhh--CCCcEEEEeccCCcchhhcc---HHHHHHH
Confidence            9999988753  367788899999999984  3557999999999985  25667888999999999976   7789999


Q ss_pred             HHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc-ccCCCCcceEEEEeCChhHHHHHHHHHHhh
Q 012647          258 IQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARVKSQLKRL  336 (459)
Q Consensus       258 ~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~  336 (459)
                      |++||+++|+||+|...... .+         ....+.++++.|+||.+ |++|  +||+++   +++.++.+.......
T Consensus       174 ~~~~~~~li~De~~~~g~~~-~~---------~~~~~~d~~~~s~sK~~~~~~g--~g~~~~---~~~~~~~~~~~~~~~  238 (393)
T 3kgw_A          174 CHRYQCLLLVDSVASLGGVP-IY---------MDQQGIDIMYSSSQKVLNAPPG--ISLISF---NDKAKYKVYSRKTKP  238 (393)
T ss_dssp             HHHTTCEEEEECTTTTTTSC-CC---------TTTTTCCEEEEESSSTTCCCSS--CEEEEE---CHHHHHHHHTCSSCC
T ss_pred             HHHcCCEEEEECCccccCcc-cc---------hhhcCCCEEEecCcccccCCCc--eeEEEE---CHHHHHHHhccCCCC
Confidence            99999999999997632211 11         11224568889999976 4555  899877   777544433210000


Q ss_pred             -------------------ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Q 012647          337 -------------------ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDW  397 (459)
Q Consensus       337 -------------------~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~  397 (459)
                                         .+....+++..++.++...+..   ..  .+.+++.+++++++++++.+.|+ ++|    +
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~--~~~~~~~~~~~~~~~~~l~~~L~-~~g----~  308 (393)
T 3kgw_A          239 VSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLAL---IA--EQGLENCWRRHREATAHLHKHLQ-EMG----L  308 (393)
T ss_dssp             SCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHH---HH--HHCHHHHHHHHHHHHHHHHHHHH-HTT----C
T ss_pred             CceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHH---HH--HhhHHHHHHHHHHHHHHHHHHHH-HcC----C
Confidence                               0011123444444444333321   11  12367889999999999999999 876    4


Q ss_pred             ccccCC----cceeeecC----CCH-HHHHHHHhcccEEEcCCC--------cEEE-ccC-ChhhHHHHHHHHHHHHhhc
Q 012647          398 SFILRQ----IGMFSFTG----LNK-AQSDNMTNKWHVYMTKDG--------RISL-AGL-SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       398 ~~~~~~----~g~f~~~~----l~~-~~~~~ll~~~gI~v~~gg--------Ris~-~~~-~~e~i~~~~~~l~~~~~~~  458 (459)
                      ++..+.    .++++|+.    .+. ++.+.|++++||.+.+|.        ||++ +.. +++++++++++|+++++++
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~  388 (393)
T 3kgw_A          309 KFFVKDPEIRLPTITTVTVPAGYNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHC  388 (393)
T ss_dssp             CBSSSSGGGBCSSEEEEECCTTBCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHS
T ss_pred             eeccCChhhcCCeEEEEeCCCCCCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhh
Confidence            554332    23444432    344 556677776699999862        9998 533 8899999999999999865

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.96  E-value=6.2e-29  Score=248.01  Aligned_cols=310  Identities=11%  Similarity=0.012  Sum_probs=215.6

Q ss_pred             CcHHHHHHHHHHhhcCCCCCCCC--CcccHHHHHHHHHHHhcCCCCccccCc-eEEeecccchhHHHHHHHHHHHhCCCC
Q 012647          102 VLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQR-VATVQGLSGTGSLRLAAALIERYFPGA  178 (459)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~-i~~~~t~ggt~a~~l~~~~~~~~~~gd  178 (459)
                      +++.+.+++.+.+.    ..|.+  .....++++.+++++...      +++ +++  +.||+++++++.  ...+.+||
T Consensus        24 ~~~~v~~a~~~~~~----~~~~~~~~~~~~~~~~~la~~~~~~------~~~~v~~--~~sgt~al~~~~--~~~~~~gd   89 (411)
T 3nnk_A           24 ADPRVLRAMSSQLI----GQYDPAMTHYMNEVMALYRGVFRTE------NRWTMLV--DGTSRAGIEAIL--VSAIRPGD   89 (411)
T ss_dssp             CCHHHHHHHTSCCC----CTTCHHHHHHHHHHHHHHHHHHTCC------CSEEEEE--ESCHHHHHHHHH--HHHCCTTC
T ss_pred             CCHHHHHHhhcccc----ccccHHHHHHHHHHHHHHHHHhCCC------CCcEEEE--CCCcHHHHHHHH--HHhcCCCC
Confidence            47888888765431    22222  134578888888887543      333 667  889999999984  34478999


Q ss_pred             EEEEcCCCCcc--hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 012647          179 KVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD  256 (459)
Q Consensus       179 ~Vlv~~p~y~~--~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~  256 (459)
                      +|++++|+|..  +...++..|++++.+|+  +.++.+|++++++++++  .+++++++++||||||.+.+   +++|++
T Consensus        90 ~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l~~i~~  162 (411)
T 3nnk_A           90 KVLVPVFGRFGHLLCEIARRCRAEVHTIEV--PWGEVFTPDQVEDAVKR--IRPRLLLTVQGDTSTTMLQP---LAELGE  162 (411)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECC---CTTHHH
T ss_pred             EEEEecCCchHHHHHHHHHHcCCeEEEEec--CCCCCCCHHHHHHHHhh--CCCeEEEEeCCCCCcceecc---HHHHHH
Confidence            99999999977  88889999999999998  45678899999999985  25678888999999999965   778999


Q ss_pred             HHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC-cccCCCCcceEEEEeCChhHHHHHHHHH--
Q 012647          257 VIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN-LGLYAERIGAMNVVCSSSDLAARVKSQL--  333 (459)
Q Consensus       257 l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~~G~RiG~~~~v~~~~~~~~~~~~~~--  333 (459)
                      +|++||+++|+|+++..... ..+         ....+.++++.|+||. ++++  ++||+++   +++..+.+....  
T Consensus       163 l~~~~~~~li~Dea~~~~~~-~~~---------~~~~~~d~~~~s~~K~l~~~~--g~g~~~~---~~~~~~~~~~~~~~  227 (411)
T 3nnk_A          163 ICRRYDALFYTDATASLGGN-PLE---------TDVWGLDAVSAGMQKCLGGPS--GTSPITL---SARMEEAIRRRKCV  227 (411)
T ss_dssp             HHHHHTCEEEEECTTTBTTB-CCC---------TTTTTCSEEECCSTTTTCCCS--SEEEEEE---CHHHHHHHHTTCCC
T ss_pred             HHHHcCCEEEEECCcccCCc-ccc---------hhccCCcEEEecCccccCCCC--ceEEEEE---CHHHHHHHhhcccc
Confidence            99999999999999543221 111         1122457889999997 5544  5899877   777544443211  


Q ss_pred             --------------Hh----------------hccccccCCchHHHHHHHHHhCChhhHHHHHHH-HHHHHHHHHHHHHH
Q 012647          334 --------------KR----------------LARPMYSNPPVHGARIVANVVGNPALFDEWKAE-MEMMAGRIKNVRQK  382 (459)
Q Consensus       334 --------------~~----------------~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~  382 (459)
                                    ..                .......+++..++.++...+..      +.+. +++.++++++++++
T Consensus       228 ~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~------~~~~g~~~~~~~~~~~~~~  301 (411)
T 3nnk_A          228 EEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARL------ILQEGLDYGIARHKLHGDA  301 (411)
T ss_dssp             CGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHH------HHHHCHHHHHHHHHHHHHH
T ss_pred             cccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHH------HHHhhHHHHHHHHHHHHHH
Confidence                          00                00011123344444444333321      1222 67889999999999


Q ss_pred             HHHHHhhccCCCCCcccccCCc---ceeeec----CCCH-HHHHHHHhcccEEEcCC------C--cEEE-ccC-ChhhH
Q 012647          383 LFDSLSAKDKSGKDWSFILRQI---GMFSFT----GLNK-AQSDNMTNKWHVYMTKD------G--RISL-AGL-SLAKC  444 (459)
Q Consensus       383 l~~~L~~~~g~~~~~~~~~~~~---g~f~~~----~l~~-~~~~~ll~~~gI~v~~g------g--Ris~-~~~-~~e~i  444 (459)
                      +.+.|+ ++|    +++..+.+   +.++++    +.+. ++.+.|++++||.+.+|      +  ||++ +.. +++++
T Consensus       302 l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i  376 (411)
T 3nnk_A          302 LVKGIQ-AMG----LETFGDLKHKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCV  376 (411)
T ss_dssp             HHHHHH-HTT----CCBCSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHH
T ss_pred             HHHHHH-HcC----CEeCCCcccccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHH
Confidence            999999 876    45554443   344443    3344 45667777679999875      2  9998 533 78999


Q ss_pred             HHHHHHHHHHHhhc
Q 012647          445 EYLADAIIDSYHNV  458 (459)
Q Consensus       445 ~~~~~~l~~~~~~~  458 (459)
                      ++++++|+++++++
T Consensus       377 ~~~~~~l~~~l~~~  390 (411)
T 3nnk_A          377 MTTLSALEAVLNYL  390 (411)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999998764

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.96  E-value=2e-28  Score=246.47  Aligned_cols=335  Identities=14%  Similarity=0.054  Sum_probs=212.2

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...+|+..|.+....++.  +|.|.+++.+.++....+.| +.....++++++++++. .      +++|++  ++||+
T Consensus        54 g~~ylD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~-~------~~~v~~--~~sGs  121 (434)
T 3l44_A           54 GNKYIDYLAAYGPIITGHA--HPHITKAITTAAENGVLYGT-PTALEVKFAKMLKEAMP-A------LDKVRF--VNSGT  121 (434)
T ss_dssp             CCEEEECCGGGTTCSSCBT--CHHHHHHHHHHHHHCSCCSS-CCHHHHHHHHHHHHHCT-T------CSEEEE--ESSHH
T ss_pred             CCEEEECCCchhccccCCC--CHHHHHHHHHHHHhCcCCCC-CCHHHHHHHHHHHHhCC-C------CCEEEE--eCchH
Confidence            3578999998764444543  78999999988866433344 66677889999988853 1      688999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCC-CeeeeeeecCCCCC-------------CCHHHHHHHHHcCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARV-PWSEYRYYDPKTVG-------------LDFEGMIADIKAAP  227 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~-~v~~v~~~~~~~~~-------------~d~e~l~~~i~~~~  227 (459)
                      ++++++.++.....++++|++.+|+|..+.......+. .+..+... ...+.             .|++++++++++.+
T Consensus       122 ea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~  200 (434)
T 3l44_A          122 EAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTP-DSAGVPQSIAQEVITVPFNNVETLKEALDKWG  200 (434)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCB-SSTTCCHHHHTTEEEECTTCHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCC-CcCCCCCcCCCceEecCcccHHHHHHHHHhCC
Confidence            99999976654444789999999999876554433322 11111110 00000             18999999987533


Q ss_pred             CCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc
Q 012647          228 GGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (459)
Q Consensus       228 ~~~~~ii~~~p~NPTG~~~-s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  306 (459)
                      ++++++++++++|++|.+. +++.+++|.++|++||+++|+||+|.++ ..+   ....... ....++   +.||||.+
T Consensus       201 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g---~~~~~~~-~~~~~d---i~t~sK~~  272 (434)
T 3l44_A          201 HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFM---YGGAQDL-LGVTPD---LTALGKVI  272 (434)
T ss_dssp             GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSS---SSCHHHH-HTCCCS---EEEEEGGG
T ss_pred             CCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-ecc---ccHHHHH-cCCCCC---eeehhhhh
Confidence            3566777666666667655 8888999999999999999999999988 322   1112222 222333   34899999


Q ss_pred             ccCCCCcceEEEEeCChhHHHHHHHHHHh---hccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012647          307 GLYAERIGAMNVVCSSSDLAARVKSQLKR---LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKL  383 (459)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l  383 (459)
                      + +|+|+||+++   +++    +.+.+..   .....+.+.+.+++.++...|+...-        +...++++++++++
T Consensus       273 ~-~G~~iG~~~~---~~~----i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~--------~~~~~~~~~~~~~l  336 (434)
T 3l44_A          273 G-GGLPIGAYGG---KKE----IMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ--------EGLYEKLDELGATL  336 (434)
T ss_dssp             G-TTSSCEEEEE---CHH----HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS--------TTHHHHHHHHHHHH
T ss_pred             c-CCcCeeeEEE---cHH----HHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc--------ccHHHHHHHHHHHH
Confidence            9 8999999866   777    4443332   11222335666776666554431100        12233344444444


Q ss_pred             HHHHhh---ccCCCCCcccccCCcceeeec--C--C---------C----HHHHHHHHhcccEEEcCCC----cEEEccC
Q 012647          384 FDSLSA---KDKSGKDWSFILRQIGMFSFT--G--L---------N----KAQSDNMTNKWHVYMTKDG----RISLAGL  439 (459)
Q Consensus       384 ~~~L~~---~~g~~~~~~~~~~~~g~f~~~--~--l---------~----~~~~~~ll~~~gI~v~~gg----Ris~~~~  439 (459)
                      .+.|++   +++.   .....+.+.++.|.  +  .         +    .++.+.|++ +||.+.+++    |+++.. 
T Consensus       337 ~~~L~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~rl~~~~-  411 (434)
T 3l44_A          337 EKGILEQAAKHNI---DITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQ-EGVNLAPSKYEAWFLTTEH-  411 (434)
T ss_dssp             HHHHHHHHHHTTC---CEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHH-TTEECCSSTTCCEECCTTC-
T ss_pred             HHHHHHHHHhCCC---CEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHH-CCeEEeecCCCcEEEeccc-
Confidence            444440   3332   12334444444331  1  1         1    234556666 599999986    666544 


Q ss_pred             ChhhHHHHHHHHHHHHhhc
Q 012647          440 SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       440 ~~e~i~~~~~~l~~~~~~~  458 (459)
                      +++++++++++|+++++++
T Consensus       412 t~e~i~~~l~~l~~~l~~~  430 (434)
T 3l44_A          412 TKEDIEYTIEAVGRAFAAL  430 (434)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998764

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.96  E-value=9.5e-29  Score=247.07  Aligned_cols=310  Identities=11%  Similarity=0.011  Sum_probs=213.8

Q ss_pred             CcHHHHHHHHHHhhcCCCCCCCC--CcccHHHHHHHHHHHhcCCCCccccCceE-EeecccchhHHHHHHHHHHHhCCCC
Q 012647          102 VLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVA-TVQGLSGTGSLRLAAALIERYFPGA  178 (459)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~-~~~t~ggt~a~~l~~~~~~~~~~gd  178 (459)
                      +++.+.+++.+..    ...|.+  .....++++.+++++...      +++++ +  +.|+++++.++.  ...+.+||
T Consensus        22 ~~~~v~~a~~~~~----~~~~~~~~~~~~~~l~~~la~~~g~~------~~~~~~~--~~s~t~al~~~~--~~l~~~gd   87 (416)
T 3isl_A           22 VDPRVLRVMSTPV----VGQFDPAFTGIMNETMEMLRELFQTK------NRWAYPI--DGTSRAGIEAVL--ASVIEPED   87 (416)
T ss_dssp             CCHHHHHHTTSCC----CCTTSHHHHHHHHHHHHHHHHHTTCC------CSEEEEE--ESCHHHHHHHHH--HHHCCTTC
T ss_pred             cCHHHHHHhcccC----CCCccHHHHHHHHHHHHHHHHHhCCC------CCcEEEe--cCcHHHHHHHHH--HHhcCCCC
Confidence            4677776665421    123322  334678888888886532      45454 6  888999999984  44478999


Q ss_pred             EEEEcCCCCcc--hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 012647          179 KVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD  256 (459)
Q Consensus       179 ~Vlv~~p~y~~--~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~  256 (459)
                      +|++++|+|..  +...++..|++++.+|++  .++.+|++++++++++  ++++++++++||||||.+++   +++|.+
T Consensus        88 ~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l~~i~~  160 (416)
T 3isl_A           88 DVLIPIYGRFGYLLTEIAERYGANVHMLECE--WGTVFDPEDIIREIKK--VKPKIVAMVHGETSTGRIHP---LKAIGE  160 (416)
T ss_dssp             EEEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECC---CHHHHH
T ss_pred             EEEEecCCcccHHHHHHHHhcCCeeEEEecC--CCCCCCHHHHHHHHhh--CCCcEEEEEccCCCCceecC---HHHHHH
Confidence            99999999987  777888999999999984  4568899999999983  15678888999999999966   778999


Q ss_pred             HHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC-cccCCCCcceEEEEeCChhHHHHHHHHH--
Q 012647          257 VIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN-LGLYAERIGAMNVVCSSSDLAARVKSQL--  333 (459)
Q Consensus       257 l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~~G~RiG~~~~v~~~~~~~~~~~~~~--  333 (459)
                      +|++||+++|+|++|...... .+         ....+.++++.|+||. ++++  ++|++++   +++..+.+....  
T Consensus       161 l~~~~~~~li~D~a~~~~~~~-~~---------~~~~~~d~~~~s~~K~l~g~~--g~g~~~~---~~~~~~~~~~~~~~  225 (416)
T 3isl_A          161 ACRTEDALFIVDAVATIGGCE-VK---------VDEWKIDAAIGGTQKCLSVPS--GMAPITY---NERVADVIAARKKV  225 (416)
T ss_dssp             HHHHTTCEEEEECTTTTTTSC-CC---------TTTTTCSEEECCSSSTTCCCS--SEEEEEE---CHHHHHHHHTC---
T ss_pred             HHHHcCCEEEEECCccccCCC-cc---------hhhcCCCEEEecCccccCCCC--CeEEEEE---CHHHHHHhhccccc
Confidence            999999999999996532211 11         1122457889999997 5544  4899877   777555443110  


Q ss_pred             -----------------------------H---hhccccccCCchHHHHHHHHHhCChhhHHHHHHH-HHHHHHHHHHHH
Q 012647          334 -----------------------------K---RLARPMYSNPPVHGARIVANVVGNPALFDEWKAE-MEMMAGRIKNVR  380 (459)
Q Consensus       334 -----------------------------~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~-~~~~~~~~~~~~  380 (459)
                                                   .   ........+++..++.++...+..      +.+. +++.++++++++
T Consensus       226 ~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~------~~~~g~~~~~~~~~~~~  299 (416)
T 3isl_A          226 ERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRL------VLEEGLETRFERHRHHE  299 (416)
T ss_dssp             ---------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHH------HHHHCHHHHHHHHHHHH
T ss_pred             cccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHH------HHHhhHHHHHHHHHHHH
Confidence                                         0   001111223444444444333321      1223 678899999999


Q ss_pred             HHHHHHHhhccCCCCCcccccCCc---ceeeec----CCCH-HHHHHHHhcccEEEcCC------C--cEEEcc-CChhh
Q 012647          381 QKLFDSLSAKDKSGKDWSFILRQI---GMFSFT----GLNK-AQSDNMTNKWHVYMTKD------G--RISLAG-LSLAK  443 (459)
Q Consensus       381 ~~l~~~L~~~~g~~~~~~~~~~~~---g~f~~~----~l~~-~~~~~ll~~~gI~v~~g------g--Ris~~~-~~~e~  443 (459)
                      +++.+.|+ +.|    +++..+.+   +.++++    +.+. ++.+.|++++||.+.+|      +  ||++.. .++++
T Consensus       300 ~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e  374 (416)
T 3isl_A          300 AALAAGIK-AMG----LRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKE  374 (416)
T ss_dssp             HHHHHHHH-HTT----CCBCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHH
T ss_pred             HHHHHHHH-HcC----CEeccCccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHH
Confidence            99999999 776    46555543   334433    3344 45667777669999875      1  999843 25666


Q ss_pred             -HHHHHHHHHHHHhhc
Q 012647          444 -CEYLADAIIDSYHNV  458 (459)
Q Consensus       444 -i~~~~~~l~~~~~~~  458 (459)
                       +++++++|+++++++
T Consensus       375 ~i~~~~~~l~~~~~~~  390 (416)
T 3isl_A          375 NVLFVLAGLEAVLLRH  390 (416)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHc
Confidence             999999999998764

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.96  E-value=9.4e-28  Score=238.85  Aligned_cols=313  Identities=14%  Similarity=0.079  Sum_probs=206.9

Q ss_pred             eeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC--CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhH
Q 012647           86 LNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (459)
Q Consensus        86 i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~--~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (459)
                      .++++|.| |....+++.+.+.+++.........+.|.  +..+..++++.+++++..       + +.++  +.+|+++
T Consensus        23 ~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~-------~-~~i~--~~sG~~a   91 (398)
T 2rfv_A           23 STGALSTP-IFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERG-------E-AGLA--TASGISA   91 (398)
T ss_dssp             TTCCSSCC-CCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTC-------S-EEEE--ESSHHHH
T ss_pred             CCCCcCCC-CcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCC-------C-cEEE--ECCHHHH
Confidence            46788887 65565666677777766322211124444  567788999999998642       2 4445  5677799


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHh----hhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCC
Q 012647          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (459)
Q Consensus       164 ~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~  239 (459)
                      ++++.  ...+.+||+|++++|+|..+...+    +..|++++.+|..       |++++++++++   +++++++++|+
T Consensus        92 ~~~~l--~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~~---~~~~v~~~~~~  159 (398)
T 2rfv_A           92 ITTTL--LTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-------KPEEIRAAMRP---ETKVVYIETPA  159 (398)
T ss_dssp             HHHHH--HHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-------SHHHHHHHCCT---TEEEEEEESSB
T ss_pred             HHHHH--HHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-------CHHHHHHhcCC---CCeEEEEECCC
Confidence            99983  334679999999999999887776    7889999988762       89999999875   78899999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc-ceEEE
Q 012647          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNV  318 (459)
Q Consensus       240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~  318 (459)
                      ||||.+++   +++|+++|++||+++|+||+|..+.+..      ..     ..+.++++.|+||.++.+|+|+ ||+++
T Consensus       160 nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~------~~-----~~~~di~~~s~sK~~~~~g~~~~G~~~~  225 (398)
T 2rfv_A          160 NPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ------PL-----QLGADIVVHSVTKYINGHGDVIGGIIVG  225 (398)
T ss_dssp             TTTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC------GG-----GGTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred             CCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC------ch-----hhCCcEEEEeCcccccCCCCceEEEEEE
Confidence            99999975   8889999999999999999988766431      11     1246789999999999899999 99866


Q ss_pred             EeCChhHHHHHHHHHHhhcccc-ccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-----
Q 012647          319 VCSSSDLAARVKSQLKRLARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-----  392 (459)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-----  392 (459)
                         +++.++.   .+....... ..+.+.+++.++...|+..          ....++..++.+.+.+.|+ +.+     
T Consensus       226 ---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~l~~~l~-~~~~v~~~  288 (398)
T 2rfv_A          226 ---KQEFIDQ---ARFVGLKDITGGCMSPFNAWLTLRGVKTL----------GIRMERHCENALKIARFLE-GHPSITRV  288 (398)
T ss_dssp             ---CHHHHHH---HHHTHHHHTTCCCCCHHHHHHHHHHHTTH----------HHHHHHHHHHHHHHHHHHH-TCTTEEEE
T ss_pred             ---CHHHHHH---HHHHHHHhCCCCCCCHHHHHHHHhhhhhH----------HHHHHHHHHHHHHHHHHHH-cCCCeeEE
Confidence               7764441   222222222 2355666777776666542          1222334445555555565 432     


Q ss_pred             -CC-----CCcccccC----CcceeeecCCC--HHHHHHHHhcc---cEEEcCC--------------------------
Q 012647          393 -SG-----KDWSFILR----QIGMFSFTGLN--KAQSDNMTNKW---HVYMTKD--------------------------  431 (459)
Q Consensus       393 -~~-----~~~~~~~~----~~g~f~~~~l~--~~~~~~ll~~~---gI~v~~g--------------------------  431 (459)
                       .+     +++.+..+    .++++.| .+.  .+....++++.   ||.+.+|                          
T Consensus       289 ~~~~L~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g  367 (398)
T 2rfv_A          289 YYPGLSSHPQYELGQRQMSLPGGIISF-EIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAG  367 (398)
T ss_dssp             ECTTSTTSTTHHHHHHHCSSCCSEEEE-EETTHHHHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTT
T ss_pred             ECCCCCCCccHHHHHhhCCCCceEEEE-EEcCCHHHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcC
Confidence             00     01333332    4566655 443  23455555543   6665443                          


Q ss_pred             ---C--cEEEccC-ChhhHHHHHHHHHH
Q 012647          432 ---G--RISLAGL-SLAKCEYLADAIID  453 (459)
Q Consensus       432 ---g--Ris~~~~-~~e~i~~~~~~l~~  453 (459)
                         +  |||++.. ++++++.++++|++
T Consensus       368 ~~~~~iRls~~~~~~~~~i~~l~~al~~  395 (398)
T 2rfv_A          368 ITDGLIRLSVGLEDPEDIINDLEHAIRK  395 (398)
T ss_dssp             CCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecCCCHHHHHHHHHHHHHh
Confidence               2  9998864 45566666666654

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.96  E-value=1.2e-28  Score=240.49  Aligned_cols=309  Identities=12%  Similarity=0.006  Sum_probs=213.7

Q ss_pred             CcHHHHHHHHHHhhcCCCCCCC-CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEE
Q 012647          102 VLDVVKKAENLMLERGENKEYL-PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV  180 (459)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~-~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~V  180 (459)
                      +++.+.+++.+.+..   +.|. ...+..++|+++++++...    .+++++++  |+||+++++++.+   .+.. |+|
T Consensus        11 ~~~~v~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~~g~~----~~~~~v~~--t~g~t~a~~~~~~---~~~~-d~v   77 (353)
T 2yrr_A           11 IPERVQKALLRPMRG---HLDPEVLRVNRAIQERLAALFDPG----EGALVAAL--AGSGSLGMEAGLA---NLDR-GPV   77 (353)
T ss_dssp             CCHHHHGGGGSCCCC---TTCHHHHHHHHHHHHHHHHHHCCC----TTCEEEEE--SSCHHHHHHHHHH---TCSC-CCE
T ss_pred             CCHHHHHHHhccccc---ccCHHHHHHHHHHHHHHHHHhCCC----CCCceEEE--cCCcHHHHHHHHH---HhcC-CcE
Confidence            478899888776643   2232 2356889999999997432    23578988  9999999999732   2334 899


Q ss_pred             EEcCCCCcch--HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 012647          181 LISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVI  258 (459)
Q Consensus       181 lv~~p~y~~~--~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~  258 (459)
                      ++++|+|+.+  ...++..|++++.+|++  .++.+|++.+++.+++.  +++++++++|+||||.+++   +++|.++|
T Consensus        78 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~---~~~i~~l~  150 (353)
T 2yrr_A           78 LVLVNGAFSQRVAEMAALHGLDPEVLDFP--PGEPVDPEAVARALKRR--RYRMVALVHGETSTGVLNP---AEAIGALA  150 (353)
T ss_dssp             EEEECSHHHHHHHHHHHHTTCCEEEEECC--TTSCCCHHHHHHHHHHS--CCSEEEEESEETTTTEECC---HHHHHHHH
T ss_pred             EEEcCCCchHHHHHHHHHcCCceEEEeCC--CCCCCCHHHHHHHHHhC--CCCEEEEEccCCCcceecC---HHHHHHHH
Confidence            9999998875  45567889999999984  35679999999999852  4567788999999999976   66899999


Q ss_pred             HhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC-cccCCCCcceEEEEeCChhHHHHHHH------
Q 012647          259 QEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN-LGLYAERIGAMNVVCSSSDLAARVKS------  331 (459)
Q Consensus       259 ~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~~G~RiG~~~~v~~~~~~~~~~~~------  331 (459)
                      ++||+++|+|++|. ++...  .   .+..+    +.++++.|++|. ++++|  +||+++   +++..+.+..      
T Consensus       151 ~~~~~~li~D~a~~-~~~~~--~---~~~~~----~~d~~~~s~~K~~~~~~g--~G~~~~---~~~~~~~l~~~~~~~~  215 (353)
T 2yrr_A          151 KEAGALFFLDAVTT-LGMLP--F---SMRAM----GVDYAFTGSQKCLSAPPG--LAPIAA---SLEARKAFTGKRGWYL  215 (353)
T ss_dssp             HHHTCEEEEECTTT-TTTSC--C---CHHHH----TCSEEECCTTSTTCCCSS--CEEEEE---CHHHHHHCCCCSCSTT
T ss_pred             HHcCCeEEEEcCcc-ccccc--c---ccccc----CceEEEecCcccccCCCc--eEEEEE---CHHHHHHhccCCCccc
Confidence            99999999999984 33211  1   12221    235788899995 56566  799976   7775544320      


Q ss_pred             ---HH-Hhh-ccccccCCchHHHHHHHHHhCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCC--
Q 012647          332 ---QL-KRL-ARPMYSNPPVHGARIVANVVGNPALFDEWKAE-MEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ--  403 (459)
Q Consensus       332 ---~~-~~~-~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~--  403 (459)
                         .. ... ......+++..++.++...++.      +.+. +++++++++++++++.+.|+ ++|    +++..+.  
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~------~~~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~  284 (353)
T 2yrr_A          216 DLARVAEHWERGGYHHTTPVLLHYALLEALDL------VLEEGVAARERRAREVYAWVLEELK-ARG----FRPYPKASP  284 (353)
T ss_dssp             CHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHH------HHHHCHHHHHHHHHHHHHHHHHHHH-HTT----CEESCSSSB
T ss_pred             cHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHH------HHHhhHHHHHHHHHHHHHHHHHHHH-HCC----CccccCccC
Confidence               00 000 1111224555555544443321      1222 67888999999999999999 776    4555443  


Q ss_pred             cceeeecC----CCH-HHHHHHHhcccEEEcCC------C--cEEEc-cCChhhHH-HHHHHHHHHHhh
Q 012647          404 IGMFSFTG----LNK-AQSDNMTNKWHVYMTKD------G--RISLA-GLSLAKCE-YLADAIIDSYHN  457 (459)
Q Consensus       404 ~g~f~~~~----l~~-~~~~~ll~~~gI~v~~g------g--Ris~~-~~~~e~i~-~~~~~l~~~~~~  457 (459)
                      +++++|+.    .+. ++.+.|.+ +||.+.+|      +  ||++. ..++++++ +++++|+++++.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~  352 (353)
T 2yrr_A          285 LPTVLVVRPPEGVDADRLVRALYA-EGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL  352 (353)
T ss_dssp             CTTEEEEECCTTCCHHHHHHHHHH-TTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH-CCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence            45554443    344 44556666 59999875      2  99984 34889999 999999998864

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.96  E-value=4.3e-28  Score=243.72  Aligned_cols=338  Identities=9%  Similarity=-0.002  Sum_probs=219.9

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCC---CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN---KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~---~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      ...+|++.+.+....++  .+|.|.+++.+.++....   ..| +.....++++.+++++..      .+++|++  |+|
T Consensus        43 ~~ylD~~~~~~~~~lg~--~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~------~~~~v~~--~~g  111 (429)
T 1s0a_A           43 RRLVDGMSSWWAAIHGY--NHPQLNAAMKSQIDAMSHVMFGGI-THAPAIELCRKLVAMTPQ------PLECVFL--ADS  111 (429)
T ss_dssp             CEEEESSTTTTTCTTCB--SCHHHHHHHHHHHHHCSCCCCSSE-ECHHHHHHHHHHHHHSCT------TCCEEEE--ESS
T ss_pred             CEEEEcCccHhhccCCC--CCHHHHHHHHHHHHhccccccccc-CCHHHHHHHHHHHHhCCC------CCCEEEE--eCC
Confidence            45789888875333333  378999999988864321   133 233456788888887532      3789999  999


Q ss_pred             chhHHHHHHHHHHHh-C----CCCEEEEcCCCCcchHHHhh-hCC-------------CCeeeeeeec---CCCC-CCCH
Q 012647          160 GTGSLRLAAALIERY-F----PGAKVLISSPTWGNHKNIFN-DAR-------------VPWSEYRYYD---PKTV-GLDF  216 (459)
Q Consensus       160 gt~a~~l~~~~~~~~-~----~gd~Vlv~~p~y~~~~~~~~-~~G-------------~~v~~v~~~~---~~~~-~~d~  216 (459)
                      |+++++++.+++..+ .    |||+|++++|+|..+..... ..|             ..+..++...   +..+ .+|+
T Consensus       112 gtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  191 (429)
T 1s0a_A          112 GSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDM  191 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGG
T ss_pred             HHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHH
Confidence            999999986654322 2    58999999999987643222 211             1344555421   1123 5899


Q ss_pred             HHHHHHHHcCCCCcEEEEeCCC-CCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC
Q 012647          217 EGMIADIKAAPGGSFILLHGCA-HNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM  294 (459)
Q Consensus       217 e~l~~~i~~~~~~~~~ii~~~p-~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~  294 (459)
                      +.+++++++.++++++++++.+ |||||. .++++++++|+++|++||+++|+||+|.+++..+.   ...+. ......
T Consensus       192 ~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~---~~~~~-~~~~~~  267 (429)
T 1s0a_A          192 VGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK---LFACE-HAEIAP  267 (429)
T ss_dssp             HHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGG-GGTCCC
T ss_pred             HHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccch---HHHhh-hcCCCC
Confidence            9999999742235666665555 799996 56788899999999999999999999988864321   11111 112233


Q ss_pred             eEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhh-----ccccccCCchHHHHHHHHHhCChhhHHHHHHH
Q 012647          295 ELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRL-----ARPMYSNPPVHGARIVANVVGNPALFDEWKAE  368 (459)
Q Consensus       295 ~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~  368 (459)
                      +++   ||||.++ +| +|+||+++   +++.++.    +...     ....+.+.+.+++.++...|+..      .+ 
T Consensus       268 d~~---t~sK~l~-~G~~~iG~~~~---~~~~~~~----l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~------~~-  329 (429)
T 1s0a_A          268 DIL---CLGKALT-GGTMTLSATLT---TREVAET----ISNGEAGCFMHGPTFMGNPLACAAANASLAIL------ES-  329 (429)
T ss_dssp             SEE---EECGGGG-TSSSCCEEEEE---CHHHHHH----HHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHH------HT-
T ss_pred             CEE---Eeccccc-CCCccceEEEe---CHHHHHH----hhcCCCcccccCCCCCCCHHHHHHHHHHHHHH------Hh-
Confidence            433   7999999 68 99999976   7774433    3331     11223355677776665554311      00 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccC-CCCCcccccCCcceeeecCC----CH-HHHHHHHhcccEEEcCCC---cEEEcc-
Q 012647          369 MEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKDG---RISLAG-  438 (459)
Q Consensus       369 ~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~gg---Ris~~~-  438 (459)
                       +...++++++++++.+.|+ +++ .|. +..+.+. |.|+|+.+    +. ++.+.|++ +||.+.+.+   ||+++. 
T Consensus       330 -~~~~~~~~~~~~~l~~~L~-~l~~~~~-~~~~~~~-g~~~~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~~~iRis~~~~  404 (429)
T 1s0a_A          330 -GDWQQQVADIEVQLREQLA-PARDAEM-VADVRVL-GAIGVVETTHPVNMAALQKFFVE-QGVWIRPFGKLIYLMPPYI  404 (429)
T ss_dssp             -CHHHHHHHHHHHHHHHHHG-GGGGCTT-EEEEEEE-TTEEEEEESSCBCHHHHHHHHHH-TTEECCCBTTEEEECCCTT
T ss_pred             -CCHHHHHHHHHHHHHHHHH-HHhcCCC-EEEEEEe-eEEEEEEECCcccHHHHHHHHHH-CCCEEeccCCEEEEECCCC
Confidence             2345677778888999888 752 221 3334444 44666533    33 45666665 699999865   888542 


Q ss_pred             CChhhHHHHHHHHHHHHhhc
Q 012647          439 LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       439 ~~~e~i~~~~~~l~~~~~~~  458 (459)
                      .+++++++++++|+++++++
T Consensus       405 ~t~e~i~~~~~~l~~~~~~~  424 (429)
T 1s0a_A          405 ILPQQLQRLTAAVNRAVQDE  424 (429)
T ss_dssp             CCHHHHHHHHHHHHHHTSSG
T ss_pred             CCHHHHHHHHHHHHHHHHhh
Confidence            38999999999999988754

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.96  E-value=1.2e-28  Score=248.46  Aligned_cols=339  Identities=11%  Similarity=-0.037  Sum_probs=215.0

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...+||+.|.+....++  .+|.+.+++.+.+...  ..|....|..++++++++++....+... ++++++  |+||+
T Consensus        42 g~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~v~~--~~ggs  114 (439)
T 3dxv_A           42 GRELIDLSGAWGAASLGY--GHPAIVAAVSAAAANP--AGATILSASNAPAVTLAERLLASFPGEG-THKIWF--GHSGS  114 (439)
T ss_dssp             SCEEEESSTTTTTCTTCB--SCHHHHHHHHHHHHSC--SCSCSSSSEEHHHHHHHHHHHHTTTCTT-TEEEEE--ESSHH
T ss_pred             CCEEEECCCchhhccCCC--CCHHHHHHHHHHHHhc--cCccccccCCHHHHHHHHHHHHhCCCCC-CCEEEE--eCCHH
Confidence            356899999987444444  3789999999888653  3454455566666777766655543221 168999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhC-CCC--------------eeeeeeecCCCCCC-----CHHHHHH
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA-RVP--------------WSEYRYYDPKTVGL-----DFEGMIA  221 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-G~~--------------v~~v~~~~~~~~~~-----d~e~l~~  221 (459)
                      ++++.+.+++..+.++++|++.+|+|..+....... |..              +..+|..  ..+..     |+++|++
T Consensus       115 ea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~le~  192 (439)
T 3dxv_A          115 DANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYR--PYRNDPTGDAILTLLTE  192 (439)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSS--CBTTBTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCC--cccccccHHHHHHHHHH
Confidence            999999665444557789999999997654433333 322              1233331  11111     6899999


Q ss_pred             HHH-cCCCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012647          222 DIK-AAPGGSFILLHGCAHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (459)
Q Consensus       222 ~i~-~~~~~~~~ii~~~p~NPTG~~~s-~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~  299 (459)
                      +++ ..+++++++++++++|++|.+.+ ++.+++|.++|++||+++|+||+|.+++..+.   ..... ..+..++++  
T Consensus       193 ~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~---~~~~~-~~~~~~di~--  266 (439)
T 3dxv_A          193 KLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR---LHCFE-HEGFVPDIL--  266 (439)
T ss_dssp             HHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSS---SSGGG-GTTCCCSEE--
T ss_pred             HHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch---hhHHH-hcCCCCCEE--
Confidence            994 22346778888888888888654 45599999999999999999999998764321   11111 112223433  


Q ss_pred             EcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012647          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV  379 (459)
Q Consensus       300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~  379 (459)
                       ||||.++ +|+|+||+++   +++    +++.+.......+. .+.+++.++...|+...      +  +...++++++
T Consensus       267 -s~sK~~~-~G~riG~~~~---~~~----~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~------~--~~~~~~~~~~  328 (439)
T 3dxv_A          267 -VLGKGLG-GGLPLSAVIA---PAE----ILDCASAFAMQTLH-GNPISAAAGLAVLETID------R--DDLPAMAERK  328 (439)
T ss_dssp             -EECGGGG-TTSCCEEEEE---EHH----HHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHH------H--TTHHHHHHHH
T ss_pred             -EEcchhc-CCcceEEEEE---CHH----HHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHH------h--cCHHHHHHHH
Confidence             9999999 6999999976   777    44443332222333 56666666655543210      0  2334445555


Q ss_pred             HHHHHHHHhh---ccCCCCCcccccCCcceeeecCC-------------CHHHHHHHHhcccEEEcCCC------cEEEc
Q 012647          380 RQKLFDSLSA---KDKSGKDWSFILRQIGMFSFTGL-------------NKAQSDNMTNKWHVYMTKDG------RISLA  437 (459)
Q Consensus       380 ~~~l~~~L~~---~~g~~~~~~~~~~~~g~f~~~~l-------------~~~~~~~ll~~~gI~v~~gg------Ris~~  437 (459)
                      ++++.+.|++   +++.   +....+.|. |+|+.+             ..++.+.++++ ||.+.++|      ||+++
T Consensus       329 ~~~~~~~l~~~~~~~~~---~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~~~~iRi~~~  403 (439)
T 3dxv_A          329 GRLLRDGLSELAKRHPL---IGDIRGRGL-ACGMELVCDRQSREPARAETAKLIYRAYQL-GLVVYYVGMNGNVLEFTPP  403 (439)
T ss_dssp             HHHHHHHHHHHHHHCTT---EEEEEEETT-EEEEEEEEETTTTEECHHHHHHHHHHHHHH-TEECEEESTTSCEEEECCC
T ss_pred             HHHHHHHHHHHHHhCCC---eEEEEEEEE-EEEEEEecCccccCCCHHHHHHHHHHHHHC-CcEEeecCCCCCEEEEECC
Confidence            5555555540   2321   233444444 444422             12446677764 99998875      77654


Q ss_pred             cC-ChhhHHHHHHHHHHHHhhc
Q 012647          438 GL-SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       438 ~~-~~e~i~~~~~~l~~~~~~~  458 (459)
                      .. +++++++++++|+++++++
T Consensus       404 ~~~t~e~i~~~l~~l~~~l~~~  425 (439)
T 3dxv_A          404 LTITETDIHKALDLLDRAFSEL  425 (439)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTG
T ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Confidence            33 8999999999999998765

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.96  E-value=7e-28  Score=244.77  Aligned_cols=342  Identities=12%  Similarity=0.093  Sum_probs=223.7

Q ss_pred             CCCceeecccc-cCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           82 DEKKLNLGVGA-YRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~-~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      +.++++|+.|. |+|.....+ .+.+.+++.+.+..+. ..|.+..+..+||+++++++..        +++++  |+||
T Consensus        33 g~~~~~~~~g~~ylD~~~~~~-~~~v~~a~~~~~~~~~-~~y~~~~~~~~l~~~la~~~~~--------~~v~~--t~gg  100 (467)
T 1ax4_A           33 GYNPFLLPSSAVYIDLLTDSG-TNAMSDHQWAAMITGD-EAYAGSRNYYDLKDKAKELFNY--------DYIIP--AHQG  100 (467)
T ss_dssp             TSCGGGSCGGGCSEECSCSSS-CCCEEHHHHHHHHTCC-CCSSSCHHHHHHHHHHHHHHCC--------CEEEE--ESSH
T ss_pred             CcCcccCCCCceeeecccCcC-CHHHHHHHHHHHhhcc-cccccCccHHHHHHHHHHHcCC--------CcEEE--cCCc
Confidence            45677888775 334322222 2667777777665443 5788888999999999999742        57888  9999


Q ss_pred             hhHHHHHHHHHHHhC----CCCE---EEEcCCCCcchHHHhhhCCCCeeeeeeec---C-----CCCCCCHHHHHHHHHc
Q 012647          161 TGSLRLAAALIERYF----PGAK---VLISSPTWGNHKNIFNDARVPWSEYRYYD---P-----KTVGLDFEGMIADIKA  225 (459)
Q Consensus       161 t~a~~l~~~~~~~~~----~gd~---Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~---~-----~~~~~d~e~l~~~i~~  225 (459)
                      ++|++++.+.+  +.    +||+   |+++.+.|..+...+...|++++.++...   .     .++.+|+++|++++++
T Consensus       101 t~A~~~al~~~--~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~  178 (467)
T 1ax4_A          101 RGAENILFPVL--LKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQ  178 (467)
T ss_dssp             HHHHHHHHHHH--HHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--HHhhccCCCccceEEEeccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHh
Confidence            99999985544  55    8998   99997777888888888999888776531   1     1457899999999985


Q ss_pred             CC-CCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCCeeEEeccCCC---C-------CCCCCCCChhHHHHHHhcC
Q 012647          226 AP-GGSFILLHGCAHNPT-GIDPTPEQWEKIADVIQEKNHIPFFDVAYQG---F-------ASGSLDNDASSVRLFATRG  293 (459)
Q Consensus       226 ~~-~~~~~ii~~~p~NPT-G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~---~-------~~~~~~~~~~~~~~~~~~~  293 (459)
                      .. ++++++++++||||| |.+++.+++++|+++|++||+++|+|+++..   +       .+.+.  +...+..-....
T Consensus       179 ~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  256 (467)
T 1ax4_A          179 HGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNA--TIKEVIFDMYKY  256 (467)
T ss_dssp             HCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTC--CHHHHHHHHGGG
T ss_pred             cCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCC--chhhhhhhhccc
Confidence            21 257889999999999 8999999999999999999999999998432   0       22211  111111000011


Q ss_pred             CeEEEEEcCCcCcccCCCCcceEEEEeCCh-hHHHHHHHHHHhhcc-ccccCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012647          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSS-DLAARVKSQLKRLAR-PMYSNPPVHGARIVANVVGNPALFDEWKAEMEM  371 (459)
Q Consensus       294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~  371 (459)
                      .+ +++.|+||.+|++   +|+++ +..++ ++++.+......... ..+...+...+.++...|... .     +  ++
T Consensus       257 ~d-~~~~s~sK~~g~~---~Gg~~-~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~-----~--~~  323 (467)
T 1ax4_A          257 AD-ALTMSAKKDPLLN---IGGLV-AIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEG-T-----E--EE  323 (467)
T ss_dssp             CS-EEEEETTSTTCCS---SCEEE-EESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHT-T-----C--HH
T ss_pred             cc-eEEEeccccCCCC---cceEE-EeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHh-h-----h--hh
Confidence            22 4668999999865   44432 23336 755555433221110 112222332222222122110 0     0  01


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecC-------CC------HHHHHHHHhcccEEEcC--------
Q 012647          372 MAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTG-------LN------KAQSDNMTNKWHVYMTK--------  430 (459)
Q Consensus       372 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~-------l~------~~~~~~ll~~~gI~v~~--------  430 (459)
                      ..++..++++++.+.|+ +.+    +.+..+.+|+++|++       +.      .+++++|++++||.+.+        
T Consensus       324 ~~~~~~~~~~~l~~~L~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~  398 (467)
T 1ax4_A          324 YLHYRIGQVKYLGDRLR-EAG----IPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGR  398 (467)
T ss_dssp             HHHHHHHHHHHHHHHHH-HTT----CCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCB
T ss_pred             HHHHHHHHHHHHHHHHH-hCC----CCcccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCcccccc
Confidence            22223356778888888 654    566677888888876       32      24466674667999876        


Q ss_pred             ----C-------C--cEEEcc--CChhhHHHHHHHHHHHHhh
Q 012647          431 ----D-------G--RISLAG--LSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       431 ----g-------g--Ris~~~--~~~e~i~~~~~~l~~~~~~  457 (459)
                          |       +  ||+++.  .+++++++++++|++++++
T Consensus       399 ~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~  440 (467)
T 1ax4_A          399 DPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEK  440 (467)
T ss_dssp             CTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHH
T ss_pred             ccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence                2       3  899872  4899999999999988765

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.96  E-value=1.6e-27  Score=239.47  Aligned_cols=335  Identities=16%  Similarity=0.066  Sum_probs=219.9

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...+|++.|.+....++  .+|.|.+++.+.++....+ +.+.....+|++++++++..       +++|++  ++||+
T Consensus        52 g~~ylD~~~~~~~~~lG~--~~p~v~~A~~~~~~~~~~~-~~~~~~~~~l~~~la~~~~~-------~~~v~~--~~~Gs  119 (429)
T 3k28_A           52 GNEYIDYVLSWGPLIHGH--ANDRVVEALKAVAERGTSF-GAPTEIENKLAKLVIERVPS-------IEIVRM--VNSGT  119 (429)
T ss_dssp             CCEEEESCGGGTTCTTCB--SCHHHHHHHHHHHHHCSCC-SSCCHHHHHHHHHHHHHSTT-------CSEEEE--ESSHH
T ss_pred             CCEEEECCCChhhcccCC--CCHHHHHHHHHHHhhCcCc-CCCCHHHHHHHHHHHHhCCC-------CCEEEE--eCChH
Confidence            457899999986444454  3799999999888664323 44677888999999998531       578999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh-hCCCCeeeeeeecCCCCC------------CCHHHHHHHHHcCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEYRYYDPKTVG------------LDFEGMIADIKAAPG  228 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~G~~v~~v~~~~~~~~~------------~d~e~l~~~i~~~~~  228 (459)
                      ++++.+.++.....++++|++.+|+|..+..... ..|..+..++........            -|++++++.+++.++
T Consensus       120 ea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~  199 (429)
T 3k28_A          120 EATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGD  199 (429)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCC
Confidence            9999997665444477899999999976544333 233322222221011110            189999999875333


Q ss_pred             CcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc
Q 012647          229 GSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (459)
Q Consensus       229 ~~~~ii~~~p~NPTG~~~-s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (459)
                      +++++++.+++|++|.+. +++.+++|.++|++||+++|+||+|.++ ..+   ..... ...+..+++   .+|||.++
T Consensus       200 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g---~~~~~-~~~~~~~di---~t~sK~~~  271 (429)
T 3k28_A          200 DIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVA---YNCGQ-GYYGVTPDL---TCLGKVIG  271 (429)
T ss_dssp             GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSS---TTHHH-HHHTCCCSE---EEECGGGG
T ss_pred             CEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccC---cchHH-HHhCCCCce---ehhhhhhc
Confidence            566666665666666554 6788999999999999999999999888 432   12222 222333333   47999998


Q ss_pred             cCCCCcceEEEEeCChhHHHHHHHHHHhh---ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          308 LYAERIGAMNVVCSSSDLAARVKSQLKRL---ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF  384 (459)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~  384 (459)
                       .|+|+||+++   +++    +++.+...   ....+.+.+.+++.++...|+..+         ++..++++++++++.
T Consensus       272 -~G~~iG~~~~---~~~----~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~---------~~~~~~~~~~~~~l~  334 (429)
T 3k28_A          272 -GGLPVGAYGG---KAE----IMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT---------PESYVEFERKAEMLE  334 (429)
T ss_dssp             -TTSCCEEEEE---CHH----HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC---------HHHHHHHHHHHHHHH
T ss_pred             -CCCCeEEEEE---cHH----HHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Confidence             5999999876   777    44333221   112233667777777776665432         244556666666666


Q ss_pred             HHHhhcc----CCCCCcccccCCcceeeec--CC-----------C----HHHHHHHHhcccEEEcCCC----cEEEccC
Q 012647          385 DSLSAKD----KSGKDWSFILRQIGMFSFT--GL-----------N----KAQSDNMTNKWHVYMTKDG----RISLAGL  439 (459)
Q Consensus       385 ~~L~~~~----g~~~~~~~~~~~~g~f~~~--~l-----------~----~~~~~~ll~~~gI~v~~gg----Ris~~~~  439 (459)
                      +.|+ ++    +.   +..+.+.|.++.|.  +.           +    .++.+.|++ +||.+.|+|    |+++.. 
T Consensus       335 ~~L~-~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~r~~~~~-  408 (429)
T 3k28_A          335 AGLR-KAAEKHGI---PHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVE-QGVFLPPSQFEGLFLSTVH-  408 (429)
T ss_dssp             HHHH-HHHHHTTC---CCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTTSCBCCCTTC-
T ss_pred             HHHH-HHHhhCCC---CEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHH-CCeEEecCCCCCEEEECCC-
Confidence            6665 43    32   22344455544432  10           1    344566666 599999975    887655 


Q ss_pred             ChhhHHHHHHHHHHHHhhcC
Q 012647          440 SLAKCEYLADAIIDSYHNVS  459 (459)
Q Consensus       440 ~~e~i~~~~~~l~~~~~~~~  459 (459)
                      +++++++++++|++++++++
T Consensus       409 t~e~i~~~l~~l~~~l~~~~  428 (429)
T 3k28_A          409 SDADIEATIAAAEIAMSKLK  428 (429)
T ss_dssp             CHHHHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999998763

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.96  E-value=3.9e-28  Score=239.50  Aligned_cols=315  Identities=14%  Similarity=0.049  Sum_probs=201.5

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhH
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (459)
                      +++|++.|.+    . +++++.+.+++..     . ..|  ..-..++++.+++++..    . +++++++  ++||+++
T Consensus        29 ~v~~~~~~~~----~-~~~~~~v~~a~~~-----~-~~~--~~~~~~~~~~~a~~~g~----~-~~~~~~~--~~ggt~a   88 (374)
T 2aeu_A           29 ALYDLSGLSG----G-FLIDEKDKALLNT-----Y-IGS--SYFAEKVNEYGLKHLGG----D-ENDKCVG--FNRTSSA   88 (374)
T ss_dssp             GCEECSSCCC----C-CCCCHHHHHHHTS-----T-THH--HHHHHHHHHHHHHHHTC----C-TTEEEEE--ESSHHHH
T ss_pred             ceeeecccCC----C-CCCCHHHHHHHHH-----h-cCc--hHHHHHHHHHHHHHhCC----C-CcceEEE--EcChHHH
Confidence            6889998875    2 3458889888851     1 111  11112344444444322    1 2467888  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHH---HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEE-EEeCCCC
Q 012647          164 LRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI-LLHGCAH  239 (459)
Q Consensus       164 ~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~-ii~~~p~  239 (459)
                      +.++..   .+ +||+|++++|+|+.+..   .++..|++++.+         .|+++++++ +   +++++ +++++||
T Consensus        89 ~~~~~~---~~-~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v---------~d~~~l~~~-~---~~~~~~v~~~~p~  151 (374)
T 2aeu_A           89 ILATIL---AL-KPKKVIHYLPELPGHPSIERSCKIVNAKYFES---------DKVGEILNK-I---DKDTLVIITGSTM  151 (374)
T ss_dssp             HHHHHH---HH-CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE---------SCHHHHHTT-C---CTTEEEEEECBCT
T ss_pred             HHHHHH---hC-CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe---------CCHHHHHhc-C---CCccEEEEEccCC
Confidence            999843   34 99999999998876544   667789988877         278888877 3   36788 8889999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEE
Q 012647          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (459)
Q Consensus       240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (459)
                      ||||.  +.+++++|.++|++||+++|+||+|..+..+.. ......    .. ..+++++|+||.+  +|+|+||+++ 
T Consensus       152 nptG~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~-~~~~~~----~~-~~di~~~S~sK~l--~g~~~G~~~~-  220 (374)
T 2aeu_A          152 DLKVI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLF-NQPPAL----KL-GADLVVTSTDKLM--EGPRGGLLAG-  220 (374)
T ss_dssp             TSCBC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHT-TCCCHH----HH-TCSEEEEETTSSS--SSCSCEEEEE-
T ss_pred             CCCCC--CcccHHHHHHHHHHcCCEEEEECCccccccccc-ccCCcc----cc-CCcEEEecCcccc--cCcceEEEEE-
Confidence            99997  669999999999999999999999876631000 000011    11 2468889999985  5789999866 


Q ss_pred             eCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH----HHHHHHHHhhccCCCC
Q 012647          320 CSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV----RQKLFDSLSAKDKSGK  395 (459)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~L~~~~g~~~  395 (459)
                        +++.++.+....    .....+++.+.+.++...|.....     +.+++..+..+..    ++.+.+.|. .+.-..
T Consensus       221 --~~~~~~~l~~~~----~~~~~~~~~~~~~a~~~al~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~  288 (374)
T 2aeu_A          221 --KKELVDKIYIEG----TKFGLEAQPPLLAGIYRALKNFNL-----ERIRKAFERAKNFDLSKIEKLNKELK-AIDDNI  288 (374)
T ss_dssp             --EHHHHHHHHHHH----HTTTCBCCHHHHHHHHHHHHHCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHT-TTCTTE
T ss_pred             --CHHHHHHHHHhh----ccccCCCCHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhcc
Confidence              777555554332    222224566666666655543211     0112222222222    556666665 431000


Q ss_pred             Ccccc-cCCcceeeecCCCH--H------HHHHHHhcccEEEcCCC---------cEEEccCC--hhhHHHHHHHHHHHH
Q 012647          396 DWSFI-LRQIGMFSFTGLNK--A------QSDNMTNKWHVYMTKDG---------RISLAGLS--LAKCEYLADAIIDSY  455 (459)
Q Consensus       396 ~~~~~-~~~~g~f~~~~l~~--~------~~~~ll~~~gI~v~~gg---------Ris~~~~~--~e~i~~~~~~l~~~~  455 (459)
                      ++.+. .+.+.+|.|.....  +      ++.++++++||.+.||.         ||+++..+  +++++++.++|++++
T Consensus       289 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l  368 (374)
T 2aeu_A          289 NIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESI  368 (374)
T ss_dssp             EEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHH
T ss_pred             CcceeeCCceEEEEeecccccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHH
Confidence            13443 45555556654432  1      55677777899998861         99987532  334899999999988


Q ss_pred             hhc
Q 012647          456 HNV  458 (459)
Q Consensus       456 ~~~  458 (459)
                      +++
T Consensus       369 ~~~  371 (374)
T 2aeu_A          369 KMA  371 (374)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.96  E-value=1.2e-29  Score=252.44  Aligned_cols=316  Identities=12%  Similarity=0.049  Sum_probs=194.2

Q ss_pred             ccCcHHHHHHHHHHhhcC---CCCCCC----CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHH
Q 012647          100 PYVLDVVKKAENLMLERG---ENKEYL----PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIE  172 (459)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~---~~~~Y~----~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~  172 (459)
                      .++++.+.+++.+.+...   ....|.    ......++++.+++++..      ++++|++  |+|++++++++.+.+.
T Consensus        30 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~------~~~~v~~--~~g~t~al~~~~~~l~  101 (400)
T 3vax_A           30 TRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSA------EPDELIF--TSGATESNNIALLGLA  101 (400)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTC------CGGGEEE--ESCHHHHHHHHHHTTH
T ss_pred             CCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCC------CCCcEEE--eCCHHHHHHHHHHHHH
Confidence            345899999998877531   001121    123457788888888643      2678999  9999999999844331


Q ss_pred             H--hCCCC-EEEEcCCCCcchHHHhh---hCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCC
Q 012647          173 R--YFPGA-KVLISSPTWGNHKNIFN---DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDP  246 (459)
Q Consensus       173 ~--~~~gd-~Vlv~~p~y~~~~~~~~---~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~  246 (459)
                      .  ..+|| +|+++.++|+.+...+.   ..|++++.+|++  .++.+|++++++++++   +++++++++||||||.++
T Consensus       102 ~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~  176 (400)
T 3vax_A          102 PYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPG--PSGRISVEGVMERLRP---DTLLVSLMHVNNETGVIQ  176 (400)
T ss_dssp             HHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCC--TTCCCCHHHHHTTCCT---TEEEEECCSBCTTTCBBC
T ss_pred             HhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccC--CCCCcCHHHHHHhcCC---CceEEEEECCCCCceeeC
Confidence            1  16899 99999999988766554   469999999984  4678999999999875   788999999999999996


Q ss_pred             CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHH
Q 012647          247 TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLA  326 (459)
Q Consensus       247 s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~  326 (459)
                      +   +++|.++|++||+++|+|++|.....      ...    .... .++++.|+||.+|++|  +|++++ +.+++..
T Consensus       177 ~---l~~i~~la~~~~~~li~D~a~~~~~~------~~~----~~~~-~d~~~~s~~K~~g~~g--~g~~~~-~~~~~~~  239 (400)
T 3vax_A          177 P---VAELAQQLRATPTYLHVDAAQGYGKV------PGD----LTTP-IDMISISGHKIGAPKG--VGALVT-RRREEMD  239 (400)
T ss_dssp             C---HHHHHHHHTTSSCEEEEECTTTTTTS------GGG----GGSC-CSEEEEETGGGTSCSS--CEEEEE-CBCSSST
T ss_pred             c---HHHHHHHHHhcCCEEEEEhhhhcCCC------CcC----hhhc-CcEEEEeHHHhCCCCc--eEEEEE-ecchhcc
Confidence            6   67899999999999999999763221      111    1222 5688999999888666  677740 2331100


Q ss_pred             ---HHHHHHHH---hhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012647          327 ---ARVKSQLK---RLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  400 (459)
Q Consensus       327 ---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  400 (459)
                         ..+...+.   .........++..++.++...++   +   +.+.+++++++++++++++.+.|+ ..|    +.+.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~---~---~~~~~~~~~~~~~~~~~~l~~~L~-~~~----~~~~  308 (400)
T 3vax_A          240 DERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAK---I---FEAEHAQWQVAAQDLRSRLLAGLA-STS----FQVN  308 (400)
T ss_dssp             TCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHH---H---HHHSHHHHHHHHHHHHHHHHHHHT-TTT----CEEC
T ss_pred             ccccccCceecCCCceeeeecCCCCHHHHHHHHHHHH---H---HHhhHHHHHHHHHHHHHHHHHhhC-CCC----EEEe
Confidence               00111110   00011122344444444433332   1   123467888999999999999997 544    4655


Q ss_pred             cCCc----ceeee--cCCCHHHHHHHHhcccEEEcCC-------------------------C--cEEE-ccC-ChhhHH
Q 012647          401 LRQI----GMFSF--TGLNKAQSDNMTNKWHVYMTKD-------------------------G--RISL-AGL-SLAKCE  445 (459)
Q Consensus       401 ~~~~----g~f~~--~~l~~~~~~~ll~~~gI~v~~g-------------------------g--Ris~-~~~-~~e~i~  445 (459)
                      .+.+    +++.+  .+.+.+.+...+. +||.+.+|                         +  ||++ +.. ++++++
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~  387 (400)
T 3vax_A          309 GDQDHVVPHILNLSFEDVDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVE  387 (400)
T ss_dssp             SCTTSBCTTEEEEECTTCCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC--------
T ss_pred             CCcccCCCCEEEEEeCCCCHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHH
Confidence            5543    23322  2445555444444 69988874                         4  9999 543 789999


Q ss_pred             HHHHHHHHHHhh
Q 012647          446 YLADAIIDSYHN  457 (459)
Q Consensus       446 ~~~~~l~~~~~~  457 (459)
                      +++++|++++++
T Consensus       388 ~~~~~l~~~~~~  399 (400)
T 3vax_A          388 ELARGVAKLKPS  399 (400)
T ss_dssp             ------------
T ss_pred             HHHHHHHHHhcc
Confidence            999999998764

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.96  E-value=5.3e-28  Score=242.88  Aligned_cols=329  Identities=12%  Similarity=0.019  Sum_probs=209.8

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...+|++.|.+....++  .+|.|.+++.+.++....+.| +.....++++.+++++.       .+++|++  ++||+
T Consensus        51 g~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~-------~~~~v~~--~~ggs  118 (427)
T 3fq8_A           51 GNRYIDYVGTWGPAICGH--AHPEVIEALKVAMEKGTSFGA-PCALENVLAEMVNDAVP-------SIEMVRF--VNSGT  118 (427)
T ss_dssp             SCEEEESSGGGTTCTTCB--TCHHHHHHHHHHHTTCSCCSS-CCHHHHHHHHHHHHHST-------TCSEEEE--ESSHH
T ss_pred             CCEEEECCCchhhhccCC--CCHHHHHHHHHHHHhCCCcCC-CCHHHHHHHHHHHHhCC-------CCCEEEE--eCCHH
Confidence            357899999986444454  379999999998865432334 44444556666665532       2688999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhC-CCC-------------------eeeeeeecCCCCCCCHHHHHH
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA-RVP-------------------WSEYRYYDPKTVGLDFEGMIA  221 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-G~~-------------------v~~v~~~~~~~~~~d~e~l~~  221 (459)
                      ++++++.++...+..+++|++.+|+|..+....... |..                   +..+|.       -|++++++
T Consensus       119 ea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~  191 (427)
T 3fq8_A          119 EACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY-------NDLEAVKA  191 (427)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEET-------TCHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCC-------CCHHHHHH
Confidence            999999766555556689999999997654433322 211                   122221       18999999


Q ss_pred             HHHcCCCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEE
Q 012647          222 DIKAAPGGSFILLHGCAHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (459)
Q Consensus       222 ~i~~~~~~~~~ii~~~p~NPTG~~~s-~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  300 (459)
                      .+++.++++++++++.++|++|.+.+ ++.+++|.++|++||+++|+||+|.++ ..+   ...... .....++   +.
T Consensus       192 ~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g---~~~~~~-~~~~~~d---i~  263 (427)
T 3fq8_A          192 LFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIA---YGGVQE-KFGVTPD---LT  263 (427)
T ss_dssp             HHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTB---TTHHHH-HTTCCCS---EE
T ss_pred             HHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccC---cchhhH-hcCCCCC---hh
Confidence            99875556778887878888887665 555999999999999999999999988 322   112221 1222233   35


Q ss_pred             cCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhh---ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012647          301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRL---ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  377 (459)
Q Consensus       301 S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  377 (459)
                      ||||.++ +|+|+||+++   +++    +.+.+...   ....+.+.+.+++.++...|+...-        +...++++
T Consensus       264 t~sK~~~-~G~~~G~~~~---~~~----~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~--------~~~~~~~~  327 (427)
T 3fq8_A          264 TLGKIIG-GGLPVGAYGG---KRE----IMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ--------PGTYEYLD  327 (427)
T ss_dssp             EECGGGG-TTSSCEEEEE---CHH----HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS--------TTHHHHHH
T ss_pred             hhhhhhh-CCcceEEEEE---cHH----HHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh--------cCHHHHHH
Confidence            8999999 8999999866   887    43333321   1122224566666666554431100        12233344


Q ss_pred             HHHHHHHHHHhh---ccCCCCCcccccCCcceeeecCC-----C-------------HHHHHHHHhcccEEEcCCC--cE
Q 012647          378 NVRQKLFDSLSA---KDKSGKDWSFILRQIGMFSFTGL-----N-------------KAQSDNMTNKWHVYMTKDG--RI  434 (459)
Q Consensus       378 ~~~~~l~~~L~~---~~g~~~~~~~~~~~~g~f~~~~l-----~-------------~~~~~~ll~~~gI~v~~gg--Ri  434 (459)
                      ++++++.+.|++   +++.    ....+..|+++|+.+     .             .++.+.|++ +||.+.+++  |+
T Consensus       328 ~~~~~~~~~l~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~~~r~  402 (427)
T 3fq8_A          328 QITKRLSDGLLAIAQETGH----AACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLE-QGIYLAPSQFEAG  402 (427)
T ss_dssp             HHHHHHHHHHHHHHHHTTC----CCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTTSCE
T ss_pred             HHHHHHHHHHHHHHHhCCC----CeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHH-CCcEEecCCCCCE
Confidence            444444444430   3332    222233355554422     1             244556666 599999987  77


Q ss_pred             EEccC-ChhhHHHHHHHHHHHHhhc
Q 012647          435 SLAGL-SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       435 s~~~~-~~e~i~~~~~~l~~~~~~~  458 (459)
                      ++... +++++++++++|+++++++
T Consensus       403 ~~~~~~t~e~i~~~l~~l~~~l~~~  427 (427)
T 3fq8_A          403 FTSLAHTEEDIDATLAAARTVMSAL  427 (427)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             EeeCcCCHHHHHHHHHHHHHHHHhC
Confidence            76543 8999999999999998764

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.96  E-value=8.5e-28  Score=236.98  Aligned_cols=322  Identities=15%  Similarity=0.106  Sum_probs=212.9

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCC--cccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~--~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      ...+|+.|.       .++++.+.+++.+.+..    .|.+.  .-..++++.+++++..    +.+.+.+++  |+||+
T Consensus        19 ~~~~~~pgp-------~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~g~----~~~~~~i~~--~~ggt   81 (376)
T 3f0h_A           19 GMLNFTVGP-------VMSSEEVRAIGAEQVPY----FRTTEFSSTMLENEKFMLEYAKA----PEGSKAVFM--TCSST   81 (376)
T ss_dssp             SCEECSSSS-------CCCCHHHHHHHTSCCCC----CSSHHHHHHHHHHHHHHHHHHTC----CTTCEEEEE--SSCHH
T ss_pred             CceeecCCC-------CCCcHHHHHHhcCCCCC----CCCHHHHHHHHHHHHHHHHHhCC----CCCceEEEE--cCChh
Confidence            345666542       23488898888764421    22221  2334566666666533    211244556  88999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchH--HHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHK--NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~--~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~  239 (459)
                      ++++++.  ...+.+||+|++++|+|..+.  ..+...|++++.+|.  +.++.+|++++++.+++   +++++++++||
T Consensus        82 ~al~~~~--~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~~~~---~~~~v~~~~~~  154 (376)
T 3f0h_A           82 GSMEAVV--MNCFTKKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKL--EHGKKLTKEKLYEYDNQ---NFTGLLVNVDE  154 (376)
T ss_dssp             HHHHHHH--HHHCCTTCCEEEEESSHHHHHHHHHHHHTTCCEEEEEC--CTTCCCCHHHHHTTTTS---CCCEEEEESEE
T ss_pred             HHHHHHH--HhccCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeC--CCCCCCCHHHHHHhhcc---CceEEEEeccc
Confidence            9999984  444679999999999776654  346778999999998  44678999999987754   67888889999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc-cCCCCcceEEE
Q 012647          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNV  318 (459)
Q Consensus       240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~~~  318 (459)
                      ||||.+++   +++|+++|++||+++|+|++|......   .   .+    ...+.++++.|+||.++ ++|  +|++++
T Consensus       155 nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~---~---~~----~~~~~d~~~~s~~K~l~~~~G--~g~~~~  219 (376)
T 3f0h_A          155 TSTAVLYD---TMMIGEFCKKNNMFFVCDCVSAFLADP---F---NM----NECGADVMITGSQKVLACPPG--ISVIVL  219 (376)
T ss_dssp             TTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSC---C---CH----HHHTCSEEEEETTTTTCCCSS--CEEEEE
T ss_pred             CCcceecC---HHHHHHHHHHcCCEEEEEcCccccCcc---c---cc----cccCccEEEecCcccccCCCc--eEEEEE
Confidence            99999987   888999999999999999997655421   1   11    11134688899999998 666  677766


Q ss_pred             EeCChhHHHHHHHH------------HHhhc-cccccCCchHHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHH
Q 012647          319 VCSSSDLAARVKSQ------------LKRLA-RPMYSNPPVHGARIVANVVGNPALFDEWKA-EMEMMAGRIKNVRQKLF  384 (459)
Q Consensus       319 v~~~~~~~~~~~~~------------~~~~~-~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~l~  384 (459)
                         +++..+.+...            ..... ......++..++.++...+.   +..  .. .+++++++++++++++.
T Consensus       220 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~---~~~--~~~~~~~~~~~~~~~~~~l~  291 (376)
T 3f0h_A          220 ---APRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLK---EIK--KHGGADAEVARIASQAADFR  291 (376)
T ss_dssp             ---CHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHH---HHH--HTTHHHHHHHHHHHHHHHHH
T ss_pred             ---CHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHH---HHH--HhcCHHHHHHHHHHHHHHHH
Confidence               77754444320            00000 01111333322222222221   110  11 36788899999999999


Q ss_pred             HHHhhccCCCCCcccccCC--cceeeec--CCCH-HHHHHHHhcccEEEcCCC--------cEEEcc-CChhhHHHHHHH
Q 012647          385 DSLSAKDKSGKDWSFILRQ--IGMFSFT--GLNK-AQSDNMTNKWHVYMTKDG--------RISLAG-LSLAKCEYLADA  450 (459)
Q Consensus       385 ~~L~~~~g~~~~~~~~~~~--~g~f~~~--~l~~-~~~~~ll~~~gI~v~~gg--------Ris~~~-~~~e~i~~~~~~  450 (459)
                      +.|+ ++|    +++..+.  .+++.+.  +.+. ++.+.|.+++||.+.+|.        ||++.. .+++++++++++
T Consensus       292 ~~L~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~  366 (376)
T 3f0h_A          292 AKIK-DLP----FELVSESPANGVTSVHPTTANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNA  366 (376)
T ss_dssp             HHTT-TSS----EEECCSSBBTTEEEEEESSSCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHH
T ss_pred             HHHH-HcC----CccCccccCceEEEEeCCCCCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHH
Confidence            9999 876    4444433  2333332  4454 456677776699998762        999864 389999999999


Q ss_pred             HHHHHhh
Q 012647          451 IIDSYHN  457 (459)
Q Consensus       451 l~~~~~~  457 (459)
                      |++++++
T Consensus       367 l~~~l~~  373 (376)
T 3f0h_A          367 FKDLQKR  373 (376)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9999875

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.96  E-value=1.7e-27  Score=235.96  Aligned_cols=305  Identities=14%  Similarity=0.040  Sum_probs=211.7

Q ss_pred             CcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH-hCCCCEE
Q 012647          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKV  180 (459)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~-~~~gd~V  180 (459)
                      +.+.+.+++.+.+..+. ..|.+..+..++|+++++++..       ++.|++  ++| |++++++  +... +.+||+|
T Consensus        15 ~~~~~~~a~~~~l~~~~-~~~~~~~~~~~l~~~la~~~~~-------~~~i~~--~sG-t~al~~~--l~~l~~~~gd~V   81 (388)
T 1b9h_A           15 YDDAERNGLVRALEQGQ-WWRMGGDEVNSFEREFAAHHGA-------AHALAV--TNG-THALELA--LQVMGVGPGTEV   81 (388)
T ss_dssp             CCHHHHHHHHHHHHTSC-CBTTTCSHHHHHHHHHHHHTTC-------SEEEEE--SCH-HHHHHHH--HHHTTCCTTCEE
T ss_pred             CCHHHHHHHHHHHHcCC-eeecCCHHHHHHHHHHHHHhCC-------CeEEEe--CCH-HHHHHHH--HHHcCCCCcCEE
Confidence            45899999999887643 5677888999999999999743       245666  655 9999998  3333 5699999


Q ss_pred             EEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Q 012647          181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE  260 (459)
Q Consensus       181 lv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~  260 (459)
                      +++.|+|..+...++..|++++.+|++ ++++.+|++.+++++++   ++++++   |+||||.+   .++++|.++|++
T Consensus        82 i~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~i~~---~~~~v~---~~n~tG~~---~~l~~i~~la~~  151 (388)
T 1b9h_A           82 IVPAFTFISSSQAAQRLGAVTVPVDVD-AATYNLDPEAVAAAVTP---RTKVIM---PVHMAGLM---ADMDALAKISAD  151 (388)
T ss_dssp             EEESSSCTHHHHHHHHTTCEEEEECBC-TTTCCBCHHHHHHHCCT---TEEEEC---CBCGGGCC---CCHHHHHHHHHH
T ss_pred             EECCCccHHHHHHHHHcCCEEEEEecC-CCcCCCCHHHHHHhcCc---CceEEE---EeCCccCc---CCHHHHHHHHHH
Confidence            999999999999999999999999985 33588999999999965   677666   89999999   567889999999


Q ss_pred             cCCeeEEeccCCCC-CCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhH--HHHHHHHHHhhc
Q 012647          261 KNHIPFFDVAYQGF-ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDL--AARVKSQLKRLA  337 (459)
Q Consensus       261 ~~~~ii~Deay~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~--~~~~~~~~~~~~  337 (459)
                      ||+++|+|++|... .+.+.     .+    ...+ ++.+.||||..+++|.|.||+++  .++..  .+.+... ....
T Consensus       152 ~~~~li~D~a~~~g~~~~~~-----~~----~~~~-~i~~~S~s~~K~l~g~~~G~~~~--~~~~~~~~~~~~~~-~~~~  218 (388)
T 1b9h_A          152 TGVPLLQDAAHAHGARWQGK-----RV----GELD-SIATFSFQNGKLMTAGEGGAVVF--PDGETEKYETAFLR-HSCG  218 (388)
T ss_dssp             HTCCBCEECTTCTTCEETTE-----EG----GGSS-SCEEEECCTTSSSCSSSCEEEEE--CTTCHHHHHHHHHH-TBTT
T ss_pred             cCCEEEEecchhcCCccCCe-----ec----cccc-ceEEEEccCCCcccCCCeEEEEE--CCHHHHHHHHHHHH-HhCC
Confidence            99999999998753 22211     11    1112 57888999777777789999854  33333  3333221 1100


Q ss_pred             c-----------cccc-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc----
Q 012647          338 R-----------PMYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL----  401 (459)
Q Consensus       338 ~-----------~~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~----  401 (459)
                      .           ..+. ..+.+...++...+          +.+++..++++++++++.+.|+ +++   ++.+..    
T Consensus       219 ~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~----------~~l~~~~~~~~~~~~~l~~~L~-~~~---~~~~~~~~~~  284 (388)
T 1b9h_A          219 RPRDDRRYFHKIAGSNMRLNEFSASVLRAQL----------ARLDEQIAVRDERWTLLSRLLG-AID---GVVPQGGDVR  284 (388)
T ss_dssp             CCTTCSSCCCCSCCCBCBCBHHHHHHHHHHH----------TTHHHHHHHHHHHHHHHHHHHH-TST---TCEECCCCTT
T ss_pred             CCccCccceeecccccCCcCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhc-cCC---CccccCCCcC
Confidence            0           0011 12222222221111          2245677888889999999998 762   144443    


Q ss_pred             --CCcceeeecCCC------H-HHHHHHHhcccEEEcCC---------------------------C----------cEE
Q 012647          402 --RQIGMFSFTGLN------K-AQSDNMTNKWHVYMTKD---------------------------G----------RIS  435 (459)
Q Consensus       402 --~~~g~f~~~~l~------~-~~~~~ll~~~gI~v~~g---------------------------g----------Ris  435 (459)
                        +.+++++|+.+.      . ++.+.|.+ +||.+.++                           +          ||+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~  363 (388)
T 1b9h_A          285 ADRNSHYMAMFRIPGLTEERRNALVDRLVE-AGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLH  363 (388)
T ss_dssp             CCBCCCSEEEEECTTCCHHHHHHHHHHHHH-TTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEE
T ss_pred             CCccceEEEEEEeCCcCcccHHHHHHHHHH-CCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEec
Confidence              355677776542      2 34556655 69988643                           0          555


Q ss_pred             Ec-cC-ChhhHHHHHHHHHHHHhh
Q 012647          436 LA-GL-SLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       436 ~~-~~-~~e~i~~~~~~l~~~~~~  457 (459)
                      +. .. +++++++++++|++++++
T Consensus       364 ~~~~~~t~edi~~~~~~l~~~~~~  387 (388)
T 1b9h_A          364 HRVLLAGEPELHATAEIIADAVAR  387 (388)
T ss_dssp             GGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhh
Confidence            54 35 789999999999998875

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.96  E-value=5.6e-28  Score=238.88  Aligned_cols=326  Identities=13%  Similarity=0.048  Sum_probs=219.2

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCC--cccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~--~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +.+.|+.|-       ..+++.+.+++.+....    .|.|.  ....++++++++++....+  +++++|++  |+||+
T Consensus         5 ~~~~~~p~p-------~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~v~~--~~g~t   69 (385)
T 2bkw_A            5 VDTLLIPGP-------IILSGAVQKALDVPSLG----HTSPEFVSIFQRVLKNTRAVFKSAAA--SKSQPFVL--AGSGT   69 (385)
T ss_dssp             CCEECSSSS-------CCCCHHHHHTTSCCCCC----TTSHHHHHHHHHHHHHHHHHTTCCGG--GTCEEEEE--ESCTT
T ss_pred             cceeecCCC-------cCchHHHHHHHhccccc----cCCHHHHHHHHHHHHHHHHHhCCCCC--CCCceEEE--cCchH
Confidence            445666542       23478888877654321    23332  2567889999999765433  34688999  99999


Q ss_pred             hHHHHHHHHHHHh---CCCCEEEEc-CCCCcch-HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeC
Q 012647          162 GSLRLAAALIERY---FPGAKVLIS-SPTWGNH-KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG  236 (459)
Q Consensus       162 ~a~~l~~~~~~~~---~~gd~Vlv~-~p~y~~~-~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~  236 (459)
                      ++++++.  ....   .+||+|+++ .|+|..+ ...++..|++++.+|+. +.++.+|++++++++++  .++++++++
T Consensus        70 ~al~~~~--~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~--~~~~~v~~~  144 (385)
T 2bkw_A           70 LGWDIFA--SNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPL-KIGESVPLELITEKLSQ--NSYGAVTVT  144 (385)
T ss_dssp             HHHHHHH--HHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCS-STTSCCCHHHHHHHHHH--SCCSEEEEE
T ss_pred             HHHHHHH--HHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecC-CCCCCCCHHHHHHHHhc--CCCCEEEEE
Confidence            9999984  3334   799999888 4566655 36778899999999983 23567999999999975  246678889


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhc--CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc-ccCCCCc
Q 012647          237 CAHNPTGIDPTPEQWEKIADVIQEK--NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERI  313 (459)
Q Consensus       237 ~p~NPTG~~~s~~~l~~i~~l~~~~--~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~Ri  313 (459)
                      +|+||||.+++   +++|+++|++|  |+++|+|++|..... ..  +       +...+.++++.|+||.+ |++|  +
T Consensus       145 ~~~nptG~~~~---l~~i~~~~~~~~~~~~li~D~a~~~~~~-~~--~-------~~~~~~d~~~~s~~K~~~~~~G--~  209 (385)
T 2bkw_A          145 HVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCSIGCE-EF--E-------FDEWGVDFALTASQKAIGAPAG--L  209 (385)
T ss_dssp             SEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTTTTTS-CC--C-------TTTTTCSEEEEESSSTTCCCSC--E
T ss_pred             ccCCCcCeEcC---HHHHHHHHHhhCCCCEEEEECccccCCc-cc--c-------ccccCceEEEecCccccccCCc--c
Confidence            99999999976   67899999999  999999999763221 11  1       12224568889999965 5677  5


Q ss_pred             ceEEEEeCChhHHH-HHH------------------HHHHhhcc--cc-ccCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012647          314 GAMNVVCSSSDLAA-RVK------------------SQLKRLAR--PM-YSNPPVHGARIVANVVGNPALFDEWKAEMEM  371 (459)
Q Consensus       314 G~~~~v~~~~~~~~-~~~------------------~~~~~~~~--~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~  371 (459)
                      ||+++   +++.++ .+.                  ........  .. ..+++..++.++...|+.   ..  ...+++
T Consensus       210 G~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~--~~~~~~  281 (385)
T 2bkw_A          210 SISLC---SSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKE---IL--EEGLHK  281 (385)
T ss_dssp             EEEEE---CHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH---HH--HHCHHH
T ss_pred             eEEEE---cHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHH---HH--HccHHH
Confidence            99866   666554 331                  11111111  11 123455554444433321   10  112567


Q ss_pred             HHHHHHHHHHHHHHHH-hhccCCCCCcccccC-----CcceeeecCCC--HHHHHHHHhcccEEEcCCC---------cE
Q 012647          372 MAGRIKNVRQKLFDSL-SAKDKSGKDWSFILR-----QIGMFSFTGLN--KAQSDNMTNKWHVYMTKDG---------RI  434 (459)
Q Consensus       372 ~~~~~~~~~~~l~~~L-~~~~g~~~~~~~~~~-----~~g~f~~~~l~--~~~~~~ll~~~gI~v~~gg---------Ri  434 (459)
                      .+++++++++++.+.| + ++|    +++..+     ..+.++|+.+.  .++.++|.+ +||.+.+|.         ||
T Consensus       282 ~~~~~~~~~~~l~~~L~~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~iRi  355 (385)
T 2bkw_A          282 RWDLHREMSDWFKDSLVN-GLQ----LTSVSRYPSNMSAHGLTAVYVADPPDVIAFLKS-HGVVIAGGIHKDIGPKYIRI  355 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TTC----CEESSCSSSTTBCSSCEEEECSCHHHHHHHHHH-TTEECBCCCCTTTGGGEEEE
T ss_pred             HHHHHHHHHHHHHHHHHH-hcC----ceecccCcccccCCceEEEecCCHHHHHHHHHH-CCeEEeCCCCcccCCCEEEE
Confidence            8899999999999999 8 775    455532     23556666542  345566654 699998861         99


Q ss_pred             E-Ec----cCChhhHHHHHHHHHHHHhhc
Q 012647          435 S-LA----GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       435 s-~~----~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      | ++    ..+++++++++++|+++++++
T Consensus       356 s~~~~~~~~~~~e~i~~~~~~l~~~~~~~  384 (385)
T 2bkw_A          356 GHMGVTACNKNLPYMKNCFDLIKLALQRK  384 (385)
T ss_dssp             CCCGGGTSSTTCTHHHHHHHHHHHHTTC-
T ss_pred             EccccccccCCHHHHHHHHHHHHHHHHhc
Confidence            9 66    248899999999999998765

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.96  E-value=5.7e-28  Score=240.06  Aligned_cols=330  Identities=12%  Similarity=0.045  Sum_probs=211.7

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCC--CCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y--~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...+||+.+.+.+..+.  .+|.+.+++.+.++... +.|  .+.....++++.+++++    +    ++++++  ++|
T Consensus        35 g~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~----~----~~~v~~--~~g  101 (395)
T 3nx3_A           35 AKKYLDFSSGIGVCALGY--NHAKFNAKIKAQVDKLL-HTSNLYYNENIAAAAKNLAKAS----A----LERVFF--TNS  101 (395)
T ss_dssp             CCEEEESSHHHHTCTTCB--SCHHHHHHHHHHHTTCS-CCCTTSBCHHHHHHHHHHHHHH----T----CSEEEE--ESS
T ss_pred             CCEEEECCCcHHhccCCC--CCHHHHHHHHHHHHhcc-ccccccCCHHHHHHHHHHHHhc----C----CCeEEE--eCC
Confidence            356899999976444444  37999999999886532 222  23344456666666664    2    478999  999


Q ss_pred             chhHHHHHHHHHHHh-----CCCCEEEEcCCCCcchHHHhhhC-------------CCCeeeeeeecCCCCCCCHHHHHH
Q 012647          160 GTGSLRLAAALIERY-----FPGAKVLISSPTWGNHKNIFNDA-------------RVPWSEYRYYDPKTVGLDFEGMIA  221 (459)
Q Consensus       160 gt~a~~l~~~~~~~~-----~~gd~Vlv~~p~y~~~~~~~~~~-------------G~~v~~v~~~~~~~~~~d~e~l~~  221 (459)
                      |+++++.+.+++...     .++|+|++++|+|.++.......             +.++..+|.       .|++++++
T Consensus       102 g~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~  174 (395)
T 3nx3_A          102 GTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY-------NDISSVEK  174 (395)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT-------TCHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC-------CCHHHHHH
Confidence            999999986655444     56899999999998764333322             234444433       27899998


Q ss_pred             HHHcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEE
Q 012647          222 DIKAAPGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (459)
Q Consensus       222 ~i~~~~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  300 (459)
                      ++++   +++++++++++|++|.+ ++++.+++|.++|++||+++|+||+|.+++..+.   ...... .+...+   +.
T Consensus       175 ~l~~---~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~---~~~~~~-~~~~~d---~~  244 (395)
T 3nx3_A          175 LVNE---KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGK---FFAYEH-AQILPD---IM  244 (395)
T ss_dssp             TCCT---TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGG-GTCCCS---EE
T ss_pred             hccC---CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCc---chhHHh-cCCCCC---EE
Confidence            8864   67777777777888776 7888899999999999999999999998864321   111111 112223   34


Q ss_pred             cCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012647          301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR  380 (459)
Q Consensus       301 S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~  380 (459)
                      ||||.++ .|+|+||+++   +++.   +.+.+.......+.+.+.+++.++...|+...-    .+.+++.++..+..+
T Consensus       245 t~sK~~~-~G~~~G~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~----~~~~~~~~~~~~~~~  313 (395)
T 3nx3_A          245 TSAKALG-CGLSVGAFVI---NQKV---ASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKE----EKILENVNKLTPYLE  313 (395)
T ss_dssp             EECGGGT-TTSCCEEEEE---CHHH---HHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHH----TTHHHHHHHHHHHHH
T ss_pred             Eeccccc-CCCceEEEEE---chhh---hhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHH
Confidence            7899999 5999999976   7773   044443332233335677777776655542100    011233333334444


Q ss_pred             HHHHHHHhhccCCCCCcccccCCcceeeecCC----CH-HHHHHHHhcccEEEcCCC----cEEEccC-ChhhHHHHHHH
Q 012647          381 QKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKDG----RISLAGL-SLAKCEYLADA  450 (459)
Q Consensus       381 ~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~gg----Ris~~~~-~~e~i~~~~~~  450 (459)
                      +.+.+.+. +++.   +....+. |.|+|+.+    +. ++.+.|++ +||.+.++|    ||+++.. +++++++++++
T Consensus       314 ~~l~~~~~-~~~~---~~~~~~~-g~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~~~iRi~~~~~~t~e~i~~~l~~  387 (395)
T 3nx3_A          314 QSLDELIN-EFDF---CKKRKGL-GFMQGLSLDKSVKVAKVIQKCQE-NALLLISCGENDLRFLPPLILQKEHIDEMSEK  387 (395)
T ss_dssp             HHHHHHHH-HCTT---EEEEEEE-TTEEEEEECTTSCHHHHHHHHHH-TTEECEEETTTEEEECCCTTCCHHHHHHHHHH
T ss_pred             HHHHHHHH-hCCC---eEEEEeE-EEEEEEEeCCcchHHHHHHHHHH-CCCEEecCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            44444444 4431   2333444 44555432    33 44566665 599999875    8875433 89999999999


Q ss_pred             HHHHHhhc
Q 012647          451 IIDSYHNV  458 (459)
Q Consensus       451 l~~~~~~~  458 (459)
                      |+++++++
T Consensus       388 l~~~l~~~  395 (395)
T 3nx3_A          388 LRKALKSF  395 (395)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHhC
Confidence            99998753

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.96  E-value=6.4e-27  Score=234.80  Aligned_cols=317  Identities=15%  Similarity=0.032  Sum_probs=219.8

Q ss_pred             eecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCC-CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHH
Q 012647           87 NLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP-IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR  165 (459)
Q Consensus        87 ~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~-~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~  165 (459)
                      +|+.|.|    ..++ |+.+.+++.+.+..+   .|++ ..+..++|+++++++..        +++++  |+||+++++
T Consensus        20 ~l~~~~p----~~~~-p~~~~~a~~~~~~~~---~y~~~~~~~~~l~~~la~~~~~--------~~v~~--~~ggt~al~   81 (424)
T 2po3_A           20 PLLVGRP----NRID-RARLYERLDRALDSQ---WLSNGGPLVREFEERVAGLAGV--------RHAVA--TCNATAGLQ   81 (424)
T ss_dssp             CEETTCC----CCCC-HHHHHHHHHHHHHHT---CCSSSCHHHHHHHHHHHHHHTS--------SEEEE--ESCHHHHHH
T ss_pred             cccccCC----CCCC-hHHHHHHHHHHHhcC---CcccCCHHHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHH
Confidence            6888887    4444 788999998888653   4766 68999999999999743        47888  999999999


Q ss_pred             HHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCC
Q 012647          166 LAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGID  245 (459)
Q Consensus       166 l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~  245 (459)
                      ++...   +.+||+|++++|+|..+...++..|++++.+|++ ++++.+|++++++++++   +++++++   +||||..
T Consensus        82 ~~l~~---l~~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~-~~~~~~d~~~l~~~i~~---~~~~v~~---~~~tG~~  151 (424)
T 2po3_A           82 LLAHA---AGLTGEVIMPSMTFAATPHALRWIGLTPVFADID-PDTGNLDPDQVAAAVTP---RTSAVVG---VHLWGRP  151 (424)
T ss_dssp             HHHHH---HTCCSEEEEESSSCTHHHHHHHHTTCEEEEECBC-TTTSSBCHHHHGGGCCT---TEEEEEE---ECGGGCC
T ss_pred             HHHHH---cCCCCEEEECCCccHHHHHHHHHcCCEEEEEecC-CCcCCcCHHHHHHhhCc---CCcEEEE---ECCCCCc
Confidence            98433   3588999999999999999999999999999985 34678999999998865   6777776   3599997


Q ss_pred             CCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChh
Q 012647          246 PTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (459)
Q Consensus       246 ~s~~~l~~i~~l~~~~~~~ii~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~  324 (459)
                         +++++|+++|+++|+++|+|++|. ++.+++   .  .+    ....+ +++.||||..+++|+|+||+++  ++++
T Consensus       152 ---~~l~~i~~la~~~~~~li~Dea~~~g~~~~~---~--~~----~~~~d-i~~~S~sk~K~l~~~~~G~~v~--~~~~  216 (424)
T 2po3_A          152 ---CAADQLRKVADEHGLRLYFDAAHALGCAVDG---R--PA----GSLGD-AEVFSFHATKAVNAFEGGAVVT--DDAD  216 (424)
T ss_dssp             ---CCHHHHHHHHHHTTCEEEEECTTCTTCEETT---E--ET----TSSSS-EEEEECCTTSSSCCSSCEEEEE--SCHH
T ss_pred             ---CCHHHHHHHHHHcCCEEEEECccccCCeECC---e--ec----ccccC-EEEEeCCCCCCccCCCCeEEEe--CCHH
Confidence               788899999999999999999988 465432   1  11    11123 8899999666777799999854  3377


Q ss_pred             HHHHHHHHHHhhcccccc-----CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccc
Q 012647          325 LAARVKSQLKRLARPMYS-----NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF  399 (459)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~  399 (459)
                      +++.+...........+.     ....+.+..+...+.  .     .+.+++..++.+++++++.+.|+ +++   ++.+
T Consensus       217 l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~--~-----~~~~~~~~~~~~~~~~~l~~~L~-~~~---g~~~  285 (424)
T 2po3_A          217 LAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLT--S-----LDAFPEVIDRNRRNHAAYREHLA-DLP---GVLV  285 (424)
T ss_dssp             HHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHH--H-----HHHHHHHHHHHHHHHHHHHHHTC-SCT---TEEE
T ss_pred             HHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHH--H-----HHHHHHHHHHHHHHHHHHHHHhc-cCC---Cccc
Confidence            555554432211100000     000111112211111  0     12356677777788888888888 762   1555


Q ss_pred             cc-CCcc---eeee-c-------CCCHHHHHHHHhcccEEEcCC--------------------C--c-----EEEc---
Q 012647          400 IL-RQIG---MFSF-T-------GLNKAQSDNMTNKWHVYMTKD--------------------G--R-----ISLA---  437 (459)
Q Consensus       400 ~~-~~~g---~f~~-~-------~l~~~~~~~ll~~~gI~v~~g--------------------g--R-----is~~---  437 (459)
                      .. +.++   +++| +       +.+.+.+...+.++||.+.+.                    +  |     |+++   
T Consensus       286 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~  365 (424)
T 2po3_A          286 ADHDRHGLNNHQYVIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGT  365 (424)
T ss_dssp             CCGGGGSCCCCCCEEEEECHHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCST
T ss_pred             cCCCCCCccccEEEEEEECCccchhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCC
Confidence            54 3333   2332 2       345555554555679998752                    0  4     7764   


Q ss_pred             cCChhhHHHHHHHHHHHHhh
Q 012647          438 GLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       438 ~~~~e~i~~~~~~l~~~~~~  457 (459)
                      ..+++++++++++|++++++
T Consensus       366 ~~t~e~i~~~~~~L~~~~~~  385 (424)
T 2po3_A          366 AIGDDDIRRVADLLRLCATR  385 (424)
T ss_dssp             TCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhh
Confidence            34899999999999998765

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.96  E-value=3.1e-27  Score=239.55  Aligned_cols=349  Identities=13%  Similarity=0.042  Sum_probs=220.5

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...+||+.|.+....+..  +|.|.+++.+.++... +.|....+..++++++++++....+  ...++|++  |+||+
T Consensus        50 G~~~lD~~~~~~~~~lG~~--~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~gGs  122 (460)
T 3gju_A           50 GRKSIDAFAGLYCVNVGYG--RQKIADAIATQAKNLA-YYHAYVGHGTEASITLAKMIIDRAP--KGMSRVYF--GLSGS  122 (460)
T ss_dssp             CCEEEETTHHHHTCTTCBC--CHHHHHHHHHHHHHHS-CCCCCTTCCCHHHHHHHHHHHHHSC--TTEEEEEE--ESSHH
T ss_pred             CCEEEECCcchhhccCCCC--CHHHHHHHHHHHHhcc-ccccccccCCHHHHHHHHHHHhhCC--CCcCEEEE--eCchH
Confidence            4578999998654444543  7899999988775422 2333333444455555555443322  23578999  99999


Q ss_pred             hHHHHHHHHHHHh------CCCCEEEEcCCCCcchHHHhhhC-------------CCCeeeeeeec---CCCCCCC----
Q 012647          162 GSLRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDA-------------RVPWSEYRYYD---PKTVGLD----  215 (459)
Q Consensus       162 ~a~~l~~~~~~~~------~~gd~Vlv~~p~y~~~~~~~~~~-------------G~~v~~v~~~~---~~~~~~d----  215 (459)
                      ++++.+.+++...      .++++|++.+|+|.++.......             +..+..+|...   .++++.+    
T Consensus       123 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~  202 (460)
T 3gju_A          123 DANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQF  202 (460)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHH
Confidence            9999997665433      35699999999998765443322             12344444310   0222334    


Q ss_pred             ----HHHHHHHHHcC-CCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH
Q 012647          216 ----FEGMIADIKAA-PGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF  289 (459)
Q Consensus       216 ----~e~l~~~i~~~-~~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~  289 (459)
                          +++|+++++.. ++++++++++.++|++|. +++++.+++|.++|++||+++|+||+|.+++..+   ....... 
T Consensus       203 ~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g---~~~~~~~-  278 (460)
T 3gju_A          203 SQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLG---TMFGSDH-  278 (460)
T ss_dssp             HHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS---SSCHHHH-
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc---ccchHhh-
Confidence                68888888632 135677777777888887 7788889999999999999999999999886532   1222222 


Q ss_pred             HhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHH---HHhhccccccCCchHHHHHHHHHhCChhhHHHH
Q 012647          290 ATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQ---LKRLARPMYSNPPVHGARIVANVVGNPALFDEW  365 (459)
Q Consensus       290 ~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~  365 (459)
                      .+..++++   +|||.++ .| +|+||+++   +++.++.+...   ........+.+.+.+++.++...|+...-    
T Consensus       279 ~~~~pdi~---t~sK~l~-gG~~~lg~v~~---~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~----  347 (460)
T 3gju_A          279 YGIKPDLI---TIAKGLT-SAYAPLSGVIV---ADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDE----  347 (460)
T ss_dssp             HTCCCSEE---EECGGGT-TTSSCCEEEEE---EHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHH----
T ss_pred             cCCCCCee---eeehhhc-CCCCCeEEEEE---CHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHh----
Confidence            23333433   7899998 46 89999876   78855555422   11222223336667777777666542110    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC----------------CHHHHHHHHhcccEEEc
Q 012647          366 KAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----------------NKAQSDNMTNKWHVYMT  429 (459)
Q Consensus       366 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l----------------~~~~~~~ll~~~gI~v~  429 (459)
                      .+.+++.++..+..++.|.+.+. +++.   +..+.+.|.++ ++.+                ..++.+.+++ +||.+.
T Consensus       348 ~~~~~~~~~~~~~~~~~l~~~l~-~~~~---~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~  421 (460)
T 3gju_A          348 MDLVTNAGETGAYFRAELAKAVG-GHKN---VGEVRGDGMLA-AVEFVADKDDRVFFDASQKIGPQVATALAA-SGVIGR  421 (460)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHT-TSTT---EEEEEEETTEE-EEEECSBTTTTBCCCGGGCHHHHHHHHHHH-TTEECE
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHh-cCCC---eEEEeeeeEEE-EEEEccCccccccccchHHHHHHHHHHHHH-CCeEEe
Confidence            11245556666666666766666 5532   34445555443 3211                1234556666 599999


Q ss_pred             CCC-----cEEEc-cCChhhHHHHHHHHHHHHhhc
Q 012647          430 KDG-----RISLA-GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       430 ~gg-----Ris~~-~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      |+|     ||+.. ..+++++++++++|+++++++
T Consensus       422 ~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  456 (460)
T 3gju_A          422 AMPQGDILGFAPPLCLTREQADIVVSKTADAVKSV  456 (460)
T ss_dssp             ECSSSCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            864     88743 238999999999999998764

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.96  E-value=2.4e-27  Score=237.61  Aligned_cols=327  Identities=14%  Similarity=0.074  Sum_probs=216.3

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCC--CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...+||+.|...+..++  .+|.+.+++.+.++....  ..| +.....++++.+++++    +    .++|++  |+|
T Consensus        56 g~~~lD~~~~~~~~~lG~--~~p~v~~ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~----g----~~~v~~--~~g  122 (420)
T 2pb2_A           56 GKEYIDFAGGIAVTALGH--CHPALVEALKSQGETLWHTSNVF-TNEPALRLGRKLIDAT----F----AERVLF--MNS  122 (420)
T ss_dssp             CCEEEESSHHHHTCTTCB--TCHHHHHHHHHHHTTCCCCCTTS-CCHHHHHHHHHHHHHS----S----CSEEEE--ESS
T ss_pred             CCEEEEccccccccccCC--CCHHHHHHHHHHHHhcccccCcc-CCHHHHHHHHHHHhhC----C----CCeEEE--eCC
Confidence            356889998854233344  278999999988864211  113 3344456666666663    2    478999  999


Q ss_pred             chhHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchH-HHhhhCCCC------------eeeeeeecCCCCCCCHHHHH
Q 012647          160 GTGSLRLAAALIERYF-----PG-AKVLISSPTWGNHK-NIFNDARVP------------WSEYRYYDPKTVGLDFEGMI  220 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~-----~g-d~Vlv~~p~y~~~~-~~~~~~G~~------------v~~v~~~~~~~~~~d~e~l~  220 (459)
                      |++|++++.+++....     +| ++|++++|+|..+. ..+...|.+            +..+|.       .|+++++
T Consensus       123 gteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~le  195 (420)
T 2pb2_A          123 GTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF-------NDLHAVK  195 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-------TCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-------CCHHHHH
Confidence            9999999866543221     66 59999999997664 344445543            333332       3899999


Q ss_pred             HHHHcCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012647          221 ADIKAAPGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (459)
Q Consensus       221 ~~i~~~~~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~  299 (459)
                      +++++   +++++++++++||+|. +++.+++++|.++|++||+++|+||+|.++++.+   ....... .+..++++  
T Consensus       196 ~~i~~---~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g---~~~~~~~-~~~~~dii--  266 (420)
T 2pb2_A          196 AVMDD---HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTG---DLFAYMH-YGVTPDIL--  266 (420)
T ss_dssp             HHCCT---TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS---SSSHHHH-HTCCCSEE--
T ss_pred             HHhcc---CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCC---cHHHHHh-cCCCCCeE--
Confidence            99875   7888888888998884 6999999999999999999999999998876542   1222222 23334544  


Q ss_pred             EcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012647          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV  379 (459)
Q Consensus       300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~  379 (459)
                       ||||.++ +|+|+||+++   ++++++.+    .......+.+.+.+++.++...|+...      +  ++..++++++
T Consensus       267 -t~sK~l~-~G~~iG~~~~---~~~l~~~l----~~~~~~~t~~~~~~~~aa~~a~L~~~~------~--~~~~~~~~~~  329 (420)
T 2pb2_A          267 -TSAKALG-GGFPVSAMLT---TQEIASAF----HVGSHGSTYGGNPLACAVAGAAFDIIN------T--PEVLQGIHTK  329 (420)
T ss_dssp             -EECGGGG-TTSCCEEEEE---CHHHHTTC----C----CCEECCCHHHHHHHHHHHHHHS------S--HHHHHHHHHH
T ss_pred             -Eeccccc-CCCceEEEEE---hHHHHHhh----cCCCcCcccCcCHHHHHHHHHHHHHHH------h--ccHHHHHHHH
Confidence             7899999 8999999976   66643332    221122233566777766655543211      0  2456677777


Q ss_pred             HHHHHHHHhhcc--CCCCCcccccCCcceeeecCC------CH-HHHHHHHhcccEEEcCCC----cEEEc-cCChhhHH
Q 012647          380 RQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGL------NK-AQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCE  445 (459)
Q Consensus       380 ~~~l~~~L~~~~--g~~~~~~~~~~~~g~f~~~~l------~~-~~~~~ll~~~gI~v~~gg----Ris~~-~~~~e~i~  445 (459)
                      ++++.+.|+ ++  ++|. +....+.| .|+|+.+      +. ++.+.|++ +||.+.++|    ||+++ ..++++++
T Consensus       330 ~~~l~~~L~-~~~~~~~~-~~~~~~~g-~~~~v~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~~~~iRl~~~~~~t~eei~  405 (420)
T 2pb2_A          330 RQQFVQHLQ-AIDEQFDI-FSDIRGMG-LLIGAELKPKYKGRARDFLYAGAE-AGVMVLNAGADVMRFAPSLVVEEADIH  405 (420)
T ss_dssp             HHHHHHHHH-HHHHHHCC-EEEEEEET-TEEEEEECGGGTTCHHHHHHHHHH-TTEECEESSTTEEEECCCTTCCHHHHH
T ss_pred             HHHHHHHHH-HHHhcCCC-eEEEEecc-eEEEEEECCCchHHHHHHHHHHHH-CCCEEEeCCCCEEEEECCCCCCHHHHH
Confidence            888888887 54  2211 22234444 4444432      23 45666666 699999875    88854 23899999


Q ss_pred             HHHHHHHHHHhhc
Q 012647          446 YLADAIIDSYHNV  458 (459)
Q Consensus       446 ~~~~~l~~~~~~~  458 (459)
                      +++++|+++++++
T Consensus       406 ~~~~~l~~~l~~~  418 (420)
T 2pb2_A          406 EGMQRFAQAVGKV  418 (420)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998764

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.96  E-value=2e-27  Score=236.50  Aligned_cols=316  Identities=16%  Similarity=0.087  Sum_probs=219.4

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      .+.+||+.|.+    ..   ++.+.+++.+.+..   ..|.+..+..++|+++++++..        +++++  +.+|++
T Consensus        30 ~~~id~~~~~~----~~---~~~v~~a~~~~~~~---~~y~~~~~~~~l~~~la~~~~~--------~~~v~--~~~Gt~   89 (399)
T 2oga_A           30 VPFLDLKAAYE----EL---RAETDAAIARVLDS---GRYLLGPELEGFEAEFAAYCET--------DHAVG--VNSGMD   89 (399)
T ss_dssp             BCSCCHHHHHH----HT---HHHHHHHHHHHHHH---TCCSSSHHHHHHHHHHHHHTTS--------SEEEE--ESCHHH
T ss_pred             CcccccCcCCC----CC---CHHHHHHHHHHHhc---CCCCCchhHHHHHHHHHHHHCC--------CeEEE--ecCHHH
Confidence            36789999886    22   48899999888764   3576778899999999999643        24566  788899


Q ss_pred             HHHHHHHHHHH-hCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          163 SLRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       163 a~~l~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      ++.++  +... +.+||+|++++|+|..+...++..|++++.+|++ ++++.+|++.+++++++   ++++++   ++||
T Consensus        90 a~~~~--l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~i~~---~~~~v~---~~n~  160 (399)
T 2oga_A           90 ALQLA--LRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPH-EDHPTLDPLLVEKAITP---RTRALL---PVHL  160 (399)
T ss_dssp             HHHHH--HHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBC-SSSSSBCHHHHHHHCCT---TEEEEC---CBCG
T ss_pred             HHHHH--HHHhCCCCcCEEEECCCccHHHHHHHHHCCCEEEEEecC-CCCCCcCHHHHHHhcCC---CCeEEE---EeCC
Confidence            99998  3333 5699999999999999999999999999999985 33578999999999875   677766   5799


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcC--CcCcccCCCCcceEEEE
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY--SKNLGLYAERIGAMNVV  319 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~RiG~~~~v  319 (459)
                      ||.+.   ++++|.++|+++|+++|+||+|..+...+  ...  +    ... .++++.|+  ||.++++| |.||++  
T Consensus       161 tG~~~---~l~~i~~l~~~~~~~li~Dea~~~g~~~~--~~~--~----~~~-~di~~~S~~~sK~~~~~G-~~g~~~--  225 (399)
T 2oga_A          161 YGHPA---DMDALRELADRHGLHIVEDAAQAHGARYR--GRR--I----GAG-SSVAAFSFYPGKNLGCFG-DGGAVV--  225 (399)
T ss_dssp             GGCCC---CHHHHHHHHHHHTCEECEECTTCTTCEET--TEE--T----TCT-TCEEEEECCTTSSSCCSS-CCEEEE--
T ss_pred             cCCcc---CHHHHHHHHHHcCCEEEEECcccccCccC--Cee--c----ccc-cCEEEEeCCCCccCCcCC-ceEEEE--
Confidence            99984   57889999999999999999987553211  111  1    111 25888898  79999889 999984  


Q ss_pred             eCChhHHHHHHHHHHhhcc--------ccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          320 CSSSDLAARVKSQLKRLAR--------PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                      +.+++..+.+.........        ......+.+.+.++...++.          +++..++.+++++++.+.|+ ++
T Consensus       226 ~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~----------~~~~~~~~~~~~~~l~~~L~-~~  294 (399)
T 2oga_A          226 TGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAH----------LDSWNGRRSALAAEYLSGLA-GL  294 (399)
T ss_dssp             ESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHT----------HHHHHHHHHHHHHHHHHHTT-TC
T ss_pred             eCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhc-cC
Confidence            4457755554432211000        00112344444444333321          23445566667788888888 76


Q ss_pred             -CCCCCcccc-cCCcceeeec-----CCCHH-HHHHHHhcccEEEcCC-----------------------------C--
Q 012647          392 -KSGKDWSFI-LRQIGMFSFT-----GLNKA-QSDNMTNKWHVYMTKD-----------------------------G--  432 (459)
Q Consensus       392 -g~~~~~~~~-~~~~g~f~~~-----~l~~~-~~~~ll~~~gI~v~~g-----------------------------g--  432 (459)
                       |    +++. .+.++.++|.     ..+.+ +.+.|.+ +||.+.++                             +  
T Consensus       295 ~g----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l  369 (399)
T 2oga_A          295 PG----IGLPVTAPDTDPVWHLFTVRTERRDELRSHLDA-RGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVL  369 (399)
T ss_dssp             TT----CBCCCCCTTEECCCSSEEEECSSHHHHHHHHHH-TTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEE
T ss_pred             CC----ccccCCCCCCcceeEEEEEECCCHHHHHHHHHH-CCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEE
Confidence             3    3433 2444555542     22444 4555555 69988652                             2  


Q ss_pred             cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          433 RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       433 Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                      ||++.. .+++++++++++|+++++++
T Consensus       370 Ri~~~~~~t~edi~~~~~~l~~~~~~l  396 (399)
T 2oga_A          370 SLPIGPHLERPQALRVIDAVREWAERV  396 (399)
T ss_dssp             EECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred             EccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            666653 38999999999999998875

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.96  E-value=1.6e-27  Score=237.58  Aligned_cols=324  Identities=14%  Similarity=0.129  Sum_probs=214.3

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCc---ccHH--HHH-----HHHHHHhcCCCCccccCce
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIE---GLAA--FNK-----VTAELLFGADNSVLKEQRV  152 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~---g~~~--lr~-----aia~~l~~~~~~~~~~~~i  152 (459)
                      .+.|+|..|.+      +. ++.+.+++.+.+.......|+...   |.+.  +++     .+++++...      +++|
T Consensus        23 ~~~i~~~~~~~------~~-~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~------~~~i   89 (407)
T 2dkj_A           23 REGLELIASEN------FV-SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAA------WANV   89 (407)
T ss_dssp             HTSEECCTTCC------CC-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS------EEEC
T ss_pred             hcceeeccCCC------CC-CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCC------cceE
Confidence            46899998875      22 889999999887542234564332   4442  333     666665321      4456


Q ss_pred             EEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcch---HHHhhhCCCCeeeeeee-cCCCCCCCHHHHHHHHHcCCC
Q 012647          153 ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH---KNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAAPG  228 (459)
Q Consensus       153 ~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~---~~~~~~~G~~v~~v~~~-~~~~~~~d~e~l~~~i~~~~~  228 (459)
                      ++  ++ |++++.++.+.  .+.+||+|++++|+|..+   ...++..|.++..+++. +++++.+|++.+++++++  .
T Consensus        90 ~~--~s-Gt~a~~~~~~~--~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~  162 (407)
T 2dkj_A           90 QP--HS-GSQANMAVYMA--LMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALE--H  162 (407)
T ss_dssp             CC--SS-HHHHHHHHHHH--HCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHH--H
T ss_pred             Ee--cc-hHHHHHHHHHH--hcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhh--c
Confidence            55  55 56699988443  367999999999999888   34556667755556553 234678999999999974  1


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCC-CCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc
Q 012647          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG-FASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (459)
Q Consensus       229 ~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (459)
                      +++++++++|+||  ...   ++++|.++|++||+++|+||+|.. +.+.+...  ..    ..  ..+++++|+||.  
T Consensus       163 ~~~~v~~~~p~~~--~~~---~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~--~~----~~--~~di~~~s~sK~--  227 (407)
T 2dkj_A          163 RPKVIVAGASAYP--RFW---DFKAFREIADEVGAYLVVDMAHFAGLVAAGLHP--NP----LP--YAHVVTSTTHKT--  227 (407)
T ss_dssp             CCSEEEECCSSCC--SCC---CHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSC--CC----TT--TCSEEEEESSGG--
T ss_pred             CCeEEEEeccccC--CCC---CHHHHHHHHHHcCCEEEEEccccccccccCccC--Cc----cc--cccEEEEecccc--
Confidence            4566777999998  443   488999999999999999999886 43222110  00    11  257889999994  


Q ss_pred             cCCCCcceEEEEeCC-hhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          308 LYAERIGAMNVVCSS-SDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDS  386 (459)
Q Consensus       308 ~~G~RiG~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  386 (459)
                      ++|+|+||+++   + ++..+.+......   +...+++.....++...|...  .   .+.+++.+++++++++++.+.
T Consensus       228 l~g~~~G~~~~---~~~~~~~~l~~~~~~---~~~~~~~~~~~~a~~~al~~~--~---~~~~~~~~~~~~~~~~~l~~~  296 (407)
T 2dkj_A          228 LRGPRGGLILS---NDPELGKRIDKLIFP---GIQGGPLEHVIAGKAVAFFEA--L---QPEFKEYSRLVVENAKRLAEE  296 (407)
T ss_dssp             GCCCSCEEEEE---SCHHHHHHHHHHHTT---TTCSSCCHHHHHHHHHHHHHH--H---SHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCceEEEE---CCHHHHHHHHhhhcc---cccCCCcHHHHHHHHHHHHHH--H---HhhHHHHHHHHHHHHHHHHHH
Confidence            46899999965   5 6755554433211   222233332222333333211  0   134678889999999999999


Q ss_pred             HhhccCCCCCccccc-CCcceeeecCC-----CHHHHHHHHhcccEEEcCC------------C--cEEEcc-----CCh
Q 012647          387 LSAKDKSGKDWSFIL-RQIGMFSFTGL-----NKAQSDNMTNKWHVYMTKD------------G--RISLAG-----LSL  441 (459)
Q Consensus       387 L~~~~g~~~~~~~~~-~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~g------------g--Ris~~~-----~~~  441 (459)
                      |+ ++|    +++.. +..++|+|+.+     +.+.+...+.++||.+.+|            +  ||+++.     .++
T Consensus       297 L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~  371 (407)
T 2dkj_A          297 LA-RRG----YRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTP  371 (407)
T ss_dssp             HH-HTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCG
T ss_pred             HH-hCC----ceeecCCCCceEEEEECcccCCCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCH
Confidence            99 776    45554 34566777643     4444444445579998864            1  999863     489


Q ss_pred             hhHHHHHHHHHHHHhh
Q 012647          442 AKCEYLADAIIDSYHN  457 (459)
Q Consensus       442 e~i~~~~~~l~~~~~~  457 (459)
                      +++++++++|++++++
T Consensus       372 ~~i~~~~~~l~~~~~~  387 (407)
T 2dkj_A          372 EEMPLVAELIDRALLE  387 (407)
T ss_dssp             GGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999998865

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.96  E-value=8.5e-28  Score=243.09  Aligned_cols=342  Identities=13%  Similarity=-0.004  Sum_probs=207.2

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...+||..|.+....++.  +|.|.+++.+.++..  ..|....+..+.+.++++++....+.. .+++|++  |+||+
T Consensus        63 G~~ylD~~~~~~~~~lGh~--~p~v~~A~~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~--~~sGs  135 (453)
T 4ffc_A           63 GNSFIDLGAGIAVTTVGAS--HPAVAAAIADQATHF--THTCFMVTPYEQYVQVAELLNALTPGD-HDKRTAL--FNSGA  135 (453)
T ss_dssp             SCEEEESSHHHHTCTTCTT--CHHHHHHHHHHHHHC--SCCTTTTSCCHHHHHHHHHHHHHSSCS-SCEEEEE--ESSHH
T ss_pred             CCEEEEcCCCcccCcCCCC--CHHHHHHHHHHHHhc--cccccCcCCCHHHHHHHHHHHHhCCCC-CCcEEEE--eCcHH
Confidence            3578999998764444543  789999998887653  223333333344444444443322211 1468999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCC--------------CCeeeeeeecC--CCCCCC--------HH
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDAR--------------VPWSEYRYYDP--KTVGLD--------FE  217 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G--------------~~v~~v~~~~~--~~~~~d--------~e  217 (459)
                      +|++.+.++......+++|++.+|+|.++.......+              ..+..+|+...  +.++.+        ++
T Consensus       136 eA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  215 (453)
T 4ffc_A          136 EAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAIS  215 (453)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHH
Confidence            9999997665433456899999999987654433221              13445554211  122333        34


Q ss_pred             HHHHHHHcCCCCcEEEEeCCCCCCCC--CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012647          218 GMIADIKAAPGGSFILLHGCAHNPTG--IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME  295 (459)
Q Consensus       218 ~l~~~i~~~~~~~~~ii~~~p~NPTG--~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~  295 (459)
                      .+++.+..   .+..++++.|+|++|  ..++++.+++|.++|++||+++|+||+|.+++..+   ..+.... .+..++
T Consensus       216 ~l~~~i~~---~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g---~~~a~~~-~~~~pd  288 (453)
T 4ffc_A          216 RIETQIGA---QSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTG---AWFASEH-EGIVPD  288 (453)
T ss_dssp             HHHHHTCG---GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSTHHH-HTCCCS
T ss_pred             HHHHhcCC---CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCccc---ccchhhh-cCCCcc
Confidence            44444432   345555567888887  45578889999999999999999999999886542   1122222 222233


Q ss_pred             EEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012647          296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR  375 (459)
Q Consensus       296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~  375 (459)
                         +.+|||.++. |+|+||+++   +++    +.+.+.......+.+.+.++|.++...|+...-    .+.+++.++.
T Consensus       289 ---i~t~sK~~~~-G~~~G~~~~---~~~----i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~  353 (453)
T 4ffc_A          289 ---IVTMAKGIAG-GMPLSAVTG---RAE----LMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRE----LDLPARARAI  353 (453)
T ss_dssp             ---EEEECGGGGT-TSSCEEEEE---EHH----HHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHH----TTHHHHHHHH
T ss_pred             ---hHhhhhhhcC-CcCeEEEEE---CHH----HHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhh----hhHHHHHHHH
Confidence               3479999995 999999866   777    444444333344446777777777666542110    0112333333


Q ss_pred             HHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC------------CHHHHHHHHhcccEEEcCCC------cEEEc
Q 012647          376 IKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL------------NKAQSDNMTNKWHVYMTKDG------RISLA  437 (459)
Q Consensus       376 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l------------~~~~~~~ll~~~gI~v~~gg------Ris~~  437 (459)
                      .+..++.|.+.+. +++.   +..+.+. |.|+|+.+            ..++.+.+++ +||.+.|+|      ||+++
T Consensus       354 ~~~l~~~l~~~~~-~~~~---~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~~iRi~~~  427 (453)
T 4ffc_A          354 EASVTSRLSALAE-EVDI---IGEVRGR-GAMLAIEIVKPGTLEPDAALTKSIAAEALS-QGVLILTCGTFGNVIRLLPP  427 (453)
T ss_dssp             HHHHHHHHHHHHH-HCSS---EEEEEEE-TTEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECCEECTTSCEEEECCC
T ss_pred             HHHHHHHHHHHHh-hCCC---eEEEEee-ceEEEEEEecCcccCCCHHHHHHHHHHHHh-CCCEEecCCCCCCEEEEECC
Confidence            3333444444444 4431   2333444 44554432            1234556666 599999865      77655


Q ss_pred             cC-ChhhHHHHHHHHHHHHhhc
Q 012647          438 GL-SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       438 ~~-~~e~i~~~~~~l~~~~~~~  458 (459)
                      .. +++++++++++|.++++++
T Consensus       428 ~~~t~e~i~~~l~~l~~~l~~~  449 (453)
T 4ffc_A          428 LVIGDDLLDEGITALSDIIRAK  449 (453)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Confidence            33 8999999999999998764

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.96  E-value=1.1e-27  Score=240.95  Aligned_cols=340  Identities=11%  Similarity=0.012  Sum_probs=211.7

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC--CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      ...+|+..|.+...-++  .+|.|.+++.+.++...  ...| +.....++++.+++++.    .  .+++|++  |+||
T Consensus        43 ~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~----~--~~~~v~~--~~gg  111 (433)
T 1zod_A           43 RAILDFTSGQMSAVLGH--CHPEIVSVIGEYAGKLDHLFSEM-LSRPVVDLATRLANITP----P--GLDRALL--LSTG  111 (433)
T ss_dssp             CEEEETTHHHHTCTTCB--TCHHHHHHHHHHHHHCCCCCTTC-CCHHHHHHHHHHHHHSC----T--TCCEEEE--ESCH
T ss_pred             CEEEEcccchhccccCC--CCHHHHHHHHHHHHhCccccccc-CCHHHHHHHHHHHHhCC----C--CcCEEEE--eCch
Confidence            45789888875222233  27899999988876431  1233 23344566666666632    1  2688999  9999


Q ss_pred             hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhC------------CCCeeeeeeecC--CCC--------CCCHHH
Q 012647          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA------------RVPWSEYRYYDP--KTV--------GLDFEG  218 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~------------G~~v~~v~~~~~--~~~--------~~d~e~  218 (459)
                      +++++++.+++..+..+|+|++.+|+|.++.......            ...+..++....  ..+        .+|++.
T Consensus       112 ~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~  191 (433)
T 1zod_A          112 AESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDY  191 (433)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHH
Confidence            9999998655432334689999999997654332211            113334433111  011        246999


Q ss_pred             HHHHHHcC-CCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeE
Q 012647          219 MIADIKAA-PGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL  296 (459)
Q Consensus       219 l~~~i~~~-~~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~  296 (459)
                      +++.+++. ++++++++++..+||||. +++++.+++|.++|++||+++|+||+|.+++..+   ....+.. ....+++
T Consensus       192 le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g---~~~~~~~-~~~~~di  267 (433)
T 1zod_A          192 AFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTG---TMFACQR-DGVTPDI  267 (433)
T ss_dssp             HHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSTHHH-HTCCCSE
T ss_pred             HHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCc---hHhHHhh-cCCCCCE
Confidence            99998742 125666665444689996 6789999999999999999999999999886432   1112222 2223343


Q ss_pred             EEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012647          297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI  376 (459)
Q Consensus       297 i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~  376 (459)
                         .||||.++. |+|+||+++   +++.++.+...  ......+.+.+.+++.++...|+..      .+  +...+++
T Consensus       268 ---~s~sK~~~~-G~~ig~~~~---~~~~~~~~~~~--~~~~~~t~~~~~~~~~a~~aal~~~------~~--~~~~~~~  330 (433)
T 1zod_A          268 ---LTLSKTLGA-GLPLAAIVT---SAAIEERAHEL--GYLFYTTHVSDPLPAAVGLRVLDVV------QR--DGLVARA  330 (433)
T ss_dssp             ---EEECHHHHT-TSSCEEEEE---CHHHHHHHHHT--TCCCCCTTTTCHHHHHHHHHHHHHH------HH--TTHHHHH
T ss_pred             ---EEecccccC-CCCeeEEEE---hHHHHHhhccC--CCCCCCCCCcCHHHHHHHHHHHHHH------Hh--CCHHHHH
Confidence               389999995 999999976   77755444321  1111133355677776665554311      00  2344566


Q ss_pred             HHHHHHHHHHHhhcc--CCCCCcccccCCcceeeecCC-------------CHHHHHHHHhcccEEEcCC------C--c
Q 012647          377 KNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGL-------------NKAQSDNMTNKWHVYMTKD------G--R  433 (459)
Q Consensus       377 ~~~~~~l~~~L~~~~--g~~~~~~~~~~~~g~f~~~~l-------------~~~~~~~ll~~~gI~v~~g------g--R  433 (459)
                      +++++++.+.|+ ++  ..|. +....+.| .|+|+.+             ..++.+.|++ +||.+.|+      +  |
T Consensus       331 ~~~~~~l~~~l~-~l~~~~~~-~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~~~~lR  406 (433)
T 1zod_A          331 NVMGDRLRRGLL-DLMERFDC-IGDVRGRG-LLLGVEIVKDRRTKEPADGLGAKITRECMN-LGLSMNIVQLPGMGGVFR  406 (433)
T ss_dssp             HHHHHHHHHHHH-HHHHHCTT-EEEEEEET-TEEEEEEEEETTTTEECTTHHHHHHHHHHH-TTEECCEECCTTSCCEEE
T ss_pred             HHHHHHHHHHHH-HHHHhCCC-eEEEEEEE-EEEEEEEecCccccCCChHHHHHHHHHHHH-CCCeEeccCCCCCCCEEE
Confidence            666777777776 53  1111 23344444 4555432             1345666765 69999875      3  7


Q ss_pred             EEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          434 ISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       434 is~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                      |+++. .+++++++++++|+++++++
T Consensus       407 i~~~~~~t~~~i~~~l~~l~~~l~~~  432 (433)
T 1zod_A          407 IAPPLTVSEDEIDLGLSLLGQAIERA  432 (433)
T ss_dssp             ECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EECCcCCCHHHHHHHHHHHHHHHHHh
Confidence            86542 38999999999999998764

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.95  E-value=7.9e-27  Score=236.52  Aligned_cols=349  Identities=11%  Similarity=-0.012  Sum_probs=214.8

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...+||+.|.+....+..  +|.|.+++.+.++... +.|....+..+.++++++++....+  ...++|++  ++||+
T Consensus        49 g~~ylD~~~~~~~~~lG~~--~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~ggs  121 (459)
T 4a6r_A           49 GNKIIDGMAGLWCVNVGYG--RKDFAEAARRQMEELP-FYNTFFKTTHPAVVELSSLLAEVTP--AGFDRVFY--TNSGS  121 (459)
T ss_dssp             CCEEEETTHHHHTCTTCBC--CHHHHHHHHHHHHHCS-CCCTTSSSCCHHHHHHHHHHHHHSC--TTCCEEEE--ESSHH
T ss_pred             CCEEEECCCchhcccCCCC--CHHHHHHHHHHHHhcc-ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCchH
Confidence            3568999998764444543  7899999998886532 2333333344555555555544332  23578999  99999


Q ss_pred             hHHHHHHHHHHHh------CCCCEEEEcCCCCcchHHHhhhCCC-------------Ceeeeeeec--C-CCCCCC----
Q 012647          162 GSLRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDARV-------------PWSEYRYYD--P-KTVGLD----  215 (459)
Q Consensus       162 ~a~~l~~~~~~~~------~~gd~Vlv~~p~y~~~~~~~~~~G~-------------~v~~v~~~~--~-~~~~~d----  215 (459)
                      ++++.+.+++...      .++++|++.+|+|.++.......+.             .+..++...  . ..+ .|    
T Consensus       122 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~  200 (459)
T 4a6r_A          122 ESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEF  200 (459)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHH
Confidence            9999997665433      2579999999999977654443322             223333210  0 112 45    


Q ss_pred             ----HHHHHHHHHcCC-CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH
Q 012647          216 ----FEGMIADIKAAP-GGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF  289 (459)
Q Consensus       216 ----~e~l~~~i~~~~-~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~  289 (459)
                          +++|++.++... ++++++++..++|++|. +++++.+++|.++|++||+++|+||+|.+++..+   ....... 
T Consensus       201 ~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G---~~~~~~~-  276 (459)
T 4a6r_A          201 GVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTG---EWFGHQH-  276 (459)
T ss_dssp             HHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS---SSSHHHH-
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc---ccchHhh-
Confidence                788888887421 24566665555566665 5589999999999999999999999999887543   1222222 


Q ss_pred             HhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012647          290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEM  369 (459)
Q Consensus       290 ~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~  369 (459)
                      .+..++++   +|||.++..|+|+||+++   +++.++.+... .......+.+.+.+++.++...|+...-    .+.+
T Consensus       277 ~~~~pdi~---t~sK~l~gg~~~lg~v~~---~~~i~~~~~~~-~~~~~~~t~~~~~~~~aaa~aal~~~~~----~~~~  345 (459)
T 4a6r_A          277 FGFQPDLF---TAAKGLSSGYLPIGAVFV---GKRVAEGLIAG-GDFNHGFTYSGHPVCAAVAHANVAALRD----EGIV  345 (459)
T ss_dssp             HTCCCSEE---EECGGGGTTSSCCEEEEE---CHHHHHHHHHH-CTTHHHHHHCSCHHHHHHHHHHHHHHHH----TCHH
T ss_pred             cCCCCCee---ehhhhhcCCCCCccceee---CHHHHHHhhcC-CCcccCCCCCCCHHHHHHHHHHHHHHhc----chHH
Confidence            23334443   689999855599999876   88855555421 1111122335667777777666542110    0112


Q ss_pred             HHHH-HHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeec--CC-------------CHHHHHHHHhcccEEEcCCC-
Q 012647          370 EMMA-GRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT--GL-------------NKAQSDNMTNKWHVYMTKDG-  432 (459)
Q Consensus       370 ~~~~-~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~--~l-------------~~~~~~~ll~~~gI~v~~gg-  432 (459)
                      ++.+ +..+..++.|.+.|. +++.   +..+.+.|.++.+.  ..             ..++.+.+++ +||.+.|+| 
T Consensus       346 ~~~~~~~~~~~~~~l~~~l~-~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~g~  420 (459)
T 4a6r_A          346 QRVKDDIGPYMQKRWRETFS-RFEH---VDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFR-NNLIMRACGD  420 (459)
T ss_dssp             HHHHHTHHHHHHHHHHHHHT-TCTT---EEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHH-TTEECEEETT
T ss_pred             HHHHHHHHHHHHHHHHHHHh-cCCC---eEEEEEEEEEEEEEEecCccccccccchHHHHHHHHHHHHH-CCeEEecCCC
Confidence            3333 344444444444554 4431   34455555544331  11             1234566666 599999976 


Q ss_pred             --cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          433 --RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       433 --Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                        ||+... .+++++++++++|+++++++
T Consensus       421 ~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  449 (459)
T 4a6r_A          421 HIVSAPPLVMTRAEVDEMLAVAERCLEEF  449 (459)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence              787432 29999999999999998753

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.95  E-value=7.5e-27  Score=235.03  Aligned_cols=327  Identities=14%  Similarity=0.017  Sum_probs=212.8

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      ...+||+.|.+.+..++  .+|.+.+++.+.++......| +.....++++.+++++.       .+++|++  ++||++
T Consensus        56 ~~~lD~~~~~~~~~lG~--~~~~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~-------~~~~v~~--~~sgse  123 (434)
T 2epj_A           56 ARIVDLVLAYGPLILGH--KHPRVLEAVEEALARGWLYGA-PGEAEVLLAEKILGYVK-------RGGMIRF--VNSGTE  123 (434)
T ss_dssp             CEEEESSGGGTTCTTCB--TCHHHHHHHHHHHHTCSCCSS-CCHHHHHHHHHHHHHHC-------TTCEEEE--ESSHHH
T ss_pred             CEEEEcccchhcccCCC--CCHHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHhCC-------CCCEEEE--eCCHHH
Confidence            46789999875333344  378999999998876432344 44445677777777752       1578999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh--------------hCCC------CeeeeeeecCCCCCCCHHHHHHH
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFN--------------DARV------PWSEYRYYDPKTVGLDFEGMIAD  222 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~--------------~~G~------~v~~v~~~~~~~~~~d~e~l~~~  222 (459)
                      +++++.++...+.++++|++.+|+|..+.....              ..|+      +++.+|.       .|++.+++.
T Consensus       124 A~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~  196 (434)
T 2epj_A          124 ATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-------NDVEALERV  196 (434)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-------TCHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-------CCHHHHHHH
Confidence            999986654345567899999999987544221              1232      2344443       389999999


Q ss_pred             HHcCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEc
Q 012647          223 IKAAPGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS  301 (459)
Q Consensus       223 i~~~~~~~~~ii~~~p~NPTG~~~-s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S  301 (459)
                      +++.++++++++++..+||||.++ +++.+++|.++|++||+++|+||+|.++..+    ....... .+..+++   .|
T Consensus       197 l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g----~~~~~~~-~~~~~di---~s  268 (434)
T 2epj_A          197 FAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLG----LEGAQGY-FNIEGDI---IV  268 (434)
T ss_dssp             HHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSS----TTHHHHH-HTCCCSE---EE
T ss_pred             HHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCC----cchhhHH-hCCCCCe---ee
Confidence            874222566666665667899865 7999999999999999999999999977432    1122222 2223343   38


Q ss_pred             CCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhc---cccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012647          302 YSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLA---RPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  378 (459)
Q Consensus       302 ~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  378 (459)
                      |||.++. |+|+||+++   +++.    .+.+....   ...+.+.+.+++.++...|+..      .+  ++..+++++
T Consensus       269 ~sK~l~~-G~~~G~v~~---~~~~----~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~------~~--~~~~~~~~~  332 (434)
T 2epj_A          269 LGKIIGG-GFPVGAVAG---SREV----MSLLTPQGKVFNAGTFNAHPITMAAGLATLKAL------EE--EPVYSVSRE  332 (434)
T ss_dssp             EEGGGGT-TSSCEEEEE---CHHH----HTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHH------HH--SCHHHHHHH
T ss_pred             ecchhcC-Ccceeeeee---cHHH----HHhhccCCCcccCCCCCcCHHHHHHHHHHHHHH------Hh--cCHHHHHHH
Confidence            9999995 999999976   7773    33332211   1122245666666665444311      11  244566677


Q ss_pred             HHHHHHHHHhhcc----CCCCCcccccCCcceeeecCCC------------------HHHHHHHHhcccEEEcCCC--cE
Q 012647          379 VRQKLFDSLSAKD----KSGKDWSFILRQIGMFSFTGLN------------------KAQSDNMTNKWHVYMTKDG--RI  434 (459)
Q Consensus       379 ~~~~l~~~L~~~~----g~~~~~~~~~~~~g~f~~~~l~------------------~~~~~~ll~~~gI~v~~gg--Ri  434 (459)
                      +++++.+.|+ ++    ++   ...+.+. |.|+|+.+.                  .++.+.|++ +||.+.+++  |+
T Consensus       333 ~~~~l~~~L~-~~~~~~~~---~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~  406 (434)
T 2epj_A          333 AAKALEEAAS-EVLDRTGL---PYTINRV-ESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLR-RGVFIAPSNLEAV  406 (434)
T ss_dssp             HHHHHHHHHH-HHHHHHTC---CEEEEEE-TTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTTSCE
T ss_pred             HHHHHHHHHH-HHHhhCCC---cEEEEEe-eeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHH-CCeEEeccCCCcE
Confidence            7777777776 54    42   1123344 445554321                  234556665 699999987  55


Q ss_pred             EEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          435 SLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       435 s~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                      .+.. .+++++++++++|+++++++
T Consensus       407 ~~~~~~t~e~i~~~l~~l~~~l~~~  431 (434)
T 2epj_A          407 FTGLPHQGEALEIAVEGLRSSLKTV  431 (434)
T ss_dssp             ECCTTCSHHHHHHHHHHHHHHHHHH
T ss_pred             EEeccCCHHHHHHHHHHHHHHHHHH
Confidence            4432 28999999999999998764

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.95  E-value=5.1e-27  Score=237.41  Aligned_cols=342  Identities=11%  Similarity=0.027  Sum_probs=221.1

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCC--CCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK--EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~--~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      ..||+..|...+..+..  +|.|.+++.+.+++....  .+.+.....+|++.+++++..      ..++|++  ++||+
T Consensus        76 ~ylD~~s~~~~~~lGh~--~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~L~e~la~~~~~------~~~~v~~--~~sGs  145 (457)
T 3tfu_A           76 EVLDAMSSWWTAIHGHG--HPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPA------GLDTVFF--SDSGS  145 (457)
T ss_dssp             EEEETTHHHHTCTTCBT--CHHHHHHHHHHHHHCSCCCSSSEECHHHHHHHHHHHHHSST------TEEEEEE--ESSHH
T ss_pred             EEEECCCcHhhhccCCC--CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCC------CcCEEEE--eCcHH
Confidence            68999988654444543  789999998887652111  222445566777777777521      1568999  99999


Q ss_pred             hHHHHHHHHHHHh------CCCCEEEEcCCCCcchHHHhhhC--------------CCCeeeeeeecCCCCCCCHHHHHH
Q 012647          162 GSLRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDA--------------RVPWSEYRYYDPKTVGLDFEGMIA  221 (459)
Q Consensus       162 ~a~~l~~~~~~~~------~~gd~Vlv~~p~y~~~~~~~~~~--------------G~~v~~v~~~~~~~~~~d~e~l~~  221 (459)
                      ++++++.+++...      ..+++|++.+|+|..+.......              ...+..+|.........|+++|++
T Consensus       146 eA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~  225 (457)
T 3tfu_A          146 VSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEA  225 (457)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHH
Confidence            9999997665443      23458999999997764433333              123344444212112248899999


Q ss_pred             HHHcCCCCcEEEEeCC-CCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012647          222 DIKAAPGGSFILLHGC-AHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (459)
Q Consensus       222 ~i~~~~~~~~~ii~~~-p~NPTG~~~-s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~  299 (459)
                      ++++.+++++++++++ ++||+|.++ +++.+++|.++|++||+++|+||+|.+++..+   ..+.... ....++++  
T Consensus       226 ~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G---~~~a~~~-~~~~pdii--  299 (457)
T 3tfu_A          226 QLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTG---ALFAADH-AGVSPDIM--  299 (457)
T ss_dssp             HHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSTHHH-HTCCCSEE--
T ss_pred             HHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCcccc---chhHhHh-cCCCceEE--
Confidence            9984333677888787 899999776 77889999999999999999999999887543   1222222 23334544  


Q ss_pred             EcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHH-hhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012647          300 QSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLK-RLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  377 (459)
Q Consensus       300 ~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  377 (459)
                       ||||.++ .| +|+||+++   +++.++.+..... ......+.+.+.+++.++...|+..      .+  +...++++
T Consensus       300 -t~sK~l~-gG~~~lG~v~~---~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~------~~--~~~~~~~~  366 (457)
T 3tfu_A          300 -CVGKALT-GGYLSLAATLC---TADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELL------LG--QDWRTRIT  366 (457)
T ss_dssp             -EECGGGG-TTSSCCEEEEE---EHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHH------HT--SCHHHHHH
T ss_pred             -EEChhhh-CCCcceEEEEE---cHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHH------hh--hHHHHHHH
Confidence             8999887 45 79999976   7774444321100 1111223356666666665554311      00  23456666


Q ss_pred             HHHHHHHHHHhhccC-CCCCcccccCCcceeeecCC----C-HHHHHHHHhcccEEEcCCC---cEEEcc-CChhhHHHH
Q 012647          378 NVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFTGL----N-KAQSDNMTNKWHVYMTKDG---RISLAG-LSLAKCEYL  447 (459)
Q Consensus       378 ~~~~~l~~~L~~~~g-~~~~~~~~~~~~g~f~~~~l----~-~~~~~~ll~~~gI~v~~gg---Ris~~~-~~~e~i~~~  447 (459)
                      ++.+++.+.|+ ++. .|. +..+.+.| .|+++.+    + .++.+.|+++ ||.+.|.|   ||+... .++++++++
T Consensus       367 ~~~~~l~~~L~-~l~~~~~-v~~vr~~G-~~~~i~l~~~~~~~~~~~~l~~~-Gv~v~~~~~~lRi~p~~~~t~eei~~~  442 (457)
T 3tfu_A          367 ELAAGLTAGLD-TARALPA-VTDVRVCG-AIGVIECDRPVDLAVATPAALDR-GVWLRPFRNLVYAMPPYICTPAEITQI  442 (457)
T ss_dssp             HHHHHHHHHHG-GGGGSTT-EEEEEECS-SCEEEEESSCCCHHHHHHHHHHT-TEECCCBTTEEEECCCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHH-HHhcCCC-eeeeecCC-eEEEEEECCcccHHHHHHHHHHC-CeEEEecCCEEEEECCCCCCHHHHHHH
Confidence            77777777787 652 111 33344454 4544432    2 3556677775 99999977   777543 289999999


Q ss_pred             HHHHHHHHhhc
Q 012647          448 ADAIIDSYHNV  458 (459)
Q Consensus       448 ~~~l~~~~~~~  458 (459)
                      +++|+++++++
T Consensus       443 l~~L~~~l~~~  453 (457)
T 3tfu_A          443 TSAMVEVARLV  453 (457)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHh
Confidence            99999999865

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.95  E-value=6.6e-27  Score=236.73  Aligned_cols=330  Identities=12%  Similarity=0.007  Sum_probs=203.0

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      ...+||+.|.+.+..++  .+|.|.+++.+.++...  .|   .+..++++++++++....+   .+++|++  ++||++
T Consensus        57 ~~~iD~~~~~~~~~lg~--~~~~v~~a~~~~~~~~~--~~---~~~~~~~~~la~~l~~~~~---~~~~v~~--~~gg~e  124 (453)
T 2cy8_A           57 NVYLDFFGGHGALVLGH--GHPRVNAAIAEALSHGV--QY---AASHPLEVRWAERIVAAFP---SIRKLRF--TGSGTE  124 (453)
T ss_dssp             CEEEESCTTTTSCTTCB--TCHHHHHHHHHHHTTTC--SS---CSSCHHHHHHHHHHHHHCT---TCSEEEE--ESCHHH
T ss_pred             CEEEECcccHhhcccCC--CCHHHHHHHHHHHHhCC--CC---CCCCHHHHHHHHHHHhhCC---CCCEEEE--eCCHHH
Confidence            46789999975333344  37899999999886532  22   2345788888888766543   3688999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhh-----------CCCC------eeeeeeecCCCCCCCHHHHHHHHHc
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-----------ARVP------WSEYRYYDPKTVGLDFEGMIADIKA  225 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-----------~G~~------v~~v~~~~~~~~~~d~e~l~~~i~~  225 (459)
                      +++++.++...+.++++|++.+|+|.++...+..           .|+.      +..+|.       .|++.+++.+++
T Consensus       125 A~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~  197 (453)
T 2cy8_A          125 TTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-------DDIEGMREVFAN  197 (453)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEECC----------------------------CGGGEEEECT-------TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-------CCHHHHHHHHHh
Confidence            9999866533345568899999999866543221           1321      222221       389999999874


Q ss_pred             CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCc
Q 012647          226 APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK  304 (459)
Q Consensus       226 ~~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  304 (459)
                      .++++++++++..+||||.+ .+++.+++|.++|++||+++|+||+|.++ ..+   ....... .+..+++   .||||
T Consensus       198 ~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g---~~~~~~~-~~~~~di---~s~sK  269 (453)
T 2cy8_A          198 HGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVG---NHGMQAL-LDVQPDL---TCLAK  269 (453)
T ss_dssp             HGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTC---TTHHHHH-HTCCCSE---EEEEG
T ss_pred             cCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccC---chhhhHH-hCCCCcE---EEECh
Confidence            22256666655556889975 57999999999999999999999999877 322   1222222 2223343   38999


Q ss_pred             CcccCCCCcceEEEEeCChhHHHHHHHH-HHhhccccccCCchHHHHHHHHHhCC-hhhHHHHHHHHHHHHHHHHHHHHH
Q 012647          305 NLGLYAERIGAMNVVCSSSDLAARVKSQ-LKRLARPMYSNPPVHGARIVANVVGN-PALFDEWKAEMEMMAGRIKNVRQK  382 (459)
Q Consensus       305 ~~~~~G~RiG~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~  382 (459)
                      .++ +|+|+||+++   +++.++.+... ........+.+.+.+++.++...|+. .         .+...+++++++++
T Consensus       270 ~l~-~G~~~G~v~~---~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~---------~~~~~~~~~~~~~~  336 (453)
T 2cy8_A          270 ASA-GGLPGGILGG---REDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL---------EDDVCAKINDLGQF  336 (453)
T ss_dssp             GGG-TTSSCEEEEE---CHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH---------HTTHHHHHHHHHHH
T ss_pred             hhh-CCcceEEEec---hHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh---------hhhHHHHHHHHHHH
Confidence            999 5999999976   77744333220 00001112235566666666554432 1         02344566666666


Q ss_pred             HHHHHhhcc----CCCCCcccccCCcceeeecCCC------------------------HHHHHHHHhcccEEEcCCCcE
Q 012647          383 LFDSLSAKD----KSGKDWSFILRQIGMFSFTGLN------------------------KAQSDNMTNKWHVYMTKDGRI  434 (459)
Q Consensus       383 l~~~L~~~~----g~~~~~~~~~~~~g~f~~~~l~------------------------~~~~~~ll~~~gI~v~~ggRi  434 (459)
                      +.+.|+ ++    +.   .....+. |.|+|+.+.                        .++.+.|++ +||.+.|++|+
T Consensus       337 l~~~L~-~~~~~~~~---~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gv~v~~~~~~  410 (453)
T 2cy8_A          337 AREAMN-HLFARKGL---NWLAYGR-FSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALIL-EGVDIGGRGSV  410 (453)
T ss_dssp             HHHHHH-HHHHHTTC---CEEEECC-TTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHH-TTEECBTTTEE
T ss_pred             HHHHHH-HHHhhCCC---cEEEEEe-eeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHH-CCeEEeCCCCE
Confidence            666665 43    31   1223444 445555321                        234566666 59999888755


Q ss_pred             EEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          435 SLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       435 s~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                      .+.. .+++++++++++|+++++++
T Consensus       411 ~l~~~~t~~~i~~~l~~l~~~l~~~  435 (453)
T 2cy8_A          411 FLSAQHEREHVEHLVTTFDRVLDRL  435 (453)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EeeccCCHHHHHHHHHHHHHHHHHH
Confidence            4332 28999999999999988753

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.95  E-value=5.8e-27  Score=237.09  Aligned_cols=338  Identities=10%  Similarity=0.022  Sum_probs=209.4

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCC-CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      +...+||+.|.+.+..+..  +|.|.+++.+.++.... ..+.+.....++++.+++++...      .+ |++  |+||
T Consensus        48 g~~~lD~~~~~~~~~lG~~--~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~------~~-v~~--~~gg  116 (452)
T 3n5m_A           48 GKRYLDGMSGLWCVNSGYG--RKELAEAAYKQLQTLSYFPMSQSHEPAIKLAEKLNEWLGGE------YV-IFF--SNSG  116 (452)
T ss_dssp             CCEEEETTHHHHTCTTCBC--CHHHHHHHHHHHTTCCCCCTTSEEHHHHHHHHHHHHHHTSC------EE-EEE--ESSH
T ss_pred             CCEEEECCcchhhccCCCC--CHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHhCCCC------ce-EEE--eCch
Confidence            3578999999654444543  78999999998865321 11123334455556666554221      34 888  9999


Q ss_pred             hhHHHHHHHHHHHh---C---CCCEEEEcCCCCcchHHHhhhCCCC-------------eeeeeeecCCCCCC-C-----
Q 012647          161 TGSLRLAAALIERY---F---PGAKVLISSPTWGNHKNIFNDARVP-------------WSEYRYYDPKTVGL-D-----  215 (459)
Q Consensus       161 t~a~~l~~~~~~~~---~---~gd~Vlv~~p~y~~~~~~~~~~G~~-------------v~~v~~~~~~~~~~-d-----  215 (459)
                      +++++.+.+++...   .   ++|+|++.+|+|.++.......+..             +..++......+.. |     
T Consensus       117 seA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (452)
T 3n5m_A          117 SEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIY  196 (452)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGG
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhH
Confidence            99999997665433   4   7899999999998876544444332             22333210000111 1     


Q ss_pred             ----HHHHHHHHH-cCCCCcEEEEeCCC-CCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH
Q 012647          216 ----FEGMIADIK-AAPGGSFILLHGCA-HNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (459)
Q Consensus       216 ----~e~l~~~i~-~~~~~~~~ii~~~p-~NPTG~~~-s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~  288 (459)
                          +++|++.++ ..++++++++++++ +| ||.++ +++.+++|.++|++||+++|+||+|.+++..+.   ..... 
T Consensus       197 ~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~---~~~~~-  271 (452)
T 3n5m_A          197 DVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGK---AFGFM-  271 (452)
T ss_dssp             GCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGG-
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccc---cchhh-
Confidence                899999997 22236777777777 89 99765 888899999999999999999999998875431   11111 


Q ss_pred             HHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHh------hccccccCCchHHHHHHHHHhCChhh
Q 012647          289 FATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKR------LARPMYSNPPVHGARIVANVVGNPAL  361 (459)
Q Consensus       289 ~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~L~~~~~  361 (459)
                      ..+..+++   .+|||.++. | +|+||+++   +++    +.+.+..      .....+.+.+.+++.++...|+... 
T Consensus       272 ~~~~~~di---~t~sK~l~~-G~~~ig~~~~---~~~----i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-  339 (452)
T 3n5m_A          272 NYDVKPDI---ITMAKGITS-AYLPLSATAV---KRE----IYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIE-  339 (452)
T ss_dssp             GTTCCCSE---EEECGGGGT-TSSCCEEEEE---EHH----HHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHH-
T ss_pred             hcCCCCCE---EeecccccC-CCcceEEEEE---CHH----HHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHH-
Confidence            11222333   379999995 9 99999976   777    4443321      1122333567777777765554210 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCCcccccCCcceeeecCC----------C----HHHHHHHHhccc
Q 012647          362 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGL----------N----KAQSDNMTNKWH  425 (459)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--g~~~~~~~~~~~~g~f~~~~l----------~----~~~~~~ll~~~g  425 (459)
                           +  +...++++++.+++.+.|+ ++  +.| .+..+.+.|.++ ++.+          +    .++.+.+++ +|
T Consensus       340 -----~--~~~~~~~~~~~~~l~~~L~-~~~~~~~-~~~~~~~~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~G  408 (452)
T 3n5m_A          340 -----N--ENLIERSAQMGSLLLEQLK-EEIGEHP-LVGDIRGKGLLV-GIELVNDKETKEPIDNDKIASVVNACKE-KG  408 (452)
T ss_dssp             -----H--TTHHHHHHHHHHHHHHHHH-HHHTTCT-TEEEEEESSSCE-EEEEEEETTTTEECCHHHHHHHHHHHHH-TT
T ss_pred             -----h--ccHHHHHHHHHHHHHHHHH-HHHhcCC-CeEEEEEEEEEE-EEEEecCCcccCCCCHHHHHHHHHHHHH-CC
Confidence                 0  1233444444455555444 32  111 133445555443 3322          1    234556666 59


Q ss_pred             EEEcCCC----------cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          426 VYMTKDG----------RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       426 I~v~~gg----------Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                      |.+.|++          ||+++. .+++++++++++|+++++++
T Consensus       409 v~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  452 (452)
T 3n5m_A          409 LIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMERI  452 (452)
T ss_dssp             EECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred             cEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhC
Confidence            9998763          776433 28999999999999998763

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.95  E-value=5.6e-26  Score=228.30  Aligned_cols=328  Identities=13%  Similarity=0.050  Sum_probs=204.6

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...+|+..|.+.+..++.  +|.|.+++.+.++....+.| +.....++++.+++++. .      ++++++  ++||+
T Consensus        52 g~~ylD~~~~~~~~~lG~~--~p~v~~A~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~-~------~~~v~~--~~sGs  119 (429)
T 4e77_A           52 GKAYIDYVGSWGPMILGHN--HPAIRQAVIEAVERGLSFGA-PTEMEVKMAQLVTDLVP-T------MDMVRM--VNSGT  119 (429)
T ss_dssp             CCEEEESSGGGTTCTTCBT--CHHHHHHHHHHHTTCSCCSS-CCHHHHHHHHHHHHHST-T------CSEEEE--ESSHH
T ss_pred             CCEEEECCCchhccccCCC--CHHHHHHHHHHHHhCcccCC-CCHHHHHHHHHHHhhCC-C------CCEEEE--eCcHH
Confidence            4578999998864444543  79999999998866432334 55666778888887753 1      578999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh-hCC-------------C------CeeeeeeecCCCCCCCHHHHHH
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DAR-------------V------PWSEYRYYDPKTVGLDFEGMIA  221 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~G-------------~------~v~~v~~~~~~~~~~d~e~l~~  221 (459)
                      ++++++.++...+.++++|++.+++|.++..... ..|             .      .+..+|.       .|++++++
T Consensus       120 ea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~  192 (429)
T 4e77_A          120 EATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTY-------NDLASVRQ  192 (429)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECT-------TCHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCC-------CCHHHHHH
Confidence            9999997765445577899999999987654211 111             1      1111211       28999999


Q ss_pred             HHHcCCCCcEEEEeCCCCCCCCCCC--CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012647          222 DIKAAPGGSFILLHGCAHNPTGIDP--TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (459)
Q Consensus       222 ~i~~~~~~~~~ii~~~p~NPTG~~~--s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~  299 (459)
                      .+++.++++++++ ++|+||+|.++  +++.+++|.++|++||+++|+||+|.++ ..+   ....... ....+++   
T Consensus       193 ~l~~~~~~~~~vi-~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g---~~~~~~~-~~~~pdi---  263 (429)
T 4e77_A          193 AFEQYPQEVACII-VEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVA---LAGAQDY-YHVIPDL---  263 (429)
T ss_dssp             HHHHSTTTEEEEE-ECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTB---TTCHHHH-TTCCCSE---
T ss_pred             HHHhcCCCEEEEE-ECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccC---cchHHHh-cCCCCCe---
Confidence            9986444555555 56666665433  3455999999999999999999999988 321   1112222 2223343   


Q ss_pred             EcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhh---ccccccCCchHHHHHHHHHhC---ChhhHHHHHHHHHHHH
Q 012647          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRL---ARPMYSNPPVHGARIVANVVG---NPALFDEWKAEMEMMA  373 (459)
Q Consensus       300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~---~~~~~~~~~~~~~~~~  373 (459)
                      .||||.++ +|+|+||+++   +++    +++.+...   ....+.+.+.+++.++...|+   +.++       +++.+
T Consensus       264 ~t~sK~~~-~G~~~G~~~~---~~~----~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~-------~~~~~  328 (429)
T 4e77_A          264 TCLGKIIG-GGMPVGAFGG---RRE----VMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGV-------YETLT  328 (429)
T ss_dssp             EEEEGGGG-TTSCCEEEEE---CHH----HHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTH-------HHHHH
T ss_pred             eeeccccc-CCCCeEEEEE---CHH----HHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCH-------HHHHH
Confidence            38999999 7999999866   777    33333321   112222556666666654443   3222       22333


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC--C-----------------HHHHHHHHhcccEEEcCCC--
Q 012647          374 GRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--N-----------------KAQSDNMTNKWHVYMTKDG--  432 (459)
Q Consensus       374 ~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l--~-----------------~~~~~~ll~~~gI~v~~gg--  432 (459)
                      +..+..++.|.+.+. +++.    ....+..|.|+|+.+  .                 .++.+.|++ +||.+.+++  
T Consensus       329 ~~~~~l~~~L~~~~~-~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~~  402 (429)
T 4e77_A          329 ELTDSLATGLRHAAK-EENI----PLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLE-EGVYLAPSAFE  402 (429)
T ss_dssp             HHHHHHHHHHHHHHH-HTTC----CCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHH-TTEECCSSTTS
T ss_pred             HHHHHHHHHHHHHHH-hCCC----ceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHH-CCeEEeecCCC
Confidence            333333444444444 4442    222233455555432  1                 345667766 499999987  


Q ss_pred             cEEEccC-ChhhHHHHHHHHHHHHhhc
Q 012647          433 RISLAGL-SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       433 Ris~~~~-~~e~i~~~~~~l~~~~~~~  458 (459)
                      |+.+... +++++++++++|+++++++
T Consensus       403 ~~~~~~~~t~e~i~~~l~~l~~~l~~~  429 (429)
T 4e77_A          403 AGFMSLAHSNEDIQKTVNAARRCFAKL  429 (429)
T ss_dssp             CEECCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred             CEEEeccCCHHHHHHHHHHHHHHHHhC
Confidence            6554432 8999999999999998763

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.95  E-value=1e-26  Score=233.76  Aligned_cols=319  Identities=16%  Similarity=0.117  Sum_probs=199.1

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCC---------cccHHHHHHHHHHHhcCCCCccccCceEE
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI---------EGLAAFNKVTAELLFGADNSVLKEQRVAT  154 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~---------~g~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (459)
                      +++.|..+.+    .  +.++.+.+++.+.+...  ..|+..         ....++|+++++++..      ++++|++
T Consensus        18 ~~~~Ld~~~~----~--~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~------~~~~v~~   83 (432)
T 3a9z_A           18 RKVYMDYNAT----T--PLEPEVIQAVTEAMKEA--WGNPSSSYVAGRKAKDIINTARASLAKMIGG------KPQDIIF   83 (432)
T ss_dssp             CCEECBTTTC----C--CCCHHHHHHHHHHHHHC--CSCTTCSSHHHHHHHHHHHHHHHHHHHHHTC------CGGGEEE
T ss_pred             CcEEeeCCcc----C--CCCHHHHHHHHHHHHHh--cCCCccCcHHHHHHHHHHHHHHHHHHHHcCC------CcCeEEE
Confidence            5677776654    2  34899999999887542  233211         1246999999999743      2678999


Q ss_pred             eecccchhHHHHHHHHHHH------hCCCCEEEEcCCCCcch-----------------HHHhhhCCCCeeeeeeecCCC
Q 012647          155 VQGLSGTGSLRLAAALIER------YFPGAKVLISSPTWGNH-----------------KNIFNDARVPWSEYRYYDPKT  211 (459)
Q Consensus       155 ~~t~ggt~a~~l~~~~~~~------~~~gd~Vlv~~p~y~~~-----------------~~~~~~~G~~v~~v~~~~~~~  211 (459)
                        |+|++++++++.+.+..      ..+||+|++++|+|..|                 ....+..|++++.+|+++ ++
T Consensus        84 --~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~-~~  160 (432)
T 3a9z_A           84 --TSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSK-VN  160 (432)
T ss_dssp             --ESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCT-TT
T ss_pred             --eCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCc-cc
Confidence              99999999998554421      14899999999999875                 334456799999999852 35


Q ss_pred             CCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC----------CeeEEeccCCCCCCCCCCC
Q 012647          212 VGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN----------HIPFFDVAYQGFASGSLDN  281 (459)
Q Consensus       212 ~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~----------~~ii~Deay~~~~~~~~~~  281 (459)
                      +.+|++.+++++++   +++++++++|+||||.+++.   ++|.++|+++|          +++|+|++|..... .  .
T Consensus       161 ~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~~---~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~-~--~  231 (432)
T 3a9z_A          161 GQVEVEDILAAVRP---TTCLVTIMLANNETGVIMPI---SEISRRIKALNQIRAASGLPRVLVHTDAAQALGKR-R--V  231 (432)
T ss_dssp             SSCCHHHHHHTCCT---TEEEEECCSBCTTTCBBCCH---HHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTS-C--C
T ss_pred             CCcCHHHHHHhccC---CceEEEEECcccCcccccCH---HHHHHHHHhcCcccccccCCceEEEEEchhhhCCc-c--c
Confidence            67999999998875   78899999999999999875   56888899998          99999999865321 1  1


Q ss_pred             ChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhh-------ccccccCCchHHHHHHHH
Q 012647          282 DASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRL-------ARPMYSNPPVHGARIVAN  354 (459)
Q Consensus       282 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~  354 (459)
                         .+..   ... .+++.|+||.+|   .|+||+++   +++..   ...+...       ......+++..++.++..
T Consensus       232 ---~~~~---~~~-d~~~~s~~K~~g---~~~G~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a  295 (432)
T 3a9z_A          232 ---DVED---LGV-DFLTIVGHKFYG---PRIGALYV---RGVGK---LTPLYPMLFGGGQERNFRPGTENTPMIAGLGK  295 (432)
T ss_dssp             ---CHHH---HCC-SEEEEEGGGTTC---CSCEEEEE---TTBTT---TBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHH
T ss_pred             ---Chhh---cCC-CEEEEehhHhcC---CcceEEEE---ccccc---cCCcCceeecCCccccccCCCcCHHHHHHHHH
Confidence               1211   122 356899999875   56999966   54420   1111110       011112345555544444


Q ss_pred             HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCcccc--cC------Cc--ceeeecCC--CHHH-HHHH
Q 012647          355 VVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFI--LR------QI--GMFSFTGL--NKAQ-SDNM  420 (459)
Q Consensus       355 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~--~~------~~--g~f~~~~l--~~~~-~~~l  420 (459)
                      .++   +.   .+.+++++++++++++++.+.|+ ++ |    +.+.  .+      .+  ..|.+.+.  +.+. .+.+
T Consensus       296 al~---~~---~~~~~~~~~~~~~~~~~l~~~L~-~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  364 (432)
T 3a9z_A          296 AAD---LV---SENCETYEAHMRDIRDYLEERLE-AEFG----KRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQC  364 (432)
T ss_dssp             HHH---HH---HHHHHHHHHHHHHHHHHHHHHHH-HHHG----GGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHC
T ss_pred             HHH---HH---HhhHHHHHHHHHHHHHHHHHHHH-hccC----CcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHh
Confidence            432   11   23467888999999999999998 74 4    2221  11      11  23444442  3333 3332


Q ss_pred             HhcccEEEcC-------------------C-------C--cEEEccC-ChhhHHHHHHHHHHHHhhc
Q 012647          421 TNKWHVYMTK-------------------D-------G--RISLAGL-SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       421 l~~~gI~v~~-------------------g-------g--Ris~~~~-~~e~i~~~~~~l~~~~~~~  458 (459)
                         .+|.+..                   |       +  ||+++.. +++++++++++|+++++++
T Consensus       365 ---~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~  428 (432)
T 3a9z_A          365 ---QTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQL  428 (432)
T ss_dssp             ---SSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ---cCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHh
Confidence               1333321                   1       3  9999865 7999999999999998764

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.1e-27  Score=241.10  Aligned_cols=323  Identities=13%  Similarity=0.125  Sum_probs=223.0

Q ss_pred             cHHHHHHHHHHhhcC---CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHh---CC
Q 012647          103 LDVVKKAENLMLERG---ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY---FP  176 (459)
Q Consensus       103 ~~~v~~a~~~~~~~~---~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~---~~  176 (459)
                      ++.+.+++.+.+...   ....|....|..++++.+++++....|.+..++++++  ++||++++.++.+.+...   .+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~--~~ggt~a~~~a~~a~~~~~~~~~  154 (497)
T 3mc6_A           77 GDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTT--TSGGTESLLLACLSAKMYALHHR  154 (497)
T ss_dssp             CHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEE--ESSHHHHHHHHHHHHHHHHHHHS
T ss_pred             chHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEE--cCcHHHHHHHHHHHHHHHHHhcC
Confidence            466777766665431   1245666678888888888887777776555778999  999999999985444221   14


Q ss_pred             C---CEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHH
Q 012647          177 G---AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEK  253 (459)
Q Consensus       177 g---d~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~  253 (459)
                      |   |+|+++.|+|..+...++..|++++.+|+++ +++.+|+++|++++++   +++++++++|+||||.+   .++++
T Consensus       155 g~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~---~~~~v~~~~p~nptG~~---~~l~~  227 (497)
T 3mc6_A          155 GITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDP-TTYQVDLGKVKKFINK---NTVLLVGSAPNFPHGIA---DDIEG  227 (497)
T ss_dssp             CCSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCT-TTCSBCTTTTGGGCCS---SEEEEEEETTCTTTCCC---CSCTT
T ss_pred             CCCCceEEEeCCccHHHHHHHHHcCCeEEEEecCc-ccCcCCHHHHHHHHhh---CCEEEEEECCCCCCCcC---CCHHH
Confidence            5   8999999999999999999999999999853 4688999999999876   78899999999999999   55778


Q ss_pred             HHHHHHhcCCeeEEeccCCCCCCC-----CCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHH
Q 012647          254 IADVIQEKNHIPFFDVAYQGFASG-----SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR  328 (459)
Q Consensus       254 i~~l~~~~~~~ii~Deay~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~  328 (459)
                      |+++|++||+++|+|++|.++...     +.. ..+.+.  ....+.++++.|++|.++ .|.++||++  ++++.    
T Consensus       228 i~~la~~~g~~livD~a~~~~~~~f~~~~~~~-~~~~~~--~~~~g~d~~~~s~~K~l~-~~~~~g~~~--~~~~~----  297 (497)
T 3mc6_A          228 LGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYK-NLPLLD--FRVPGVTSISCDTHKYGF-APKGSSVIM--YRNSD----  297 (497)
T ss_dssp             TTTHHHHTTCCEEEETTTTHHHHGGGTTTTCC-SCCCCS--TTSTTCCEEEEETTTTTC-CCSSCEEEE--CSSHH----
T ss_pred             HHHHHHHhCCEEEEECcchhhhhhhhhhhccc-CCcccc--ccCCCCcEEEECchhhcC-CCCCceeEE--ecCHH----
Confidence            999999999999999998754210     000 000000  112234688889999864 677899984  44443    


Q ss_pred             HHHHHHhhcccccc-----CCc---------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCC
Q 012647          329 VKSQLKRLARPMYS-----NPP---------VHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK-DKS  393 (459)
Q Consensus       329 ~~~~~~~~~~~~~~-----~~~---------~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~g~  393 (459)
                      +... .......+.     .+.         ..++.++...+..        +.+++..+++.++++++.+.|+ + ++ 
T Consensus       298 ~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~--------~~~~~~~~~~~~~~~~l~~~L~-~~~~-  366 (497)
T 3mc6_A          298 LRMH-QYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGE--------NGYIESCQEIVGAAMKFKKYIQ-ENIP-  366 (497)
T ss_dssp             HHTT-TSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH-HSCT-
T ss_pred             HHhh-hhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHH-hcCC-
Confidence            2111 111111110     111         2234444433322        2346778888889999999999 7 32 


Q ss_pred             CCCcccc-cCCcceeeec--CCCHHH-HHHHHhcccEEEcCCC-----cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          394 GKDWSFI-LRQIGMFSFT--GLNKAQ-SDNMTNKWHVYMTKDG-----RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       394 ~~~~~~~-~~~~g~f~~~--~l~~~~-~~~ll~~~gI~v~~gg-----Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                        +++++ .+.++++.|.  +.+... .+.|.+ +||.+.+++     |++++..+++++++++++|+++++++
T Consensus       367 --g~~~~~~~~~~~v~~~~~~~~~~~l~~~L~~-~Gi~v~~~~~~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~  437 (497)
T 3mc6_A          367 --DLDIMGNPRYSVISFSSKTLNIHELSDRLSK-KGWHFNALQKPVALHMAFTRLSAHVVDEICDILRTTVQEL  437 (497)
T ss_dssp             --TCEECSCCCSSEEEEECTTTTHHHHHHHHHT-TTCBCEECCSSCCEEEECCTTTTCTHHHHHHHHHHHHHHH
T ss_pred             --CEEEecCCCeeEEEEeCCCCCHHHHHHHHHh-CCEEEecCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence              14554 4566666664  345444 555555 599887653     99988668999999999999998764

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.95  E-value=4.7e-26  Score=230.19  Aligned_cols=340  Identities=11%  Similarity=0.058  Sum_probs=214.3

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCC-cccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI-EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~-~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      ...+|++.|.+...-++.  +|.|.+++.+.+....   +... .+..++++.+++.+....+  ..+++|++  |+||+
T Consensus        50 ~~~lD~~~~~~~~~lG~~--~~~v~~a~~~~~~~~~---~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~--~~ggs  120 (449)
T 3a8u_X           50 RKVYDSLSGLWTCGAGHT--RKEIQEAVAKQLSTLD---YSPGFQYGHPLSFQLAEKITDLTP--GNLNHVFF--TDSGS  120 (449)
T ss_dssp             CEEEETTHHHHTCTTCBS--CHHHHHHHHHHTTTCS---CCCSSSCCCHHHHHHHHHHHTTSS--TTEEEEEE--ESSHH
T ss_pred             CEEEECCccHhhccCCCC--CHHHHHHHHHHHHhCC---CccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--cCcHH
Confidence            457899888753233433  7899999998885421   1111 2223344444444433322  23678999  99999


Q ss_pred             hHHHHHHHHHHHhC------CCCEEEEcCCCCcchH-HHhhhCCC------------Ceeeeeeec--CCC-CCCC----
Q 012647          162 GSLRLAAALIERYF------PGAKVLISSPTWGNHK-NIFNDARV------------PWSEYRYYD--PKT-VGLD----  215 (459)
Q Consensus       162 ~a~~l~~~~~~~~~------~gd~Vlv~~p~y~~~~-~~~~~~G~------------~v~~v~~~~--~~~-~~~d----  215 (459)
                      ++++++.+++..+.      +||+|++.+|+|..+. ..+...|.            .+..++...  ..+ .++|    
T Consensus       121 ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~  200 (449)
T 3a8u_X          121 ECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEG  200 (449)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSS
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHH
Confidence            99999866553322      6799999999998763 34444331            234444311  111 1356    


Q ss_pred             ----HHHHHHHHHcCC-CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH
Q 012647          216 ----FEGMIADIKAAP-GGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF  289 (459)
Q Consensus       216 ----~e~l~~~i~~~~-~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~  289 (459)
                          ++.|++++++.. +++++++++..+||||. +.+++.+++|.++|++||+++|+||+|.+++..+   ....+.. 
T Consensus       201 ~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g---~~~~~~~-  276 (449)
T 3a8u_X          201 GIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG---SMFGADS-  276 (449)
T ss_dssp             HHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSHHHH-
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccC---cchhhhh-
Confidence                999999997421 25566665545678996 6679999999999999999999999998886432   1122222 


Q ss_pred             HhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhh---------ccccccCCchHHHHHHHHHhCCh
Q 012647          290 ATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRL---------ARPMYSNPPVHGARIVANVVGNP  359 (459)
Q Consensus       290 ~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~L~~~  359 (459)
                      ....++++   ||||.++ +| +|+||+++   +++.+    +.+...         ....+.+.+.+++.++...|+..
T Consensus       277 ~~~~~di~---s~sK~l~-~G~~~~G~~~~---~~~~~----~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~  345 (449)
T 3a8u_X          277 FGVTPDLM---CIAKQVT-NGAIPMGAVIA---STEIY----QTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLL  345 (449)
T ss_dssp             HTCCCSEE---EECGGGG-TTSSCCEEEEE---EHHHH----HHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCEE---EEccccc-CCCCceEEEEE---CHHHH----HHhhccCcccccccccccCCCcccHHHHHHHHHHHHHH
Confidence            22233433   8999999 58 99999866   66744    333332         11223355666666665554311


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCcccccCCcceeeecCCC-----H-----HHHHHHHhcccEEE
Q 012647          360 ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFTGLN-----K-----AQSDNMTNKWHVYM  428 (459)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~g~f~~~~l~-----~-----~~~~~ll~~~gI~v  428 (459)
                            .+  +...++++++++++.+.|+ +++ ++. +....+ .|+|+|+.+.     .     ++.+.|++ +||.+
T Consensus       346 ------~~--~~~~~~~~~~~~~l~~~L~-~l~~~~~-~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~l~~-~Gv~v  413 (449)
T 3a8u_X          346 ------QK--ENLVQSVAEVAPHFEKALH-GIKGAKN-VIDIRN-FGLAGAIQIAPRDGDAIVRPFEAGMALWK-AGFYV  413 (449)
T ss_dssp             ------HH--TTHHHHHHHHHHHHHHHHH-TTTTSTT-EEEEEE-ETTEEEEEECCBTTBSSHHHHHHHHHHHH-HTEEC
T ss_pred             ------Hh--cCHHHHHHHHHHHHHHHHH-HHhcCCC-eEEEee-eEEEEEEEEecCcccccccHHHHHHHHHH-CCcEE
Confidence                  11  2456777888888888888 653 211 112233 3556665331     1     45667776 59999


Q ss_pred             cCCC---cEEEc-cCChhhHHHHHHHHHHHHhhc
Q 012647          429 TKDG---RISLA-GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       429 ~~gg---Ris~~-~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      .++|   ||++. ..+++++++++++|+++++++
T Consensus       414 ~~~g~~iRis~~~~~t~~~i~~~l~~l~~~l~~~  447 (449)
T 3a8u_X          414 RFGGDTLQFGPTFNSKPQDLDRLFDAVGEVLNKL  447 (449)
T ss_dssp             EEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             ecCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence            9875   88854 338999999999999998764

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.95  E-value=5.5e-26  Score=228.89  Aligned_cols=328  Identities=11%  Similarity=0.082  Sum_probs=220.2

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCC--CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...+||..|.+....++  .+|.+.+++.+.++....  ..| +.....++++.+++++.        .+++++  ++|
T Consensus        75 g~~ylD~~sg~~~~~lgh--~~p~v~~Ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~g--------~~~v~~--~~s  141 (439)
T 2oat_A           75 GRKYFDFLSSYSAVNQGH--CHPKIVNALKSQVDKLTLTSRAF-YNNVLGEYEEYITKLFN--------YHKVLP--MNT  141 (439)
T ss_dssp             CCEEEESSGGGGTTTTCB--TCHHHHHHHHHHHTTCSCCCTTS-EESSHHHHHHHHHHHHT--------CSEEEE--ESS
T ss_pred             CCEEEEccCCcccccCCC--CCHHHHHHHHHHHHhcCcccCcc-CCHHHHHHHHHHHHhcC--------CCEEEE--eCC
Confidence            356889999875222232  378999999998865311  123 34456788888888862        478989  999


Q ss_pred             chhHHHHHHHHHHHh-------CCC-CEEEEcCCCCcch-HHHhhhCC------------CCeeeeeeecCCCCCCCHHH
Q 012647          160 GTGSLRLAAALIERY-------FPG-AKVLISSPTWGNH-KNIFNDAR------------VPWSEYRYYDPKTVGLDFEG  218 (459)
Q Consensus       160 gt~a~~l~~~~~~~~-------~~g-d~Vlv~~p~y~~~-~~~~~~~G------------~~v~~v~~~~~~~~~~d~e~  218 (459)
                      |+++++++.+++..+       .+| |+|++++|+|.++ ...+...|            .+++.+|.       .|++.
T Consensus       142 GseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~  214 (439)
T 2oat_A          142 GVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPA  214 (439)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS-------SCHHH
T ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC-------CCHHH
Confidence            999999986665322       357 8999999999765 33444444            35555554       28999


Q ss_pred             HHHHHHcCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEE
Q 012647          219 MIADIKAAPGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (459)
Q Consensus       219 l~~~i~~~~~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i  297 (459)
                      +++.++.  +++++++++..+|+||. +++++++++|.++|++||+++|+||+|.+++..+.   .+.... ....++++
T Consensus       215 le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~---~~~~~~-~~~~~Di~  288 (439)
T 2oat_A          215 LERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR---WLAVDY-ENVRPDIV  288 (439)
T ss_dssp             HHHHTTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGG-GTCCCSEE
T ss_pred             HHHHhCC--CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCc---chhHHH-hCCCCcEE
Confidence            9999853  36677776666778996 57999999999999999999999999987764321   111111 12223433


Q ss_pred             EEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012647          298 VAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI  376 (459)
Q Consensus       298 ~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~  376 (459)
                         ||||.++ +| +|+||+++   +++    +.+.+.......+.+.+.+++.++...|+..      .+  +...+++
T Consensus       289 ---t~sK~l~-~G~~~~G~v~~---~~~----~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~------~~--~~~~~~~  349 (439)
T 2oat_A          289 ---LLGKALS-GGLYPVSAVLC---DDD----IMLTIKPGEHGSTYGGNPLGCRVAIAALEVL------EE--ENLAENA  349 (439)
T ss_dssp             ---EECGGGG-TTSSCCEEEEE---CHH----HHTTSCTTSSCCSSTTCHHHHHHHHHHHHHH------HH--TTHHHHH
T ss_pred             ---Eeccccc-CCCCCeEEEEE---CHH----HHhccCCCCcccCCCcCHHHHHHHHHHHHHH------hh--hhHHHHH
Confidence               9999999 68 99999976   777    3333332222223355666666665544311      11  2456788


Q ss_pred             HHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC------CH-HHHHHHHhcccEEEcCCC----cEEEcc-CChhhH
Q 012647          377 KNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL------NK-AQSDNMTNKWHVYMTKDG----RISLAG-LSLAKC  444 (459)
Q Consensus       377 ~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l------~~-~~~~~ll~~~gI~v~~gg----Ris~~~-~~~e~i  444 (459)
                      +++++++.+.|+ +++.+. +....+. |.|+|+.+      +. ++.+.|++ +||.+.|++    ||+++. .+++++
T Consensus       350 ~~~~~~l~~~L~-~l~~~~-~~~~~~~-g~~~~v~l~~~~~~~~~~l~~~l~~-~Gv~v~~~~~~~iRi~~~~~~t~e~i  425 (439)
T 2oat_A          350 DKLGIILRNELM-KLPSDV-VTAVRGK-GLLNAIVIKETKDWDAWKVCLRLRD-NGLLAKPTHGDIIRFAPPLVIKEDEL  425 (439)
T ss_dssp             HHHHHHHHHHHT-TSCTTT-EEEEEEE-TTEEEEEECCCSSCCHHHHHHHHHH-TTEECCBSSSSEEEECCCTTCCHHHH
T ss_pred             HHHHHHHHHHHH-HhcCCC-cEEEEee-eeEEEEEEecCccHHHHHHHHHHHH-CCeEEecCCCCEEEEECccCCCHHHH
Confidence            889999999998 775321 1123333 44555432      23 45667766 599999864    887652 389999


Q ss_pred             HHHHHHHHHHHhhc
Q 012647          445 EYLADAIIDSYHNV  458 (459)
Q Consensus       445 ~~~~~~l~~~~~~~  458 (459)
                      ++++++|+++++++
T Consensus       426 ~~~l~~l~~~l~~~  439 (439)
T 2oat_A          426 RESIEIINKTILSF  439 (439)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999998764

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.95  E-value=1.4e-26  Score=226.78  Aligned_cols=317  Identities=11%  Similarity=0.044  Sum_probs=207.5

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCC--CCCCCCC--cccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~--~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      ++++|..|-       ..+++.+.+++.+.+....  ...+.+.  .-..++++.+++++.    .. ++++|++  |+|
T Consensus         4 ~~~~~~p~p-------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g----~~-~~~~v~~--~~g   69 (362)
T 3ffr_A            4 NKIYFTPGP-------SELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLE----LP-SNYEVLF--LAS   69 (362)
T ss_dssp             CCEEECSSS-------CCCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTT----CC-TTEEEEE--ESC
T ss_pred             cceeccCCC-------cCCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhC----CC-CCcEEEE--eCC
Confidence            356666442       2347888888877765432  1111111  123455566666643    21 2577988  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCc-chHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCC
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWG-NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA  238 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~-~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p  238 (459)
                      ++++++++  +.+...+ +.+++..|.|. .+...++..|++++.++.  +.++.+|+++++  ++   ++++++++++|
T Consensus        70 ~t~al~~~--~~~l~~~-~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~--~~---~~~~~v~~~~~  139 (362)
T 3ffr_A           70 ATEIWERI--IQNCVEK-KSFHCVNGSFSKRFYEFAGELGREAYKEEA--AFGKGFYPADIT--VP---ADAEIICLTHN  139 (362)
T ss_dssp             HHHHHHHH--HHHHCSS-EEEEEECSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCGGGCC--CC---TTCCEEEEESE
T ss_pred             chHHHHHH--HHhccCC-cEEEEcCcHHHHHHHHHHHHhCCCeEEEec--CCCCCCCHHHHh--cc---CCccEEEEEcC
Confidence            99999998  3433556 55556666665 234567788999999998  446789999998  43   37888888999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhc-CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc-cCCCCcceE
Q 012647          239 HNPTGIDPTPEQWEKIADVIQEK-NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAM  316 (459)
Q Consensus       239 ~NPTG~~~s~~~l~~i~~l~~~~-~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~  316 (459)
                      |||||.+++   +++|+++|++| |+++|+|++|...... .  +.       .  ..++++.|+||.++ ++|  +|++
T Consensus       140 ~nptG~~~~---l~~i~~la~~~p~~~li~D~a~~~~~~~-~--~~-------~--~~d~~~~s~~K~~~~~~G--~g~~  202 (362)
T 3ffr_A          140 ETSSGVSMP---VEDINTFRDKNKDALIFVDAVSSLPYPK-F--DW-------T--KIDSVFFSVQKCFGLPAG--LGVW  202 (362)
T ss_dssp             ETTTTEECC---HHHHTTSGGGSTTSEEEEECTTTTTSSC-C--CT-------T--SCSEEEEETTSTTCCCSC--CEEE
T ss_pred             CCCcceeCC---HHHHHHHHHhCCCCEEEEecccccCCcc-c--Ch-------h--HCcEEEEecccccCCCCc--eEEE
Confidence            999999976   67799999999 9999999997654421 1  10       1  14588899999998 788  5777


Q ss_pred             EEEeCChhHHHHHHHHHH----------------hhc-cccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012647          317 NVVCSSSDLAARVKSQLK----------------RLA-RPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV  379 (459)
Q Consensus       317 ~~v~~~~~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~  379 (459)
                      ++   +++.++.+.....                ... .....+++..++.++...++.  +.   .+.+++++++++++
T Consensus       203 ~~---~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~--~~---~~~~~~~~~~~~~~  274 (362)
T 3ffr_A          203 IL---NDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGD--ML---QISADGIRKQTEEK  274 (362)
T ss_dssp             EE---EHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH--HH---HHCHHHHHHHHHHH
T ss_pred             EE---CHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHH--HH---HccHHHHHHHHHHH
Confidence            55   7776555544321                000 011224555555444433321  00   12257888999999


Q ss_pred             HHHHHHHHhhcc-CCCCCcccccCC----cceeeecCC--CH-HHHHHHHhcccEEEcCC------C--cEEEccC-Chh
Q 012647          380 RQKLFDSLSAKD-KSGKDWSFILRQ----IGMFSFTGL--NK-AQSDNMTNKWHVYMTKD------G--RISLAGL-SLA  442 (459)
Q Consensus       380 ~~~l~~~L~~~~-g~~~~~~~~~~~----~g~f~~~~l--~~-~~~~~ll~~~gI~v~~g------g--Ris~~~~-~~e  442 (459)
                      ++++.+.|+ ++ |    +++..+.    .+.++|+.+  +. ++.+.|.++ ||.+.+|      +  |||++.. +++
T Consensus       275 ~~~l~~~L~-~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~g~~~~~~~~iRis~~~~~~~e  348 (362)
T 3ffr_A          275 AALINTYIE-SSKV----FSFGVEDAKLRSMTTIVANTTMLPGEINKILEPF-DMAVGAGYGSKKETQIRIANFPAHSLE  348 (362)
T ss_dssp             HHHHHHHHH-HCSS----EEESSSCGGGBCSSEEEEEESSCHHHHHHHHGGG-TEEEEECSGGGTTTEEEEECCTTSCHH
T ss_pred             HHHHHHHHH-HccC----ceeccCChhhcCCceEEEecCCCHHHHHHHHHHC-CeEEecCccccCCCEEEEECCCCCCHH
Confidence            999999999 87 4    4554421    233444322  34 456666665 9999875      2  9998754 889


Q ss_pred             hHHHHHHHHHHHH
Q 012647          443 KCEYLADAIIDSY  455 (459)
Q Consensus       443 ~i~~~~~~l~~~~  455 (459)
                      ++++++++|++++
T Consensus       349 ~i~~l~~~l~~~~  361 (362)
T 3ffr_A          349 QVHKLVQTLKEKI  361 (362)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998764

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.95  E-value=4.2e-27  Score=237.79  Aligned_cols=341  Identities=11%  Similarity=0.016  Sum_probs=203.3

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...+|+..|.+....++.  +|.|.+++.+.++..  ..|.+..+..+.++++++++....+.  ..++|++  |+||+
T Consensus        43 g~~ylD~~~~~~~~~lG~~--~p~v~~A~~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~--~~~~v~~--~~sGs  114 (448)
T 3dod_A           43 GKEYYDGFSSVWLNVHGHR--KKELDDAIKKQLGKI--AHSTLLGMTNVPATQLAETLIDISPK--KLTRVFY--SDSGA  114 (448)
T ss_dssp             SCEEEETTHHHHTCSSCBS--CHHHHHHHHHHHTTC--SCCCCSSSEEHHHHHHHHHHHHHSCT--TEEEEEE--ESSHH
T ss_pred             CCEEEECCcchhhccCCCC--CHHHHHHHHHHHHhc--cCccccccCCHHHHHHHHHHHHhCCC--CCCEEEE--eCchH
Confidence            3568999988764444543  799999999988653  22333334445555556555443321  2478999  99999


Q ss_pred             hHHHHHHHHHHHhC--C----CCEEEEcCCCCcchHHHhhhCCC-------------CeeeeeeecCCCCCC--------
Q 012647          162 GSLRLAAALIERYF--P----GAKVLISSPTWGNHKNIFNDARV-------------PWSEYRYYDPKTVGL--------  214 (459)
Q Consensus       162 ~a~~l~~~~~~~~~--~----gd~Vlv~~p~y~~~~~~~~~~G~-------------~v~~v~~~~~~~~~~--------  214 (459)
                      +|++.+.+++....  +    +|+|++++|+|.++.......+.             .+..+|.  +..+..        
T Consensus       115 eA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  192 (448)
T 3dod_A          115 EAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPI--PYVYRSESGDPDEC  192 (448)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECC--CCCTTSSSCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCC--CccccCCccchhhh
Confidence            99999976664430  3    49999999999876544333222             2334444  222322        


Q ss_pred             ---CHHHHHHHHHcCCCCcEEEEeCCCC-CCCC-CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH
Q 012647          215 ---DFEGMIADIKAAPGGSFILLHGCAH-NPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF  289 (459)
Q Consensus       215 ---d~e~l~~~i~~~~~~~~~ii~~~p~-NPTG-~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~  289 (459)
                         |+++|++.++..+++++++++.+++ |++| .+++++.+++|.++|++||+++|+||+|.+++..+.   ...... 
T Consensus       193 ~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~---~~a~~~-  268 (448)
T 3dod_A          193 RDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK---MFACEH-  268 (448)
T ss_dssp             HHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGG-
T ss_pred             hHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc---hhhhhh-
Confidence               4888999887322356666666666 8888 556888899999999999999999999998875421   111111 


Q ss_pred             HhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHh-------hccccccCCchHHHHHHHHHhCChhh
Q 012647          290 ATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKR-------LARPMYSNPPVHGARIVANVVGNPAL  361 (459)
Q Consensus       290 ~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~L~~~~~  361 (459)
                      .+..+++   .+|||.++ .| +|+||+++   +++    +.+.+..       .....+.+.+.+++.++...|+...-
T Consensus       269 ~~~~~di---~t~sK~l~-~G~~~ig~v~~---~~~----~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~  337 (448)
T 3dod_A          269 ENVQPDL---MAAGKGIT-GGYLPIAVTFA---TED----IYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFES  337 (448)
T ss_dssp             GTCCCSE---EEECGGGG-TTSSCCEEEEE---EHH----HHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCE---EEeccccc-CCcCceEEEEE---CHH----HHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhc
Confidence            1222333   37899998 59 59999876   777    4444433       22233345667777777665542100


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC--C--------------HHHHHHHHhccc
Q 012647          362 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--N--------------KAQSDNMTNKWH  425 (459)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l--~--------------~~~~~~ll~~~g  425 (459)
                          .+.+++.++..+..++.|.+ +. +++.   +....+. |.|+|+.+  +              .++.+.+++ +|
T Consensus       338 ----~~~~~~~~~~~~~~~~~l~~-l~-~~~~---~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G  406 (448)
T 3dod_A          338 ----ENIVEQVAEKSKKLHFLLQD-LH-ALPH---VGDIRQL-GFMCGAELVRSKETKEPYPADRRIGYKVSLKMRE-LG  406 (448)
T ss_dssp             ----TTHHHHHHHHHHHHHHHHHH-HT-TSTT---EEEEEEE-TTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHH-TT
T ss_pred             ----ccHHHHHHHHHHHHHHHHHH-Hh-cCCC---eEEEEee-eEEEEEEEccCcccccccchhhHHHHHHHHHHHH-CC
Confidence                01123333344444444444 44 3321   2233334 44544422  1              345667776 49


Q ss_pred             EEEcCCC---cEEEc-cCChhhHHHHHHHHHHHHhhc
Q 012647          426 VYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       426 I~v~~gg---Ris~~-~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      |.+.|+|   ||+.+ ..+++++++++++|+++++++
T Consensus       407 v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  443 (448)
T 3dod_A          407 MLTRPLGDVIAFLPPLASTAEELSEMVAIMKQAIHEV  443 (448)
T ss_dssp             EECCEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cEEeccCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999976   77533 228999999999999998764

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.95  E-value=5.1e-27  Score=241.32  Aligned_cols=320  Identities=13%  Similarity=0.031  Sum_probs=215.5

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCce--EEeecccchhHHHHHHHHHHHhCCC----
Q 012647          104 DVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRV--ATVQGLSGTGSLRLAAALIERYFPG----  177 (459)
Q Consensus       104 ~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i--~~~~t~ggt~a~~l~~~~~~~~~~g----  177 (459)
                      +.+.+++......+. ..|....+..++++.+++++....|.+.+++++  ++  |+||++++.++.+.+  ..+|    
T Consensus       114 ~~~~~~~~~~~~~~~-~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~--t~ggt~a~~~al~a~--~~~g~~~~  188 (514)
T 3mad_A          114 AFLNEVYALQSQSNP-LHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTV--TSGGTESLLLAMKTY--RDWARATK  188 (514)
T ss_dssp             HHHHHHHHHHTTCCT-TCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEE--ESSHHHHHHHHHHHH--HHHHHHHH
T ss_pred             HHHHHHHHHHhhcCC-cccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEE--cCcHHHHHHHHHHHH--HHHhhhhc
Confidence            444555554443332 455555677788888877777666765555788  78  999999999985444  3344    


Q ss_pred             ----CEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHH
Q 012647          178 ----AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEK  253 (459)
Q Consensus       178 ----d~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~  253 (459)
                          |+|+++.|+|..+...++..|++++.+|++  .++.+|+++|++++++   +++++++++|+||||.+.   ++++
T Consensus       189 g~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~Le~~i~~---~~~~v~~~~~~nptG~~~---~l~~  260 (514)
T 3mad_A          189 GITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLD--ADYRADVAAMREAITP---NTVVVAGSAPGYPHGVVD---PIPE  260 (514)
T ss_dssp             CCSSCEEEEETTSCTHHHHHHHHHTCEEEEECBC--TTSCBCHHHHHHHCCT---TEEEEEEETTCTTTCCCC---CHHH
T ss_pred             CCCCCeEEEeCccchHHHHHHHHcCCeeEEeeeC--CCCCCCHHHHHHHhcc---CCEEEEEeCCCCCCcccc---CHHH
Confidence                899999999999999999999999999994  3788999999999976   788999999999999995   4788


Q ss_pred             HHHHHHhcCCeeEEeccCCCCCCC---CCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHH
Q 012647          254 IADVIQEKNHIPFFDVAYQGFASG---SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVK  330 (459)
Q Consensus       254 i~~l~~~~~~~ii~Deay~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~  330 (459)
                      |.++|++||+++|+|++|.++...   ........+.  ....+.++++.|++|.++ +|.++|++++  +++.    +.
T Consensus       261 i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~--~~~~g~d~~~~s~~K~l~-~~~~~g~~~~--~~~~----~~  331 (514)
T 3mad_A          261 IAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFD--FRLEGVTSVSADTHKYGY-GAKGTSVILY--RRPD----LL  331 (514)
T ss_dssp             HHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCS--TTSTTCCEEEECTTTTTC-CCSSCEEEEE--SSHH----HH
T ss_pred             HHHHHHHhCCeEEEecccccccchhHHhcCCCCCccc--ccCCCCcEEEECchhccC-CCCCeEEEEE--eCHH----Hh
Confidence            999999999999999999877531   0000000000  012235788899999965 6788999954  4443    21


Q ss_pred             HHHHhhc---------ccc-ccCCchH---HHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Q 012647          331 SQLKRLA---------RPM-YSNPPVH---GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDW  397 (459)
Q Consensus       331 ~~~~~~~---------~~~-~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~  397 (459)
                      .......         ... ..+.+..   ++.++...+.        .+.+++..+++.++++++.+.|+ +++   ++
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~--------~~~~~~~~~~~~~~~~~l~~~L~-~~~---g~  399 (514)
T 3mad_A          332 HYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLG--------EEGYLDATRRILQAADRLKAGVR-AIP---SL  399 (514)
T ss_dssp             TTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH-TST---TC
T ss_pred             ccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHHh-hCC---Ce
Confidence            1110000         000 1122222   2233322222        23357788888899999999999 762   15


Q ss_pred             ccccCCcceeeec--CCCH-HHHHHHHhcccEEEcCC---C--cEEEccC--ChhhHHHHHHHHHHHHhhc
Q 012647          398 SFILRQIGMFSFT--GLNK-AQSDNMTNKWHVYMTKD---G--RISLAGL--SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       398 ~~~~~~~g~f~~~--~l~~-~~~~~ll~~~gI~v~~g---g--Ris~~~~--~~e~i~~~~~~l~~~~~~~  458 (459)
                      ++..+..+++.+.  +.+. ++.+.|.+ +||.+...   +  |++++..  +++++++++++|+++++++
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~  469 (514)
T 3mad_A          400 KILGDPLWVIAVASDELNIYQVMEEMAG-RGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQV  469 (514)
T ss_dssp             EESSCCSSEEEEECSSSCHHHHHHHHHT-TTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCeEEEEEeCCCCCHHHHHHHHHh-cCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            6666665544442  3444 44556655 59987321   1  8888733  5689999999999998753

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.95  E-value=1.8e-26  Score=232.10  Aligned_cols=328  Identities=12%  Similarity=0.097  Sum_probs=210.1

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCC--CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...+||..|.+....++  .+|.+.+++.+.++....  ..| +.....++++.+++++.        .++|++  ++|
T Consensus        64 G~~ylD~~~g~~~~~lgh--~~p~v~~ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~g--------~~~v~~--~~s  130 (433)
T 1z7d_A           64 DKRYYDFLSAYSSVNQGH--CHPNILNAMINQAKNLTICSRAF-FSVPLGICERYLTNLLG--------YDKVLM--MNT  130 (433)
T ss_dssp             CCEEEESSHHHHTTTTCB--TCHHHHHHHHHHHTTCSCCCTTS-EEHHHHHHHHHHHHHHT--------CSEEEE--ESS
T ss_pred             CCEEEEcccchhhcccCC--CCHHHHHHHHHHHHhCCCccCCc-CCHHHHHHHHHHHhhcC--------CCeEEE--eCC
Confidence            346889998865222232  378999999998865321  123 34455678888888752        478999  999


Q ss_pred             chhHHHHHHHHHHHh-------CCC-CEEEEcCCCCcchHH-HhhhCC------------CCeeeeeeecCCCCCCCHHH
Q 012647          160 GTGSLRLAAALIERY-------FPG-AKVLISSPTWGNHKN-IFNDAR------------VPWSEYRYYDPKTVGLDFEG  218 (459)
Q Consensus       160 gt~a~~l~~~~~~~~-------~~g-d~Vlv~~p~y~~~~~-~~~~~G------------~~v~~v~~~~~~~~~~d~e~  218 (459)
                      |++|++++.+++..+       .+| |+|++++|+|..+.. .+...|            .+++.+|.       .|++.
T Consensus       131 GseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~  203 (433)
T 1z7d_A          131 GAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-------DDLEA  203 (433)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT-------TCHHH
T ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC-------CCHHH
Confidence            999999986654322       367 999999999987643 333333            23444443       28999


Q ss_pred             HHHHHHcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEE
Q 012647          219 MIADIKAAPGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (459)
Q Consensus       219 l~~~i~~~~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i  297 (459)
                      ++++++.  +++++++++..+|+||.+ ++++++++|.++|++||+++|+||+|.+++..+.   ...... .+..++++
T Consensus       204 le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~---~~~~~~-~~~~~di~  277 (433)
T 1z7d_A          204 LEEELKD--PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK---LLCVHH-YNVKPDVI  277 (433)
T ss_dssp             HHHHHTS--TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGG-GTCCCSEE
T ss_pred             HHHHhCC--CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCc---chhhHh-cCCCCCEE
Confidence            9999952  367777766667889975 7889999999999999999999999987764321   111111 12223433


Q ss_pred             EEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012647          298 VAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI  376 (459)
Q Consensus       298 ~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~  376 (459)
                         ||||.++ +| +|+||+++   +++    +.+.+.......+.+.+.+++.++...|+..      .+  +...+++
T Consensus       278 ---t~sK~l~-~G~~~~G~v~~---~~~----~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~------~~--~~~~~~~  338 (433)
T 1z7d_A          278 ---LLGKALS-GGHYPISAVLA---NDD----IMLVIKPGEHGSTYGGNPLAASICVEALNVL------IN--EKLCENA  338 (433)
T ss_dssp             ---EECGGGG-TTSSCCEEEEE---CHH----HHTTCCTTCCCCTTTTCHHHHHHHHHHHHHH------HH--TTHHHHH
T ss_pred             ---EECcccc-CCCCCeEEEEE---CHH----HHhhhccccccccCCCCHHHHHHHHHHHHHH------Hh--ccHHHHH
Confidence               8999999 89 99999976   777    3333332222233355666666665554311      11  2456677


Q ss_pred             HHHHHHHHHHHhhcc--CCCCCcccccCCcceeeecCC-----CH-HHHHHHHhcccEEEcCCC----cEEEcc-CChhh
Q 012647          377 KNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKDG----RISLAG-LSLAK  443 (459)
Q Consensus       377 ~~~~~~l~~~L~~~~--g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~gg----Ris~~~-~~~e~  443 (459)
                      +++++++.+.|+ ++  +.|. +....+. |.|+|+.+     +. ++.+.|++ +||.+.|++    ||+++. .++++
T Consensus       339 ~~~~~~l~~~L~-~l~~~~~~-~~~~~~~-g~~~~i~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~iRi~~~~~~t~e~  414 (433)
T 1z7d_A          339 EKLGGPFLENLK-RELKDSKI-VRDVRGK-GLLCAIEFKNELVNVLDICLKLKE-NGLITRDVHDKTIRLTPPLCITKEQ  414 (433)
T ss_dssp             HHHHHHHHHHHH-HHHTTCTT-EEEEEEE-TTEEEEEECTTTCCHHHHHHHHHH-TTEECCEETTTEEEECCCTTCCHHH
T ss_pred             HHHHHHHHHHHH-HHHHhCCC-eEEEEee-eeEEEEEEccChhHHHHHHHHHHH-CCeEEecCCCCEEEEECCcCCCHHH
Confidence            778888888887 65  4321 1223334 44555432     23 45667766 599999853    887653 38999


Q ss_pred             HHHHHHHHHHHHhhc
Q 012647          444 CEYLADAIIDSYHNV  458 (459)
Q Consensus       444 i~~~~~~l~~~~~~~  458 (459)
                      +++++++|+++++++
T Consensus       415 i~~~l~~l~~~l~~~  429 (433)
T 1z7d_A          415 LDECTEIIVKTVKFF  429 (433)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988764

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.95  E-value=2.6e-26  Score=230.32  Aligned_cols=323  Identities=14%  Similarity=0.011  Sum_probs=206.1

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      ...+||+.|.+.+..++  .+|.|.+++.+.++......| +..-..++++.+++++.       .+++|++  ++||++
T Consensus        52 ~~~iD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~-------~~~~v~~--~~~g~e  119 (424)
T 2e7u_A           52 NRYLDYVMSWGPLILGH--AHPKVLARVRETLERGLTFGA-PSPLEVALAKKVKRAYP-------FVDLVRF--VNSGTE  119 (424)
T ss_dssp             CEEEESSGGGTTCTTCB--TCHHHHHHHHHHHHTCSCCSS-CCHHHHHHHHHHHHHCT-------TCCEEEE--ESSHHH
T ss_pred             CEEEEccccccccccCC--CCHHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHhCC-------CCCEEEE--eCCHHH
Confidence            46789998875333344  379999999998866422334 33334566666666532       2688999  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh-h-------------CCC------CeeeeeeecCCCCCCCHHHHHHH
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-D-------------ARV------PWSEYRYYDPKTVGLDFEGMIAD  222 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~-------------~G~------~v~~v~~~~~~~~~~d~e~l~~~  222 (459)
                      ++.++.++...+.++++|++.+|+|..+...+. .             .|+      +++.+|.       .|++.+++.
T Consensus       120 a~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~  192 (424)
T 2e7u_A          120 ATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-------NDPEGLREV  192 (424)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-------TCHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-------CCHHHHHHH
Confidence            999986654345567899999999987654322 1             122      2333332       389999999


Q ss_pred             HHcCCCCcEEEEeCCCCCC-CCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEE
Q 012647          223 IKAAPGGSFILLHGCAHNP-TGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (459)
Q Consensus       223 i~~~~~~~~~ii~~~p~NP-TG~~~-s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  300 (459)
                      +++.++++++++ ++|+|+ ||.++ +++.+++|.++ ++||+++|+||+|.++..+    ..... ......++++   
T Consensus       193 l~~~~~~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g----~~~~~-~~~~~~~di~---  262 (424)
T 2e7u_A          193 LKRRGEEIAAII-FEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLA----FGGAT-ELLGLKPDLV---  262 (424)
T ss_dssp             HHHHGGGEEEEE-ECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSS----TTHHH-HHHTCCCSEE---
T ss_pred             HHhCCCCEEEEE-EeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccc----hhHHH-HHhCCCcchh---
Confidence            874212455555 466655 89754 79999999999 9999999999999988432    11222 1223334433   


Q ss_pred             cCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhc---cccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012647          301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLA---RPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  377 (459)
Q Consensus       301 S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  377 (459)
                      ||||.++ +|+|+||+++   +++    +.+.+....   ...+.+.+.+++.++...|+..      .+ .++..++++
T Consensus       263 s~sK~l~-~G~~~G~~~~---~~~----~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~------~~-~~~~~~~~~  327 (424)
T 2e7u_A          263 TLGKILG-GGLPAAAYAG---RRE----IMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELL------EE-NPGYYAYLE  327 (424)
T ss_dssp             EECGGGG-TTSSCEEEEE---CHH----HHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHH------HH-CTHHHHHHH
T ss_pred             hhhhhhh-CCcceEEEEE---cHH----HHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHH------Hh-ccHHHHHHH
Confidence            9999999 5999999976   777    333333211   1122255666666665554311      11 134566777


Q ss_pred             HHHHHHHHHHhhcc----CCCCCcccccCCcceeeecCCC------------------HHHHHHHHhcccEEEcCCC--c
Q 012647          378 NVRQKLFDSLSAKD----KSGKDWSFILRQIGMFSFTGLN------------------KAQSDNMTNKWHVYMTKDG--R  433 (459)
Q Consensus       378 ~~~~~l~~~L~~~~----g~~~~~~~~~~~~g~f~~~~l~------------------~~~~~~ll~~~gI~v~~gg--R  433 (459)
                      ++++++.+.|+ ++    +.   ...+.+. |.|+|+.+.                  .++.+.|++ +||.+.+++  |
T Consensus       328 ~~~~~l~~~L~-~~~~~~~~---~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~  401 (424)
T 2e7u_A          328 DLGARLEAGLK-EVLKEKGL---PHTVNRV-GSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLD-RGIYWPPSNFEA  401 (424)
T ss_dssp             HHHHHHHHHHH-HHHHHTTC---CCEEEEE-TTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHT-TTEECCSSSSSC
T ss_pred             HHHHHHHHHHH-HHHHhCCC---ceEEEee-ceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHH-CCeEEeccCCCc
Confidence            77777777776 53    42   1123444 446665432                  134556665 699999986  5


Q ss_pred             EEEcc-CChhhHHHHHHHHHHHH
Q 012647          434 ISLAG-LSLAKCEYLADAIIDSY  455 (459)
Q Consensus       434 is~~~-~~~e~i~~~~~~l~~~~  455 (459)
                      +.+.. .+++++++++++|++++
T Consensus       402 ~~~~~~~t~~~i~~~l~~l~~~l  424 (424)
T 2e7u_A          402 AFLSVAHREEDVEKTLEALRKAL  424 (424)
T ss_dssp             EECCTTCCHHHHHHHHHHHHHHC
T ss_pred             eEeeccCCHHHHHHHHHHHHHhC
Confidence            44332 28999999999998763

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.95  E-value=6.5e-26  Score=224.88  Aligned_cols=312  Identities=12%  Similarity=0.022  Sum_probs=211.7

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhH
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (459)
                      ++|+|+.  |       ..++.+.+++.+.+...   .|.+..+..++|+++++++..        +++++  |+||+++
T Consensus         9 ~~i~~~~--p-------~~~~~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~~~~--~~~gt~a   66 (393)
T 1mdo_A            9 DFLPFSR--P-------AMGAEELAAVKTVLDSG---WITTGPKNQELEAAFCRLTGN--------QYAVA--VSSATAG   66 (393)
T ss_dssp             CCBCSCC--C-------CCCHHHHHHHHHHHHHT---CCSSSHHHHHHHHHHHHHHCC--------SEEEE--ESCHHHH
T ss_pred             cccccCC--C-------CCCHHHHHHHHHHHhcC---CcCCChHHHHHHHHHHHHhCC--------CcEEE--ecChHHH
Confidence            4677764  3       23677888988888653   244677899999999999743        36778  8999999


Q ss_pred             HHHHHHHHHH-hCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC
Q 012647          164 LRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (459)
Q Consensus       164 ~~l~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT  242 (459)
                      ++++  +... +.+||+|++++|+|..+...++..|++++.+|++ ++++.+|++.+++++++   +++++++   +|||
T Consensus        67 l~~~--~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~---~~~~v~~---~~~~  137 (393)
T 1mdo_A           67 MHIA--LMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVD-RDTLMVTPEHIEAAITP---QTKAIIP---VHYA  137 (393)
T ss_dssp             HHHH--HHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC-TTTCCBCHHHHHHHCCT---TEEEECC---BCGG
T ss_pred             HHHH--HHHcCCCCCCEEEeCCCccHhHHHHHHHCCCEEEEEecc-CCcCCCCHHHHHHhcCC---CceEEEE---eCCC
Confidence            9998  3333 5699999999999999999999999999999985 34578999999999875   6777775   4699


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCC-CCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGF-ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       243 G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      |..   .++++|.++|+++|+++|+|++|... .+.+   ...      ..  .++++.||||..+++|.|.||++.  .
T Consensus       138 G~~---~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~---~~~------~~--~d~~~~S~~k~K~l~~~~~g~~~~--~  201 (393)
T 1mdo_A          138 GAP---ADLDAIYALGERYGIPVIEDAAHATGTSYKG---RHI------GA--RGTAIFSFHAIKNITCAEGGIVVT--D  201 (393)
T ss_dssp             GCC---CCHHHHHHHHHHHTCCBCEECTTCTTCEETT---EET------TS--SSEEEEECCTTSSSCSSSCEEEEE--S
T ss_pred             CCc---CCHHHHHHHHHHcCCeEEEECccccCCeECC---eec------CC--CCeEEEeCCCCCccccccceEEEe--C
Confidence            998   45888999999999999999998853 3321   111      11  578899999443445568999844  4


Q ss_pred             ChhHHHHHHHHHHhhcc------------ccc--------cCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 012647          322 SSDLAARVKSQLKRLAR------------PMY--------SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQ  381 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~------------~~~--------~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~  381 (459)
                      +++..+.+.........            ..+        ...+.+.+.++...+          +.+++..++.+++++
T Consensus       202 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l----------~~~~~~~~~~~~~~~  271 (393)
T 1mdo_A          202 NPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQL----------QKLDALNARRAAIAA  271 (393)
T ss_dssp             CHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHH----------HTHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence            46755554432111000            000        012333322222222          224556666677888


Q ss_pred             HHHHHHhhccCCCCCccccc-C-----CcceeeecCC-------CHHH-HHHHHhcccEEEcCC----------------
Q 012647          382 KLFDSLSAKDKSGKDWSFIL-R-----QIGMFSFTGL-------NKAQ-SDNMTNKWHVYMTKD----------------  431 (459)
Q Consensus       382 ~l~~~L~~~~g~~~~~~~~~-~-----~~g~f~~~~l-------~~~~-~~~ll~~~gI~v~~g----------------  431 (459)
                      ++.+.|+ +++    +++.. +     .+++++|+.+       +.+. .+.|.+ +||.+.++                
T Consensus       272 ~l~~~L~-~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~~~~~~  345 (393)
T 1mdo_A          272 QYHQAMA-DLP----FQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKT-KGIGTGLHFRAAHTQKYYRERFPT  345 (393)
T ss_dssp             HHHHHHH-TSS----CEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHH-TTBCCBCCCCCGGGSHHHHHHSTT
T ss_pred             HHHHHHh-cCC----cccccCCCCCCCceeEEEEEEecccccccCHHHHHHHHHh-CCCCcccccCccccChhhhccCCc
Confidence            8899998 765    34321 2     3445555533       4444 445554 69988763                


Q ss_pred             ----------C---cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          432 ----------G---RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       432 ----------g---Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                                .   ||++.. .+++++++++++|+++++..
T Consensus       346 ~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~  386 (393)
T 1mdo_A          346 LTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQG  386 (393)
T ss_dssp             CCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred             cCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcC
Confidence                      1   666653 38999999999999988764

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.95  E-value=2.8e-26  Score=229.24  Aligned_cols=321  Identities=11%  Similarity=0.040  Sum_probs=209.3

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCC----C-C--CCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE----Y-L--PIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~----Y-~--~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (459)
                      ++++.|..+.+    +  +.++.+.+++.+.+.......    | .  ......++++.+++++..      ++++|++ 
T Consensus        27 ~~~~yld~~~~----~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~------~~~~v~~-   93 (416)
T 1qz9_A           27 EGVIYLDGNSL----G--ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGA------RDGEVVV-   93 (416)
T ss_dssp             TTCEECCTTTS----C--CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTC------CTTSEEE-
T ss_pred             CCeEeecCCCc----C--CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCC------CcccEEE-
Confidence            35677776654    3  347889999998886421111    1 1  124557788888887533      2678999 


Q ss_pred             ecccchhHHHHHHHHHHHh----CCCCEEE-EcCCCCcchHHHh----hhC--CCCeeeeeeecCCCCCCCHHHHHHHHH
Q 012647          156 QGLSGTGSLRLAAALIERY----FPGAKVL-ISSPTWGNHKNIF----NDA--RVPWSEYRYYDPKTVGLDFEGMIADIK  224 (459)
Q Consensus       156 ~t~ggt~a~~l~~~~~~~~----~~gd~Vl-v~~p~y~~~~~~~----~~~--G~~v~~v~~~~~~~~~~d~e~l~~~i~  224 (459)
                       |+|++++++++...+..+    .+||+|+ ++.++|+.+...+    +..  |++++.+|+         +++++++++
T Consensus        94 -~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------~~~l~~~i~  163 (416)
T 1qz9_A           94 -TDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS---------PEELPQAID  163 (416)
T ss_dssp             -CSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS---------GGGHHHHCS
T ss_pred             -eCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc---------HHHHHHHhC
Confidence             999999998774443223    8899755 4456777554433    223  888888765         688888886


Q ss_pred             cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCc
Q 012647          225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK  304 (459)
Q Consensus       225 ~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  304 (459)
                      +   +++++++++|+||||.+++   +++|.++|++||+++|+|++|.. +...  .   .+..+    +.++++.|+||
T Consensus       164 ~---~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~-g~~~--~---~~~~~----~~d~~~~s~~K  227 (416)
T 1qz9_A          164 Q---DTAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSA-GAVP--V---DLHQA----GADYAIGCTYK  227 (416)
T ss_dssp             T---TEEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTT-TTSC--C---CHHHH----TCSEEEECSSS
T ss_pred             C---CceEEEEeccccCcccccC---HHHHHHHHHHcCCEEEEEccccc-cCcC--C---Chhhc----CCCEEEecCcc
Confidence            5   7889999999999999976   78899999999999999999763 2211  1   12111    24588899999


Q ss_pred             CcccCCCCc-ceEEEEeCChhHHHHHHHHHHh-------------------hccccccCCchHHHHHHHHHhCChhhHHH
Q 012647          305 NLGLYAERI-GAMNVVCSSSDLAARVKSQLKR-------------------LARPMYSNPPVHGARIVANVVGNPALFDE  364 (459)
Q Consensus       305 ~~~~~G~Ri-G~~~~v~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~L~~~~~~~~  364 (459)
                      .++ +|.|+ ||+++   +++..+.+......                   .......+++..++.++...|+...    
T Consensus       228 ~l~-~g~~~~g~l~~---~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~----  299 (416)
T 1qz9_A          228 YLN-GGPGSQAFVWV---SPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFA----  299 (416)
T ss_dssp             TTC-CCTTCCCEEEE---CTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHT----
T ss_pred             cCC-CCCCCeEEEEE---CHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHH----
Confidence            985 67788 99976   66633322211000                   0001112344444444333332100    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcc----CCCCCcccccCC----cceeeecCCC-H-HHHHHHHhcccEEEcCC--C
Q 012647          365 WKAEMEMMAGRIKNVRQKLFDSLSAKD----KSGKDWSFILRQ----IGMFSFTGLN-K-AQSDNMTNKWHVYMTKD--G  432 (459)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~l~~~L~~~~----g~~~~~~~~~~~----~g~f~~~~l~-~-~~~~~ll~~~gI~v~~g--g  432 (459)
                       .+.+++++++++++++++.+.|+ ++    |    +.+..+.    .+.++|+.+. . ++.+.|.+ +||.+...  +
T Consensus       300 -~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~~~~~~~~  372 (416)
T 1qz9_A          300 -QTDMASLRRKSLALTDLFIELVE-QRCAAHE----LTLVTPREHAKRGSHVSFEHPEGYAVIQALID-RGVIGDYREPR  372 (416)
T ss_dssp             -TSCHHHHHHHHHHHHHHHHHHHH-HHHTTSC----CEECSCSSGGGBCSEEEEECTTHHHHHHHHHT-TTEECEEETTT
T ss_pred             -hcCHHHHHHHHHHHHHHHHHHHH-hhccCCC----eEEeCCCCHHHcCCEEEEecCCHHHHHHHHHh-CCcEeccCCCC
Confidence             01256788899999999999998 75    4    4555553    2345666542 3 44556655 69988653  2


Q ss_pred             --cEEEc--cCChhhHHHHHHHHHHHHhh
Q 012647          433 --RISLA--GLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       433 --Ris~~--~~~~e~i~~~~~~l~~~~~~  457 (459)
                        ||+++  ..+++++++++++|++++++
T Consensus       373 ~lRis~~~~~~t~~~i~~~~~~l~~~~~~  401 (416)
T 1qz9_A          373 IMRFGFTPLYTTFTEVWDAVQILGEILDR  401 (416)
T ss_dssp             EEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEeCcccCCCHHHHHHHHHHHHHHHhc
Confidence              99987  35899999999999998875

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.95  E-value=7.6e-27  Score=236.03  Aligned_cols=341  Identities=12%  Similarity=0.016  Sum_probs=205.6

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...+||..|.+....++.  +|.|.+++.+.++..  ..|....+..+.+.++++++....+.. ..++|++  |+||+
T Consensus        60 g~~ylD~~~~~~~~~lGh~--~p~v~~A~~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~--~~sGs  132 (451)
T 3oks_A           60 GNRLIDLGSGIAVTTVGNS--APKVVEAVRSQVGDF--THTCFMVTPYEGYVAVCEQLNRLTPVR-GDKRSAL--FNSGS  132 (451)
T ss_dssp             SCEEEESSHHHHTCTTCTT--CHHHHHHHHHHHTTC--SCCTTTTSCCHHHHHHHHHHHHHSSCC-SSEEEEE--ESSHH
T ss_pred             CCEEEEcCCCccccccCCC--CHHHHHHHHHHHHhc--ccccCCccCCHHHHHHHHHHHHhCCcC-CCCEEEE--eCcHH
Confidence            3568999998764444543  789999999888653  234333344455555555544332211 1468999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCC--------------CCeeeeeeecC--CC-CCC--------CH
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDAR--------------VPWSEYRYYDP--KT-VGL--------DF  216 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G--------------~~v~~v~~~~~--~~-~~~--------d~  216 (459)
                      +|++.+.++......+++|++.+++|.++.......+              ..+..+|+...  .. ++.        ++
T Consensus       133 eA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  212 (451)
T 3oks_A          133 EAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAA  212 (451)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHH
Confidence            9999997665433456899999999987654433221              14455554200  00 011        35


Q ss_pred             HHHHHHHHcC-CCCcEEEEeCCCCCCCC--CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC
Q 012647          217 EGMIADIKAA-PGGSFILLHGCAHNPTG--IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (459)
Q Consensus       217 e~l~~~i~~~-~~~~~~ii~~~p~NPTG--~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~  293 (459)
                      +.+++.+++. .+....++++.|.|++|  ..++++.+++|.++|++||+++|+||+|.+++..+.   .+.... .+..
T Consensus       213 ~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~---~~~~~~-~~~~  288 (451)
T 3oks_A          213 KRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGA---MFACEH-EGID  288 (451)
T ss_dssp             HHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGG-GTCC
T ss_pred             HHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCcccc---chhhhh-cCCC
Confidence            5555555431 11334444456666665  344677799999999999999999999998865431   112211 1222


Q ss_pred             CeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHH
Q 012647          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMA  373 (459)
Q Consensus       294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~  373 (459)
                      ++++   ||||.++. |+|+||+++   +++    +.+.+.......+.+.+.++|.++...|+...      +  +...
T Consensus       289 pdi~---t~sK~l~~-G~~iG~v~~---~~~----~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~------~--~~~~  349 (451)
T 3oks_A          289 PDLI---VTAKGIAG-GLPLSAVTG---RAE----IMDSPHVSGLGGTYGGNPIACAAALATIETIE------S--EGLV  349 (451)
T ss_dssp             CSEE---EECGGGGT-TSSCEEEEE---EHH----HHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHH------H--TTHH
T ss_pred             CCee---eehhhhhC-CcceEEEEE---CHH----HHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHh------h--hhHH
Confidence            3433   89999995 999999866   777    44444333334444677777777766654210      0  1233


Q ss_pred             HHHHHHHHHHHHHHhh---ccCCCCCcccccCCcceeeecCC------------CHHHHHHHHhcccEEEcCCC------
Q 012647          374 GRIKNVRQKLFDSLSA---KDKSGKDWSFILRQIGMFSFTGL------------NKAQSDNMTNKWHVYMTKDG------  432 (459)
Q Consensus       374 ~~~~~~~~~l~~~L~~---~~g~~~~~~~~~~~~g~f~~~~l------------~~~~~~~ll~~~gI~v~~gg------  432 (459)
                      ++++++.+++.+.|++   +++.   +..+.+.| .|+|+.+            ..++.+.+++ +||.+.|+|      
T Consensus       350 ~~~~~~~~~l~~~L~~~~~~~~~---~~~~~~~G-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~~i  424 (451)
T 3oks_A          350 ARAQQIEKIMKDRLGRLQAEDDR---IGDVRGRG-AMIAMELVKAGTTEPDADLTKALCAGAHA-AGVIVLSCGTYGNVV  424 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTT---EEEEEEET-TEEEEEEBSTTSCCBCHHHHHHHHHHHHH-TTEECEEECTTSCEE
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCC---eEEEEEee-EEEEEEEecCccCCCCHHHHHHHHHHHHh-CCcEEecCCCCCCEE
Confidence            4444444444444440   3331   23334444 4544422            1234556666 599998864      


Q ss_pred             cEEEccC-ChhhHHHHHHHHHHHHhh
Q 012647          433 RISLAGL-SLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       433 Ris~~~~-~~e~i~~~~~~l~~~~~~  457 (459)
                      ||+++.. +++++++++++|++++++
T Consensus       425 Ri~~~~~~t~e~i~~~l~~l~~~l~~  450 (451)
T 3oks_A          425 RFLPPLSIGDDLLNEGLDVLEEVLRG  450 (451)
T ss_dssp             EECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            7765533 899999999999999875

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.95  E-value=1.2e-25  Score=228.60  Aligned_cols=345  Identities=9%  Similarity=0.017  Sum_probs=224.1

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...+|+..|.+....+..  +|.|.+++.+.++... +.+ +..+..+.++++++++....+.  ..++|++  ++||+
T Consensus        53 G~~ylD~~s~~~~~~lGh~--~p~v~~A~~~~l~~~~-~~~-~~~~~~~~~~~la~~l~~~~~~--~~~~v~~--~~sGs  124 (476)
T 3i5t_A           53 GRRLIDGPAGMWCAQVGYG--RREIVDAMAHQAMVLP-YAS-PWYMATSPAARLAEKIATLTPG--DLNRIFF--TTGGS  124 (476)
T ss_dssp             CCEEEETTHHHHTCTTCBC--CHHHHHHHHHHHHHCC-CCC-TTTCBCHHHHHHHHHHHTTSST--TCCEEEE--ESSHH
T ss_pred             CCEEEECCCchhhccCCCC--CHHHHHHHHHHHHhcc-Ccc-cCccCCHHHHHHHHHHHhcCCC--CcCEEEE--eCchH
Confidence            4578999998764444543  7899999998886521 222 2245567788888887765532  2568999  99999


Q ss_pred             hHHHHHHHHHHHh------CCCCEEEEcCCCCcchHHHhhhCCCC-------------eeeeeeecC-CCCCCC------
Q 012647          162 GSLRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDARVP-------------WSEYRYYDP-KTVGLD------  215 (459)
Q Consensus       162 ~a~~l~~~~~~~~------~~gd~Vlv~~p~y~~~~~~~~~~G~~-------------v~~v~~~~~-~~~~~d------  215 (459)
                      +|++.+.+++...      ..+++|++.+|+|.++.......+..             +..++.... ..+..|      
T Consensus       125 eA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  204 (476)
T 3i5t_A          125 TAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLD  204 (476)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHH
Confidence            9999997776544      44679999999998876554433322             122222100 001222      


Q ss_pred             --HHHHHHHHHcC-CCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh
Q 012647          216 --FEGMIADIKAA-PGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT  291 (459)
Q Consensus       216 --~e~l~~~i~~~-~~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~  291 (459)
                        +++|++.++.. +++++++++++++|++|. +++++.+++|.++|++||+++|+||+|.+++..+   ..+.......
T Consensus       205 ~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G---~~~~~~~~~~  281 (476)
T 3i5t_A          205 DLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCG---EWFASEKVFG  281 (476)
T ss_dssp             HHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS---SSCHHHHTTC
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccc---CceeeecccC
Confidence              78888888642 135678888888899985 8899999999999999999999999999987543   1223321222


Q ss_pred             cCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhh-------ccccccCCchHHHHHHHHHhCChhhHH
Q 012647          292 RGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRL-------ARPMYSNPPVHGARIVANVVGNPALFD  363 (459)
Q Consensus       292 ~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~L~~~~~~~  363 (459)
                      ..++++   +|||.++ .| +|+|++++   +++    +.+.+...       ....+.+.+.+++.++...|+..    
T Consensus       282 v~pdi~---t~sK~l~-~G~~plg~v~~---~~~----i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~----  346 (476)
T 3i5t_A          282 VVPDII---TFAKGVT-SGYVPLGGLAI---SEA----VLARISGENAKGSWFTNGYTYSNQPVACAAALANIELM----  346 (476)
T ss_dssp             CCCSEE---EECGGGG-TTSSCCEEEEE---CHH----HHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHH----
T ss_pred             CCcchh---hhhhhhc-CCCcCeEEEEE---CHH----HHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHH----
Confidence            334443   6899999 59 99999976   888    44444321       12223356667777766555311    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeee--cCC-------------CHHHHHHHHhcccEEE
Q 012647          364 EWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF--TGL-------------NKAQSDNMTNKWHVYM  428 (459)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~--~~l-------------~~~~~~~ll~~~gI~v  428 (459)
                        .+  +...++++++.+++.+.|+ +++.-+.+..+.+.|.++.+  ...             ..++.+.+++ +||.+
T Consensus       347 --~~--~~~~~~~~~~~~~l~~~L~-~l~~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v  420 (476)
T 3i5t_A          347 --ER--EGIVDQAREMADYFAAALA-SLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFE-LGLIV  420 (476)
T ss_dssp             --HH--TTHHHHHHHHHHHHHHHHH-TTTTSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHHHHHHHHH-TTEEC
T ss_pred             --Hh--HHHHHHHHHHHHHHHHHHH-HHhcCCCeEEEEecCceeEEEEecCccccccccchhHHHHHHHHHHHH-CCCEE
Confidence              01  3455666777777777777 65310113344555554332  111             1234556666 59999


Q ss_pred             cCCC---cEEEc-cCChhhHHHHHHHHHHHHhhc
Q 012647          429 TKDG---RISLA-GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       429 ~~gg---Ris~~-~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      .|.|   ||+.. ..+++++++++++|+++++++
T Consensus       421 ~~~g~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~  454 (476)
T 3i5t_A          421 RPLGDLCVISPPLIISRAQIDEMVAIMRQAITEV  454 (476)
T ss_dssp             EEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9876   77733 239999999999999998753

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.94  E-value=4e-25  Score=221.23  Aligned_cols=316  Identities=16%  Similarity=0.026  Sum_probs=210.0

Q ss_pred             cccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcc----cHHHHHHHHHHHhcCCCCccccCceEEeecccchhHH
Q 012647           89 GVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEG----LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSL  164 (459)
Q Consensus        89 ~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g----~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~  164 (459)
                      +.|.|    ..+++++.+.+++.+.+.......|++..|    ..++++.+++++..       + ++++  +.+|++++
T Consensus         5 ~~g~p----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~-------~-~~i~--~~~gt~al   70 (418)
T 2c81_A            5 FDHWP----EWPQHSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGV-------P-YCVP--TTSGSTAL   70 (418)
T ss_dssp             ---CC----CSSCCCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTC-------S-EEEE--ESCHHHHH
T ss_pred             cCCCC----CCCCCCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCC-------C-cEEE--eCCHHHHH
Confidence            34555    445568999999999886643234777667    67777777777532       2 4555  67789999


Q ss_pred             HHHHHHHHH-hCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCC
Q 012647          165 RLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTG  243 (459)
Q Consensus       165 ~l~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG  243 (459)
                      +++  +... +.+||+|+++.|+|..+...++..|++++.+|++ ++++.+|++.+++++++   +++++++   +||||
T Consensus        71 ~~~--~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~i~~---~~~~v~~---~~~~G  141 (418)
T 2c81_A           71 MLA--LEALGIGEGDEVIVPSLTWIATATAVLNVNALPVFVDVE-ADTYCIDPQLIKSAITD---KTKAIIP---VHLFG  141 (418)
T ss_dssp             HHH--HHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBC-TTTCSBCHHHHGGGCCT---TEEEECC---BCCTT
T ss_pred             HHH--HHHcCCCCcCEEEECCCccHhHHHHHHHcCCEEEEEecC-CCCCCcCHHHHHHhhCC---CCeEEEE---eCCcC
Confidence            998  3333 5699999999999999999999999999999985 34688999999998875   6777774   57999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCC-CCCCCCChhHHHHHHhcCCeEEEEEcC--CcCcccCCCCcceEEEEe
Q 012647          244 IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFA-SGSLDNDASSVRLFATRGMELLVAQSY--SKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       244 ~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~RiG~~~~v~  320 (459)
                      ..   .++++|.++|++||+++|+|++|..+. +++   .  .+    .... .+.+.||  ||.+++ | |.||++  +
T Consensus       142 ~~---~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~---~--~~----~~~~-~~~~~s~s~~K~~~~-g-~~g~~~--~  204 (418)
T 2c81_A          142 SM---ANMDEINEIAQEHNLFVIEDCAQSHGSVWNN---Q--RA----GTIG-DIGAFSCQQGKVLTA-G-EGGIIV--T  204 (418)
T ss_dssp             CC---CCHHHHHHHHHHTTCEEEEECTTCTTCEETT---E--ET----TSSS-SEEEEECCTTSSSCS-S-SCEEEE--E
T ss_pred             Cc---ccHHHHHHHHHHCCCEEEEECcccccCccCC---E--ec----cccc-ceEEEeccCCcccCC-C-CeEEEE--E
Confidence            88   778899999999999999999998775 331   1  11    1111 2666777  999996 8 999984  4


Q ss_pred             CChhHHHHHHHHHHhhccc---------cccC----Cc--------hHHHHHH-HHHhCChhhHHHHHHHHHHHHHHHHH
Q 012647          321 SSSDLAARVKSQLKRLARP---------MYSN----PP--------VHGARIV-ANVVGNPALFDEWKAEMEMMAGRIKN  378 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~---------~~~~----~~--------~~~~~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~  378 (459)
                      .++++.+.+..........         .+..    +.        ...+.+. ...+          +.+++..++.++
T Consensus       205 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l----------~~~~~~~~~~~~  274 (418)
T 2c81_A          205 KNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQL----------QELDDKNAIREK  274 (418)
T ss_dssp             SCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHH----------TTHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence            4567555544322111000         0110    00        0111111 1111          124566677777


Q ss_pred             HHHHHHHHHhhccCCCCCcccc-cCCc-ceeee------c------CCCHH-HHHHHHhcccEE---EcCC---------
Q 012647          379 VRQKLFDSLSAKDKSGKDWSFI-LRQI-GMFSF------T------GLNKA-QSDNMTNKWHVY---MTKD---------  431 (459)
Q Consensus       379 ~~~~l~~~L~~~~g~~~~~~~~-~~~~-g~f~~------~------~l~~~-~~~~ll~~~gI~---v~~g---------  431 (459)
                      +++++.+.|. +++   ++++. .+++ +.+.|      +      +.+.+ +.+.|.+++||.   +.++         
T Consensus       275 ~~~~l~~~L~-~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~  350 (418)
T 2c81_A          275 NAMFLNDALS-KID---GIKVMKRPPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPL  350 (418)
T ss_dssp             HHHHHHHHHT-TST---TEEECCCCTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTT
T ss_pred             HHHHHHHHhc-cCC---CcccCCCCCCCcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCch
Confidence            8888889998 762   14554 3444 22211      2      23444 455666544999   6542         


Q ss_pred             ---------------------------------C--cEEEc-cC-ChhhHHHHHHHHHHHHhhc
Q 012647          432 ---------------------------------G--RISLA-GL-SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       432 ---------------------------------g--Ris~~-~~-~~e~i~~~~~~l~~~~~~~  458 (459)
                                                       +  ||++. .. ++||+++++++|+++++++
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~  414 (418)
T 2c81_A          351 FCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKF  414 (418)
T ss_dssp             CCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred             hcccccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhh
Confidence                                             1  77765 23 7999999999999998765

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.94  E-value=6.4e-26  Score=223.42  Aligned_cols=314  Identities=12%  Similarity=0.058  Sum_probs=211.5

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhH
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (459)
                      ++++|+.|.|    .   +.+ +.+++.+.+...   .|.+..+..++|+++++++..        +++++  ++||+++
T Consensus         7 ~~~~l~~~~~----~---~~~-~~~~~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~~~~--~~~gt~a   65 (374)
T 3uwc_A            7 PYSYLERQFA----D---IEP-YLNDLREFIKTA---DFTLGAELEKFEKRFAALHNA--------PHAIG--VGTGTDA   65 (374)
T ss_dssp             CSCCHHHHTS----S---CHH-HHHHHHHHHHHT---CCSSCHHHHHHHHHHHHHTTC--------SEEEE--ESCHHHH
T ss_pred             eeeccccCCC----C---chH-HHHHHHHHHHcC---CcccChhHHHHHHHHHHHhCC--------CcEEE--eCCHHHH
Confidence            5678888776    2   245 888888877653   577888999999999999643        35777  8999999


Q ss_pred             HHHHHHHHHH-hCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC
Q 012647          164 LRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (459)
Q Consensus       164 ~~l~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT  242 (459)
                      ++++  +... +.+||+|+++.|+|..+...++..|++++.+|++  +++.+|++.+++++++   ++++++   |+|||
T Consensus        66 ~~~~--~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~~---~~~~v~---~~n~~  135 (374)
T 3uwc_A           66 LAMS--FKMLNIGAGDEVITCANTFIASVGAIVQAGATPVLVDSE--NGYVIDPEKIEAAITD---KTKAIM---PVHYT  135 (374)
T ss_dssp             HHHH--HHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC--TTSSBCGGGTGGGCCT---TEEEEC---CBCGG
T ss_pred             HHHH--HHHcCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecC--CCCCcCHHHHHHhCCC---CceEEE---EeCCc
Confidence            9987  4444 5699999999999999999999999999999984  5688999999998875   677666   89999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCC--cCcccCCCCcceEEEEe
Q 012647          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS--KNLGLYAERIGAMNVVC  320 (459)
Q Consensus       243 G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~RiG~~~~v~  320 (459)
                      |.+   .++++|.++|++||+++|+|++|..+...+  ....      ... .++++.|||  |.++.+|. .|++  ++
T Consensus       136 G~~---~~~~~i~~~~~~~~~~li~D~~~~~g~~~~--~~~~------~~~-~d~~~~s~~~~K~l~~~g~-~g~~--~~  200 (374)
T 3uwc_A          136 GNI---ADMPALAKIAKKHNLHIVEDACQTILGRIN--DKFV------GSW-GQFACFSLHPLKNLNVWSD-AGVI--IT  200 (374)
T ss_dssp             GCC---CCHHHHHHHHHHTTCEEEEECTTCTTCEET--TEET------TSS-SSEEEEECSSSSSSCCSSC-CEEE--EE
T ss_pred             CCc---CCHHHHHHHHHHcCCEEEEeCCCccCceeC--Ceec------ccc-ccEEEEeCCCCCcCCccce-eEEE--Ee
Confidence            998   468889999999999999999987643211  1111      111 256778866  99986575 7777  45


Q ss_pred             CChhHHHHHHHHHHhhcc--------ccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          321 SSSDLAARVKSQLKRLAR--------PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                      .+++..+.+.........        ........+.+.+....+          +.+++..++.+++.+++.+.|+ +++
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~----------~~~~~~~~~~~~~~~~l~~~l~-~~~  269 (374)
T 3uwc_A          201 HSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLM----------NQLETITEKRRGIAHLYDQSFV-DLS  269 (374)
T ss_dssp             SCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHG----------GGHHHHHHHHHHHHHHHHHHTG-GGT
T ss_pred             CCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhc-cCC
Confidence            566644443322110000        000011222222221111          1245666777788888888888 764


Q ss_pred             CCCC-cccc-cCCcceeee----c-CCCHHH-HHHHHhcccEEEcCCC-------------------------------c
Q 012647          393 SGKD-WSFI-LRQIGMFSF----T-GLNKAQ-SDNMTNKWHVYMTKDG-------------------------------R  433 (459)
Q Consensus       393 ~~~~-~~~~-~~~~g~f~~----~-~l~~~~-~~~ll~~~gI~v~~gg-------------------------------R  433 (459)
                         + +.+. .+.++...|    + ..+.+. .+.|.+ +||.+.++.                               |
T Consensus       270 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr  345 (374)
T 3uwc_A          270 ---EFIDVPVRREGVYHVFHIYVLRVKYRDQLFQYLKD-NGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVIT  345 (374)
T ss_dssp             ---TTEECCCCCTTEECCCSSEEEEETTHHHHHHHHHH-TTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEE
T ss_pred             ---CeEEeccCCCCCceeeEEEEEEcCCHHHHHHHHHH-CCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEE
Confidence               1 2222 122222222    1 124444 445554 699887751                               5


Q ss_pred             EEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          434 ISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       434 is~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                      |++.. .+++++++++++|++++++.
T Consensus       346 l~~~~~~t~edi~~~~~~l~~~l~~~  371 (374)
T 3uwc_A          346 LPAHPYLTEEEINYIIKKVREFYLEK  371 (374)
T ss_dssp             ECCCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHhh
Confidence            65553 38999999999999998763

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.94  E-value=3e-26  Score=232.64  Aligned_cols=346  Identities=10%  Similarity=-0.003  Sum_probs=215.8

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...+||..|......+..  +|.|.+++.+.++... +.|....+..+.+..+++.+....+  ...++|++  ++||+
T Consensus        54 G~~ylD~~s~~~~~~lGh~--~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~~~lae~l~~~~~--~~~~~v~~--~~sGs  126 (472)
T 3hmu_A           54 GEEILDAMAGLWCVNIGYG--RDELAEVAARQMRELP-YYNTFFKTTHVPAIALAQKLAELAP--GDLNHVFF--AGGGS  126 (472)
T ss_dssp             CCEEECTTHHHHTCTTCBC--CHHHHHHHHHHHHHCS-CCCSSSSEECHHHHHHHHHHHHHSC--TTEEEEEE--ESSHH
T ss_pred             CCEEEECCCchhhccCCCC--CHHHHHHHHHHHHhcc-ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCCHH
Confidence            4578999988664444543  7899999998886532 2333333333444444444433222  12568999  99999


Q ss_pred             hHHHHHHHHHHHh------CCCCEEEEcCCCCcchHHHhhhCCC------------Ceeeeeeec--C-CCCCCC-----
Q 012647          162 GSLRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDARV------------PWSEYRYYD--P-KTVGLD-----  215 (459)
Q Consensus       162 ~a~~l~~~~~~~~------~~gd~Vlv~~p~y~~~~~~~~~~G~------------~v~~v~~~~--~-~~~~~d-----  215 (459)
                      ++++.+.+++...      .++++|++.+|+|.++.......+.            .+..+|...  . .++ .|     
T Consensus       127 eA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~  205 (472)
T 3hmu_A          127 EANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFG  205 (472)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHH
Confidence            9999997776543      2468999999999877554443332            233444310  0 111 34     


Q ss_pred             ---HHHHHHHHHcC-CCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH
Q 012647          216 ---FEGMIADIKAA-PGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA  290 (459)
Q Consensus       216 ---~e~l~~~i~~~-~~~~~~ii~~~p~NPTG~~~-s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~  290 (459)
                         ++.|++.+++. +++++++++.+++|++|.+. +++.+++|.++|++||+++|+||+|.+++..+   ..+.... .
T Consensus       206 ~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G---~~~a~~~-~  281 (472)
T 3hmu_A          206 LARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTG---NWFGTQT-M  281 (472)
T ss_dssp             HHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS---SSCHHHH-H
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccC---ccchhHH-h
Confidence               78888888632 13567777777788888755 88889999999999999999999999987543   1223322 2


Q ss_pred             hcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012647          291 TRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME  370 (459)
Q Consensus       291 ~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~  370 (459)
                      +..++++   +|||.++..|+|+||+++   +++.++.+ .. .......+.+.+.+++.++...|+..      ++  +
T Consensus       282 ~v~pdi~---t~sK~l~gg~~plG~v~~---~~~i~~~~-~~-~~~~~~~t~~~np~a~aAa~aaL~~~------~~--~  345 (472)
T 3hmu_A          282 GIRPHIM---TIAKGLSSGYAPIGGSIV---CDEVAHVI-GK-DEFNHGYTYSGHPVAAAVALENLRIL------EE--E  345 (472)
T ss_dssp             TCCCSEE---EECGGGTTTSSCCEEEEE---EHHHHHHH-TT-SCBCCCCTTTTCHHHHHHHHHHHHHH------HH--T
T ss_pred             CCCCcee---eechhhhcCCcceEEEEE---CHHHHHhc-cc-CCccccCCCCCCHHHHHHHHHHHHHH------HH--h
Confidence            3334444   689999855599999976   77744433 10 11122223356667777776555311      00  2


Q ss_pred             HHHHHHH-HHHHHHHHHHhhccC-CCCCcccccCCcceeeec--CC--------------CHHHHHHHHhcccEEEcCCC
Q 012647          371 MMAGRIK-NVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFT--GL--------------NKAQSDNMTNKWHVYMTKDG  432 (459)
Q Consensus       371 ~~~~~~~-~~~~~l~~~L~~~~g-~~~~~~~~~~~~g~f~~~--~l--------------~~~~~~~ll~~~gI~v~~gg  432 (459)
                      ...++++ ++.+++.+.|+ ++. .| .+..+.+.|.++.+.  ..              ..++.+.|++ +||.+.++|
T Consensus       346 ~~~~~~~~~~~~~l~~~L~-~l~~~~-~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~g  422 (472)
T 3hmu_A          346 NILDHVRNVAAPYLKEKWE-ALTDHP-LVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFA-NNLIMRHVG  422 (472)
T ss_dssp             THHHHHHHTHHHHHHHHHH-GGGGST-TEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHH-TTBCCEEET
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHhcCC-CeEEEEecCceEEEEEecCccccccccchhHHHHHHHHHHHHH-CCcEEEecC
Confidence            3445555 56666666665 542 11 133445555544331  11              1234566666 599999876


Q ss_pred             ---cEEEc-cCChhhHHHHHHHHHHHHhhc
Q 012647          433 ---RISLA-GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       433 ---Ris~~-~~~~e~i~~~~~~l~~~~~~~  458 (459)
                         ||+.. ..+++++++++++|+++++++
T Consensus       423 ~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~  452 (472)
T 3hmu_A          423 DRMIISPPLVITPAEIDEMFVRIRKSLDEA  452 (472)
T ss_dssp             TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence               77732 239999999999999988753

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.94  E-value=3.6e-26  Score=230.96  Aligned_cols=340  Identities=11%  Similarity=0.000  Sum_probs=217.8

Q ss_pred             CCceeecccccCCCCCCccCcHHHH-H-HHHH---HhhcCCC--CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVK-K-AENL---MLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~-~-a~~~---~~~~~~~--~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (459)
                      ...+|+..|.+...-++.  +|.|. + ++.+   .+.....  ..| +.....++++.+++++..     ..+++|++ 
T Consensus        54 ~~ylD~~~~~~~~~lG~~--~p~v~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~la~~la~~~~~-----~~~~~v~~-  124 (449)
T 2cjg_A           54 RRYLDMFTFVASSALGMN--PPALVDDREFHAELMQAALNKPSNSDV-YSVAMARFVETFARVLGD-----PALPHLFF-  124 (449)
T ss_dssp             CEEEESSHHHHTCSSCBS--CHHHHTCHHHHHHHHHHHTCCCCTTTC-CCHHHHHHHHHHHHHHCC-----TTCCEEEE-
T ss_pred             cEEEEccCCccccCCCCC--CHHHHHHHHHHHHHHHHHhcCCCCccc-CCHHHHHHHHHHHHhcCC-----CCCCEEEE-
Confidence            467899888763333432  78898 8 8888   6654311  123 334456788888887641     22688999 


Q ss_pred             ecccchhHHHHHHHHHHHhC------------CCCEEEEcCCCCcchHHHhh-hCC--------C-----CeeeeeeecC
Q 012647          156 QGLSGTGSLRLAAALIERYF------------PGAKVLISSPTWGNHKNIFN-DAR--------V-----PWSEYRYYDP  209 (459)
Q Consensus       156 ~t~ggt~a~~l~~~~~~~~~------------~gd~Vlv~~p~y~~~~~~~~-~~G--------~-----~v~~v~~~~~  209 (459)
                       ++||++|++.+.+++..+.            +||+|++.+|+|.++..... ..|        .     +++.+|..++
T Consensus       125 -~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  203 (449)
T 2cjg_A          125 -VEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRP  203 (449)
T ss_dssp             -ESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCT
T ss_pred             -eCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCc
Confidence             9999999999976553322            28999999999987644322 222        1     4555665320


Q ss_pred             CCC--------CCCHHHHHHHHHcCCCCcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCC
Q 012647          210 KTV--------GLDFEGMIADIKAAPGGSFILLHGCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (459)
Q Consensus       210 ~~~--------~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG-~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~  280 (459)
                      ...        ..+++.|++.+++..+++++++++.++|||| .+++++.+++|.++|++||+++|+||+|.+++..+. 
T Consensus       204 ~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~-  282 (449)
T 2cjg_A          204 GLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGT-  282 (449)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-
T ss_pred             hhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCc-
Confidence            011        2456678888874334677877766689999 599999999999999999999999999998875431 


Q ss_pred             CChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHH-HHHhhccccccCCchHHHHHHHHHhCCh
Q 012647          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKS-QLKRLARPMYSNPPVHGARIVANVVGNP  359 (459)
Q Consensus       281 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~~  359 (459)
                        .+.... .+..++++   ||||.+     |+||+++   ++++++.+.. .+.......+.+.+.+++.++...|+..
T Consensus       283 --~~~~~~-~~~~~di~---t~sK~l-----~iG~~~~---~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~  348 (449)
T 2cjg_A          283 --AWAYQQ-LDVAPDIV---AFGKKT-----QVCGVMA---GRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVI  348 (449)
T ss_dssp             --SSTHHH-HTCCCSEE---EECGGG-----SSEEEEE---CGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHH
T ss_pred             --ceeecc-cCCCceEE---EecCcc-----cEEEEEE---CHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHH
Confidence              122222 23334433   789987     6999966   6673332110 0111122223356677777776555311


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCCcccccCCcceeeecCCC-----HHHHHHHHhcccEEEcCCC
Q 012647          360 ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKDG  432 (459)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--g~~~~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~gg  432 (459)
                            .+  +...++++++++++.+.|+ ++  ++|..+....+.|.++ ++.+.     .++++.|++ +||.+.++|
T Consensus       349 ------~~--~~~~~~~~~~~~~l~~~L~-~l~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~l~~-~Gv~v~~~g  417 (449)
T 2cjg_A          349 ------EA--EGLFERAVQHGKYLRARLD-ELAADFPAVVLDPRGRGLMC-AFSLPTTADRDELIRQLWQ-RAVIVLPAG  417 (449)
T ss_dssp             ------HH--HTHHHHHHHHHHHHHHHHH-HHHHHSTTTSEEEEEETTEE-EEECSSHHHHHHHHHHHHH-TTEECEEET
T ss_pred             ------Hh--ccHHHHHHHHHHHHHHHHH-HHHhhCCCceeeEeeccEEE-EEEECChHHHHHHHHHHHH-CCeEEecCC
Confidence                  11  2455677778888888887 64  2211123344555544 44542     345667776 699999875


Q ss_pred             ----cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012647          433 ----RISLAG-LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       433 ----Ris~~~-~~~e~i~~~~~~l~~~~~~~  458 (459)
                          ||+++. .+++++++++++|+++++++
T Consensus       418 ~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  448 (449)
T 2cjg_A          418 ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV  448 (449)
T ss_dssp             TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence                886543 28999999999999998875

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.94  E-value=5.5e-26  Score=225.45  Aligned_cols=311  Identities=14%  Similarity=0.022  Sum_probs=205.5

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC-CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL-PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~-~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +++++++.|.|       .+++.+.+++.+.+..+   .|. +..+..++|+++++++..        +++++  ++||+
T Consensus        22 ~~~~~l~~~~p-------~~~~~~~~a~~~~~~~~---~~~~~~~~~~~l~~~la~~~~~--------~~~i~--~~~gt   81 (391)
T 3dr4_A           22 SDLPRISVAAP-------RLDGNERDYVLECMDTT---WISSVGRFIVEFEKAFADYCGV--------KHAIA--CNNGT   81 (391)
T ss_dssp             ------CCCCC-------CCCSSHHHHHHHHHHHT---CCSSCSHHHHHHHHHHHHHHTC--------SEEEE--ESSHH
T ss_pred             CCCceeccCCC-------CCCHHHHHHHHHHHHcC---CccCCChHHHHHHHHHHHHhCC--------CcEEE--eCCHH
Confidence            46788888876       23678888888887653   455 678999999999999743        35677  89999


Q ss_pred             hHHHHHHHHHHH-hCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          162 GSLRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       162 ~a~~l~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      +++.++  +... +.+||+|+++.|+|..+...++..|++++.++++ ++++.+|++.+++++++   ++++++   ++|
T Consensus        82 ~al~~~--l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~~~~---~~~~v~---~~n  152 (391)
T 3dr4_A           82 TALHLA--LVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDND-PRTFNLDAAKLEALITP---RTKAIM---PVH  152 (391)
T ss_dssp             HHHHHH--HHHHTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBC-TTTCSBCGGGSGGGCCT---TEEEEC---CBC
T ss_pred             HHHHHH--HHHcCCCCcCEEEECCCchHHHHHHHHHCCCEEEEEecC-ccccCcCHHHHHHhcCC---CceEEE---EEC
Confidence            999998  4444 5799999999999999999999999999999985 35688999999998875   677776   578


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCC-CCCCCCChhHHHHHHhcCCeEEEEEcCC--cCcccCCCCcceEE
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFA-SGSLDNDASSVRLFATRGMELLVAQSYS--KNLGLYAERIGAMN  317 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~RiG~~~  317 (459)
                      |||..   .++++|.++|++||+++|+|++|.... +.+  .   .    .... ..+.+.|||  |.++  |.+.|++ 
T Consensus       153 ~tG~~---~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~--~---~----~~~~-~di~~~S~s~~K~l~--~g~gg~~-  216 (391)
T 3dr4_A          153 LYGQI---CDMDPILEVARRHNLLVIEDAAEAVGATYRG--K---K----SGSL-GDCATFSFFGNAIIT--TGEGGMI-  216 (391)
T ss_dssp             GGGCC---CCHHHHHHHHHHTTCEEEEECTTCTTCEETT--E---E----TTSS-SSEEEEECBTTSSSC--CBSCEEE-
T ss_pred             CCCCh---hhHHHHHHHHHHcCCEEEEECcccccceECC--e---e----eccc-CCEEEEECCCCCcCC--cCCeEEE-
Confidence            99998   668889999999999999999987533 211  0   0    0111 136667766  6664  4568887 


Q ss_pred             EEeCChhHHHHHHHHHHhhcc----------ccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          318 VVCSSSDLAARVKSQLKRLAR----------PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSL  387 (459)
Q Consensus       318 ~v~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  387 (459)
                       ++.+++..+.+.........          ........+.+.+....          .+.+++..++.+++.+++.+.|
T Consensus       217 -~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~----------~~~~~~~~~~~~~~~~~l~~~L  285 (391)
T 3dr4_A          217 -TTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQ----------LERVDEHLAARERVVGWYEQKL  285 (391)
T ss_dssp             -EESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHH----------HHTHHHHHHHHHHHHHHHHHHH
T ss_pred             -EECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHh
Confidence             45666644444332211000          00012222222221111          1224566777788888999999


Q ss_pred             hhccCCCCCcccccC------Cccee-eec------CCCHHH-HHHHHhcccEEEcCCC---------------------
Q 012647          388 SAKDKSGKDWSFILR------QIGMF-SFT------GLNKAQ-SDNMTNKWHVYMTKDG---------------------  432 (459)
Q Consensus       388 ~~~~g~~~~~~~~~~------~~g~f-~~~------~l~~~~-~~~ll~~~gI~v~~gg---------------------  432 (459)
                      + ++|    +.+..+      ..+++ +++      +.+.+. .+.|.+ +||.+.++.                     
T Consensus       286 ~-~~g----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~-~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~  359 (391)
T 3dr4_A          286 A-RLG----NRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDA-LGIESRPVFHPMHIMPPYAHLATDDLKIAE  359 (391)
T ss_dssp             G-GGT----TSEECCCCCTTSCCCCSSEEEEECSSCSSCHHHHHHHHHH-TTCCCEECCCCGGGSGGGGGGCCTTCHHHH
T ss_pred             h-cCC----ccccCcCCCCCCcceeEEEEEEECCccchhHHHHHHHHHH-CCCceeecCCccccChhhhhcCcCCChHHH
Confidence            8 775    343333      12221 122      234544 555555 699887661                     


Q ss_pred             -------cEEEcc-CChhhHHHHHHHHHHHH
Q 012647          433 -------RISLAG-LSLAKCEYLADAIIDSY  455 (459)
Q Consensus       433 -------Ris~~~-~~~e~i~~~~~~l~~~~  455 (459)
                             ||++.. .++||+++++++|++++
T Consensus       360 ~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l  390 (391)
T 3dr4_A          360 ACGVDGLNLPTHAGLTEADIDRVIAALDQVL  390 (391)
T ss_dssp             HHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred             HHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence                   565543 48999999999998764

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.94  E-value=1.9e-26  Score=233.03  Aligned_cols=314  Identities=13%  Similarity=0.093  Sum_probs=197.6

Q ss_pred             Cceeeccc-ccCCCCCCccCcHHHHHHHHHH---hhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           84 KKLNLGVG-AYRTEELQPYVLDVVKKAENLM---LERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        84 ~~i~l~~g-~~~~~~~~~~~~~~v~~a~~~~---~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      ++|+|+.| .+    .++. ++.|.++....   ......+.|+ ..|.+ +++++++++...+|.    +++++  +.+
T Consensus        90 ~~i~l~~g~~~----~~~~-~~~i~~a~~~~~~~~~~~~~~~Y~-~~g~~-~~~~l~~~la~~~g~----~~~i~--~~s  156 (464)
T 1ibj_A           90 LLVNLDNKFDP----FDAM-STPLYQTATFKQPSAIENGPYDYT-RSGNP-TRDALESLLAKLDKA----DRAFC--FTS  156 (464)
T ss_dssp             HHTCCCCSSCT----TCCS-SCCCCCCSBCCCSSSSCCCSCSBT-TTCCH-HHHHHHHHHHHHHTC----SEEEE--ESS
T ss_pred             eEEECCCCCCC----CCCC-CccHHhhhhhhhhcccccCCcccc-CCCCH-HHHHHHHHHHHHhCC----CeEEE--ECC
Confidence            57888887 44    2222 44455544432   1112235675 34544 556666555444342    36666  788


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEe
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~  235 (459)
                      |+++++++.   ..+.+||+|++++|+|..+...    ++..|++++.+|..       |++++++++++   +++++++
T Consensus       157 Gt~al~~~l---~~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-------d~~~l~~~i~~---~tk~v~l  223 (464)
T 1ibj_A          157 GMAALSAVT---HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT-------KLDEVAAAIGP---QTKLVWL  223 (464)
T ss_dssp             HHHHHHHHH---TTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT-------SHHHHHHHCCS---SEEEEEE
T ss_pred             HHHHHHHHH---HHhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC-------CHHHHHHHhcc---CceEEEE
Confidence            899988762   3467999999999999988754    46779999988762       88999999875   7899999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc-CCCCcc
Q 012647          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL-YAERIG  314 (459)
Q Consensus       236 ~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-~G~RiG  314 (459)
                      ++|+||||.++   ++++|+++|++||+++|+||+|......    .  .+    . .+.++++.|+||.++. +|+|+|
T Consensus       224 ~~p~NptG~v~---~l~~i~~la~~~gi~livDea~~~g~~~----~--~~----~-~~~div~~S~sK~~~g~~Gl~~G  289 (464)
T 1ibj_A          224 ESPTNPRQQIS---DIRKISEMAHAQGALVLVDNSIMSPVLS----R--PL----E-LGADIVMHSATKFIAGHSDVMAG  289 (464)
T ss_dssp             CSSCTTTCCCC---CHHHHHHHHHTTTCEEEEECTTTCTTTC----C--GG----G-TTCSEEEEETTTTTTCSSCCCCE
T ss_pred             eCCCCCCCEee---cHHHHHHHHHHcCCEEEEECCCcccccC----C--hh----h-cCCEEEEECCcccccCCCCCcEE
Confidence            99999999997   4888999999999999999998653211    0  11    1 3578999999998864 489999


Q ss_pred             eEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH----------
Q 012647          315 AMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF----------  384 (459)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------  384 (459)
                      |+++  .++++.+.+...    ......+.+.+++.++...|++....      +++..+......+++.          
T Consensus       290 ~l~~--~~~~l~~~l~~~----~~~~g~~~~~~~~~a~~~al~~~~~r------~~~~~~~~~~l~~~l~~~~~v~~~~~  357 (464)
T 1ibj_A          290 VLAV--KGEKLAKEVYFL----QNSEGSGLAPFDCWLCLRGIKTMALR------IEKQQENARKIAMYLSSHPRVKKVYY  357 (464)
T ss_dssp             EEEE--CSHHHHHHHHHH----HHHTTCBCCHHHHHHHHHHHTTHHHH------HHHHHHHHHHHHHHHHTCTTCCEEEC
T ss_pred             EEEE--ChHHHHHHHHHH----HHhcCCCCCHHHHHHHHhchhhHHHH------HHHHHHHHHHHHHHHHhCCCceEEEC
Confidence            9965  335644444332    21122245666777776667653221      1222222222222222          


Q ss_pred             HHHhhccCCCCCcccccCC----cceeeecCCC-H----HHHHHHHhcccEEEcCC------------------------
Q 012647          385 DSLSAKDKSGKDWSFILRQ----IGMFSFTGLN-K----AQSDNMTNKWHVYMTKD------------------------  431 (459)
Q Consensus       385 ~~L~~~~g~~~~~~~~~~~----~g~f~~~~l~-~----~~~~~ll~~~gI~v~~g------------------------  431 (459)
                      +.|+ ++  | ++++..++    ++++ ++.+. .    .+++.| +.+||.+.+|                        
T Consensus       358 ~~L~-~~--p-~~~~~~~~~~g~g~~~-~~~l~~~~~~~~~~~~L-~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~  431 (464)
T 1ibj_A          358 AGLP-DH--P-GHHLHFSQAKGAGSVF-SFITGSVALSKHLVETT-KYFSIAVSFGSVKSLISMPCFMSHASIPAEVREA  431 (464)
T ss_dssp             TTST-TS--T-THHHHTTTCSCCCSEE-EEECSCHHHHHHHHHHC-SSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSS
T ss_pred             CCCC-CC--c-chHHHhccCCCCceEE-EEEECCHHHHHHHHHhc-CcceEeecCCCCceeeecccccccccCCHHHHHh
Confidence            2222 22  1 14444443    3444 33342 2    233343 3357766543                        


Q ss_pred             -----C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          432 -----G--RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       432 -----g--Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                           +  |||++.   |++++++++|+++++++
T Consensus       432 ~g~~~~~iRlsvg~---edi~~li~~L~~al~~~  462 (464)
T 1ibj_A          432 RGLTEDLVRISAGI---EDVDDLISDLDIAFKTF  462 (464)
T ss_dssp             SSCCTTCEEEECCS---SCHHHHHHHHHHHHHSC
T ss_pred             cCCCcCeEEEEeCC---CCHHHHHHHHHHHHhhc
Confidence                 2  899875   89999999999998764

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.94  E-value=7.2e-26  Score=229.95  Aligned_cols=337  Identities=11%  Similarity=0.072  Sum_probs=210.6

Q ss_pred             CCCceeecccc-cCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           82 DEKKLNLGVGA-YRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~-~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      +.+++++..|. |+|.....++ +.|.+++.+.+..+. ..|.+..+..+||+++++++..        +++++  |+||
T Consensus        31 g~~~~~~~~~~~ylD~~~~~~~-~~v~~a~~~~l~~~~-~~y~~~~~~~~l~~~la~~~~~--------~~v~~--t~~g   98 (467)
T 2oqx_A           31 GMNPFLLDSEDVFIDLLTDSGT-GAVTQSMQAAMMRGD-EAYSGSRSYYALAESVKNIFGY--------QYTIP--THQG   98 (467)
T ss_dssp             TSCGGGSCGGGCSEECSCCSSC-SCCCHHHHHHTTSCC-CCSSSCHHHHHHHHHHHHHHCC--------SEEEE--EC--
T ss_pred             CCCceeccCCCeeEecccCCCc-HHHHHHHHHHhccCc-ceeccCchhHHHHHHHHHHhCc--------CcEEE--cCCc
Confidence            45678888875 3343322222 778888888775543 5788888999999999999732        57888  9999


Q ss_pred             hhHHHHHHHHHHHhCC-----C----CEEEEcCCCCcchHHHhhhCCCCeeeeee----ecC----CCCCCCHHHHHHHH
Q 012647          161 TGSLRLAAALIERYFP-----G----AKVLISSPTWGNHKNIFNDARVPWSEYRY----YDP----KTVGLDFEGMIADI  223 (459)
Q Consensus       161 t~a~~l~~~~~~~~~~-----g----d~Vlv~~p~y~~~~~~~~~~G~~v~~v~~----~~~----~~~~~d~e~l~~~i  223 (459)
                      ++|++++.+.+  ..+     |    |+|++..+.|..+.......|+.++....    ...    .++.+|+++|++++
T Consensus        99 t~A~~~al~~~--~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i  176 (467)
T 2oqx_A           99 RGAEQIYIPVL--IKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGI  176 (467)
T ss_dssp             CCSHHHHHHHH--HHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHH
T ss_pred             HHHHHHHHHHH--hccccccCCCCccceEEecccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHH
Confidence            99999985444  456     7    99888755545555666666666544321    001    34568999999999


Q ss_pred             HcCC-CCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCCeeEEeccCCC----------CCCCCCCCChhHHHHHHh
Q 012647          224 KAAP-GGSFILLHGCAHNPT-GIDPTPEQWEKIADVIQEKNHIPFFDVAYQG----------FASGSLDNDASSVRLFAT  291 (459)
Q Consensus       224 ~~~~-~~~~~ii~~~p~NPT-G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~----------~~~~~~~~~~~~~~~~~~  291 (459)
                      ++.. ++++++++++||||| |.+++.+++++|+++|++||+++|+|+++..          ..+.+.  +   ...+..
T Consensus       177 ~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~--~---~~~~~~  251 (467)
T 2oqx_A          177 EEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDW--T---IEQITR  251 (467)
T ss_dssp             HHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTS--C---HHHHHH
T ss_pred             HhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCc--c---HHHHhh
Confidence            8421 257788889999998 9999999999999999999999999955321          122211  1   112210


Q ss_pred             ---cCCeEEEEEcCCcCcccC-CCCcceEEEEeCCh---hHHHHHHHHHHhhcc-ccccCCchHHHHHHHHHhCChhhHH
Q 012647          292 ---RGMELLVAQSYSKNLGLY-AERIGAMNVVCSSS---DLAARVKSQLKRLAR-PMYSNPPVHGARIVANVVGNPALFD  363 (459)
Q Consensus       292 ---~~~~~i~~~S~SK~~~~~-G~RiG~~~~v~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~~~~~~  363 (459)
                         ...+ +++.|+||.++++ |   ||+++  .++   +....+......... ..+...+..+..+....+.      
T Consensus       252 ~~~~~~d-~~~~s~sK~~g~~~G---g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~------  319 (467)
T 2oqx_A          252 ETYKYAD-MLAMSAKKDAMVPMG---GLLCM--KDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLY------  319 (467)
T ss_dssp             HHGGGCS-EEEEESSSTTCCSSC---EEEEE--CSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHH------
T ss_pred             hhhccCC-eEEEecccccCCCCc---eEEEe--cChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhH------
Confidence               1122 4578999999876 3   55533  333   222332222111100 0111122222111111111      


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC-------CH-H-----HHHHHHhcccEEEc
Q 012647          364 EWKAEM-EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-------NK-A-----QSDNMTNKWHVYMT  429 (459)
Q Consensus       364 ~~~~~~-~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-------~~-~-----~~~~ll~~~gI~v~  429 (459)
                         +.+ +...++..++++++.+.|+ ++|    +.+. +.+++++|+.+       +. +     +++.|++++||.+.
T Consensus       320 ---~~~~~~~~~~~~~~~~~l~~~L~-~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~  390 (467)
T 2oqx_A          320 ---DGMNLDWLAYRIAQVQYLVDGLE-EIG----VVCQ-QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAV  390 (467)
T ss_dssp             ---HTTCHHHHHHHHHHHHHHHHHHH-HTT----CCEE-EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECE
T ss_pred             ---hhhhHHHHHHHHHHHHHHHHHHH-HCC----Ceee-cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceec
Confidence               011 1233445678889999998 765    4666 66777777643       21 1     25666466799987


Q ss_pred             C-C------------------C--cEEEcc--CChhhHHHHHHHHHHHHhhc
Q 012647          430 K-D------------------G--RISLAG--LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       430 ~-g------------------g--Ris~~~--~~~e~i~~~~~~l~~~~~~~  458 (459)
                      | +                  +  ||+++.  .+++++++++++|+++++++
T Consensus       391 ~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~  442 (467)
T 2oqx_A          391 EIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENA  442 (467)
T ss_dssp             EESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSG
T ss_pred             ccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Confidence            6 2                  3  888873  48999999999999988753

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.94  E-value=2.9e-25  Score=221.90  Aligned_cols=324  Identities=16%  Similarity=0.150  Sum_probs=197.2

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC------CCcccHHHHH----HHHHHHhcCCCCccccCceE
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL------PIEGLAAFNK----VTAELLFGADNSVLKEQRVA  153 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~------~~~g~~~lr~----aia~~l~~~~~~~~~~~~i~  153 (459)
                      +.++|..+..      + +++.|.+++.+.+.......|+      ......++++    .+++++..      ++++|+
T Consensus        26 ~~i~l~~~~~------~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~------~~~~i~   92 (417)
T 3n0l_A           26 EGLEMIASEN------F-TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNC------KFANVQ   92 (417)
T ss_dssp             HSEECCTTCC------C-CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC------SEEECC
T ss_pred             cCeeeecccC------C-CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCC------CCcceE
Confidence            4677765442      2 3889999998877432222332      2233344444    55666432      256677


Q ss_pred             EeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCc
Q 012647          154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGS  230 (459)
Q Consensus       154 ~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~  230 (459)
                      +  ++| ++++.++.  ...+.+||+|++++|+|..+..   .+...|..+..+++..++++.+|++++++++++  +++
T Consensus        93 ~--~sG-t~a~~~~~--~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~--~~~  165 (417)
T 3n0l_A           93 P--NSG-SQANQGVY--AALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKK--EKP  165 (417)
T ss_dssp             C--SSH-HHHHHHHH--HHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHH--HCC
T ss_pred             e--ccH-HHHHHHHH--HHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHh--cCC
Confidence            7  666 89999984  4447899999999999987654   334444444444432245678999999999983  156


Q ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccC
Q 012647          231 FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (459)
Q Consensus       231 ~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  309 (459)
                      +++++++|+|  |.+++   +++|.++|++||+++|+||+|. ++.+.+..  ...    .  ...++++.||||.+  +
T Consensus       166 ~~v~~~~~~~--G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~--~~~----~--~~~di~~~s~sK~l--~  230 (417)
T 3n0l_A          166 KLIVCGASAY--ARVID---FAKFREIADEIGAYLFADIAHIAGLVVAGEH--PSP----F--PYAHVVSSTTHKTL--R  230 (417)
T ss_dssp             SEEEECCSSC--CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSS--CCC----T--TTCSEEEEESSTTT--C
T ss_pred             eEEEECCccc--CccCC---HHHHHHHHHHcCCEEEEECccchhhhhcccC--CCc----c--ccceEEEeeCcccc--C
Confidence            6777777776  77765   7889999999999999999943 22221100  000    0  12468899999987  6


Q ss_pred             CCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012647          310 AERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA  389 (459)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  389 (459)
                      |+|.||+++  +++++.+.+......   ....+++...+.++...+..     .+.+++++.++++.++++++.+.|+ 
T Consensus       231 g~~~G~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~aa~~~a~~~-----~~~~~~~~~~~~~~~~~~~l~~~L~-  299 (417)
T 3n0l_A          231 GPRGGIIMT--NDEELAKKINSAIFP---GIQGGPLMHVIAAKAVGFKF-----NLSDEWKVYAKQVRTNAQVLANVLM-  299 (417)
T ss_dssp             SCSCEEEEE--SCHHHHHHHHHHHTT---TTCSSCCHHHHHHHHHHHHH-----HTSHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             CCCeeEEEE--CCHHHHHHHhhhhCC---cccCCcHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHHHHHHHHHHH-
Confidence            889999854  436744444332211   12223333332232222211     0123356788888899999999999 


Q ss_pred             ccCCCCCccccc-CCcceeeecC-----CCHHHHHHHHhcccEEEcCC-------------C-cEEEcc-----CChhhH
Q 012647          390 KDKSGKDWSFIL-RQIGMFSFTG-----LNKAQSDNMTNKWHVYMTKD-------------G-RISLAG-----LSLAKC  444 (459)
Q Consensus       390 ~~g~~~~~~~~~-~~~g~f~~~~-----l~~~~~~~ll~~~gI~v~~g-------------g-Ris~~~-----~~~e~i  444 (459)
                      +.|    +.+.. ...+.++|+.     ++.+.+.++++++||.+.++             + |+++..     .+++++
T Consensus       300 ~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i  375 (417)
T 3n0l_A          300 DRK----FKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEM  375 (417)
T ss_dssp             HTT----CEEGGGSCSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHH
T ss_pred             hCC----ceeccCCCCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHH
Confidence            766    45443 2334455553     35667777777789998743             1 776542     367999


Q ss_pred             HHHHHHHHHHHhh
Q 012647          445 EYLADAIIDSYHN  457 (459)
Q Consensus       445 ~~~~~~l~~~~~~  457 (459)
                      ++++++|++++++
T Consensus       376 ~~~~~~l~~~l~~  388 (417)
T 3n0l_A          376 EIVSNYIADILDD  388 (417)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999865

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.94  E-value=3.8e-26  Score=223.66  Aligned_cols=287  Identities=10%  Similarity=-0.029  Sum_probs=185.5

Q ss_pred             CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCC--EEEEcCCCCcchHH---Hh
Q 012647          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA--KVLISSPTWGNHKN---IF  194 (459)
Q Consensus       120 ~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd--~Vlv~~p~y~~~~~---~~  194 (459)
                      ..|++..+..+|++++++++..       +.. ++  +++|++++.++.  ...+.+||  .|+++.++|..+..   ..
T Consensus        41 ~~y~~~~~~~~l~~~la~~~~~-------~~~-i~--~~~G~~a~~~al--~~~~~~gd~~~vi~~~~~~~~~~~~~~~~  108 (357)
T 3lws_A           41 DQYGTGAIIEPFEQKFADVLGM-------DDA-VF--FPSGTMAQQVAL--RIWSDETDNRTVAYHPLCHLEIHEQDGLK  108 (357)
T ss_dssp             EETTEETTHHHHHHHHHHHHTC-------SEE-EE--ESCHHHHHHHHH--HHHHHHHTCCEEEECTTCHHHHSSTTHHH
T ss_pred             ccccCChHHHHHHHHHHHHhCC-------CcE-EE--ecCcHHHHHHHH--HHHhhcCCCcEEEecccceeeeeccchhh
Confidence            5687778899999999999743       233 44  577888988873  33356777  67776666443322   34


Q ss_pred             hhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCCeeEEeccCCC
Q 012647          195 NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT-GIDPTPEQWEKIADVIQEKNHIPFFDVAYQG  273 (459)
Q Consensus       195 ~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT-G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~  273 (459)
                      ...|++++.+|.   +++.+|+++++++  .   +++++++++||||| |.+++.+++++|+++|++||+++|+|++|..
T Consensus       109 ~~~g~~~~~v~~---~~~~~d~~~l~~~--~---~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~  180 (357)
T 3lws_A          109 ELHPIETILVGA---ADRLMTLDEIKAL--P---DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLF  180 (357)
T ss_dssp             HHSSCEEEECSC---TTSCCCHHHHHTC--C---SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHH
T ss_pred             hccCcEEEEecC---CCCCcCHHHHhcC--c---CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhh
Confidence            566888888874   3467999999876  2   36788889999998 9999999999999999999999999999761


Q ss_pred             --CCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc-ccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHH
Q 012647          274 --FASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGAR  350 (459)
Q Consensus       274 --~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (459)
                        ..+.+  .   ....+....  .+++.||||.+ ++.|   ||+++   +++.++.+........ . ........+.
T Consensus       181 ~~~~~~~--~---~~~~~~~~~--d~~~~s~sK~~~~~~g---g~~~~---~~~~~~~~~~~~~~~~-~-~~~~~~~~~~  245 (357)
T 3lws_A          181 EMLPYYE--K---TAAEIAGLF--DSIYISFYKGLGGIAG---AILAG---PAAFCQTARIWKRRYG-G-DLISLYPYIV  245 (357)
T ss_dssp             HHHHHHT--C---CHHHHHTTS--SEEEEESSSTTCCSSC---EEEEE---CHHHHHHHHHHHHHTT-C-CCSCCHHHHH
T ss_pred             hhhhhcC--C---ChHHHHhcC--CEEEEeccccCCCCce---EEEEc---CHHHHHHHHHHHHHhc-C-CcccchHHHH
Confidence              11111  1   122222222  24478999999 5443   88765   8886555543222211 1 1112222223


Q ss_pred             HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccc-ccCCcceeeecCC--C----HHHHHHHHhc
Q 012647          351 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF-ILRQIGMFSFTGL--N----KAQSDNMTNK  423 (459)
Q Consensus       351 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~~~g~f~~~~l--~----~~~~~~ll~~  423 (459)
                      ++...|++      |   .++ .+++.++++++.+.|+ +++   ++++ ..+.+++|+|+.+  .    .+.+.+.+.+
T Consensus       246 ~~~~~l~~------~---~~~-~~~~~~~~~~l~~~L~-~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  311 (357)
T 3lws_A          246 SADYYYEL------R---KDR-MGQYYEQAKQLAEQFN-ALP---GVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEE  311 (357)
T ss_dssp             HHHHHHHH------H---TTC-HHHHHHHHHHHHHHHH-TST---TEEEESSSCSSSEEEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH------H---HHH-HHHHHHHHHHHHHHHH-hCC---CCeeccCCCcceEEEEEecCChHHHHHHHHHHHHh
Confidence            33222221      1   122 2346777889999998 772   1565 3456677888754  1    2334444455


Q ss_pred             ccEEEcCCC---------cEEEcc----CChhhHHHHHHHHHHHH
Q 012647          424 WHVYMTKDG---------RISLAG----LSLAKCEYLADAIIDSY  455 (459)
Q Consensus       424 ~gI~v~~gg---------Ris~~~----~~~e~i~~~~~~l~~~~  455 (459)
                      +||.+.||.         |++++.    .+.+++++++++|.+++
T Consensus       312 ~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al  356 (357)
T 3lws_A          312 TGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF  356 (357)
T ss_dssp             HCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred             cCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence            799999872         777652    26788889998888765

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.94  E-value=2.2e-25  Score=226.72  Aligned_cols=329  Identities=12%  Similarity=0.032  Sum_probs=217.9

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCC---CcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP---IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~---~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      .++.|+ |.+    . . ..|.+.+++.+.+..  .+.|.+   ..|..++++.+++++....|.+   ..+++  |+||
T Consensus        67 ~~~~lg-~~~----~-~-~~p~v~~~~~~~~~~--~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~---~~~~~--~~gg  132 (474)
T 1wyu_B           67 TFYPLG-SCT----M-K-YNPKLHEEAARLFAD--LHPYQDPRTAQGALRLMWELGEYLKALTGMD---AITLE--PAAG  132 (474)
T ss_dssp             SCCCBT-TTC----C-C-CCCHHHHHHHHTTSS--CCTTSCGGGCHHHHHHHHHHHHHHHHHHTCS---EEECC--CSSH
T ss_pred             Cccccc-ccc----c-c-CCHHHHHHHHHHHHh--cCCCCchhhChHHHHHHHHHHHHHHHHHCCC---ceeec--ChHH
Confidence            456777 543    1 2 245566666554321  234443   4576777777777765554543   13445  8999


Q ss_pred             hhHHHHHHHHHHH--hCCCC-----EEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEE
Q 012647          161 TGSLRLAAALIER--YFPGA-----KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL  233 (459)
Q Consensus       161 t~a~~l~~~~~~~--~~~gd-----~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~i  233 (459)
                      ++++.++..++..  ..+||     +|++++|+|+.+...++..|++++.+|++  +++.+|+++|++++++   +++++
T Consensus       133 t~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~--~~~~~d~~~L~~~i~~---~t~~v  207 (474)
T 1wyu_B          133 AHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSG--PEGEVDLEALKRELGP---HVAAL  207 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBC--TTSSBCHHHHHHHCST---TEEEE
T ss_pred             HHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCC--CCCCcCHHHHHHhhCC---CceEE
Confidence            9999886433322  24887     99999999999999999999999999984  4678999999999975   68888


Q ss_pred             EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccC-C--
Q 012647          234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY-A--  310 (459)
Q Consensus       234 i~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-G--  310 (459)
                      ++++| ||||.+.  +++++|+++|++||+++|+|++|.....+..     ....    .+.++++.|+||.|+.| |  
T Consensus       208 ~~~~p-n~~G~~~--~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~-----~~~~----~g~di~~~s~~K~~~~p~g~g  275 (474)
T 1wyu_B          208 MLTNP-NTLGLFE--RRILEISRLCKEAGVQLYYDGANLNAIMGWA-----RPGD----MGFDVVHLNLHKTFTVPHGGG  275 (474)
T ss_dssp             EECSS-CTTSCCC--TTHHHHHHHHHHHTCEEEEEGGGGGGTTTTC-----CHHH----HTCSEEECCTTTTTCCCCTTS
T ss_pred             EEECC-CCCcccC--CCHHHHHHHHHHcCCEEEEeCchhhhhccCC-----Cccc----CCCcEEEEeCccccccCCCCC
Confidence            88888 6899882  5799999999999999999999976554211     1111    13568888999999877 5  


Q ss_pred             -CCcceEEEEeCChhHHHHHHHHHH-----hh----------ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 012647          311 -ERIGAMNVVCSSSDLAARVKSQLK-----RL----------ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAG  374 (459)
Q Consensus       311 -~RiG~~~~v~~~~~~~~~~~~~~~-----~~----------~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~  374 (459)
                       .|+||+++   ++++++.+...+.     ..          .+....+.+..++.++...+...+     .+.+++..+
T Consensus       276 G~~~G~~~~---~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g-----~~~l~~~~~  347 (474)
T 1wyu_B          276 GPGSGPVGV---KAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLG-----LEGLKKAAA  347 (474)
T ss_dssp             CCCCCCEEE---CGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred             CCCeEEEEE---cHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence             59999976   6663322210000     00          000111244455555554443211     234678889


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCcccccCCccee-eec----CCCH-HHHHHHHhcccEEEcC-------CC--cEEEccC
Q 012647          375 RIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF-SFT----GLNK-AQSDNMTNKWHVYMTK-------DG--RISLAGL  439 (459)
Q Consensus       375 ~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f-~~~----~l~~-~~~~~ll~~~gI~v~~-------gg--Ris~~~~  439 (459)
                      ++.++++++.+.|+ ++|    +++..+...+. .|+    +.+. ++.++|+++ ||.+..       .+  ||+++..
T Consensus       348 ~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-Gi~~~~~~~~~~~~~~lRis~~~~  421 (474)
T 1wyu_B          348 LAVLNARYLKELLK-EKG----YRVPYDGPSMHEFVAQPPEGFRALDLAKGLLEL-GFHPPTVYFPLIVKEALMVEPTET  421 (474)
T ss_dssp             HHHHHHHHHHHHHH-HTT----CBCSSCSSCCSCEEEBCSTTCCHHHHHHHHHHT-TCCCCEESCSTTSTTCEEECCCTT
T ss_pred             HHHHHHHHHHHHHh-hcC----cEecCCCCcceEEEEEcCCCCCHHHHHHHHHHC-CccccccccccccCCEEEEEeecC
Confidence            99999999999999 765    45432222221 233    3344 456677764 997521       12  9998754


Q ss_pred             -ChhhHHHHHHHHHHHHhh
Q 012647          440 -SLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       440 -~~e~i~~~~~~l~~~~~~  457 (459)
                       +++++++++++|++++++
T Consensus       422 ~t~e~id~~~~~L~~~~~~  440 (474)
T 1wyu_B          422 EAKETLEAFAEAMGALLKK  440 (474)
T ss_dssp             SCHHHHHHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHHHHHHHh
Confidence             789999999999988753

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.94  E-value=2.5e-26  Score=225.40  Aligned_cols=318  Identities=12%  Similarity=0.040  Sum_probs=201.6

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCC--------CCCCCCCcccHHHHHHHHHHHhcCCCCccccC-c-eE
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--------NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-R-VA  153 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--------~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~-~-i~  153 (459)
                      .++.++.|.       .++++.+++++.+.+....        ...|++  +..++++.+.+.+....|.+  ++ + ++
T Consensus         4 ~~~l~~~~~-------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~g~~--~~~~~i~   72 (362)
T 2c0r_A            4 RAYNFNAGP-------AALPLEVLERAQAEFVDYQHTGMSIMEMSHRGA--VYEAVHNEAQARLLALLGNP--TGYKVLF   72 (362)
T ss_dssp             CCEECCSSS-------CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSH--HHHHHHHHHHHHHHHHTTCC--SSEEEEE
T ss_pred             ceeeccCCC-------CCCCHHHHHHHHHHHhhhhhcCccccccCCCcH--HHHHHHHHHHHHHHHHhCCC--CCcEEEE
Confidence            345555552       2348999999998774310        011222  23334444444443333431  33 5 45


Q ss_pred             EeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcch--HHHhhhCCCCeeeeeeecCCCC--CCCHHHHHHHHHcCCCC
Q 012647          154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTV--GLDFEGMIADIKAAPGG  229 (459)
Q Consensus       154 ~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~G~~v~~v~~~~~~~~--~~d~e~l~~~i~~~~~~  229 (459)
                      +  |+|++++++++  +.+.+.|||+|+++++.+..+  ...++..| +++.+|++.++++  .+|+++++  ++   ++
T Consensus        73 ~--t~g~t~a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~---~~  142 (362)
T 2c0r_A           73 I--QGGASTQFAMI--PMNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQ---DN  142 (362)
T ss_dssp             E--SSHHHHHHHHH--HHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CC---TT
T ss_pred             E--CCCchHHHHHH--HHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cC---CC
Confidence            6  89999999998  444577999999987765443  45667789 9999998522223  35666653  43   37


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccC
Q 012647          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (459)
Q Consensus       230 ~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  309 (459)
                      ++++++++|+||||.+++  ++++|      +|+++++|++|..+...   .   .    +...  ++++.|+||.+|++
T Consensus       143 t~~v~~~~~~n~tG~~~~--~l~~i------~~~~vivD~a~~~~~~~---~---~----~~~~--d~~~~s~~K~~g~~  202 (362)
T 2c0r_A          143 AAYLHLTSNETIEGAQFK--AFPDT------GSVPLIGDMSSDILSRP---F---D----LNQF--GLVYAGAQKNLGPS  202 (362)
T ss_dssp             EEEEEEESEETTTTEECS--SCCCC------TTSCEEEECTTTTTSSC---C---C----GGGC--SEEEEETTTTTCCS
T ss_pred             cCEEEEeCCcCccceecc--ccccc------CCCEEEEEChhhccCCc---c---c----hhHC--cEEEEeccccccCc
Confidence            899999999999999754  45555      89999999998755421   1   1    1222  47788999999998


Q ss_pred             CCCcceEEEEeCChhHHHHHHHHH------H--hhccccccCCchHHHHHHHHHhCChhhHHHHHH--HHHHHHHHHHHH
Q 012647          310 AERIGAMNVVCSSSDLAARVKSQL------K--RLARPMYSNPPVHGARIVANVVGNPALFDEWKA--EMEMMAGRIKNV  379 (459)
Q Consensus       310 G~RiG~~~~v~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~--~~~~~~~~~~~~  379 (459)
                      |  +||+++   +++.++.+....      .  ........+++..++.++...|+..      .+  .+++++++++++
T Consensus       203 G--~G~l~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~------~~~~~~~~~~~~~~~~  271 (362)
T 2c0r_A          203 G--VTVVIV---REDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWI------EERGGLEGVQQANRKK  271 (362)
T ss_dssp             S--CEEEEE---EGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHH------HHTTHHHHHHHHHHHH
T ss_pred             C--cEEEEE---cHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHH------HHhCCHHHHHHHHHHH
Confidence            9  899976   666433322100      0  0011122356666666665555321      12  468889999999


Q ss_pred             HHHHHHHHhhccC-CCCCccccc---CCcceeeecCC----C-HHHHHHHHhcccEEEcCC----C--cEEEccC-Chhh
Q 012647          380 RQKLFDSLSAKDK-SGKDWSFIL---RQIGMFSFTGL----N-KAQSDNMTNKWHVYMTKD----G--RISLAGL-SLAK  443 (459)
Q Consensus       380 ~~~l~~~L~~~~g-~~~~~~~~~---~~~g~f~~~~l----~-~~~~~~ll~~~gI~v~~g----g--Ris~~~~-~~e~  443 (459)
                      ++++.+.|+ ++| +   +++..   ..++.++++.+    + .++++.| +++||.+.+|    +  |||++.. ++++
T Consensus       272 ~~~l~~~L~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~gi~~~~g~~~~~~iRis~~~~~~~e~  346 (362)
T 2c0r_A          272 ASLIYDAID-QSGGF---YRGCVDVDSRSDMNITFRLASEELEKEFVKAS-EQEGFVGLKGHRSVGGLRASIYNAVPYES  346 (362)
T ss_dssp             HHHHHHHHH-TSTTS---SEESSCGGGBCSSEEEEECSCHHHHHHHHHHH-HHTTEESCBCCTTTCSEEEECCTTSCHHH
T ss_pred             HHHHHHHHH-HcCCc---cccCCChHHcCCcEEEEEcCCcchHHHHHHHH-HHCCCeeccCCCCCCEEEEECCCCCCHHH
Confidence            999999999 875 2   13321   11233344433    2 2345555 4569988775    2  9999754 7899


Q ss_pred             HHHHHHHHHHHHhhc
Q 012647          444 CEYLADAIIDSYHNV  458 (459)
Q Consensus       444 i~~~~~~l~~~~~~~  458 (459)
                      +++++++|++++++.
T Consensus       347 i~~l~~~l~~~~~~~  361 (362)
T 2c0r_A          347 CEALVQFMEHFKRSR  361 (362)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999988753

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.94  E-value=1e-26  Score=227.90  Aligned_cols=317  Identities=13%  Similarity=0.066  Sum_probs=206.6

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcC---CCCCCCC---Cc----ccHHHHHHHHHHHhcCCCCccccCceE
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG---ENKEYLP---IE----GLAAFNKVTAELLFGADNSVLKEQRVA  153 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~---~~~~Y~~---~~----g~~~lr~aia~~l~~~~~~~~~~~~i~  153 (459)
                      .+++++.|.+       ++|+.+++++.+.+...   ....|..   ..    ...++++.+++++...     ++++|+
T Consensus         3 ~~~~~~~g~~-------~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-----~~~~v~   70 (360)
T 1w23_A            3 QVFNFNAGPS-------ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIP-----NDYQIL   70 (360)
T ss_dssp             CCEECCSSSC-------CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCC-----TTEEEE
T ss_pred             ceEeecCCCc-------CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCC-----CCceEE
Confidence            3566666642       34899999999887531   0011211   12    3567888888876431     256898


Q ss_pred             Eeecccc-hhHHHHHHHHHHHhCC---CCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHH-HHHcCCC
Q 012647          154 TVQGLSG-TGSLRLAAALIERYFP---GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA-DIKAAPG  228 (459)
Q Consensus       154 ~~~t~gg-t~a~~l~~~~~~~~~~---gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~-~i~~~~~  228 (459)
                      +  |+|+ ++++.++  +...+.+   ||.|+++.++|.. ...++..| +++.+|++++ ++.+|++++++ ++++   
T Consensus        71 ~--~~g~gt~al~~~--~~~l~~~~~~g~~vi~~~~~~~~-~~~~~~~g-~~~~v~~~~~-~~~~d~~~l~~~~i~~---  140 (360)
T 1w23_A           71 F--LQGGASLQFTML--PMNLLTKGTIGNYVLTGSWSEKA-LKEAKLLG-ETHIAASTKA-NSYQSIPDFSEFQLNE---  140 (360)
T ss_dssp             E--ESSHHHHHHHHH--HHHHCCTTCEEEEEECSHHHHHH-HHHHHTTS-EEEEEEECGG-GTSCSCCCGGGCCCCT---
T ss_pred             E--ECCcchHHHHHH--HHHhcCCCCcccEEEecchhHHH-HHHHHHhC-CeEEeecccc-cCcCCccchHhhccCC---
Confidence            8  9998 9999998  4444544   6677777666643 33467789 9999998532 33479899988 7754   


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc
Q 012647          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (459)
Q Consensus       229 ~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  308 (459)
                      +++++++++||||||.+++  +   |.   ++||+++|+|++|..+...   .   .+    ...  .++++|+||.+|+
T Consensus       141 ~~k~v~~~~~~nptG~~~~--~---i~---~~~~~~li~D~a~~~~~~~---~---~~----~~~--di~~~s~sK~~~~  200 (360)
T 1w23_A          141 NDAYLHITSNNTIYGTQYQ--N---FP---EINHAPLIADMSSDILSRP---L---KV----NQF--GMIYAGAQKNLGP  200 (360)
T ss_dssp             TEEEEEEESEETTTTEECS--S---CC---CCCSSCEEEECTTTTTSSC---C---CG----GGC--SEEEEETTTTTSC
T ss_pred             CCCEEEEeCCCCCcceecc--c---cc---ccCCceEEEechhhcCCCC---c---Cc----ccC--CEEEEEcccccCC
Confidence            7889999999999999987  2   32   3799999999998765421   1   11    112  3789999999997


Q ss_pred             CCCCcceEEEEeCChhHHHHHHHHHHhh--------ccccccCCchHHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHH
Q 012647          309 YAERIGAMNVVCSSSDLAARVKSQLKRL--------ARPMYSNPPVHGARIVANVVGNPALFDEWKA-EMEMMAGRIKNV  379 (459)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~~~~~~~  379 (459)
                      +|  +||+++   +++.++++.......        ....+.+++..++.++...++.  +.   .. .+++++++++++
T Consensus       201 ~G--~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~--~~---~~~~~~~~~~~~~~~  270 (360)
T 1w23_A          201 SG--VTVVIV---KKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDW--IK---DLGGAEAIAKQNEEK  270 (360)
T ss_dssp             TT--CEEEEE---EHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHH--HH---HTTHHHHHHHHHHHH
T ss_pred             CC--cEEEEE---cHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHH--HH---HhcCHHHHHHHHHHH
Confidence            77  899976   666333221100000        0112234455554444443321  10   11 367889999999


Q ss_pred             HHHHHHHHhhccCCCCCc-ccc-cC--CcceeeecCCC-----HHHHHHHHhcccEEEcCC----C--cEEEccC-Chhh
Q 012647          380 RQKLFDSLSAKDKSGKDW-SFI-LR--QIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD----G--RISLAGL-SLAK  443 (459)
Q Consensus       380 ~~~l~~~L~~~~g~~~~~-~~~-~~--~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g----g--Ris~~~~-~~e~  443 (459)
                      ++++.+.|+ +++  + + ... .+  .+++++|+.+.     .+++++|. ++||.+.+|    +  ||+++.. ++++
T Consensus       271 ~~~l~~~L~-~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~~~~~~iRis~~~~~~~~~  345 (360)
T 1w23_A          271 AKIIYDTID-ESN--G-FYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKAK-EQGFVGLNGHRSVGGCRASIYNAVPIDA  345 (360)
T ss_dssp             HHHHHHHHH-TTT--T-SSEESSCGGGBCSSEEEEECSSHHHHHHHHHHHH-HTTEESCBCCTTTCSEEEECCTTSCHHH
T ss_pred             HHHHHHHHH-Hcc--C-cccccCCchhccCcEEEEEcCCCccHHHHHHHHH-HCCeeeecCCCCCCeEEEEecCCCCHHH
Confidence            999999999 775  1 2 322 12  34657776653     23345544 469999887    2  9999854 8899


Q ss_pred             HHHHHHHHHHHHhh
Q 012647          444 CEYLADAIIDSYHN  457 (459)
Q Consensus       444 i~~~~~~l~~~~~~  457 (459)
                      +++++++|++++++
T Consensus       346 i~~~~~~l~~~~~~  359 (360)
T 1w23_A          346 CIALRELMIQFKEN  359 (360)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998865

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.94  E-value=5e-25  Score=219.16  Aligned_cols=288  Identities=15%  Similarity=0.135  Sum_probs=177.5

Q ss_pred             eecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC--CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHH
Q 012647           87 NLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSL  164 (459)
Q Consensus        87 ~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~--~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~  164 (459)
                      ..+++.| +....+++.+.+.+++.........+.|.  +.....++++.+++++..       + +.++  +.+|++++
T Consensus        25 ~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~-------~-~~i~--~~sG~~a~   93 (398)
T 1gc0_A           25 GGALVPP-VYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGG-------E-AGLA--LASGMGAI   93 (398)
T ss_dssp             TTBSSCC-BCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTC-------S-EEEE--ESSHHHHH
T ss_pred             CCCcCCC-ccCCCccccCCHHHHHHhhcCCcCCCcccCCCChHHHHHHHHHHHHhCC-------C-cEEE--ECCHHHHH
Confidence            3455655 44455555677766664221111113343  567788999999999743       2 3444  56668999


Q ss_pred             HHHHHHHHHhCCCCEEEEcCCCCcchHHHh----hhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          165 RLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       165 ~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      +++.  ...+.+||+|+++.|+|..+...+    +..|++++.++.       .|++.+++++++   +++++++++|+|
T Consensus        94 ~~~l--~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~i~~---~~~~v~~~~~~n  161 (398)
T 1gc0_A           94 TSTL--WTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM-------ADLQALEAAMTP---ATRVIYFESPAN  161 (398)
T ss_dssp             HHHH--HHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECT-------TCHHHHHHHCCT---TEEEEEEESSCT
T ss_pred             HHHH--HHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECC-------CCHHHHHHhcCC---CCeEEEEECCCC
Confidence            9983  334679999999999999887665    667888888875       279999999875   788999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc-ceEEEE
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVV  319 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v  319 (459)
                      |||.++   ++++|+++|++||+++|+|++|..+.+..      .+     ..+.++++.|+||.++.+|+|+ ||+++ 
T Consensus       162 ptG~~~---~l~~i~~l~~~~~~~li~D~~~~~~~~~~------~~-----~~~~d~~~~S~sK~~~~~~~~~~G~l~~-  226 (398)
T 1gc0_A          162 PNMHMA---DIAGVAKIARKHGATVVVDNTYCTPYLQR------PL-----ELGADLVVHSATKYLSGHGDITAGIVVG-  226 (398)
T ss_dssp             TTCCCC---CHHHHHHHHGGGTCEEEEECTTTHHHHCC------GG-----GGTCSEEEEETTTTTTCSSSCCCEEEEE-
T ss_pred             CCcccc---cHHHHHHHHHHcCCEEEEECCCcccccCC------ch-----hhCceEEEECCccccCCCCCCeEEEEEE-
Confidence            999996   58899999999999999999987654321      11     1246789999999999999998 88755 


Q ss_pred             eCChhHHHHHHHHHHhhccc-cccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-----
Q 012647          320 CSSSDLAARVKSQLKRLARP-MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS-----  393 (459)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~-----  393 (459)
                        +++.++.   .+...... .....+...+.++...++.          +....++..++.+.+.+.|+ +++.     
T Consensus       227 --~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~l~~~L~-~~~~v~~v~  290 (398)
T 1gc0_A          227 --SQALVDR---IRLQGLKDMTGAVLSPHDAALLMRGIKT----------LNLRMDRHCANAQVLAEFLA-RQPQVELIH  290 (398)
T ss_dssp             --CHHHHHH---HHHTHHHHHTCCCCCHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHHHH-TCTTEEEEE
T ss_pred             --ChHHHHH---HHHHHhhccCCCCCCHHHHHHHHhccch----------HHHHHHHHHHHHHHHHHHHh-cCCCeeEEE
Confidence              6654332   12221111 1223455555555555542          23334455556666666666 4320     


Q ss_pred             -C-----CCccccc----CCcceeeecCC--CHHHHHHHHhcccEEEc
Q 012647          394 -G-----KDWSFIL----RQIGMFSFTGL--NKAQSDNMTNKWHVYMT  429 (459)
Q Consensus       394 -~-----~~~~~~~----~~~g~f~~~~l--~~~~~~~ll~~~gI~v~  429 (459)
                       |     +.+.+..    ..++++.| .+  ..+.+..++++.+|.+.
T Consensus       291 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~l~~~~i~~~  337 (398)
T 1gc0_A          291 YPGLASFPQYTLARQQMSQPGGMIAF-ELKGGIGAGRRFMNALQLFSR  337 (398)
T ss_dssp             EC----------------CCTTEEEE-EETTHHHHHHHHHHHCSSSEE
T ss_pred             CCCCCCCcCHHHHHhhCCCCceEEEE-EECCCHHHHHHHHHhCCCcee
Confidence             0     0112222    24566554 33  23556777777777653

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.94  E-value=3.1e-26  Score=224.42  Aligned_cols=304  Identities=13%  Similarity=-0.013  Sum_probs=193.6

Q ss_pred             CcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCE--
Q 012647          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK--  179 (459)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~--  179 (459)
                      ++|.+.+++.+.+.   ...|++..+..++++++++++...       . .++  ++||++++.++.  ...+.+||+  
T Consensus        27 ~~p~v~~ai~~~~~---~~~~~~~~~~~~l~~~la~~~~~~-------~-~i~--~~~g~~a~~~a~--~~~~~~g~~~v   91 (359)
T 3pj0_A           27 VLTEALQNIDDNLE---SDIYGNGAVIEDFETKIAKILGKQ-------S-AVF--FPSGTMAQQIAL--RIWADRKENRR   91 (359)
T ss_dssp             HHHHHTTTSCTTCB---CCBTTBSHHHHHHHHHHHHHHTCS-------E-EEE--ESCHHHHHHHHH--HHHHHHHTCCE
T ss_pred             CCHHHHHHHHhhcc---cCcccCCHHHHHHHHHHHHHhCCC-------c-EEE--eCCHHHHHHHHH--HHHHhcCCCcE
Confidence            36888888777442   256778889999999999997432       2 344  578889998873  333557776  


Q ss_pred             EEEcCCCCcchH---HHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC-CCCCCHHHHHHHH
Q 012647          180 VLISSPTWGNHK---NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT-GIDPTPEQWEKIA  255 (459)
Q Consensus       180 Vlv~~p~y~~~~---~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT-G~~~s~~~l~~i~  255 (459)
                      |+++.++|..+.   ......|++++.+|.   +++.+|+++++++ .   ++++++++++||||| |.+++.+++++|+
T Consensus        92 vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~---~~~~~d~~~l~~~-~---~~~~~v~~~~p~n~~~G~~~~~~~l~~l~  164 (359)
T 3pj0_A           92 VAYHPLSHLEIHEQDGLKELQQITPLLLGT---ANQLLTIDDIKSL-R---EPVSSVLIELPQREIGGQLPAFEELEKIS  164 (359)
T ss_dssp             EEECTTCHHHHSSTTHHHHHHCCEEEECSC---TTSCCCHHHHHTC-S---SCCSEEEEESSBGGGTSBCCCHHHHHHHH
T ss_pred             EEEeccceeeehhcchHHHhcCceEEecCC---cCCCcCHHHHHhc-c---CCceEEEEEecccCCCcccCCHHHHHHHH
Confidence            555545543221   122456899988876   3568999999887 3   367888899999998 7999999999999


Q ss_pred             HHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHh
Q 012647          256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKR  335 (459)
Q Consensus       256 ~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~  335 (459)
                      ++|++||+++|+|++|..........   ....+. . ...+++.||||.++.++ + ||++.   ++++++.+......
T Consensus       165 ~~~~~~~~~li~D~a~~~~~~~~~~~---~~~~~~-~-~~d~~~~s~sK~~~~~~-g-g~~~~---~~~l~~~~~~~~~~  234 (359)
T 3pj0_A          165 EYCHEQGISLHLDGARLWEITPFYQK---SAEEIC-A-LFDSVYVSFYKGIGGIA-G-AILAG---NDDFVQEAKIWKRR  234 (359)
T ss_dssp             HHHHHHTCEEEEEETTCGGGHHHHTC---CHHHHH-T-TCSEEEEESSSTTCCSS-C-EEEEE---CHHHHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEECcchhcchhhhCC---CHHHhh-c-cCCEEEEeccccCCCcc-e-EEEEC---CHHHHHHHHHHHHH
Confidence            99999999999999976443100001   111222 2 22355679999987553 2 66544   88866555432221


Q ss_pred             hccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCcccc-cCCcceeeecCC-
Q 012647          336 LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFI-LRQIGMFSFTGL-  412 (459)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~-~~~~g~f~~~~l-  412 (459)
                      .. . ........+.++...++         +.+ +..+++.++++++.+.|+ ++ |    +++. .+.+++|+|+.+ 
T Consensus       235 ~~-~-~~~~~~~~~~a~~~~l~---------~~~-~~~~~~~~~~~~l~~~L~-~~~g----~~~~~~~~~~~~~~~~~~  297 (359)
T 3pj0_A          235 YG-G-DLISLYPYILSADYYFE---------KRI-GKMAEYFEAAKGLAERFN-SCSG----VKTVPEVPVSNMFHVYFE  297 (359)
T ss_dssp             TT-C-CCSCCHHHHHHHHHHHH---------HHG-GGHHHHHHHHHHHHHHHH-TSTT----EEEESSSCSSSEEEEEES
T ss_pred             hC-C-CcchhHHHHHHHHHHHH---------HHH-HHhHHHHHHHHHHHHHHh-hCCC----ceeeccCCcceEEEEEec
Confidence            11 1 11122222222222221         112 333456778889999999 76 4    5553 345555655533 


Q ss_pred             -C----HHHHHHHHhcccEEEcCCC----------cEEEcc----CChhhHHHHHHHHHHH
Q 012647          413 -N----KAQSDNMTNKWHVYMTKDG----------RISLAG----LSLAKCEYLADAIIDS  454 (459)
Q Consensus       413 -~----~~~~~~ll~~~gI~v~~gg----------Ris~~~----~~~e~i~~~~~~l~~~  454 (459)
                       .    .+.+.+.+.++||.+.||.          |++++.    .+.+++++++++|.+.
T Consensus       298 ~~~~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~  358 (359)
T 3pj0_A          298 NSADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE  358 (359)
T ss_dssp             SCHHHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred             CccchhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence             2    2344444455799999982          777652    3678888888888765

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.94  E-value=2.5e-25  Score=225.08  Aligned_cols=321  Identities=13%  Similarity=0.029  Sum_probs=217.2

Q ss_pred             CcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCcccc---CceEEeecccchhHHHHHHHHHHH-h---
Q 012647          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE---QRVATVQGLSGTGSLRLAAALIER-Y---  174 (459)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~---~~i~~~~t~ggt~a~~l~~~~~~~-~---  174 (459)
                      .++.+.+++.+++..+. ..|....+..++++.+.+++....|.+.+.   ..+++  |+|||+++.++...+.. +   
T Consensus        54 ~~~~v~e~~~~a~~~~~-~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~--t~ggtea~~~al~a~~~~~~~~  130 (452)
T 2dgk_A           54 DDENVHKLMDLSINKNW-IDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTN--TIGSSEACMLGGMAMKWRWRKR  130 (452)
T ss_dssp             CCHHHHHHHHHTTTCBT-TCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEE--ESSHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhccCC-CChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEE--eCCHHHHHHHHHHHHHHHHHHH
Confidence            36789999988876432 456666777778888777766655554221   13778  99999999988433321 0   


Q ss_pred             --CCC-----CEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCC
Q 012647          175 --FPG-----AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPT  247 (459)
Q Consensus       175 --~~g-----d~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s  247 (459)
                        .+|     ++|++++ +|..|...++..|++++.+|+++ +++.+|+++|++++++   +++++++++|+||||.+  
T Consensus       131 ~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~~~i~~---~t~~v~~~~~~n~tG~~--  203 (452)
T 2dgk_A          131 MEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRP-GQLFMDPKRMIEACDE---NTIGVVPTFGVTYTGNY--  203 (452)
T ss_dssp             HHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBT-TBCSCCHHHHHHHCCT---TEEEEECBBSCTTTCBB--
T ss_pred             HHhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCC-CCCeECHHHHHHHHhh---CCEEEEEEcCCcCCccc--
Confidence              145     5999999 99999999999999999999853 3689999999999976   78899999999999999  


Q ss_pred             HHHHHHHHHHHHhc------CCeeEEeccCCCCCC---CCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012647          248 PEQWEKIADVIQEK------NHIPFFDVAYQGFAS---GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (459)
Q Consensus       248 ~~~l~~i~~l~~~~------~~~ii~Deay~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (459)
                       +++++|+++|+++      |+++++|++|..+..   .+. . .+    ......-++++.|++| |++.|+|+||+++
T Consensus       204 -~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~-~-~~----~~~~~~~d~~~~~~hK-~~~~~~~~G~~~~  275 (452)
T 2dgk_A          204 -EFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPD-I-VW----DFRLPRVKSISASGHK-FGLAPLGCGWVIW  275 (452)
T ss_dssp             -CCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTT-C-CC----STTSTTEEEEEEETTT-TTCCCSSCEEEEE
T ss_pred             -CCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCcc-c-hh----hcCCCCCcEEEECccc-ccCCCCCeEEEEE
Confidence             7788899999995      999999999987642   110 0 00    0112235667889999 5568899999954


Q ss_pred             EeCChhHHHHHHHHHHhhcccc---------ccCC---chHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          319 VCSSSDLAARVKSQLKRLARPM---------YSNP---PVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDS  386 (459)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~---------~~~~---~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  386 (459)
                        ++++..   .+.+.......         ..+.   ..+++.++...+.        .+.++++.+++.++++++.+.
T Consensus       276 --~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg--------~~g~~~~~~~~~~~a~~l~~~  342 (452)
T 2dgk_A          276 --RDEEAL---PQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG--------REGYTKVQNASYQVAAYLADE  342 (452)
T ss_dssp             --SSGGGS---CGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             --cCHHHH---HHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHH
Confidence              444321   11111000000         0011   2233444433332        234678888999999999999


Q ss_pred             HhhccCCCCCccccc-----CCcceeeec--C-----CC-HHHHHHHHhcccEEEc----CC---C----cEEEccC-Ch
Q 012647          387 LSAKDKSGKDWSFIL-----RQIGMFSFT--G-----LN-KAQSDNMTNKWHVYMT----KD---G----RISLAGL-SL  441 (459)
Q Consensus       387 L~~~~g~~~~~~~~~-----~~~g~f~~~--~-----l~-~~~~~~ll~~~gI~v~----~g---g----Ris~~~~-~~  441 (459)
                      |+ +++   ++++..     +..++++|.  +     ++ .++.++|.+ .||.+.    |+   +    ||+++.. ++
T Consensus       343 L~-~~~---~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~-~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~  417 (452)
T 2dgk_A          343 IA-KLG---PYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRL-RGWQVPAFTLGGEATDIVVMRIMCRRGFEM  417 (452)
T ss_dssp             HH-TTS---SEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHH-TTCBCCEEECSTTCTTCEEEEEECCTTCCH
T ss_pred             HH-hCC---CeEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHh-cCCeeeeeeCCcccCCeEEEEEEecCCCCH
Confidence            99 874   155553     234554442  2     23 455666665 598532    32   2    9998764 78


Q ss_pred             hhHHHHHHHHHHHHhhc
Q 012647          442 AKCEYLADAIIDSYHNV  458 (459)
Q Consensus       442 e~i~~~~~~l~~~~~~~  458 (459)
                      ++++++++.|+++++.+
T Consensus       418 e~id~li~~l~~~~~~~  434 (452)
T 2dgk_A          418 DFAELLLEDYKASLKYL  434 (452)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999887653

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.94  E-value=2.8e-25  Score=218.69  Aligned_cols=305  Identities=10%  Similarity=0.002  Sum_probs=207.5

Q ss_pred             ccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH---hCC
Q 012647          100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER---YFP  176 (459)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~---~~~  176 (459)
                      +++++.+.+++.+.+...   .|.+.....++|+++++++..        +++++  |+||+++++++  +...   +.+
T Consensus         9 ~~~~~~v~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~v~~--~~ggt~al~~~--~~~~~~~~~~   73 (375)
T 2fnu_A            9 PCLDKEDKKAVLEVLNSK---QLTQGKRSLLFEEALCEFLGV--------KHALV--FNSATSALLTL--YRNFSEFSAD   73 (375)
T ss_dssp             CCCCHHHHHHHHHHHTSS---CCSSSHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHSSCCCTT
T ss_pred             CCCCHHHHHHHHHHHHcC---cccCChHHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHHHH--HHHhcccCCC
Confidence            345899999999988642   244667789999999999743        27888  99999999998  3433   568


Q ss_pred             CCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 012647          177 GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD  256 (459)
Q Consensus       177 gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~  256 (459)
                      ||+|++++|+|..+...++..|++++.+|+++  ++.+|++.+++++++   ++++++++++   ||.+.   ++++|.+
T Consensus        74 gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~---~~~~v~~~~~---tG~~~---~l~~i~~  142 (375)
T 2fnu_A           74 RNEIITTPISFVATANMLLESGYTPVFAGIKN--DGNIDELALEKLINE---RTKAIVSVDY---AGKSV---EVESVQK  142 (375)
T ss_dssp             SCEEEECSSSCTHHHHHHHHTTCEEEECCBCT--TSSBCGGGSGGGCCT---TEEEEEEECG---GGCCC---CHHHHHH
T ss_pred             CCEEEECCCccHhHHHHHHHCCCEEEEeccCC--CCCCCHHHHHhhcCc---CceEEEEeCC---cCCcc---CHHHHHH
Confidence            99999999999999999999999999999853  347999999988865   6777665544   99995   4788999


Q ss_pred             HHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCC--cCcccCCCCcceEEEEeCChhHHHHHHHHHH
Q 012647          257 VIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS--KNLGLYAERIGAMNVVCSSSDLAARVKSQLK  334 (459)
Q Consensus       257 l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~  334 (459)
                      +|++||+++|+|++|.......   . ..    +.... ++.+.|||  |.+++ |  +|++++ .++++..+.+.....
T Consensus       143 l~~~~~~~li~D~a~~~~~~~~---~-~~----~~~~~-~i~~~s~s~~K~~~~-g--~g~~~~-~~~~~~~~~~~~~~~  209 (375)
T 2fnu_A          143 LCKKHSLSFLSDSSHALGSEYQ---N-KK----VGGFA-LASVFSFHAIKPITT-A--EGGAVV-TNDSELHEKMKLFRS  209 (375)
T ss_dssp             HHHHHTCEEEEECTTCTTCEET---T-EE----TTSSS-SEEEEECCTTSSSCC-S--SCEEEE-ESCHHHHHHHHHHTB
T ss_pred             HHHHcCCEEEEECccccCCeEC---C-ee----ccccC-CeEEEeCCCCCCccc-c--CceEEE-eCCHHHHHHHHHHHh
Confidence            9999999999999976543210   0 00    11112 47778888  99985 7  798853 345665444433211


Q ss_pred             hhc-----------cccc-cCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC
Q 012647          335 RLA-----------RPMY-SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR  402 (459)
Q Consensus       335 ~~~-----------~~~~-~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~  402 (459)
                      ...           ...+ ...+.+.+.++...+          +.+++..++++++++++.+.|+ +++   ++++..+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----------~~~~~~~~~~~~~~~~l~~~L~-~~~---~~~~~~~  275 (375)
T 2fnu_A          210 HGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQL----------KKAPFLMQKREEAALTYDRIFK-DNP---YFTPLHP  275 (375)
T ss_dssp             TTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHH----------TTHHHHHHHHHHHHHHHHHHHT-TCS---SEEESGG
T ss_pred             cCCccccccccccccccccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhh-cCC---CccccCC
Confidence            100           0000 122333222222111          1246777888889999999999 762   1454443


Q ss_pred             ----Ccc-eeeec--C---C-CHH-HHHHHHhcccEEEcC----C-----------------------C--cEEEccC-C
Q 012647          403 ----QIG-MFSFT--G---L-NKA-QSDNMTNKWHVYMTK----D-----------------------G--RISLAGL-S  440 (459)
Q Consensus       403 ----~~g-~f~~~--~---l-~~~-~~~~ll~~~gI~v~~----g-----------------------g--Ris~~~~-~  440 (459)
                          .++ ++.|+  .   . +.+ +.+.|. ++||.+..    +                       +  ||+++.. +
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t  354 (375)
T 2fnu_A          276 LLKDKSSNHLYPILMHQKFFTCKKLILESLH-KRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLN  354 (375)
T ss_dssp             GCSSCCCCSCEEEEECGGGGGGHHHHHHHHH-HTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCC
T ss_pred             CCCCCcceEEEEEEeCccccchHHHHHHHHH-HCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCC
Confidence                123 22333  2   2 333 455554 56999872    1                       2  8887643 7


Q ss_pred             hhhHHHHHHHHHHHHhhc
Q 012647          441 LAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       441 ~e~i~~~~~~l~~~~~~~  458 (459)
                      ++++++++++|+++++++
T Consensus       355 ~~~i~~~~~~l~~~~~~~  372 (375)
T 2fnu_A          355 LESVQNIAHSVLKTFESF  372 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            899999999999998765

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.93  E-value=5.5e-25  Score=213.15  Aligned_cols=183  Identities=15%  Similarity=0.084  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh----hhCCCCeeeee
Q 012647          130 AFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVPWSEYR  205 (459)
Q Consensus       130 ~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~G~~v~~v~  205 (459)
                      ++++++++++..       ++.+++   .+|+++++++..  ..+.+||+|+++.|+|..+...+    +..|++++.+|
T Consensus         2 ~l~~~la~~~g~-------~~~i~~---~sG~~a~~~~~~--~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   69 (331)
T 1pff_A            2 ALEGKIAKLEHA-------EACAAT---ASGMGAIAASVW--TFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFID   69 (331)
T ss_dssp             HHHHHHHHHHTC-------SEEEEE---SSHHHHHHHHHH--HHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred             hHHHHHHHHhCC-------CeEEEe---CChHHHHHHHHH--HhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeC
Confidence            689999999743       344554   555999999843  34679999999999999887665    45899888886


Q ss_pred             eecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh-cCCeeEEeccCCCCCCCCCCCChh
Q 012647          206 YYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE-KNHIPFFDVAYQGFASGSLDNDAS  284 (459)
Q Consensus       206 ~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~-~~~~ii~Deay~~~~~~~~~~~~~  284 (459)
                      .       .|++.+++.+++   +++++++++|+||||.+++   +++|.++|++ +|+++|+|++|.......      
T Consensus        70 ~-------~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~~------  130 (331)
T 1pff_A           70 M-------AVPGNIEKHLKP---NTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTN------  130 (331)
T ss_dssp             T-------TSTTHHHHTCCT---TEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCC------
T ss_pred             C-------CCHHHHHHhhcC---CCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccCC------
Confidence            5       378889888875   7888999999999999974   8889999999 999999999987554220      


Q ss_pred             HHHHHHhcCCeEEEEEcCCcCcccCCCC-cceEEEEeCCh-hHHHHHHHHHHhhccc-cccCCchHHHHHHHHH
Q 012647          285 SVRLFATRGMELLVAQSYSKNLGLYAER-IGAMNVVCSSS-DLAARVKSQLKRLARP-MYSNPPVHGARIVANV  355 (459)
Q Consensus       285 ~~~~~~~~~~~~i~~~S~SK~~~~~G~R-iG~~~~v~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  355 (459)
                      .+     ..+.++++.|+||.++.+|.| +||+++   ++ +    +.+.+...... ...+.+..++.++...
T Consensus       131 ~~-----~~~~d~~~~s~~K~~~~~~~r~~G~~~~---~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~  192 (331)
T 1pff_A          131 PL-----DLGVDIVVHSATKYINGHTDVVAGLVCS---RADI----IAKVKSQGIKDITGAIISPHDAWLITRG  192 (331)
T ss_dssp             GG-----GGTCSEEEEETTTTTSSSSSCCCEEEEE---CHHH----HHHHHHTCCCCCCCCCCCHHHHHHHHHH
T ss_pred             hh-----hcCCcEEEEECccccCCCCCceEEEEEe---CcHH----HHHHHHHHHHhhcCCCCCHHHHHHHHcC
Confidence            11     234689999999999999999 789865   65 6    44445544443 3335566665554333

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.93  E-value=5.7e-25  Score=216.31  Aligned_cols=300  Identities=15%  Similarity=0.096  Sum_probs=203.6

Q ss_pred             CcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH-hCCCCEE
Q 012647          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKV  180 (459)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~-~~~gd~V  180 (459)
                      +++.+.+++.+.+..+   .|.+..+..++|+++++++..        +++++  ++|||++++++  +... +.+||+|
T Consensus        14 ~~~~v~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~~~~--~~sGt~al~~a--l~~~~~~~gd~V   78 (367)
T 3nyt_A           14 IKDKIDAGIQRVLRHG---QYILGPEVTELEDRLADFVGA--------KYCIS--CANGTDALQIV--QMALGVGPGDEV   78 (367)
T ss_dssp             HHHHHHHHHHHHHHHC---CCSSCHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHTTCCTTCEE
T ss_pred             cCHHHHHHHHHHHhcC---CccCChHHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH--HHHhCCCCcCEE
Confidence            4788999998887653   466778899999999999743        36777  89999999998  3433 5699999


Q ss_pred             EEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Q 012647          181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE  260 (459)
Q Consensus       181 lv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~  260 (459)
                      +++.|+|..+...++..|++++.++++ ++++.+|++.+++++++   ++++++   |+||||..   .++++|.++|++
T Consensus        79 i~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~d~~~l~~~i~~---~~~~v~---~~~~~G~~---~~~~~i~~la~~  148 (367)
T 3nyt_A           79 ITPGFTYVATAETVALLGAKPVYVDID-PRTYNLDPQLLEAAITP---RTKAII---PVSLYGQC---ADFDAINAIASK  148 (367)
T ss_dssp             EEESSSCTHHHHHHHHTTCEEEEECBC-TTTCSBCGGGTGGGCCT---TEEEEC---CBCGGGCC---CCHHHHHHHHHH
T ss_pred             EECCCccHHHHHHHHHcCCEEEEEecC-CccCCcCHHHHHHhcCc---CCcEEE---eeCCccCh---hhHHHHHHHHHH
Confidence            999999999999999999999999985 34588999999999865   777776   78999987   678889999999


Q ss_pred             cCCeeEEeccCCCCC-CCCCCCChhHHHHHHhcCCeEEEEEcC--CcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhc
Q 012647          261 KNHIPFFDVAYQGFA-SGSLDNDASSVRLFATRGMELLVAQSY--SKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLA  337 (459)
Q Consensus       261 ~~~~ii~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~  337 (459)
                      ||+++|+|++|.... +.+   ...      .... ++++.||  +|.++.+|. .|++  +++++++.+++........
T Consensus       149 ~~~~li~D~a~~~g~~~~~---~~~------~~~~-di~~~Sf~~~K~l~~~g~-gg~~--~~~~~~l~~~~~~~~~~g~  215 (367)
T 3nyt_A          149 YGIPVIEDAAQSFGASYKG---KRS------CNLS-TVACTSFFPSAPLGCYGD-GGAI--FTNDDELATAIRQIARHGQ  215 (367)
T ss_dssp             TTCCBEEECTTTTTCEETT---EET------TSSS-SEEEEECCTTSSSCCSSC-CEEE--EESCHHHHHHHHHHTBTTE
T ss_pred             cCCEEEEECccccCCeECC---eec------cCCC-CEEEEECCCCCcCCCcCc-eeEE--EeCCHHHHHHHHHHHhcCC
Confidence            999999999976422 211   110      1111 5788887  899996687 7777  4566774444433211100


Q ss_pred             c--------ccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc-CCc---c
Q 012647          338 R--------PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL-RQI---G  405 (459)
Q Consensus       338 ~--------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~~~---g  405 (459)
                      .        +.....+.+.+.++...++          .+++..++.+++++++.+.|+ ++++    .+.. +.+   .
T Consensus       216 ~~~~~~~~~g~~~~~~~~~aa~~~~~l~----------~~~~~~~~~~~~~~~~~~~L~-~~~~----~~~~~~~~~~~~  280 (367)
T 3nyt_A          216 DRRYHHIRVGVNSRLDTLQAAILLPKLE----------IFEEEIALRQKVAAEYDLSLK-QVGI----GTPFIEVNNISV  280 (367)
T ss_dssp             EETTEECSCCCBCCCCHHHHHHHHHHHH----------THHHHHHHHHHHHHHHHHHHH-HTTC----CCCCCCTTEECC
T ss_pred             CcCceeeccCcCCCccHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhc-cCCe----eccCCCCCCcee
Confidence            0        0112334444333333222          234556666777888888888 7752    2221 111   1


Q ss_pred             ee-eecCC-CHHHHHHHHhcccEEEcCCC----------------------------cEEEc-cCChhhHHHHHHHHHHH
Q 012647          406 MF-SFTGL-NKAQSDNMTNKWHVYMTKDG----------------------------RISLA-GLSLAKCEYLADAIIDS  454 (459)
Q Consensus       406 ~f-~~~~l-~~~~~~~ll~~~gI~v~~gg----------------------------Ris~~-~~~~e~i~~~~~~l~~~  454 (459)
                      ++ .++.. +.+.+...++++||.+.++.                            |+++. .++++|+++++++|++.
T Consensus       281 ~~~~~~~~~~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~  360 (367)
T 3nyt_A          281 YAQYTVRMDNRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL  360 (367)
T ss_dssp             CSSEEEECSSHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred             eEEEEEEeCCHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence            11 11222 45554444455699776430                            55544 34899999999998753

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.93  E-value=5.9e-25  Score=223.13  Aligned_cols=297  Identities=15%  Similarity=0.079  Sum_probs=194.6

Q ss_pred             cHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCC---CEEEEcCCCCcchH----HHhhhCCCC
Q 012647          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG---AKVLISSPTWGNHK----NIFNDARVP  200 (459)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~g---d~Vlv~~p~y~~~~----~~~~~~G~~  200 (459)
                      ..++++.+++++...      +++|++  |+|+|++++++  +...+.+|   ++|+++.|+|+...    ..++..|++
T Consensus       113 ~~~l~~~la~~~g~~------~~~v~~--t~g~t~al~~~--~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~  182 (465)
T 3e9k_A          113 DESIVGLMKDIVGAN------EKEIAL--MNALTVNLHLL--MLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLN  182 (465)
T ss_dssp             THHHHGGGHHHHTCC------GGGEEE--CSCHHHHHHHH--HHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHcCCC------cCCEEE--ECCHHHHHHHH--HHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCc
Confidence            467899999987543      689999  99999999998  33335555   45999999998744    366678988


Q ss_pred             eee--eeee-cCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCC
Q 012647          201 WSE--YRYY-DPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASG  277 (459)
Q Consensus       201 v~~--v~~~-~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~  277 (459)
                      ++.  +++. .++++.+|++++++++++..++++++++++||||||.+++   +++|.++|++||+++|+|+++..... 
T Consensus       183 ~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~la~~~g~~vi~D~a~~~g~~-  258 (465)
T 3e9k_A          183 IEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFN---IPAITKAGQAKGCYVGFDLAHAVGNV-  258 (465)
T ss_dssp             HHHHEEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTS-
T ss_pred             ceeeeEEEecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeec---HHHHHHHHHHcCCEEEEEhhhhcCCc-
Confidence            643  2221 1456789999999999742237889999999999999965   67899999999999999999654321 


Q ss_pred             CCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHh---------h------------
Q 012647          278 SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKR---------L------------  336 (459)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~---------~------------  336 (459)
                      ..     .+    ...+.++++.|++|.++....++|++++   +++..+.+...+..         .            
T Consensus       259 ~~-----~~----~~~~~D~~~~s~~K~l~~gp~~~g~l~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  326 (465)
T 3e9k_A          259 EL-----YL----HDWGVDFACWCSYKYLNAGAGGIAGAFI---HEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGV  326 (465)
T ss_dssp             CC-----CH----HHHTCCEEEECSSSTTCCCTTCCCEEEE---CGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSG
T ss_pred             CC-----ch----hhcCCCEEEECcccccccCCCceEEEEE---cHHHHhhcCCcccCccCCCCCcccccCCCcCcCCCh
Confidence            11     11    1223568899999999322236899976   66643322110000         0            


Q ss_pred             ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-------CCCcccccCC----cc
Q 012647          337 ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS-------GKDWSFILRQ----IG  405 (459)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~-------~~~~~~~~~~----~g  405 (459)
                      .+...++++..+..++...+.   +.+.  ..+++++++++++++++.+.|+ ++-.       ..+++++.|.    .|
T Consensus       327 ~~~~~gt~~~~~~~a~~aal~---~~~~--~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~g~~~~~p~~~~~~g  400 (465)
T 3e9k_A          327 CGFRISNPPILLVCSLHASLE---IFKQ--ATMKALRKKSVLLTGYLEYLIK-HNYGKDKAATKKPVVNIITPSHVEERG  400 (465)
T ss_dssp             GGGCCSCCCHHHHHHHHHHHH---HHHH--HCHHHHHHHHHHHHHHHHHHHH-HHCC---------CEEECSCSSGGGBC
T ss_pred             HHhccCCccHHHHHHHHHHHH---HHHH--cCHHHHHHHHHHHHHHHHHHHH-hhccccccccCCCCeEEeCCCCHhhcc
Confidence            000011344433333333321   1111  1368889999999999999998 6300       0125666554    24


Q ss_pred             eeeecC--CC-HHHHHHHHhcccEEEcCCC----cEEE-cc-CChhhHHHHHHHHHHHHhh
Q 012647          406 MFSFTG--LN-KAQSDNMTNKWHVYMTKDG----RISL-AG-LSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       406 ~f~~~~--l~-~~~~~~ll~~~gI~v~~gg----Ris~-~~-~~~e~i~~~~~~l~~~~~~  457 (459)
                      .++++.  .+ .++.+.|.+ +||.+..++    |||+ .. .+++++++++++|++++++
T Consensus       401 ~~~~~~~~~~~~~l~~~L~~-~Gi~v~~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~  460 (465)
T 3e9k_A          401 CQLTITFSVPNKDVFQELEK-RGVVCDKRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS  460 (465)
T ss_dssp             SCEEEEECCTTCCHHHHHHT-TTEECEEETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred             cEEEEEecCCHHHHHHHHHH-CCEEEecCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence            444432  22 345666665 599886542    9997 23 3889999999999999875

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.93  E-value=5.7e-25  Score=223.98  Aligned_cols=331  Identities=12%  Similarity=0.111  Sum_probs=210.9

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCC------CCCcccHHHHHHHHHHHhcCCCCcccc--CceEE
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY------LPIEGLAAFNKVTAELLFGADNSVLKE--QRVAT  154 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y------~~~~g~~~lr~aia~~l~~~~~~~~~~--~~i~~  154 (459)
                      .+.|+|..+++       ++++.|++++.+.+.+....+|      ....+..++++.+.+++...+|...+.  .+|++
T Consensus        44 ~~~i~L~a~e~-------~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~  116 (483)
T 1rv3_A           44 RVGLELIASEN-------FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQP  116 (483)
T ss_dssp             HSSEECCTTCC-------CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCC
T ss_pred             hcCeEEEcCCC-------CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEE
Confidence            46899977653       2489999999988864321233      333455677766655555555543211  23666


Q ss_pred             eecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH--------hhhCCCCeeeeeee-cCCCCCCCHHHHHHHHHc
Q 012647          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI--------FNDARVPWSEYRYY-DPKTVGLDFEGMIADIKA  225 (459)
Q Consensus       155 ~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~--------~~~~G~~v~~v~~~-~~~~~~~d~e~l~~~i~~  225 (459)
                        ++|+ +++..+  +.+.+.|||+|++++|+|..+...        ++..|..++.+++. +++++.+|++++++++++
T Consensus       117 --~sGs-~an~~~--~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~  191 (483)
T 1rv3_A          117 --YSGS-PANFAV--YTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARL  191 (483)
T ss_dssp             --SSHH-HHHHHH--HHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH
T ss_pred             --CCcH-HHHHHH--HHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhh
Confidence              6666 777776  445578999999999998877542        23334335555542 235688999999999983


Q ss_pred             CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEEcCCc
Q 012647          226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSK  304 (459)
Q Consensus       226 ~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  304 (459)
                        ++++++++ +++||+ .++   ++++|.++|+++|+++|+|++|. ++.+.+..  ...+    .  ..++++.|+||
T Consensus       192 --~~tklIi~-~~sn~~-~~~---dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~--~~p~----~--~~div~~s~~K  256 (483)
T 1rv3_A          192 --FHPKLIIA-GTSCYS-RNL---DYGRLRKIADENGAYLMADMAHISGLVVAGVV--PSPF----E--HCHVVTTTTHK  256 (483)
T ss_dssp             --HCCSEEEE-CCSSCC-SCC---CHHHHHHHHHHTTCEEEEECTTTHHHHHHTSS--CCGG----G--TCSEEEEESSG
T ss_pred             --cCCcEEEE-eCCcCC-CcC---CHHHHHHHHHHcCCEEEEEccchhcccccCCC--CCCC----C--CCcEEEecCcc
Confidence              16677777 889998 774   47889999999999999999965 22221111  1111    1  23588899999


Q ss_pred             CcccCCCCcceEEEEeCCh--------------hHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012647          305 NLGLYAERIGAMNVVCSSS--------------DLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME  370 (459)
Q Consensus       305 ~~~~~G~RiG~~~~v~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~  370 (459)
                      .+  .|+|.||+++  +++              +..+.+......   ...++++.....+....+...  .   ...++
T Consensus       257 ~l--~GprgG~i~~--~~~~~~~~~~~g~~~~y~~~~~~~~~~~~---~~~g~~~~~~iaal~~Al~~~--~---~~~~~  324 (483)
T 1rv3_A          257 TL--RGCRAGMIFY--RRGVRSVDPKTGKEILYNLESLINSAVFP---GLQGGPHNHAIAGVAVALKQA--M---TPEFK  324 (483)
T ss_dssp             GG--CCCSCEEEEE--ECSBCC-------CCBCCHHHHHHHHHTT---TTCCSCCHHHHHHHHHHHHHH--T---SHHHH
T ss_pred             cC--CCCCceEEEE--cchhhhhccccCcchhhHHHHHhhhhcCC---cccCCccHHHHHHHHHHHHHH--h---ChhHH
Confidence            87  5889999965  332              222222211111   112233333222222222110  0   12356


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCcccccCC-cceeeec-----CCCHHHHHHHHhcccEEEc----CC-------C-
Q 012647          371 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ-IGMFSFT-----GLNKAQSDNMTNKWHVYMT----KD-------G-  432 (459)
Q Consensus       371 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~-~g~f~~~-----~l~~~~~~~ll~~~gI~v~----~g-------g-  432 (459)
                      ++.++++++++++.+.|. ++|    +++..+. ..++.|+     +++.+.+.++++++||.+.    ||       + 
T Consensus       325 ~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~  399 (483)
T 1rv3_A          325 EYQRQVVANCRALSAALV-ELG----YKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSG  399 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HTT----CEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCE
T ss_pred             HHHHHHHHHHHHHHHHHH-hcC----CEeccCCCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCCcCCCCce
Confidence            788889999999999999 776    5665543 2345554     3466667777777899998    65       1 


Q ss_pred             -cEEEccC-C----hhhHHHHHHHHHHHHhh
Q 012647          433 -RISLAGL-S----LAKCEYLADAIIDSYHN  457 (459)
Q Consensus       433 -Ris~~~~-~----~e~i~~~~~~l~~~~~~  457 (459)
                       |||++.. +    ++++++++++|.++++.
T Consensus       400 iRis~~~~~t~g~~~edi~~~~~~l~~~l~~  430 (483)
T 1rv3_A          400 LRLGTPALTSRGLLEKDFQKVAHFIHRGIEL  430 (483)
T ss_dssp             EEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence             9998754 3    79999999999988764

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.93  E-value=2.9e-24  Score=212.78  Aligned_cols=253  Identities=13%  Similarity=0.070  Sum_probs=172.0

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----hhhCCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARV  199 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~G~  199 (459)
                      +..+..++++++++++..       ++.|++  ++| +++++++.+.  .+.+||+|+++.|+|......    ++..|+
T Consensus        50 ~~~~~~~l~~~la~~~~~-------~~~i~~--~sG-t~a~~~~~~~--~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~  117 (386)
T 1cs1_A           50 GNPTRDVVQRALAELEGG-------AGAVLT--NTG-MSAIHLVTTV--FLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY  117 (386)
T ss_dssp             CCHHHHHHHHHHHHHHTC-------SEEEEE--SSH-HHHHHHHHHH--HCCTTCEEEEETTCCHHHHHHHHHHHTTTSC
T ss_pred             CCccHHHHHHHHHHHhCC-------CcEEEe--CCH-HHHHHHHHHH--HhCCCCEEEEecCCcHhHHHHHHHHHHhcCC
Confidence            567789999999999754       255665  555 9999998433  367999999999999874433    467788


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~  279 (459)
                      +++.+|.       .|++.+++++++   +++++++++|+||||.++   ++++|.++|++||+++|+||+|..+.... 
T Consensus       118 ~~~~~~~-------~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~---~l~~i~~l~~~~~~~li~De~~~~~~~~~-  183 (386)
T 1cs1_A          118 RVLFVDQ-------GDEQALRAALAE---KPKLVLVESPSNPLLRVV---DIAKICHLAREVGAVSVVDNTFLSPALQN-  183 (386)
T ss_dssp             EEEEECT-------TCHHHHHHHHHT---CCSEEEEECSCTTTCCCC---CHHHHHHHHHHTTCEEEEECTTTCTTTCC-
T ss_pred             EEEEeCC-------CCHHHHHHhhcc---CCcEEEEeCCCCCCCccc---CHHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence            8888875       289999999986   677888899999999996   47889999999999999999998876431 


Q ss_pred             CCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc-ceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCC
Q 012647          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN  358 (459)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  358 (459)
                           ..     ..+.++++.|+||.++.+|.|+ ||+++  +++++.+.+.....    ......+..++.++...++.
T Consensus       184 -----~~-----~~~~di~~~s~sK~~~~~~~~~~G~~~~--~~~~l~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~  247 (386)
T 1cs1_A          184 -----PL-----ALGADLVLHSCTKYLNGHSDVVAGVVIA--KDPDVVTELAWWAN----NIGVTGGAFDSYLLLRGLRT  247 (386)
T ss_dssp             -----GG-----GGTCSEEEEETTTTTTCSSCCCCEEEEE--SSHHHHHHHHHHHH----HHTCBCCHHHHHHHHHHHTT
T ss_pred             -----cc-----ccCceEEEEcCcccccCCCCceeEEEEe--CcHHHHHHHHHHHH----hcCCCCCHHHHHHHHhcccH
Confidence                 11     1246789999999999899998 98854  33465555543322    21223455555555444432


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC------CC-----Ccccc----cCCcceeeec-CCCHHHHHHHHh
Q 012647          359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS------GK-----DWSFI----LRQIGMFSFT-GLNKAQSDNMTN  422 (459)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~------~~-----~~~~~----~~~~g~f~~~-~l~~~~~~~ll~  422 (459)
                                +....+.+.++++.+.+.|+ +++.      +.     ++++.    ...++++.|. .-..+.+...++
T Consensus       248 ----------~~~~~~~~~~~~~~l~~~l~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  316 (386)
T 1cs1_A          248 ----------LVPRMELAQRNAQAIVKYLQ-TQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLG  316 (386)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHT-TCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHh-cCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCCHHHHHHHHH
Confidence                      23344556666777777776 5421      10     01111    1125655443 212455666666


Q ss_pred             cccEEEc
Q 012647          423 KWHVYMT  429 (459)
Q Consensus       423 ~~gI~v~  429 (459)
                      ++||.+.
T Consensus       317 ~~gi~~~  323 (386)
T 1cs1_A          317 GLSLFTL  323 (386)
T ss_dssp             TCSSSEE
T ss_pred             hCCcceE
Confidence            7899886

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.93  E-value=1.8e-24  Score=214.85  Aligned_cols=302  Identities=15%  Similarity=0.032  Sum_probs=197.9

Q ss_pred             ccCcHHHHHHHHHHhhcCCCCCCCCCcc--cHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH-hCC
Q 012647          100 PYVLDVVKKAENLMLERGENKEYLPIEG--LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFP  176 (459)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~~~~g--~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~-~~~  176 (459)
                      |.+++++.+++.+.+..    .|.+..|  ..++|+++++++..        +++++  ++||+++++++  +... +.+
T Consensus         8 p~~~~~v~~a~~~~~~~----~~~~~~g~~~~~l~~~la~~~~~--------~~v~~--~~ggt~al~~~--~~~l~~~~   71 (394)
T 1o69_A            8 PHMGGNELKYIEEVFKS----NYIAPLGEFVNRFEQSVKDYSKS--------ENALA--LNSATAALHLA--LRVAGVKQ   71 (394)
T ss_dssp             ----CCHHHHHHHHHHH----TTTSCTTHHHHHHHHHHHHHHCC--------SEEEE--ESCHHHHHHHH--HHHTTCCT
T ss_pred             CCCCHHHHHHHHHHHHc----CCccCCChHHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH--HHHcCCCC
Confidence            44577888998888754    3656567  89999999999742        57888  99999999998  3333 569


Q ss_pred             CCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 012647          177 GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD  256 (459)
Q Consensus       177 gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~  256 (459)
                      ||+|+++.|+|..+...++..|++++.+|++  +++.+|++.+++++++.++++++++++   ||||..   +++++|.+
T Consensus        72 gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~v~~~---~~~G~~---~~l~~i~~  143 (394)
T 1o69_A           72 DDIVLASSFTFIASVAPICYLKAKPVFIDCD--ETYNIDVDLLKLAIKECEKKPKALILT---HLYGNA---AKMDEIVE  143 (394)
T ss_dssp             TCEEEEESSSCGGGTHHHHHTTCEEEEECBC--TTSSBCHHHHHHHHHHCSSCCCEEEEE---CGGGCC---CCHHHHHH
T ss_pred             CCEEEECCCccHHHHHHHHHcCCEEEEEEeC--CCCCcCHHHHHHHHhcccCCceEEEEE---CCCCCh---hhHHHHHH
Confidence            9999999999999999999999999999984  567899999999998632245666654   499977   78899999


Q ss_pred             HHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHh
Q 012647          257 VIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKR  335 (459)
Q Consensus       257 l~~~~~~~ii~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~  335 (459)
                      +|+++|+++|+|++|. ++.+.+.  ..      ....+  +.+.||||..+++|.|+||+++  +++++++.+...   
T Consensus       144 l~~~~~~~li~Dea~~~g~~~~~~--~~------~~~~~--~~~~s~s~~K~l~~~~~G~~~~--~~~~l~~~l~~~---  208 (394)
T 1o69_A          144 ICKENDIVLIEDAAEALGSFYKNK--AL------GTFGE--FGVYSYNGNKIITTSGGGMLIG--KNKEKIEKARFY---  208 (394)
T ss_dssp             HHHHTTCEEEEECTTCTTCEETTE--ET------TSSSS--EEEEECCTTSSSCCSSCEEEEE--SCHHHHHHHHHH---
T ss_pred             HHHHcCCEEEEECcCcccceeCCc--cc------ccccC--cEEEEEeCCccCCCCCceEEEE--CCHHHHHHHHHH---
Confidence            9999999999999987 4543221  00      01112  3445554333445678999954  446755554432   


Q ss_pred             hccccccC--------------CchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012647          336 LARPMYSN--------------PPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  401 (459)
Q Consensus       336 ~~~~~~~~--------------~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  401 (459)
                       .......              .+.+.+.++...++          .+++..++++++++++.+.|+ ++ +    ++..
T Consensus       209 -~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~----------~l~~~~~~~~~~~~~l~~~L~-~~-~----~~~~  271 (394)
T 1o69_A          209 -STQARENCLHYEHLDYGYNYRLSNVLGAIGVAQME----------VLEQRVLKKREIYEWYKEFLG-EY-F----SFLD  271 (394)
T ss_dssp             -TBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHT----------THHHHHHHHHHHHHHHHHHHT-TT-E----ECCC
T ss_pred             -HHhccccCccccccccCcccCcCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhc-cc-c----cccC
Confidence             1111101              12222222211121          245567888888999999998 64 2    2222


Q ss_pred             CC----cce-eee--cC-----------------------CCHHHHHHHHhcccEEEcCCC-------------------
Q 012647          402 RQ----IGM-FSF--TG-----------------------LNKAQSDNMTNKWHVYMTKDG-------------------  432 (459)
Q Consensus       402 ~~----~g~-f~~--~~-----------------------l~~~~~~~ll~~~gI~v~~gg-------------------  432 (459)
                      +.    .++ +++  ++                       ++.+.+...+.++||.++++.                   
T Consensus       272 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~  351 (394)
T 1o69_A          272 ELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGN  351 (394)
T ss_dssp             CCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSH
T ss_pred             CCCCCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChH
Confidence            21    232 122  22                       123334444445799998771                   


Q ss_pred             ----------cEEEccCChhhHHHHHHHHHHHHhh
Q 012647          433 ----------RISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       433 ----------Ris~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                                |.+....+++|+++++++|+++++.
T Consensus       352 ~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~~  386 (394)
T 1o69_A          352 SELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA  386 (394)
T ss_dssp             HHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHhc
Confidence                      1111124899999999999988754

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.93  E-value=3.9e-25  Score=217.91  Aligned_cols=303  Identities=15%  Similarity=0.047  Sum_probs=202.9

Q ss_pred             CcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH-hCCCCEE
Q 012647          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKV  180 (459)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~-~~~gd~V  180 (459)
                      +++.+.+++.+.+...   .|.+..+..++|+++++++..        +++++  ++|||++++++  +... +.+||+|
T Consensus        15 ~~~~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~~i~--~~sgt~al~~~--l~~l~~~~gd~V   79 (373)
T 3frk_A           15 IEYEIKFKFEEIYKRN---WFILGDEDKKFEQEFADYCNV--------NYCIG--CGNGLDALHLI--LKGYDIGFGDEV   79 (373)
T ss_dssp             HHHHHHHHHHHHHHHT---CCSSSHHHHHHHHHHHHHHTS--------SEEEE--ESCHHHHHHHH--HHHTTCCTTCEE
T ss_pred             CCHHHHHHHHHHHHCC---CccCCchHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHHHH--HHHcCCCCcCEE
Confidence            4788889888887653   367788999999999999743        36777  89999999998  4444 5699999


Q ss_pred             EEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Q 012647          181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE  260 (459)
Q Consensus       181 lv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~  260 (459)
                      +++.|+|..+...++..|++++.++++ ++++.+|++++++++++   ++++++   |+||||..   .++++|.++|++
T Consensus        80 i~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~l~~---~~~~v~---~~n~~G~~---~~l~~i~~l~~~  149 (373)
T 3frk_A           80 IVPSNTFIATALAVSYTGAKPIFVEPD-IRTYNIDPSLIESAITE---KTKAII---AVHLYGQP---ADMDEIKRIAKK  149 (373)
T ss_dssp             EEETTSCTHHHHHHHHHSCEEEEECEE-TTTTEECGGGTGGGCCT---TEEEEE---EECCTTCC---CCHHHHHHHHHH
T ss_pred             EECCCCcHHHHHHHHHcCCEEEEEecc-ccccCcCHHHHHHhcCC---CCeEEE---EECCCcCc---ccHHHHHHHHHH
Confidence            999999999999999999999999996 35688999999998875   677776   78999998   667889999999


Q ss_pred             cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCC--cCcccCCCCcceEEEEeCChhHHHHHHHHHHhhcc
Q 012647          261 KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS--KNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLAR  338 (459)
Q Consensus       261 ~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~  338 (459)
                      ||+++|+|++|......+  ....      ... .++++.|||  |.++.+|. .|++  ++.+++..+++.........
T Consensus       150 ~~~~li~D~a~~~g~~~~--~~~~------~~~-~d~~~~S~~~~K~l~~~g~-gg~~--~~~~~~~~~~~~~~~~~g~~  217 (373)
T 3frk_A          150 YNLKLIEDAAQAHGSLYK--GMKV------GSL-GDAAGFSFYPAKNLGSLGD-GGAV--VTNDKDLAEKIKALSNYGSE  217 (373)
T ss_dssp             HTCEEEEECTTCTTCEET--TEET------TSS-SSEEEEECCTTSSSCCSSS-CEEE--EESCHHHHHHHHHHHBTTCS
T ss_pred             cCCEEEEECCcccCCEEC--CEec------ccc-ccEEEEeCcCCCccCccce-eEEE--EeCCHHHHHHHHHHHhcCcc
Confidence            999999999976533210  1111      111 247778877  88874354 6676  45556644444332211100


Q ss_pred             --------ccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc-CCcceee-
Q 012647          339 --------PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL-RQIGMFS-  408 (459)
Q Consensus       339 --------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~~~g~f~-  408 (459)
                              ......+.+.+.+....+          +.+++..++.+++.+++.+.|+ +++    +.+.. +.++... 
T Consensus       218 ~~~~~~~~g~~~~~~~~~aa~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~-~~~----~~~~~~~~~~~~~~  282 (373)
T 3frk_A          218 KKYHHIYKGFNSRLDELQAGFLRVKL----------KYLDKWNEERRKIAQKYIAGIN-NPN----VIIPVEADYAKHVW  282 (373)
T ss_dssp             BTTBCCSCCCBCCCCHHHHHHHHHHH----------HTHHHHHHHHHHHHHHHHHHCC-CTT----EECCCCCTTEECCC
T ss_pred             cCCccccccccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhc-cCc----eEeccCCCCCceee
Confidence                    001112333322222111          2245666777778888888888 664    23221 1222111 


Q ss_pred             --e--cCCCHHHHHHHHhcccEEEcCC-----------------------------C--cEEEcc-CChhhHHHHHHHHH
Q 012647          409 --F--TGLNKAQSDNMTNKWHVYMTKD-----------------------------G--RISLAG-LSLAKCEYLADAII  452 (459)
Q Consensus       409 --~--~~l~~~~~~~ll~~~gI~v~~g-----------------------------g--Ris~~~-~~~e~i~~~~~~l~  452 (459)
                        +  ...+.+.+.+.++++||.+.++                             +  |+++.. .|++|+++++++|+
T Consensus       283 ~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~  362 (373)
T 3frk_A          283 YTFVIRSEKRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKIN  362 (373)
T ss_dssp             SSEEEEESSHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             EEEEEEeCCHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHH
Confidence              1  1224544444444469988732                             1  676654 38999999999998


Q ss_pred             HHHh
Q 012647          453 DSYH  456 (459)
Q Consensus       453 ~~~~  456 (459)
                      +...
T Consensus       363 ~~~~  366 (373)
T 3frk_A          363 AWKL  366 (373)
T ss_dssp             TCC-
T ss_pred             HHhh
Confidence            7654

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.93  E-value=7.7e-25  Score=217.90  Aligned_cols=192  Identities=13%  Similarity=0.072  Sum_probs=141.9

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HhhhCCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARV  199 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~G~  199 (459)
                      +..+..+||+++++++..       ++.|++  + +|++++.++.  . .+.+||+|++++|+|.....    .++..|+
T Consensus        65 ~~p~~~~l~~~la~~~g~-------~~~i~~--~-sG~~ai~~~~--~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~  131 (403)
T 3cog_A           65 GNPTRNCLEKAVAALDGA-------KYCLAF--A-SGLAATVTIT--H-LLKAGDQIICMDDVYGGTNRYFRQVASEFGL  131 (403)
T ss_dssp             -CHHHHHHHHHHHHHHTC-------SEEEEE--S-CHHHHHHHHH--T-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTC
T ss_pred             CCchHHHHHHHHHHHhCC-------CcEEEE--C-CHHHHHHHHH--H-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCC
Confidence            557788999999999754       245665  5 4568998873  3 46799999999999987444    3467899


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC-CeeEEeccCCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN-HIPFFDVAYQGFASGS  278 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~-~~ii~Deay~~~~~~~  278 (459)
                      +++.+|.+       |++.+++++++   +++++++++|+||||.+++   +++|+++|+++| +++|+|++|..+.+..
T Consensus       132 ~v~~v~~~-------d~~~l~~~i~~---~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~~~~  198 (403)
T 3cog_A          132 KISFVDCS-------KIKLLEAAITP---ETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYFQR  198 (403)
T ss_dssp             EEEEECTT-------SHHHHHHHCCT---TEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTTCC
T ss_pred             EEEEECCC-------CHHHHHHhcCc---CCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccccCC
Confidence            99988762       78999998875   7889999999999999975   888999999999 9999999998876431


Q ss_pred             CCCChhHHHHHHhcCCeEEEEEcCCcCcccCCC-CcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhC
Q 012647          279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVG  357 (459)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  357 (459)
                            .+    + .+.++++.|+||.++.+|. |+||++  ++++++.+.+.....    ......+.+.+.++...|+
T Consensus       199 ------~~----~-~~~div~~S~sK~~~g~~~~~~G~v~--~~~~~l~~~l~~~~~----~~g~~~~~~~~~~~~~~l~  261 (403)
T 3cog_A          199 ------PL----A-LGADISMYSATKYMNGHSDVVMGLVS--VNCESLHNRLRFLQN----SLGAVPSPIDCYLCNRGLK  261 (403)
T ss_dssp             ------TT----T-TTCSEEEEETTTTTTCSSCCCCEEEE--ECCHHHHHHHHHHHH----HHCCCCCHHHHHHHHHHHT
T ss_pred             ------cc----c-cCCeEEEEcChhhccCCCCCeEEEEE--ECcHHHHHHHHHHHH----hcCCCCCHHHHHHHHhhhh
Confidence                  11    1 2467999999999987764 799984  445675555443322    2222455566666665665


Q ss_pred             C
Q 012647          358 N  358 (459)
Q Consensus       358 ~  358 (459)
                      .
T Consensus       262 ~  262 (403)
T 3cog_A          262 T  262 (403)
T ss_dssp             T
T ss_pred             H
Confidence            4

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.93  E-value=5.2e-24  Score=211.11  Aligned_cols=276  Identities=14%  Similarity=0.069  Sum_probs=187.8

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----hhhCCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARV  199 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~G~  199 (459)
                      +.....++++++++++..       + +.++  +.+|++++.++  +...+.+||+|+++.|+|..+...    ++..|+
T Consensus        57 ~~~~~~~l~~~la~~~g~-------~-~~i~--~~sG~~ai~~~--~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~  124 (389)
T 3acz_A           57 GNPTVEQFEEMVCSIEGA-------A-GSAA--FGSGMGAISSS--TLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGI  124 (389)
T ss_dssp             CCHHHHHHHHHHHHHHTC-------S-EEEE--ESSHHHHHHHH--HTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred             CChHHHHHHHHHHHHhCC-------C-eEEE--eCCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCC
Confidence            456778999999999743       2 4555  67788999988  333367999999999999976555    577899


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~  279 (459)
                      +++.+|.       .|++.+++++++   +++++++++|+||||.+++   +++|.++|++||+++|+|++|..+.... 
T Consensus       125 ~~~~v~~-------~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~~-  190 (389)
T 3acz_A          125 EVDLIDT-------SDVEKVKAAWKP---NTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFLK-  190 (389)
T ss_dssp             EEEEECT-------TCHHHHHHTCCT---TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCC-
T ss_pred             EEEEECC-------CCHHHHHHhcCC---CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccccC-
Confidence            9988876       388999998875   7889999999999999964   7889999999999999999988765321 


Q ss_pred             CCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc-ceEEEEeCCh-hHHHHHHHHHHhhccccccCCchHHHHHHHHHhC
Q 012647          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSS-DLAARVKSQLKRLARPMYSNPPVHGARIVANVVG  357 (459)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  357 (459)
                           .+    + .+.++++.|+||.++.+|.|+ ||+++   ++ +.++.+......    .....+...+.++...|+
T Consensus       191 -----~~----~-~~~di~~~S~sK~~~~~~~~~~G~v~~---~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~l~  253 (389)
T 3acz_A          191 -----PL----E-LGADIALHSVSKYINGHGDVIGGVSSA---KTAEDIATIKFYRKD----AGSLMAPMDAFLCARGMK  253 (389)
T ss_dssp             -----GG----G-TTCSEEEEETTTTTTCSSCCCCEEEEE---SSHHHHHHHHHHHHH----HCCCCCHHHHHHHHHHHT
T ss_pred             -----cc----c-cCCeEEEECChhhccCCCCceeEEEEE---CcHHHHHHHHHHHHh----cCCCCCHHHHHHHHcCcc
Confidence                 11    1 246789999999999999999 99855   55 755555433221    122344455555555554


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC------CC-----Cccccc----CCcceeeecCC-CHHHHHHHH
Q 012647          358 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS------GK-----DWSFIL----RQIGMFSFTGL-NKAQSDNMT  421 (459)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~------~~-----~~~~~~----~~~g~f~~~~l-~~~~~~~ll  421 (459)
                      ..          ....++..++.+.+.+.|+ +.+.      |.     ++.+..    ..++++.+. + ..+.+.+++
T Consensus       254 ~l----------~~r~~~~~~~~~~l~~~l~-~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~-l~~~~~~~~~l  321 (389)
T 3acz_A          254 TL----------PIRMQIHMENGLKVAKFLE-QHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFE-MKSFEAAKKLM  321 (389)
T ss_dssp             TH----------HHHHHHHHHHHHHHHHHHH-HCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEE-ESSHHHHHHHH
T ss_pred             HH----------HHHHHHHHHHHHHHHHHHH-cCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEE-ECCHHHHHHHH
Confidence            32          2222333444555555554 3310      00     112211    125555432 2 256677777


Q ss_pred             hcccEEEcC---C-----------------------------C--cEEEccCChhhHHHHHHHHHHHHhh
Q 012647          422 NKWHVYMTK---D-----------------------------G--RISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       422 ~~~gI~v~~---g-----------------------------g--Ris~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                      ++.||.+.+   |                             +  |||++.   ++++.+++.|.++++.
T Consensus       322 ~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~---~~~~~li~~l~~al~~  388 (389)
T 3acz_A          322 EHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGI---ENVDDIIADLKQALEL  388 (389)
T ss_dssp             TTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHTC
T ss_pred             HhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence            777876644   2                             2  888865   5788889999888865

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.93  E-value=3.2e-24  Score=214.79  Aligned_cols=323  Identities=15%  Similarity=0.140  Sum_probs=189.9

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC-----CCccc----HH-HHHHHHHHHhcCCCCccccCceE
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL-----PIEGL----AA-FNKVTAELLFGADNSVLKEQRVA  153 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~-----~~~g~----~~-lr~aia~~l~~~~~~~~~~~~i~  153 (459)
                      +.++|..+..      + .+|.|.+++.+.+.......|+     +....    .+ .++.+++++...      + ..+
T Consensus        33 ~~i~l~~~~~------~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------~-~~v   98 (425)
T 3ecd_A           33 SQVELIASEN------I-VSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAG------H-ANV   98 (425)
T ss_dssp             HSEECCTTCC------C-CCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCS------E-EEC
T ss_pred             cceeeecccC------C-CCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCC------C-cee
Confidence            4677765543      2 2899999998877432212221     11111    11 224455554221      2 223


Q ss_pred             EeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcc---hHHHhhhCCCCee--eeeeecCCCCCCCHHHHHHHHHcCCC
Q 012647          154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGN---HKNIFNDARVPWS--EYRYYDPKTVGLDFEGMIADIKAAPG  228 (459)
Q Consensus       154 ~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~---~~~~~~~~G~~v~--~v~~~~~~~~~~d~e~l~~~i~~~~~  228 (459)
                      +  +.||++++.++.  ...+.+||+|++++|+|..   +.......|..+.  .++.+ ++++.+|++++++.+++  +
T Consensus        99 ~--~~~Gs~a~~~al--~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~d~~~l~~~i~~--~  171 (425)
T 3ecd_A           99 Q--PHSGAQANGAVM--LALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVS-RDTMLIDYDQVEALAQQ--H  171 (425)
T ss_dssp             C--CSSHHHHHHHHH--HHHCCTTCEEEEECC------------------CEEEEECCC-TTTSSCCHHHHHHHHHH--H
T ss_pred             e--cCchHHHHHHHH--HHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCC-cccCccCHHHHHHHHhh--c
Confidence            4  788899998884  3347799999999999987   3333334555444  55543 34688999999999974  1


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccC-CCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc
Q 012647          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAY-QGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (459)
Q Consensus       229 ~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (459)
                      +++++++++|+||+  .   .++++|.++|++||+++|+||+| .++.+.+..  ...    ...  .++++.||||.+ 
T Consensus       172 ~~~~v~~~~~~~~~--~---~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~--~~~----~~~--~di~~~s~sK~l-  237 (425)
T 3ecd_A          172 KPSLIIAGFSAYPR--K---LDFARFRAIADSVGAKLMVDMAHIAGVIAAGRH--ANP----VEH--AHVVTSTTHKTL-  237 (425)
T ss_dssp             CCSEEEEECSCCCS--C---CCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSS--CCG----GGT--CSEEEEESSGGG-
T ss_pred             CCcEEEEccccCCC--c---CCHHHHHHHHHHcCCEEEEECcChHhhhhcccc--cCc----hhc--CcEEEecCCccc-
Confidence            56677778899974  3   55789999999999999999994 332222110  001    111  248899999988 


Q ss_pred             cCCCCcceEEEEeCChhHHHHHHHHHHhhcccc-ccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          308 LYAERIGAMNVVCSSSDLAARVKSQLKRLARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDS  386 (459)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  386 (459)
                       +|+|.||+++  .+++..+.+..    ..... ..+++...+.++...+..  .   ..+.+++.+++++++++++.+.
T Consensus       238 -~g~~~g~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~a~~~--~---~~~~~~~~~~~~~~~~~~l~~~  305 (425)
T 3ecd_A          238 -RGPRGGFVLT--NDEEIAKKINS----AVFPGLQGGPLMHVIAGKAVAFGE--A---LTDDFKTYIDRVLANAQALGDV  305 (425)
T ss_dssp             -CCCSCEEEEE--SCHHHHHHHHH----HHC-----CCCHHHHHHHHHHHHH--H---TSHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCcEEEEe--CCHHHHHHHHh----hhCccccCCccHHHHHHHHHHHHH--H---HHHhHHHHHHHHHHHHHHHHHH
Confidence             6789999854  44553333332    21121 113333322222222211  0   0133567888999999999999


Q ss_pred             HhhccCCCCCcccccC-CcceeeecC-----CCHHHHHHHHhcccEEEc----CC--------C--cEEEccC-----Ch
Q 012647          387 LSAKDKSGKDWSFILR-QIGMFSFTG-----LNKAQSDNMTNKWHVYMT----KD--------G--RISLAGL-----SL  441 (459)
Q Consensus       387 L~~~~g~~~~~~~~~~-~~g~f~~~~-----l~~~~~~~ll~~~gI~v~----~g--------g--Ris~~~~-----~~  441 (459)
                      |. +.|    +++..+ .+++++|+.     .+.+.+.++++++||.+.    |+        +  ||++...     ++
T Consensus       306 L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~  380 (425)
T 3ecd_A          306 LK-AGG----VDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGA  380 (425)
T ss_dssp             HH-HTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCH
T ss_pred             HH-hCC----CeeccCCCCceEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCH
Confidence            99 776    465543 345566653     356666666677899998    54        1  7764322     47


Q ss_pred             hhHHHHHHHHHHHHhhc
Q 012647          442 AKCEYLADAIIDSYHNV  458 (459)
Q Consensus       442 e~i~~~~~~l~~~~~~~  458 (459)
                      +++++++++|++++++.
T Consensus       381 e~i~~~~~~l~~~l~~~  397 (425)
T 3ecd_A          381 AEFREVGRLILEVFEAL  397 (425)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999999999988753

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.93  E-value=1.9e-24  Score=215.20  Aligned_cols=322  Identities=15%  Similarity=0.163  Sum_probs=203.7

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC------CCcccHHHH----HHHHHHHhcCCCCccccCce
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL------PIEGLAAFN----KVTAELLFGADNSVLKEQRV  152 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~------~~~g~~~lr----~aia~~l~~~~~~~~~~~~i  152 (459)
                      +.+++++.+.|        .++.+.+++.+.+.......|+      ......+++    +++++++...      ++.+
T Consensus        24 ~~~~~~~~~~~--------~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~------~~~i   89 (405)
T 2vi8_A           24 AKIELIASENF--------VSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAE------HANV   89 (405)
T ss_dssp             HSEECCTTCCC--------CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS------EEEC
T ss_pred             cceeeccCccc--------CCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCC------ceEE
Confidence            34666654433        2889999998887432112221      112234444    5788876432      3444


Q ss_pred             EEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH-H--hhhCCC--CeeeeeeecCCCCCCCHHHHHHHHHcCC
Q 012647          153 ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN-I--FNDARV--PWSEYRYYDPKTVGLDFEGMIADIKAAP  227 (459)
Q Consensus       153 ~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~-~--~~~~G~--~v~~v~~~~~~~~~~d~e~l~~~i~~~~  227 (459)
                      ++  ++| ++++.++.+.  .+.+||+|++++|+|..+.. .  +...|.  +++.++++ ++++.+|++++++++++. 
T Consensus        90 ~~--~sG-t~a~~~a~~~--~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~d~~~l~~~i~~~-  162 (405)
T 2vi8_A           90 QP--HSG-AQANMAVYFT--VLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVD-PETHVIDYDDVREKARLH-  162 (405)
T ss_dssp             CC--SSH-HHHHHHHHHH--HCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBC-TTTCSBCHHHHHHHHHHH-
T ss_pred             Ee--cCc-HHHHHHHHHH--hcCCCCEEEEecccccchhcccchhhhccceeEEEecccc-cccCCcCHHHHHHHHHhc-
Confidence            44  555 9999998443  36799999999999987753 1  123343  66666663 246789999999999751 


Q ss_pred             CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc
Q 012647          228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (459)
Q Consensus       228 ~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (459)
                       +++++++ +|+|. |..   .++++|.++|++||+++|+||+|....... +.....    +.  ...++++||||.++
T Consensus       163 -~~~~v~~-~~~~~-~~~---~~l~~i~~l~~~~~~~li~Dea~~~g~~~~-~~~~~~----~~--~~di~~~s~sK~~~  229 (405)
T 2vi8_A          163 -RPKLIVA-AAAAY-PRI---IDFAKFREIADEVGAYLMVDMAHIAGLVAA-GLHPNP----VP--YAHFVTTTTHKTLR  229 (405)
T ss_dssp             -CCSEEEE-CCSSC-CSC---CCHHHHHHHHHHHTCEEEEECTTTHHHHHT-TSSCCS----TT--TCSEEEEESSSTTC
T ss_pred             -CCeEEEE-eCCCC-Ccc---CCHHHHHHHHHHcCCEEEEEcccccccccc-CcCCCc----cc--cCCEEEEeccccCC
Confidence             3455555 44554 344   358899999999999999999987321110 011111    11  23488999999997


Q ss_pred             -cCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHH-HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          308 -LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIV-ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD  385 (459)
Q Consensus       308 -~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  385 (459)
                       ++|   ||+++   ++++.+.+.....    ....+.+...+.++ ...+...  .   .+.+++.+++++++++++.+
T Consensus       230 g~~g---G~~~~---~~~~~~~l~~~~~----~~~~~~~~~~~~aa~~~al~~~--~---~~~~~~~~~~~~~~~~~l~~  294 (405)
T 2vi8_A          230 GPRG---GMILC---QEQFAKQIDKAIF----PGIQGGPLMHVIAAKAVAFGEA--L---QDDFKAYAKRVVDNAKRLAS  294 (405)
T ss_dssp             CCSC---EEEEE---CHHHHHHHHHHHT----TTTCSSCCHHHHHHHHHHHHHH--H---SHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCC---eEEEE---cHHHHHHHHhhhc----ccccCCCCHHHHHHHHHHHHHH--H---hhhHHHHHHHHHHHHHHHHH
Confidence             666   99866   6775554433221    22223322333333 2333210  0   12467888999999999999


Q ss_pred             HHhhccCCCCCcccccC-CcceeeecCC-----CHHHHHHHHhcccEEEcCC------------C--cEEEcc-----CC
Q 012647          386 SLSAKDKSGKDWSFILR-QIGMFSFTGL-----NKAQSDNMTNKWHVYMTKD------------G--RISLAG-----LS  440 (459)
Q Consensus       386 ~L~~~~g~~~~~~~~~~-~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~g------------g--Ris~~~-----~~  440 (459)
                      .|+ ++|    +++..+ .+++++|+.+     +.+.+...+.++||.+.+|            +  |||++.     .+
T Consensus       295 ~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~  369 (405)
T 2vi8_A          295 ALQ-NEG----FTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFG  369 (405)
T ss_dssp             HHH-HTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCC
T ss_pred             HHH-hCC----CeEecCCCCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCC
Confidence            999 776    566654 3567777643     4444444445579998863            2  999884     57


Q ss_pred             hhhHHHHHHHHHHHHhhc
Q 012647          441 LAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       441 ~e~i~~~~~~l~~~~~~~  458 (459)
                      ++++++++++|+++++++
T Consensus       370 ~~~i~~~~~~l~~~~~~~  387 (405)
T 2vi8_A          370 LEEMDEIAAIIGLVLKNV  387 (405)
T ss_dssp             HHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            999999999999998764

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.93  E-value=1.5e-24  Score=219.37  Aligned_cols=285  Identities=13%  Similarity=0.015  Sum_probs=188.2

Q ss_pred             HHHHHHHHHHhcCCCCccccCceEEeecccchh-HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeec
Q 012647          130 AFNKVTAELLFGADNSVLKEQRVATVQGLSGTG-SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD  208 (459)
Q Consensus       130 ~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~-a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~  208 (459)
                      ++|+.+++++    |.+  ++ +++  |+|||+ ++.++...+..+.+|+.|+++++.|..+...++..|++++.++..+
T Consensus       137 ~~~~~la~~~----g~~--~~-~~~--t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~  207 (456)
T 2z67_A          137 KILESFFKQL----GLN--VH-AIA--TPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVL  207 (456)
T ss_dssp             HHHHHHHHHT----TCC--CE-EEE--ESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEE
T ss_pred             HHHHHHHHHc----CCC--CC-EEE--eCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEec
Confidence            3555556554    332  33 778  999995 4443422222222678899999999999999999999999988642


Q ss_pred             -CCCCCCCHHHHHHHH-HcC-CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhH
Q 012647          209 -PKTVGLDFEGMIADI-KAA-PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASS  285 (459)
Q Consensus       209 -~~~~~~d~e~l~~~i-~~~-~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~  285 (459)
                       ++++.+|++++++++ ++. ..+++++++++||||||.+   +++++|+++|+++|+++++|+||..+..+     ...
T Consensus       208 ~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i---~~l~~I~~la~~~g~~v~vD~A~~~~~~g-----~~~  279 (456)
T 2z67_A          208 DGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNS---DDIVEIAKICENYDIPHIINGAYAIQNNY-----YLE  279 (456)
T ss_dssp             ETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCC---CCHHHHHHHHHHHTCCEEEECTTTTTCHH-----HHH
T ss_pred             cCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCc---CCHHHHHHHHHHcCCcEEEECcchHHHHH-----hhH
Confidence             346789999999999 420 1267778789999999999   78889999999999999999998876531     101


Q ss_pred             H-HHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHH
Q 012647          286 V-RLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDE  364 (459)
Q Consensus       286 ~-~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~  364 (459)
                      . ...... ..++++.|++|.++ .++++||++  +++++.++.+    .....+.....+.+++.++...+.       
T Consensus       280 ~~~~~~~~-~~D~~~~s~hK~~~-~p~g~G~l~--~~~~~~~~~l----~~~~~g~~~~~~~~~~~aal~~l~-------  344 (456)
T 2z67_A          280 KLKKAFKY-RVDAVVSSSDKNLL-TPIGGGLVY--STDAEFIKEI----SLSYPGRASATPVVNTLVSLLSMG-------  344 (456)
T ss_dssp             HHHHHHTS-CCSEEEEEHHHHHC-CCSSCEEEE--ESCHHHHHHH----HTTSCSCBCSHHHHHHHHHHHHHH-------
T ss_pred             HHHHhhCC-CCCEEEEcCCCCcC-CCCCeEEEE--EcCHHHHhhc----CcCCCCCCCCCHHHHHHHHHHHHH-------
Confidence            1 111111 34567899999755 568899994  4556644333    322111111223444444443332       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcc----CCCCCcccccCCcceeeecCC--C---HHHHHHHHhcccE---EEc---
Q 012647          365 WKAEMEMMAGRIKNVRQKLFDSLSAKD----KSGKDWSFILRQIGMFSFTGL--N---KAQSDNMTNKWHV---YMT---  429 (459)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~l~~~L~~~~----g~~~~~~~~~~~~g~f~~~~l--~---~~~~~~ll~~~gI---~v~---  429 (459)
                       .+.++++.+++.++++++.+.|+ ++    |    +.+..++ +++.| .+  +   .++.++|.++ ||   .+.   
T Consensus       345 -~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~g----~~v~~~~-~~v~~-~~~~~~~~~~l~~~L~~~-gi~~~rv~~~~  415 (456)
T 2z67_A          345 -SKNYLELVKNQKNSKKLLDELLN-DLSKKTG----GKFLDVE-SPIAS-CISVNSDPVEIAAKLYNL-RVTGPRGIKKT  415 (456)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHH-HHHHHSS----CCBCCCC-CSSEE-EEECSSCHHHHHHHHHHT-TEESCEEECTT
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHH-hcccccC----CEecCCC-CeEEE-EEecccHHHHHHHHHHHc-CCCcceEEeec
Confidence             23467888999999999999998 76    5    3555565 44332 22  2   3556666664 65   343   


Q ss_pred             -----------CCC--cEEEcc-CChhhHHHHHHHHHHHH
Q 012647          430 -----------KDG--RISLAG-LSLAKCEYLADAIIDSY  455 (459)
Q Consensus       430 -----------~gg--Ris~~~-~~~e~i~~~~~~l~~~~  455 (459)
                                 +.+  |+|++. .+++++++++++|++++
T Consensus       416 g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~  455 (456)
T 2z67_A          416 DHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL  455 (456)
T ss_dssp             CHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred             CccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence                       223  888773 38999999999998765

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.93  E-value=3.8e-24  Score=213.32  Aligned_cols=214  Identities=9%  Similarity=0.011  Sum_probs=151.9

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhh----CCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND----ARV  199 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~----~G~  199 (459)
                      +.....+|++.++++..        .+++++  ++||++++.++  +...+.+||+|++++|+|..+...++.    .|+
T Consensus        79 ~~p~~~~l~~~la~~~g--------~~~~~~--~~sG~~Ai~~a--l~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~  146 (414)
T 3ndn_A           79 GNPTVSVFEERLRLIEG--------APAAFA--TASGMAAVFTS--LGALLGAGDRLVAARSLFGSCFVVCSEILPRWGV  146 (414)
T ss_dssp             CCHHHHHHHHHHHHHHT--------CSEEEE--ESSHHHHHHHH--HHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTC
T ss_pred             CChHHHHHHHHHHHHHC--------CCcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCc
Confidence            34456778888888753        245777  89999999987  444467999999999999988776654    899


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~  279 (459)
                      +++.+|.+       |++++++++++   +++++++++|+||||.+   .++++|+++|++||+++|+|++|....... 
T Consensus       147 ~~~~v~~~-------d~~~l~~ai~~---~t~~v~le~p~NptG~~---~~l~~i~~la~~~g~~livDe~~~~~~~~~-  212 (414)
T 3ndn_A          147 QTVFVDGD-------DLSQWERALSV---PTQAVFFETPSNPMQSL---VDIAAVTELAHAAGAKVVLDNVFATPLLQQ-  212 (414)
T ss_dssp             EEEEECTT-------CHHHHHHHTSS---CCSEEEEESSCTTTCCC---CCHHHHHHHHHHTTCEEEEECTTTHHHHCC-
T ss_pred             EEEEeCCC-------CHHHHHHhcCC---CCeEEEEECCCCCCCcc---ccHHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence            99998862       89999999976   67788889999999999   457889999999999999999987332110 


Q ss_pred             CCChhHHHHHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHH-HHHHHHHhhccccccCCchHHHHHHHHHhC
Q 012647          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAA-RVKSQLKRLARPMYSNPPVHGARIVANVVG  357 (459)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  357 (459)
                           .    . ..+.++++.|+||.++.+| +|+|++++   +++.+. .+......    .....+...+.++...++
T Consensus       213 -----~----~-~~g~div~~S~sK~l~~~G~~~~G~vv~---~~~~~~~~l~~~~~~----~g~~~~~~~a~~~~~~l~  275 (414)
T 3ndn_A          213 -----G----F-PLGVDVVVYSGTKHIDGQGRVLGGAILG---DREYIDGPVQKLMRH----TGPAMSAFNAWVLLKGLE  275 (414)
T ss_dssp             -----C----G-GGTCSEEEEETTTTTTCSSCCCCEEEEE---CHHHHTTHHHHHHHH----HCCCCCHHHHHHHHHHGG
T ss_pred             -----c----h-hcCCCeEeccCCccccCCCCceEEEEEE---CHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHH
Confidence                 0    1 1234688999999999888 89999865   666443 33322221    122334433333332222


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          358 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                                .+....++..++++.+.+.|+ +.
T Consensus       276 ----------~l~~r~~~~~~~a~~l~~~L~-~~  298 (414)
T 3ndn_A          276 ----------TLAIRVQHSNASAQRIAEFLN-GH  298 (414)
T ss_dssp             ----------GHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHh-cC
Confidence                      134455666777788888887 65

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.93  E-value=1.5e-24  Score=218.95  Aligned_cols=322  Identities=16%  Similarity=0.130  Sum_probs=203.2

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCC---cccHHHH-------HHHHHHHhcCCCCccccCceE
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI---EGLAAFN-------KVTAELLFGADNSVLKEQRVA  153 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~---~g~~~lr-------~aia~~l~~~~~~~~~~~~i~  153 (459)
                      +.|+|..+..      + ++|.|.+++.+.+.+.....|+..   .|.+.++       +.+++++...      . ..+
T Consensus        46 ~~i~l~~~~~------~-~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~------~-~~v  111 (447)
T 3h7f_A           46 DTLEMIASEN------F-VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAE------F-ANV  111 (447)
T ss_dssp             HSEECCTTCC------C-CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS------E-EEC
T ss_pred             CceeEecCCC------C-CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCC------c-eEE
Confidence            5688865432      2 389999999887753322334321   2333332       5555554221      2 233


Q ss_pred             EeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HhhhC--CCCeeeeeeecCCCCCCCHHHHHHHHHcCCC
Q 012647          154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDA--RVPWSEYRYYDPKTVGLDFEGMIADIKAAPG  228 (459)
Q Consensus       154 ~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~--G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~  228 (459)
                      +  +++|++++..+  +...+.+||+|++++|+|..+..   .+...  +.++++++++ ++++.+|+++++++++..  
T Consensus       112 ~--~~sGs~a~~~a--~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~d~~~l~~~i~~~--  184 (447)
T 3h7f_A          112 Q--PHSGAQANAAV--LHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVD-PATHLIDMDAVRATALEF--  184 (447)
T ss_dssp             C--CSSHHHHHHHH--HHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCC-TTTCSCCHHHHHHHHHHH--
T ss_pred             E--eCCHHHHHHHH--HHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcC-cccCCcCHHHHHHHHHhc--
Confidence            2  57788899887  44457799999999999877321   11222  3345556653 346789999999999642  


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc
Q 012647          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (459)
Q Consensus       229 ~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (459)
                      +++++++++|+||++.     ++++|.++|++||+++|+||+|. ++.+.+....  .    ..  ...+++.|+||.++
T Consensus       185 ~~~~i~~~~~~~~~~~-----~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~--~----~~--~~di~~~s~sK~l~  251 (447)
T 3h7f_A          185 RPKVIIAGWSAYPRVL-----DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPS--P----VP--HADVVSTTVHKTLG  251 (447)
T ss_dssp             CCSEEEEECSSCCSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC--S----TT--TCSEEEEESSGGGC
T ss_pred             CCeEEEEcCCCCCCcc-----CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCC--C----CC--CCcEEEecCCcCCC
Confidence            4567777899999986     68899999999999999999963 3322211000  0    01  22477999999874


Q ss_pred             cCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          308 LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSL  387 (459)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  387 (459)
                        |+|.||+++   +++..+.+......   ...++++...+.++...+..  ..   .+.+++..+++.++++++.+.|
T Consensus       252 --G~~gG~i~~---~~~~~~~l~~~~~~---~~~~~~~~~~~~a~~~a~~~--~~---~~~~~~~~~~~~~~~~~l~~~L  318 (447)
T 3h7f_A          252 --GGRSGLIVG---KQQYAKAINSAVFP---GQQGGPLMHVIAGKAVALKI--AA---TPEFADRQRRTLSGARIIADRL  318 (447)
T ss_dssp             --CCSCEEEEE---CGGGHHHHHHHHTT---TTCSSCCHHHHHHHHHHHHH--TT---SHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCeEEEEE---CHHHHHHHhhhcCC---cccCCccHHHHHHHHHHHHH--hh---CHHHHHHHHHHHHHHHHHHHHH
Confidence              899999866   77755555433221   22223333322222222211  00   1234677888889999999999


Q ss_pred             hhcc-----CCCCCccccc-CCcceeeecC-----CCHHHHHHHHhcccEEEc----CC---------C-cEEEcc----
Q 012647          388 SAKD-----KSGKDWSFIL-RQIGMFSFTG-----LNKAQSDNMTNKWHVYMT----KD---------G-RISLAG----  438 (459)
Q Consensus       388 ~~~~-----g~~~~~~~~~-~~~g~f~~~~-----l~~~~~~~ll~~~gI~v~----~g---------g-Ris~~~----  438 (459)
                      + +.     |    +++.. +.+++++|+.     ++.+.+..+++++||.+.    |+         + ||+...    
T Consensus       319 ~-~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~  393 (447)
T 3h7f_A          319 M-APDVAKAG----VSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATR  393 (447)
T ss_dssp             T-SHHHHHTT----CEEGGGSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHH
T ss_pred             H-hccccCCC----eEEecCCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhC
Confidence            8 76     6    45443 2345565553     366778888887899988    43         1 887542    


Q ss_pred             -CChhhHHHHHHHHHHHHhh
Q 012647          439 -LSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       439 -~~~e~i~~~~~~l~~~~~~  457 (459)
                       .+++++++++++|.+++++
T Consensus       394 ~~~~eei~~~~~~l~~~l~~  413 (447)
T 3h7f_A          394 GFGDTEFTEVADIIATALAT  413 (447)
T ss_dssp             TCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHHHhc
Confidence             4789999999999998864

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.92  E-value=3.1e-24  Score=214.60  Aligned_cols=312  Identities=15%  Similarity=0.163  Sum_probs=187.7

Q ss_pred             CcHHHHHHHHHHhhcCCCCCCC------CCcccHHHH----HHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHH
Q 012647          102 VLDVVKKAENLMLERGENKEYL------PIEGLAAFN----KVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALI  171 (459)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~------~~~g~~~lr----~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~  171 (459)
                      .+|.|.+++.+.+.......|+      .....+.+.    +.+++++..      ++++|++  ++| ++++.++  +.
T Consensus        42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~------~~~~v~~--~sG-s~a~~~a--~~  110 (420)
T 3gbx_A           42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGA------DYANVQP--HSG-SQANFAV--YT  110 (420)
T ss_dssp             CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTC------SEEECCC--SSH-HHHHHHH--HH
T ss_pred             CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCC------CCceeEe--cCc-HHHHHHH--HH
Confidence            3889999998877432212221      222223333    455555432      2566655  555 8898887  44


Q ss_pred             HHhCCCCEEEEcCCCCcchH---HHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCH
Q 012647          172 ERYFPGAKVLISSPTWGNHK---NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTP  248 (459)
Q Consensus       172 ~~~~~gd~Vlv~~p~y~~~~---~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~  248 (459)
                      ..+.+||+|+++.|+|..+.   ..+...|..+..+++..++++.+|++++++++++.  +++++++++|+||+  .   
T Consensus       111 ~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~~~~--~---  183 (420)
T 3gbx_A          111 ALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEH--KPKMIIGGFSAYSG--V---  183 (420)
T ss_dssp             HHCCTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHH--CCSEEEECCTTCCS--C---
T ss_pred             HhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhc--CCeEEEEecCccCC--c---
Confidence            44779999999999997743   22233344444333322456789999999999862  46677888899974  4   


Q ss_pred             HHHHHHHHHHHhcCCeeEEeccCCC-CCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCCh---h
Q 012647          249 EQWEKIADVIQEKNHIPFFDVAYQG-FASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS---D  324 (459)
Q Consensus       249 ~~l~~i~~l~~~~~~~ii~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~---~  324 (459)
                      .++++|.++|++||+++|+||+|.. +...+.   ...   ...  ..++++.|+||.++  |.|.||+++   ++   +
T Consensus       184 ~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~---~~~---~~~--~~di~~~s~sK~~~--g~~gg~~~~---~~~~~~  250 (420)
T 3gbx_A          184 VDWAKMREIADSIGAYLFVDMAHVAGLIAAGV---YPN---PVP--HAHVVTTTTHKTLA--GPRGGLILA---KGGDEE  250 (420)
T ss_dssp             CCHHHHHHHHHHTTCEEEEECTTTHHHHHTTS---SCC---STT--TSSEEEEESSGGGC--SCSCEEEEE---SSCCHH
T ss_pred             cCHHHHHHHHHHcCCEEEEECCcchhceeccc---CCc---ccc--cCCEEEeecccCCC--CCCceEEEE---cCCcHH
Confidence            3488999999999999999999642 221110   000   011  24588999999985  555688855   54   5


Q ss_pred             HHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC-C
Q 012647          325 LAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR-Q  403 (459)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~-~  403 (459)
                      ..+.+....   ..+...+++...+.++...+..  ..   .+++++.+++++++++++.+.|+ +.|    +++..+ .
T Consensus       251 ~~~~~~~~~---~~~~~~~~~~~~~~a~~~a~~~--~~---~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~  317 (420)
T 3gbx_A          251 LYKKLNSAV---FPSAQGGPLMHVIAGKAVALKE--AM---EPEFKVYQQQVAKNAKAMVEVFL-NRG----YKVVSGGT  317 (420)
T ss_dssp             HHHHHHHHH---C----CCCCHHHHHHHHHHHHH--TT---SHHHHHHHHHHHHHHHHHHHHHH-HTT----CEEGGGSC
T ss_pred             HHHHhhhhc---CCCCCCCcchhHHHHHHHHHHH--HH---hHhHHHHHHHHHHHHHHHHHHHH-hcC----CeeccCCC
Confidence            333332221   1111223444333333222211  00   13357788899999999999999 776    455543 3


Q ss_pred             cceeeecC-----CCHHHHHHHHhcccEEEcC-------C------C-cEEEcc-----CChhhHHHHHHHHHHHHhh
Q 012647          404 IGMFSFTG-----LNKAQSDNMTNKWHVYMTK-------D------G-RISLAG-----LSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       404 ~g~f~~~~-----l~~~~~~~ll~~~gI~v~~-------g------g-Ris~~~-----~~~e~i~~~~~~l~~~~~~  457 (459)
                      .++++|+.     .+.+.+..+++++||.+.+       +      + ||++..     .+++++++++++|++++++
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~  395 (420)
T 3gbx_A          318 ENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN  395 (420)
T ss_dssp             SSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence            45555543     3566677667778999987       2      1 888753     3579999999999998865

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.92  E-value=5.7e-23  Score=206.06  Aligned_cols=214  Identities=11%  Similarity=0.088  Sum_probs=150.9

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----hhhCCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARV  199 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~G~  199 (459)
                      +.....++++.+++++..       ++.|++   .+|+++++++  +...+.+||+|+++.|.|..+...    ++..|+
T Consensus       112 ~~~~~~~l~~~lA~l~g~-------~~~v~~---~sG~~Ai~~a--l~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~  179 (445)
T 1qgn_A          112 GNPTTVVLEEKISALEGA-------ESTLLM---ASGMCASTVM--LLALVPAGGHIVTTTDCYRKTRIFIETILPKMGI  179 (445)
T ss_dssp             CCHHHHHHHHHHHHHHTC-------SEEEEE---SCHHHHHHHH--HHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTC
T ss_pred             CChHHHHHHHHHHHHhCC-------CcEEEe---CCHHHHHHHH--HHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCC
Confidence            345567999999999743       244555   5556999998  444477999999999999876663    567899


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCc-EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGS-FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGS  278 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~-~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~  278 (459)
                      +++.+|.+       |++++++++++   ++ +++++++|+||||.+.   ++++|+++|++||+++|+|++|.......
T Consensus       180 ~v~~v~~~-------d~~~l~~ai~~---~tv~lV~le~p~NptG~v~---dl~~I~~la~~~g~~livD~a~~~~~~~~  246 (445)
T 1qgn_A          180 TATVIDPA-------DVGALELALNQ---KKVNLFFTESPTNPFLRCV---DIELVSKLCHEKGALVCIDGTFATPLNQK  246 (445)
T ss_dssp             EEEEECSS-------CHHHHHHHHHH---SCEEEEEEESSCTTTCCCC---CHHHHHHHHHHTTCEEEEECTTTCTTTCC
T ss_pred             EEEEeCCC-------CHHHHHHHhcc---CCCCEEEEeCCCCCCCccc---CHHHHHHHHHHcCCEEEEECCCcccccCC
Confidence            99988762       89999999987   67 8899999999999995   47789999999999999999987543211


Q ss_pred             CCCChhHHHHHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhC
Q 012647          279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVG  357 (459)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  357 (459)
                          .  .     ..+.++++.|+||.+|.+| .++||+++   ++++++.+......    .....+...+.++...++
T Consensus       247 ----~--~-----~~g~Div~~S~sK~~gg~gd~~~G~l~~---~~~l~~~l~~~~~~----~g~~~~~~~a~~~~~~l~  308 (445)
T 1qgn_A          247 ----A--L-----ALGADLVLHSATKFLGGHNDVLAGCISG---PLKLVSEIRNLHHI----LGGALNPNAAYLIIRGMK  308 (445)
T ss_dssp             ----T--T-----TTTCSEEEECTTTTTTCSSSCCCEEEEE---CHHHHHHHHHHHHH----HCCCCCHHHHHHHHHHGG
T ss_pred             ----c--c-----ccCCEEEEECCcccccccccceEEEEEE---CHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhHH
Confidence                1  0     1235688999999999666 47999876   77766555433221    111233333333333332


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          358 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                                .+....+++.++++.+.+.|+ +.
T Consensus       309 ----------~l~~r~~~~~~~a~~l~~~L~-~~  331 (445)
T 1qgn_A          309 ----------TLHLRVQQQNSTALRMAEILE-AH  331 (445)
T ss_dssp             ----------GHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHh-cC
Confidence                      123444555666788888887 65

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.92  E-value=1.2e-23  Score=208.75  Aligned_cols=215  Identities=14%  Similarity=0.078  Sum_probs=157.3

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh----hhCCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARV  199 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~G~  199 (459)
                      +.....++++.+++++..        +++++  ++||++|++++.  ...+.+||+|+++.|+|..+...+    +..|+
T Consensus        64 ~~~~~~~l~~~la~~~g~--------~~~~~--~~sGt~A~~~al--~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~  131 (392)
T 3qhx_A           64 GNPTRTALEAALAAVEDA--------AFGRA--FSSGMAAADCAL--RAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNV  131 (392)
T ss_dssp             CCHHHHHHHHHHHHHTTC--------SEEEE--ESSHHHHHHHHH--HHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTC
T ss_pred             CChHHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHHH--HHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCc
Confidence            556678999999999643        35777  899999999984  444779999999999998776655    67899


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~  279 (459)
                      +++.+|.+       |++.+++++++   +++++++++|+||||.+   .++++|+++|++||+++|+|++|......  
T Consensus       132 ~~~~v~~~-------d~~~l~~~i~~---~~~~v~~~~~~nptG~~---~~l~~i~~la~~~g~~li~D~~~~~~~~~--  196 (392)
T 3qhx_A          132 EYTPVALA-------DLDAVRAAIRP---TTRLIWVETPTNPLLSI---ADIAGIAQLGADSSAKVLVDNTFASPALQ--  196 (392)
T ss_dssp             EEEEECTT-------CHHHHHHHCCT---TEEEEEEESSCTTTCCC---CCHHHHHHHHHHHTCEEEEECTTTCTTTC--
T ss_pred             EEEEeCCC-------CHHHHHHhhCC---CCeEEEEECCCCCCcEE---ecHHHHHHHHHHcCCEEEEECCCcccccC--
Confidence            99888762       89999999875   78899999999999999   45889999999999999999998755322  


Q ss_pred             CCChhHHHHHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCC
Q 012647          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN  358 (459)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  358 (459)
                        ...       ....++++.|+||.++.+| .|.||+++  ++++..+.+....    .......+...+.++...++.
T Consensus       197 --~~~-------~~~~di~~~S~sK~lg~~g~~~~G~v~~--~~~~~~~~l~~~~----~~~g~~~~~~~~~~~~~~l~~  261 (392)
T 3qhx_A          197 --QPL-------SLGADVVLHSTTKYIGGHSDVVGGALVT--NDEELDQSFAFLQ----NGAGAVPGPFDAYLTMRGLKT  261 (392)
T ss_dssp             --CGG-------GGTCSEEEEETTTTTTCSSCCCCEEEEE--SCHHHHHHHHHHH----HHHCCCCCHHHHHHHHHHHTT
T ss_pred             --ChH-------HhCCcEEEEcCccccCCCCCceEEEEEE--CcHHHHHHHHHHH----HhcCCCCCHHHHHHHHhhhhH
Confidence              111       1235688999999999888 78999844  4466554443322    222334555565665555543


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                                +....++..++.+.+.+.|+ +.
T Consensus       262 ----------l~~~~~~~~~~~~~l~~~L~-~~  283 (392)
T 3qhx_A          262 ----------LVLRMQRHSENAAAVAEFLA-EH  283 (392)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHH-TC
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHh-cC
Confidence                      23344555666677777777 54

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.92  E-value=3.7e-23  Score=206.54  Aligned_cols=176  Identities=14%  Similarity=0.086  Sum_probs=136.6

Q ss_pred             cHHHHHHHHHHhhcCCCCCCCCC--cccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEE
Q 012647          103 LDVVKKAENLMLERGENKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV  180 (459)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~--~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~V  180 (459)
                      ++.+.+++.   ... .+.|+..  ....++++.+++++..        +++++  ++||+++++++.  ...+.+||+|
T Consensus        35 ~~~~~~~~~---~~~-~~~y~~~~~~~~~~l~~~la~~~g~--------~~~~~--~~~gt~a~~~al--~~l~~~gd~v   98 (412)
T 2cb1_A           35 LEEGQERFA---TGE-GYVYARQKDPTAKALEERLKALEGA--------LEAVV--LASGQAATFAAL--LALLRPGDEV   98 (412)
T ss_dssp             HHHHHHHHH---HCC-SCSBTTTCCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHHH--HTTCCTTCEE
T ss_pred             hHHHHHHhc---ccc-CcCcCCCCChHHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHHH--HHHhCCCCEE
Confidence            455555543   222 3567643  6788999999999743        36888  999999999983  3336799999


Q ss_pred             EEcCCCCcchHHH----hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 012647          181 LISSPTWGNHKNI----FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD  256 (459)
Q Consensus       181 lv~~p~y~~~~~~----~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~  256 (459)
                      +++.|+|..+...    ++..|++++.+|.        |++++++++++   +++++++++|+||||.++   ++++|++
T Consensus        99 i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~l~~~i~~---~~~~v~~~~~~n~~G~~~---~l~~i~~  164 (412)
T 2cb1_A           99 VAAKGLFGQTIGLFGQVLSLMGVTVRYVDP--------EPEAVREALSA---KTRAVFVETVANPALLVP---DLEALAT  164 (412)
T ss_dssp             EEETTCCHHHHHHHHHTTTTTTCEEEEECS--------SHHHHHHHCCT---TEEEEEEESSCTTTCCCC---CHHHHHH
T ss_pred             EEeCCCchhHHHHHHHHHHHcCCEEEEECC--------CHHHHHHHhcc---CCeEEEEeCCCCCCcccc---cHHHHHH
Confidence            9999999865554    4567888888875        38899998875   788999999999999996   5889999


Q ss_pred             HHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012647          257 VIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (459)
Q Consensus       257 l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (459)
                      +|++||+++|+|++|..+.+..   .  ..     ..+.++++.|+||.++.+|+|+|++++
T Consensus       165 l~~~~~~~li~D~~~~~~~~~~---~--~~-----~~~~di~~~S~~K~~~~~~~~~G~~~~  216 (412)
T 2cb1_A          165 LAEEAGVALVVDNTFGAAGALC---R--PL-----AWGAHVVVESLTKWASGHGSVLGGAVL  216 (412)
T ss_dssp             HHHHHTCEEEEECGGGTTTTSC---C--GG-----GGTCSEEEEETTTTTTCSSCCCCEEEE
T ss_pred             HHHHcCCEEEEECCCccccccC---C--cc-----ccCCeEEEECCcccccCCCCcEEEEEE
Confidence            9999999999999988763211   1  11     124678999999999989999999965

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.92  E-value=1.2e-23  Score=215.36  Aligned_cols=360  Identities=11%  Similarity=0.029  Sum_probs=229.6

Q ss_pred             cchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCcccc
Q 012647           70 ILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE  149 (459)
Q Consensus        70 i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~  149 (459)
                      ..++.+.+...--+..+++....|++....++.++.+.+++.....+.....|....+..++.+.+.+++....|.+ ..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~-~~  158 (497)
T 2qma_A           80 LKSVIDDVAELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLS-EK  158 (497)
T ss_dssp             HHHHHHHHHHHTTTTSCCTTSTTBCSSSCCCCBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCC-TT
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCCeeEeCCCCCcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCC-CC
Confidence            33444444332234566777778888777777788888887655433223456554566666666555554444442 13


Q ss_pred             CceEEeecccchhHHHHHHHHHHH--h---------CC------CC-EEEEcCCCCcchHHHhhhCCC---Ceeeeeeec
Q 012647          150 QRVATVQGLSGTGSLRLAAALIER--Y---------FP------GA-KVLISSPTWGNHKNIFNDARV---PWSEYRYYD  208 (459)
Q Consensus       150 ~~i~~~~t~ggt~a~~l~~~~~~~--~---------~~------gd-~Vlv~~p~y~~~~~~~~~~G~---~v~~v~~~~  208 (459)
                      +++++  |+|||+++.++....+.  +         .+      |+ .|+++.++|..+...++..|.   +++.+|++ 
T Consensus       159 ~~~~~--t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~-  235 (497)
T 2qma_A          159 ADGIF--TSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDAN-  235 (497)
T ss_dssp             CEEEE--ESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC-
T ss_pred             CCeEE--cCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecC-
Confidence            67888  99999999998554321  2         12      46 899999999999888888876   78999983 


Q ss_pred             CCCCCCCHHHHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhH
Q 012647          209 PKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASS  285 (459)
Q Consensus       209 ~~~~~~d~e~l~~~i~~~---~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~  285 (459)
                       +++.+|+++|++++++.   ..++.++++++++||||.+   +++++|+++|++||+++++|++|..+....   +   
T Consensus       236 -~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~---~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~---~---  305 (497)
T 2qma_A          236 -ADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAI---DDLDFIADMAVKHDMWMHVDGAYGGALILS---S---  305 (497)
T ss_dssp             -TTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCB---CCHHHHHHHHHHHTCEEEEEETTGGGGGGS---T---
T ss_pred             -CCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCC---CCHHHHHHHHHHcCCEEEEehhhhHHHHhC---c---
Confidence             46889999999999752   1123477788999999998   889999999999999999999998776421   1   


Q ss_pred             HHHHHhc-CCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccc--cC-----------CchHHHHH
Q 012647          286 VRLFATR-GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMY--SN-----------PPVHGARI  351 (459)
Q Consensus       286 ~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~~~~~~  351 (459)
                      .+..... ...++++.|++|.++.| +++|+++  ++++..++.+............  .+           ...+.+.+
T Consensus       306 ~~~~~~gi~~~D~i~~s~hK~l~~p-~~~G~l~--~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~  382 (497)
T 2qma_A          306 HKSRLKGVERAHSISVDFHKLFYQT-ISCGALL--VNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFM  382 (497)
T ss_dssp             TGGGGTTGGGCSEEEEETTTTTCCC-SSCEEEE--ESCGGGGGGGCC--------------------CCSCCCTHHHHHH
T ss_pred             chHhhcCcccCCEEEEcchhccCCC-cceEEEE--EeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHH
Confidence            1111111 12347788999988855 6899995  4555422222100000000000  00           01222233


Q ss_pred             HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc-cCCcceeeec--CC--C-----HHHHHHHH
Q 012647          352 VANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI-LRQIGMFSFT--GL--N-----KAQSDNMT  421 (459)
Q Consensus       352 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~-~~~~g~f~~~--~l--~-----~~~~~~ll  421 (459)
                      +...+.        .+.++++.++..++++++.+.|+ +++   +++++ .++.+++.|.  +.  .     .++.+.+.
T Consensus       383 ~l~~lg--------~~g~~~~~~~~~~~a~~l~~~L~-~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~l~~~l~  450 (497)
T 2qma_A          383 TMQNVG--------PKALGDMYDHLLAQTLEVADMIR-TND---QFELLAEPSLSTVLFRATHETADLDELNKALRLEAL  450 (497)
T ss_dssp             HHHHTC--------HHHHHHHHHHHHHHHHHHHHHHH-TCT---TEEECSCCSSSEEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred             HHHHhC--------HHHHHHHHHHHHHHHHHHHHHHh-hCC---CeEEEcCCCceEEEEEEcCCccCHHHHHHHHHHHHH
Confidence            333332        13356778888899999999999 762   15653 4566655543  21  1     23345555


Q ss_pred             hcccEEEcCC----C----cEEEc--cCChhhHHHHHHHHHHHHhhcC
Q 012647          422 NKWHVYMTKD----G----RISLA--GLSLAKCEYLADAIIDSYHNVS  459 (459)
Q Consensus       422 ~~~gI~v~~g----g----Ris~~--~~~~e~i~~~~~~l~~~~~~~~  459 (459)
                      + .|+.+.++    |    ||++.  ..+++++++++++|++++++++
T Consensus       451 ~-~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~~  497 (497)
T 2qma_A          451 T-RGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLSKINMLAVELV  497 (497)
T ss_dssp             H-HTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred             h-CCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhhC
Confidence            5 48877642    3    99984  2388999999999999988764

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.92  E-value=7.4e-24  Score=210.17  Aligned_cols=213  Identities=15%  Similarity=0.102  Sum_probs=150.5

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HhhhCCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARV  199 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~G~  199 (459)
                      +..+..++|+++|+++..       ++ .++  +.+|+++++++.  . .+.+||+|+++.|+|.....    .++..|+
T Consensus        53 ~~~~~~~lr~~la~~~g~-------~~-~i~--~~sGt~a~~~al--~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~  119 (393)
T 1n8p_A           53 QNPNRENLERAVAALENA-------QY-GLA--FSSGSATTATIL--Q-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGV  119 (393)
T ss_dssp             CCHHHHHHHHHHHHHTTC-------SE-EEE--ESCHHHHHHHHH--H-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCS
T ss_pred             CChhHHHHHHHHHHHhCC-------Cc-EEE--ECChHHHHHHHH--H-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCc
Confidence            456788999999999643       23 444  456699999984  3 46799999999999984433    4567899


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc----CCeeEEeccCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK----NHIPFFDVAYQGFA  275 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~----~~~ii~Deay~~~~  275 (459)
                      +++.+|++       | +++++++++   +++++++++||||||.+++   +++|+++|++|    |+++|+|++|..+.
T Consensus       120 ~v~~v~~~-------d-~~l~~~i~~---~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~  185 (393)
T 1n8p_A          120 ETSFTNDL-------L-NDLPQLIKE---NTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPY  185 (393)
T ss_dssp             CCEEESSH-------H-HHHHHHSCS---SEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHH
T ss_pred             EEEEeCCC-------h-HHHHHhccc---CceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCccccc
Confidence            99998873       6 888888875   7889999999999999964   78899999999    99999999988765


Q ss_pred             CCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc-ceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHH
Q 012647          276 SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVAN  354 (459)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (459)
                      ..    +..       ..+.++++.|+||.+|++|+|+ ||++  +++++.++.+......    .....+...+.++..
T Consensus       186 ~~----~~~-------~~~~di~~~S~sK~~g~~G~rigG~~~--~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~  248 (393)
T 1n8p_A          186 IS----NPL-------NFGADIVVHSATKYINGHSDVVLGVLA--TNNKPLYERLQFLQNA----IGAIPSPFDAWLTHR  248 (393)
T ss_dssp             HC----CGG-------GGTCSEEEEETTTTTTCSSCCCCEEEE--ESCHHHHHHHHHHHHH----HCCCCCHHHHHHHHH
T ss_pred             cC----CHH-------HcCCeEEEEECcccccCCCCceeEEEE--eCCHHHHHHHHHHHHh----cCCCCCHHHHHHHHh
Confidence            42    111       1146799999999999999999 8873  4456755555443221    112334444444444


Q ss_pred             HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          355 VVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       355 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                      .++.          +....++..++++.+.+.|+ +.
T Consensus       249 ~l~~----------~~~~~~~~~~~~~~l~~~L~-~~  274 (393)
T 1n8p_A          249 GLKT----------LHLRVRQAALSANKIAEFLA-AD  274 (393)
T ss_dssp             HHTT----------HHHHHHHHHHHHHHHHHHHT-SC
T ss_pred             ccch----------HHHHHHHHHHHHHHHHHHHH-hC
Confidence            4432          23334445556666666776 54

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.92  E-value=9.3e-24  Score=215.96  Aligned_cols=323  Identities=12%  Similarity=0.063  Sum_probs=216.0

Q ss_pred             ccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCce-EEeecccchhHHHHHHHHHHHhCC--
Q 012647          100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRV-ATVQGLSGTGSLRLAAALIERYFP--  176 (459)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i-~~~~t~ggt~a~~l~~~~~~~~~~--  176 (459)
                      .++++.+.+++.+.+.... ..|....+..++++.+.+++....|.+.+++++ .-..|+||++++.++.  ++...+  
T Consensus        66 ~~~~~~v~~~l~~~~~~~~-~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~--~a~~~~~~  142 (502)
T 3hbx_A           66 TWMEPECDKLIMSSINKNY-VDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAG--LAFKRKWQ  142 (502)
T ss_dssp             CCCCHHHHHHHHHTTTCBT-TCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHH--HHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhccCC-CChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHH--HHHHHHHh
Confidence            3447899999998875532 344445556677777666666656655334333 2123789999999873  332322  


Q ss_pred             ------CC-----EEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCC
Q 012647          177 ------GA-----KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGID  245 (459)
Q Consensus       177 ------gd-----~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~  245 (459)
                            |+     +|+++.++|..+...++..|++++.+|++ ++++.+|++++++++++   +++++++++|+||||.+
T Consensus       143 ~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~-~~~~~~d~~~l~~~i~~---~t~~v~~~~~~n~tG~~  218 (502)
T 3hbx_A          143 NKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLS-EGYYVMDPQQAVDMVDE---NTICVAAILGSTLNGEF  218 (502)
T ss_dssp             HHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCB-TTBCSCCHHHHHHHCCT---TEEEEEEEBSCTTTCCB
T ss_pred             HHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecC-CCcCcCCHHHHHHHHhh---CCEEEEEecCCCCCCcc
Confidence                  66     99999999999999999999999999985 34589999999999986   78888889999999999


Q ss_pred             CCHHHHHHHHHHHHhc------CCeeEEeccCCCCC----CCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcce
Q 012647          246 PTPEQWEKIADVIQEK------NHIPFFDVAYQGFA----SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA  315 (459)
Q Consensus       246 ~s~~~l~~i~~l~~~~------~~~ii~Deay~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~  315 (459)
                         +++++|.++|+++      |+++++|++|.++.    .+...   +    ......-+++..|.+|.++ .+.++||
T Consensus       219 ---~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~---~----~~~~~~~D~v~~s~hK~l~-~p~g~G~  287 (502)
T 3hbx_A          219 ---EDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELE---W----DFRLPLVKSINVSGHKYGL-VYAGIGW  287 (502)
T ss_dssp             ---CCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC---C----STTSTTEEEEEEETTTTTC-CCSSCEE
T ss_pred             ---cCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccc---c----ccCCCCceEEEECcccccC-CCCCeEE
Confidence               7788899999998      99999999998654    21110   0    0112245677889999875 5677999


Q ss_pred             EEEEeCChhHHHHHHHHHHhhcccc----------ccCC--chHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012647          316 MNVVCSSSDLAARVKSQLKRLARPM----------YSNP--PVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKL  383 (459)
Q Consensus       316 ~~~v~~~~~~~~~~~~~~~~~~~~~----------~~~~--~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l  383 (459)
                      ++  +++++.+.   ..+.....+.          ++.+  ..+++.++...+.        .+.+.+..++..++++++
T Consensus       288 ~~--~~~~~~l~---~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg--------~~g~~~~~~~~~~~a~~l  354 (502)
T 3hbx_A          288 VI--WRNKEDLP---EELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG--------HEGYRNVMENCRENMIVL  354 (502)
T ss_dssp             EE--ESSGGGSC---GGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_pred             EE--EeCHHHhh---HHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence            84  45544211   1110000000          0011  2223333333222        234567788888899999


Q ss_pred             HHHHhhccCCCCCcccccC--Ccceeeec--C---CCH-HHHHHHHhcccEEEc----CC---C----cEEEccC-Chhh
Q 012647          384 FDSLSAKDKSGKDWSFILR--QIGMFSFT--G---LNK-AQSDNMTNKWHVYMT----KD---G----RISLAGL-SLAK  443 (459)
Q Consensus       384 ~~~L~~~~g~~~~~~~~~~--~~g~f~~~--~---l~~-~~~~~ll~~~gI~v~----~g---g----Ris~~~~-~~e~  443 (459)
                      .+.|+ +++   +++++.+  ..+++.|.  +   ++. ++.++|.+ +||.+.    |.   +    ||+++.. ++++
T Consensus       355 ~~~L~-~~~---~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~-~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~ed  429 (502)
T 3hbx_A          355 REGLE-KTE---RFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRR-YGWIVPAYTMPPNAQHITVLRVVIREDFSRTL  429 (502)
T ss_dssp             HHHHH-TTT---CEEECSCSSSSSEEEEEESSCSSCCHHHHHHHHHT-TTCBCCEEECCTTCTTCEEEEEECCTTCCHHH
T ss_pred             HHHHH-hCC---CEEEEeCCCCceEEEEEecCCCcCCHHHHHHHHHh-CCcEEeeccCCcccCCceEEEEEeCCCCCHHH
Confidence            99999 875   2565544  44544432  2   344 45556655 699753    21   2    9998754 7899


Q ss_pred             HHHHHHHHHHHHhhc
Q 012647          444 CEYLADAIIDSYHNV  458 (459)
Q Consensus       444 i~~~~~~l~~~~~~~  458 (459)
                      ++.+++.|+++++++
T Consensus       430 id~li~~L~~~l~~l  444 (502)
T 3hbx_A          430 AERLVIDIEKVMREL  444 (502)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988754

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.92  E-value=1.6e-23  Score=213.82  Aligned_cols=328  Identities=10%  Similarity=-0.005  Sum_probs=215.1

Q ss_pred             cHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccc-------cCceEEeecccchhHHHHHHHHHHHh-
Q 012647          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLK-------EQRVATVQGLSGTGSLRLAAALIERY-  174 (459)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~-------~~~i~~~~t~ggt~a~~l~~~~~~~~-  174 (459)
                      +..+.+.+...+..+ ...|....+..++++++++++....|.+.+       ..++++  |+|||+|+.++....... 
T Consensus        87 ~~~~~~~~~~~~n~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~--t~ggTeA~~~al~~~~~~~  163 (486)
T 1js3_A           87 PAMLADMLCGAIGCI-GFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVI--QGSASEATLVALLAARTKV  163 (486)
T ss_dssp             HHHHHHHHHHHHCCC-CSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEE--ESCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcC-ccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEE--cCCcHHHHHHHHHHHHHHH
Confidence            455777777777543 366777777888998988887766665432       245778  999999998874332211 


Q ss_pred             CC------CC--------E--EEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCC---CCcEEEEe
Q 012647          175 FP------GA--------K--VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP---GGSFILLH  235 (459)
Q Consensus       175 ~~------gd--------~--Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~---~~~~~ii~  235 (459)
                      .+      ||        +  |++++++|..+...++..|++++.+|+  ++++.+|+++|+++|++..   ....++++
T Consensus       164 ~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~--d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~  241 (486)
T 1js3_A          164 VRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPS--DGKFAMRASALQEALERDKAAGLIPFFVVA  241 (486)
T ss_dssp             HHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECC--CTTSCCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             hhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeec--CCCCCCCHHHHHHHHHHHHhCCCCceEEEE
Confidence            11      42        3  888999999999999999999999998  3578999999999997611   11247788


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcce
Q 012647          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA  315 (459)
Q Consensus       236 ~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~  315 (459)
                      ++|+||||.+   +++++|+++|++||+++++|++|..+.....  +....  +........++.|++|.++.| +++|+
T Consensus       242 ~~~~n~tG~~---~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~--~~~~~--~~g~~~adsi~~~~hK~~~~p-~~~G~  313 (486)
T 1js3_A          242 TLGTTSCCSF---DNLLEVGPICHEEDIWLHVDAAYAGSAFICP--EFRHL--LNGVEFADSFNFNPHKWLLVN-FDCSA  313 (486)
T ss_dssp             EBSCTTTCCB---CCHHHHHHHHHHTTCEEEEECTTGGGGGGST--TTGGG--GTTGGGCSEEEECHHHHSSCC-SSCEE
T ss_pred             eCCCCCCCCC---CCHHHHHHHHHHcCCEEEEehhhHHHHHHCH--HHHHH--hcCccccCeeEEchhhhcCCC-cceEE
Confidence            9999999998   8999999999999999999999987543210  11110  001111235567899999865 88999


Q ss_pred             EEEEeCChhH-HHHHH---HHHHhhcc----------c--ccc-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012647          316 MNVVCSSSDL-AARVK---SQLKRLAR----------P--MYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  378 (459)
Q Consensus       316 ~~~v~~~~~~-~~~~~---~~~~~~~~----------~--~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  378 (459)
                      ++  ++++.. .+.+.   ..+.....          .  ..+ ....+++.++...+.        .+.++++.+++.+
T Consensus       314 l~--~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g--------~~g~~~~~~~~~~  383 (486)
T 1js3_A          314 MW--VKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYG--------VKGLQAYIRKHVQ  383 (486)
T ss_dssp             EE--ESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred             EE--EeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHh--------HHHHHHHHHHHHH
Confidence            94  455542 12210   11110000          0  000 122334444433331        2346778888889


Q ss_pred             HHHHHHHHHhhccCCCCCcccc-cCCcceeeec--CC---CHHHHHHHHhcccEEE-cCC---C----cEEEccC--Chh
Q 012647          379 VRQKLFDSLSAKDKSGKDWSFI-LRQIGMFSFT--GL---NKAQSDNMTNKWHVYM-TKD---G----RISLAGL--SLA  442 (459)
Q Consensus       379 ~~~~l~~~L~~~~g~~~~~~~~-~~~~g~f~~~--~l---~~~~~~~ll~~~gI~v-~~g---g----Ris~~~~--~~e  442 (459)
                      +++++.+.|+ +++   ++++. .++.+++.|.  +.   +.++.++|.++ |+.+ .++   |    |+++++.  +++
T Consensus       384 ~a~~l~~~L~-~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~lRi~~~~~~~t~~  458 (486)
T 1js3_A          384 LSHEFEAFVL-QDP---RFEVCAEVTLGLVCFRLKGSDGLNEALLERINSA-RKIHLVPCRLRGQFVLRFAICSRKVESG  458 (486)
T ss_dssp             HHHHHHHHHH-HCT---TEEECSCCCSSEEEEEESSCHHHHHHHHHHHHHH-TSCBCEEEEETTEEEEEEECCCTTCCHH
T ss_pred             HHHHHHHHHh-cCC---CeEEeCCCceeEEEEEecChHHHHHHHHHHHHhc-CCEEEEEEEECCEEEEEEEeCCCCCCHH
Confidence            9999999998 762   15654 3566666553  22   34456666665 6543 322   2    9998643  678


Q ss_pred             hHHHHHHHHHHHHhhc
Q 012647          443 KCEYLADAIIDSYHNV  458 (459)
Q Consensus       443 ~i~~~~~~l~~~~~~~  458 (459)
                      ++++++++|+++++++
T Consensus       459 di~~~~~~l~~~~~~~  474 (486)
T 1js3_A          459 HVRLAWEHIRGLAAEL  474 (486)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999887653

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.91  E-value=2.6e-23  Score=205.34  Aligned_cols=291  Identities=12%  Similarity=0.092  Sum_probs=191.8

Q ss_pred             HHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchH--HHhhhCC--CCeeee
Q 012647          129 AAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK--NIFNDAR--VPWSEY  204 (459)
Q Consensus       129 ~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~--~~~~~~G--~~v~~v  204 (459)
                      .++++.+++++..       ++.+++  |+|||++++++.   ..+.+||+|++++++|..+.  ..++..|  .+++.+
T Consensus        38 ~~~~~~l~~~~~~-------~~~v~~--~~sgt~a~~~~~---~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~  105 (379)
T 3ke3_A           38 NDLLSNLKTVYNA-------EAAVII--PGSGTYGMEAVA---RQLTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVL  105 (379)
T ss_dssp             HHHHHHHHHHHTC-------SEEEEE--ESCHHHHHHHHH---HHHCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEE
T ss_pred             HHHHHHHHHHhCC-------CCEEEE--cCChhHHHHHHH---HhCCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEE
Confidence            4566667776533       256777  899999999973   44679999999999987653  3455555  467777


Q ss_pred             eeecC------CC-CCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCC
Q 012647          205 RYYDP------KT-VGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASG  277 (459)
Q Consensus       205 ~~~~~------~~-~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~  277 (459)
                      +.+..      .. ..+|++.+++++++  +++++++++.++||||.+++.+++++|+++|++||+++|+|+++.  +..
T Consensus       106 ~~~~~g~~~~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~--g~~  181 (379)
T 3ke3_A          106 TAERTEDTEAPKPFAPVDIETAVAKIKE--DKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS--GCV  181 (379)
T ss_dssp             ECEESSCCSSCCCEECCCHHHHHHHHHH--HTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC--TTC
T ss_pred             eccccccccccCCCCCCCHHHHHHHHhh--cCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc--CCc
Confidence            76421      01 25899999999964  156677778899999999999999999999999999999999965  321


Q ss_pred             CCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHH------------------HHhhccc
Q 012647          278 SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQ------------------LKRLARP  339 (459)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~------------------~~~~~~~  339 (459)
                        ..   .+    ...+.++++.|++|.++. +.++|++++   +++..+.+...                  +....+.
T Consensus       182 --~~---~~----~~~~~d~~~~s~~K~l~~-~~g~g~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~  248 (379)
T 3ke3_A          182 --WL---DM----KELGIDVLISAPQKGWSS-TPCAGLVML---SAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHA  248 (379)
T ss_dssp             --CC---CH----HHHTCSEEEECTTTTTCS-CCCEEEEEE---CHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCC
T ss_pred             --cc---cc----cccCCCEEEecchhhcCC-CCceEEEEE---CHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCC
Confidence              11   11    112346788899998863 344899877   77755544320                  0000011


Q ss_pred             cccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCC---cc-eeeecCCCHH
Q 012647          340 MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ---IG-MFSFTGLNKA  415 (459)
Q Consensus       340 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~---~g-~f~~~~l~~~  415 (459)
                      ...+++..++.++...|+   +..  ++.+++++++++++++++.+.|+ ++|    +++..+.   .+ ...+..-+.+
T Consensus       249 ~~~t~~~~~~~a~~aal~---~~~--~~g~~~~~~~~~~l~~~l~~~l~-~~g----~~~~~~~~~~~~~i~~~~~~~~~  318 (379)
T 3ke3_A          249 YHATMPTDSLRQFRDAIL---EAK--EIGFDILRDAQWELGNRVRKVLT-DKG----IESVAAEGFEAPGVVVSYTERDD  318 (379)
T ss_dssp             CSSCCCHHHHHHHHHHHH---HHH--HHCHHHHHHHHHHHHHHHHHHHH-HTT----CCBSBCTTCBCSSEEEEECSCHH
T ss_pred             CCCCCCHHHHHHHHHHHH---HHH--HhcHHHHHHHHHHHHHHHHHHHH-HcC----CEecCCccccCceEEEEccCCcc
Confidence            112444444444433332   110  12257888999999999999999 887    4544432   22 2222221233


Q ss_pred             HH-HHHHhcccEEEcCC----------C---cEEEccC-ChhhHHHHHHHHHHHHhhc
Q 012647          416 QS-DNMTNKWHVYMTKD----------G---RISLAGL-SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       416 ~~-~~ll~~~gI~v~~g----------g---Ris~~~~-~~e~i~~~~~~l~~~~~~~  458 (459)
                      .. ...++++||.+.+|          +   |||+... ++++|++++++|+++++++
T Consensus       319 ~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~  376 (379)
T 3ke3_A          319 MHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEV  376 (379)
T ss_dssp             HHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHh
Confidence            31 33445569988765          3   8987643 8899999999999998764

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.91  E-value=7.6e-23  Score=201.70  Aligned_cols=314  Identities=11%  Similarity=-0.053  Sum_probs=196.7

Q ss_pred             CCccCcHHHHHHHHHHhhcCCCCCCCC-CcccHHHHHHH-HHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH-h
Q 012647           98 LQPYVLDVVKKAENLMLERGENKEYLP-IEGLAAFNKVT-AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-Y  174 (459)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~-~~g~~~lr~ai-a~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~-~  174 (459)
                      .+++ ++.+.+++.+.++.+.   |.+ .....+|++++ |+++. .      .+++++  ++|||+++.++  +... +
T Consensus        11 ~~~~-~~~i~~a~~~~~~~~~---~~~~~~~~~~l~~~~~a~~~g-~------~~~~v~--~~sgt~al~~a--l~~l~~   75 (377)
T 3ju7_A           11 STVP-VIEYLDELKEIDASHI---YTNYGPINQRFEQTIMSGFFQ-N------RGAVTT--VANATLGLMAA--IQLKKR   75 (377)
T ss_dssp             CCCC-GGGGHHHHHHHHHHTC---CSSSCHHHHHHHHHHHHHTST-T------CSEEEE--ESCHHHHHHHH--HHHHSC
T ss_pred             CCCC-cHHHHHHHHHHHHcCC---cccCCHHHHHHHHHHHHHHhC-C------CCeEEE--eCCHHHHHHHH--HHHcCC
Confidence            3443 7888999998887654   332 34578999999 99864 1      356777  89999999998  4444 6


Q ss_pred             CCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHH-HcCCCCcEEEEeCCCCCCCCCCCCHHHHHH
Q 012647          175 FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI-KAAPGGSFILLHGCAHNPTGIDPTPEQWEK  253 (459)
Q Consensus       175 ~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i-~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~  253 (459)
                      .+||+|+++.|+|..+...++..|++++.++++ ++++.+|++++++++ ++. +++++++   |+||||..   .++++
T Consensus        76 ~~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~-~~~~~~d~~~l~~~i~~~~-~~tk~v~---~~~~~G~~---~~~~~  147 (377)
T 3ju7_A           76 KKGKYALMPSFTFPATPLAAIWCGLEPYFIDIS-IDDWYMDKTVLWDKIEELK-EEVAIVV---PYATFGSW---MNLEE  147 (377)
T ss_dssp             TTCCEEEEESSSCTHHHHHHHHTTCEEEEECBC-TTTCSBCHHHHHHHHHHHG-GGEEEEC---CBCGGGBC---CCCHH
T ss_pred             CCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC-CccCCcCHHHHHHHHhcCC-CCceEEE---EECCCCCc---cCHHH
Confidence            799999999999999999999999999999985 357899999999998 441 1277776   68999998   45778


Q ss_pred             HHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHH
Q 012647          254 IADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQL  333 (459)
Q Consensus       254 i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~  333 (459)
                      |.++|+ ||+++|+|++|......+  ..  .+.  ....+..++..+.+|.++. | +.|++  ++.++++.+++....
T Consensus       148 i~~la~-~~~~vi~D~a~a~g~~~~--~~--~~g--~~~~d~~~~S~~~~K~l~~-g-~gG~~--~~~~~~l~~~~~~~~  216 (377)
T 3ju7_A          148 YEELEK-KGVPVVVDAAPGFGLMNG--GM--HYG--QDFSGMIIYSFHATKPFGI-G-EGGLI--YSKNEEDIQRIKRMG  216 (377)
T ss_dssp             HHHHHH-TTCCBEEECTTCTTCEET--TE--ETT--TTCSSEEEEECBTTSSSCC-B-SCEEE--EESCHHHHHHHHHHT
T ss_pred             HHHHHh-cCCEEEEECCCccCCeEC--CE--ecc--CCCCcEEEEECCCCCcCCC-C-CcEEE--EECCHHHHHHHHHHH
Confidence            889999 999999999965332110  00  000  0011233444445799984 5 46666  467777554443321


Q ss_pred             Hhhcc--------ccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCc-
Q 012647          334 KRLAR--------PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQI-  404 (459)
Q Consensus       334 ~~~~~--------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~-  404 (459)
                      .....        +.....+.+.+.++...+          +.++...++.+++++++.+.|+ +++.-. +.+....+ 
T Consensus       217 ~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l----------~~l~~~~~~~~~~~~~~~~~L~-~~~~~~-~~~~~~~~~  284 (377)
T 3ju7_A          217 NFGFDTNRECTMMGFNCKMSEYAAAIGIATM----------KKWDDKLKERTRISEWYKQLLQ-SNGLMK-KGWQLQKTE  284 (377)
T ss_dssp             BTTBCTTSCBCSSCCBCCCCHHHHHHHHHHH----------HTHHHHHHHHHHHHHHHHHHHH-HTTTTT-TTCBCCCCS
T ss_pred             hcCCCCCCceeeccccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhc-CCCCcc-ccccCCCCC
Confidence            11100        011123343333332222          2245566666777777788887 664100 11111111 


Q ss_pred             -ce--eeec--C--CCHHHHHHHHhcccEEEcCC----------------C-------------cEEEc-cCChhhHHHH
Q 012647          405 -GM--FSFT--G--LNKAQSDNMTNKWHVYMTKD----------------G-------------RISLA-GLSLAKCEYL  447 (459)
Q Consensus       405 -g~--f~~~--~--l~~~~~~~ll~~~gI~v~~g----------------g-------------Ris~~-~~~~e~i~~~  447 (459)
                       .+  |+.+  .  .+.+.+...|+++||.+..+                +             |+++. .+++++++++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v  364 (377)
T 3ju7_A          285 AVIQQFMPILCPEEVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQI  364 (377)
T ss_dssp             CBCCSSEEEECCTTSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHH
T ss_pred             cceEEEEEEEeCChhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHH
Confidence             11  1111  2  12555555555579987553                0             55544 3589999999


Q ss_pred             HHHHHHHHhh
Q 012647          448 ADAIIDSYHN  457 (459)
Q Consensus       448 ~~~l~~~~~~  457 (459)
                      ++.|++++..
T Consensus       365 ~~~l~~~~~~  374 (377)
T 3ju7_A          365 VICLGQKVVS  374 (377)
T ss_dssp             HHHHTC----
T ss_pred             HHHHHHHHhc
Confidence            9999887754

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.91  E-value=7.9e-24  Score=210.46  Aligned_cols=317  Identities=9%  Similarity=0.002  Sum_probs=197.7

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CCCCCCC--cccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~~--~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +++++++.|.       .++++.+.+++.+...... ...+.+.  ....++|+.+++++...     .+++|++ .|+|
T Consensus        39 ~~~~~~~~~~-------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-----~~~~i~~-~t~g  105 (398)
T 2fyf_A           39 PRDGRFGSGP-------SKVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLP-----DGYEVIL-GNGG  105 (398)
T ss_dssp             CSSCBCCSSS-------CCCCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCC-----TTCEEEE-EETC
T ss_pred             cCCccccCCC-------CCCCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCC-----CCceEEE-eCCc
Confidence            4667777553       2347889988876311100 0123232  23567888888886432     1345542 2799


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcc-hHHHhhhC--CCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeC
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGN-HKNIFNDA--RVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG  236 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~-~~~~~~~~--G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~  236 (459)
                      |+++++++  +...+.+| .+++..+.|.. ....+...  |++++.+|++  +++..+.+     ++   +++++++++
T Consensus       106 ~t~al~~~--~~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~g~~~~~~-----i~---~~~~~v~~~  172 (398)
T 2fyf_A          106 ATAFWDAA--AFGLIDKR-SLHLTYGEFSAKFASAVSKNPFVGEPIIITSD--PGSAPEPQ-----TD---PSVDVIAWA  172 (398)
T ss_dssp             HHHHHHHH--HHHTCSSC-EEEEECSHHHHHHHHHHHHCTTSCCCEEEECC--TTCCCCCC-----CC---TTCSEEEEE
T ss_pred             hhHHHHHH--HHHhcCCC-eEEEeCCHHHHHHHHHHHHhCCCCceEEEecC--CCCCCCcc-----cc---CCCCEEEEe
Confidence            99999998  33346676 22333333321 12234555  8899999884  33333321     33   367788889


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceE
Q 012647          237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (459)
Q Consensus       237 ~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~  316 (459)
                      +|+||||.+++.+++.++      +|+++|+|++|..+...   .+   +    ..  .++++.|+||.+|++| ++||+
T Consensus       173 ~~~nptG~~~~~~~i~~~------~~~~vivD~a~~~~~~~---~~---~----~~--~di~~~s~sK~~~~~g-g~g~l  233 (398)
T 2fyf_A          173 HNETSTGVAVAVRRPEGS------DDALVVIDATSGAGGLP---VD---I----AE--TDAYYFAPQKNFASDG-GLWLA  233 (398)
T ss_dssp             SEETTTTEECCCCCCTTC------C-CEEEEECTTTTTTSC---CC---G----GG--CSEEEECTTSTTCSCS-SEEEE
T ss_pred             CcCCCcceecchHHhhhh------cCCeEEEEeccccCCcc---cC---c----cc--CcEEEEecCcccCCCC-ceEEE
Confidence            999999999887776654      89999999998765421   11   1    11  3578899999999876 59998


Q ss_pred             EEEeCChhHHHHHHHHHH---------------h-h-ccccccCCchHHHHHHHHHhCChhhHHHHHHH--HHHHHHHHH
Q 012647          317 NVVCSSSDLAARVKSQLK---------------R-L-ARPMYSNPPVHGARIVANVVGNPALFDEWKAE--MEMMAGRIK  377 (459)
Q Consensus       317 ~~v~~~~~~~~~~~~~~~---------------~-~-~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~--~~~~~~~~~  377 (459)
                      ++   +++.++.+.....               . . ....+.+++..++.++...|+.  +    .+.  +++++++++
T Consensus       234 ~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~--~----~~~g~~~~~~~~~~  304 (398)
T 2fyf_A          234 IM---SPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDW--L----VGNGGLDWAVKRTA  304 (398)
T ss_dssp             EE---CHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH--H----HHHTSHHHHHHHHH
T ss_pred             EE---CHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHH--H----HHccCHHHHHHHHH
Confidence            76   7776555432110               0 0 0122234555555555444421  1    122  678889999


Q ss_pred             HHHHHHHHHHhhccCCCCCccccc--C--CcceeeecC----CCH-HHHHHHHhcccEEEcCC------C--cEEEccC-
Q 012647          378 NVRQKLFDSLSAKDKSGKDWSFIL--R--QIGMFSFTG----LNK-AQSDNMTNKWHVYMTKD------G--RISLAGL-  439 (459)
Q Consensus       378 ~~~~~l~~~L~~~~g~~~~~~~~~--~--~~g~f~~~~----l~~-~~~~~ll~~~gI~v~~g------g--Ris~~~~-  439 (459)
                      ++++++.+.|+ +++   ++++..  +  .+++++|+.    ++. ++.+.|.++ ||.+.+|      +  |||++.. 
T Consensus       305 ~~~~~l~~~L~-~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gI~v~~g~~~~~~~~iRis~~~~~  379 (398)
T 2fyf_A          305 DSSQRLYSWAQ-ERP---YTTPFVTDPGLRSQVVGTIDFVDDVDAGTVAKILRAN-GIVDTEPYRKLGRNQLRVAMFPAV  379 (398)
T ss_dssp             HHHHHHHHHHH-HST---TEEESCCSGGGBCSSEEEEEECTTSCHHHHHHHHHHT-TCBCCSCCTTTCSSEEEEECCTTS
T ss_pred             HHHHHHHHHHH-HcC---CceeccCChhhcCCcEEEEECCCCCCHHHHHHHHHHC-CcEEecCcccCCCCEEEEEecCCC
Confidence            99999999999 872   155552  3  345466653    344 456666665 9999874      2  9999853 


Q ss_pred             ChhhHHHHHHHHHHHHhhc
Q 012647          440 SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       440 ~~e~i~~~~~~l~~~~~~~  458 (459)
                      +++++++++++|+++++++
T Consensus       380 t~e~i~~~~~~l~~~l~~~  398 (398)
T 2fyf_A          380 EPDDVSALTECVDWVVERL  398 (398)
T ss_dssp             CHHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHHHHhC
Confidence            8999999999999998764

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.91  E-value=6.4e-23  Score=210.21  Aligned_cols=319  Identities=12%  Similarity=0.038  Sum_probs=209.4

Q ss_pred             HHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHh------CCC----
Q 012647          108 KAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY------FPG----  177 (459)
Q Consensus       108 ~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~------~~g----  177 (459)
                      +.+...+..+ ...|....+..++++.+.+++....|.+.+++++++  |+|||+++.++...+...      .+|    
T Consensus       111 ~~l~~~~n~~-~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~--t~ggtea~~~al~~~~~~~~~~~~~~G~~~~  187 (504)
T 2okj_A          111 EWLTSTANTN-MFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIF--SPGGAISNMYSIMAARYKYFPEVKTKGMAAV  187 (504)
T ss_dssp             HHHHHHHCCB-SSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEE--ESSHHHHHHHHHHHHHHHHCTTHHHHCGGGS
T ss_pred             HHHHHhhccC-CCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEE--eCCcHHHHHHHHHHHHHHHhhHHhhcCcccc
Confidence            4444444332 245665566666676665555554454333568888  999999999985544221      146    


Q ss_pred             -C-EEEEcCCCCcchHHHhhhCCC---CeeeeeeecCCCCCCCHHHHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHH
Q 012647          178 -A-KVLISSPTWGNHKNIFNDARV---PWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPE  249 (459)
Q Consensus       178 -d-~Vlv~~p~y~~~~~~~~~~G~---~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~ii~~~p~NPTG~~~s~~  249 (459)
                       + .|+++.++|..+...++..|.   +++.+|+  ++++.+|+++|++++++.   ..+++++++++|+||||.+   +
T Consensus       188 ~~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~--~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i---~  262 (504)
T 2okj_A          188 PKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKC--NERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAF---D  262 (504)
T ss_dssp             CCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECB--CTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCB---C
T ss_pred             CCeEEEECCcchHHHHHHHHHcCCCcccEEEEec--CCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCc---C
Confidence             6 799999999999998888876   8899998  346899999999999751   1247888899999999999   7


Q ss_pred             HHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHH
Q 012647          250 QWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR  328 (459)
Q Consensus       250 ~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~  328 (459)
                      ++++|+++|++||+++++|++|..+.....  ..   +..+. ....++++.|++|.++.| .++|++++  ++++....
T Consensus       263 ~l~~I~~la~~~g~~lhvD~a~~~~~~~~~--~~---~~~~~g~~~~D~i~~~~hK~~~~p-~~~g~l~~--~~~~~~~~  334 (504)
T 2okj_A          263 PIQEIADICEKYNLWLHVDAAWGGGLLMSR--KH---RHKLNGIERANSVTWNPHKMMGVL-LQCSAILV--KEKGILQG  334 (504)
T ss_dssp             CHHHHHHHHHHHTCEEEEEETTGGGGGGCT--TT---GGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEE--SSTTHHHH
T ss_pred             CHHHHHHHHHHcCCEEEEehhhhhHHHhCH--hh---HhhcCCcccCCEEEECchhhcCCC-cceEEEEE--ECHHHHHH
Confidence            788999999999999999999987764211  11   01111 112347788999999855 68999954  55453322


Q ss_pred             HHHHHHhhcccccc--------------------CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012647          329 VKSQLKRLARPMYS--------------------NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  388 (459)
Q Consensus       329 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  388 (459)
                      .   +.........                    ....+.+.++...+.        .+.++++.++..++++++.+.|+
T Consensus       335 ~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg--------~~g~~~~~~~~~~~a~~l~~~L~  403 (504)
T 2okj_A          335 C---NQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG--------TVGFENQINKCLELAEYLYAKIK  403 (504)
T ss_dssp             H---HCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             H---hcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHHHHHh
Confidence            1   1111111100                    012333344433332        23367788889999999999998


Q ss_pred             hccCCCCCccccc---CCcceeeecCC--------------------CHHHHHHHHhcccE-EEcC----C--C--cEEE
Q 012647          389 AKDKSGKDWSFIL---RQIGMFSFTGL--------------------NKAQSDNMTNKWHV-YMTK----D--G--RISL  436 (459)
Q Consensus       389 ~~~g~~~~~~~~~---~~~g~f~~~~l--------------------~~~~~~~ll~~~gI-~v~~----g--g--Ris~  436 (459)
                       +.+   +++++.   +..++++|...                    +.++.++|.++ |+ .+.+    +  +  ||++
T Consensus       404 -~~~---~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~~~~~~~~~lRis~  478 (504)
T 2okj_A          404 -NRE---EFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQPQGDKANFFRMVI  478 (504)
T ss_dssp             -TCT---TEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHH-TSCEEEEEEETTEEEEEEECC
T ss_pred             -cCC---CEEEEecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhC-CcEEEEeeEECCceEEEEEEe
Confidence             762   156553   66777766321                    12345566665 74 3331    2  2  8998


Q ss_pred             cc--CChhhHHHHHHHHHHHHhhc
Q 012647          437 AG--LSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       437 ~~--~~~e~i~~~~~~l~~~~~~~  458 (459)
                      ++  .+++++++++++|+++++++
T Consensus       479 ~~~~~t~edi~~~~~~l~~~~~~~  502 (504)
T 2okj_A          479 SNPAATQSDIDFLIEEIERLGQDL  502 (504)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHH
Confidence            62  27899999999999988764

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.90  E-value=7.3e-22  Score=195.83  Aligned_cols=248  Identities=14%  Similarity=0.080  Sum_probs=172.4

Q ss_pred             HHHHHHHHHHhh------cCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCC
Q 012647          104 DVVKKAENLMLE------RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG  177 (459)
Q Consensus       104 ~~v~~a~~~~~~------~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~g  177 (459)
                      ..|++++.+...      ....+.| +..|..+|++.+|+++...       ..+++.++++|++++.++  +.+.+.||
T Consensus        32 ~~vl~a~~~~~~~~~~~~~~~~~~y-~~~~~~~Le~~lA~l~g~e-------~alv~p~~~sGt~Ai~~a--l~all~~G  101 (409)
T 3jzl_A           32 AKVLDAFQENKVSDFHFHPSTGYGY-DDEGRDTLERVYATVFKTE-------AALVRPQIISGTHAISTV--LFGILRPD  101 (409)
T ss_dssp             HHHHHHHHHTTCCGGGGCCCCTTCT-TCHHHHHHHHHHHHHHTCS-------EEEEETTSCSHHHHHHHH--HHHHCCTT
T ss_pred             HHHHHHHHHhhhhhhccCCCcCCCC-ChhHHHHHHHHHHHHhCCC-------cEEEECCCccHHHHHHHH--HHHhcCCC
Confidence            557777776531      1122445 3457789999999997542       334322257889999888  55557899


Q ss_pred             CEEEEcC-CCCcchHH----------HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCC----CCCCC
Q 012647          178 AKVLISS-PTWGNHKN----------IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC----AHNPT  242 (459)
Q Consensus       178 d~Vlv~~-p~y~~~~~----------~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~----p~NPT  242 (459)
                      |+|++++ |.|..+..          .++..|++++.+|++  +++.+|++++++++++   +++++++++    |+|||
T Consensus       102 D~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~--~~g~~d~e~l~~ai~~---~tklV~i~~s~g~p~npt  176 (409)
T 3jzl_A          102 DELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLL--ENGDVDFPRIAKKMTP---KTKMIGIQRSRGYADRPS  176 (409)
T ss_dssp             CEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCC--TTSCCCHHHHHHHCCT---TEEEEEEECSCTTSSSCC
T ss_pred             CEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCC--CCCCcCHHHHHHhccC---CCeEEEEECCCCCCCCCc
Confidence            9999998 99998874          446779999999984  4678999999999975   788999898    99999


Q ss_pred             CCCCCHHHHHHHHHHHHh--cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCC-CcceEEEE
Q 012647          243 GIDPTPEQWEKIADVIQE--KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVV  319 (459)
Q Consensus       243 G~~~s~~~l~~i~~l~~~--~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~~~v  319 (459)
                      |.+   .++++|+++|++  ||+++++|++|..+.+..   ...       ..+.+++++|+||.++.+|. +.||+++ 
T Consensus       177 g~v---~~l~~I~~la~~~~~~~~livD~a~~~~~~~~---~p~-------~~g~Div~~S~sK~lgg~~~~~GG~v~~-  242 (409)
T 3jzl_A          177 FTI---EKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQ---EPP-------EVGADIIAGSLIKNPGGGLAKTGGYIAG-  242 (409)
T ss_dssp             CCH---HHHHHHHHHHHHHCTTCEEEEECTTCTTTSSC---CSG-------GGTCSEEEEETTSGGGTTTCSSCEEEEE-
T ss_pred             Ccc---ccHHHHHHHHHhhCCCCEEEEeCCcccccccC---Ccc-------ccCCeEEEECccccCCccCCceEEEEEe-
Confidence            998   899999999999  999999999998776321   111       11346899999999996663 3577655 


Q ss_pred             eCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012647          320 CSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  393 (459)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  393 (459)
                        ++++++.+.............++....+.++...|          +.+...+++..+++.++.+.|+ ++|+
T Consensus       243 --~~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl----------~~~~~r~~~~~~~a~~la~~L~-~~g~  303 (409)
T 3jzl_A          243 --KEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGF----------FLAPHVTAQAIKGARFTAAMLA-EFGV  303 (409)
T ss_dssp             --CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH-HTTC
T ss_pred             --CHHHHHHHHHHhccccccccccccHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHHHHH-hCCC
Confidence              78866666553321100011122111122222111          2245667778889999999999 8873

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.83  E-value=1.5e-25  Score=225.35  Aligned_cols=334  Identities=14%  Similarity=0.054  Sum_probs=209.6

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...|||..|.+....+.  -+|.|.+++.+.+.......| +.....+|.+.+++++.+       .+.+++  +++|+
T Consensus        99 G~~yiD~~~~~~~~~lGh--~~p~V~~Av~~q~~~~~~~~~-~~~~~~~Lae~L~~~~p~-------~~~v~~--~nSGs  166 (465)
T 2yky_A           99 GHAYVNFLGEYTAGLFGH--SHPVIRAAVERALAVGLNLST-QTENEALFAEAVCDRFPS-------IDLVRF--TNSGT  166 (465)
Confidence            357889988875332333  268899998887765432344 555567788888887531       467888  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh----hCCC--CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEe
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARV--PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~G~--~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~  235 (459)
                      +|+..+.++...+..+++|++.+++|..+.....    ..|+  .++.+|.       .|++.+++.+++.+++++++++
T Consensus       167 eA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-------~d~~~l~~~l~~~~~~~aavi~  239 (465)
T 2yky_A          167 EANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-------NDVEGTADLLKRHGHDCAAILV  239 (465)
Confidence            9999997665444566999999999977654332    1233  2333332       2788899888743336667776


Q ss_pred             CCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcc
Q 012647          236 GCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIG  314 (459)
Q Consensus       236 ~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG  314 (459)
                      ...+|+||.+ .+++.+++|.++|++||+++|+||+|. +..+.    ......+ ...++   +.||||.+|. |+|+|
T Consensus       240 epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~----~~a~~~~-gv~pD---i~t~sK~lg~-G~piG  309 (465)
T 2yky_A          240 EPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSG----GGAQEML-GISAD---LTTLGKYIGG-GMSFG  309 (465)
Confidence            6556679964 468889999999999999999999998 64321    1111111 11122   3489999995 99999


Q ss_pred             eEEEEeCChhHHHHHHHH-HHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012647          315 AMNVVCSSSDLAARVKSQ-LKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  393 (459)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  393 (459)
                      |+++   +++.++.+... ........+.+.+.+++.++...|+.-      ++  +...++++++.+++.+.|+ ++.-
T Consensus       310 ~v~~---~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l------~~--~~~~~~~~~~~~~l~~~L~-~~~~  377 (465)
T 2yky_A          310 AFGG---RRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQI------YT--RQAASDLSASGDRFRANLN-RIAV  377 (465)
Confidence            9866   77755554431 010111223345555666654444311      00  2345556666666666665 4310


Q ss_pred             CCCcccccCCcceeeecCCC------------------HHHHHHHHhcccEEEcCCC--cEEEccCChhhHHHHHHHHHH
Q 012647          394 GKDWSFILRQIGMFSFTGLN------------------KAQSDNMTNKWHVYMTKDG--RISLAGLSLAKCEYLADAIID  453 (459)
Q Consensus       394 ~~~~~~~~~~~g~f~~~~l~------------------~~~~~~ll~~~gI~v~~gg--Ris~~~~~~e~i~~~~~~l~~  453 (459)
                      ..++....+..|.++|+.+.                  ..+++.|++ +||++.|++  .+++.. +++++++++++|.+
T Consensus       378 ~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~-~GV~v~p~~~~~~s~~~-t~edid~~l~~l~~  455 (465)
T 2yky_A          378 ENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLR-KGIYLAPRGMYALSLEI-ADAGRDAFAEALAD  455 (465)
Confidence            00011122334545554321                  234556776 599999876  356654 89999999999999


Q ss_pred             HHhhc
Q 012647          454 SYHNV  458 (459)
Q Consensus       454 ~~~~~  458 (459)
                      +++++
T Consensus       456 ~l~~~  460 (465)
T 2yky_A          456 FIGEQ  460 (465)
Confidence            98765

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.90  E-value=9e-22  Score=195.85  Aligned_cols=249  Identities=14%  Similarity=0.067  Sum_probs=172.6

Q ss_pred             HHHHHHHHHHhh------cCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCC
Q 012647          104 DVVKKAENLMLE------RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG  177 (459)
Q Consensus       104 ~~v~~a~~~~~~------~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~g  177 (459)
                      +.|++++.+...      ....+.| +..|..+|++.+|+++...       ..+++.|+++|++++.++  +.+.+.||
T Consensus        46 ~~Vl~A~~~~~~~~~~~~~~~gy~y-~~~~~~~Le~~lA~l~g~e-------~alv~p~~~sGt~Ai~~a--l~all~pG  115 (427)
T 3i16_A           46 LKVLNAFQEERISEAHFTNSSGYGY-GDIGRDSLDAVYARVFNTE-------SALVRPHFVNGTHALGAA--LFGNLRPG  115 (427)
T ss_dssp             HHHHHHHHHTTCCGGGSCCCCTTCT-TCHHHHHHHHHHHHHHTCS-------EEEEETTCCSHHHHHHHH--HHHHCCTT
T ss_pred             HHHHHHHHHhchhHHhcCCCCCCCC-CHHHHHHHHHHHHHHhCCc-------ceEEeCCCccHHHHHHHH--HHHHhCCC
Confidence            567788776431      1112344 4457889999999997543       234422257889999887  55567899


Q ss_pred             CEEEEcC-CCCcchHH-----------HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCC----CCCC
Q 012647          178 AKVLISS-PTWGNHKN-----------IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC----AHNP  241 (459)
Q Consensus       178 d~Vlv~~-p~y~~~~~-----------~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~----p~NP  241 (459)
                      |+|++++ |.|..+..           .++..|++++.+|++  +++.+|++++++++++. ++++++++++    |+||
T Consensus       116 D~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~--~~g~~D~e~l~~~l~~~-~~tklV~i~~s~~~p~np  192 (427)
T 3i16_A          116 NTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLK--EDGKPNLEEIEKVLKED-ESITLVHIQRSTGYGWRR  192 (427)
T ss_dssp             CEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCC--TTSSCCHHHHHHHHHTC-TTEEEEEEECSCCSSSSC
T ss_pred             CEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCc--cCCCcCHHHHHHHhhCC-CCCEEEEEEcCCCCCCCC
Confidence            9999999 99988874           345679999999884  35679999999999831 2788888888    9999


Q ss_pred             CCCCCCHHHHHHHHHHHHh--cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCC-CCcceEEE
Q 012647          242 TGIDPTPEQWEKIADVIQE--KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNV  318 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~--~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~  318 (459)
                      ||.+   .++++|+++|++  +|+++++|++|..+.+..   ..  .     ..+.+++++|+||.+|.+| .+.||+++
T Consensus       193 tg~i---~dl~~i~~la~~~~~g~~livD~a~~~~~~~~---~p--~-----~~gaDiv~~S~sK~lgg~g~~~gG~i~~  259 (427)
T 3i16_A          193 ALLI---EDIKSIVDCVKNIRKDIICFVDNCYGEFMDTK---EP--T-----DVGADLIAGSLIKNIGGGIAPTGGYLAG  259 (427)
T ss_dssp             CCCH---HHHHHHHHHHHHHCTTSEEEEECTTTTTSSSS---CG--G-----GGTCSEEEEETTSGGGTTTCCSCEEEEE
T ss_pred             cccH---HHHHHHHHHHHHhCCCCEEEEECCCccccccC---Cc--c-----ccCCeEEEecCcccCCCCCCceEEEEEE
Confidence            9988   999999999999  999999999998776321   11  1     1134689999999998666 56788765


Q ss_pred             EeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          319 VCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                         ++++++++...+.........++..-....+...+          +.+..+.++..+++.++.+.|+ ++|
T Consensus       260 ---~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl----------~~~~~r~~~~~~~a~~la~~L~-~~g  319 (427)
T 3i16_A          260 ---TKDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGL----------FLAPHISMEALKGAILCSRIME-LAG  319 (427)
T ss_dssp             ---CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH-HTT
T ss_pred             ---CHHHHHHHHHhcccCccCccCCccHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH-hCC
Confidence               88866665543221100111122111122222111          2245677888889999999999 887

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.90  E-value=3.9e-22  Score=199.37  Aligned_cols=159  Identities=13%  Similarity=0.040  Sum_probs=126.7

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HhhhCCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARV  199 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~G~  199 (459)
                      +.....+|++.++++...        +..++  +++|++|+.++  +...+.+||+|++++|+|..+..    .++..|+
T Consensus        80 ~~p~~~~le~~lA~l~g~--------~~~v~--~~sG~~Ai~~a--l~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~  147 (430)
T 3ri6_A           80 SNPTVEDLEQRLKNLTGA--------LGVLA--LGSGMAAISTA--ILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGI  147 (430)
T ss_dssp             CCHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCC
Confidence            556778999999998643        22444  56778999988  44457899999999999988777    6678899


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~  279 (459)
                      +++.+|.+       |++++++++++   +++++++++|+||||.++   ++++|+++|+++|+++|+|++|....... 
T Consensus       148 ~~~~v~~~-------d~~~l~~ai~~---~t~~v~~e~p~NptG~~~---dl~~i~~la~~~g~~livD~a~~~~~~~~-  213 (430)
T 3ri6_A          148 EVRFVDVM-------DSLAVEHACDE---TTKLLFLETISNPQLQVA---DLEALSKVVHAKGIPLVVDTTMTPPYLLE-  213 (430)
T ss_dssp             EEEEECTT-------CHHHHHHHCCT---TEEEEEEESSCTTTCCCC---CHHHHHHHHHTTTCCEEEECTTSCTTTCC-
T ss_pred             EEEEeCCC-------CHHHHHHhhCC---CCeEEEEECCCCCCCeec---CHHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence            99998762       89999999875   788999999999999996   47789999999999999999987544311 


Q ss_pred             CCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012647          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (459)
Q Consensus       280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (459)
                         ..       ..+.++++.|+||.++.+|..+|.+++
T Consensus       214 ---~~-------~~g~div~~S~sK~l~g~g~~~gG~vv  242 (430)
T 3ri6_A          214 ---AK-------RLGVDIEVLSSTKFISGGGTSVGGVLI  242 (430)
T ss_dssp             ---GG-------GGTCSEEEEECCCEEETTEEECCEEEE
T ss_pred             ---hH-------HcCCEEEEECCcccccCCCCceEEEEE
Confidence               11       123468999999999988877888754

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.90  E-value=1.3e-21  Score=200.29  Aligned_cols=326  Identities=11%  Similarity=0.031  Sum_probs=217.1

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHh---------
Q 012647          104 DVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY---------  174 (459)
Q Consensus       104 ~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~---------  174 (459)
                      ..+.+.+...+..+ ...|....+..++++++++++....|.+..+..+++  |+|||+|+..+......-         
T Consensus       110 ~~~~e~l~~~~~~~-~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~--t~ggt~a~~~al~~a~~~~~~~~~~~G  186 (511)
T 3vp6_A          110 GLAGEWLTSTANTN-MFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIF--SPGGAISNMYSIMAARYKYFPEVKTKG  186 (511)
T ss_dssp             HHHHHHHHHHHCCC-SSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEE--ESSHHHHHHHHHHHHHHHHCTHHHHHC
T ss_pred             HHHHHHHHHHhccC-CCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEE--CCchHHHHHHHHHHHHHHhhhhhhhcC
Confidence            34456666666544 377888889999999999998777776655578888  999999998874333221         


Q ss_pred             ---CCCCEEEEcCCCCcchHHHhhhCCC---CeeeeeeecCCCCCCCHHHHHHHHHcC---CCCcEEEEeCCCCCCCCCC
Q 012647          175 ---FPGAKVLISSPTWGNHKNIFNDARV---PWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGID  245 (459)
Q Consensus       175 ---~~gd~Vlv~~p~y~~~~~~~~~~G~---~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~ii~~~p~NPTG~~  245 (459)
                         .+++.|+++.++|..+...++..|.   +++.+|++  +++.+|+++|+++|++.   ...++++++++++||||.+
T Consensus       187 ~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d--~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~v  264 (511)
T 3vp6_A          187 MAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAF  264 (511)
T ss_dssp             GGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCB
T ss_pred             cccCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecC--CCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccc
Confidence               1578999999999999999999998   88899984  46899999999999762   1127888899999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEEcCCcCcccCCCCcceEEEEeCChh
Q 012647          246 PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (459)
Q Consensus       246 ~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~  324 (459)
                         +++++|+++|++||+++++|++|........   ..  +..+. ....++++.+++|.++.| ..+|+++  +++++
T Consensus       265 ---d~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~---~~--~~~~~g~~~aDsv~~~~hK~l~~p-~g~g~l~--~~~~~  333 (511)
T 3vp6_A          265 ---DPIQEIADICEKYNLWLHVDAAWGGGLLMSR---KH--RHKLNGIERANSVTWNPHKMMGVL-LQCSAIL--VKEKG  333 (511)
T ss_dssp             ---CCHHHHHHHHHHHTCEEEEEETTGGGGGGCT---TT--GGGGTTGGGCSEEEECTTSTTCCC-SCCEEEE--ESSTT
T ss_pred             ---ccHHHHHHHHHHcCCEEEEEccchhhHhhCh---hh--hhhccCCccCCEEEECcccccCCC-cCeEEEE--EeCHH
Confidence               8899999999999999999999877553210   00  01111 112356778999998755 5588884  45555


Q ss_pred             HHHHHHHHHHhhcccc------------c----c-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          325 LAARVKSQLKRLARPM------------Y----S-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSL  387 (459)
Q Consensus       325 ~~~~~~~~~~~~~~~~------------~----~-~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  387 (459)
                      ................            +    + ....+...++...+.        .+.++++.++..++.+++.+.|
T Consensus       334 ~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g--------~~gl~~~~~~~~~~a~~l~~~L  405 (511)
T 3vp6_A          334 ILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG--------TVGFENQINKCLELAEYLYAKI  405 (511)
T ss_dssp             HHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHH
Confidence            3322211000000000            0    0 012223333332221        2346788889999999999999


Q ss_pred             hhccCCCCCccccc---CCcceeeec----CC----------------CHHHHHHHHhcccEEEcC-----CC----cEE
Q 012647          388 SAKDKSGKDWSFIL---RQIGMFSFT----GL----------------NKAQSDNMTNKWHVYMTK-----DG----RIS  435 (459)
Q Consensus       388 ~~~~g~~~~~~~~~---~~~g~f~~~----~l----------------~~~~~~~ll~~~gI~v~~-----gg----Ris  435 (459)
                      + +.+   ++++..   +..++++|.    ++                +.++.++|+++ |+.+..     ++    ||+
T Consensus       406 ~-~~p---g~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-G~~~~~~~~~~~~~~~lRi~  480 (511)
T 3vp6_A          406 K-NRE---EFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQPQGDKANFFRMV  480 (511)
T ss_dssp             H-SCT---TEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHH-TSCEEEEEEETTEEEEEEEC
T ss_pred             h-cCC---CEEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEEEEEeCCceEEEEEE
Confidence            8 762   156654   555655552    11                11345566665 754332     22    888


Q ss_pred             EccC--ChhhHHHHHHHHHHHHhhc
Q 012647          436 LAGL--SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       436 ~~~~--~~e~i~~~~~~l~~~~~~~  458 (459)
                      +++.  ++++|+.++++|+++-+.+
T Consensus       481 ~~~~~~t~~di~~ll~~i~~~~~~~  505 (511)
T 3vp6_A          481 ISNPAATQSDIDFLIEEIERLGQDL  505 (511)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred             ecCCCCCHHHHHHHHHHHHHHHHhh
Confidence            8432  7899999999998876543

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.89  E-value=3e-21  Score=192.06  Aligned_cols=249  Identities=13%  Similarity=0.050  Sum_probs=171.3

Q ss_pred             cHHHHHHHHHHhhc------CCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCC
Q 012647          103 LDVVKKAENLMLER------GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP  176 (459)
Q Consensus       103 ~~~v~~a~~~~~~~------~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~  176 (459)
                      .+.|++++.+....      ...+.| +..|..+|++.+|+++...       ..++..|+++|++|+.++  +.+.+.|
T Consensus        46 ~~~Vl~a~~~~~~~~~~~~~~~gy~Y-~~~g~~~Le~~lA~l~g~e-------~alv~p~~~sGt~A~~~a--l~all~p  115 (427)
T 3hvy_A           46 QLKVLKAFQEERISESHFTNSSGYGY-NDIGRDSLDRVYANIFNTE-------SAFVRPHFVNGTHAIGAA--LFGNLRP  115 (427)
T ss_dssp             HHHHHHHHHHTTCCGGGSCCCCTTCT-TCHHHHHHHHHHHHHHTCS-------EEEEETTCCSHHHHHHHH--HHHTCCT
T ss_pred             HHHHHHHHHHHHHHHHhcccCcCCCC-CchhHHHHHHHHHHHhCCC-------ceEEeCCCCcHHHHHHHH--HHHhcCC
Confidence            36788888775321      122445 3447899999999997542       224311257889999887  5556789


Q ss_pred             CCEEEEcC-CCCcchHH-----------HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCC----CCC
Q 012647          177 GAKVLISS-PTWGNHKN-----------IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC----AHN  240 (459)
Q Consensus       177 gd~Vlv~~-p~y~~~~~-----------~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~----p~N  240 (459)
                      ||+|++++ |.|..+..           .++..|++++.+|.   +++.+|++++++++++. ++++++++++    |+|
T Consensus       116 GD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~---~~~~~d~e~l~~~i~~~-~~tklV~i~~s~gyp~n  191 (427)
T 3hvy_A          116 NDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL---KDGKVDINTVKEELKKD-DSIKLIHIQRSTGYGWR  191 (427)
T ss_dssp             TCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC---BTTBCCHHHHHHHHHHC-TTEEEEEEESSCCSSSS
T ss_pred             CCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecC---CCCCcCHHHHHHHhhCC-CCCEEEEEECCCCCCCC
Confidence            99999999 99988763           45567999999887   25689999999999831 2788888888    999


Q ss_pred             CCCCCCCHHHHHHHHHHHHh--cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCC-CCcceEE
Q 012647          241 PTGIDPTPEQWEKIADVIQE--KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMN  317 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~--~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~  317 (459)
                      |||.+   .++++|+++|++  +|+++++|++|..+.+..   .  ..     ..+.+++++|+||.++.+| .+.||++
T Consensus       192 ptg~v---~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~---~--p~-----~~gaDiv~~S~sK~lgg~g~~~GG~i~  258 (427)
T 3hvy_A          192 KSLRI---AEIAEIIKSIREVNENVIVFVDNCYGEFVEEK---E--PT-----DVGADIIAGSLIKNIGGGIATTGGYIA  258 (427)
T ss_dssp             CCCCH---HHHHHHHHHHHHHCSSSEEEEECTTCTTTSSS---C--GG-----GGTCSEEEEETTSGGGTTTCCSCEEEE
T ss_pred             ccccH---HHHHHHHHHHHHhCCCCEEEEECCccccccCC---C--Cc-----ccCCeEEEECCcccccccccceEEEEE
Confidence            99988   999999999999  899999999998776321   1  11     1134689999999998655 4457765


Q ss_pred             EEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          318 VVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       318 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                      +   ++++++++.............+++...+.++...+          +.+..+.++..+++.++.+.|+ ++|
T Consensus       259 ~---~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl----------~~~~~r~~~~~~~a~~la~~L~-~~g  319 (427)
T 3hvy_A          259 G---KEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGL----------FMAPHVTIEAVKGAVFCARIME-LAG  319 (427)
T ss_dssp             E---CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH-HTT
T ss_pred             E---CHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhH----------hHHHHHHHHHHHHHHHHHHHHH-hCC
Confidence            5   78866665543221100111122111122222111          2235667778888999999999 887

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.89  E-value=7.6e-23  Score=206.17  Aligned_cols=285  Identities=11%  Similarity=0.067  Sum_probs=174.7

Q ss_pred             CCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCC
Q 012647          121 EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVP  200 (459)
Q Consensus       121 ~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~  200 (459)
                      .|.+.....++++.+++ +..       .+++++  |+|+|+++.++  +...+.+||+|+++.|+|..+...+...|++
T Consensus        52 ~~~~~~~~~~~~~~la~-~g~-------~~~v~~--~~G~t~a~~~~--~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~  119 (446)
T 2x3l_A           52 LHHPEEVILKSMKQVEK-HSD-------YDGYFL--VNGTTSGILSV--IQSFSQKKGDILMARNVHKSVLHALDISQQE  119 (446)
T ss_dssp             TTSCSSHHHHHHHHHCS-CTT-------EEEEEE--SSHHHHHHHHH--HHTTTTSSSCEEECTTCCHHHHHHHHHHTCC
T ss_pred             ccCcchHHHHHHHHHHh-cCC-------CceEEE--eCCHHHHHHHH--HHHhcCCCCEEEEecCccHHHHHHHHHcCCe
Confidence            45566677888888887 532       256888  99999999998  4444679999999999999999999999999


Q ss_pred             eeeeeeecCCC----CCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCC-CC
Q 012647          201 WSEYRYYDPKT----VGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG-FA  275 (459)
Q Consensus       201 v~~v~~~~~~~----~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~-~~  275 (459)
                      ++.++...+++    +.+|++.+   +.+   +++++++++ +|+||.+.+   +++|+++|++||+++|+||+|.. +.
T Consensus       120 ~~~v~~~~~~~~~~~~~~d~~~l---~~~---~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~  189 (446)
T 2x3l_A          120 GHFIETHQSPLTNHYNKVNLSRL---NND---GHKLVVLTY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFG  189 (446)
T ss_dssp             EEECEEEECTTTSSEEEEEC-------------CCEEEEES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTT
T ss_pred             EEEEeCeeccccCcCCCCCHHHH---cCC---CceEEEEEC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhc
Confidence            99999832323    56788877   332   566777777 566999965   77899999999999999999886 32


Q ss_pred             CCCCCCChhHHHHHHhcCCeEEEEEcCCcC-cccCCCCcceEEEEeCChhHHH--HHHHHHHhhccccccCCchHHHHHH
Q 012647          276 SGSLDNDASSVRLFATRGMELLVAQSYSKN-LGLYAERIGAMNVVCSSSDLAA--RVKSQLKRLARPMYSNPPVHGARIV  352 (459)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~~G~RiG~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  352 (459)
                      +.+.   ....   ... +..+++.|+||. +++.  ++||+++   +++.++  .+.......   ...+++.....++
T Consensus       190 f~~~---~~~~---~~~-g~Di~~~S~~K~l~~~~--g~g~l~~---~~~~i~~~~~~~~~~~~---~~~s~~~~~~aal  254 (446)
T 2x3l_A          190 LQGF---PDST---LNY-QADYVVQSFHKTLPALT--MGSVLYI---HKNAPYRENIIEYLSYF---QTSSPSYLIMASL  254 (446)
T ss_dssp             STTS---CCCG---GGG-TCSEEEECHHHHSSSCT--TCEEEEE---ETTCTTHHHHHHHHHHH---SCSSCCHHHHHHH
T ss_pred             cCCC---CCCh---HHc-CCCEEEECCcccccccc--ccEEEEE---cCCcCCHHHHHHHHHHH---cCCCchHHHHHHH
Confidence            3221   1111   111 234899999995 4444  4899965   444322  333222221   1223333222222


Q ss_pred             HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeec---CCCHHH-HHHHHhcccEEE
Q 012647          353 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT---GLNKAQ-SDNMTNKWHVYM  428 (459)
Q Consensus       353 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~---~l~~~~-~~~ll~~~gI~v  428 (459)
                      ...+   ++.+.+  ..++..++.++    +.+.+. +.|    +++..+..+.++|+   +.+... .+.|.++ ||.+
T Consensus       255 ~~a~---~~l~~~--g~~~~~~~~~~----l~~~l~-~~g----~~~~~~~~~~~l~i~~~~~~~~~l~~~L~~~-GI~v  319 (446)
T 2x3l_A          255 ESAA---QFYKTY--DSTLFFAKRAQ----LIECLE-NKG----FEMLQVDDPLKLLIKYEGFTGHDIQNWFMNA-HIYL  319 (446)
T ss_dssp             HHHH---HHHHHC--CCHHHHHHHHH----HHHHHH-HHT----CEEEECSSTTEEEEECTTSCHHHHHHHHHHT-TEEE
T ss_pred             HHHH---HHHHHh--CHHHHHHHHHH----HHHHHH-HcC----CEECcCCCCeEEEEEeCCcCHHHHHHHHHHC-CCEE
Confidence            1111   111000  00113333333    334444 323    45554444445555   345544 5566564 9999


Q ss_pred             c-CCC---cEEEccC-ChhhHHHHHHHHHHHHhhc
Q 012647          429 T-KDG---RISLAGL-SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       429 ~-~gg---Ris~~~~-~~e~i~~~~~~l~~~~~~~  458 (459)
                      . +|.   |++++.. +++++ +++++|+++++++
T Consensus       320 ~~~g~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~  353 (446)
T 2x3l_A          320 ELADDYQALAILPLWHHDDTY-LFDSLLRKIEDMI  353 (446)
T ss_dssp             SEECSSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred             EecCCCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence            8 553   9998753 78899 9999999987653

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.89  E-value=1.2e-21  Score=195.17  Aligned_cols=214  Identities=10%  Similarity=0.027  Sum_probs=149.0

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh----hhCCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARV  199 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~G~  199 (459)
                      +.....++++.+|+++..        +++++  ++||++|++++  +...+.+||+|+++.|.|......+    +..|+
T Consensus        80 ~~p~~~~le~~lA~l~g~--------~~~i~--~ssGt~Ai~~a--l~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~  147 (415)
T 2fq6_A           80 GTLTHFSLQQAMCELEGG--------AGCVL--FPCGAAAVANS--ILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGV  147 (415)
T ss_dssp             CCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTC
T ss_pred             CCchHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCc
Confidence            445567899999999743        34555  68889999988  4444679999999999998766543    46788


Q ss_pred             CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh--cCCeeEEeccCCCCCCC
Q 012647          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE--KNHIPFFDVAYQGFASG  277 (459)
Q Consensus       200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~--~~~~ii~Deay~~~~~~  277 (459)
                      +++.++.+       |++++++++++   +++++++++|+||||.++   ++++|+++|++  +|+++|+|++|......
T Consensus       148 ~v~~v~~~-------d~~~le~ai~~---~tklV~~e~~~NptG~v~---dl~~I~~la~~~~~g~~livD~a~a~~~~~  214 (415)
T 2fq6_A          148 TTSWFDPL-------IGADIVKHLQP---NTKIVFLESPGSITMEVH---DVPAIVAAVRSVVPDAIIMIDNTWAAGVLF  214 (415)
T ss_dssp             EEEEECTT-------CGGGGGGGCCT---TEEEEEEESSCTTTCCCC---CHHHHHHHHHHHCTTCEEEEECTTTTTTSS
T ss_pred             EEEEECCC-------CHHHHHHhhcc---CCcEEEEECCCCCCCEee---cHHHHHHHHHhhcCCCEEEEECCCcccccC
Confidence            88888651       78999988875   789999999999999995   57889999999  99999999998754321


Q ss_pred             CCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc-ceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHh
Q 012647          278 SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVV  356 (459)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  356 (459)
                          .  .+     ..+.++++.|+||.++.+|.++ ||+++   +++.++.+......   . ....+...+.++...+
T Consensus       215 ----~--p~-----~~g~Div~~S~sK~lg~~g~~~~G~l~~---~~~~~~~l~~~~~~---~-G~~~~~~~a~~~~~~l  276 (415)
T 2fq6_A          215 ----K--AL-----DFGIDVSIQAATKYLVGHSDAMIGTAVC---NARCWEQLRENAYL---M-GQMVDADTAYITSRGL  276 (415)
T ss_dssp             ----C--GG-----GGTCSEEEEETTTTTTCSSSCCCEEEEE---CTTTHHHHHHHHHH---T-TCCCCHHHHHHHHHHH
T ss_pred             ----C--cc-----ccCCeEEEEeCccccCCCCCceEEEEEe---CHHHHHHHHHHHHh---c-CCCCCHHHHHHHHhhh
Confidence                1  11     1235789999999999888765 77754   55655555443221   1 1122333222222211


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          357 GNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                                +.+....++..++.+.+.+.|+ +.
T Consensus       277 ----------~~l~~r~~~~~~n~~~l~~~L~-~~  300 (415)
T 2fq6_A          277 ----------RTLGVRLRQHHESSLKVAEWLA-EH  300 (415)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred             ----------hHHHHHHHHHHHHHHHHHHHHH-cC
Confidence                      1234445555666777777776 54

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.89  E-value=2.1e-22  Score=204.40  Aligned_cols=340  Identities=11%  Similarity=-0.020  Sum_probs=211.8

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC---CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG---ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~---~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      +...|||..|.+-...++  -+|.|.+++.+.+...   ....|+. ....++++++++.+....+.  ..++|++  ++
T Consensus        62 G~~ylD~~~g~~~~~lGh--~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~~--~~~~v~f--~~  134 (472)
T 1ohv_A           62 GNRMLDLYSQISSIPIGY--SHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAPK--GMSQLIT--MA  134 (472)
T ss_dssp             SCEEEESSHHHHTCSSCB--TCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCCT--TCCEEEE--ES
T ss_pred             CCEEEECCCCHhhcccCC--CCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCCC--CcCEEEE--eC
Confidence            457899999987433444  3788999998765321   1122332 34578999999866554322  3578999  99


Q ss_pred             cchhHHHHHHHHHHHh------C-----------------CC---CEEEEcCCCCcchHHHh-hhCCCCe----------
Q 012647          159 SGTGSLRLAAALIERY------F-----------------PG---AKVLISSPTWGNHKNIF-NDARVPW----------  201 (459)
Q Consensus       159 ggt~a~~l~~~~~~~~------~-----------------~g---d~Vlv~~p~y~~~~~~~-~~~G~~v----------  201 (459)
                      ||++|++.+.++...+      .                 ||   ++|++.+++|.++.... ...|.+.          
T Consensus       135 sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~  214 (472)
T 1ohv_A          135 CGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFD  214 (472)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCC
T ss_pred             CchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCC
Confidence            9999999997766422      1                 46   89999999998765433 2333221          


Q ss_pred             -eeeeeecC--C---C--C-----CCCHHHHHHHHHcCC---CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCe
Q 012647          202 -SEYRYYDP--K---T--V-----GLDFEGMIADIKAAP---GGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHI  264 (459)
Q Consensus       202 -~~v~~~~~--~---~--~-----~~d~e~l~~~i~~~~---~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~  264 (459)
                       ..+++...  .   .  +     ..|++.|++.+++..   .+++++++.+.+|+||. .++++.+++|.++|++||++
T Consensus       215 ~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~l  294 (472)
T 1ohv_A          215 WPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCA  294 (472)
T ss_dssp             CCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCE
T ss_pred             CcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCE
Confidence             11122100  0   0  0     126888988887521   15778887778899996 57899999999999999999


Q ss_pred             eEEeccCCCCCCCCCCCChhHHHHHHhcC--CeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhcccccc
Q 012647          265 PFFDVAYQGFASGSLDNDASSVRLFATRG--MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYS  342 (459)
Q Consensus       265 ii~Deay~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~  342 (459)
                      +|+||+|.+++..+   ..+.+..+ +..  .+   +.||||.+ +.|   ||+  +  +++    +. .........+.
T Consensus       295 li~DEv~~g~g~~g---~~~~~~~~-gv~~~~D---i~t~sK~~-l~G---G~~--~--~~~----~~-~~~~~~~~~T~  354 (472)
T 1ohv_A          295 FLVDEVQTGGGSTG---KFWAHEHW-GLDDPAD---VMTFSKKM-MTG---GFF--H--KEE----FR-PNAPYRIFNTW  354 (472)
T ss_dssp             EEEECTTTTTTTTS---SSSGGGGG-CCSSCCS---EEEECGGG-SSE---EEE--E--CGG----GS-CSSSSSSCCSS
T ss_pred             EEEeCcccCCCCCC---Cchhcccc-CCCCCCC---EEEEcccc-ccC---Ccc--C--chh----hc-ccccccccCcc
Confidence            99999998776542   11122111 111  23   24899995 345   665  2  444    21 11222222333


Q ss_pred             CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCCcccccCCcceeeecCCC-----HH
Q 012647          343 NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGLN-----KA  415 (459)
Q Consensus       343 ~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--g~~~~~~~~~~~~g~f~~~~l~-----~~  415 (459)
                      +.+.+++.++...|+.   .   .+  +...++++++++++.+.|+ ++  +.|..+..+.+.+.++ ++.+.     .+
T Consensus       355 ~~~~~~~aaa~aal~~---~---~~--~~~~~~~~~~~~~l~~~L~-~l~~~~~~~v~~~~~~g~~~-~~~~~~~~~~~~  424 (472)
T 1ohv_A          355 LGDPSKNLLLAEVINI---I---KR--EDLLSNAAHAGKVLLTGLL-DLQARYPQFISRVRGRGTFC-SFDTPDESIRNK  424 (472)
T ss_dssp             SSCHHHHHHHHHHHHH---H---HH--TTHHHHHHHHHHHHHHHHH-HHHHHCTTTCEEEEEETTEE-EEECSSHHHHHH
T ss_pred             CccHHHHHHHHHHHHH---H---Hh--CCHHHHHHHHHHHHHHHHH-HHHhhCCCcEEeecCCceEE-EEEeCChhHHHH
Confidence            4556666666544421   0   11  2456777788888888887 65  2221122244554444 43442     24


Q ss_pred             HHHHHHhcccEEEcCCC----cEEEcc-CChhhHHHHHHHHHHHHhhcC
Q 012647          416 QSDNMTNKWHVYMTKDG----RISLAG-LSLAKCEYLADAIIDSYHNVS  459 (459)
Q Consensus       416 ~~~~ll~~~gI~v~~gg----Ris~~~-~~~e~i~~~~~~l~~~~~~~~  459 (459)
                      +++.|++ +||.+.|+|    ||+++. .+++++++++++|.+++++++
T Consensus       425 ~~~~l~~-~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~~  472 (472)
T 1ohv_A          425 LISIARN-KGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILADFK  472 (472)
T ss_dssp             HHHHHHH-TTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHH-CCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcC
Confidence            5677776 599999875    886553 289999999999999998764

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.89  E-value=2e-21  Score=196.47  Aligned_cols=325  Identities=14%  Similarity=0.158  Sum_probs=189.2

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCC---cc---cHHHH----HHHHHHHhcCCCCccccCce-
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI---EG---LAAFN----KVTAELLFGADNSVLKEQRV-  152 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~---~g---~~~lr----~aia~~l~~~~~~~~~~~~i-  152 (459)
                      +.|+|..+..       ++++.|++++...+.+....+|+..   .|   ..+++    +.+++++...      .+++ 
T Consensus        55 ~~i~lias~n-------~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~------~~~~~  121 (490)
T 2a7v_A           55 RGLELIASEN-------FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLD------PAQWG  121 (490)
T ss_dssp             HSEECCTTCC-------CCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCC------TTTEE
T ss_pred             cCceEECCCC-------CCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCC------cccCc
Confidence            5677776542       2489999999988754332344321   12   23555    6666665432      3322 


Q ss_pred             EEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH--------HhhhCCCC--eeeeeeecCCCCCCCHHHHHHH
Q 012647          153 ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN--------IFNDARVP--WSEYRYYDPKTVGLDFEGMIAD  222 (459)
Q Consensus       153 ~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~--------~~~~~G~~--v~~v~~~~~~~~~~d~e~l~~~  222 (459)
                      ..+++++|++|+..+  +.+.+.|||+|+++++.|.++..        .+...|..  ++.++++ ++++.+|++++++.
T Consensus       122 ~~v~~~sGt~An~~a--l~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd-~~~~~iD~d~le~~  198 (490)
T 2a7v_A          122 VNVQPYSGSPANLAV--YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLN-PKTGLIDYNQLALT  198 (490)
T ss_dssp             EECCCSSHHHHHHHH--HHHHCCSCEECCC-------------------------------CCBC-TTTCSBCHHHHHHH
T ss_pred             eEEeCCchHHHHHHH--HHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccc-cccCCcCHHHHHHH
Confidence            222367889999988  55668899999999998865421        23345554  4444443 34688999999999


Q ss_pred             HHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEEc
Q 012647          223 IKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQS  301 (459)
Q Consensus       223 i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S  301 (459)
                      +++.  ++++++++.++||+  .   .++++|.++|++||+++++|+++. ++...+....  .+    .  ..++++.|
T Consensus       199 l~~~--~~klIi~~~s~~~~--~---~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~--~~----~--~aDiv~~S  263 (490)
T 2a7v_A          199 ARLF--RPRLIIAGTSAYAR--L---IDYARMREVCDEVKAHLLADMAHISGLVAAKVIPS--PF----K--HADIVTTT  263 (490)
T ss_dssp             HHHH--CCSEEEECCSSCCS--C---CCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCC--GG----G--TCSEEEEE
T ss_pred             Hhhc--CCcEEEEcCCCCCC--c---ccHHHHHHHHHHcCCEEEEccccccccccCCcCCC--CC----C--CCCEEEEC
Confidence            8742  45677778899985  3   358899999999999999999943 3322211111  11    1  23588899


Q ss_pred             CCcCcccCCCCcceEEEEeCCh--------------hHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHH
Q 012647          302 YSKNLGLYAERIGAMNVVCSSS--------------DLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA  367 (459)
Q Consensus       302 ~SK~~~~~G~RiG~~~~v~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~  367 (459)
                      +||.++  |+|.|++++  .+.              ++.+++......   ...++++.....+....+.     +.+.+
T Consensus       264 ~hK~l~--Gp~GG~i~~--~~~~~~~~~~~~~~~~~~l~~~i~~~~~~---g~qggp~~~~iaAla~Al~-----~~~~~  331 (490)
T 2a7v_A          264 THKTLR--GARSGLIFY--RKGVKAVDPKTGREIPYTFEDRINFAVFP---SLQGGPHNHAIAAVAVALK-----QACTP  331 (490)
T ss_dssp             SSGGGC--SCSCEEEEE--ECSEEEEETTTEEEEECCCHHHHHHHHTT---TTCCSCCHHHHHHHHHHHH-----HHHSH
T ss_pred             CcccCc--cccchheee--ccchhcccccccchhhHHHHHHHHHHhcc---cCCCCchHHHHHHHHHHHH-----HHhhh
Confidence            999874  677799855  222              233333333221   1112333322222222221     11112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC-CcceeeecC-----CCHHHHHHHHhcccEEEcC----C------
Q 012647          368 EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR-QIGMFSFTG-----LNKAQSDNMTNKWHVYMTK----D------  431 (459)
Q Consensus       368 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~-~~g~f~~~~-----l~~~~~~~ll~~~gI~v~~----g------  431 (459)
                      +.++..+++.+++++|.+.|. +.|    +++... ....++|+.     ++.+.+..+|++.||.+..    +      
T Consensus       332 ~~~~~~~~~~~na~~L~~~L~-~~G----~~v~~~~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~  406 (490)
T 2a7v_A          332 MFREYSLQVLKNARAMADALL-ERG----YSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAIT  406 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HTT----CEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHH-HcC----cEEecCCCCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCCCCCCC
Confidence            346777888899999999999 877    465542 234455653     4566777777888999863    2      


Q ss_pred             --C-cEEEc-----cCChhhHHHHHHHHHHHHh
Q 012647          432 --G-RISLA-----GLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       432 --g-Ris~~-----~~~~e~i~~~~~~l~~~~~  456 (459)
                        | ||+..     +.++++++++++.|.++++
T Consensus       407 ~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~  439 (490)
T 2a7v_A          407 PGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN  439 (490)
T ss_dssp             CSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCceEecccccccCCCCHHHHHHHHHHHHHHHH
Confidence              2 77542     2478999999999998875

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.88  E-value=2.5e-21  Score=193.57  Aligned_cols=252  Identities=16%  Similarity=0.078  Sum_probs=168.3

Q ss_pred             cHHHHHHHHHHhhc------CCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCC
Q 012647          103 LDVVKKAENLMLER------GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP  176 (459)
Q Consensus       103 ~~~v~~a~~~~~~~------~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~  176 (459)
                      .+.|++++.+....      ...+.| +..+..++++.+++++...    ....++++  + +|++|+..+  +.+.+.+
T Consensus        37 ~~~vl~A~~~~~~~~~~~~~~~g~~y-~~~~~~~l~~~la~~~g~~----~~~~~i~~--~-sGt~Ai~~a--l~al~~~  106 (431)
T 3ht4_A           37 QFRVLESFGKHKISDSHFIPTTGYGY-DDIGRDTLEKVYADVFGAE----AGLVRPQI--I-SGTHAISTA--LFGILRP  106 (431)
T ss_dssp             HHHHHHHHHHTTCCGGGSCCCCTTCC-SCHHHHHHHHHHHHHTTCS----EECCBTTS--C-SHHHHHHHH--HHTTCCT
T ss_pred             HHHHHHHHHHhchhhhhcCCCCCCCC-ChhhHHHHHHHHHHHhCCC----ccccccee--e-CHHHHHHHH--HHHhCCC
Confidence            45677777664311      111233 3344567777777775332    11223334  4 779999988  4445779


Q ss_pred             CCEEEEcC-CCCcchHHHh----------hhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeC-CCCCCCCC
Q 012647          177 GAKVLISS-PTWGNHKNIF----------NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG-CAHNPTGI  244 (459)
Q Consensus       177 gd~Vlv~~-p~y~~~~~~~----------~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~-~p~NPTG~  244 (459)
                      ||+|++++ |.|..+...+          +..|++++.+|.+  +++.+|++++++++++   ++++++++ +||||+|.
T Consensus       107 Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~--~~~~~d~e~l~~~l~~---~tk~V~i~~sp~np~~~  181 (431)
T 3ht4_A          107 GDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLT--EGGLVDFEAVAAAIHS---NTKMIGIQRSKGYATRP  181 (431)
T ss_dssp             TCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEECCBC--TTSSBCHHHHHHHCCT---TEEEEEEECSCTTSSSC
T ss_pred             CCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEEeCCC--CCCCcCHHHHHhhcCC---CCeEEEEECCCCCCCCC
Confidence            99999999 9999888655          4579999999984  3578999999999975   77777777 69999999


Q ss_pred             CCCHHHHHHHHHHHHh--cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc-CCCCcceEEEEeC
Q 012647          245 DPTPEQWEKIADVIQE--KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL-YAERIGAMNVVCS  321 (459)
Q Consensus       245 ~~s~~~l~~i~~l~~~--~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-~G~RiG~~~~v~~  321 (459)
                      .++.+++++|+++|++  +|+++|+|++|..+.++.   ...       ....+++++|+||.+|. .+..-||+++   
T Consensus       182 ~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~---~~~-------~~g~Di~~~S~sK~lgg~~~~~GG~v~~---  248 (431)
T 3ht4_A          182 SFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQ---EPC-------HVGADLMAGSLIKNPGGGIVKTGGYIVG---  248 (431)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSC---CGG-------GTTCSEEEEETTSGGGTTTCSSCEEEEE---
T ss_pred             cCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCC---Ccc-------ccCCeEEEcCccccCCCCCCCceEEEEe---
Confidence            9999999999999999  999999999999887532   111       11346899999999653 1122388866   


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  393 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  393 (459)
                      ++++++.+.............+++...+.++...          .+.+....++..++++++.+.|+ ++|+
T Consensus       249 ~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~----------l~~~~~~~~~~~~~a~~l~~~L~-~~g~  309 (431)
T 3ht4_A          249 KEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQG----------FFLAPHVAGQALKGAIFTAAFLE-KLGM  309 (431)
T ss_dssp             CHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH-HHTC
T ss_pred             cHHHHHHHHHHhccCCcccccCccHHHHHHHHhH----------hhhHHHHHHHHHHHHHHHHHHHH-hCcC
Confidence            7886666554332211111111211111222111          12245667778888899999999 8873

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.88  E-value=3.2e-21  Score=191.32  Aligned_cols=215  Identities=16%  Similarity=0.101  Sum_probs=152.8

Q ss_pred             CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh-----hhCC
Q 012647          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-----NDAR  198 (459)
Q Consensus       124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~-----~~~G  198 (459)
                      +.....+|++.++++...        ++.++  +++|++|+..+   +..+.+||+|++++|+|......+     +..|
T Consensus        65 ~~p~~~~l~~~la~l~g~--------~~~~~--~~sG~~Ai~~~---~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g  131 (400)
T 3nmy_A           65 HNPTRFAYERCVAALEGG--------TRAFA--FASGMAATSTV---MELLDAGSHVVAMDDLYGGTFRLFERVRRRTAG  131 (400)
T ss_dssp             CCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH---HTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHC
T ss_pred             CCHHHHHHHHHHHHHhCC--------CCEEE--ecCHHHHHHHH---HHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcC
Confidence            455667899999998643        24555  67779999874   445679999999999998555443     3459


Q ss_pred             CCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCC
Q 012647          199 VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGS  278 (459)
Q Consensus       199 ~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~  278 (459)
                      ++++.++..       |++.+++++++   +++++++++|+||||.+++   +++|+++|++||+++|+|++|.......
T Consensus       132 ~~~~~v~~~-------d~~~l~~~i~~---~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~  198 (400)
T 3nmy_A          132 LDFSFVDLT-------DPAAFKAAIRA---DTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQR  198 (400)
T ss_dssp             CEEEEECTT-------SHHHHHHHCCT---TEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC
T ss_pred             eEEEEECCC-------CHHHHHHHhcc---CCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccCC
Confidence            998888762       78999999875   7889999999999999974   8889999999999999999986432210


Q ss_pred             CCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcce-EEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhC
Q 012647          279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA-MNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVG  357 (459)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  357 (459)
                            .+     ..+.++++.|+||.++.+|.++|+ ++ ++.+++..+.+.....    ......+...+.++...++
T Consensus       199 ------~~-----~~g~div~~S~sK~l~g~g~~~gG~~v-v~~~~~~~~~l~~~~~----~~g~~~~~~~a~~~l~~l~  262 (400)
T 3nmy_A          199 ------PL-----SLGADLVVHSATKYLNGHSDMVGGIAV-VGDNAELAEQMAFLQN----SIGGVQGPFDSFLALRGLK  262 (400)
T ss_dssp             ------GG-----GGTCSEEEEETTTTTTCSSSCCCEEEE-ECSCHHHHHHHHHHHH----HHCCBCCHHHHHHHHHHHT
T ss_pred             ------hh-----hcCCcEEEecCccccCCCCCcceeEEE-EeCCHHHHHHHHHHHH----hcCCCCCHHHHHHHHHhHh
Confidence                  11     123568999999999989999988 43 4677775555544322    2222344444444444443


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          358 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                      .          +....++..++.+.+.+.|+ +.
T Consensus       263 ~----------l~~r~~~~~~~a~~l~~~L~-~~  285 (400)
T 3nmy_A          263 T----------LPLRMRAHCENALALAQWLE-TH  285 (400)
T ss_dssp             T----------HHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             H----------HHHHHHHHHHHHHHHHHHHH-cC
Confidence            2          34455666777778888887 65

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.88  E-value=2e-21  Score=197.75  Aligned_cols=328  Identities=9%  Similarity=-0.036  Sum_probs=216.0

Q ss_pred             cHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCcccc--------CceEEeecccchhHHHHHHHHHHH-
Q 012647          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE--------QRVATVQGLSGTGSLRLAAALIER-  173 (459)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~--------~~i~~~~t~ggt~a~~l~~~~~~~-  173 (459)
                      +..+.+.+...+..+ ...|....+..++++.+++++....|.+...        ...++  |+|||+++.++...... 
T Consensus        92 ~~~~~~~~~~~~n~~-~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~--~~ggt~an~~al~~ar~~  168 (481)
T 4e1o_A           92 PSLLGDMLADAINCL-GFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVL--QSTVSESTLIALLAARKN  168 (481)
T ss_dssp             HHHHHHHHHHHHCCC-CSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEE--ESCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcc-cCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEE--eCchHHHHHHHHHHHHHH
Confidence            455556666666554 3778888899999999999887766664322        25567  89999999887443321 


Q ss_pred             ----------------hCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCCcEEEE
Q 012647          174 ----------------YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILL  234 (459)
Q Consensus       174 ----------------~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~ii  234 (459)
                                      ..+++.|++++++|..+...++..|++++.+|+  ++++.+|+++|+++|++.   ...+++++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~--~~~~~~d~~~Le~~i~~~~~~g~~~~~vv  246 (481)
T 4e1o_A          169 KILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPV--DDNFSLRGEALQKAIEEDKQRGLVPVFVC  246 (481)
T ss_dssp             HHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECC--CTTSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEc--CCCCcCCHHHHHHHHHHHHhCCCCcEEEE
Confidence                            125789999999999999998889999999998  457899999999999762   11267778


Q ss_pred             eCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEEcCCcCcccCCCCc
Q 012647          235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAERI  313 (459)
Q Consensus       235 ~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~Ri  313 (459)
                      .+.++|+||.+   +++++|+++|++||+++++|++|.......   +  ..+.... ....+.++.+++|.++.| ..+
T Consensus       247 ~~~~~t~~G~i---d~l~~I~~la~~~~~~lhvDaA~g~~~~~~---~--~~~~~~~gi~~aDsi~~~~hK~l~~p-~g~  317 (481)
T 4e1o_A          247 ATLGTTGVCAF---DCLSELGPICAREGLWLHIDAAYAGTAFLC---P--EFRGFLKGIEYADSFTFNPSKWMMVH-FDC  317 (481)
T ss_dssp             EEBSCTTTCCB---CCHHHHHHHHHHHTCEEEEECTTGGGGGGS---G--GGGGGGTTGGGCSEEEECHHHHSSCC-SSC
T ss_pred             EecCCCCCcCc---CCHHHHHHHHHHcCCeEEeehhhHHHHHhC---h--hhHHHhcCcccCCEEEEChHHhcCCC-Cce
Confidence            88899999998   889999999999999999999987754211   0  1111111 111256678999988755 347


Q ss_pred             ceEEEEeCChhHHHHHHHHHHhhcccc--------------cc-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012647          314 GAMNVVCSSSDLAARVKSQLKRLARPM--------------YS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  378 (459)
Q Consensus       314 G~~~~v~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  378 (459)
                      |+++  ++++............+....              .+ ....+.+.++...+.        .+.++++.++..+
T Consensus       318 g~l~--~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g--------~~g~~~~~~~~~~  387 (481)
T 4e1o_A          318 TGFW--VKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFG--------VKNLQAHVRHGTE  387 (481)
T ss_dssp             EEEE--ESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred             EEEE--EeCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhH--------HHHHHHHHHHHHH
Confidence            8774  455542211000000000000              00 012333333333331        2346788889999


Q ss_pred             HHHHHHHHHhhccCCCCCcccccCC-cceeeec--CC---CHHHHHHHHhcccEEEcCC---C----cEEEccC--Chhh
Q 012647          379 VRQKLFDSLSAKDKSGKDWSFILRQ-IGMFSFT--GL---NKAQSDNMTNKWHVYMTKD---G----RISLAGL--SLAK  443 (459)
Q Consensus       379 ~~~~l~~~L~~~~g~~~~~~~~~~~-~g~f~~~--~l---~~~~~~~ll~~~gI~v~~g---g----Ris~~~~--~~e~  443 (459)
                      +++++.+.|+ +++   ++++..+. .++++|.  +.   +.++.+++.++..+.+.++   |    |+++++.  ++++
T Consensus       388 ~a~~l~~~L~-~~~---g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~d  463 (481)
T 4e1o_A          388 MAKYFESLVR-NDP---SFEIPAKRHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDD  463 (481)
T ss_dssp             HHHHHHHHHH-TCT---TEECCSCCCSSEEEEEESSCHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHH
T ss_pred             HHHHHHHHHh-cCC---CeEEecCCceeEEEEEeCCchHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHH
Confidence            9999999999 762   15665443 3333331  22   2345667777633444442   3    9997653  6799


Q ss_pred             HHHHHHHHHHHHhhc
Q 012647          444 CEYLADAIIDSYHNV  458 (459)
Q Consensus       444 i~~~~~~l~~~~~~~  458 (459)
                      |++++++|+++.+++
T Consensus       464 i~~~~~~i~~~~~~l  478 (481)
T 4e1o_A          464 ILRDWNLIRDAATLI  478 (481)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988763

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.88  E-value=6.3e-21  Score=195.82  Aligned_cols=309  Identities=14%  Similarity=0.054  Sum_probs=195.9

Q ss_pred             CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH-----hC-CCC------EEEEcCCCC
Q 012647          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-----YF-PGA------KVLISSPTW  187 (459)
Q Consensus       120 ~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~-----~~-~gd------~Vlv~~p~y  187 (459)
                      ..|....+..++.+.+.+++....|.+  ++++++  |+|||+|+.++......     +. +||      +|+++.++|
T Consensus       138 ~~~~~s~~~~~le~~~~~~la~l~g~~--~~~~~~--t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h  213 (515)
T 2jis_A          138 YTYEIAPVFVLMEEEVLRKLRALVGWS--SGDGIF--CPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECH  213 (515)
T ss_dssp             TCTTTCHHHHHHHHHHHHHHHHHHTCS--SCEEEE--ESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSC
T ss_pred             CchhhchHHHHHHHHHHHHHHHHhCCC--CCCeEE--cCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCcc
Confidence            456555565444444333333322332  578888  99999998887544321     12 576      899999999


Q ss_pred             cchHHHhhhCCC---CeeeeeeecCCCCCCCHHHHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc
Q 012647          188 GNHKNIFNDARV---PWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK  261 (459)
Q Consensus       188 ~~~~~~~~~~G~---~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~  261 (459)
                      ..+...++..|.   +++.+|++  +++.+|+++|++++++.   ..+++++++++|+||||.+   +++++|+++|++|
T Consensus       214 ~s~~~~~~~~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i---~~l~~I~~la~~~  288 (515)
T 2jis_A          214 YSIQKGAAFLGLGTDSVRVVKAD--ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAF---DPLEAIADVCQRH  288 (515)
T ss_dssp             THHHHHHHHTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCB---CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCcEEEEecC--CCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCc---cCHHHHHHHHHHc
Confidence            999999988888   89999983  46889999999999751   2247888889999999999   6788999999999


Q ss_pred             CCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEEcCCcCcccCCCCcceEEEEeCCh-hHHHHHH----HHHHh
Q 012647          262 NHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIGAMNVVCSSS-DLAARVK----SQLKR  335 (459)
Q Consensus       262 ~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~-~~~~~~~----~~~~~  335 (459)
                      |+++++|++|..+....   +...  ..+.. ...++++.|++|.++.| .++|++++  +++ +..+...    ..+..
T Consensus       289 g~~l~vD~a~~~~~~~~---~~~~--~~~~g~~~aD~v~~s~hK~l~~p-~g~G~l~~--~~~~~~~~~~~~~~~~yl~~  360 (515)
T 2jis_A          289 GLWLHVDAAWGGSVLLS---QTHR--HLLDGIQRADSVAWNPHKLLAAG-LQCSALLL--QDTSNLLKRCHGSQASYLFQ  360 (515)
T ss_dssp             TCEEEEEETTGGGGGGC---TTTG--GGGTTGGGCSEEEECTTSTTCCC-SCCEEEEE--SCCSCHHHHHHCC-------
T ss_pred             CCeEEEehhhhhHHHhC---hhhH--hhcCCCccCCEEEECcccccCCC-CCeeEEEE--eChHHHHHHHhcCCchhccC
Confidence            99999999988776431   1100  11111 13457888999998733 56899954  444 3333211    11100


Q ss_pred             hcc-------cc-c----c-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc-
Q 012647          336 LAR-------PM-Y----S-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL-  401 (459)
Q Consensus       336 ~~~-------~~-~----~-~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-  401 (459)
                      ...       .. +    + ....+.+.++...+.        .+.++++.++..++++++.+.|+ +++   +++++. 
T Consensus       361 ~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg--------~~g~~~~~~~~~~~a~~l~~~L~-~~~---g~~~~~~  428 (515)
T 2jis_A          361 QDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG--------DQGLERRIDQAFVLARYLVEEMK-KRE---GFELVME  428 (515)
T ss_dssp             --CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH-TST---TEEESSC
T ss_pred             CcccccccCCCCCCCCCCCCcccHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHHh-cCC---CEEEeCC
Confidence            000       00 0    0 011223333332222        23467788889999999999999 762   155553 


Q ss_pred             CCcceeeecCC---------CHH-----------HHHHHHhcccEEE-c----CC--C--cEEEc-cC-ChhhHHHHHHH
Q 012647          402 RQIGMFSFTGL---------NKA-----------QSDNMTNKWHVYM-T----KD--G--RISLA-GL-SLAKCEYLADA  450 (459)
Q Consensus       402 ~~~g~f~~~~l---------~~~-----------~~~~ll~~~gI~v-~----~g--g--Ris~~-~~-~~e~i~~~~~~  450 (459)
                      +..+.++|...         +.+           ..+.+.++ |+.. .    ++  +  ||+++ .. +++++++++++
T Consensus       429 ~~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~-G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~  507 (515)
T 2jis_A          429 PEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKE-GSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNE  507 (515)
T ss_dssp             CSSSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHH-TSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHH
T ss_pred             CCeeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHH
Confidence            34455555211         111           33455554 7543 2    23  2  99994 22 88999999999


Q ss_pred             HHHHHhhc
Q 012647          451 IIDSYHNV  458 (459)
Q Consensus       451 l~~~~~~~  458 (459)
                      |+++++++
T Consensus       508 l~~~~~~~  515 (515)
T 2jis_A          508 LERLGQDL  515 (515)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHhhC
Confidence            99988764

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.88  E-value=6.9e-21  Score=190.54  Aligned_cols=164  Identities=20%  Similarity=0.094  Sum_probs=127.8

Q ss_pred             CCCCC--CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh---
Q 012647          120 KEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF---  194 (459)
Q Consensus       120 ~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~---  194 (459)
                      +.|..  .....++++++++++...       +.+++   .+|+++++++.+  ..+.+||+|+++.|+|..+...+   
T Consensus        50 ~~y~~~~~~~~~~l~~~la~~~g~~-------~~v~~---~sGt~A~~~~l~--~~~~~gd~vi~~~~~~~~~~~~~~~~  117 (421)
T 2ctz_A           50 NIYSRIMNPTVDVLEKRLAALEGGK-------AALAT---ASGHAAQFLALT--TLAQAGDNIVSTPNLYGGTFNQFKVT  117 (421)
T ss_dssp             GSCBTTBCHHHHHHHHHHHHHHTCS-------EEEEE---SSHHHHHHHHHH--HHCCTTCEEEECSCCCHHHHHHHHTH
T ss_pred             CcccCCCChHHHHHHHHHHHHhCCC-------ceEEe---cCHHHHHHHHHH--HHhCCCCEEEEeCCCchHHHHHHHHH
Confidence            44543  334689999999997542       33444   556999999843  33779999999999998876665   


Q ss_pred             -hhCCCCeeee-eeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC
Q 012647          195 -NDARVPWSEY-RYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ  272 (459)
Q Consensus       195 -~~~G~~v~~v-~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~  272 (459)
                       +..|++++.+ +.+       |++++++++++   +++++++++|+||||.+++   +++|+++|++||+++|+|++|.
T Consensus       118 ~~~~g~~~~~~~~~~-------d~~~l~~~i~~---~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~  184 (421)
T 2ctz_A          118 LKRLGIEVRFTSREE-------RPEEFLALTDE---KTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFG  184 (421)
T ss_dssp             HHHTTCEEEECCTTC-------CHHHHHHHCCT---TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGG
T ss_pred             HHHcCCEEEEECCCC-------CHHHHHHhhcc---CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcc
Confidence             6789999888 652       78999999875   7889999999999999966   8889999999999999999983


Q ss_pred             CCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012647          273 GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (459)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (459)
                      .+++..   ...      . ...++++.|+||.++.+|.|+|++++
T Consensus       185 ~~g~~~---~~~------~-~~~Di~~~s~~K~l~~~g~~~G~~~~  220 (421)
T 2ctz_A          185 MGGYLL---RPL------A-WGAALVTHSLTKWVGGHGAVIAGAIV  220 (421)
T ss_dssp             GGGTSC---CGG------G-GTCSEEEEETTTTTTCSSCCCCEEEE
T ss_pred             cccccC---Ccc------c-cCCeEEEECCcccccCCCCcEEEEEE
Confidence            444321   111      1 13568899999999999999999965

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.88  E-value=2.2e-21  Score=196.96  Aligned_cols=327  Identities=11%  Similarity=-0.005  Sum_probs=211.8

Q ss_pred             cHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCcccc-------CceEEeecccchhHHHHHHHHHHHh-
Q 012647          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-------QRVATVQGLSGTGSLRLAAALIERY-  174 (459)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~-------~~i~~~~t~ggt~a~~l~~~~~~~~-  174 (459)
                      +..+.+.+...+..+ ...|....+..++++.+++++....|.+...       ...++  |+|||+++.++....... 
T Consensus        87 ~~~~~~~l~~~~n~~-~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~--t~ggt~anl~al~~ar~~~  163 (475)
T 3k40_A           87 PAIVADMLSGAIACI-GFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVI--QGTASESTLVALLGAKAKK  163 (475)
T ss_dssp             HHHHHHHHHHHHCCC-SSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEE--ESCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcc-ccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEE--cCchHHHHHHHHHHHHHHH
Confidence            344555566666543 3668788888999999999887777764321       25677  899999988874333211 


Q ss_pred             ----------------CCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCCcEEEEe
Q 012647          175 ----------------FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLH  235 (459)
Q Consensus       175 ----------------~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~ii~  235 (459)
                                      .+++.|+++.++|..+...++..|++++.+|++  +++ +|+++|+++|++.   ...+++++.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d--~~~-~d~~~L~~~i~~~~~~~~~~~~v~~  240 (475)
T 3k40_A          164 LKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSE--NHR-MRGAALEKAIEQDVAEGLIPFYAVV  240 (475)
T ss_dssp             HHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECCB--TTB-CCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHcCCceEEEECC--CCC-cCHHHHHHHHHHHHHCCCccEEEEE
Confidence                            135789999999999999999999999999984  456 9999999999762   112567778


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEEcCCcCcccCCCCcc
Q 012647          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAERIG  314 (459)
Q Consensus       236 ~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~RiG  314 (459)
                      +.++|+||.+   +++++|+++|++||+++++|++|.......   +  ..+.... ....+.++.+++|.++.| ..+|
T Consensus       241 ~~~~t~~G~~---~~l~~I~~la~~~~~~lhvD~A~~~~~~~~---~--~~~~~~~gi~~~Ds~~~~~hK~l~~p-~g~g  311 (475)
T 3k40_A          241 TLGTTNSCAF---DYLDECGPVGNKHNLWIHVDAAYAGSAFIC---P--EYRHLMKGIESADSFNFNPHKWMLVN-FDCS  311 (475)
T ss_dssp             EBSCTTTCCB---CCHHHHHHHHHHTTCEEEEECTTGGGGGGS---G--GGGGGGTTGGGCSEEEECHHHHSSCC-SSCE
T ss_pred             EecCCCCcCc---CCHHHHHHHHHHhCCeEEEeHHhHHHHHhC---H--hhHHHhcCcccCCEEEECchhccCCC-CceE
Confidence            8899999999   889999999999999999999987643211   0  1111111 112357778999977633 4478


Q ss_pred             eEEEEeCChhHHHHHHHHHHhhcccc----------c---cC--CchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012647          315 AMNVVCSSSDLAARVKSQLKRLARPM----------Y---SN--PPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV  379 (459)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~~~~~----------~---~~--~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~  379 (459)
                      +++  +++++...........+....          +   .+  ...+.+.++...+.        .+.++++.++..++
T Consensus       312 ~l~--~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g--------~~g~~~~~~~~~~~  381 (475)
T 3k40_A          312 AMW--LKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYG--------VENLQAHIRRHCNF  381 (475)
T ss_dssp             EEE--ESSGGGC---------------------------CCCGGGTHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred             EEE--EeCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHh--------HHHHHHHHHHHHHH
Confidence            884  455543211111000000000          0   00  01222233322221        24467888899999


Q ss_pred             HHHHHHHHhhccCCCCCcccccC-Ccceeeec--CC---CHHHHHHHHhcccEEEcCC---C----cEEEccC--ChhhH
Q 012647          380 RQKLFDSLSAKDKSGKDWSFILR-QIGMFSFT--GL---NKAQSDNMTNKWHVYMTKD---G----RISLAGL--SLAKC  444 (459)
Q Consensus       380 ~~~l~~~L~~~~g~~~~~~~~~~-~~g~f~~~--~l---~~~~~~~ll~~~gI~v~~g---g----Ris~~~~--~~e~i  444 (459)
                      ++++.+.|+ +++   ++++..+ ..++++|.  +.   +.++.++|.++.++.+.++   |    |+++++.  ++++|
T Consensus       382 a~~l~~~L~-~~~---g~~l~~~~~~~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di  457 (475)
T 3k40_A          382 AKQFGDLCV-ADS---RFELAAEINMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDM  457 (475)
T ss_dssp             HHHHHHHHH-HST---TEEESSCCBTTEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHH
T ss_pred             HHHHHHHHh-cCC---CEEEecCCceEEEEEEeCCchHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHH
Confidence            999999999 762   1566544 33443331  32   2355677777644444432   3    9998753  78999


Q ss_pred             HHHHHHHHHHHhhc
Q 012647          445 EYLADAIIDSYHNV  458 (459)
Q Consensus       445 ~~~~~~l~~~~~~~  458 (459)
                      ++++++|+++.+++
T Consensus       458 ~~~~~~i~~~~~~~  471 (475)
T 3k40_A          458 EYSWKEVSAAADEM  471 (475)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988764

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.87  E-value=4.7e-21  Score=192.84  Aligned_cols=277  Identities=10%  Similarity=0.007  Sum_probs=175.0

Q ss_pred             cHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh----hhCCCCeee
Q 012647          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVPWSE  203 (459)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~G~~v~~  203 (459)
                      ..++++.++++++..      ++++++  +.|+|.+.+.+...+ .+.+||+|++++|+|+.+...+    +..|++++.
T Consensus       110 ~~~~~~~la~~~g~~------~~~i~~--~~g~taa~ea~~~a~-~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~  180 (438)
T 1wyu_A          110 TFEYQTMIAELAGLE------IANASM--YDGATALAEGVLLAL-RETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLT  180 (438)
T ss_dssp             HHHHHHHHHHHHTSS------EECSCB--SSHHHHHHHHHHHHH-HHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHhCCC------ccceEE--eCcHHHHHHHHHHHH-hcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEE
Confidence            457777778776432      567777  899994444442122 3568999999999999887665    448999999


Q ss_pred             eeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCCh
Q 012647          204 YRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA  283 (459)
Q Consensus       204 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~  283 (459)
                      +|.  + ++.+|+++    +++   +++++++++| ||||.+.   ++++|+++|+++|+++++|..-+.++...    .
T Consensus       181 v~~--~-~~~~d~~~----i~~---~t~~v~i~~p-n~tG~~~---~l~~i~~la~~~g~~vivd~d~~a~g~~~----~  242 (438)
T 1wyu_A          181 LPL--E-GGRTPLPE----VGE---EVGAVVVQNP-NFLGALE---DLGPFAEAAHGAGALFVAVADPLSLGVLK----P  242 (438)
T ss_dssp             ECC--B-TTBCCCCC----CCT---TEEEEEEESS-CTTSBCC---CHHHHHHHHHHTTCEEEEECCTTGGGTBC----C
T ss_pred             EcC--c-CCccCHHH----hCC---CeEEEEEECC-CCCeEEe---cHHHHHHHHHHcCCEEEEEechhhccCcC----C
Confidence            987  2 35788776    443   7888888999 9999994   78899999999999999663312222110    1


Q ss_pred             hHHHHHHhcCCeEEEEEcCCcCc----ccCCCCcceEEEEeCChhHHHHHHHH------------------------HHh
Q 012647          284 SSVRLFATRGMELLVAQSYSKNL----GLYAERIGAMNVVCSSSDLAARVKSQ------------------------LKR  335 (459)
Q Consensus       284 ~~~~~~~~~~~~~i~~~S~SK~~----~~~G~RiG~~~~v~~~~~~~~~~~~~------------------------~~~  335 (459)
                       . ..   . +.++++.| +|.|    ++.|.|+||+++   +++..+.+...                        .+.
T Consensus       243 -~-~~---~-g~D~~~~s-~kk~~~~~~~~Gp~~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~  312 (438)
T 1wyu_A          243 -P-GA---Y-GADIAVGD-GQSLGLPMGFGGPHFGFLAT---KKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRR  312 (438)
T ss_dssp             -H-HH---H-TCSEEEEE-CTTTTCCCGGGCSCCEEEEE---CGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHG
T ss_pred             -C-cc---C-CCCEEEEC-CcccCCCccCCCCCeeEEEE---cHHHHHhCCCceeccccccCCCcceeeeccccccccch
Confidence             1 11   1 23355556 5554    456779999976   66643332100                        000


Q ss_pred             hccccccCC---chHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCcccccCCcceee---
Q 012647          336 LARPMYSNP---PVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFILRQIGMFS---  408 (459)
Q Consensus       336 ~~~~~~~~~---~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~g~f~---  408 (459)
                      . .. +.+.   ..+++..+...+.   +..  .+.++++.+++.++++++.+.|+ ++ |    +++..+. .+|.   
T Consensus       313 ~-~~-t~~~~~~~~~~a~~aa~~l~---~~~--~~g~~~~~~~~~~~~~~l~~~L~-~~~g----~~~~~~~-~~~~~~~  379 (438)
T 1wyu_A          313 A-KA-KSNITTNAQLTALMGAMYLA---ALG--PEGLREVALKSVEMAHKLHALLL-EVPG----VRPFTPK-PFFNEFA  379 (438)
T ss_dssp             G-GS-SCCCCSCCHHHHHHHHHHHH---HHH--HHHHHHHHHHHHHHHHHHHHHHT-TSTT----CEECSCS-SBCSEEE
T ss_pred             h-cc-cCCccchHHHHHHHHHHHHH---HhC--HHHHHHHHHHHHHHHHHHHHHHh-cCCC----eEECCCC-CeEEEEE
Confidence            0 11 1122   2222222221111   000  23467888999999999999999 87 5    5655543 3332   


Q ss_pred             e-cCCCH-HHHHHHHhcccEEE--cCC-----C--cEEEccC-ChhhHHHHHHHHHHHH
Q 012647          409 F-TGLNK-AQSDNMTNKWHVYM--TKD-----G--RISLAGL-SLAKCEYLADAIIDSY  455 (459)
Q Consensus       409 ~-~~l~~-~~~~~ll~~~gI~v--~~g-----g--Ris~~~~-~~e~i~~~~~~l~~~~  455 (459)
                      + .+.+. ++.++|.+ +||.+  .++     +  |||++.. +++++++++++|++++
T Consensus       380 ~~~~~~~~~~~~~L~~-~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l  437 (438)
T 1wyu_A          380 LALPKDPEAVRRALAE-RGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL  437 (438)
T ss_dssp             EECSSCHHHHHHHHHH-TTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             EeCCCCHHHHHHHHHH-CCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence            1 13343 55667766 59998  443     3  9998843 7899999999998764

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.87  E-value=2.2e-20  Score=185.03  Aligned_cols=300  Identities=13%  Similarity=0.093  Sum_probs=192.2

Q ss_pred             ccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH------
Q 012647          100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER------  173 (459)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~------  173 (459)
                      +.+++.+.+++.+.+...   .|.+..+..++|+++++++..        +++++  +++|+++++++  +...      
T Consensus        11 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~~i~--~~sGt~a~~~a--l~~~~~~~~~   75 (390)
T 3b8x_A           11 STWDDLEYKAIQSVLDSK---MFTMGEYVKQYETQFAKTFGS--------KYAVM--VSSGSTANLLM--IAALFFTKKP   75 (390)
T ss_dssp             CCCCHHHHHHHHHHHHHT---CCSSCHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHTTSSSSC
T ss_pred             CCCCHHHHHHHHHHHHcC---CCCCChHHHHHHHHHHHHHCC--------CcEEE--ECCHHHHHHHH--HHHHHhhhhc
Confidence            445889999999888652   466788899999999999753        24556  78888999988  3333      


Q ss_pred             -hCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHH
Q 012647          174 -YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWE  252 (459)
Q Consensus       174 -~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~  252 (459)
                       +.+||+|+++.|+|..+...++..|++++.+|+++ +++.+|++.+++++++   ++++++++   |++|..   .+++
T Consensus        76 ~~~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~---~~~~v~~~---~~~g~~---~~~~  145 (390)
T 3b8x_A           76 RLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDI-NTLNIDIESLKEAVTD---STKAILTV---NLLGNP---NNFD  145 (390)
T ss_dssp             SCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCT-TTCSBCHHHHHHHCCT---TEEEEEEE---CGGGCC---CCHH
T ss_pred             CCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCc-cccCcCHHHHHHHhCc---CCeEEEEE---CCccCh---hhHH
Confidence             56899999999999999999999999999999853 3588999999999975   67777765   355655   7889


Q ss_pred             HHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEc--CCcCcccCCCCcceEEEEeCChhHHHHHH
Q 012647          253 KIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS--YSKNLGLYAERIGAMNVVCSSSDLAARVK  330 (459)
Q Consensus       253 ~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S--~SK~~~~~G~RiG~~~~v~~~~~~~~~~~  330 (459)
                      +|.++|++||+++|+|++|......+  ....      ... .++.+.|  .+|.++ +|. .|+++  +.++++.+++.
T Consensus       146 ~i~~l~~~~~~~li~D~a~~~g~~~~--~~~~------g~~-~~~~~~s~~~~k~~~-~g~-gG~~~--~~~~~l~~~~~  212 (390)
T 3b8x_A          146 EINKIIGGRDIILLEDNCESMGATFN--NKCA------GTF-GLMGTFSSFYSNHIA-TME-GGCIV--TDDEEIYHILL  212 (390)
T ss_dssp             HHHHHHTTSCCEEEEECTTCTTCEET--TEET------TSS-SSEEEEECCTTSSSC-SSS-CEEEE--ESCHHHHHHHH
T ss_pred             HHHHHHHHcCCEEEEECcCcccCEEC--Cccc------ccc-cceEEEEccCCCCCc-cCC-ceEEE--eCCHHHHHHHH
Confidence            99999999999999999977332111  1110      111 1222222  345554 343 37774  44445444433


Q ss_pred             HHHHhhc-c--------------------------ccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012647          331 SQLKRLA-R--------------------------PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKL  383 (459)
Q Consensus       331 ~~~~~~~-~--------------------------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l  383 (459)
                      ....... +                          +.....+.+.+.++...|          +.+++..++.+++++++
T Consensus       213 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l----------~~l~~~~~~~~~~~~~l  282 (390)
T 3b8x_A          213 CIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL----------KKLPRFISVRRKNAEYF  282 (390)
T ss_dssp             HHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence            2211100 0                          000013334333332222          23567778888889999


Q ss_pred             HHHHhhccCCCCCcccccC--Cccee-ee---c---CCCHHHHHHHHhcccEEEcC---C--------------------
Q 012647          384 FDSLSAKDKSGKDWSFILR--QIGMF-SF---T---GLNKAQSDNMTNKWHVYMTK---D--------------------  431 (459)
Q Consensus       384 ~~~L~~~~g~~~~~~~~~~--~~g~f-~~---~---~l~~~~~~~ll~~~gI~v~~---g--------------------  431 (459)
                      .+.|+ +++   ++++..+  ..+++ ++   .   +.+.+.+...|+++||.+.+   +                    
T Consensus       283 ~~~L~-~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (390)
T 3b8x_A          283 LDKFK-DHP---YLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNV  358 (390)
T ss_dssp             HHHHT-TCS---SEEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCC
T ss_pred             HHHhc-CCC---CcccCCCCCCcccEEEEEEecCcCcccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCC
Confidence            99998 762   1444332  23332 22   2   24555544444456997764   1                    


Q ss_pred             --------C--cEEEcc-CChhhHHHHHHHH
Q 012647          432 --------G--RISLAG-LSLAKCEYLADAI  451 (459)
Q Consensus       432 --------g--Ris~~~-~~~e~i~~~~~~l  451 (459)
                              +  ||++.. ++++|+++++++|
T Consensus       359 ~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l  389 (390)
T 3b8x_A          359 DNAEYLDKNGLFVGNHQIELFDEIDYLREVL  389 (390)
T ss_dssp             HHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred             hHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence                    0  566554 3889999998876

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.85  E-value=4e-20  Score=194.97  Aligned_cols=177  Identities=11%  Similarity=-0.036  Sum_probs=125.8

Q ss_pred             CCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH-hhhCCCCe
Q 012647          123 LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI-FNDARVPW  201 (459)
Q Consensus       123 ~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~-~~~~G~~v  201 (459)
                      .+..-..++++.+|++++..       ..+++  ++|+++++.++  +.+.+.+||+|+++.|+|..+... ++..|+++
T Consensus       170 ~~~~~i~e~e~~lA~~~gae-------~~i~v--~nGtt~an~~a--i~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~  238 (730)
T 1c4k_A          170 IHEGPAVAAEKHAARVYNAD-------KTYFV--LGGSSNANNTV--TSALVSNGDLVLFDRNNHKSVYNSALAMAGGRP  238 (730)
T ss_dssp             TTBTHHHHHHHHHHHHTTCS-------EEEEE--SSHHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEE
T ss_pred             CChHHHHHHHHHHHHHHCCC-------cEEEE--CCHHHHHHHHH--HHHhcCCCCEEEEcCCchHHHHHHHHHHCCCEE
Confidence            34455689999999996542       34666  88888999998  555578999999999999988777 88899999


Q ss_pred             eeeeeecCCCCC----CCHHHH-----HHHHHcCCCC---c----EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 012647          202 SEYRYYDPKTVG----LDFEGM-----IADIKAAPGG---S----FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP  265 (459)
Q Consensus       202 ~~v~~~~~~~~~----~d~e~l-----~~~i~~~~~~---~----~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~i  265 (459)
                      +.++...+ .++    +|++.+     ++++++.++.   +    +++++++| ||||.+   .++++|+++|++||+++
T Consensus       239 v~v~~~~~-~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v---~dl~~I~~la~~~g~~l  313 (730)
T 1c4k_A          239 VYLQTNRN-PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTI---YNAHEVVKRIGHLCDYI  313 (730)
T ss_dssp             EEECEEEC-TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEE---ECHHHHHHHHGGGBSEE
T ss_pred             EEEeCCcc-ccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCee---cCHHHHHHHHHHcCCeE
Confidence            99887532 333    789988     8888753101   3    67777888 699999   56889999999999999


Q ss_pred             EEeccCCCC-CCCCCCCChhHHHH--HHhcCCeEEEEEcCCcCcccCCCCcceEE
Q 012647          266 FFDVAYQGF-ASGSLDNDASSVRL--FATRGMELLVAQSYSKNLGLYAERIGAMN  317 (459)
Q Consensus       266 i~Deay~~~-~~~~~~~~~~~~~~--~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (459)
                      ++|++|... .+++.......+..  +..+.++++++.|+||.+  +|.+.|+++
T Consensus       314 ivDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L--~g~~~gg~I  366 (730)
T 1c4k_A          314 EFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ--AGFSQTSQI  366 (730)
T ss_dssp             EEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHS--SCCTTCEEE
T ss_pred             EEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCC--CCCCCEEEE
Confidence            999998643 33210000001100  001234679999999985  566666654

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.84  E-value=2.8e-20  Score=182.77  Aligned_cols=317  Identities=12%  Similarity=0.003  Sum_probs=193.1

Q ss_pred             cCCCCCCccCcHHHHHHHHHHhhcCCC--------CCCC--CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           93 YRTEELQPYVLDVVKKAENLMLERGEN--------KEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        93 ~~~~~~~~~~~~~v~~a~~~~~~~~~~--------~~Y~--~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      |+|..++.++++.|++++.+.+.+...        ...+  -..-+++.|+.++++++...     +.+|++ .|.|||+
T Consensus        29 yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~-----~~evif-~t~~~T~  102 (386)
T 3qm2_A           29 FNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPS-----NYKVLF-CHGGGRG  102 (386)
T ss_dssp             EECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCT-----TEEEEE-EESCTTH
T ss_pred             ccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCC-----CceEEE-EcCCchH
Confidence            334445566799999999876532100        0111  13467899999999986531     245766 1489999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcch--HHHhhhCCCCeeeeeee-cCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCC
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNH--KNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~G~~v~~v~~~-~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~  239 (459)
                      +++++  +...+.+||+|++..-+...+  ...++..| ++..+|.+ .+++..++++.++.++++   +++++.+++..
T Consensus       103 a~n~a--i~~l~~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~---~t~lV~~~h~e  176 (386)
T 3qm2_A          103 QFAGV--PLNLLGDKTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSD---NAAYLHYCPNE  176 (386)
T ss_dssp             HHHHH--HHHHCTTCCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCT---TCSCEEECSEE
T ss_pred             HHHHH--HHhccCCCCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCC---CCcEEEEECCc
Confidence            99998  455577999987655444343  33455678 88888874 123333777877776664   67778888888


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEE
Q 012647          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (459)
Q Consensus       240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (459)
                      |.||+.+  +++++|+     +|+++++|.+ |.++.-+.+.         +..+  +.+.|..|.+|++|  +|++++ 
T Consensus       177 t~tG~~i--~pi~~i~-----~g~~~~vDa~-qs~g~~pidv---------~~~~--~~~~s~hK~lGP~G--~g~l~v-  234 (386)
T 3qm2_A          177 TIDGIAI--DETPDFG-----PEVVVTADFS-STILSAPLDV---------SRYG--VIYAGAQKNIGPAG--LTLVIV-  234 (386)
T ss_dssp             TTTTEEC--CCCCCCC-----TTCCEEEECT-TTTTSSCCCG---------GGCS--EEEEETTTTTCCTT--EEEEEE-
T ss_pred             CCcCEec--Cchhhhc-----CCCEEEEEcc-cccCCCCCCc---------cccC--EEEEecccccCCCc--cEEEEE-
Confidence            8889952  2344453     7999999999 7776543322         2222  45689999999888  799876 


Q ss_pred             eCChhHHHH-------H---HHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Q 012647          320 CSSSDLAAR-------V---KSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA-EMEMMAGRIKNVRQKLFDSLS  388 (459)
Q Consensus       320 ~~~~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~  388 (459)
                        .++..++       +   ........+..  .++..+..+....|   ++..  .. .++++.++.+++++++++.|+
T Consensus       235 --~~~~~~~~~~~~p~~~~~~~~~~~~~~~g--Tp~v~~i~~l~~Al---~~~~--~~gG~~~i~~~~~~l~~~l~~~l~  305 (386)
T 3qm2_A          235 --REDLLGKAHESCPSILDYTVLNDNDSMFN--TPPTFAWYLSGLVF---KWLK--AQGGVAAMHKINQQKAELLYGVID  305 (386)
T ss_dssp             --EGGGCSCCCTTSCGGGCHHHHHHC---------CCSHHHHHHHHH---HHHH--HHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CHHHHhhhcccCCcHHHHHHHhhcCCCCC--CCcHHHHHHHHHHH---HHHH--HhcCHHHHHHHHHHHHHHHHHHHH
Confidence              4442111       0   11111111122  22322222222222   1110  12 368889999999999999999


Q ss_pred             hccCCCCCcccc-cC--C-ccee--eecC--CCHHHHHHHHhcccEEEcCC----C--cEEEccC-ChhhHHHHHHHHHH
Q 012647          389 AKDKSGKDWSFI-LR--Q-IGMF--SFTG--LNKAQSDNMTNKWHVYMTKD----G--RISLAGL-SLAKCEYLADAIID  453 (459)
Q Consensus       389 ~~~g~~~~~~~~-~~--~-~g~f--~~~~--l~~~~~~~ll~~~gI~v~~g----g--Ris~~~~-~~e~i~~~~~~l~~  453 (459)
                       ++|+   +... .+  . .+..  .+.+  ++.+++.. ++++||.+.+|    |  |+|+... |+++|++++++|++
T Consensus       306 -~~~~---~~~~~~~~~rs~~iv~f~~~~~~~~~~~~~~-L~~~gI~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~  380 (386)
T 3qm2_A          306 -NSDF---YRNDVAQANRSRMNVPFQLADNTLDKVFLEE-SFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMID  380 (386)
T ss_dssp             -TCSS---EECCBCGGGBCSSEEEEEESSGGGHHHHHHH-HHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             -HCCC---cccCCCHHHcCceEEEEECCCccccHHHHHH-HHHCCCEEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence             8763   1111 11  1 1222  2222  34455555 45579999886    3  9998876 89999999999999


Q ss_pred             HHhh
Q 012647          454 SYHN  457 (459)
Q Consensus       454 ~~~~  457 (459)
                      +.++
T Consensus       381 ~~~~  384 (386)
T 3qm2_A          381 FERR  384 (386)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8875

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.82  E-value=1.9e-19  Score=191.40  Aligned_cols=175  Identities=13%  Similarity=0.071  Sum_probs=124.4

Q ss_pred             CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeee
Q 012647          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEY  204 (459)
Q Consensus       125 ~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v  204 (459)
                      ..-+.++++.+++++..       .+.+++  ++|+++++.++  +.+.+.+||+|+++.|+|..+...+...|++++.+
T Consensus       204 ~g~v~~~ee~la~l~G~-------d~~i~~--~~Gtt~a~~~~--i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v  272 (755)
T 2vyc_A          204 TGAFGESEKYAARVFGA-------DRSWSV--VVGTSGSNRTI--MQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYM  272 (755)
T ss_dssp             CHHHHHHHHHHHHHHTC-------SEEEEE--SSHHHHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEE
T ss_pred             ccHHHHHHHHHHHHhCC-------CceEEE--CCcHHHHHHHH--HHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEE
Confidence            34457788888888653       244666  88889999998  55557899999999999999888888899999999


Q ss_pred             eeecCCCCC----C-----CHHHHHHHHHcCCC-------CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEe
Q 012647          205 RYYDPKTVG----L-----DFEGMIADIKAAPG-------GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFD  268 (459)
Q Consensus       205 ~~~~~~~~~----~-----d~e~l~~~i~~~~~-------~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~D  268 (459)
                      +...+ +++    +     |++.+++++++.++       +++++++++| ||||.+   .++++|+++|++||+++++|
T Consensus       273 ~~~~~-~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v---~dl~~I~~ia~~~~~~livD  347 (755)
T 2vyc_A          273 VPSRN-RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVC---YNAKEAQDLLEKTSDRLHFD  347 (755)
T ss_dssp             CCCBC-TTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEE---ECHHHHHHHHTTTCSEEEEE
T ss_pred             eCCCC-ccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCcee---cCHHHHHHHHHHcCCEEEEE
Confidence            87532 333    5     99999999976321       1236667788 799999   66889999999999999999


Q ss_pred             ccCCCCC-CCCCCCChhHHHHH--Hh-cCCeEEEEEcCCcCcccCCCCcceEEE
Q 012647          269 VAYQGFA-SGSLDNDASSVRLF--AT-RGMELLVAQSYSKNLGLYAERIGAMNV  318 (459)
Q Consensus       269 eay~~~~-~~~~~~~~~~~~~~--~~-~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (459)
                      ++|.... +++...+...+ ..  .+ ..++++++.|+||.+  +|.+.|.++.
T Consensus       348 eA~~~~~~~~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L--~g~~~g~~i~  398 (755)
T 2vyc_A          348 EAWYGYARFNPIYADHYAM-RGEPGDHNGPTVFATHSTHKLL--NALSQASYIH  398 (755)
T ss_dssp             CTTCTTGGGCGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSS--SCCTTCEEEE
T ss_pred             CcCchhcccCcccCCcchh-cCCcCCccCCCeEEEECccccc--cCcCCeeeee
Confidence            9987532 22100000111 00  11 234778999999985  4666555443

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.82  E-value=4.8e-20  Score=180.11  Aligned_cols=308  Identities=14%  Similarity=0.076  Sum_probs=196.6

Q ss_pred             CCccCcHHHHHHHHHHhhcCCC--------CCCCC--CcccHHHHHHHHHHHhcCCCCccccCceEEeec-ccchhHHHH
Q 012647           98 LQPYVLDVVKKAENLMLERGEN--------KEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQG-LSGTGSLRL  166 (459)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~--------~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t-~ggt~a~~l  166 (459)
                      +..++|+.|.+++.+.+.+...        ...++  ..-+++.|+.++++++...     +.+|++  + .|||+++++
T Consensus        20 t~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~-----~~evif--~t~~~T~a~n~   92 (377)
T 3e77_A           20 FQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPD-----NYKVIF--LQGGGCGQFSA   92 (377)
T ss_dssp             CSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCT-----TEEEEE--ESSHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCC-----CCeEEE--EcCchHHHHHH
Confidence            4445699999999997742100        00111  1245778899999986531     246766  5 799999999


Q ss_pred             HHHHHHHhCC--CCEEEEcCCCCcch--HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC
Q 012647          167 AAALIERYFP--GAKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (459)
Q Consensus       167 ~~~~~~~~~~--gd~Vlv~~p~y~~~--~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT  242 (459)
                      +  +...+.+  ||+|++..-++...  ...++..|.+++.+|.  +++++.+++.++.++++   +++++.+++..|.|
T Consensus        93 a--~~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~--~~~~~~~~~~~~~~i~~---~t~lV~~~h~et~t  165 (377)
T 3e77_A           93 V--PLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPK--LGSYTKIPDPSTWNLNP---DASYVYYCANETVH  165 (377)
T ss_dssp             H--HHHHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCC--CSSSCSCCCGGGCCCCT---TCSCEEEESEETTT
T ss_pred             H--HHhccCCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEecc--CCCcCCCCChHHhccCC---CccEEEEeCccCch
Confidence            8  4444544  99998777655443  3455677888777776  34556777777655543   67777888888888


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCC
Q 012647          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (459)
Q Consensus       243 G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~  322 (459)
                      |++.+.        +|+++|+++++|.+ |.++.-+.+.         +..+  +++.|..|.+|++|  +|++++   .
T Consensus       166 G~~~pi--------i~~~~~~~~~vD~~-q~~g~~~id~---------~~~~--~~~~s~~K~~gp~G--~g~l~~---~  220 (377)
T 3e77_A          166 GVEFDF--------IPDVKGAVLVCDMS-SNFLSKPVDV---------SKFG--VIFAGAQKNVGSAG--VTVVIV---R  220 (377)
T ss_dssp             TEECSS--------CCCCTTCCEEEECT-TTTTSSCCCG---------GGCS--EEEEEGGGTTSCTT--CEEEEE---E
T ss_pred             heEchh--------hhccCCCEEEEEcc-cccCCCCCch---------hhcC--EEEEecccccCCCc--cEEEEE---c
Confidence            999664        36789999999999 7776543322         2223  36789999999999  788866   3


Q ss_pred             hhHHHH-------H---HHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          323 SDLAAR-------V---KSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA-EMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       323 ~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                      ++.+++       +   ......  ...+..++..+..++...|+   +..  ++ .++.+.++.+++.+++++.|+ ++
T Consensus       221 ~~~l~~~~~~~p~~~~~~~~~~~--~~~~~Tp~v~~i~~l~~al~---~l~--~~GG~~~i~~~~~~l~~~l~~~L~-~~  292 (377)
T 3e77_A          221 DDLLGFALRECPSVLEYKVQAGN--SSLYNTPPCFSIYVMGLVLE---WIK--NNGGAAAMEKLSSIKSQTIYEIID-NS  292 (377)
T ss_dssp             TTSCSCCCTTSCGGGCHHHHHTT--TTCSSCCCHHHHHHHHHHHH---HHH--HTTHHHHHHHHHHHHHHHHHHHHH-TS
T ss_pred             HHHHhhccCCCCchhhHHHHhhc--CCCCCCchHHHHHHHHHHHH---HHH--HccCHHHHHHHHHHHHHHHHHHHH-hc
Confidence            332111       1   111111  11222444444333333321   110  12 368899999999999999999 87


Q ss_pred             -CCCCCccccc--C--Ccce---eeecCCC--H----HHHHHHHhcccEEEcCC----C--cEEEccC-ChhhHHHHHHH
Q 012647          392 -KSGKDWSFIL--R--QIGM---FSFTGLN--K----AQSDNMTNKWHVYMTKD----G--RISLAGL-SLAKCEYLADA  450 (459)
Q Consensus       392 -g~~~~~~~~~--~--~~g~---f~~~~l~--~----~~~~~ll~~~gI~v~~g----g--Ris~~~~-~~e~i~~~~~~  450 (459)
                       |    +....  +  ..+.   |.+.+++  .    .++..+. ++||.+.+|    |  |+|+... ++++++.++++
T Consensus       293 ~g----~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~l~~l~-~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~a  367 (377)
T 3e77_A          293 QG----FYVCPVEPQNRSKMNIPFRIGNAKGDDALEKRFLDKAL-ELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAF  367 (377)
T ss_dssp             TT----SEECCSCGGGBCSSEEEEEESSTTCCHHHHHHHHHHHH-HTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHH
T ss_pred             CC----ceecCCCHHHcCCcEEEEEcCCCCCchhHHHHHHHHHH-HCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHH
Confidence             4    33221  1  1222   3334442  2    3344554 469999887    3  9998876 89999999999


Q ss_pred             HHHHHhh
Q 012647          451 IIDSYHN  457 (459)
Q Consensus       451 l~~~~~~  457 (459)
                      |++++++
T Consensus       368 l~~~~~~  374 (377)
T 3e77_A          368 MKKFLEM  374 (377)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999875

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.81  E-value=2.8e-18  Score=171.23  Aligned_cols=332  Identities=13%  Similarity=0.046  Sum_probs=202.3

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...||+..|.-....++.  +|.|.+++.+.++... +...+..-..++.+.+++.+..       .+.+.+  +++|+
T Consensus        86 G~~ylD~~~g~~~~~lGH~--hp~v~~Av~~q~~~~~-~~~~~~~~~~~lae~l~~~~p~-------~~~v~f--~~SGs  153 (454)
T 4ao9_A           86 GHRYADFIAEYTAGVYGHS--APEIRDAVIEAMQGGI-NLTGHNLLEGRLARLICERFPQ-------IEQLRF--TNSGT  153 (454)
T ss_dssp             CCEEEESSGGGGTTTTCSC--CHHHHHHHHHHHHTCS-CCCSEESSHHHHHHHHHHHSTT-------CSEEEE--ESSHH
T ss_pred             CCEEEEccccHHhhcccCC--CHHHHHHHHHHHhcCC-CccCCcHHHHHHHHHHHHhCCC-------CCEEEE--eCchH
Confidence            4578898877643334443  7899999998887643 2222344456777888877532       477888  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhC-C-----CCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEe
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA-R-----VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-G-----~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~  235 (459)
                      +|++.+.++...+...++|+..+.+|.+....+-.. +     .....+|+       -|++.+++.+++..+....+|+
T Consensus       154 EA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~-------nd~~~l~~~l~~~~~~iAavIv  226 (454)
T 4ao9_A          154 EANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY-------NDAQTARAQIERHGPEIAVVLV  226 (454)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT-------TCHHHHHHHHHHTGGGEEEEEE
T ss_pred             HHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCC-------chHHHHHHHHhhcCCceEEEEe
Confidence            999999888777666689999999987653222111 1     11122222       3789999999876556677776


Q ss_pred             CCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcc
Q 012647          236 GCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIG  314 (459)
Q Consensus       236 ~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG  314 (459)
                      ...+...|.+ ++++.+++|.++|++||+++|+||+..+ ..+    ..+.. ...+-.++++   +++|.+| .|+.+|
T Consensus       227 EPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG-R~G----~~~a~-e~~gv~PDi~---t~gK~lg-gG~Pig  296 (454)
T 4ao9_A          227 EPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS-RLA----PHGLA-NKLGIRSDLT---TLGKYIG-GGMSFG  296 (454)
T ss_dssp             CSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG-GGS----TTCHH-HHHTCCCSEE---EEEGGGG-TTSSCE
T ss_pred             ccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC-CCc----cccch-hccCCCCcEE---EeccccC-CCCcce
Confidence            6667777865 5677899999999999999999999653 221    11122 2233345554   6899998 789999


Q ss_pred             eEEEEeCChhHHHHHHHHHHhh-ccccccCCchHHHHHH---HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012647          315 AMNVVCSSSDLAARVKSQLKRL-ARPMYSNPPVHGARIV---ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK  390 (459)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  390 (459)
                      ++.+   .++.++.+....... +..++ +.+.++..++   ...++++++.       ++..+.-+..++.|.+.+. +
T Consensus       297 a~~~---~~ei~~~~~~~~~~~~h~~T~-~gnPla~AAala~L~~l~~~~~~-------~~~~~~g~~l~~~L~~l~~-~  364 (454)
T 4ao9_A          297 AFGG---RADVMALFDPRTGPLAHSGTF-NNNVMTMAAGYAGLTKLFTPEAA-------GALAERGEALRARLNALCA-N  364 (454)
T ss_dssp             EEEE---CHHHHGGGCTTTCSCCCCCTT-TTCHHHHHHHHHHHHHTSCHHHH-------HHHHHHHHHHHHHHHHHHH-H
T ss_pred             eeee---HHHHHHHHhhccCCccccCCC-CCCHHHHHHHHHHHHHHhccChh-------HHHHHHHHHHHHHHHHHHh-h
Confidence            9866   777333321111111 22223 3333443333   3344544331       2222222223333333333 3


Q ss_pred             cCCCCCcccccCCcceeee--c-----------CCCH----HHHHHHHhcccEEEcCCCcEEEcc-CChhhHHHHHHHHH
Q 012647          391 DKSGKDWSFILRQIGMFSF--T-----------GLNK----AQSDNMTNKWHVYMTKDGRISLAG-LSLAKCEYLADAII  452 (459)
Q Consensus       391 ~g~~~~~~~~~~~~g~f~~--~-----------~l~~----~~~~~ll~~~gI~v~~ggRis~~~-~~~e~i~~~~~~l~  452 (459)
                      .+++.   .+...|.++.+  +           ..+.    .++..++++ ||++.|.|++.++. .|+++|++++++|+
T Consensus       365 ~~~~~---~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~-Gv~~~p~~~~~~s~~~T~~dId~~l~al~  440 (454)
T 4ao9_A          365 EGVAM---QFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNE-DIYSSPRGFVVLSLPLTDADIDRYVAAIG  440 (454)
T ss_dssp             HTBSC---EEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHT-TEECCTTCEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCCCE---EEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHC-CEEEcCCCCEEEeCCCCHHHHHHHHHHHH
Confidence            44321   12222333311  1           1122    234567774 99999999765443 39999999999999


Q ss_pred             HHHhhc
Q 012647          453 DSYHNV  458 (459)
Q Consensus       453 ~~~~~~  458 (459)
                      +++.+.
T Consensus       441 ~~l~~~  446 (454)
T 4ao9_A          441 SFIGGH  446 (454)
T ss_dssp             HHHHHS
T ss_pred             HHHHhc
Confidence            999864

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.81  E-value=6.1e-19  Score=171.69  Aligned_cols=315  Identities=10%  Similarity=0.033  Sum_probs=195.9

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCC-------CC-CC--CcccHHHHHHHHHHHhcCCCCccccCceE
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK-------EY-LP--IEGLAAFNKVTAELLFGADNSVLKEQRVA  153 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~-------~Y-~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~  153 (459)
                      .+++|+.|       +.++++.|++++.+.+......       .+ ++  ..-+++.|+.++++++...     +.+|+
T Consensus         5 ~~~~f~pg-------pt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~-----~~~v~   72 (361)
T 3m5u_A            5 RKINFSAG-------PSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELND-----DYEVL   72 (361)
T ss_dssp             CCEECCSS-------SCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCT-----TEEEE
T ss_pred             ceEeecCC-------CCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCC-----CceEE
Confidence            56677754       3446999999999877421000       01 11  2345788889999986531     33554


Q ss_pred             EeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcch--HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcE
Q 012647          154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (459)
Q Consensus       154 ~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~  231 (459)
                      + .|.|||++++++  +...+ +||++++..-+..++  ...++..|+++..++.+.+..+.++++. +  +++   +++
T Consensus        73 f-~t~~~T~a~n~~--~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~-~--l~~---~t~  142 (361)
T 3m5u_A           73 F-LQGGASLQFAMI--PMNLA-LNGVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNFDHIPRV-E--FSD---NAD  142 (361)
T ss_dssp             E-ESSHHHHHHHHH--HHHHC-CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTSCSCCCC-C--CCT---TSS
T ss_pred             E-EcCcHHHHHHHH--HHhcC-CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCCCcCChh-h--cCC---CCC
Confidence            3 289999999998  44445 888663222223233  3345678999999998432212256665 3  654   677


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCC
Q 012647          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE  311 (459)
Q Consensus       232 ~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~  311 (459)
                      ++.+++.+|.||++.+.     |   ++ +|+++++|.+ |.++..+.+.+           ...+++.|.+|.+|++| 
T Consensus       143 lv~~~~~e~~tG~~~~~-----i---~~-~~~~~~vD~~-q~~g~~~id~~-----------~~d~~~~s~~K~~gp~G-  200 (361)
T 3m5u_A          143 YAYICSNNTIYGTQYQN-----Y---PK-TKTPLIVDAS-SDFFSRKVDFS-----------NIALFYGGVQKNAGISG-  200 (361)
T ss_dssp             EEEEESEETTTTEECSS-----C---CC-CSSCEEEECG-GGTTSSCCCCT-----------TEEEEEEETTTTSSCTT-
T ss_pred             EEEEeCCCCCcceeCCc-----c---cc-cCCEEEEEcc-cccCCCCCCcc-----------cCCEEEEechhccCCCc-
Confidence            88888888888998652     3   33 4999999999 77765433221           23578889999999988 


Q ss_pred             CcceEEEEeCChhHHHHHHH----H---HHhh--ccccccCCchHHHHHHHHHhCChhhHHHHHH--HHHHHHHHHHHHH
Q 012647          312 RIGAMNVVCSSSDLAARVKS----Q---LKRL--ARPMYSNPPVHGARIVANVVGNPALFDEWKA--EMEMMAGRIKNVR  380 (459)
Q Consensus       312 RiG~~~~v~~~~~~~~~~~~----~---~~~~--~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~--~~~~~~~~~~~~~  380 (459)
                       +|++++   .++..+.+..    .   ....  ....+..++..+...+...|+   +.   .+  .++++.++.++++
T Consensus       201 -~g~l~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~---~l---~~~gG~~~i~~~~~~l~  270 (361)
T 3m5u_A          201 -LSCIFI---RKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMD---WL---LNQGGLDKVHEKNSQKA  270 (361)
T ss_dssp             -CEEEEE---EHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHH---HH---HTTTCHHHHHHHHHHHH
T ss_pred             -cEEEEE---cHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHH---HH---HHccCHHHHHHHHHHHH
Confidence             799877   6665544432    0   0000  111222344443333322221   10   11  2578889999999


Q ss_pred             HHHHHHHhhccCCCCCc-ccc-cC---Cccee--eecC---CCHHHHHHHHhcccEEEcCC----C--cEEEccC-Chhh
Q 012647          381 QKLFDSLSAKDKSGKDW-SFI-LR---QIGMF--SFTG---LNKAQSDNMTNKWHVYMTKD----G--RISLAGL-SLAK  443 (459)
Q Consensus       381 ~~l~~~L~~~~g~~~~~-~~~-~~---~~g~f--~~~~---l~~~~~~~ll~~~gI~v~~g----g--Ris~~~~-~~e~  443 (459)
                      +++++.|+ +++.   + ... .+   ..+..  .+.+   ++.++. ..++++||.+.+|    |  |+|+... ++++
T Consensus       271 ~~l~~~L~-~~~g---~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~-~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~ed  345 (361)
T 3m5u_A          271 TMLYECID-LSNG---FYKGHADKKDRSLMNVSFNIAKNKDLEPLFV-KEAEEAGMIGLKGHRILGGIRASIYNALNLDQ  345 (361)
T ss_dssp             HHHHHHHH-TSTT---SEEESSCGGGBCSSEEEEEESSCTTHHHHHH-HHHHHTTEECCBCCTTTCSEEEECCTTSCHHH
T ss_pred             HHHHHHHH-HCCC---eeeccCCHHHcCCeEEEEECCCchhhhHHHH-HHHHHCCCEEecCCCccCeEEEEccCCCCHHH
Confidence            99999999 8751   2 221 11   11222  2233   233344 4455679999887    3  9998876 8999


Q ss_pred             HHHHHHHHHHHHhh
Q 012647          444 CEYLADAIIDSYHN  457 (459)
Q Consensus       444 i~~~~~~l~~~~~~  457 (459)
                      +++++++|+++.++
T Consensus       346 Id~l~~al~~~~~~  359 (361)
T 3m5u_A          346 VKTLCEFMKEFQGK  359 (361)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998876

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.72  E-value=7.1e-17  Score=168.89  Aligned_cols=173  Identities=12%  Similarity=0.076  Sum_probs=120.9

Q ss_pred             CCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCe
Q 012647          122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPW  201 (459)
Q Consensus       122 Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v  201 (459)
                      ..|..-..++++.+|++++..       ..+++  ++|++.++..+  +.+.+.|||+|+++.++|..+...+...|+++
T Consensus       191 ~~~~g~i~eaE~~lA~~fGa~-------~a~~v--~nGts~An~~a--i~al~~pGD~VLv~r~~H~S~~~~l~lsGa~p  259 (715)
T 3n75_A          191 LDHSGPHKEAEQYIARVFNAD-------RSYMV--TNGTSTANKIV--GMYSAPAGSTILIDRNCHKSLTHLMMMSDVTP  259 (715)
T ss_dssp             TTTBTHHHHHHHHHHHHHTCS-------EEEEE--SSHHHHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHHHSCCEE
T ss_pred             CCCcHHHHHHHHHHHHHhCCC-------CceEE--CcHHHHHHHHH--HHHhCCCCCEEEECCCccHHHHHHHHHcCCEE
Confidence            335555789999999997542       34555  77778898887  55567899999999999999999999999999


Q ss_pred             eeeeeecCCCCCC---------CHHHHHHHHHcCCCC--cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEecc
Q 012647          202 SEYRYYDPKTVGL---------DFEGMIADIKAAPGG--SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVA  270 (459)
Q Consensus       202 ~~v~~~~~~~~~~---------d~e~l~~~i~~~~~~--~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Dea  270 (459)
                      ++++... +.+++         |++.+++++++.++.  ++++++++| ||+|.++   ++++|+++|++++  +++|||
T Consensus       260 v~v~~~~-~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~---dl~~I~ela~~~~--livDEA  332 (715)
T 3n75_A          260 IYFRPTR-NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLY---NTDFIKKTLDVKS--IHFDSA  332 (715)
T ss_dssp             EEECCCB-CTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEE---CHHHHHHHCCCSE--EEEECT
T ss_pred             EEEeccc-cccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccC---CHHHHHHHhCcCc--EEEccc
Confidence            9998753 34553         899999999864321  226777888 9999995   5567777787653  799999


Q ss_pred             CCCCC-CCCCCCChhHHHHHHhc---CCe-EEEEEcCCcCcccCCCC-cceEEE
Q 012647          271 YQGFA-SGSLDNDASSVRLFATR---GME-LLVAQSYSKNLGLYAER-IGAMNV  318 (459)
Q Consensus       271 y~~~~-~~~~~~~~~~~~~~~~~---~~~-~i~~~S~SK~~~~~G~R-iG~~~~  318 (459)
                      |.... +++.   ...... ...   .+. ++++.|+||.++  |+. .|++.+
T Consensus       333 H~~~~~f~~~---~~~~~a-l~~g~~aD~vii~~~S~hKtL~--gltqgs~i~v  380 (715)
T 3n75_A          333 WVPYTNFSPI---YEGKCG-MSGGRVEGKVIYETQSTHKLLA--AFSQASMIHV  380 (715)
T ss_dssp             TCTTGGGSGG---GTTSST-TSSSCCTTCEEEEEECHHHHSS--CCTTCEEEEE
T ss_pred             cccccccCCc---cccccc-cccCcCCCEEEEEEeccccccc--CCCCeeEEEe
Confidence            87653 2210   000000 111   122 366999999975  442 466643

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.65  E-value=5.5e-15  Score=148.09  Aligned_cols=339  Identities=14%  Similarity=0.058  Sum_probs=193.3

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC--CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...||+..|.-...-|+.  +|.|.+++.+.++...  ...+.+.....++.+.+++......     .+.+.+  +++
T Consensus        63 G~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-----~~~v~f--~~s  133 (456)
T 4atq_A           63 GNSFIDLGSGIAVTSVGAS--DPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDH-----AKRTVL--FNS  133 (456)
T ss_dssp             SCEEEESSHHHHTCTTCTT--CHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSS-----CEEEEE--ESS
T ss_pred             CCEEEEccccHHHHhcCCC--CHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHHhCCCCC-----CcEEEE--eCC
Confidence            3578898888543333443  7889999888775421  1223344455566777777643221     356778  899


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh-hhCC-------------CCeeeeeeec----CCCCCCCHHHHHH
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-NDAR-------------VPWSEYRYYD----PKTVGLDFEGMIA  221 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~-~~~G-------------~~v~~v~~~~----~~~~~~d~e~l~~  221 (459)
                      |++|++.+.++.+......+|+...-+|.+..... ...+             -.+..+|...    ......+.+.++.
T Consensus       134 GsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  213 (456)
T 4atq_A          134 GAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKR  213 (456)
T ss_dssp             HHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHH
T ss_pred             hHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHH
Confidence            99999999998877767789999999997653221 1111             1233444321    1111123343333


Q ss_pred             HHHc-----CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012647          222 DIKA-----APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME  295 (459)
Q Consensus       222 ~i~~-----~~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~  295 (459)
                      .+..     .++....+|+-..+...|.+ ++++-+++|.++|++||+++|.||+..+++-.+   ..+.... .+-.++
T Consensus       214 ~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG---~~~a~e~-~gv~PD  289 (456)
T 4atq_A          214 AITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTG---EWFAVDH-EGVVPD  289 (456)
T ss_dssp             HHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSGGGG-TTCCCS
T ss_pred             HHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCcc---ccccccc-cCCCCc
Confidence            3321     12345666666666667755 567889999999999999999999988875322   2222211 233355


Q ss_pred             EEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhh-ccccccCCchHHHHHHHHHh---CChhhHHHHHHHHHH
Q 012647          296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRL-ARPMYSNPPVHGARIVANVV---GNPALFDEWKAEMEM  371 (459)
Q Consensus       296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L---~~~~~~~~~~~~~~~  371 (459)
                      ++   +++|.+| .|+.+|.+.+   .++    +.+.+... +.+++ +.+.++..++...|   ++++           
T Consensus       290 iv---t~gK~lg-gg~P~~av~~---~~~----i~~~~~~~~~~~Tf-~gnpla~aaala~L~~i~~~~-----------  346 (456)
T 4atq_A          290 II---TMAKGIA-GGLPLSAITG---RAD----LLDAVHPGGLGGTY-GGNPVACAAALAAIDTMEQHD-----------  346 (456)
T ss_dssp             EE---EECGGGG-TTSSCEEEEE---EHH----HHTTSCTTSSCCSS-SSCHHHHHHHHHHHHHHHHTT-----------
T ss_pred             hh---hhhhccc-CcCCceeeEe---cHH----HHhcccccCCCCCC-CCChHHHHhhHHHHHHHhhcc-----------
Confidence            54   6789998 8999999866   666    33333222 22333 33444444444333   2222           


Q ss_pred             HHHHHHHHHHHHHHHHh---hccCCC--CCcccccCCcceeeecCC--------C----HHHHHHHHhcccEEEcCCC--
Q 012647          372 MAGRIKNVRQKLFDSLS---AKDKSG--KDWSFILRQIGMFSFTGL--------N----KAQSDNMTNKWHVYMTKDG--  432 (459)
Q Consensus       372 ~~~~~~~~~~~l~~~L~---~~~g~~--~~~~~~~~~~g~f~~~~l--------~----~~~~~~ll~~~gI~v~~gg--  432 (459)
                      ..++.++.-+++.+.|+   ++++..  +.+.-+.-. |+++-+.+        +    ..+...+++ +||.+.++|  
T Consensus       347 l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~-Gl~~giel~~~~~~~~~~~~~~~v~~~~~~-~Gvl~~~~g~~  424 (456)
T 4atq_A          347 LNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGR-GAMLAIELVQPGSKEPNAELTKAVAAACLK-EGVIILTCGTY  424 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEE-TTEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECEEECTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeec-ceEEEEEEecCCCCCcCHHHHHHHHHHHHH-CCCEEEecCCC
Confidence            23333344444444443   022100  001111222 22221111        1    234556666 599987654  


Q ss_pred             ----cEEEc-cCChhhHHHHHHHHHHHHhhc
Q 012647          433 ----RISLA-GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       433 ----Ris~~-~~~~e~i~~~~~~l~~~~~~~  458 (459)
                          ||... ..+++++++++++|.++++..
T Consensus       425 ~~~irl~PpL~it~~~id~~l~~l~~al~a~  455 (456)
T 4atq_A          425 GNVIRLLPPLVISDELLIDGLEVLAAAIKAH  455 (456)
T ss_dssp             SCEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence                55432 238999999999999999754

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.63  E-value=1e-13  Score=139.38  Aligned_cols=345  Identities=12%  Similarity=0.069  Sum_probs=195.2

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CCCCC--CCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~--~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      +...||+..|..-...++.  .|.|.+++.+.+++.. ...+.  +..-..+|-+.+++.....      -+.|.+  ++
T Consensus        66 G~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~q~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~~------~~~v~f--~~  135 (473)
T 4e3q_A           66 GRRYLDANSGLWNMVAGFD--HKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFD------SGRVFY--TN  135 (473)
T ss_dssp             CCEEEETTTTTTTCTTCSC--CHHHHHHHHHHHHHCCCCCCCTTEEEHHHHHHHHHHHHHSSCS------SCEEEE--ES
T ss_pred             CCEEEEcccCHHHhhccCC--CHHHHHHHHHHHHhcccccccccccCHHHHHHHHHHHhhCCCC------ccEEEE--eC
Confidence            3568898888653333443  7889999888776521 11111  1122234555555553211      367988  99


Q ss_pred             cchhHHHHHHHHHHHh-----CC-CCEEEEcCCCCcchHH-HhhhCC-----------CCeeeeeeec----CCCCCC--
Q 012647          159 SGTGSLRLAAALIERY-----FP-GAKVLISSPTWGNHKN-IFNDAR-----------VPWSEYRYYD----PKTVGL--  214 (459)
Q Consensus       159 ggt~a~~l~~~~~~~~-----~~-gd~Vlv~~p~y~~~~~-~~~~~G-----------~~v~~v~~~~----~~~~~~--  214 (459)
                      +|++|++.+.++...+     .+ ..+|+...-+|.+... .+...|           .....++...    ......  
T Consensus       136 sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  215 (473)
T 4e3q_A          136 SGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEE  215 (473)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHH
T ss_pred             chHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhh
Confidence            9999999998887654     13 3578888888875322 221111           1122222210    000000  


Q ss_pred             -----CHHHHHHHHHcC-CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHH
Q 012647          215 -----DFEGMIADIKAA-PGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR  287 (459)
Q Consensus       215 -----d~e~l~~~i~~~-~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~  287 (459)
                           ..+++++.+... ++....+|+...+...|.+ ++++-+++|.++|++||+++|.||+..+|+-.+   ..+...
T Consensus       216 ~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG---~~fa~e  292 (473)
T 4e3q_A          216 QFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTG---NTWGCV  292 (473)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTS---SSCHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCccc---chhHHH
Confidence                 123455555432 2345666666667777765 566789999999999999999999998886322   233332


Q ss_pred             HHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhh----ccccccCCchHHHHHHHHHhCChhhH
Q 012647          288 LFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRL----ARPMYSNPPVHGARIVANVVGNPALF  362 (459)
Q Consensus       288 ~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~L~~~~~~  362 (459)
                      . .+-.++++   +++|.++ .| +.+|.+.+   .++..+.+.......    ...++ +.+.++..++...|+   ..
T Consensus       293 ~-~gv~PDi~---t~~K~l~-gG~~Pl~av~~---~~~i~~~~~~~~~~~~~~~hg~T~-~Gnpla~Aaala~L~---~i  360 (473)
T 4e3q_A          293 T-YDFTPDAI---ISSKNLT-AGFFPMGAVIL---GPELSKRLETAIEAIEEFPHGFTA-SGHPVGCAIALKAID---VV  360 (473)
T ss_dssp             H-TTCCCSEE---EECGGGG-TTSSCCEEEEE---CHHHHHHHHHHHHHHSCCCCCCTT-TTCHHHHHHHHHHHH---HH
T ss_pred             h-cCCCCChH---Hhccccc-CCCCCcccccc---cHHHHHHhccccccccccccCCCC-CCCcchhhhhhhhhh---hh
Confidence            2 23445655   5799998 56 89999877   888666665443321    22333 334444444433332   11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeee--cC-------C------CHHHHHHHHhcccEE
Q 012647          363 DEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF--TG-------L------NKAQSDNMTNKWHVY  427 (459)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~--~~-------l------~~~~~~~ll~~~gI~  427 (459)
                         ++  +...++.++.-++|.+.|+ ++.-...+.-+...|-++.+  +.       .      ...+...+++ +||.
T Consensus       361 ---~~--~~l~~~~~~~g~~l~~~L~-~l~~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~-~Gll  433 (473)
T 4e3q_A          361 ---MN--EGLAENVRRLAPRFEERLK-HIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTD-LGLI  433 (473)
T ss_dssp             ---HH--SSHHHHHHHHHHHHHHHHH-HHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHH-TTEE
T ss_pred             ---cc--ccHHHHHHHHHHHHHHHHH-HHhcCCCeeEEeecceEEEEEEecCccccccccccHHHHHHHHHHHHH-CCcE
Confidence               00  2334455556666666666 54210112212222222221  10       1      1234556666 5999


Q ss_pred             EcCCC---cEEEc-cCChhhHHHHHHHHHHHHhhc
Q 012647          428 MTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       428 v~~gg---Ris~~-~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      +.+.|   ||+-. .++++++++++++|.++++++
T Consensus       434 ~~~~g~~i~l~PPL~it~~eid~~~~~l~~al~~v  468 (473)
T 4e3q_A          434 CRPLGQSVVLCPPFILTEAQMDEMFDKLEKALDKV  468 (473)
T ss_dssp             CEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99887   54422 238999999999999888763

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.62  E-value=3.7e-14  Score=138.37  Aligned_cols=234  Identities=10%  Similarity=-0.001  Sum_probs=144.7

Q ss_pred             HHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCC---C-CEEEEcCCCCcchHHHhhhCCCCeeeee
Q 012647          130 AFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP---G-AKVLISSPTWGNHKNIFNDARVPWSEYR  205 (459)
Q Consensus       130 ~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~---g-d~Vlv~~p~y~~~~~~~~~~G~~v~~v~  205 (459)
                      .|-+.++..+.+..|.+.. ...++  ++|+|+++..+  ++..+.+   | |+||++.-++......+..+|+++++++
T Consensus       116 ~ltn~l~ld~L~~~G~~~~-~~~fl--VnGsTgg~lam--ilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~  190 (501)
T 3hl2_A          116 KITNSLVLDIIKLAGVHTV-ANCFV--VPMATGMSLTL--CFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIE  190 (501)
T ss_dssp             HHHHHHHHHHHHHTTCTTC-CEEEE--ESSCHHHHHHH--HHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHHHHHHHHHcCCCCC-CcEEE--ECcHHHHHHHH--HHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEe
Confidence            4445444333333466422 23555  79999777766  4555553   4 9999999999999999999999999987


Q ss_pred             ee-cCCCCCCCHHHHHHHHHcCCCCcE-EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCCh
Q 012647          206 YY-DPKTVGLDFEGMIADIKAAPGGSF-ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA  283 (459)
Q Consensus       206 ~~-~~~~~~~d~e~l~~~i~~~~~~~~-~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~  283 (459)
                      .. +++..++|++.++++|++.+...+ +++.+.++|-.|.+   +++++|+++|++||+++++|+||......    ..
T Consensus       191 p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~---ddI~eIaeIch~~gIpllVDeAhGah~~~----~~  263 (501)
T 3hl2_A          191 NVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVP---DRLEELAVICANYDIPHIVNNAYGVQSSK----CM  263 (501)
T ss_dssp             EEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCC---CCHHHHHHHHHHHTCCEEEECTTCTTCHH----HH
T ss_pred             eeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCccc---ccHHHHHHHHHHcCCeEEEeCcchhhhhh----hh
Confidence            52 234678999999999987542344 44444556655566   89999999999999999999998765411    00


Q ss_pred             hHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHH
Q 012647          284 SSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFD  363 (459)
Q Consensus       284 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~  363 (459)
                      .-.......+.-++++.|.+|.+-.+   +|..++...+++.++++    .....+..+..|.+...++...+.      
T Consensus       264 ~lp~sA~~~GrAD~vVqS~HK~llvp---IGG~ii~~~d~e~l~~~----~~~yPGr~S~Spsldl~~tLL~lG------  330 (501)
T 3hl2_A          264 HLIQQGARVGRIDAFVQSLDKNFMVP---VGGAIIAGFNDSFIQEI----SKMYPGRASASPSLDVLITLLSLG------  330 (501)
T ss_dssp             HHHHHHHHHSCCCEEEEEHHHHHCCC---SSCEEEEESCHHHHHHH----HHTSCSCBCSHHHHHHHHHHHHHH------
T ss_pred             hhHHHHHhcCCCcEEEecccccceee---cCceEEEeCCHHHHHHH----HHhCCCCCCCcHHHHHHHHHHHHH------
Confidence            01112223333567889999998655   33322235677744443    222111122333332333322222      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          364 EWKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                        ++.++++.++..++.++|.+.|+ ++
T Consensus       331 --r~Gy~~ll~e~~ela~~L~~~L~-~l  355 (501)
T 3hl2_A          331 --SNGYKKLLKERKEMFSYLSNQIK-KL  355 (501)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence              34456666666667777777776 54

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.54  E-value=6.6e-14  Score=150.01  Aligned_cols=343  Identities=10%  Similarity=0.094  Sum_probs=186.2

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcC-CC--CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-EN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~--~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      ..+|+..|..-..-|+.. .|+|.+|+.+.+++- +.  ..+ ...-..+|-+.+++......     -+.+++  +++|
T Consensus       381 ~ylD~~sg~~~~~lGh~~-~p~i~~Ai~~Q~~~l~h~~~~~~-~~~~~~~Lae~L~~~~p~~~-----l~~vff--~~SG  451 (831)
T 4a0g_A          381 QQFDACASWWTQGPDPTF-QAELAREMGYTAARFGHVMFPEN-VYEPALKCAELLLDGVGKGW-----ASRVYF--SDNG  451 (831)
T ss_dssp             EEEETTHHHHTCCCCHHH-HHHHHHHHHHHHHHHSSCCCTTE-ECHHHHHHHHHHHHTTTTTT-----CCEEEE--ESSH
T ss_pred             heeeecccHhhcCCCCCC-CHHHHHHHHHHHhhccccccccc-CCHHHHHHHHHHHHhCCCCC-----CCEEEE--CCCh
Confidence            456777665423323321 688888888777541 10  011 11222344455544432110     257888  9999


Q ss_pred             hhHHHHHHHHH-HHh--CCC------------CEEEEcCCCCcch-HHHhhhCCCCe-----------------------
Q 012647          161 TGSLRLAAALI-ERY--FPG------------AKVLISSPTWGNH-KNIFNDARVPW-----------------------  201 (459)
Q Consensus       161 t~a~~l~~~~~-~~~--~~g------------d~Vlv~~p~y~~~-~~~~~~~G~~v-----------------------  201 (459)
                      ++|++.+.++. +.+  ..|            .+||...-+|.+- ...+...|...                       
T Consensus       452 SeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~  531 (831)
T 4a0g_A          452 STAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVF  531 (831)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEE
T ss_pred             hHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCcccc
Confidence            99999998886 322  122            3788888888643 23333333110                       


Q ss_pred             -----eeeeeecCCCCC---------CC------------------HHHHHHHHHc-----CCCCcEEEEeCCC-CCCCC
Q 012647          202 -----SEYRYYDPKTVG---------LD------------------FEGMIADIKA-----APGGSFILLHGCA-HNPTG  243 (459)
Q Consensus       202 -----~~v~~~~~~~~~---------~d------------------~e~l~~~i~~-----~~~~~~~ii~~~p-~NPTG  243 (459)
                           ..++.  +..+.         -|                  .+.+++.+++     .++...++|+-.. ++..|
T Consensus       532 ~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG  609 (831)
T 4a0g_A          532 LSNGSWNISL--PESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGG  609 (831)
T ss_dssp             EETTEEEEEC--CTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTT
T ss_pred             ccCCceEecC--CccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCC
Confidence                 01111  10000         01                  2456666652     1345666666664 78888


Q ss_pred             CCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeC
Q 012647          244 IDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCS  321 (459)
Q Consensus       244 ~~~-s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~  321 (459)
                      ..+ +++.+++|.++|++||+++|+||++.+++..+   ..+.... .+..++++   +|+|.++ .| +++|++++   
T Consensus       610 ~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG---~~fa~e~-~gv~PDii---tlsK~L~-gG~~Plgav~~---  678 (831)
T 4a0g_A          610 MHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLG---VETTTEL-LGCKPDIA---CFAKLLT-GGMVPLAVTLA---  678 (831)
T ss_dssp             SEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTS---BSSTHHH-HSSCCSEE---EECGGGG-TTSSCCEEEEE---
T ss_pred             CccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCC---CchhhHh-cCCCCcEE---EEecccc-cCccCcEEEEE---
Confidence            764 78889999999999999999999999886543   2223222 23334544   7999998 57 79999977   


Q ss_pred             ChhHHHHHHHHHH--hh-ccccccCCchHHHHHHHHH---hCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCC
Q 012647          322 SSDLAARVKSQLK--RL-ARPMYSNPPVHGARIVANV---VGNPALFDEWKAEMEMMAGRIKN-VRQKLFDSLSAKDKSG  394 (459)
Q Consensus       322 ~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~---L~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~L~~~~g~~  394 (459)
                      +++..+.+.....  .. ...++ +.+.+++.++...   ++++++.    +.+.+..+++++ .++.+.+.+. +.+. 
T Consensus       679 ~~~i~~~~~~~~~~~~~~hg~T~-~g~Pla~Aaala~L~~i~~~~l~----~~~~~~~~~l~~~l~~~l~~~l~-~~~~-  751 (831)
T 4a0g_A          679 TDAVFDSFSGDSKLKALLHGHSY-SAHAMGCATAAKAIQWFKDPETN----HNITSQGKTLRELWDEELVQQIS-SHSA-  751 (831)
T ss_dssp             CHHHHHTTCSSCGGGSCCCCCTT-TTCHHHHHHHHHHHHHHHCTTTC----TTBCTTSSBBCCCSCHHHHHHHH-HSTT-
T ss_pred             CHHHHHHHhcccccccceeecCC-cccHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHh-hCCC-
Confidence            8774433322100  01 12223 3444554444333   3232221    111111111111 1223444555 5431 


Q ss_pred             CCcccccCCcceeeecCC-------------CHHHHHHHHhcccEEEcCCC---cEEEc-cCChhhHHHHHHHHHHHHhh
Q 012647          395 KDWSFILRQIGMFSFTGL-------------NKAQSDNMTNKWHVYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       395 ~~~~~~~~~~g~f~~~~l-------------~~~~~~~ll~~~gI~v~~gg---Ris~~-~~~~e~i~~~~~~l~~~~~~  457 (459)
                        +..+...|.++ .+.+             ..++...+++ +||.+.|.|   ||+.. ..++++|++++++|.+++++
T Consensus       752 --v~~vrg~Gl~~-~iel~~~~~~~~~~~~~a~~~~~~l~e-~Gv~v~p~g~~lrl~pp~~~t~e~id~~~~~l~~~l~~  827 (831)
T 4a0g_A          752 --VQRVVVIGTLF-ALELKADASNSGYASLYAKSLLIMLRE-DGIFTRPLGNVIYLMCGPCTSPEICRRLLTKLYKRLGE  827 (831)
T ss_dssp             --EEEEEEETTEE-EEEEC---------CHHHHHHHHHHHH-TTEECCCBTTEEEEECCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             --ceeEeecccEE-EEEEecCccccccchHHHHHHHHHHHH-CCcEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence              23333333333 2221             1134556665 699999987   66632 23999999999999999987


Q ss_pred             cC
Q 012647          458 VS  459 (459)
Q Consensus       458 ~~  459 (459)
                      +.
T Consensus       828 l~  829 (831)
T 4a0g_A          828 FN  829 (831)
T ss_dssp             TC
T ss_pred             hc
Confidence            63

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.53  E-value=6.6e-13  Score=131.22  Aligned_cols=186  Identities=11%  Similarity=-0.040  Sum_probs=121.1

Q ss_pred             cHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhC----CCCEEEEcCCCCcchHHHhhhCCCCeee
Q 012647          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF----PGAKVLISSPTWGNHKNIFNDARVPWSE  203 (459)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~----~gd~Vlv~~p~y~~~~~~~~~~G~~v~~  203 (459)
                      ...+.+.+..++....|.+- ....++  ++|+|++..++  ++..++    +++.|+++.-++......+..+|++++.
T Consensus        96 ~~~~e~~~~~~~~~~lGlp~-~~~~~l--V~GaT~~~~a~--~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~  170 (450)
T 3bc8_A           96 LNKITNSLVLNVIKLAGVHS-VASCFV--VPMATGMSLTL--CFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVV  170 (450)
T ss_dssp             HHHHHHHHHHHHHHHHTCTT-CCEEEE--ESSCHHHHHHH--HHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCCC-CceEEE--ECCHHHHHHHH--HHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEE
Confidence            33455555555544334421 122355  78888555554  333333    3899999999999999999999999888


Q ss_pred             eeee-cCCCCCCCHHHHHHHHHcCC-CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCC
Q 012647          204 YRYY-DPKTVGLDFEGMIADIKAAP-GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN  281 (459)
Q Consensus       204 v~~~-~~~~~~~d~e~l~~~i~~~~-~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~  281 (459)
                      ++.. +++.+.+|++.++++|++.+ +.+.+++.+..+|.+|.+   +++++|+++|++||+++++|+||......    
T Consensus       171 v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~---ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~----  243 (450)
T 3bc8_A          171 IENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVP---DRLEELAVICANYDIPHVVNNAYGLQSSK----  243 (450)
T ss_dssp             ECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCC---CCHHHHHHHHHHHTCCEEEECTTTTTCHH----
T ss_pred             EEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCcee---cCHHHHHHHHHHCCCeEEEECCCchhhhh----
Confidence            7642 23467899999999998744 234445544456667788   89999999999999999999998865311    


Q ss_pred             ChhHH-HHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHH
Q 012647          282 DASSV-RLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARV  329 (459)
Q Consensus       282 ~~~~~-~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~  329 (459)
                       ...+ ........-+.++.|.+|.+..+ ...+++  ...+++..+.+
T Consensus       244 -~~~l~~~a~~~~~AD~~v~S~HK~l~a~-~~~~~l--~~rd~~~~~~~  288 (450)
T 3bc8_A          244 -CMHLIQQGARVGRIDAFVQSLDKNFMVP-VGGAII--AGFNEPFIQDI  288 (450)
T ss_dssp             -HHHHHHHHHHHSCCCEEEEEHHHHHSCC-SSCEEE--EESCHHHHHHH
T ss_pred             -hHhHHHHHhcccCCCEEEECCccCCCch-hccEEE--EecCHHHHHHH
Confidence             1111 11122123456778999998644 223443  44676654443

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.53  E-value=1.7e-12  Score=126.12  Aligned_cols=329  Identities=14%  Similarity=0.154  Sum_probs=189.0

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCC------CcccHHHHHHHHHHHhcCCCCccccCce-EEee
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP------IEGLAAFNKVTAELLFGADNSVLKEQRV-ATVQ  156 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~------~~g~~~lr~aia~~l~~~~~~~~~~~~i-~~~~  156 (459)
                      .-|+|-..++       .+++.|++++...+.+....+|+-      .+-++++.....+.....++..  .... +=+|
T Consensus        55 ~~ieLIASEN-------~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~--~A~w~VNVQ  125 (490)
T 3ou5_A           55 RGLELIASEN-------FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLD--PAQWGVNVQ  125 (490)
T ss_dssp             HSEECCTTCC-------CCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCC--TTTEEEECC
T ss_pred             cCceEecCCC-------cCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCC--ccccCCCCC
Confidence            5678876654       238999999988886544444421      2222333322222222222222  2211 1245


Q ss_pred             cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH--------hhhCC--CCeeeeeeecCCCCCCCHHHHHHHHHcC
Q 012647          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI--------FNDAR--VPWSEYRYYDPKTVGLDFEGMIADIKAA  226 (459)
Q Consensus       157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~--------~~~~G--~~v~~v~~~~~~~~~~d~e~l~~~i~~~  226 (459)
                      ..+|+.|+..+  +.+.+.|||+|+..+....+|..-        +...|  .+.+.++++ ++++.+|.|++++...+.
T Consensus       126 P~SGs~AN~av--y~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd-~~t~~IDyd~~~~~A~~~  202 (490)
T 3ou5_A          126 PYSGSPANLAV--YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLN-PKTGLIDYNQLALTARLF  202 (490)
T ss_dssp             CSSHHHHHHHH--HHHHCC-CCCEECBC----------------------------CBCEE-TTTTEECHHHHHHHHHHH
T ss_pred             cCCHHHHHHHH--HHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccC-CCCCcccHHHHHHHHhhc
Confidence            68889999888  677789999999999877665321        11122  356667775 457889999999988874


Q ss_pred             CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC
Q 012647          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (459)
Q Consensus       227 ~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (459)
                        ++++|+...-.+|-  .   -+++++.++|.+.|.++++|.++. ++.-++.-.++  +    .  ...++..|.+|+
T Consensus       203 --kPklIi~G~SaY~r--~---id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP--~----~--~ADvVTtTTHKT  267 (490)
T 3ou5_A          203 --RPRLIIAGTSAYAR--L---IDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSP--F----K--HADIVTTTTHKT  267 (490)
T ss_dssp             --CCSEEEECCSSCCS--C---CCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG--G----G--TCSEEEEESSST
T ss_pred             --CCCeEEECCccCcc--c---cCHHHHHHHHhhcccEEEechhhhhhhhcccccCCc--c----c--cceEEecccccc
Confidence              55677765555553  2   347778888889999999999963 23322221111  1    1  146788899999


Q ss_pred             cccCCCCcceEEEEeCCh--------------hHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012647          306 LGLYAERIGAMNVVCSSS--------------DLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEM  371 (459)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~  371 (459)
                      +  .|-|=|.+.  +...              ++.+++.+..-.   +..++|-.. ..++..+    .+.+.+..+.+.
T Consensus       268 L--rGPrGG~Il--~~~~~~~~~~k~~~~~~~~~~kkin~aVFP---g~qggp~~h-~IAAkAV----af~Ea~~p~fk~  335 (490)
T 3ou5_A          268 L--RGARSGLIF--YRKGVKAVDPKTGREIPYTFEDRINFAVFP---SLQGGPHNH-AIAAVAV----ALKQACTPMFRE  335 (490)
T ss_dssp             T--CSCSCEEEE--EECSEEEECC--CCEEECCCHHHHHHHHTT---TTCSSCCHH-HHHHHHH----HHHHHHSHHHHH
T ss_pred             c--cCCCceEEE--eccccccccccccchhHHHHHHHHHhhcCc---cccccchHH-HHHHHHH----HHHHHHhHhHHH
Confidence            7  577777773  4432              333444433222   112233222 2222111    222222344567


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCcccccC--Ccceeee----cCCCHHHHHHHHhcccEEEc----CC--------C-
Q 012647          372 MAGRIKNVRQKLFDSLSAKDKSGKDWSFILR--QIGMFSF----TGLNKAQSDNMTNKWHVYMT----KD--------G-  432 (459)
Q Consensus       372 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~--~~g~f~~----~~l~~~~~~~ll~~~gI~v~----~g--------g-  432 (459)
                      +.++..++.+.|.+.|. +.|    ++++..  +...+++    .+++...++.+|++.||.+.    |+        | 
T Consensus       336 Ya~qVv~NAkaLA~~L~-~~G----~~vvsGgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGi  410 (490)
T 3ou5_A          336 YSLQVLKNARAMADALL-ERG----YSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGL  410 (490)
T ss_dssp             HHHHHHHHHHHHHHHHH-HTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEE
T ss_pred             HHHHHHHHHHHHHHHHH-hCC----CeeecCCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCee
Confidence            78888888999999999 887    465532  1122222    15578889999999999774    32        3 


Q ss_pred             cEEEc-----cCChhhHHHHHHHHHHHHh
Q 012647          433 RISLA-----GLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       433 Ris~~-----~~~~e~i~~~~~~l~~~~~  456 (459)
                      ||.-.     ++.+++++++.+.|.+++.
T Consensus       411 RiGTpa~TtRG~~e~dm~~IA~~I~~~l~  439 (490)
T 3ou5_A          411 RLGAPALTSRQFREDDFRRVVDFIDEGVN  439 (490)
T ss_dssp             EEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             EECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            88632     3578999999999988764

>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, paenibacill GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A* 3sur_A* 3sus_A* 3sut_A* 3suu_A* 3suv_A* 3suw_A*

Probab=84.70  E-value=4.8  Score=40.27  Aligned_cols=116  Identities=12%  Similarity=0.104  Sum_probs=69.2

Q ss_pred             CCCccccCceEEeecccch-hHHHHHHHHHHHhCCC----------C-----EEEEcCCCCc------------------
Q 012647          143 DNSVLKEQRVATVQGLSGT-GSLRLAAALIERYFPG----------A-----KVLISSPTWG------------------  188 (459)
Q Consensus       143 ~~~~~~~~~i~~~~t~ggt-~a~~l~~~~~~~~~~g----------d-----~Vlv~~p~y~------------------  188 (459)
                      |.+.++++.|.+  +.... |+++-+..+..++..+          .     ..|...|.|.                  
T Consensus       124 Y~L~v~~~~i~I--~a~~~~G~~~glqTL~QLl~~~~~~~~~~~g~~~~lp~~~I~D~Prf~~RG~mLDvsR~f~~~~~i  201 (525)
T 3gh5_A          124 YDLITTSNQVTL--TANKPEGVFRGNQTLLQLLPAGIEKNTVVSGVQWVIPHSNISDKPEYEYRGLMLDVARHFFTVDEV  201 (525)
T ss_dssp             EEEEECSSEEEE--EESSHHHHHHHHHHHHHHSCTTTTCSSCCCSCCCEEEEEEEEECCSCSEEEEEEECSSSCCCHHHH
T ss_pred             eEEEEeCCEEEE--EECCHHHHHHHHHHHHHHHhhhccccccccCcceeccceEEeecCCcceeccccCCCCCCCCHHHH
Confidence            445677777777  55554 4444444444444321          1     2455557764                  


Q ss_pred             -chHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEE
Q 012647          189 -NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFF  267 (459)
Q Consensus       189 -~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~  267 (459)
                       .+...+..++..+..+-+.++.+|++..+..-+.-.. ...+      ....+.|-.+|++++++|++.|+++||-||-
T Consensus       202 k~~id~mA~~KlN~lH~HltDdqgwriei~~~P~Lt~~-Ga~~------~~~~~~~g~YT~~di~eIv~YA~~rgI~VIP  274 (525)
T 3gh5_A          202 KRQIDLASQYKINKFHMHLSDDQGWRIEIKSWPDLIEI-GSKG------QVGGGPGGYYTQEQFKDIVSYAAERYIEVIP  274 (525)
T ss_dssp             HHHHHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHT-TTSC------CTTSSCCCCBCHHHHHHHHHHHHTTTCEEEE
T ss_pred             HHHHHHHHHcCCcEEEEEeccCCccccccccchhhhhc-cCcc------ccCCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence             2233344567777777776666777776655443322 1110      1122346789999999999999999998873

>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*

Probab=81.31  E-value=7.7  Score=38.75  Aligned_cols=67  Identities=7%  Similarity=-0.041  Sum_probs=42.8

Q ss_pred             hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEE
Q 012647          194 FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFF  267 (459)
Q Consensus       194 ~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~  267 (459)
                      +..++..+..+-+.++.+|.+..+..-+.-.. ...+      ......|-.+|++++++|++.|+++||-||-
T Consensus       183 ma~~KlN~lh~HltDdq~wriei~~~P~Lt~~-ga~~------~~~~~~~g~YT~~di~eiv~yA~~rgI~VIP  249 (512)
T 1jak_A          183 VARYKYNKLHLHLSDDQGWRIAIDSWPRLATY-GGST------EVGGGPGGYYTKAEYKEIVRYAASRHLEVVP  249 (512)
T ss_dssp             HHTTTCCEEEEECBCSSCBCBCCTTSTHHHHT-TTSC------CTTSSCCCCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHcCCcEEEEEeccCCCceehhhhhHHHHhh-cCcc------ccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence            33456666666665555677765554443222 1010      1122337889999999999999999998883

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	459
d1ajsa_	412	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig	1e-108
d7aata_	401	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi	1e-104
d3tata_	397	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	1e-100
d2q7wa1	396	c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT	8e-99
d2ay1a_	394	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	3e-98
d1yaaa_	412	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak	3e-97
d1gdea_	388	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	7e-14
d1b5pa_	382	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	4e-13
d1j32a_	388	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho	1e-12
d1xi9a_	395	c.67.1.1 (A:) Putative alanine aminotransferase {P	4e-08
d1o4sa_	375	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	2e-04
d2hoxa1	425	c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ	0.001

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

 Score =  323 bits (828), Expect = e-108
 Identities = 183/404 (45%), Positives = 250/404 (61%), Gaps = 8/404 (1%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE- 115
           S F  V  A P  +  +   F+ D D +K+NLGVGAYRT++ QP+VL VV+K E  +   
Sbjct: 4   SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN 63

Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
              N EYLPI GLA F    + L  G D+  L+E+RV  VQ L GTG+LR+ A  + R++
Sbjct: 64  SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWY 123

Query: 176 -----PGAKVLISSPTWGNHKNIFNDA-RVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG 229
                    V +SSPTW NH  +F  A       YRY+D +  GLD +G ++D++ AP  
Sbjct: 124 NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEF 183

Query: 230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF 289
           S  +LH CAHNPTG DPTPEQW++IA V++ +   PFFD AYQGFASG+L+ DA ++R F
Sbjct: 184 SIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 243

Query: 290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGA 349
            + G EL  AQS+SKN GLY ER+G + VV    D   RV SQ++++ R  +SNPP  GA
Sbjct: 244 VSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGA 303

Query: 350 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF 409
           RIVA  + +P LF EW   ++ MA RI ++R +L   L A    G  W+ I  QIGMFSF
Sbjct: 304 RIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPG-TWNHITDQIGMFSF 362

Query: 410 TGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID 453
           TGLN  Q + + N+ H+Y+   GRI++ GL+    +Y+A +I +
Sbjct: 363 TGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVATSIHE 406

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

 Score =  313 bits (802), Expect = e-104
 Identities = 201/396 (50%), Positives = 276/396 (69%), Gaps = 2/396 (0%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S +  V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL+ V+KAE ++  +
Sbjct: 2   SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK 61

Query: 117 GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF- 175
             +KEYLPI GLA F + +AEL  G ++   K  R  TVQG+SGTGSLR+ A  ++R+F 
Sbjct: 62  KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFK 121

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
               V +  P+WGNH  IF DA +    YRYYDPKT  LDF G + DI   P  S ILLH
Sbjct: 122 FSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLH 181

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DP  EQW+++A V++++N + +FD+AYQGFASG ++ DA ++R F  +G++
Sbjct: 182 ACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGID 241

Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV 355
           ++++QSY+KN+GLY ER GA  V+C  ++ A RV+SQLK L RPMYSNPP++GARI + +
Sbjct: 242 VVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLI 301

Query: 356 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKA 415
           +  P L  EW  E++ MA RI ++R +L  +L  +  S  +W  I  QIGMF FTGL   
Sbjct: 302 LNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKE-GSSHNWQHITDQIGMFCFTGLKPE 360

Query: 416 QSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
           Q + +T ++ +YMTKDGRIS+AG++ +   YLA AI
Sbjct: 361 QVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAI 396

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

 Score =  304 bits (780), Expect = e-100
 Identities = 165/394 (41%), Positives = 240/394 (60%), Gaps = 3/394 (0%)

Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAE-NLMLERG 117
           F+ V     DPIL + E FK D    K+NL +G Y  E+     L  V +AE  L  +  
Sbjct: 2   FQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPH 61

Query: 118 ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG 177
               YLP+EGL  +    A LLFGAD+ VLK+QRVAT+Q L G+G+L++ A  ++RYFP 
Sbjct: 62  GASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPE 121

Query: 178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237
           + V +S PTW NH  IF  A    S Y +YD  T G+ F  ++A +K  P  S +LLH C
Sbjct: 122 SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPC 181

Query: 238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297
            HNPTG D T +QW+ + ++++ +  IPF D+AYQGF +G ++ DA ++R  A+ G+  L
Sbjct: 182 CHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAG-MEEDAYAIRAIASAGLPAL 240

Query: 298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVG 357
           V+ S+SK   LY ER+G ++V+C  ++ A RV  QLK   R  YS+PP  GA++VA V+ 
Sbjct: 241 VSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLN 300

Query: 358 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQS 417
           + AL   W AE+E M  RI  +RQ+L   LS +    +++ ++L Q GMFS+TGL+ AQ 
Sbjct: 301 DEALKASWLAEVEEMRTRILAMRQELVKVLSTE-MPERNFDYLLNQRGMFSYTGLSAAQV 359

Query: 418 DNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451
           D +  ++ VY+   GR+ +AGL+ A  + +A A 
Sbjct: 360 DRLREEFGVYLIASGRMCVAGLNTANVQRVAKAF 393

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

 Score =  299 bits (767), Expect = 8e-99
 Identities = 175/395 (44%), Positives = 247/395 (62%), Gaps = 2/395 (0%)

Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61

Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121

Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181

Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240

Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP HGA +VA ++ N
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300

Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
            AL   W+ E+  M  RI+ +RQ   ++L  K  + +D+SFI++Q GMFSF+GL K Q  
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEK-GANRDFSFIIKQNGMFSFSGLTKEQVL 359

Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID 453
            +  ++ VY    GR+++AG++      L +AI+ 
Sbjct: 360 RLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVA 394

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

 Score =  298 bits (763), Expect = 3e-98
 Identities = 148/395 (37%), Positives = 213/395 (53%), Gaps = 5/395 (1%)

Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
              +    PD IL +   F+AD  + K++LGVG Y+       ++  V  AE  MLE   
Sbjct: 2   LGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETET 61

Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K Y  + G   F K   EL+ G      K +  AT+  + GTG+LR A  L     P  
Sbjct: 62  TKTYAGLSGEPEFQKAMGELILGDGL---KSETTATLATVGGTGALRQALELARMANPDL 118

Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S PTW NH +I N   +P   YRY+D +T G+DFEGM AD+ AA  G  +LLHGC 
Sbjct: 119 RVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCC 178

Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTG + T +QW +IA ++++   +P  D+AYQGF    L+ DA+  RL A+R  E+L+
Sbjct: 179 HNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGD-GLEEDAAGTRLIASRIPEVLI 237

Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358
           A S SKN G+Y ER G +  +C+ +      +  +  L R  YS PP HGA+IV+ V+  
Sbjct: 238 AASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTT 297

Query: 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSD 418
           P L  +W AE+E +   +  +R++L   L     S   + F+    GMFS  G    Q  
Sbjct: 298 PELRADWMAELEAVRSGMLRLREQLAGELRDLSGSD-RFGFVAEHRGMFSRLGATPEQVK 356

Query: 419 NMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID 453
            +  ++ +YM  D RI++AGL+      LA AII+
Sbjct: 357 RIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIE 391

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

 Score =  296 bits (758), Expect = 3e-97
 Identities = 164/405 (40%), Positives = 233/405 (57%), Gaps = 9/405 (2%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-E 115
           + F  + + PPD + G+ + +  D    K++LG+GAYR +  +P+VL  VK AE L+  +
Sbjct: 3   TLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHND 62

Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
              N EYL I GL +     A+++FG  +  L+E RV +VQ LSGTG+L ++A    ++F
Sbjct: 63  SSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFF 122

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
           P   V +S PTW NH  IF +  +  + Y Y+  +T  LD  G +  I+ AP GS  +LH
Sbjct: 123 PDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLH 182

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM- 294
            CAHNPTG+DPT EQW +I D I  KNHI  FD AYQGFA+G LD DA +VRL   +   
Sbjct: 183 SCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLST 242

Query: 295 --ELLVAQSYSKNLGLYAERIGAMNVVCSSSD----LAARVKSQLKRLARPMYSNPPVHG 348
              + V QS++KN G+Y ER+G  ++  +       +   V SQL ++ R   SNPP +G
Sbjct: 243 VSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYG 302

Query: 349 ARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFS 408
           A+IVA ++  P L ++W  +M  M+ RI  +R  L D L      G +W  I+ Q GMFS
Sbjct: 303 AKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPG-NWDHIVNQCGMFS 361

Query: 409 FTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID 453
           FTGL       +     VY+   GR S+AGL+    EY+A AI +
Sbjct: 362 FTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVAKAIDE 406

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 70.6 bits (172), Expect = 7e-14
 Identities = 50/253 (19%), Positives = 92/253 (36%), Gaps = 20/253 (7%)

Query: 66  PPDPILGVSEAFKADTDEKKLNLGVG--AYRTEELQPYVLDVVKKAENLMLERGENKEYL 123
               I  + +   A   +  ++LG+G   + T     ++ +  K+A    L++G    Y 
Sbjct: 10  SASEIRKLFD--IAAGMKDVISLGIGEPDFDTP---QHIKEYAKEA----LDKGLTH-YG 59

Query: 124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLIS 183
           P  GL    +  AE L   +      +    V   +    L   +A ++    G +VLI 
Sbjct: 60  PNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLK---DGEEVLIP 116

Query: 184 SPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTG 243
           +P + ++      A     E   Y+     L+ + +   +         L+     NPTG
Sbjct: 117 TPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTR---ALIINSPCNPTG 173

Query: 244 IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS 303
              T +  E+IAD + E + I   D  Y+ F     D    S+          +    +S
Sbjct: 174 AVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYD--DARHYSIASLDGMFERTITVNGFS 231

Query: 304 KNLGLYAERIGAM 316
           K   +   R+G +
Sbjct: 232 KTFAMTGWRLGFV 244

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

 Score = 68.2 bits (166), Expect = 4e-13
 Identities = 52/311 (16%), Positives = 95/311 (30%), Gaps = 27/311 (8%)

Query: 66  PPDPILGVSEAFKADTDEKK--LNLGVG--AYRTEELQPYVLDVVKKAENLMLERGENKE 121
            P   + V+        +    + L  G   + T     +V +  ++A    L +G+ K 
Sbjct: 12  KPSATVAVNAKALELRRQGVDLVALTAGEPDFDTP---EHVKEAARRA----LAQGKTK- 63

Query: 122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL 181
           Y P  G+    +  AE     +   +  +      G S        A L     PG +V+
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL----DPGDEVI 119

Query: 182 ISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241
           + SP W ++  +   A     E      +    D E +   I         L+    +NP
Sbjct: 120 VLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTK---ALVVNSPNNP 176

Query: 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS 301
           TG     E  E +A +  E +     D  Y+           S  R+        L    
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYE--GEHFSPGRVAPEH---TLTVNG 231

Query: 302 YSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPAL 361
            +K   +   RIG     C   ++   + S  ++      +         + N   + A 
Sbjct: 232 AAKAFAMTGWRIGYA---CGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAF 288

Query: 362 FDEWKAEMEMM 372
            +  +      
Sbjct: 289 VEMAREAYRRR 299

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

 Score = 67.1 bits (163), Expect = 1e-12
 Identities = 51/256 (19%), Positives = 88/256 (34%), Gaps = 22/256 (8%)

Query: 66  PPDPILGVSEAFKADTDEKK--LNLGVGA--YRTEELQPYVLDVVKKAENLMLERGENKE 121
            P   L +    KA   E     +   G   + T     ++++  K A    LE+G+ + 
Sbjct: 11  SPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTP---KHIVEAAKAA----LEQGKTR- 62

Query: 122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL 181
           Y P  G     +  A+ L   +        +    G   +    L  A+IE   PG +V+
Sbjct: 63  YGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFN-LMLAMIE---PGDEVI 118

Query: 182 ISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241
           I +P W ++  +   A                +  E +   I        +L+     NP
Sbjct: 119 IPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTK---LLVFNTPSNP 175

Query: 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA-Q 300
           TG+  TP++   IA V  E       D  Y+       D    S+   +    E  V   
Sbjct: 176 TGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYD--DAQHLSIGAASPEAYERSVVCS 233

Query: 301 SYSKNLGLYAERIGAM 316
            ++K   +   R+G +
Sbjct: 234 GFAKTYAMTGWRVGFL 249

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 52.6 bits (125), Expect = 4e-08
 Identities = 56/326 (17%), Positives = 101/326 (30%), Gaps = 30/326 (9%)

Query: 86  LNLGVGAYRTEELQP--YVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGAD 143
           + L +G     + QP  ++ +   KA    ++ G N  Y   EGL    K   E      
Sbjct: 33  IRLNIGDPVKFDFQPPEHMKEAYCKA----IKEGHNY-YGDSEGLPELRKAIVER-EKRK 86

Query: 144 NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSE 203
           N V        V          +  A      PG ++L+  P++  +  +         E
Sbjct: 87  NGVDITPDDVRVTAAVTEALQLIFGA---LLDPGDEILVPGPSYPPYTGLVKFYGGKPVE 143

Query: 204 YRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNH 263
           YR  + +    D + +   I         +     +NPTG     +  E+I ++  E   
Sbjct: 144 YRTIEEEDWQPDIDDIRKKITDRT---KAIAVINPNNPTGALYDKKTLEEILNIAGEYEI 200

Query: 264 IPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS 323
               D  Y             S+    T+ + ++V    SK       R+G M  V   +
Sbjct: 201 PVISDEIYDLMTYEGEHISPGSL----TKDVPVIVMNGLSKVYFATGWRLGYMYFVDPEN 256

Query: 324 DLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKL 383
            L+   ++  +     +  N P   A I                 ++    ++K  R  +
Sbjct: 257 KLSEVREAIDRLARIRLCPNTPAQFAAIAG--------LTGPMDYLKEYMKKLKERRDYI 308

Query: 384 FDSLSAKDKSGKDWSFILRQIGMFSF 409
           +  L          S    Q   + F
Sbjct: 309 YKRL----NEIPGISTTKPQGAFYIF 330

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 45/260 (17%), Positives = 86/260 (33%), Gaps = 24/260 (9%)

Query: 66  PPDPILGVSEAFKADTDEKK--LNLGVG--AYRTEELQPYVLDVVKKAENLMLERGENKE 121
           P    + +    KA   + +  +NL  G   + T      V++   +     L++GE K 
Sbjct: 9   PISKTMELDAKAKALIKKGEDVINLTAGEPDFPTP---EPVVEEAVRF----LQKGEVK- 60

Query: 122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAA-ALIERYFPGAKV 180
           Y    G+    +         +           V       +L  A  AL++   PG +V
Sbjct: 61  YTDPRGIYELRE--GIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLD---PGDEV 115

Query: 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
           ++ SP W ++      A    +    +  K      E +        G +  +L    +N
Sbjct: 116 IVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEV---EGLLVGKTKAVLINSPNN 172

Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTG+    E  E +  + +++N     D  Y              V     R   ++   
Sbjct: 173 PTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDR---IVYIN 229

Query: 301 SYSKNLGLYAERIGAMNVVC 320
            +SK+  +   R+G +    
Sbjct: 230 GFSKSHSMTGWRVGYLISSE 249

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

 Score = 38.5 bits (89), Expect = 0.001
 Identities = 36/299 (12%), Positives = 74/299 (24%), Gaps = 55/299 (18%)

Query: 160 GTGSLRLAAALI---------ERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK 210
           G G  +L   L+             P +KV+  +P +   +                   
Sbjct: 129 GVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKK--------GY 180

Query: 211 TVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVA 270
               +    +          +I +    +NP G+        K    I        +D+ 
Sbjct: 181 VWAGNAANYVNVSNPEQ---YIEMVTSPNNPEGL--LRHAVIKGCKSI--------YDMV 227

Query: 271 YQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVK 330
           Y       +            +  E ++  + SK  G    R G    +     +     
Sbjct: 228 YYWPHYTPI----------KYKADEDILLFTMSKFTGHSGSRFG--WALIKDESVYNN-- 273

Query: 331 SQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK 390
             L           P               +  E  A ++   G ++++    F  L  +
Sbjct: 274 --LLNYMTKNTEGTPRETQLRSL------KVLKEVVAMVKTQKGTMRDLNTFGFKKLRER 325

Query: 391 DKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLAD 449
             +      +L Q   FS+  L +++  N   +          +         C     
Sbjct: 326 WVNITA---LLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQ 381

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	459
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	100.0
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	100.0
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	100.0
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	100.0
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	100.0
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	100.0
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	100.0
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	100.0
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	100.0
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	100.0
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	100.0
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	100.0
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	100.0
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	100.0
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	100.0
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	100.0
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	100.0
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	100.0
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	100.0
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	100.0
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	100.0
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	100.0
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	100.0
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	100.0
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	100.0
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	100.0
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	100.0
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.94
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.94
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.94
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.92
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.91
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.91
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.91
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.89
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.89
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.88
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.87
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.85
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.84
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.83
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.82
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.8
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.8
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.8
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.8
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.76
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.76
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.75
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.74
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.74
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.74
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.73
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.71
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.7
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.69
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.69
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.68
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.67
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.67
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.66
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.65
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.65
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.64
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.62
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.62
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.61
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.6
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.6
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.6
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.58
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.58
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.57
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.57
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.55
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.55
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.54
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.52
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.51
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.5
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.47
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.42
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.39
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.31
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	98.82
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	98.54

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=100.00  E-value=4e-64  Score=499.63  Aligned_cols=399  Identities=50%  Similarity=0.906  Sum_probs=347.9

Q ss_pred             cccCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHH
Q 012647           57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTA  136 (459)
Q Consensus        57 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia  136 (459)
                      |+|++++..|+|||+++++.+++++++++|||++|.|+|+++.+++++.|++++.+.+..+..++|+|..|.++||++++
T Consensus         2 ~~~~~~~~~p~d~i~~~~~~~~~d~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia   81 (401)
T d7aata_           2 SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASA   81 (401)
T ss_dssp             CSSTTCCCCCCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHH
T ss_pred             CccccCCCCCCChHHHHHHHHhCCCCCCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHH
Confidence            68999999999999999999999999999999999999999988888999999999887766578999999999999999


Q ss_pred             HHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH-hCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCC
Q 012647          137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD  215 (459)
Q Consensus       137 ~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d  215 (459)
                      +++.+.++..+.+++|++.++.++++++..+..++.. +.|||+|++++|+|+.|...++.+|++++++|+.+++++.+|
T Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~  161 (401)
T d7aata_          82 ELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLD  161 (401)
T ss_dssp             HHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEEC
T ss_pred             HHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHHHcCCeEEEEecccccccccc
Confidence            9999999988889999886667777777665444443 569999999999999999999999999999999878888999


Q ss_pred             HHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012647          216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME  295 (459)
Q Consensus       216 ~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~  295 (459)
                      ++.+++.+....++++++++|+||||||.+++.+++++|+++|++|+++||+||+|.++.+++..........+....++
T Consensus       162 ~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~  241 (401)
T d7aata_         162 FTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGID  241 (401)
T ss_dssp             HHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCC
T ss_pred             HHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcc
Confidence            99999998776678999999999999999999999999999999999999999999999987422222222233445678


Q ss_pred             EEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012647          296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR  375 (459)
Q Consensus       296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~  375 (459)
                      ++++.|+||.++++|||+||+++.....+...++...+....+..+.+++.+.|.++..++.++.+..+|.+++++++++
T Consensus       242 ~~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~  321 (401)
T d7aata_         242 VVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADR  321 (401)
T ss_dssp             CEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             cceeEeccccceeeccccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999977333333334444444444556677899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHHHHHHH
Q 012647          376 IKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       376 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~l~~~~  455 (459)
                      |+++|+.+.+.|+ +++.+..|.++.+++|||+|++++.+++++|++++||++.||+||||+++++++|++++++|.+++
T Consensus       322 ~~~~r~~l~~~L~-~~~~~~~~~~~~~~~G~F~~~~ls~e~~~~L~~e~gV~~~pg~Ris~a~~~~~~i~~la~ai~~v~  400 (401)
T d7aata_         322 IISMRTQLVSNLK-KEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVT  400 (401)
T ss_dssp             HHHHHHHHHHHHH-HTTCCSCCHHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HhCCCCCcceECCCCeEEEecCCCHHHHHHHHHhCCEEECCCcEEEeccCCHHHHHHHHHHHHHHh
Confidence            9999999999999 887666788889999999999999999999999999999999999999999999999999999987


Q ss_pred             h
Q 012647          456 H  456 (459)
Q Consensus       456 ~  456 (459)
                      +
T Consensus       401 k  401 (401)
T d7aata_         401 K  401 (401)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=100.00  E-value=6.1e-62  Score=485.15  Aligned_cols=402  Identities=41%  Similarity=0.748  Sum_probs=346.7

Q ss_pred             cccCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhc-CCCCCCCCCcccHHHHHHH
Q 012647           57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GENKEYLPIEGLAAFNKVT  135 (459)
Q Consensus        57 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~Y~~~~g~~~lr~ai  135 (459)
                      |.|++++..|+|+|+++.+.+++++++++|||++|.|+|+++.+++++.|+++.+.+... ...++|+|..|.++||+++
T Consensus         3 ~~~~~~~~~~~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~ai   82 (412)
T d1yaaa_           3 TLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNA   82 (412)
T ss_dssp             TTTTTCCCCCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHH
T ss_pred             ChhhcCCcCCCChHHHHHHHHhcCCCCCcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHH
Confidence            679999999999999999999999999999999999999999988889999987766543 3447899999999999999


Q ss_pred             HHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCC
Q 012647          136 AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD  215 (459)
Q Consensus       136 a~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d  215 (459)
                      ++++.+.++..+.++.++++++.|+++++.++..+...+.|||.|++++|+|+.|...++.+|++++.+|+.+++++.+|
T Consensus        83 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~  162 (412)
T d1yaaa_          83 AKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLD  162 (412)
T ss_dssp             HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEEC
T ss_pred             HHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHHHHHHcCCceeccccccccccccc
Confidence            99999998887777888776667777777776555556779999999999999999999999999999999878888999


Q ss_pred             HHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH---Hhc
Q 012647          216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF---ATR  292 (459)
Q Consensus       216 ~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~---~~~  292 (459)
                      ++.+++.+...+++++++++++||||||.+++.+++++|+++|+++++++|+||+|+++.+++..........+   ...
T Consensus       163 ~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~  242 (412)
T d1yaaa_         163 LNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLST  242 (412)
T ss_dssp             HHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTT
T ss_pred             chhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhcccc
Confidence            99999999877778899999999999999999999999999999999999999999999987421111111111   234


Q ss_pred             CCeEEEEEcCCcCcccCCCCcceEEEEeCChh----HHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHH
Q 012647          293 GMELLVAQSYSKNLGLYAERIGAMNVVCSSSD----LAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAE  368 (459)
Q Consensus       293 ~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~  368 (459)
                      .++++++.||||.|+++|||+||+++.....+    ..+.+........+..+.+++.++|.++..++.++.+.++|.++
T Consensus       243 ~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~  322 (412)
T d1yaaa_         243 VSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKD  322 (412)
T ss_dssp             TCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             CCCeEEEEecCCccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHH
Confidence            57899999999999999999999976222111    12223333444556778899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHH
Q 012647          369 MEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLA  448 (459)
Q Consensus       369 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~  448 (459)
                      ++.+++.|+++|+.+.+.|+ ++|.+..|.++.+++|||+|++++.+++++|++++||++.||+|||++++++++|+++.
T Consensus       323 ~~~~~~~~~~~r~~l~~~L~-~~g~~~~~~~~~~~gG~F~~~~ls~e~~~~L~~e~~V~~~~g~Ris~~g~~~~~i~~l~  401 (412)
T d1yaaa_         323 MVTMSSRITKMRHALRDHLV-KLGTPGNWDHIVNQCGMFSFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVA  401 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHTCSSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTSEEEGGGCCTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HhCCCCCCceeCCCceEEEecCcCHHHHHHHHHhCCEEECCCCEEEeccCCHHHHHHHH
Confidence            99999999999999999999 99877778889999999999999999999999999999999999999998999999999


Q ss_pred             HHHHHHHhhcC
Q 012647          449 DAIIDSYHNVS  459 (459)
Q Consensus       449 ~~l~~~~~~~~  459 (459)
                      ++|+++++..+
T Consensus       402 ~ai~~v~k~~~  412 (412)
T d1yaaa_         402 KAIDEVVRFYA  412 (412)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHhhC
Confidence            99999998764

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=100.00  E-value=1.4e-61  Score=482.89  Aligned_cols=402  Identities=45%  Similarity=0.788  Sum_probs=349.0

Q ss_pred             cccCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhc-CCCCCCCCCcccHHHHHHH
Q 012647           57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GENKEYLPIEGLAAFNKVT  135 (459)
Q Consensus        57 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~Y~~~~g~~~lr~ai  135 (459)
                      |.|++++..+|++|+++++.+++++++++|||++|.|.|+++.++++|.|.+++...... ...++|+|..|.++||+++
T Consensus         4 s~~~~~~~~~~~~i~~l~~~~~~d~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lreai   83 (412)
T d1ajsa_           4 SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCA   83 (412)
T ss_dssp             CTTTTCCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHH
T ss_pred             ChhhhCCcCCCChHHHHHHHHhcCCCCCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHHH
Confidence            578899999999999999999999889999999999999999888889999988776643 3346899999999999999


Q ss_pred             HHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH-----hCCCCEEEEcCCCCcchHHHhhhCCCCeeeee-eecC
Q 012647          136 AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-----YFPGAKVLISSPTWGNHKNIFNDARVPWSEYR-YYDP  209 (459)
Q Consensus       136 a~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~-----~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~-~~~~  209 (459)
                      ++++.+.++..+.++++.+++|.|+++++..+..++..     +.|||+|++++|+|+.|...++.+|++++.++ ..++
T Consensus        84 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~~  163 (412)
T d1ajsa_          84 SRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDT  163 (412)
T ss_dssp             HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEET
T ss_pred             HHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHHcCCeEEEeeccccc
Confidence            99999999988889998888888998888876555433     36999999999999999999999999877654 4455


Q ss_pred             CCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH
Q 012647          210 KTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF  289 (459)
Q Consensus       210 ~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~  289 (459)
                      +.+..|++.+++.+....++++++++|+||||||.+++++++++|+++|++||++||+||+|.++.+++...+..+....
T Consensus       164 ~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~  243 (412)
T d1ajsa_         164 EKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF  243 (412)
T ss_dssp             TTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHH
T ss_pred             ccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhh
Confidence            66789999999888776678999999999999999999999999999999999999999999999987532222333344


Q ss_pred             HhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012647          290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEM  369 (459)
Q Consensus       290 ~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~  369 (459)
                      ....+.++++.|+||.++++|||+||+++.....+..+++...+....+..+.+++..+|.++..++.++.+..+|.+++
T Consensus       244 ~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (412)
T d1ajsa_         244 VSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNV  323 (412)
T ss_dssp             HHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred             hhhcccccccccccccccCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHH
Confidence            45667899999999999999999999977433344445555555656667778899999999999999988888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHH
Q 012647          370 EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLAD  449 (459)
Q Consensus       370 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~  449 (459)
                      +.++++++++|+.+.+.|+ +++.++.|.++.+++|||+|++++.+++++|++++||+++||+|||++++++++|+++++
T Consensus       324 ~~~~~~l~~~r~~l~~~L~-~~~~~~~~~~i~~~~G~F~~~~ls~~~v~~L~~e~gV~~vpg~Ri~~ag~~~~~i~~~a~  402 (412)
T d1ajsa_         324 KTMADRILSMRSELRARLE-ALKTPGTWNHITDQIGMFSFTGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVAT  402 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HTTCSSCCHHHHHCCSSEEECCCCHHHHHHHHHTTCEECCTTSEEEGGGCCTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-HhCCCCCeeeecCCCeEEEecCCCHHHHHHHHHhCCEEEeCCCeEEeccCCHHHHHHHHH
Confidence            9999999999999999999 988777788889999999999999999999999999999999999999889999999999


Q ss_pred             HHHHHHhhcC
Q 012647          450 AIIDSYHNVS  459 (459)
Q Consensus       450 ~l~~~~~~~~  459 (459)
                      +|++++++++
T Consensus       403 aI~~av~~~~  412 (412)
T d1ajsa_         403 SIHEAVTKIQ  412 (412)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhcC
Confidence            9999999874

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.3e-61  Score=478.95  Aligned_cols=395  Identities=44%  Similarity=0.774  Sum_probs=327.6

Q ss_pred             cCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHH
Q 012647           59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL  138 (459)
Q Consensus        59 ~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~  138 (459)
                      |++++..|+|+|+++.+.++++.++++|||++|.|+|+++.+++++.|.+++.++.++...++|+|..|.++||++++++
T Consensus         2 f~~~~~~p~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~   81 (396)
T d2q7wa1           2 FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQEL   81 (396)
T ss_dssp             CTTCCCCCC-----------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHH
T ss_pred             ccccccCCCChHHHHHHHHhccCCCCcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHH
Confidence            78899999999999999999888889999999999999998888899999999888766557899999999999999999


Q ss_pred             HhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHH
Q 012647          139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEG  218 (459)
Q Consensus       139 l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~  218 (459)
                      +.+.++....++.+..++|.|++++..++..++..+.+||.|++++|+|+.|...++.+|++++.+|+..++++..+++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~  161 (396)
T d2q7wa1          82 LFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDA  161 (396)
T ss_dssp             HHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHH
T ss_pred             HHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchHHHHHcCCeeEecccccccccccccch
Confidence            99998888888887776688888888887666666789999999999999999999999999999999877788889998


Q ss_pred             HHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012647          219 MIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (459)
Q Consensus       219 l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (459)
                      +++......++++++++++||||||.+++.+++++|+++|++|+++||+||+|+++.+++. ..........+..+++++
T Consensus       162 ~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~-~~~~~~~~~~~~~~~~~~  240 (396)
T d2q7wa1         162 LINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLE-EDAEGLRAFAAMHKELIV  240 (396)
T ss_dssp             HHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHH-HHTHHHHHHHHHCSCEEE
T ss_pred             HHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCc-cCchHhhhhhhhcccccc
Confidence            8888877777899999999999999999999999999999999999999999999998631 112233334456778999


Q ss_pred             EEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012647          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  378 (459)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  378 (459)
                      +.|+||.++++|||+||+++.....+....+........+..+++++..+|.++..++.++.....|+++++++++++++
T Consensus       241 ~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (396)
T d2q7wa1         241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQR  320 (396)
T ss_dssp             EEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHH
T ss_pred             cccccccccccCCCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999976222222233333333334456677899999999999999998888899999999999999


Q ss_pred             HHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHHHHHHH
Q 012647          379 VRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       379 ~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~l~~~~  455 (459)
                      +++.+.+.|+ ++|.+.+|.++.+++|+|+|++++.+++++|++++||+++||||||++++++++|++++++|++++
T Consensus       321 ~r~~l~~~L~-~~~~~~~~~~~~~~~G~F~~~~l~~e~~~~L~~e~gV~~~~g~Ri~~a~l~~~~i~~~~~ai~~v~  396 (396)
T d2q7wa1         321 MRQLFVNTLQ-EKGANRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL  396 (396)
T ss_dssp             HHHHHHHHHH-HTTCCSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHH-HhCCCCCcceecCCCeEEEeeCCCHHHHHHHHHhCCEEECCCCEEEecCCCHHHHHHHHHHHHHhC
Confidence            9999999999 998777788889999999999999999999999999999999999999999999999999999874

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.8e-61  Score=479.87  Aligned_cols=395  Identities=42%  Similarity=0.733  Sum_probs=339.5

Q ss_pred             cCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhc-CCCCCCCCCcccHHHHHHHHH
Q 012647           59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GENKEYLPIEGLAAFNKVTAE  137 (459)
Q Consensus        59 ~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~Y~~~~g~~~lr~aia~  137 (459)
                      |++++..|.|||+++++.+++++++++|||++|.|.|+++.+++++.|.+|...+... ...+.|+|..|.++||+++++
T Consensus         2 ~~~~~~~~~dpi~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~   81 (397)
T d3tata_           2 FQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAP   81 (397)
T ss_dssp             CCCCCCCCCCTTTTHHHHHHHSCCSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHH
T ss_pred             cccCCCCCCCcHHHHHHHHhcCCCCCcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHH
Confidence            7899999999999999999999999999999999999988888889999998776543 334679999999999999999


Q ss_pred             HHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHH
Q 012647          138 LLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFE  217 (459)
Q Consensus       138 ~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e  217 (459)
                      ++.+.++..+++++|++.++.+++++..+...+...+.|||+|++++|+|+.|...++.+|++++.+|+..++++..|++
T Consensus        82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~  161 (397)
T d3tata_          82 LLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFN  161 (397)
T ss_dssp             HHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCHH
T ss_pred             HHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHHHHHHcCCEEEEEecchhhccccchH
Confidence            99999999899999988333344434333333444578999999999999999999999999999999987778889999


Q ss_pred             HHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEE
Q 012647          218 GMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (459)
Q Consensus       218 ~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i  297 (459)
                      .+.+.+...++++++++++|||||||.++|.+++++|+++|++|+++||+||+|+++.+++ +.............++++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~-~~~~~~~~~~~~~~~~~i  240 (397)
T d3tata_         162 DLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGM-EEDAYAIRAIASAGLPAL  240 (397)
T ss_dssp             HHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCH-HHHHHHHHHHHTTTCCCE
T ss_pred             HHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCC-cccchhhhhhhhcCCceE
Confidence            9999888777788999999999999999999999999999999999999999999999863 111223333334567899


Q ss_pred             EEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012647          298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  377 (459)
Q Consensus       298 ~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  377 (459)
                      ++.||||.++++|||+||+++.....+...++........+..+++++...|.++..++.++.+..+|.++++.++++++
T Consensus       241 ~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (397)
T d3tata_         241 VSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRIL  320 (397)
T ss_dssp             ECBCCHHHHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCcccccccCccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999997744444445555555555666777788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHHHHHHH
Q 012647          378 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       378 ~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~l~~~~  455 (459)
                      ++++.+.+.|. +.+.++.|.+..+++|||+|++++.+++++|++++||++.||+||||+++++++|++++++|++++
T Consensus       321 ~~r~~l~~~L~-~~~~~~~~~~~~~~~G~F~~~~ls~e~~~~L~~e~~V~l~~g~Ri~~a~~~~~~i~~~~~ai~~v~  397 (397)
T d3tata_         321 AMRQELVKVLS-TEMPERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAVM  397 (397)
T ss_dssp             HHHHHHHHTTT-TTCTTSCTTHHHHCCSSBCCCCCCHHHHHHHTTTTCEECCSSSCCBTTSCCTTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHH-HhCCCCceEEEcCCCceEEecCcCHHHHHHHHHhCCEEeCCCCEEEeccCCHHHHHHHHHHHHHhC
Confidence            99999999999 876556688889999999999999999999999999999999999999999999999999998874

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=2e-59  Score=464.81  Aligned_cols=391  Identities=37%  Similarity=0.646  Sum_probs=334.9

Q ss_pred             cCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHH
Q 012647           59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL  138 (459)
Q Consensus        59 ~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~  138 (459)
                      +.+++..++|+|++++..+++++++++|||++|.|+|+++.++++|.|.++++++++....++|+|..|.++||++++++
T Consensus         2 ~~~~~~~~~d~i~~l~~~~~~d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~   81 (394)
T d2ay1a_           2 LGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGEL   81 (394)
T ss_dssp             GGGCCCCCCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHH
T ss_pred             CCCCCCCCCChHHHHHHHHhCCCCCCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHH
Confidence            45778889999999999999999999999999999999999888899999999988765557899999999999999999


Q ss_pred             HhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHH
Q 012647          139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEG  218 (459)
Q Consensus       139 l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~  218 (459)
                      +.+.++....++.+ +  |.||+++..++..++....+||.|++++|+|+.|...++.+|++++.+|+.+++++..+.+.
T Consensus        82 ~~~~~~~~~~~~~~-~--~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~  158 (394)
T d2ay1a_          82 ILGDGLKSETTATL-A--TVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEG  158 (394)
T ss_dssp             HHGGGCCGGGEEEE-E--EEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHH
T ss_pred             Hhccccccccccce-e--ccCchHHHHHHHHHhhhcCCceEEEEecccccchHHHHHHcCCEEEEecccchhcccccchh
Confidence            98776655444433 3  57777776666556666789999999999999999999999999999999877788888999


Q ss_pred             HHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012647          219 MIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (459)
Q Consensus       219 l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (459)
                      +++.....+++++++++++||||||.+++.+++++|+++|++|+++||+||+|+++.+++. ..............++++
T Consensus       159 ~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~-~~~~~~~~~~~~~~~~~~  237 (394)
T d2ay1a_         159 MKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLE-EDAAGTRLIASRIPEVLI  237 (394)
T ss_dssp             HHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHH-HHHHHHHHHHHHCSSEEE
T ss_pred             HHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhccccc-ccchhhhhhhhhcccccc
Confidence            9888887777899999999999999999999999999999999999999999999998631 111122222335567899


Q ss_pred             EEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012647          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN  378 (459)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  378 (459)
                      +.|+||.++++|||+||+++.....+....+...+.......+++++...|.++...+.++.+..+|.++++.+++++++
T Consensus       238 ~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  317 (394)
T d2ay1a_         238 AASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLR  317 (394)
T ss_dssp             EEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccCCcccccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999977433334344444445555556677888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHHHHHH
Q 012647          379 VRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDS  454 (459)
Q Consensus       379 ~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~l~~~  454 (459)
                      +|+.+.+.|+ +++.+..|.++.+++|||+|++++.+++++|++++||++.||+||||+++++++|++++++|.++
T Consensus       318 ~r~~l~~~L~-~~~~~~~~~~~~~~~G~F~~~~ls~~~~~~L~~~~~V~~~~g~Ri~~a~l~~~~i~~l~~ai~~v  392 (394)
T d2ay1a_         318 LREQLAGELR-DLSGSDRFGFVAEHRGMFSRLGATPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIEV  392 (394)
T ss_dssp             HHHHHHHHHH-HHHTSSTTTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HhCCCCceeeECCCceeEEecCcCHHHHHHHHHhCCEEecCCCEEEecCCCHHHHHHHHHHHHHh
Confidence            9999999999 88766668888999999999999999999999999999999999999999999999999999875

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=100.00  E-value=1.1e-55  Score=436.60  Aligned_cols=364  Identities=16%  Similarity=0.169  Sum_probs=299.6

Q ss_pred             CCCCCCCCcc---chhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHH
Q 012647           61 GVTMAPPDPI---LGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE  137 (459)
Q Consensus        61 ~~~~~~~~~i---~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~  137 (459)
                      ++...+++++   .+..+++++. +.++|||++|+|    .+++ |+.+++++.+.++++. ++|++..|.++||+++++
T Consensus         6 ~~~~~~~s~~~~i~~~a~~~~~~-g~~vi~l~~G~p----~~~~-p~~v~~a~~~~~~~~~-~~Y~~~~G~~~lR~aia~   78 (388)
T d1j32a_           6 RVESVSPSMTLIIDAKAKAMKAE-GIDVCSFSAGEP----DFNT-PKHIVEAAKAALEQGK-TRYGPAAGEPRLREAIAQ   78 (388)
T ss_dssp             HHHTSCCCSSTTTHHHHHHHHTT-TCCCEECCCSSC----SSCC-CHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHH
T ss_pred             HhhcCCcCHHHHHHHHHHHHHHC-CCCeEECCCCCC----CCCC-CHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHH
Confidence            3344445554   4444455544 468999999998    5654 8999999999887764 789999999999999999


Q ss_pred             HHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHH
Q 012647          138 LLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFE  217 (459)
Q Consensus       138 ~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e  217 (459)
                      ++...+|..+++++|++  |+|+++++.++  +...+.|||+|++++|+|..|...++..|++++.++...++++.+|++
T Consensus        79 ~~~~~~g~~~~~~~i~i--t~G~~~al~~~--~~~~~~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~  154 (388)
T d1j32a_          79 KLQRDNGLCYGADNILV--TNGGKQSIFNL--MLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPE  154 (388)
T ss_dssp             HHHHHHCCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHH
T ss_pred             HHHHhcccCCCCceEEE--cCCHHHHHHHH--HHHHhCCCCEEEEcCCCcHHHHHHHHHhcCeEEEEecccccccCCCHH
Confidence            99988899999999999  99999999998  444478999999999999999999999999999999877778899999


Q ss_pred             HHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH-hcCCeE
Q 012647          218 GMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRGMEL  296 (459)
Q Consensus       218 ~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~  296 (459)
                      ++++++++   ++++++++|||||||.+++.+++++|+++|++||++||+||+|..+.+++.  ...++.... ...+++
T Consensus       155 ~l~~~~~~---~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~--~~~s~~~~~~~~~~~~  229 (388)
T d1j32a_         155 QIRQAITP---KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDA--QHLSIGAASPEAYERS  229 (388)
T ss_dssp             HHHHHCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSCHHHHHTE
T ss_pred             HHHHhCCC---CCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCC--CCCCHHHhCcccccce
Confidence            99999875   788899999999999999999999999999999999999999999988642  222221111 122479


Q ss_pred             EEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012647          297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI  376 (459)
Q Consensus       297 i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~  376 (459)
                      ++++||||.|+++|+|+||+++   +++.++.+    .........+++..+|.++...+.+.      .+++++.++.+
T Consensus       230 i~~~S~SK~~~~~GlRvG~~~~---~~~~~~~~----~~~~~~~~~~~~~~~q~a~~~~~~~~------~~~~~~~~~~~  296 (388)
T d1j32a_         230 VVCSGFAKTYAMTGWRVGFLAG---PVPLVKAA----TKIQGHSTSNVCTFAQYGAIAAYENS------QDCVQEMLAAF  296 (388)
T ss_dssp             EEEEESTTTTTCTTTCCEEEEC---CHHHHHHH----HHHHHTTTCSCCHHHHHHHHHHHHSC------SHHHHHHHHHH
T ss_pred             eEecCChhhhhcchhHeEEEEE---CHHHHHHH----HHhhhhccccccHHHHHHHhhcccch------HHHHHHHHHHH
Confidence            9999999999999999999865   88744443    33333445578888888887776543      34578899999


Q ss_pred             HHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC-----C-HHHHHHHHhcccEEEcCCC--------cEEEccCChh
Q 012647          377 KNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----N-KAQSDNMTNKWHVYMTKDG--------RISLAGLSLA  442 (459)
Q Consensus       377 ~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-----~-~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e  442 (459)
                      +++++.+.+.|+ +++   ++.+..|+||||+|+.+     + .+++++|++++||.+.||.        ||||+. +++
T Consensus       297 ~~~~~~~~~~l~-~~~---g~~~~~p~gg~~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~~-~~e  371 (388)
T d1j32a_         297 AERRRYMLDALN-AMP---GLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYAT-DLD  371 (388)
T ss_dssp             HHHHHHHHHHHH-TCT---TCBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCS-CHH
T ss_pred             HHHHHHHHHHHH-hCC---CCEecCCCceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEeC-CHH
Confidence            999999999999 763   27888999999999865     2 3668899988999999972        999987 899


Q ss_pred             hHHHHHHHHHHHHhhc
Q 012647          443 KCEYLADAIIDSYHNV  458 (459)
Q Consensus       443 ~i~~~~~~l~~~~~~~  458 (459)
                      ++++++++|+++++.+
T Consensus       372 ~l~~al~rl~~~l~~l  387 (388)
T d1j32a_         372 TIKRGMERLEKFLHGI  387 (388)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999999875

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.5e-54  Score=428.72  Aligned_cols=361  Identities=18%  Similarity=0.178  Sum_probs=299.8

Q ss_pred             CCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCC
Q 012647           64 MAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGAD  143 (459)
Q Consensus        64 ~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~  143 (459)
                      ..+++.|+++.+....  .+++|+|+.|+|    ++++ |+.|++++.++++++. .+|+|..|.++||++||+++...+
T Consensus         8 ~~~~s~ir~~~~~~~~--~~dvi~l~~g~p----~~~~-p~~v~~~~~~a~~~~~-~~Y~~~~G~~~lr~aia~~~~~~~   79 (388)
T d1gdea_           8 LVSASEIRKLFDIAAG--MKDVISLGIGEP----DFDT-PQHIKEYAKEALDKGL-THYGPNIGLLELREAIAEKLKKQN   79 (388)
T ss_dssp             HSCCCHHHHHHHHHHH--CTTCEECCCCSC----CSCC-CHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHHHHH
T ss_pred             hCCccHHHHHHHHHhC--CCCeEECCCCCC----CCCC-CHHHHHHHHHHHhcCc-cCCCCCcCCHHHHHHHHHHHHhhc
Confidence            3457788888775543  468999999998    5554 8999999999987654 789999999999999999986544


Q ss_pred             CC-ccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHH
Q 012647          144 NS-VLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIAD  222 (459)
Q Consensus       144 ~~-~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~  222 (459)
                      +. ...+++|++  |+|+++++.++  +...+.|||+|++++|+|..|...++..|++++.+|+++++++++|++++++.
T Consensus        80 ~~~~~~~~~i~~--t~G~~~~l~~~--~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~  155 (388)
T d1gdea_          80 GIEADPKTEIMV--LLGANQAFLMG--LSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKY  155 (388)
T ss_dssp             CCCCCTTTSEEE--ESSTTHHHHHH--HTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHH
T ss_pred             cccCCChheeee--ccCcchHHHHH--HHHhcCCCCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHHHHh
Confidence            43 344678999  99999999998  44457799999999999999999999999999999998777899999999998


Q ss_pred             HHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcC
Q 012647          223 IKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY  302 (459)
Q Consensus       223 i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~  302 (459)
                      +++   +++++++||||||||.+++.+++++|+++|++|+++||+||+|.++.+++.  ...++..+....+++++++||
T Consensus       156 ~~~---~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~  230 (388)
T d1gdea_         156 VTD---KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDA--RHYSIASLDGMFERTITVNGF  230 (388)
T ss_dssp             CCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSTTCGGGEEEEEES
T ss_pred             Ccc---CCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccC--CCCChhhccCCCCeEEEEeCC
Confidence            875   788999999999999999999999999999999999999999999987642  222332332334689999999


Q ss_pred             CcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Q 012647          303 SKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQK  382 (459)
Q Consensus       303 SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (459)
                      ||.|+++|+|+||+++   +++..+.+..    .......+++...|.++..++.++.+    .++++..++.++++++.
T Consensus       231 SK~~~~~GlR~G~ii~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~  299 (388)
T d1gdea_         231 SKTFAMTGWRLGFVAA---PSWIIERMVK----FQMYNATCPVTFIQYAAAKALKDERS----WKAVEEMRKEYDRRRKL  299 (388)
T ss_dssp             TTTTTCGGGCCEEEEC---CHHHHHHHHH----HHHTTTCSCCHHHHHHHHHHHTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred             hhhccCccccEEEEEe---eccchhhhhh----ccccccccccccchhhHHHHHhhccc----hhHHHHHHHHHHHhhhh
Confidence            9999999999999966   7774444433    33344557888888888888887654    45678888999999999


Q ss_pred             HHHHHhhccCCCCCcccccCCcceeeecCC-----C-HHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHH
Q 012647          383 LFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----N-KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEY  446 (459)
Q Consensus       383 l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-----~-~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~  446 (459)
                      +.+.|. +.+    +.+..|+||+|+|+.+     + .++++++++++||.++||.          ||||+. ++|++++
T Consensus       300 ~~~~l~-~~~----~~~~~p~gg~fl~~~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~~-~~e~l~~  373 (388)
T d1gdea_         300 VWKRLN-EMG----LPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT-AYEKLEE  373 (388)
T ss_dssp             HHHHHH-HTT----CCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS-CHHHHHH
T ss_pred             hhhhhh-hcc----ccccCCCceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEecC-CHHHHHH
Confidence            999999 876    5778899999999854     3 3567888988999999871          999986 8899999


Q ss_pred             HHHHHHHHHhhc
Q 012647          447 LADAIIDSYHNV  458 (459)
Q Consensus       447 ~~~~l~~~~~~~  458 (459)
                      ++++|++++++.
T Consensus       374 al~rL~~~l~e~  385 (388)
T d1gdea_         374 AMDRMERVLKER  385 (388)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999999875

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.5e-54  Score=427.69  Aligned_cols=361  Identities=16%  Similarity=0.158  Sum_probs=296.6

Q ss_pred             CCCCCCCCCccchhHHH---hhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHH
Q 012647           60 EGVTMAPPDPILGVSEA---FKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTA  136 (459)
Q Consensus        60 ~~~~~~~~~~i~~~~~~---~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia  136 (459)
                      +++...+|+++.++.+.   ++.. +.++|+|+.|+|    .+++ |+.+++++.++++++. ++|++..|.++||++++
T Consensus         6 ~r~~~~~~s~~~~i~~~a~~~~~~-G~~vi~l~~g~p----~~~~-p~~i~~a~~~~~~~~~-~~Y~~~~G~~~lR~~ia   78 (382)
T d1b5pa_           6 RRVQAMKPSATVAVNAKALELRRQ-GVDLVALTAGEP----DFDT-PEHVKEAARRALAQGK-TKYAPPAGIPELREALA   78 (382)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHT-TCCCEECCCSSC----SSCC-CHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhC-CCCeEECCCCCC----CCCC-CHHHHHHHHHHHhcCC-cCCCCCCCCHHHHHHHH
Confidence            34445567777766654   3433 578999999998    5665 8999999999887764 79999999999999999


Q ss_pred             HHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCH
Q 012647          137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF  216 (459)
Q Consensus       137 ~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~  216 (459)
                      +++...++..+++++|++  |+|+++++.++  +...+.+||+|++++|+|..|...++.+|++++.+|+.+++++.+|+
T Consensus        79 ~~~~~~~~~~~~~~~i~i--t~G~~~al~~~--~~~l~~~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~  154 (382)
T d1b5pa_          79 EKFRRENGLSVTPEETIV--TVGGSQALFNL--FQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDP  154 (382)
T ss_dssp             HHHHHTTCCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCH
T ss_pred             hhhhhhccccccccccee--cCCHHHHHHHH--HHHhCCCCCEEEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCH
Confidence            999898999999999999  99999999998  44447799999999999999999999999999999987777889999


Q ss_pred             HHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeE
Q 012647          217 EGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL  296 (459)
Q Consensus       217 e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~  296 (459)
                      +.+++++++   +++++++||||||||.+++.+++++|+++|++||++||+||+|.++.+++..  ..+.   ....+++
T Consensus       155 ~~l~~~~~~---~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~--~~~~---~~~~~~~  226 (382)
T d1b5pa_         155 ERVRRAITP---RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEH--FSPG---RVAPEHT  226 (382)
T ss_dssp             HHHHTTCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCC--CCGG---GTCTTTE
T ss_pred             HHHHHhCCC---CCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCC--CCHH---HcCCCCE
Confidence            999988865   7888999999999999999999999999999999999999999999986422  1111   2234689


Q ss_pred             EEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012647          297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI  376 (459)
Q Consensus       297 i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~  376 (459)
                      ++++||||.|+++|+|+||+++   +++.++.+    .........+++...|.++...+.+....   +..++..++.+
T Consensus       227 i~~~s~SK~~~~~GlR~G~~~~---~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  296 (382)
T d1b5pa_         227 LTVNGAAKAFAMTGWRIGYACG---PKEVIKAM----ASVSRQSTTSPDTIAQWATLEALTNQEAS---RAFVEMAREAY  296 (382)
T ss_dssp             EEEEESTTTTTCGGGCCEEEEC---CHHHHHHH----HHHHHTTTCSCCHHHHHHHHHHHHCHHHH---HHHHHHHHHHH
T ss_pred             EEEecchhhccCcHhheEEEEE---CHHHHHHH----HHHHHhcccCcccccccccccccccccch---hHHHHHHHHHH
Confidence            9999999999999999999865   88744443    33333445577888887777666554443   44567888999


Q ss_pred             HHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC-----CHHHHHHHHhcccEEEcCCC--------cEEEccCChhh
Q 012647          377 KNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----NKAQSDNMTNKWHVYMTKDG--------RISLAGLSLAK  443 (459)
Q Consensus       377 ~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e~  443 (459)
                      +++++.+.+.+. +.|    +++..|+||+|+|+++     +...+.+++.++||.+.||.        ||+|+. ++|+
T Consensus       297 ~~~~~~~~~~l~-~~g----~~~~~p~gg~~~~~~~~~~~~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis~~~-~~e~  370 (382)
T d1b5pa_         297 RRRRDLLLEGLT-ALG----LKAVRPSGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYAT-SEEN  370 (382)
T ss_dssp             HHHHHHHHHHHH-HHT----CCBCCCSBTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEECCS-CHHH
T ss_pred             HhhhhHHHHHHh-hcC----CeEecCCceEEEeEeCCCCCCCHHHHHHHHHHCCEEEEeCcccCCCCeEEEEEcC-CHHH
Confidence            999999999999 887    5788899999999855     34555444555799999982        999987 8899


Q ss_pred             HHHHHHHHHHHH
Q 012647          444 CEYLADAIIDSY  455 (459)
Q Consensus       444 i~~~~~~l~~~~  455 (459)
                      +++++++|++++
T Consensus       371 l~~al~rl~~~L  382 (382)
T d1b5pa_         371 LRKALERFARVL  382 (382)
T ss_dssp             HHHHHHHGGGGC
T ss_pred             HHHHHHHHHHhC
Confidence            999999998764

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=9.1e-53  Score=416.50  Aligned_cols=356  Identities=17%  Similarity=0.153  Sum_probs=294.0

Q ss_pred             HHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceE
Q 012647           74 SEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVA  153 (459)
Q Consensus        74 ~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~  153 (459)
                      .+++++. +.++|+|+.|+|.+. .+++ |+.+++++.+.++.+. ++|++..|.++||++|++++...+|..+++++|+
T Consensus        22 a~~l~~~-G~~vi~l~~G~P~~~-df~~-p~~i~~a~~~a~~~~~-~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~   97 (395)
T d1xi9a_          22 ARELEKK-GIKVIRLNIGDPVKF-DFQP-PEHMKEAYCKAIKEGH-NYYGDSEGLPELRKAIVEREKRKNGVDITPDDVR   97 (395)
T ss_dssp             HHHHHHT-TCCCEECCCCCGGGT-TCCC-CHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEE
T ss_pred             HHHHHHC-CCCeEECCCCCCCCC-CCCC-CHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHhhhhcccccccccccc
Confidence            3445544 568999999998433 3444 8899999999987654 7899999999999999999999889999999999


Q ss_pred             EeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEE
Q 012647          154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL  233 (459)
Q Consensus       154 ~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~i  233 (459)
                      +  |+|+++++.++  +...+.+||+|++++|+|..|...++.+|++++.+|+..++++.+|++.+++.+.+   +++++
T Consensus        98 i--~~G~~~~~~~~--~~~~~~~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~---~~~~v  170 (395)
T d1xi9a_          98 V--TAAVTEALQLI--FGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITD---RTKAI  170 (395)
T ss_dssp             E--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCT---TEEEE
T ss_pred             c--ccccchhhhhh--hhhhcCCCCEEEEcCCccccchhhhhhcCCEEEEEeccccccccchHHHHHHhhcc---cccEE
Confidence            9  99999999998  44457799999999999999999999999999999988777899999999998875   78899


Q ss_pred             EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc
Q 012647          234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI  313 (459)
Q Consensus       234 i~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri  313 (459)
                      +++|||||||.+++.+++++|+++|++|+++||+||+|.++.+++..   .+... ....+++++++||||.|++||||+
T Consensus       171 ~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~---~~~~~-~~~~~~vi~~~S~SK~~~~~GlRv  246 (395)
T d1xi9a_         171 AVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEH---ISPGS-LTKDVPVIVMNGLSKVYFATGWRL  246 (395)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCC---CCHHH-HCSSSCEEEEEESTTTTCCGGGCC
T ss_pred             EecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccc---cchhh-cCCCCCEEEEeCcchhcccchhhc
Confidence            99999999999999999999999999999999999999999876422   12212 345568999999999999999999


Q ss_pred             ceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012647          314 GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  393 (459)
Q Consensus       314 G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  393 (459)
                      ||+++ ..+......+.+...... ....+++.++|.++...+.+.      .+++++.++.|+++++.+.+.|+ +++.
T Consensus       247 G~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~~~  317 (395)
T d1xi9a_         247 GYMYF-VDPENKLSEVREAIDRLA-RIRLCPNTPAQFAAIAGLTGP------MDYLKEYMKKLKERRDYIYKRLN-EIPG  317 (395)
T ss_dssp             EEEEE-ECTTCTTHHHHHHHHHHH-HHTCCSCSHHHHHHHHHHHSC------CHHHHHHHHHHHHHHHHHHHHHH-TSTT
T ss_pred             EeeEe-cCHHHHHHHHHHHHHHhh-cCCCCcCHHHHHHHHHHhcCC------HHHHHHHHHHHHHHHHHHHHHHH-hCCC
Confidence            99864 344444444444333222 223467788888887777654      23478889999999999999999 8752


Q ss_pred             CCCcccccCCcceeeecCC-------CHHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHHHh
Q 012647          394 GKDWSFILRQIGMFSFTGL-------NKAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       394 ~~~~~~~~~~~g~f~~~~l-------~~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~~~  456 (459)
                         +.+..|+||+|+|+.+       +.+++.++++++||.+.||.          |||++. ++|++++++++|+++++
T Consensus       318 ---~~~~~p~gg~~~~~~l~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~-~~e~l~eal~rl~~~l~  393 (395)
T d1xi9a_         318 ---ISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLP-PIEILEEAMDRFEKFMK  393 (395)
T ss_dssp             ---EECCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCS-CHHHHHHHHHHHHHHHH
T ss_pred             ---ceecCCCeeEEEeEECCCCCCCCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHh
Confidence               5778899999999743       34678899988999999972          999987 89999999999999987


Q ss_pred             h
Q 012647          457 N  457 (459)
Q Consensus       457 ~  457 (459)
                      +
T Consensus       394 e  394 (395)
T d1xi9a_         394 E  394 (395)
T ss_dssp             H
T ss_pred             c
Confidence            5

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=2.1e-51  Score=409.32  Aligned_cols=369  Identities=15%  Similarity=0.163  Sum_probs=287.5

Q ss_pred             CCccchhHHHhhhCCC-CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCC--
Q 012647           67 PDPILGVSEAFKADTD-EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGAD--  143 (459)
Q Consensus        67 ~~~i~~~~~~~~~~~~-~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~--  143 (459)
                      ..||+.+.+.++..++ .++|+|++|+| |......+++.+.+++.+.++....++|+|..|.++||++||+++.+.+  
T Consensus        13 ~~pir~~~~~~~~~~~~~~vI~L~~G~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~   91 (412)
T d1bw0a_          13 FNPIRTVSDNAKPSPSPKPIIKLSVGDP-TLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVH   91 (412)
T ss_dssp             CCHHHHHHHTCCCCCSCSCCEECCCCCT-TTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCC
T ss_pred             ccHHHHHHHhcCCCCCCCCcEECcCCCC-CCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCc
Confidence            4567777766665443 37899999998 4333333568888999888766555789999999999999999987653  


Q ss_pred             ----CCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHH
Q 012647          144 ----NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGM  219 (459)
Q Consensus       144 ----~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l  219 (459)
                          +..+++++|++  |+|+++++.++  +...+.+||+|++++|+|+.|...++.+|++++.+|+++++++.+|++.+
T Consensus        92 ~~~~~~~~~~~~I~i--t~G~~~al~~~--~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~l  167 (412)
T d1bw0a_          92 KEELKSTIVKDNVVL--CSGGSHGILMA--ITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEI  167 (412)
T ss_dssp             STTTGGGCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHH
T ss_pred             ccccCCCCCCCeEEE--ecccccchhhh--hhhhhccccceeeeeccchhhhhhhhccCccccccccccccccchhhHHH
Confidence                45678999999  99999999998  44457899999999999999999999999999999998777889999999


Q ss_pred             HHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH-HHHHhcCCeEEE
Q 012647          220 IADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV-RLFATRGMELLV  298 (459)
Q Consensus       220 ~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~-~~~~~~~~~~i~  298 (459)
                      ++.+.+   .+++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.+++........ ....+...++++
T Consensus       168 ~~~~~~---~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (412)
T d1bw0a_         168 RRLKDD---KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVI  244 (412)
T ss_dssp             HHHCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEE
T ss_pred             Hhhhhc---cccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCcccccccccccccccccc
Confidence            988765   7889999999999999999999999999999999999999999999987532111100 001123357899


Q ss_pred             EEcCCcCcccCCCCcceEEEEeCChhH-HHHHHHHHHhhccccccCCchHHHHHHHHH-hCChhhHHHHHHHHHHHHHHH
Q 012647          299 AQSYSKNLGLYAERIGAMNVVCSSSDL-AARVKSQLKRLARPMYSNPPVHGARIVANV-VGNPALFDEWKAEMEMMAGRI  376 (459)
Q Consensus       299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-L~~~~~~~~~~~~~~~~~~~~  376 (459)
                      ++||||.++++|||+||+++  .++.. ...++......... ..+++...|..+... +.+.      ++++.++++.+
T Consensus       245 ~~s~SK~~~~~G~RvG~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  315 (412)
T d1bw0a_         245 LGGTAKNLVVPGWRLGWLLY--VDPHGNGPSFLEGLKRVGML-VCGPCTVVQAALGEALLNTP------QEHLDQIVAKI  315 (412)
T ss_dssp             EEESTTTTSCGGGCCEEEEE--ECTTCSCHHHHHHHHHHHHH-HTCSCHHHHHHHHHHHHSSC------HHHHHHHHHHH
T ss_pred             ccccCccCccCCCCcccccc--cchhhcchhhhhhhcccccc-ccCCchhhhhhccccccccc------ccccccccchh
Confidence            99999999999999999965  22110 11122222222222 224455555544333 3332      35578999999


Q ss_pred             HHHHHHHHHHHhhcc-CCCCCcccccCCcceeeecCC----------CHHHHHHHHhcccEEEcCC------C--cEEEc
Q 012647          377 KNVRQKLFDSLSAKD-KSGKDWSFILRQIGMFSFTGL----------NKAQSDNMTNKWHVYMTKD------G--RISLA  437 (459)
Q Consensus       377 ~~~~~~l~~~L~~~~-g~~~~~~~~~~~~g~f~~~~l----------~~~~~~~ll~~~gI~v~~g------g--Ris~~  437 (459)
                      +++++.+.+.|. +. |    +.+..|+||+|+|+.+          +.+++++|++++||.+.||      |  ||||+
T Consensus       316 ~~~r~~~~~~l~-~~~g----~~~~~p~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis~~  390 (412)
T d1bw0a_         316 EESAMYLYNHIG-ECIG----LAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTT  390 (412)
T ss_dssp             HHHHHHHHHHHT-TSTT----EEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC
T ss_pred             HHHHHHHHHHHH-HhcC----ceecCCCCceEEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEc
Confidence            999999999998 54 4    6888999999999643          3467899999899999997      2  99998


Q ss_pred             cCChhhHHHHHHHHHHHHhhc
Q 012647          438 GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       438 ~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      . +++++++++++|++++++.
T Consensus       391 ~-~~e~l~eal~Rl~~~l~~~  410 (412)
T d1bw0a_         391 R-PVEVYREAVERIKAFCQRH  410 (412)
T ss_dssp             S-CHHHHHHHHHHHHHHHHHH
T ss_pred             C-CHHHHHHHHHHHHHHHHhc
Confidence            7 8999999999999999864

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=100.00  E-value=4.1e-51  Score=407.77  Aligned_cols=370  Identities=13%  Similarity=0.036  Sum_probs=294.2

Q ss_pred             ccCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCCCCCCcccHHHHHHH
Q 012647           58 RFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVT  135 (459)
Q Consensus        58 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~ai  135 (459)
                      +..++...+++...+..+...   .+++|||+.|.|    .+++ |+.+++++.+++...  ..++|++..|.++||++|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~---~~~~I~L~~G~P----d~~~-p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReai   75 (418)
T d2r5ea1           4 LPKRYQGSTKSVWVEYIQLAA---QYKPLNLGQGFP----DYHA-PKYALNALAAAANSPDPLANQYTRGFGHPRLVQAL   75 (418)
T ss_dssp             CCGGGTTCCCCHHHHHHHHHH---HHCCEECSSSCC----SSCC-CHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHH
T ss_pred             hhhhhcCCCCCHHHHHHHHhc---CCCCEEccCCCC----CCCC-CHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHH
Confidence            345566666766656554333   247899999998    4554 788999999988543  236799999999999999


Q ss_pred             HHHHhcCCCCcccc-CceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCC----
Q 012647          136 AELLFGADNSVLKE-QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK----  210 (459)
Q Consensus       136 a~~l~~~~~~~~~~-~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~----  210 (459)
                      |+++.+.+|..++| ++|++  |+|+++++.++  +...+.+||.|++++|+|+.|...+...|++++.++++++.    
T Consensus        76 A~~~~~~~g~~~~p~~~I~i--t~G~~~al~~~--~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~  151 (418)
T d2r5ea1          76 SKLYSQLVDRTINPMTEVLV--TVGAYEALYAT--IQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGT  151 (418)
T ss_dssp             HHHHHHHHTSCCCTTTSEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSC
T ss_pred             HHHHHHHhCCCCCccceEEE--cCCCchhhhhh--hhhccccccceeccccccchhhHHHHHcCCeEEEEEecccccccc
Confidence            99998888888885 78999  99999999998  44457899999999999999999999999999999986443    


Q ss_pred             ----CCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH
Q 012647          211 ----TVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (459)
Q Consensus       211 ----~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~  286 (459)
                          .+..+++.+.+....   +++++++|+||||||.+++.+++++|+++|++||++||+||+|..+.+++..  ..++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~---~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~--~~s~  226 (418)
T d2r5ea1         152 ISSADWVLDNNELEALFNE---KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFE--HIRI  226 (418)
T ss_dssp             EEGGGEECCHHHHHHHCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC--CCCG
T ss_pred             hhhhhhhhhHHHHhhhhhc---cccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCc--cccc
Confidence                245677887776654   8889999999999999999999999999999999999999999999886432  2233


Q ss_pred             HHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhh-HHHH
Q 012647          287 RLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPAL-FDEW  365 (459)
Q Consensus       287 ~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~-~~~~  365 (459)
                      ..+.+..+++++++||||.+++||+|+||+++   +++.    ++.+.........+++.+.|.+++..+..... ....
T Consensus       227 ~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~---~~~~----i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~  299 (418)
T d2r5ea1         227 CTLPGMWERTITIGSAGKTFSLTGWKIGWAYG---PEAL----LKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSP  299 (418)
T ss_dssp             GGSTTTGGGEEEEEEHHHHTTCGGGCCEEEES---CHHH----HHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTST
T ss_pred             cccccccceeeeeecCCccccCCCcccccccc---cchh----hhhhhhcccccccccccchhhhccccccccccccccc
Confidence            23334456899999999999999999999865   7774    44444444444557778888777655532211 1111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC-----------------CHHHHHHHHhcccEEE
Q 012647          366 KAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----------------NKAQSDNMTNKWHVYM  428 (459)
Q Consensus       366 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-----------------~~~~~~~ll~~~gI~v  428 (459)
                      +++++++++.|+.+++.+.+.|+ ++|    +++..|+||||+|+++                 +.+++++|++++||.+
T Consensus       300 ~~~~~~~~~~~~~~r~~l~~~L~-~~g----~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v  374 (418)
T d2r5ea1         300 ECYFNSISGELMAKRDYMASFLA-EVG----MNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQG  374 (418)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHH-HTT----CEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEEC
T ss_pred             hhhHHHHHHHHHHhhhhHHhhHh-hcC----CcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEE
Confidence            34578899999999999999999 887    6889999999999743                 2366889999899999


Q ss_pred             cCC-------------C--cEEEccCChhhHHHHHHHHHHHHhh
Q 012647          429 TKD-------------G--RISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       429 ~~g-------------g--Ris~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                      +||             |  ||||+. ++|++++++++|++.+..
T Consensus       375 ~PG~~F~~~~~~~~g~~~iRis~~~-~~e~l~~a~~rl~~~lg~  417 (418)
T d2r5ea1         375 IPPSAFYSEPNKHLGEDFVRYCFFK-KDENLQKAAEILRKWKGS  417 (418)
T ss_dssp             BCGGGGSCGGGHHHHTTEEEEECCS-CHHHHHHHHHHHHHHHTC
T ss_pred             eCchhhCCCCCccCCCCEEEEEecC-CHHHHHHHHHHHHHHHcc
Confidence            997             2  999987 899999999999998753

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.4e-50  Score=396.64  Aligned_cols=349  Identities=17%  Similarity=0.155  Sum_probs=288.1

Q ss_pred             ccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccc
Q 012647           69 PILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLK  148 (459)
Q Consensus        69 ~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~  148 (459)
                      .+.+..+++++. +.++|||+.|.|    .+++ |+.+++++.+.+.++. ++|++..|.++||+++++++...++..++
T Consensus        15 ~~~~~a~~~~~~-G~~vI~l~~G~p----~~~~-p~~i~~~~~~~~~~~~-~~Y~~~~G~~~lR~aia~~~~~~~~~~~~   87 (375)
T d1o4sa_          15 ELDAKAKALIKK-GEDVINLTAGEP----DFPT-PEPVVEEAVRFLQKGE-VKYTDPRGIYELREGIAKRIGERYKKDIS   87 (375)
T ss_dssp             HHHHHHHHHHHT-TCCCEECCCSSC----SSCC-CHHHHHHHHHHHTTCC-CCCCCTTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHC-CCCeEECCCcCC----CCCC-CHHHHHHHHHHHhcCC-cCCCCCcCCHHHHHHHHhhhhhccccccc
Confidence            344444444443 468999999998    5554 8999999999887654 78999999999999999999888888999


Q ss_pred             cCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCC
Q 012647          149 EQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG  228 (459)
Q Consensus       149 ~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~  228 (459)
                      +++|++  |+|+++++.++  +...+.+||+|++++|+|+.|...+...|...+.++..+++++.+|.+.++.....   
T Consensus        88 ~~~i~~--t~G~~~al~~~--~~~l~~~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  160 (375)
T d1o4sa_          88 PDQVVV--TNGAKQALFNA--FMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG---  160 (375)
T ss_dssp             GGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT---
T ss_pred             cccccc--cCcHHHHHHHH--HHHHhCCCCEEEEccCccccchhhhhccccccccccccccccccchhHHHHHhhcc---
Confidence            999999  99999999998  44447899999999999999999999999999999988777888999988876654   


Q ss_pred             CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc
Q 012647          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (459)
Q Consensus       229 ~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  308 (459)
                      ++++++++|||||||.+++.+++++|+++|++|+++||+||+|..+.++....   ......+..+++++++||||.|++
T Consensus       161 ~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~---~~~~~~~~~~~~i~~~S~SK~~~l  237 (375)
T d1o4sa_         161 KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFT---SILDVSEGFDRIVYINGFSKSHSM  237 (375)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCC---CHHHHCSSSTTEEEEEESTTTTTC
T ss_pred             CccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhcccccccccc---ccccccCCCCCEEEEeechhhccC
Confidence            78899999999999999999999999999999999999999999998764222   222334556799999999999999


Q ss_pred             CCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012647          309 YAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  388 (459)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  388 (459)
                      ||+|+||+++   +++.++.+.....    ......+...+......+.+.         ....++.++++++.+.+.|+
T Consensus       238 ~G~R~G~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~r~~~~~~~l~  301 (375)
T d1o4sa_         238 TGWRVGYLIS---SEKVATAVSKIQS----HTTSCINTVAQYAALKALEVD---------NSYMVQTFKERKNFVVERLK  301 (375)
T ss_dssp             GGGCCEEEEC---CHHHHHHHHHHHH----HHTCSCCHHHHHHHHHHTTCC---------CHHHHHHHHHHHHHHHHHHH
T ss_pred             Cccccccccc---cccchhhhhhhhc----cccccccccchhhhhhhcccc---------hhhhHHHHHHHHHHHHHHHH
Confidence            9999999866   7775554443322    334456666666665555432         34567789999999999999


Q ss_pred             hccCCCCCcccccCCcceeeecCC---CHHHHHHHHhcccEEEcCCC--------cEEEccCChhhHHHHHHHHHHHHh
Q 012647          389 AKDKSGKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       389 ~~~g~~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e~i~~~~~~l~~~~~  456 (459)
                       +.|    +++..|+||||+|+.+   +.+++.++++++||.++||.        |||++. +++++++++++|+++++
T Consensus       302 -~~g----~~~~~p~gg~f~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~~-~~e~l~~al~rl~~~l~  374 (375)
T d1o4sa_         302 -KMG----VKFVEPEGAFYLFFKVRGDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFAT-SIERLTEALDRIEDFLN  374 (375)
T ss_dssp             -HTT----CCCCCCSBSSEEEEECSSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS-CHHHHHHHHHHHHHHHT
T ss_pred             -hcC----ceEecCCccEEEEEECCCCHHHHHHHHHHhCCEEEEEccccCCCCeEEEEEcC-CHHHHHHHHHHHHHHhc
Confidence             887    6888999999999866   35778899988899999972        999987 89999999999999986

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-51  Score=408.56  Aligned_cols=368  Identities=15%  Similarity=0.106  Sum_probs=295.6

Q ss_pred             cCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC-CCCCCCCCcccHHHHHHHHH
Q 012647           59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-ENKEYLPIEGLAAFNKVTAE  137 (459)
Q Consensus        59 ~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~Y~~~~g~~~lr~aia~  137 (459)
                      ++|+....+++..+..+...   ++++|||++|.|    .+++ |+.+.+++.+++..+ ..++|++..|.++||++||+
T Consensus         4 ~~r~~~~~~~~~~~~~~~~~---~~dvI~l~~G~p----~~~~-p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~   75 (418)
T d1w7la_           4 ARRLDGIDYNPWVEFVKLAS---EHDVVNLGQGFP----DFPP-PDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILAS   75 (418)
T ss_dssp             CGGGTTCCCCTHHHHHHHHH---TSCCEECCCCSC----SSCC-CHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHH
T ss_pred             CccccCCCCCHHHHHHHHhC---CCCCEECCCCCC----CCCC-CHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHH
Confidence            34455555666665554332   468999999999    5665 889999999988654 23579999999999999999


Q ss_pred             HHhcCCCCcccc-CceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecC-------
Q 012647          138 LLFGADNSVLKE-QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP-------  209 (459)
Q Consensus       138 ~l~~~~~~~~~~-~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~-------  209 (459)
                      ++...+|..+++ ++|++  |+|+++++.++  +...+.+||.|++++|+|+.|...+...|++++.++..+.       
T Consensus        76 ~~~~~~g~~~~~~~~I~i--t~G~~~al~~~--~~~l~~~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~  151 (418)
T d1w7la_          76 FFGELLGQEIDPLRNVLV--TVGGYGALFTA--FQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGEL  151 (418)
T ss_dssp             HHHHHHTCCCCHHHHEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCS
T ss_pred             HHHHHhCCCCCcccceee--ccCcHHHHHHH--HHhhccCCceeeccccccchhHHHHHHcCCEeecccccccccccccc
Confidence            998877888875 68999  99999999998  4445779999999999999999999999999999887532       


Q ss_pred             ---CCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH
Q 012647          210 ---KTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (459)
Q Consensus       210 ---~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~  286 (459)
                         +++.+|.+++.....+   .++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++.  ...++
T Consensus       152 ~~~~~~~~d~~~~~~~~~~---~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~--~~~~~  226 (418)
T d1w7la_         152 GSSSNWQLDPMELAGKFTS---RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGH--QHISI  226 (418)
T ss_dssp             EEGGGEECCHHHHHHHCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCG
T ss_pred             ccccCcccchhhhhccccc---cccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCC--CCCCH
Confidence               2445677666665554   788999999999999999999999999999999999999999999998652  23344


Q ss_pred             HHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhh-HHHH
Q 012647          287 RLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPAL-FDEW  365 (459)
Q Consensus       287 ~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~-~~~~  365 (459)
                      ..+.+..++++++.|+||.+++||+|+||+++   +++.+..    +.........+++.++|.++..+|.+... ...+
T Consensus       227 ~~~~~~~~~~i~~~S~SK~~~~pG~RvG~~v~---~~~~~~~----l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~  299 (418)
T d1w7la_         227 ASLPGMWERTLTIGSAGKTFSATGWKVGWVLG---PDHIMKH----LRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQP  299 (418)
T ss_dssp             GGSTTTGGGEEEEEEHHHHTTCGGGCCEEEEC---CHHHHHH----HHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTST
T ss_pred             HHccccccccceecccCccccCCCCccccccc---chhhhhh----hccccccccccccchhhHHHHHHhhhcccccccc
Confidence            34434456899999999999999999999966   7774444    44444445568889988888777765432 2223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC------------------CHHHHHHHHhcccEE
Q 012647          366 KAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL------------------NKAQSDNMTNKWHVY  427 (459)
Q Consensus       366 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l------------------~~~~~~~ll~~~gI~  427 (459)
                      .+++...++.++++++.+.+.|+ ++|    +++..|+||||+|+++                  +.+++++|++++||.
T Consensus       300 ~~~~~~~~~~~~~~r~~l~~~L~-~~g----~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~  374 (418)
T d1w7la_         300 SSYFVQFPQAMQRCRDHMIRSLQ-SVG----LKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLV  374 (418)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHH-TTT----CEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEE
T ss_pred             ccccccchhhhhhhhhhhhhhhh-hcC----CcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEE
Confidence            45578889999999999999999 887    6889999999999754                  246688999999999


Q ss_pred             EcCC-------------C--cEEEccCChhhHHHHHHHHHHHHh
Q 012647          428 MTKD-------------G--RISLAGLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       428 v~~g-------------g--Ris~~~~~~e~i~~~~~~l~~~~~  456 (459)
                      ++||             |  ||||+. +++++++++++|++...
T Consensus       375 v~PG~~F~~~~~~~~~~~~iRis~~~-~~~~l~~a~~rl~~~~~  417 (418)
T d1w7la_         375 AIPVSIFYSVPHQKHFDHYIRFCFVK-DEATLQAMDEKLRKWKV  417 (418)
T ss_dssp             CEEGGGGSCHHHHTTSCSEEEEECCC-CHHHHHHHHHHHHHHHC
T ss_pred             EEcchhhcCCCccCCCCCEEEEEEcC-CHHHHHHHHHHHHHHhc
Confidence            9987             1  999987 88999999999988754

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=100.00  E-value=5.5e-49  Score=389.26  Aligned_cols=349  Identities=12%  Similarity=0.108  Sum_probs=273.3

Q ss_pred             CCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           80 DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        80 ~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      ..+.++|+|++|+|    .+|+ |+.|++++.++++.+. ++|+  .|.++||++||+++...+|..+++++|++  |+|
T Consensus        28 ~~g~~vi~l~~g~p----df~~-p~~v~~al~~~~~~~~-~~Y~--~g~~~Lr~aia~~~~~~~g~~~~~~~I~v--t~G   97 (394)
T d1c7na_          28 EVGNEVVPLSVADM----EFKN-PPELIEGLKKYLDETV-LGYT--GPTEEYKKTVKKWMKDRHQWDIQTDWIIN--TAG   97 (394)
T ss_dssp             TCCTTCCCCCSSSC----SSCC-CHHHHHHHHHHHHHCC-CSSB--CCCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESS
T ss_pred             hcCCCeEEccCCCC----CCCC-CHHHHHHHHHHHhCCC-cCCC--CCCHHHHHHHHHHHHHhcCCCCCCcceEe--ecc
Confidence            44568999999999    5765 8999999999987764 7885  47889999999999988899999999999  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeec-CCCCCCCHHHHHHHHHcCCCCcEEEEeCCC
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD-PKTVGLDFEGMIADIKAAPGGSFILLHGCA  238 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~-~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p  238 (459)
                      +++++.++  +...+.|||+|++++|.|.+|...++..|++.+.++... +..+.+|.+.++..+..  ++++++++|||
T Consensus        98 ~~~al~~~--~~~~~~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~i~l~~P  173 (394)
T d1c7na_          98 VVPAVFNA--VREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD--KNNKALLFCSP  173 (394)
T ss_dssp             HHHHHHHH--HHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC--TTEEEEEEESS
T ss_pred             chhhhhhh--hccccccccccccccCcccchhhHHhhhhhcccccccccccccccchhhhhhhhhcc--ccceEEEeccc
Confidence            99999998  455578999999999999999999999999999888643 34567899988887765  47889999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012647          239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (459)
Q Consensus       239 ~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (459)
                      |||||.+++.+++++|+++|++|+++||+||+|.++.+++...... .........+++++.|+||.|+++|||+||+  
T Consensus       174 ~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~-~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~--  250 (394)
T d1c7na_         174 HNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVF-QSIDEQLADKTITFTAPSKTFNIAGMGMSNI--  250 (394)
T ss_dssp             BTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCG-GGSCHHHHTTEEEEECSHHHHTCGGGCCEEE--
T ss_pred             ccccceeccHHHhhhhhccccccceeEeccccccccccCCccccch-hhhhcccccceeecccccccccccccccccc--
Confidence            9999999999999999999999999999999999998864321111 1111123468999999999999999999999  


Q ss_pred             EeCChhHHHHHHHHHHhhccccccCCchHHHHHHH-HHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Q 012647          319 VCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVA-NVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDW  397 (459)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~  397 (459)
                      +++++...+.+..    .......++....+.+++ ......      .+..++.++.++++++.+.+.++ ..+.  ++
T Consensus       251 ~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~-~~~~--~~  317 (394)
T d1c7na_         251 IIKNPDIRERFTK----SRDATSGMPFTTLGYKACEICYKEC------GKWLDGCIKVIDKNQRIVKDFFE-VNHP--EI  317 (394)
T ss_dssp             ECCCHHHHHHHHH----HHHHTTCCCCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HHCT--TS
T ss_pred             cccChhhhhhhhh----hhhhccccccccccchhhhhhhcch------hhhhcccccccchhhhhhhhhhh-cccc--ce
Confidence            4556663333322    222223233333333332 222111      23467788888888888888887 6531  26


Q ss_pred             ccccCCcceeeecCC-----CH-HHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHHHHhhcC
Q 012647          398 SFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYHNVS  459 (459)
Q Consensus       398 ~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~~~~~~~  459 (459)
                      .+..|+||||+|+++     +. +++++|++++||.+.||        |  ||||+. ++|++++++++|++++++|+
T Consensus       318 ~~~~p~g~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~-~~e~i~eal~rl~~~l~~Lk  394 (394)
T d1c7na_         318 KAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSVIQESLERLNKALKDLK  394 (394)
T ss_dssp             BCCCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHHC
T ss_pred             eecCCCceeEEEEECCCCCCCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEeC-CHHHHHHHHHHHHHHHHhcC
Confidence            778899999999743     44 56788999899999987        1  999986 88999999999999999874

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.6e-49  Score=386.68  Aligned_cols=336  Identities=11%  Similarity=0.118  Sum_probs=281.4

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccC-ceEEeecccch
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT  161 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt  161 (459)
                      .++|||+.|.|    .+++ |+.+++++.+.+.++. ++|++..|.++||++||+++...+|..++++ +|++  |+|++
T Consensus        26 ~~~i~l~~G~P----d~~~-p~~i~~a~~~~~~~~~-~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~v--t~G~~   97 (382)
T d1u08a_          26 HQAINLSQGFP----DFDG-PRYLQERLAHHVAQGA-NQYAPMTGVQALREAIAQKTERLYGYQPDADSDITV--TAGAT   97 (382)
T ss_dssp             TTCEECCCSSC----SSCC-CHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEE--ESSHH
T ss_pred             CCCEEccCCCC----CCCC-CHHHHHHHHHHHhcCC-CCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEe--ccchH
Confidence            58899999999    5665 8899999999887654 8999999999999999999988888888776 5999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      +++.++  +...+.+||.|++++|+|+.+...+...|++++.++.+ ++++.+|++++++.+++   ++++++++|||||
T Consensus        98 ~al~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~~~~---~~~~i~l~~P~NP  171 (382)
T d1u08a_          98 EALYAA--ITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQ-PPHFRVDWQEFAALLSE---RTRLVILNTPHNP  171 (382)
T ss_dssp             HHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECC-TTTCCCCHHHHHHHCCT---TEEEEEEESSCTT
T ss_pred             HHHHHH--HhhcccccceEEEecccccchhhhhhhccccceecccc-cccccCCHHHHhhhhcc---CccEEEECCCCcc
Confidence            999998  45557799999999999999999999999998888875 56788999999988776   7888999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+++.+++++|+++|.+++++++.|++|..+.+.+.......  ......++++++.|+||.+++||+|+||+++   
T Consensus       172 tG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~---  246 (382)
T d1u08a_         172 SATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVL--AHPQLRERAVAVSSFGKTYHMTGWKVGYCVA---  246 (382)
T ss_dssp             TCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGG--GSHHHHTTEEEEEEHHHHTTCGGGCCEEEEC---
T ss_pred             cccccccccchhhhhhhccccceeeeecchhhcccccccccccc--ccccccCcEEEEeeccccccCCcccchhhhc---
Confidence            99999999999999999999999999999998887643222211  1123346899999999999999999999865   


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  401 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  401 (459)
                      +++.++.+....    .....+++.+.|.++..++.++      .++++++++.++++++.+.+.+. ..|    +.+..
T Consensus       247 ~~~~~~~~~~~~----~~~~~~~~~~~q~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~~~-~~g----~~~~~  311 (382)
T d1u08a_         247 PAPISAEIRKVH----QYLTFSVNTPAQLALADMLRAE------PEHYLALPDFYRQKRDILVNALN-ESR----LEILP  311 (382)
T ss_dssp             CHHHHHHHHHHH----HHHTSSCCHHHHHHHHHHHHHC------THHHHTHHHHHHHHHHHHHHHTT-SSS----CEECC
T ss_pred             cchhHHHHHhhh----cccccccccccccccccccccc------hHHHHHHHHHHHhhhhhhhhhhc-cCC----cEEec
Confidence            888555544432    2334578899999988887644      23467889999999999999998 776    68899


Q ss_pred             CCcceeeecCC------C-HHHHHHHHhcccEEEcCC--------C----cEEEccCChhhHHHHHHHHHH
Q 012647          402 RQIGMFSFTGL------N-KAQSDNMTNKWHVYMTKD--------G----RISLAGLSLAKCEYLADAIID  453 (459)
Q Consensus       402 ~~~g~f~~~~l------~-~~~~~~ll~~~gI~v~~g--------g----Ris~~~~~~e~i~~~~~~l~~  453 (459)
                      |+||||+|+++      + .+++++|++++||.++||        +    ||||+. ++|++++++++|++
T Consensus       312 p~gg~~~~~~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~-~~e~l~~al~RL~~  381 (382)
T d1u08a_         312 CEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERLRQ  381 (382)
T ss_dssp             CCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS-CHHHHHHHHHHHTT
T ss_pred             CCceEEEEEecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEeC-CHHHHHHHHHHHhC
Confidence            99999999743      3 467889999899999987        1    999987 88999999999875

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=100.00  E-value=1.2e-46  Score=376.28  Aligned_cols=347  Identities=14%  Similarity=0.164  Sum_probs=272.5

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcC----------CCCCCCCCcccHHHHHHHHHHHhcCCCC--ccccC
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG----------ENKEYLPIEGLAAFNKVTAELLFGADNS--VLKEQ  150 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~----------~~~~Y~~~~g~~~lr~aia~~l~~~~~~--~~~~~  150 (459)
                      .++|+|+++++    .  ...+.+.+.+.+.....          ...+|++..|.++||++||+++...++.  .++++
T Consensus        36 ~G~i~l~~aen----~--l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e  109 (428)
T d1iaya_          36 NGVIQMGLAEN----Q--LCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPE  109 (428)
T ss_dssp             TSBEECSSCCC----C--SSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTT
T ss_pred             CceEEeecccC----c--cchHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCCCCCCChh
Confidence            35999999986    2  22455555444422110          1247999999999999999999887764  56789


Q ss_pred             ceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh-hCCCCeeeeeeecCCCCCCCHHHHHHHHHc---C
Q 012647          151 RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEYRYYDPKTVGLDFEGMIADIKA---A  226 (459)
Q Consensus       151 ~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~  226 (459)
                      +|++  |+|++++++++  +...+.|||+|++++|+|..|...+. ..|+++++++++.++++.+|++.++.+++.   .
T Consensus       110 ~Ivi--t~G~~~al~~~--~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~  185 (428)
T d1iaya_         110 RVVM--AGGATGANETI--IFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKS  185 (428)
T ss_dssp             SCEE--EEHHHHHHHHH--HHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHT
T ss_pred             hEEE--cCCHHHHHHHH--HHHhCCCCCEEEEccCCchHHHHHHHHhcCCeEEEeecccccccccccccccchhhhhhcc
Confidence            9999  99999999998  44457799999999999999988777 458999999997777899999988766533   3


Q ss_pred             CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-------cCCeEEEE
Q 012647          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-------RGMELLVA  299 (459)
Q Consensus       227 ~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~  299 (459)
                      .+++++++++|||||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+..       ..++++++
T Consensus       186 ~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~vi~~  263 (428)
T d1iaya_         186 NIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTP--QFVSIAEILDEQEMTYCNKDLVHIV  263 (428)
T ss_dssp             TCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSS--CCCCHHHHHTSGGGTTSCTTSEEEE
T ss_pred             CCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcc--cccccccccchhhccccccceEEEE
Confidence            45788888999999999999999999999999999999999999999988642  2333333322       34689999


Q ss_pred             EcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012647          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV  379 (459)
Q Consensus       300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~  379 (459)
                      +||||.|+++|+|+||++  +.++.    +.+.+.....  +...+...|.++...+.+.++.   .+++++.++.++++
T Consensus       264 ~s~SK~~~~~GlRiG~~~--~~~~~----l~~~~~~~~~--~~~~~~~~~~~~~a~l~~~~~~---~~~~~~~~~~l~~r  332 (428)
T d1iaya_         264 YSLSKDMGLPGFRVGIIY--SFNDD----VVNCARKMSS--FGLVSTQTQYFLAAMLSDEKFV---DNFLRESAMRLGKR  332 (428)
T ss_dssp             EESTTTSSCGGGCEEEEE--ESCHH----HHHHHHHHHT--TSCCCHHHHHHHHHHTTCHHHH---HHHHHHHHHHHHHH
T ss_pred             ecCCCcccCCCccccccc--ccccc----hhhhhhhhhc--ccccccccccchhhhhhhhccc---cccccccccccchh
Confidence            999999999999999994  44555    3333332221  3356666777777777766554   34578888999999


Q ss_pred             HHHHHHHHhhccCCCCCcccccCCcceeeecCCC-----------HHHHHHHHhcccEEEcCC--------C--cEEEcc
Q 012647          380 RQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN-----------KAQSDNMTNKWHVYMTKD--------G--RISLAG  438 (459)
Q Consensus       380 ~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~-----------~~~~~~ll~~~gI~v~~g--------g--Ris~~~  438 (459)
                      ++.+.+.|+ ..|    +++..|++|||+|+++.           .+++++|++++||.+.||        |  ||||+.
T Consensus       333 ~~~~~~~L~-~~g----i~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a~  407 (428)
T d1iaya_         333 HKHFTNGLE-VVG----IKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFAN  407 (428)
T ss_dssp             HHHHHHHHH-HTT----CCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSS
T ss_pred             HHHHHHHHH-hCC----CEEecCCcceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeCC
Confidence            999999999 887    68889999999998652           245788999899999987        2  999987


Q ss_pred             CChhhHHHHHHHHHHHHhh
Q 012647          439 LSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       439 ~~~e~i~~~~~~l~~~~~~  457 (459)
                      .+++++++++++|++++..
T Consensus       408 ~~~~~l~~al~Rl~~~l~~  426 (428)
T d1iaya_         408 MDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             SCHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHhh
Confidence            6778899999999999875

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.3e-47  Score=378.86  Aligned_cols=359  Identities=13%  Similarity=0.096  Sum_probs=282.0

Q ss_pred             CCCCCCCCccchhHH---HhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHH
Q 012647           61 GVTMAPPDPILGVSE---AFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE  137 (459)
Q Consensus        61 ~~~~~~~~~i~~~~~---~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~  137 (459)
                      ++...++++|+++..   ..++. +.++|+|+.|+|    .+++ |+.+.+++.+... + .++|++..|.++||+++|+
T Consensus         4 r~~~~~~~~i~~l~~~a~~~~~~-g~~vi~l~~G~p----~~~~-p~~~~~al~~~~~-~-~~~Y~~~~G~~~LR~aia~   75 (389)
T d2gb3a1           4 RVLLTEESPIRKLVPFAEMAKKR-GVRIHHLNIGQP----DLKT-PEVFFERIYENKP-E-VVYYSHSAGIWELREAFAS   75 (389)
T ss_dssp             HHHSCCCCTTGGGHHHHHHHHHT-TCEEEECSSCCC----CSCC-CTHHHHHHHHTCC-S-SCCCCCTTCCHHHHHHHHH
T ss_pred             hhhcCCCCHHHHHHHHHHHHHHc-CCCEEECCCCCC----CCCC-CHHHHHHHHhcCC-C-CCCCCCCcCCHHHHHHHHH
Confidence            344456777877654   33333 468999999999    5654 7888898887653 3 4789999999999999999


Q ss_pred             HHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHH
Q 012647          138 LLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFE  217 (459)
Q Consensus       138 ~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e  217 (459)
                      ++...+|..+++++|++  |+|+++++.++  +...+.+||.|++++|+|+.|...++..|++++.++.+++ ++..+.+
T Consensus        76 ~~~~~~g~~~~~~~I~i--t~G~~~~l~~~--~~~l~~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~  150 (389)
T d2gb3a1          76 YYKRRQRVDVKPENVLV--TNGGSEAILFS--FAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRME-EGFAIPQ  150 (389)
T ss_dssp             HHHHTSCCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGG-GTSCCCT
T ss_pred             HHHHhcCCCcccceEEe--ccccccccccc--ccccccCCCeEEEeCCCCccccccccccCccccccccccc-cccchhh
Confidence            99988999999999999  99999999998  4444779999999999999999999999999999998533 3444545


Q ss_pred             HHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEE
Q 012647          218 GMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (459)
Q Consensus       218 ~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i  297 (459)
                      .+...+.   +++++++++|||||||.+++.+++++|+++|++||++||+||+|.++.+++...   +  ......++++
T Consensus       151 ~~~~~~~---~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~---~--~~~~~~~~~~  222 (389)
T d2gb3a1         151 NLESFIN---ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFA---S--ALSIESDKVV  222 (389)
T ss_dssp             TGGGGCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCC---C--GGGSCCTTEE
T ss_pred             hhhhhcc---cCccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEeccccccccccccc---c--cccccccccc
Confidence            5554444   378899999999999999999999999999999999999999999999874221   1  1223456889


Q ss_pred             EEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012647          298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  377 (459)
Q Consensus       298 ~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  377 (459)
                      ++.|+||.++++|||+||++  +.++.    +........ ....+++...|.++..++...      +++++++++.++
T Consensus       223 v~~s~sK~~~~~GlRiG~~~--~~~~~----i~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~  289 (389)
T d2gb3a1         223 VIDSVSKKFSACGARVGCLI--TRNEE----LISHAMKLA-QGRLAPPLLEQIGSVGLLNLD------DSFFDFVRETYR  289 (389)
T ss_dssp             EEEESTTTTTCGGGCCEEEE--CSCHH----HHHHHHHHH-HHSCCCCHHHHHHHHHHHTCC------HHHHHHHHHHHH
T ss_pred             ccccccccccCcccceeeee--ccchh----HHHHHhhhh-hcccccccccccccccccccc------chhccccccccc
Confidence            99999999999999999984  44444    222222222 223466677777777777654      345788899999


Q ss_pred             HHHHHHHHHHhhccCCCCCcccccCCcceeeecCC----CHHHHHHHHhc-----ccEEEcCC---------C----cEE
Q 012647          378 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----NKAQSDNMTNK-----WHVYMTKD---------G----RIS  435 (459)
Q Consensus       378 ~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l----~~~~~~~ll~~-----~gI~v~~g---------g----Ris  435 (459)
                      ++++.+.+.|+ ++|.   ..+..|++|+|+|+.+    +.+++++|+++     +||.+.||         |    |||
T Consensus       290 ~~~~~~~~~L~-~~~~---~~~~~p~~g~~~~~~lp~~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis  365 (389)
T d2gb3a1         290 ERVETVLKKLE-EHGL---KRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIA  365 (389)
T ss_dssp             HHHHHHHHHHH-HTTC---CCBCCCSBSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEE
T ss_pred             ccchhhhhhhh-hhcc---ccccCCCceEEEEEeCCCCCHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEE
Confidence            99999999999 8873   4567889999999865    34667788765     46777775         1    999


Q ss_pred             EccCChhhHHHHHHHHHHHHhhc
Q 012647          436 LAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       436 ~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      ++. +++++++++++|.+++++.
T Consensus       366 ~~~-~~~~l~~a~~~L~~~lk~f  387 (389)
T d2gb3a1         366 CVL-EKDLLSRAIDVLMEGLKMF  387 (389)
T ss_dssp             CCS-CHHHHHHHHHHHHHHHHHH
T ss_pred             EcC-CHHHHHHHHHHHHHHHHHh
Confidence            986 8999999999999998864

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=100.00  E-value=3.1e-47  Score=380.85  Aligned_cols=346  Identities=17%  Similarity=0.200  Sum_probs=272.4

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhh------cC-----CCCCCCCCcccHHHHHHHHHHHhcCCC--CccccC
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLE------RG-----ENKEYLPIEGLAAFNKVTAELLFGADN--SVLKEQ  150 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~------~~-----~~~~Y~~~~g~~~lr~aia~~l~~~~~--~~~~~~  150 (459)
                      ++|+|+++++    ..  ..+.+.+.+.+...      ..     ....|++..|.++||++||+++...++  ..++|+
T Consensus        37 G~i~l~~~en----~l--~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe  110 (431)
T d1m7ya_          37 GIIQMGLAEN----QL--CFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPN  110 (431)
T ss_dssp             SBEECSSCCC----CS--CHHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGG
T ss_pred             cEEEeecccc----cc--cHHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcc
Confidence            4999999986    22  24555554443110      00     114699999999999999999987765  457799


Q ss_pred             ceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh-hCCCCeeeeeeecCCCCCCCHHHHHHHHHc---C
Q 012647          151 RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEYRYYDPKTVGLDFEGMIADIKA---A  226 (459)
Q Consensus       151 ~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~  226 (459)
                      +|++  |+|+++++.++  +...+.|||+|++++|+|..+...+. ..|++++++++++++++.+|++.+++.+.+   .
T Consensus       111 ~I~i--t~G~~~al~~~--~~~l~~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~  186 (431)
T d1m7ya_         111 HLVL--TAGATSANETF--IFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKR  186 (431)
T ss_dssp             GEEE--EEHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHT
T ss_pred             eEEE--CCCHHHHHHHH--HHHhcCCCCEEEEeCCCchhHHHHHHHhcCceeccccccchhcccccHHHhhhhhhhhhhc
Confidence            9999  99999999998  44447799999999999999988887 468999999998777889999999988754   3


Q ss_pred             CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc---------CCeEE
Q 012647          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR---------GMELL  297 (459)
Q Consensus       227 ~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~---------~~~~i  297 (459)
                      ..++++++++|||||||.+++++++++|+++|++||++||+||+|..+.+++  ....++..+...         .++++
T Consensus       187 ~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~--~~~~s~~~~~~~~~~~~~~~~~~~vi  264 (431)
T d1m7ya_         187 NLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS--PSFISVMEVLKDRNCDENSEVWQRVH  264 (431)
T ss_dssp             TCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSS--SCCCCHHHHTTTTTCSSSSSGGGGEE
T ss_pred             cCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCC--CCCCCHHHHhhhcccccccccCceEE
Confidence            4568889999999999999999999999999999999999999999998864  223333333221         24799


Q ss_pred             EEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012647          298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  377 (459)
Q Consensus       298 ~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  377 (459)
                      +++||||.||++|+|+||++.   +++.+.....   ..  ..+..++...|.++...+.+..+.   ++++++.+++++
T Consensus       265 ~~~s~SK~~~~~G~RiG~~~~---~~~~i~~~~~---~~--~~~~~~~~~~~~~~~a~l~~~~~~---~~~~~~~~~~~~  333 (431)
T d1m7ya_         265 VVYSLSKDLGLPGFRVGAIYS---NDDMVVAAAT---KM--SSFGLVSSQTQHLLSAMLSDKKLT---KNYIAENHKRLK  333 (431)
T ss_dssp             EEEESSSSSCCGGGCEEEEEE---SCHHHHHHHH---HH--GGGSCCCHHHHHHHHHHHHCHHHH---HHHHHHHHHHHH
T ss_pred             EEecCcccccCCCCccceecc---chhhhHHHHH---HH--hccccccccccchhhhhhccchhh---hhhhhhhhhhhh
Confidence            999999999999999999965   5553322222   22  123356666667776666655443   345788899999


Q ss_pred             HHHHHHHHHHhhccCCCCCcccccCCcceeeecCCC-----------HHHHHHHHhcccEEEcCC--------C--cEEE
Q 012647          378 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN-----------KAQSDNMTNKWHVYMTKD--------G--RISL  436 (459)
Q Consensus       378 ~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~-----------~~~~~~ll~~~gI~v~~g--------g--Ris~  436 (459)
                      ++++.+.+.|+ +.|    +++..|+||+|+|+++.           .++++++++++||.+.||        |  ||||
T Consensus       334 ~~~~~l~~~L~-~~g----i~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~  408 (431)
T d1m7ya_         334 QRQKKLVSGLQ-KSG----ISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCF  408 (431)
T ss_dssp             HHHHHHHHHHH-TTT----CEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEEC
T ss_pred             hhhhhhhhhhh-cCC----cEEecCCceeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEEe
Confidence            99999999999 887    68899999999998652           256889999899999997        2  9999


Q ss_pred             ccCChhhHHHHHHHHHHHHhh
Q 012647          437 AGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       437 ~~~~~e~i~~~~~~l~~~~~~  457 (459)
                      +..+++++++++++|++++++
T Consensus       409 a~~~e~~l~~al~rL~~~l~~  429 (431)
T d1m7ya_         409 ANLPERTLDLAMQRLKAFVGE  429 (431)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHHHHH
Confidence            876788999999999999986

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.2e-47  Score=370.25  Aligned_cols=344  Identities=15%  Similarity=0.076  Sum_probs=271.9

Q ss_pred             ceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHH
Q 012647           85 KLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSL  164 (459)
Q Consensus        85 ~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~  164 (459)
                      +|+|++|+|    ++|+ |+.+.+++.+.+..+. ++|++..| +++|+++++++...+|..+++++|++  |+|+++++
T Consensus         1 ~~~~~~~~~----df~~-p~~i~eal~~~~~~~~-~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~i--t~G~~~~l   71 (361)
T d1d2fa_           1 LLPFTISDM----DFAT-APCIIEALNQRLMHGV-FGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVY--GPSVIYMV   71 (361)
T ss_dssp             CEECCSSSC----SSCC-CHHHHHHHHHHHTTCC-CCCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEE--ESCHHHHH
T ss_pred             CcCcCCCCC----CCCC-CHHHHHHHHHHHhCCC-CCCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEE--eCCHHHHH
Confidence            589999999    5765 8999999999987664 78988888 68999999999999999999999999  99999999


Q ss_pred             HHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeec-CCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCC
Q 012647          165 RLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD-PKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTG  243 (459)
Q Consensus       165 ~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~-~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG  243 (459)
                      ..+  +...+.|||+|++++|+|+.|...++..|.+++.++.+. ++++.+|++.+++.+..  +++++++++|||||||
T Consensus        72 ~~~--~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~--~~~~~i~l~~p~NPTG  147 (361)
T d1d2fa_          72 SEL--IRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK--PECKIMLLCSPQNPTG  147 (361)
T ss_dssp             HHH--HHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS--TTEEEEEEESSCTTTC
T ss_pred             HHH--hhhccccccccccccccccchhHHHHhhcceEEeecccccccccccccccchhhccc--CCceeEEecccccccc
Confidence            987  444467999999999999999999999999999998764 34567999999999876  4788899999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCCh
Q 012647          244 IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS  323 (459)
Q Consensus       244 ~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~  323 (459)
                      .+++.+++++|+++|+++|++||+||+|.++.+++..  ...+.  ....++++++.|+||.++++|+|+||+.+  .++
T Consensus       148 ~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~--~~~~~--~~~~~~~v~~~s~SK~~~~~g~R~g~~~~--~~~  221 (361)
T d1d2fa_         148 KVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQP--HIPWS--NVARGDWALLTSGSKSFNIPALTGAYGII--ENS  221 (361)
T ss_dssp             CCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSC--CCCGG--GTCCSSEEEEECSHHHHTCGGGCCEEEEE--CSH
T ss_pred             cccchhhhhhhhhhhhhhheeeeeccccccccccccc--ccccc--cccccccccccccccccccccccceeeec--chh
Confidence            9999999999999999999999999999999876422  11111  12346899999999999999999999854  444


Q ss_pred             hHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCC
Q 012647          324 DLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ  403 (459)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~  403 (459)
                      ...+.+...+...  ....+++..++.++...+...      .+..++.+..++++++.+.+.+. +..  .++.+..|+
T Consensus       222 ~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~~r~~~~~~~~~-~~~--~~~~~~~p~  290 (361)
T d1d2fa_         222 SSRDAYLSALKGR--DGLSSPSVLALTAHIAAYQQG------APWLDALRIYLKDNLTYIADKMN-AAF--PELNWQIPQ  290 (361)
T ss_dssp             HHHHHHHHHHHTT--SCCCSCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HHC--SSCCCCCCS
T ss_pred             HHHHHHhhhcccc--cccccchhhhHHHHHHHhhcc------chhhhcccccchhhHHHHHHHhh-hhc--ccccccccC
Confidence            4333333333221  222234444444333333221      23356778888888888888877 542  126778899


Q ss_pred             cceeeecCC-----CH-HHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHHHhhcC
Q 012647          404 IGMFSFTGL-----NK-AQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYHNVS  459 (459)
Q Consensus       404 ~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~~~~~~  459 (459)
                      ||+|+|+.+     +. +++.+|++++||.+.||.          |||++. +++++++++++|++++++++
T Consensus       291 gg~~~~~~l~~~~~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~~-~~e~l~~al~rl~~~l~~lr  361 (361)
T d1d2fa_         291 STYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-PRSKLEKGVAGLINAIRAVR  361 (361)
T ss_dssp             BCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHHC
T ss_pred             ceeEEEEEccCCCCCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEcC-CHHHHHHHHHHHHHHHHhcC
Confidence            999999754     43 667889998999999871          999986 88999999999999999874

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=9.6e-48  Score=383.67  Aligned_cols=364  Identities=14%  Similarity=0.161  Sum_probs=282.3

Q ss_pred             CCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCCCCCCcccHHHHHHHHHHHhcC
Q 012647           65 APPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGA  142 (459)
Q Consensus        65 ~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~aia~~l~~~  142 (459)
                      ..+++|+++++..   .++++|||+.|.| |...+|  .+.+.+++.++++..  ...+|++..|.++||++||+++...
T Consensus        23 ~~~s~ir~~~~~~---~~~~~I~l~~G~P-d~~~~P--~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~   96 (420)
T d1vp4a_          23 MKSSIIREILKFA---ADKDAISFGGGVP-DPETFP--RKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERM   96 (420)
T ss_dssp             CCCCCHHHHTTTT---TSTTCEECCCCSC-CGGGSC--HHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHh---CCCCcEecCCcCC-CCccCC--HHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHH
Confidence            3567777765432   3579999999998 433333  466777777766432  2367999999999999999999888


Q ss_pred             CCCc-cccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHH
Q 012647          143 DNSV-LKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA  221 (459)
Q Consensus       143 ~~~~-~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~  221 (459)
                      +|.. +++++|++  |+|+++++.++  +...+.|||+|++++|+|..|...++.+|++++.+|.++   .++|++.+..
T Consensus        97 ~g~~~~~~~~I~i--t~G~~~al~~~--~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~---~~~~~~~l~~  169 (420)
T d1vp4a_          97 YGITGLDEDNLIF--TVGSQQALDLI--GKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLED---DGMDLNVLER  169 (420)
T ss_dssp             HCCCSCCGGGEEE--EEHHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET---TEECHHHHHH
T ss_pred             hCCCCCCHHHeEe--ccchhhhHHHH--HHhhhccccccccccccccchhHHHHHHhhhcccccccc---cccccchhhh
Confidence            7775 78999999  99999999998  444477999999999999999999999999999999863   3578888776


Q ss_pred             HHHc------CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012647          222 DIKA------APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME  295 (459)
Q Consensus       222 ~i~~------~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~  295 (459)
                      .+.+      ..+.+.++++++||||||.+++.+++++|+++|++|++++|+||+|.++.+++..  ..+. ......++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~--~~~~-~~~~~~~~  246 (420)
T d1vp4a_         170 KLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGET--VDPI-FKIGGPER  246 (420)
T ss_dssp             HHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCC--CCCH-HHHHCTTT
T ss_pred             hhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcc--cccc-cccccccc
Confidence            5432      1234667778999999999999999999999999999999999999999886422  1122 22345678


Q ss_pred             EEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012647          296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR  375 (459)
Q Consensus       296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~  375 (459)
                      +++++|+||.++ +|+|+||+++   +++.++.+.+..    .....+++...|.+++..+.+..+    .+++++.++.
T Consensus       247 ~i~~~s~sk~~~-~G~RiG~~~~---~~~~i~~l~~~~----~~~~~~~~~~~q~~~a~~l~~~~~----~~~~~~~~~~  314 (420)
T d1vp4a_         247 VVLLNTFSKVLA-PGLRIGMVAG---SKEFIRKIVQAK----QSADLCSPAITHRLAARYLERYDL----LEQLKPTIEL  314 (420)
T ss_dssp             EEEEEESTTTTC-GGGCEEEEEC---CHHHHHHHHHHH----HHHHSSCCHHHHHHHHHHHHHSCH----HHHTHHHHHH
T ss_pred             eeEEeccccccc-cccccccccc---cchhhhhhhhhh----hhccccCchhhhhhhhhhcccccc----cccchhHHHH
Confidence            899999999886 9999999865   888555554433    233457788888888777765544    4557788888


Q ss_pred             HHHHHHHHHHHHhhcc-CCCCCcccccCCcceeeecCC----CH-HHHHHHHhcccEEEcCC----------C--cEEEc
Q 012647          376 IKNVRQKLFDSLSAKD-KSGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKD----------G--RISLA  437 (459)
Q Consensus       376 ~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~g----------g--Ris~~  437 (459)
                      ++++++.+.+.|+ +. +--.++++..|+||||+|+.+    +. ++++.| +++||.+.||          +  ||||+
T Consensus       315 ~~~~~~~~~~~L~-~~~~~~~g~~~~~p~gg~f~~~~~~~~~d~~~~~~~l-~~~gV~v~PG~~F~~~~~~~~~iRls~~  392 (420)
T d1vp4a_         315 YRRKRTVMLNALE-EYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYA-KRKKVFYVPGRVFKVYDEPSPSMRLSFC  392 (420)
T ss_dssp             HHHHHHHHHHHHH-HHSTTSTTCEECCCSBSSEEEEECCTTCCTTTTHHHH-HHHTEECEEGGGGCTTCCCCSEEEEECS
T ss_pred             hhhhcccchhhhh-hhhccCCCcEEecCCceEEEEEECCCCCCHHHHHHHH-HHCCeEEEechhhCCCCCCCCEEEEEeC
Confidence            9999999988888 54 111236888999999999855    33 344444 5579999987          1  99998


Q ss_pred             cCChhhHHHHHHHHHHHHhhc
Q 012647          438 GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       438 ~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      ..++|++++++++|++++++.
T Consensus       393 ~~~~e~l~~a~~rL~~~l~~~  413 (420)
T d1vp4a_         393 LPPDEKIVEGIKRLREVVLEY  413 (420)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHh
Confidence            778899999999999999763

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=100.00  E-value=3.8e-47  Score=377.35  Aligned_cols=364  Identities=14%  Similarity=0.141  Sum_probs=278.4

Q ss_pred             CCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCCCCCCcccHHHHHHHHHHHhcCC
Q 012647           66 PPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGAD  143 (459)
Q Consensus        66 ~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~aia~~l~~~~  143 (459)
                      ..+.|+++.+...   ++++|||+.|.| +...+|  .+.+.+++.++++..  ...+|++..|.++||+++|+++...+
T Consensus        15 ~~s~ire~~~~~~---~~~~i~l~~G~P-~~~~~P--~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~   88 (403)
T d1wsta1          15 KASEVRELLKLVE---TSDVISLAGGLP-APETFP--VETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRY   88 (403)
T ss_dssp             CCHHHHHHHHHHT---SSSCEECCCCCC-CGGGSC--HHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHhC---CCCcEECCCCCC-CccccC--HHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHh
Confidence            4566776665432   478999999998 332222  467777777776432  13679999999999999999999888


Q ss_pred             CCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHH-HH
Q 012647          144 NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMI-AD  222 (459)
Q Consensus       144 ~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~-~~  222 (459)
                      |..+++++|++  |+|+++++.++.  ...+.+||+|++++|+|..|...++.+|++++.+|.+++..+..+..... +.
T Consensus        89 g~~~~~~~I~i--t~G~~~al~~~~--~~l~~~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~  164 (403)
T d1wsta1          89 DIPMSKVEIMT--VAGSQQALDLIG--RVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRVDLLEEKLEEL  164 (403)
T ss_dssp             CCCCTTCEEEE--ESSHHHHHHHHH--HHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHH
T ss_pred             CCCCChHHeee--cccchHHHHHHH--HHHhhcCCccccCCCcchhhhHHHhhccccceeEeecccCCccccccccchhh
Confidence            88899999999  999999999984  34477999999999999999999999999999999964332222222222 23


Q ss_pred             HHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcC
Q 012647          223 IKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY  302 (459)
Q Consensus       223 i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~  302 (459)
                      .....+...++++++||||||.+++.+++++|+++|++||++||+||+|.++.+++..  ..++. ..+..+++++++||
T Consensus       165 ~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~--~~~~~-~~~~~~~~i~~~S~  241 (403)
T d1wsta1         165 RKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEP--TPPIK-HFDDYGRVIYLGTF  241 (403)
T ss_dssp             HHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCC--CCCGG-GGCSSSCEEEEEES
T ss_pred             hhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCC--CCccc-ccCCCCcEEEEccc
Confidence            3333456778889999999999999999999999999999999999999999887532  22221 23455789999999


Q ss_pred             CcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Q 012647          303 SKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQK  382 (459)
Q Consensus       303 SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (459)
                      ||.++ +|+|+||+++   ++++++.+....    .....+++...|.+...++.....    .+.+++.++.++++++.
T Consensus       242 SK~~~-~G~RiG~~i~---~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  309 (403)
T d1wsta1         242 SKILA-PGFRIGWVAA---HPHLIRKMEIAK----QSIDLCTNTFGQAIAWKYVENGYL----DEHIPKIIEFYKPRRDA  309 (403)
T ss_dssp             TTTTC-GGGCCEEEEE---CHHHHHHHHHHH----HHHHSSCCHHHHHHHHHHHHTTHH----HHHHHHHHHHHHHHHHH
T ss_pred             cceec-Cccccccccc---chHHHHHHHHHH----hhhccccccchhhhHHhhhhcccc----chhHHHHHHHHHHHHHH
Confidence            99997 9999999977   888555444332    233446777777777666555433    45578889999999999


Q ss_pred             HHHHHhhccCCCCCcccccCCcceeeecCC----CHHH-HHHHHhcccEEEcCC----------C--cEEEccCChhhHH
Q 012647          383 LFDSLSAKDKSGKDWSFILRQIGMFSFTGL----NKAQ-SDNMTNKWHVYMTKD----------G--RISLAGLSLAKCE  445 (459)
Q Consensus       383 l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l----~~~~-~~~ll~~~gI~v~~g----------g--Ris~~~~~~e~i~  445 (459)
                      +.+.|. +.. +..+.+..|+||+|+|+.+    +.+. ++.|+ ++||.++||          +  ||+|+..++++++
T Consensus       310 ~~~~L~-~~~-~~~~~~~~p~gg~~~~~~~~~~~~~~~~~~~l~-~~gV~v~pg~~f~~~~~~~~~iRi~~~~~~~~~l~  386 (403)
T d1wsta1         310 MLEALE-EYM-PEGVEWTKPEGGMFVRVTLPEGIDTKLMMERAV-AKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIR  386 (403)
T ss_dssp             HHHHHH-HHC-CTTCEECCCSBSSEEEEECCTTCCTTTTHHHHH-HTTEECEEGGGGSTTCCCCSEEEEECSSSCHHHHH
T ss_pred             HHHHHH-hhc-cCCeEEeCCCceeEEEEECCCCCCHHHHHHHHH-HCCEEEEechhhcCCCCCCCEEEEEecCCCHHHHH
Confidence            999998 652 2336788899999999854    3444 45555 569999986          1  9999877899999


Q ss_pred             HHHHHHHHHHhh
Q 012647          446 YLADAIIDSYHN  457 (459)
Q Consensus       446 ~~~~~l~~~~~~  457 (459)
                      +++++|++++++
T Consensus       387 ~al~rl~~~l~~  398 (403)
T d1wsta1         387 EGVRRLAETIKE  398 (403)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998875

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.8e-47  Score=373.65  Aligned_cols=352  Identities=17%  Similarity=0.126  Sum_probs=280.1

Q ss_pred             cCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHH
Q 012647           59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL  138 (459)
Q Consensus        59 ~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~  138 (459)
                      +++....+.+ ++..+..+.+  ..++|||++|.|    ++|+ |+.+.+++++.+++  .++|++..|.++||++||++
T Consensus         4 ~~~~~~~~~~-~~~~~~~la~--~~~~I~ls~g~p----~~~~-p~~i~~al~~~l~~--~~~Y~~~~G~~elr~aiA~~   73 (368)
T d1v2da_           4 HPRTEAAKES-IFPRMSGLAQ--RLGAVNLGQGFP----SNPP-PPFLLEAVRRALGR--QDQYAPPAGLPALREALAEE   73 (368)
T ss_dssp             CGGGGGC----CHHHHHHHHH--HHTCEECCCCSC----SSCC-CHHHHHHHHHHTTT--SCSCCCTTCCHHHHHHHHHH
T ss_pred             ChhhhhcCCC-HHHHHHHHhc--cCCCEEecCCCC----CCCC-CHHHHHHHHHHhhc--ccCCCCCcCCHHHHHHHHhh
Confidence            4444444454 3333333322  246899999998    5554 89999999998864  37899999999999999999


Q ss_pred             HhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeec-CCCCCCCHH
Q 012647          139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD-PKTVGLDFE  217 (459)
Q Consensus       139 l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~-~~~~~~d~e  217 (459)
                      +.-      ++++|++  |+|++++++++  +...+.+||.|++++|+|..+...++..|.+++.++++. .+++.+|++
T Consensus        74 ~~~------~~~~Iii--t~G~~~al~~~--~~~l~~~~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~  143 (368)
T d1v2da_          74 FAV------EPESVVV--TSGATEALYVL--LQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLS  143 (368)
T ss_dssp             HTS------CGGGEEE--ESSHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHH
T ss_pred             ccc------CCcceee--ccchHHHHHHH--hhccccccccccccCCcchhhhhHHHhcCCccceeccccccccccCCHH
Confidence            743      4899999  99999999998  444477999999999999999999999999999888753 356789999


Q ss_pred             HHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEE
Q 012647          218 GMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (459)
Q Consensus       218 ~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i  297 (459)
                      .+++++++   .+++++++|||||||.+++.+++++|+++|++||+++|+||+|..+.....   ...  ......++.+
T Consensus       144 ~l~~~~~~---~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~---~~~--~~~~~~~~~~  215 (368)
T d1v2da_         144 ALEKALTP---RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGER---PRR--LREFAPERTF  215 (368)
T ss_dssp             HHHTTCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC---CCC--HHHHCTTTEE
T ss_pred             HHHHhhcc---CceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhccccc---ccc--cccccccccc
Confidence            99998876   778888999999999999999999999999999999999999987765432   111  1223456788


Q ss_pred             EEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012647          298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  377 (459)
Q Consensus       298 ~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  377 (459)
                      ++.|+||.++++|+|+||+++   +++..+.+....    .....+++.+.|.++..++.....    .+++++.++.++
T Consensus       216 ~~~~~sk~~~~~G~R~g~~~~---~~~~~~~~~~~~----~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~~  284 (368)
T d1v2da_         216 TVGSAGKRLEATGYRVGWIVG---PKEFMPRLAGMR----QWTSFSAPTPLQAGVAEALKLARR----EGFYEALREGYR  284 (368)
T ss_dssp             EEEEHHHHTTCGGGCCEEEEC---CTTTHHHHHHHH----HHHTSSCCHHHHHHHHHHHHHHHH----TTHHHHHHHHHH
T ss_pred             eeecccccccccccccccccc---cccccchhhhhh----hccccccccccccccccccccccc----hhhHHHHHHHHH
Confidence            899999999999999999865   777554444332    233447777888777766654333    345788899999


Q ss_pred             HHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCC----------C--cEEEccCChhhHH
Q 012647          378 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKD----------G--RISLAGLSLAKCE  445 (459)
Q Consensus       378 ~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~g----------g--Ris~~~~~~e~i~  445 (459)
                      ++++++.+.|+ ++|    +++..|++|+|+|++++.....++++++||.++||          |  |||++. ++|+++
T Consensus       285 ~~~~~l~~~l~-~~g----~~~~~p~g~~~~~~~l~~~~~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~-~~e~i~  358 (368)
T d1v2da_         285 RRRDLLAGGLR-AMG----LRVYVPEGTYFLMAELPGWDAFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELH  358 (368)
T ss_dssp             HHHHHHHHHHH-HTT----CCEECCSBSSEEEEECTTCCHHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS-CHHHHH
T ss_pred             HhhhhhhhhHH-hcC----cEEecCCceeEEEEeCCccHHHHHHHhCCEEEEechhhCCCCCCCCEEEEEecC-CHHHHH
Confidence            99999999999 887    68899999999999886555667788899999886          1  999987 899999


Q ss_pred             HHHHHHHHHH
Q 012647          446 YLADAIIDSY  455 (459)
Q Consensus       446 ~~~~~l~~~~  455 (459)
                      +++++|++++
T Consensus       359 ~ai~rL~~~l  368 (368)
T d1v2da_         359 LALERLGRVV  368 (368)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999999874

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=1.7e-41  Score=330.71  Aligned_cols=336  Identities=14%  Similarity=0.126  Sum_probs=256.0

Q ss_pred             CCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCc
Q 012647           67 PDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSV  146 (459)
Q Consensus        67 ~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~  146 (459)
                      ...+.+....+... ..++|||+.|++    .+++ |+.+++++.+....  ...| |..+..+||+++|+++.      
T Consensus         7 gg~~~~~~~~~g~~-p~~~idls~~~n----p~~~-p~~~~~a~~~~~~~--~~~Y-p~~~~~~Lr~aia~~~~------   71 (355)
T d1lc5a_           7 GGNIREPATVLGIS-PDQLLDFSANIN----PLGM-PVSVKRALIDNLDC--IERY-PDADYFHLHQALARHHQ------   71 (355)
T ss_dssp             SCCCHHHHHHHTSC-GGGSEECSSCCC----TTCC-CHHHHHHHHHTGGG--GGSC-CCTTCHHHHHHHHHHHT------
T ss_pred             CCHHHHHHHHhCCC-hhheEEccCCCC----CCCC-CHHHHHHHHHHHHH--hccC-CCCChHHHHHHHHHHhC------
Confidence            44566666666532 347999999975    3443 78899999887754  3567 66678999999999973      


Q ss_pred             cccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC
Q 012647          147 LKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA  226 (459)
Q Consensus       147 ~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~  226 (459)
                      +++++|++  ++|+++++.++.   ..+ .|+.+++..|+|..|.......+++++.+|+..++++.++ +.+++++.+ 
T Consensus        72 v~~~~I~~--~~g~~~~~~~~~---~~~-~~~~~~v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~-  143 (355)
T d1lc5a_          72 VPASWILA--GNGETESIFTVA---SGL-KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLT-DAILEALTP-  143 (355)
T ss_dssp             SCGGGEEE--ESSHHHHHHHHH---HHH-CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCC-TTHHHHCCT-
T ss_pred             CCHHHEEe--cccHHHHHHHHH---hhh-ccccccccCCccceeccccccccccceeeeeeccCCccce-eeeeecccc-
Confidence            34789999  999999888762   223 4577778889999999999999999999999766666666 456665554 


Q ss_pred             CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc
Q 012647          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (459)
Q Consensus       227 ~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  306 (459)
                        ++++++++|||||||.+++.+++++|+++|++|++++|+||+|.++.+.+..  ..   ......+++++++||||.|
T Consensus       144 --~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~--~~---~~~~~~~~~i~~~S~SK~~  216 (355)
T d1lc5a_         144 --DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETG--FI---PALKDNPHIWVLRSLTKFY  216 (355)
T ss_dssp             --TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCC--SG---GGCTTCTTEEEEEESTTTT
T ss_pred             --ccceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeeccc--cc---ccccccccceeeccccccc
Confidence              6778888999999999999999999999999999999999999998865321  11   2234557899999999999


Q ss_pred             ccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          307 GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDS  386 (459)
Q Consensus       307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  386 (459)
                      |++|+|+||+++   +.+..   ...+.... .. .+.+.++|.++..+|++.++       +.+.++.++++++++.+.
T Consensus       217 ~l~GlR~G~~i~---~~~~~---~~~~~~~~-~~-~~~~~~~~~~a~~~l~~~~~-------~~~~~~~~~~~~~~~~~~  281 (355)
T d1lc5a_         217 AIPGLRLGYLVN---SDDAA---MARMRRQQ-MP-WSVNALAALAGEVALQDSAW-------QQATWHWLREEGARFYQA  281 (355)
T ss_dssp             TCTTTCCEEEEC---CCHHH---HHHHHHHS-CT-TCSCHHHHHHHHHGGGCHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccceec---cchhh---hHHHHhhc-CC-ccccccccccccccccccch-------hHHHHHHHHHHHHHHHHH
Confidence            999999999854   44422   22233322 22 36778888998888887533       567788899999999999


Q ss_pred             HhhccCCCCCcccccCCcceeeecCCC---HHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHH
Q 012647          387 LSAKDKSGKDWSFILRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIID  453 (459)
Q Consensus       387 L~~~~g~~~~~~~~~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~  453 (459)
                      |. +++.   +.+ .|.+|+|+|+++.   .+++++|++ +||.++|+.          |||++  +++++++++++|++
T Consensus       282 l~-~~~~---~~~-~p~~~~f~~~~~~~~~~~~~~~L~~-~gv~vr~~~~f~~~~~~~iRis~~--~~~e~~~li~aL~~  353 (355)
T d1lc5a_         282 LC-QLPL---LTV-YPGRANYLLLRCEREDIDLQRRLLT-QRILIRSCANYPGLDSRYYRVAIR--SAAQNERLLAALRN  353 (355)
T ss_dssp             HH-TSTT---EEE-CCCSSSEEEEEESCTTCCHHHHHHT-TTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHH
T ss_pred             Hh-hcCC---cEE-CCCCCEEEEEECCCCHHHHHHHHHH-CCcEEEeCccCCCCCCCEEEEEeC--CHHHHHHHHHHHHH
Confidence            99 8742   454 4667889898652   355666765 599998862          99986  78999999999998


Q ss_pred             HH
Q 012647          454 SY  455 (459)
Q Consensus       454 ~~  455 (459)
                      ++
T Consensus       354 il  355 (355)
T d1lc5a_         354 VL  355 (355)
T ss_dssp             HC
T ss_pred             hC
Confidence            74

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.9e-40  Score=320.28  Aligned_cols=309  Identities=15%  Similarity=0.135  Sum_probs=238.8

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +.++|.|+.|++    .+|+ |+.+.+++.+.+.... .+|.|..|.++||++||+++... +  +++++|++  |+|++
T Consensus        18 ~~d~~~l~~~en----p~~~-p~~i~~~~~~~~~~~~-~~~yp~~g~~~Lr~aia~~~~~~-~--v~~d~I~i--t~G~~   86 (334)
T d2f8ja1          18 KRDKTYLALNEN----PFPF-PEDLVDEVFRRLNSDA-LRIYYDSPDEELIEKILSYLDTD-F--LSKNNVSV--GNGAD   86 (334)
T ss_dssp             CCCSEECSSCCC----SSCC-CHHHHHHHHHHCCTTG-GGSCCCSSCHHHHHHHHHHHTCS-S--CCGGGEEE--EEHHH
T ss_pred             CCCceEEECCCC----CCCC-CHHHHHHHHHHhhcch-hcCCCCCCcHHHHHHHHHHhccc-C--CCcceEEe--cCcch
Confidence            468999999986    4554 7889999888886654 56668899999999999998654 3  56899999  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      ++++++      +.+||+|++++|+|..|...++.+|++++.+|++++  +..+ +    ..   .++++++++||||||
T Consensus        87 ~~l~~l------~~~~d~v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~--~~~~-~----~~---~~~~~~l~l~nP~NP  150 (334)
T d2f8ja1          87 EIIYVM------MLMFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKD--LRIP-E----VN---VGEGDVVFIPNPNNP  150 (334)
T ss_dssp             HHHHHH------HHHSSEEEECSSCCHHHHHHHHHHTCCEEECCCCTT--SCCC-C----CC---CCTTEEEEEESSCTT
T ss_pred             hHHHHH------hhhccccccccccccccccchhccCCcccccccccc--cccc-c----cc---cccceEEEecccccc
Confidence            998876      234799999999999999999999999999999533  2222 1    11   236788889999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.++++++++++    .++++++|+||+|.++.+...   ..    .....+++++++||||.++++|+|+||+++   
T Consensus       151 tG~~~s~~~l~~~----~~~~~~ii~Dd~~~~~~~~~~---~~----~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~---  216 (334)
T d2f8ja1         151 TGHVFEREEIERI----LKTGAFVALDEAYYEFHGESY---VD----FLKKYENLAVIRTFSKAFSLAAQRVGYVVA---  216 (334)
T ss_dssp             TCCCCCHHHHHHH----HTTTCEEEEECTTGGGTCCCC---GG----GGGTCSSEEEEEESTTTSSCTTTCEEEEEE---
T ss_pred             cceeecHHHhhcc----ccceeEEeecccchhhccccc---cc----ccccCceEEEEecCccccchhhhhhhhccc---
Confidence            9999998876654    468999999999988765421   11    124557899999999999999999999977   


Q ss_pred             ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012647          322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL  401 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  401 (459)
                      +++.+++    +.....  ..+.+..+|.++...+.+.+       ++++.++.++++++.+.+.|+ ++|    +++.+
T Consensus       217 ~~~~i~~----l~~~~~--~~~~s~~~~~~a~~~l~~~~-------~~~~~~~~~~~~r~~l~~~L~-~~g----~~~~~  278 (334)
T d2f8ja1         217 SEKFIDA----YNRVRL--PFNVSYVSQMFAKVALDHRE-------IFEERTKFIVEERERMKSALR-EMG----YRITD  278 (334)
T ss_dssp             CHHHHHH----HHHHSC--TTCSCHHHHHHHHHHHHTHH-------HHHHHHHHHHHHHHHHHHHHH-HHT----CEECC
T ss_pred             chHHHHH----HHHhhc--ccccchhhhhhccccccccc-------chhhHHHHHHHHHHHHHHHHH-HCC----CeECC
Confidence            8884444    443332  33677888888877776543       356778899999999999999 988    68888


Q ss_pred             CCcceeeecCCC---H-HHHHHHHhcccEEEcCCC---cEEEccCChhhHHHHHHHHHH
Q 012647          402 RQIGMFSFTGLN---K-AQSDNMTNKWHVYMTKDG---RISLAGLSLAKCEYLADAIID  453 (459)
Q Consensus       402 ~~~g~f~~~~l~---~-~~~~~ll~~~gI~v~~gg---Ris~~~~~~e~i~~~~~~l~~  453 (459)
                      ++|+ |+|+.+.   . ++.+.|++ +||.+++..   |||++  +.||++.++++|++
T Consensus       279 ~~g~-f~~~~~~~~~~~~~~~~L~~-~GI~vr~~~~~vRis~g--~~ee~~~l~~~l~~  333 (334)
T d2f8ja1         279 SRGN-FVFVFMEKEEKERLLEHLRT-KNVAVRSFREGVRITIG--KREENDMILRELEV  333 (334)
T ss_dssp             CCSS-EEEEECCHHHHHHHHHHHHH-TTEECEEETTEEEEECC--CHHHHHHHHHHHHH
T ss_pred             CCce-EEEEECCCCCHHHHHHHHHH-CCCEECCCCCeEEEEcC--CHHHHHHHHHHHhc
Confidence            8776 6676553   2 34556655 699987643   99997  67888999988875

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1e-38  Score=310.73  Aligned_cols=313  Identities=17%  Similarity=0.205  Sum_probs=236.7

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      .+..|.|+.+++    ..++ ++.+.+        ...++| |..+..+||+++|+++.      +++++|++  |+|++
T Consensus        26 ~~~~i~L~~ne~----p~~~-~~~~~~--------~~l~rY-Pd~~~~~Lr~~ia~~~g------v~pe~I~i--t~Gs~   83 (354)
T d1fg7a_          26 GNGDVWLNANEY----PTAV-EFQLTQ--------QTLNRY-PECQPKAVIENYAQYAG------VKPEQVLV--SRGAD   83 (354)
T ss_dssp             TTCSEECSSCCC----SSCC-CCCCCC--------CCTTSC-CCSSCHHHHHHHHHHHT------SCGGGEEE--ESHHH
T ss_pred             CCCCEEeeCCCC----CCCC-CHHHHH--------HHHhcC-CCCcHHHHHHHHHHHhC------CChHHeee--ccCch
Confidence            346788888764    1221 222211        123678 66677899999999973      34899999  99999


Q ss_pred             hHHHHHHHHHHHhCCCC-EEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012647          162 GSLRLAAALIERYFPGA-KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd-~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N  240 (459)
                      +++.++  +...+.||| .|+++.|+|..|...++..|.+++.++.  ++++.+|++.++.++.    +++++++++|||
T Consensus        84 eai~~~--~~~~~~pgd~~Vl~~~P~y~~~~~~~~~~g~~v~~~~~--~~~~~~d~~~l~~~~~----~~~~v~~~~pnN  155 (354)
T d1fg7a_          84 EGIELL--IRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPT--LDNWQLDLQGISDKLD----GVKVVYVCSPNN  155 (354)
T ss_dssp             HHHHHH--HHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCC--CTTSCCCHHHHHTSCT----TEEEEEEESSCT
T ss_pred             HHHHHH--HHHhhccccccccccccccccchhhhhccCceeecccc--ccccccchhhhhhccc----ccceeeccCCCc
Confidence            999998  444467998 5888999999999999999999999988  4578999999987653    688999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012647          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (459)
Q Consensus       241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~  320 (459)
                      |||.+++.++++.+.+.++ ++.++|+||+|.++.++.   ..   .......+++++++||||.||++|+|+||+++  
T Consensus       156 PtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~---~~---~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~--  226 (354)
T d1fg7a_         156 PTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQA---SL---AGWLAEYPHLAILRTLSKAFALAGLRCGFTLA--  226 (354)
T ss_dssp             TTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGG---CS---GGGTTTCTTEEEEEESSSTTCCGGGCCEEEEE--
T ss_pred             cceeEeeeccccccccccc-ccccccccccchhhcccc---cc---chhhcccccceEEeCCccccCCCccccccccc--
Confidence            9999999999999988776 678888899988887542   11   12234567899999999999999999999977  


Q ss_pred             CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012647          321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  400 (459)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  400 (459)
                       +++.++.    +.+.... + +.+..+|..+..++.+..+     +......+++.++|+.+.+.+. +++.   +..+
T Consensus       227 -~~~~i~~----l~~~~~~-~-~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~r~~l~~~l~-~~~~---~~~~  290 (354)
T d1fg7a_         227 -NEEVINL----LMKVIAP-Y-PLSTPVADIAAQALSPQGI-----VAMRERVAQIIAEREYLIAALK-EIPC---VEQV  290 (354)
T ss_dssp             -CHHHHHH----HHHHSCS-S-CSCHHHHHHHHHHTSHHHH-----HHHHHHHHHHHHHHHHHHHHHH-HSTT---EEEE
T ss_pred             -cchhhhh----hhhhcCc-c-chhhHHHHHHHHHHhhhcc-----ccccccchhhhhHHHHHHHHHH-hCCC---ccee
Confidence             8885444    4443332 2 4566667666666655432     2345666778889999999999 8762   4456


Q ss_pred             cCCcceeeecCCC--HHHHHHHHhcccEEEcCCC---------cEEEccCChhhHHHHHHHHH
Q 012647          401 LRQIGMFSFTGLN--KAQSDNMTNKWHVYMTKDG---------RISLAGLSLAKCEYLADAII  452 (459)
Q Consensus       401 ~~~~g~f~~~~l~--~~~~~~ll~~~gI~v~~gg---------Ris~~~~~~e~i~~~~~~l~  452 (459)
                      .|.+++|+|+.+.  .++++.|++ +||.+++++         |||++  ++|+++.++++|+
T Consensus       291 ~p~~~~f~~~~~~~~~~~~~~L~~-~gIlvr~~~~~~~~~~~lRisig--t~ee~~~~l~aLk  350 (354)
T d1fg7a_         291 FDSETNYILARFKASSAVFKSLWD-QGIILRDQNKQPSLSGCLRITVG--TREESQRVIDALR  350 (354)
T ss_dssp             CCCSSSEEEEEETTHHHHHHHHHH-TTEECEECTTSTTCTTEEEEECC--CHHHHHHHHHHHH
T ss_pred             CCCCceEEEEeCCCHHHHHHHHHH-CCcEEecCCCCCCCCCEEEEEeC--CHHHHHHHHHHHh
Confidence            6778899998663  344666665 699998863         99986  7788999999886

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=100.00  E-value=6.2e-35  Score=287.66  Aligned_cols=326  Identities=11%  Similarity=0.064  Sum_probs=228.7

Q ss_pred             CCceeecccccCCCCCCccCcH-HHHHHHHHHh-hcC-CCCCCCCCcc----cHHHHHHHHHHHhcCCCCccccCceEEe
Q 012647           83 EKKLNLGVGAYRTEELQPYVLD-VVKKAENLML-ERG-ENKEYLPIEG----LAAFNKVTAELLFGADNSVLKEQRVATV  155 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~-~v~~a~~~~~-~~~-~~~~Y~~~~g----~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (459)
                      ..++|+..|+|    .+.  .| ....+...+. ..+ +...|.-..+    .++|+++|+++.....+...+..+|++ 
T Consensus        56 ~~~~~~~~gdp----~~~--~~~w~~~~~~~~~~~~~~~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~Ivv-  128 (425)
T d2hoxa1          56 GCSADVASGDG----LFL--EEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVF-  128 (425)
T ss_dssp             TCCEECCSCCC----GGG--HHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEE-
T ss_pred             CceeeCCCCCC----CCC--CHHHHhCcccceEEeecccccceecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEE-
Confidence            57899999998    332  23 2222222222 122 1233443322    289999999986655555555667999 


Q ss_pred             ecccchhHHHHHHHHHHH--------hCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCC
Q 012647          156 QGLSGTGSLRLAAALIER--------YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP  227 (459)
Q Consensus       156 ~t~ggt~a~~l~~~~~~~--------~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~  227 (459)
                       ++|++++++++  +.++        +.|||+|+++.|+|+.|....+..|.+...++.        |.+.+++++++  
T Consensus       129 -G~Gsteli~~~--~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~~~~~--------D~~~~~~~~~~--  195 (425)
T d2hoxa1         129 -GVGVTQLIHGL--VISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAG--------NAANYVNVSNP--  195 (425)
T ss_dssp             -ESHHHHHHHHH--HHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEEEE--------EGGGGTTCSCG--
T ss_pred             -CCCHHHHHHHH--HHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCCCCccCC--------CHHHHHhhCCC--
Confidence             99999999998  4443        468999999999999999999999887665554        55666666654  


Q ss_pred             CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc
Q 012647          228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (459)
Q Consensus       228 ~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (459)
                       +++++++||||||||.+..          +..+++.+|.||+|.+..+.+.          ....+++++++||||.||
T Consensus       196 -~~~ii~l~sPnNPtG~l~~----------~v~~~~~~I~DEaY~~~~f~~~----------~~~~~~~Ivl~S~SK~fg  254 (425)
T d2hoxa1         196 -EQYIEMVTSPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHYTPI----------KYKADEDILLFTMSKFTG  254 (425)
T ss_dssp             -GGEEEEEESSCTTTCCCCC----------CSSTTCEEEEECTTCSTTTSCC----------CSCBCCSEEEEEHHHHTS
T ss_pred             -CceEEEEECCCCCCcchhh----------hhhhCCEEEEeccccCccccch----------hhhcCCeEEEEeCHHhcc
Confidence             7889999999999998732          2346999999999976554321          123468999999999999


Q ss_pred             cCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhh-HHH----HHHHHHHHHHHHHHHHHH
Q 012647          308 LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPAL-FDE----WKAEMEMMAGRIKNVRQK  382 (459)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~-~~~----~~~~~~~~~~~~~~~~~~  382 (459)
                      ++|||+||+  +++++...+++.    ........+++.++|.++..+|++... ...    .++.++..++.++++++.
T Consensus       255 laGlRiGw~--i~~~~~i~~~~~----~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~  328 (425)
T d2hoxa1         255 HSGSRFGWA--LIKDESVYNNLL----NYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVN  328 (425)
T ss_dssp             CGGGCCEEE--EECCHHHHHHHH----HHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHH
T ss_pred             CcchheeeE--EeCCHHHHHHHH----HhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998  456666444443    333344568899999988877754211 000    023467778899999999


Q ss_pred             HHHHHhhccCC------CCC-----cccccCCcceeeecCC---CHHHHHHHHhcccEEEcCCC---------cEEEccC
Q 012647          383 LFDSLSAKDKS------GKD-----WSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKDG---------RISLAGL  439 (459)
Q Consensus       383 l~~~L~~~~g~------~~~-----~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~gg---------Ris~~~~  439 (459)
                      +.+.|. +.+.      |..     +....+..+.|.|+..   +.+++.++++++||.++||.         |||+.. 
T Consensus       329 l~~~L~-~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~~~~~~~lL~e~gI~v~pGs~FG~~~~yvRisl~~-  406 (425)
T d2hoxa1         329 ITALLD-QSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIK-  406 (425)
T ss_dssp             HHHHHT-TSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSS-
T ss_pred             HHHHHH-hcCCceeeccCCccceeeeeeccCCCcceeeeeCCCChHHHHHHHHHhCCEEEEechhcCCCCCEEEEEecC-
Confidence            999998 7652      000     0111233344667643   23457778888999999972         999988 


Q ss_pred             ChhhHHHHHHHHHHHHhh
Q 012647          440 SLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       440 ~~e~i~~~~~~l~~~~~~  457 (459)
                      ++|++++++++|+++++.
T Consensus       407 ~~e~ld~~l~rL~~~v~a  424 (425)
T d2hoxa1         407 TQDDFDQLMYYLKDMVKA  424 (425)
T ss_dssp             CHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHHHhc
Confidence            889999999999999874

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=6.3e-26  Score=222.73  Aligned_cols=325  Identities=15%  Similarity=0.107  Sum_probs=213.6

Q ss_pred             cccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC-CC-----------cccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           91 GAYRTEELQPYVLDVVKKAENLMLERGENKEYL-PI-----------EGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        91 g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~-~~-----------~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      .+|+|..+..++++.|.++|.+++...  ..|+ |.           .-++++|+.+|++++..      +++|++  |+
T Consensus         3 ~iYlD~aa~~p~~~~v~ea~~~~~~~~--~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~------~~~I~~--~~   72 (391)
T d1p3wa_           3 PIYLDYSATTPVDPRVAEKMMQFMTMD--GTFGNPASRSHRFGWQAEEAVDIARNQIADLVGAD------PREIVF--TS   72 (391)
T ss_dssp             SEECBTTTCCCCCHHHHHHHHTTTSTT--SCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCC------GGGEEE--ES
T ss_pred             eEEeeCccccCCCHHHHHHHHHHHHhc--cccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCC------CCcEEE--EC
Confidence            357787777777999999999987542  2332 21           12457899999998654      789999  99


Q ss_pred             cchhHHHHHHHHHH--HhCCCCEEEEcCCCCcchHHHhh---hCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEE
Q 012647          159 SGTGSLRLAAALIE--RYFPGAKVLISSPTWGNHKNIFN---DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL  233 (459)
Q Consensus       159 ggt~a~~l~~~~~~--~~~~gd~Vlv~~p~y~~~~~~~~---~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~i  233 (459)
                      |+|++++.+...+.  .+.+||+|++.++.|+.+...++   ..|++++.+|.+  +++.+|++.+++++++   +|+++
T Consensus        73 ~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~~~~~i~~---~T~lv  147 (391)
T d1p3wa_          73 GATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQ--RNGIIDLKELEAAMRD---DTILV  147 (391)
T ss_dssp             SHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCC--TTSCCCHHHHHHHCCT---TEEEE
T ss_pred             CHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCC--CCCeEcHHHHHHhCCC---CcEEE
Confidence            99999998754432  24699999999999988765554   569999999984  4668999999999986   89999


Q ss_pred             EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc
Q 012647          234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI  313 (459)
Q Consensus       234 i~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri  313 (459)
                      ++++++||||.+++   +++|+++|++||+++++|.++. ++..+.+.         ...+.++++.|++|.+|++|  +
T Consensus       148 ~is~~~n~tG~~~~---~~~I~~~~~~~~~~~ivD~~~~-~g~~~~d~---------~~~~~D~~~~s~~k~~g~~g--~  212 (391)
T d1p3wa_         148 SIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQS-VGKLPIDL---------SQLKVDLMSFSGHKIYGPKG--I  212 (391)
T ss_dssp             ECCSBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTT-BTTBCCCT---------TTSCCSEEEEESTTTTSCSS--C
T ss_pred             EEECCCCCCeeECC---HHHHHHHhccCCcEEEEeeccc-cCCccccc---------hhccccccccccccccCCCc--e
Confidence            99999999999965   5679999999999999999854 44322221         22345678889999999887  6


Q ss_pred             ceEEEEeCChhHHHHHHHHHH---hhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012647          314 GAMNVVCSSSDLAARVKSQLK---RLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK  390 (459)
Q Consensus       314 G~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  390 (459)
                      |++++   .++..........   ..........+..........+      ..+.+......++++++++.+.+.|. +
T Consensus       213 g~~~~---~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~l~~~L~-~  282 (391)
T d1p3wa_         213 GALYV---RRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAY------RIAKEEMATEMERLRGLRNRLWNGIK-D  282 (391)
T ss_dssp             EEEEE---CBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHTTT-T
T ss_pred             EEEEE---ecchhcccCCcccCCccccCcccCcchhhhhhhhhhhh------hHHHHHhhHHHHHHHHHHHHHHHHHH-h
Confidence            77755   4331111100000   0000111122222222211111      11123344556677788888888887 6


Q ss_pred             cCCCCCcccc----cCCcceeeecCCCHHHHHHHHhcccEEEcCC-------------------------C--cEEEccC
Q 012647          391 DKSGKDWSFI----LRQIGMFSFTGLNKAQSDNMTNKWHVYMTKD-------------------------G--RISLAGL  439 (459)
Q Consensus       391 ~g~~~~~~~~----~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~g-------------------------g--Ris~~~~  439 (459)
                      ++... +...    .+....|.+.+...+.+...++  ++.++.|                         |  |||++..
T Consensus       283 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~  359 (391)
T d1p3wa_         283 IEEVY-LNGDLEHGAPNILNVSFNYVEGESLIMALK--DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRF  359 (391)
T ss_dssp             STTEE-ECSCTTTSCTTEEEEEETTSCHHHHHHHTT--TEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTT
T ss_pred             hcCee-ecccccccCceEEEEEeCCCChHHHHHHhC--CCEEEccccccCCccchhHHHHHcCCCccccCCEEEEecCCC
Confidence            64200 0111    1122234455666655444433  4544322                         2  9998866


Q ss_pred             -ChhhHHHHHHHHHHHHhhc
Q 012647          440 -SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       440 -~~e~i~~~~~~l~~~~~~~  458 (459)
                       |++||++++++|+++++++
T Consensus       360 nt~edid~l~~~l~~~l~~l  379 (391)
T d1p3wa_         360 TTEEEIDYTIELVRKSIGRL  379 (391)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHH
Confidence             7899999999999999875

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.94  E-value=2.5e-26  Score=223.13  Aligned_cols=291  Identities=12%  Similarity=0.028  Sum_probs=187.7

Q ss_pred             cHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeee
Q 012647          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY  207 (459)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~  207 (459)
                      .+.+++.+|++++.        +++++  |+|||+|+.++  +.+.+.|||+|+++.++|......++..|++++.+|++
T Consensus        49 ~~~~~~~~A~~~g~--------e~~~~--t~g~t~a~~~~--~~al~~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~  116 (364)
T d2e7ja1          49 HDFIHNQLPKFLGC--------DVARV--TNGAREAKFAV--MHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKT  116 (364)
T ss_dssp             HHHHHTHHHHHTTS--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCC
T ss_pred             HHHHHHHHHHHhCc--------CEEEE--ECcHHHHHHHH--HHHHhCCCcEEEeecccccccchHHHhccceEEEeeec
Confidence            35678899998643        56888  99999999998  55557899999999999988888889999999999997


Q ss_pred             cCCCCCCCHHHHHHHHHcCC--CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhH
Q 012647          208 DPKTVGLDFEGMIADIKAAP--GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASS  285 (459)
Q Consensus       208 ~~~~~~~d~e~l~~~i~~~~--~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~  285 (459)
                      +..++.+|++.+++.+++..  .+++++++++|+||||.+   .++++|+++|++||+++++|++|......   .+   
T Consensus       117 ~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~---~~l~~I~~ia~~~~i~livD~a~~~g~~~---~~---  187 (364)
T d2e7ja1         117 DYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNL---PDVKKIAKVCSEYDVPLLVNGAYAIGRMP---VS---  187 (364)
T ss_dssp             CTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCC---CCHHHHHHHHHTTTCCEEEECTTTBTTBC---CC---
T ss_pred             cccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCcee---ecchhheeccccccchhhccccchhhhhh---hc---
Confidence            66678999999999997632  346788889999999999   55788999999999999999997533221   11   


Q ss_pred             HHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhc--cccc--cCCchHHHHHHHHHhCChhh
Q 012647          286 VRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLA--RPMY--SNPPVHGARIVANVVGNPAL  361 (459)
Q Consensus       286 ~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~L~~~~~  361 (459)
                      ...    .+.++++.|+||.++.+| ++||+++   +++..+.+........  ...+  ..........+...+.    
T Consensus       188 ~~~----~g~D~~~~S~~K~~~~~g-~~g~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----  255 (364)
T d2e7ja1         188 LKE----IGADFIVGSGHKSMAASG-PIGVMGM---KEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFP----  255 (364)
T ss_dssp             HHH----HTCSEEEEEHHHHSSCCS-SCEEEEE---CTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHH----
T ss_pred             ccc----cccceeeeccccccCCCC-CEEEEEE---CHHHHHHHHhhccccCcccccccccccchhHHHHHHHHHH----
Confidence            111    134588899999999776 7999866   6553322211100000  0000  0111111111111111    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc--cCCc--ceeeecCC----------CHHHHHHHHhcccEE
Q 012647          362 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI--LRQI--GMFSFTGL----------NKAQSDNMTNKWHVY  427 (459)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~--~~~~--g~f~~~~l----------~~~~~~~ll~~~gI~  427 (459)
                        ...+.++...+.+ ++++++.+.|+ ++|+    ...  .+..  ..|.....          ...+....+.+.++.
T Consensus       256 --~~~~~~~~~~~~~-~~~~~~~~~l~-~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  327 (364)
T d2e7ja1         256 --HVRERIKRWDEEV-EKARRFAAEME-KLGI----KQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIH  327 (364)
T ss_dssp             --HHHHHGGGHHHHH-HHHHHHHHHHH-HTTC----EEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHHHHHTTEE
T ss_pred             --HHHHHHHHHHHHH-HHHHHHHHHHH-HcCC----eecCCCCCCcceEEEeccchHHHHHHhhccchHHHHHHHhcCCc
Confidence              1122233333333 35567778888 7763    322  1211  22222110          112233344445776


Q ss_pred             EcCCC-----cEEEccCChhhHHHHHHHHHHHHhhcC
Q 012647          428 MTKDG-----RISLAGLSLAKCEYLADAIIDSYHNVS  459 (459)
Q Consensus       428 v~~gg-----Ris~~~~~~e~i~~~~~~l~~~~~~~~  459 (459)
                      ....|     |++..+.++|+|++++++|++++++.|
T Consensus       328 ~~~~g~~~~~~~~~~~~t~edid~~~~~l~ei~~~ys  364 (364)
T d2e7ja1         328 GIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKYS  364 (364)
T ss_dssp             CSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred             eecCCCcceEEEeccCCCHHHHHHHHHHHHHHHHHhC
Confidence            54433     555434589999999999999999875

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=5.5e-27  Score=227.98  Aligned_cols=322  Identities=12%  Similarity=0.050  Sum_probs=201.8

Q ss_pred             CCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           80 DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        80 ~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      .+.+.+++++....    . +++++...+.+    +    ..+.+..+.+++++..++.+....     .+++++  |+|
T Consensus        17 ~g~~~i~~~~gl~~----~-~~~~~~~~~~~----~----~~~~~~~~~~~l~~~~~~~~~~~~-----~e~~~~--~~~   76 (366)
T d2aeua1          17 KGRDALYDLSGLSG----G-FLIDEKDKALL----N----TYIGSSYFAEKVNEYGLKHLGGDE-----NDKCVG--FNR   76 (366)
T ss_dssp             TCGGGCEECSSCCC----C-CCCCHHHHHHH----T----STTHHHHHHHHHHHHHHHHHTCCT-----TEEEEE--ESS
T ss_pred             hccchHhhhccCCC----C-CCccHHHHHHH----H----HhcCchhhHHHHHHHHHHHccCCC-----ccEEEE--eCC
Confidence            34456778864432    2 33355444433    1    223355577899999998876542     467888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEE--cCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCC
Q 012647          160 GTGSLRLAAALIERYFPGAKVLI--SSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv--~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~  237 (459)
                      +++++..+  +. .+.+||.|++  +.|+|..+...++..|++++  +.  +     |+|++++++++   +++++++++
T Consensus        77 ~~~a~~~~--l~-al~~~~~vi~~~~~~~~~~~~~~~~l~g~~~v--~~--~-----d~e~l~~~i~~---~tk~i~~~~  141 (366)
T d2aeua1          77 TSSAILAT--IL-ALKPKKVIHYLPELPGHPSIERSCKIVNAKYF--ES--D-----KVGEILNKIDK---DTLVIITGS  141 (366)
T ss_dssp             HHHHHHHH--HH-HHCCSEEEEECSSSSCCTHHHHHHHHTTCEEE--EE--S-----CHHHHHTTCCT---TEEEEEECB
T ss_pred             HHHHHHHH--HH-HhCCCCEEEEecCCCcchhHHHHHHhcCCeEE--CC--C-----CHHHHHHhcCC---CceEEEEEe
Confidence            99999887  44 3667777655  35899999999999998753  33  1     78999988876   899999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEE
Q 012647          238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (459)
Q Consensus       238 p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (459)
                      |+||+  +++.+++++|+++|++||+++++||+|....++... .....    . ...++++.|+||.+  +|||+||++
T Consensus       142 p~n~~--~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~-~~~~~----~-~~~di~~~S~sK~~--~g~~~G~i~  211 (366)
T d2aeua1         142 TMDLK--VIELENFKKVINTAKNKEAIVFVDDASGARVRLLFN-QPPAL----K-LGADLVVTSTDKLM--EGPRGGLLA  211 (366)
T ss_dssp             CTTSC--BCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTT-CCCHH----H-HTCSEEEEETTSSS--SSCSCEEEE
T ss_pred             cCCCC--cCCHHHHHHHHHHhccCcEEEEEecCcccccccccc-CCCHh----h-cCceEEEecccccc--cccceeEEE
Confidence            99985  456799999999999999999999999765443110 11111    1 12458889999976  589999987


Q ss_pred             EEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Q 012647          318 VVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDW  397 (459)
Q Consensus       318 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~  397 (459)
                      +   ++++++++...    ++....+++...|.++...|+..+.. ..+++.++.++......+.+..... .... ..+
T Consensus       212 ~---~~~~i~~~~~~----~~~~g~~~~~~~~~a~~~aL~tl~~~-r~~~~~~~~~~i~~~~~~~~~~~~~-~~~~-~~~  281 (366)
T d2aeua1         212 G---KKELVDKIYIE----GTKFGLEAQPPLLAGIYRALKNFNLE-RIRKAFERAKNFDLSKIEKLNKELK-AIDD-NIN  281 (366)
T ss_dssp             E---EHHHHHHHHHH----HHTTTCBCCHHHHHHHHHHHHHCCHH-HHHHHHHHHHHCCCHHHHHHHHHHT-TTCT-TEE
T ss_pred             e---cHHHHHHHHHH----HhcccccCCHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHhhhhcccc-cccc-ccC
Confidence            7   88865555443    33444456666677665555321110 0111111111111112222222222 1110 001


Q ss_pred             ccccCCcceeeecCC----------CHHHHHHHHhcccEEEcCC-----C----cEEEccCChhh--HHHHHHHHHHHHh
Q 012647          398 SFILRQIGMFSFTGL----------NKAQSDNMTNKWHVYMTKD-----G----RISLAGLSLAK--CEYLADAIIDSYH  456 (459)
Q Consensus       398 ~~~~~~~g~f~~~~l----------~~~~~~~ll~~~gI~v~~g-----g----Ris~~~~~~e~--i~~~~~~l~~~~~  456 (459)
                      ....+.+.+|+|.+.          +.+++.+|++++||.+.|+     +    ||||+..+.++  .++++++|.+.++
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ll~~~gV~~ip~~~~p~~~~~lRis~~~~~~~~i~~d~l~~ai~~~lK  361 (366)
T d2aeua1         282 IVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIK  361 (366)
T ss_dssp             EEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHH
T ss_pred             cccccCccchhccCCCcceeecccCHHHHHHHHHHhCCEEEEECCCCCCCCCEEEEeccccchhhCCHHHHHHHHHHHHH
Confidence            223344556666532          2356788999999999886     2    99998643333  4677777766665

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.4e-23  Score=206.68  Aligned_cols=323  Identities=13%  Similarity=0.096  Sum_probs=223.9

Q ss_pred             ccCCCCCCccCcHHHHHHHHHHhhcCCCCCC-CC-------CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhH
Q 012647           92 AYRTEELQPYVLDVVKKAENLMLERGENKEY-LP-------IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (459)
Q Consensus        92 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y-~~-------~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (459)
                      .|+|..+..++|+.|.+++.+.+.....+.. +.       ..-+++.|+.+|++++...     +++|++  +.++|++
T Consensus        24 iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~-----~~~i~~--~~~~T~~   96 (405)
T d1jf9a_          24 AYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARS-----AEELVF--VRGTTEG   96 (405)
T ss_dssp             EECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSC-----GGGEEE--ESSHHHH
T ss_pred             EEEeCccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCC-----cccccc--cCcHHHH
Confidence            3666666666799999999988754221111 11       1236788999999987542     578999  9999999


Q ss_pred             HHHHHHHHH--HhCCCCEEEEcCCCCcch----HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCC
Q 012647          164 LRLAAALIE--RYFPGAKVLISSPTWGNH----KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (459)
Q Consensus       164 ~~l~~~~~~--~~~~gd~Vlv~~p~y~~~----~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~  237 (459)
                      ++.++..+.  .+.+||+|++.+-.|+..    ....+..|++++.+|++  .++.+|++.+++++++   +|+++.++.
T Consensus        97 ~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~--~~g~~~~~~~~~~i~~---~t~lv~~~~  171 (405)
T d1jf9a_          97 INLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLN--PDGTLQLETLPTLFDE---KTRLLAITH  171 (405)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBC--TTSCBCGGGHHHHCCT---TEEEEEEES
T ss_pred             HHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCC--CCCcCCHHHHHHhccC---CcEEEEEec
Confidence            998754432  245899999999998764    44445679999999984  4578999999998876   899999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEE
Q 012647          238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (459)
Q Consensus       238 p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (459)
                      .+|.||.+   .++++|+++|+++|+++++|.+ +..+.-+.+         +...+.++++.|++|.+|++|  +|+++
T Consensus       172 v~~~tG~~---~pi~~i~~~~~~~g~~~~vD~~-q~~g~~~id---------~~~~~~D~~~~s~hK~~Gp~G--~g~l~  236 (405)
T d1jf9a_         172 VSNVLGTE---NPLAEMITLAHQHGAKVLVDGA-QAVMHHPVD---------VQALDCDFYVFSGHKLYGPTG--IGILY  236 (405)
T ss_dssp             BCTTTCCB---CCHHHHHHHHHHTTCEEEEECT-TTTTTSCCC---------HHHHTCSEEEEEGGGTTSCSS--CEEEE
T ss_pred             CCCccccc---CchHHhhhHHHHcCCeeecccc-eeccccccc---------hhhcCCceeeccccccccCCC--ceeee
Confidence            99999999   6677799999999999999999 655543221         122345789999999999888  78887


Q ss_pred             EEeCChhHHHHHHHHHHhhc----------------------cccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012647          318 VVCSSSDLAARVKSQLKRLA----------------------RPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR  375 (459)
Q Consensus       318 ~v~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~  375 (459)
                      +   +++..    +.+....                      +...++++..+..++...++   +..  +..++.+.++
T Consensus       237 v---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~---~~~--~~g~~~i~~~  304 (405)
T d1jf9a_         237 V---KEALL----QEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALE---YVS--ALGLNNIAEY  304 (405)
T ss_dssp             E---CHHHH----TTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHH---HHH--HHCHHHHHHH
T ss_pred             e---chhhh----cccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHH---HHH--HhChHHHHHH
Confidence            7   66622    2111100                      01112333333333333321   111  1235677777


Q ss_pred             HHHHHHHHHHHHhhccCCCCCcccccC--Ccceeee--cCCCHHHHHHHHhcccEEEcCC--------------C--cEE
Q 012647          376 IKNVRQKLFDSLSAKDKSGKDWSFILR--QIGMFSF--TGLNKAQSDNMTNKWHVYMTKD--------------G--RIS  435 (459)
Q Consensus       376 ~~~~~~~l~~~L~~~~g~~~~~~~~~~--~~g~f~~--~~l~~~~~~~ll~~~gI~v~~g--------------g--Ris  435 (459)
                      ...+.+++.+.++ .++.   .....+  ..+.+.+  .+...+.+..+++++||.++.|              |  |||
T Consensus       305 ~~~L~~~~~~~l~-~~~~---~~~~~~~~r~~ivsf~~~~~~~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS  380 (405)
T d1jf9a_         305 EQNLMHYALSQLE-SVPD---LTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRAS  380 (405)
T ss_dssp             HHHHHHHHHHHHT-TSTT---EEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEE
T ss_pred             HHHHHHHHHhhhh-cCCc---ccccCCcCcCcEEEEEcCCCCHHHHHHHHHHCCcEEEccchhhhhHHHhcCCCCEEEEE
Confidence            7888888888888 7652   222222  2344433  3566777666777889998643              2  999


Q ss_pred             EccC-ChhhHHHHHHHHHHHHhh
Q 012647          436 LAGL-SLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       436 ~~~~-~~e~i~~~~~~l~~~~~~  457 (459)
                      ++.+ |++||+.++++|+++.+-
T Consensus       381 ~~~ynt~eDid~l~~~l~~i~r~  403 (405)
T d1jf9a_         381 LAMYNTHEEVDRLVTGLQRIHRL  403 (405)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHh
Confidence            9876 789999999999998864

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.91  E-value=2e-22  Score=198.49  Aligned_cols=325  Identities=12%  Similarity=0.089  Sum_probs=223.8

Q ss_pred             ccCCCCCCccCcHHHHHHHHHHhhcCCCC--C--CCC----CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhH
Q 012647           92 AYRTEELQPYVLDVVKKAENLMLERGENK--E--YLP----IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (459)
Q Consensus        92 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~~--~--Y~~----~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (459)
                      .|+|..+..++|+.|.+++.+.+.....+  .  |..    ..-+++.|+.++++++...     ++.+++  +.+++++
T Consensus        24 iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~-----~~~i~~--~~~tt~~   96 (408)
T d1t3ia_          24 VYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARS-----PREIVY--TRNATEA   96 (408)
T ss_dssp             EECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSC-----GGGEEE--ESSHHHH
T ss_pred             EEeeCccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCC-----cccEEe--ecchHHH
Confidence            46666666677999999999987542211  1  100    1234578999999987653     577888  8999999


Q ss_pred             HHHHHHHHH--HhCCCCEEEEcCCCCcchHH----HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCC
Q 012647          164 LRLAAALIE--RYFPGAKVLISSPTWGNHKN----IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (459)
Q Consensus       164 ~~l~~~~~~--~~~~gd~Vlv~~p~y~~~~~----~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~  237 (459)
                      ++++.....  .+.+||+|++.+-.|+....    ..+..|+++..+|.  +.+...|.+.+++.+++   +++++.++.
T Consensus        97 ~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~--~~~~~~~~~~l~~~~~~---~t~lv~i~~  171 (408)
T d1t3ia_          97 INLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQL--DEQESFDLEHFKTLLSE---KTKLVTVVH  171 (408)
T ss_dssp             HHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECB--CTTSSBCHHHHHHHCCT---TEEEEEEES
T ss_pred             HHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeec--cccccccHHHhhhccCC---CceEEEEec
Confidence            998754422  34589999999988875433    44567999999998  44667899999998875   899999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEE
Q 012647          238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (459)
Q Consensus       238 p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  317 (459)
                      .+|-||..   .++++|.++|+++|+++++|.+ |.++.-+.+         +...+.++++.|.+|.+|++|  +|+++
T Consensus       172 ~~~~tG~~---~p~~~i~~~~~~~g~~~ivDa~-q~~g~~~id---------~~~~~~D~~~~s~hK~~gp~G--~g~l~  236 (408)
T d1t3ia_         172 ISNTLGCV---NPAEEIAQLAHQAGAKVLVDAC-QSAPHYPLD---------VQLIDCDWLVASGHKMCAPTG--IGFLY  236 (408)
T ss_dssp             BCTTTCBB---CCHHHHHHHHHHTTCEEEEECT-TTTTTSCCC---------HHHHTCSEEEEEGGGTTSCTT--CEEEE
T ss_pred             cccccccc---CcHHHHhhhhhccCceeeeccc-eeccccccc---------ccccCCceEEeccccccCCCC--ccccc
Confidence            99999999   5566789999999999999999 766654332         122245788999999988777  78887


Q ss_pred             EEeCChhHHHHHHHHHHhhc---------------------cccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012647          318 VVCSSSDLAARVKSQLKRLA---------------------RPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI  376 (459)
Q Consensus       318 ~v~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~  376 (459)
                      +   .++.    ........                     +...++++..+..++...++   +..  ...++++.++.
T Consensus       237 v---~~~~----~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~---~~~--~~g~~~i~~~~  304 (408)
T d1t3ia_         237 G---KEEI----LEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVD---YLT--DLGMENIHNYE  304 (408)
T ss_dssp             E---CHHH----HHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHH---HHH--HHCHHHHHHHH
T ss_pred             c---chhh----hhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHH---HHH--HcCHHHHHHHH
Confidence            6   6663    22221110                     00112233333333333221   111  12357778888


Q ss_pred             HHHHHHHHHHHhhccCCCCCccccc------CCccee--eecCCCHHHHHHHHhcccEEEcCC--------------C--
Q 012647          377 KNVRQKLFDSLSAKDKSGKDWSFIL------RQIGMF--SFTGLNKAQSDNMTNKWHVYMTKD--------------G--  432 (459)
Q Consensus       377 ~~~~~~l~~~L~~~~g~~~~~~~~~------~~~g~f--~~~~l~~~~~~~ll~~~gI~v~~g--------------g--  432 (459)
                      .++.+++.+.+. +.+.   +....      ..++..  .+.+.+.+.+...|+++||.++.|              |  
T Consensus       305 ~~l~~~l~~~~~-~~~~---~~~~~~~~~~~~~~~iv~f~~~~~~~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~v  380 (408)
T d1t3ia_         305 VELTHYLWQGLG-QIPQ---LRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSA  380 (408)
T ss_dssp             HHHHHHHHHHHH-TCTT---EEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCE
T ss_pred             HHHHhHHhhhhc-cCcc---ccccCCCccccCcceEEEEEeCCCCHHHHHHHHhhCCcEEecCcccccHHHHhhcCCccE
Confidence            888899998888 6632   22221      223443  345677777666677789998754              2  


Q ss_pred             cEEEccC-ChhhHHHHHHHHHHHHhhcC
Q 012647          433 RISLAGL-SLAKCEYLADAIIDSYHNVS  459 (459)
Q Consensus       433 Ris~~~~-~~e~i~~~~~~l~~~~~~~~  459 (459)
                      |||+..+ |++||++++++|+++++.++
T Consensus       381 RiS~~~ynt~~did~li~~L~~~~~~f~  408 (408)
T d1t3ia_         381 RASLYFYNTKEEIDLFLQSLQATIRFFS  408 (408)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHHHHTC
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHhC
Confidence            9999876 78999999999999998765

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.91  E-value=2.9e-24  Score=209.95  Aligned_cols=325  Identities=14%  Similarity=0.046  Sum_probs=199.9

Q ss_pred             ccCCCCCCccCcHHHHHHHHHHhhc---CCCCCCCC----CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHH
Q 012647           92 AYRTEELQPYVLDVVKKAENLMLER---GENKEYLP----IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSL  164 (459)
Q Consensus        92 ~~~~~~~~~~~~~~v~~a~~~~~~~---~~~~~Y~~----~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~  164 (459)
                      .|+|..+..+.|..|.+++.+.+..   .....+..    ..-+.++|+.+|++++..      +++|++  |+|+|+++
T Consensus         9 ~yld~~~~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~------~~~i~~--~~g~t~a~   80 (381)
T d1elua_           9 TYFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVD------PNTITI--TDNVTTGC   80 (381)
T ss_dssp             EECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSC------GGGEEE--ESSHHHHH
T ss_pred             EEeeCCcccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCC------cccEEE--ECChHHHh
Confidence            4555555556688889988887632   11111211    122457888999997644      789999  99999999


Q ss_pred             HHHHHHHHH-hCCCCEEEEcCCCCcchHH----HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCC
Q 012647          165 RLAAALIER-YFPGAKVLISSPTWGNHKN----IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (459)
Q Consensus       165 ~l~~~~~~~-~~~gd~Vlv~~p~y~~~~~----~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~  239 (459)
                      +++  +.+. +.+||+|+++++.|+....    ..+..|++++.+|.++......+.+.+++.++   ++++++++++++
T Consensus        81 ~~~--~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~---~~t~~v~i~~~~  155 (381)
T d1elua_          81 DIV--LWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLG---PKTRLVILSHLL  155 (381)
T ss_dssp             HHH--HHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCC---TTEEEEEEESBC
T ss_pred             hhc--chhhhhcCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhc---cccccccccccc
Confidence            998  3333 4599999999999976544    44457999999998533222222445555554   488999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHh----cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcce
Q 012647          240 NPTGIDPTPEQWEKIADVIQE----KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA  315 (459)
Q Consensus       240 NPTG~~~s~~~l~~i~~l~~~----~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~  315 (459)
                      ||||.+++.+   +|.++|++    +++++++|.++ .++....+         +...+.++++.|++|.++. ..++|+
T Consensus       156 n~tG~~~~~~---~I~~l~~~~~~~~~~~~~vD~~~-~~g~~~~~---------~~~~~~D~~~~s~~K~~~~-p~G~g~  221 (381)
T d1elua_         156 WNTGQVLPLA---EIMAVCRRHQGNYPVRVLVDGAQ-SAGSLPLD---------FSRLEVDYYAFTGHKWFAG-PAGVGG  221 (381)
T ss_dssp             TTTCCBCCHH---HHHHHHHHCCSSSCCEEEEECTT-TBTTBCCC---------TTTSCCSEEEEESSSTTCC-CTTCEE
T ss_pred             ccccccchhh---HHHHHHhhccccccccccccccc-cccccccc---------ccccccccccccccccccc-cchhhH
Confidence            9999996655   57777776    46999999984 44432211         1233467889999999873 345788


Q ss_pred             EEEEeCChhHHHHHHHHHHhh------------------ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012647          316 MNVVCSSSDLAARVKSQLKRL------------------ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  377 (459)
Q Consensus       316 ~~~v~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  377 (459)
                      +++   .++..+.+.......                  .+.....++.....++...+.   +... .-..+...++..
T Consensus       222 l~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~---~~~~-~g~~~~~~~~~~  294 (381)
T d1elua_         222 LYI---HGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQ---LHQR-QGTAEERYQAIC  294 (381)
T ss_dssp             EEE---CTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHH---HHHH-HCCHHHHHHHHH
T ss_pred             HHh---hHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhh---hHHH-hcccccchhhhh
Confidence            866   444222211000000                  000111233322222222221   0000 001244557788


Q ss_pred             HHHHHHHHHHhhccCCCCCcccc---cCCcceeeec--C-CCHHHHHHHHhcccEEEcCC---C--cEEEccC-ChhhHH
Q 012647          378 NVRQKLFDSLSAKDKSGKDWSFI---LRQIGMFSFT--G-LNKAQSDNMTNKWHVYMTKD---G--RISLAGL-SLAKCE  445 (459)
Q Consensus       378 ~~~~~l~~~L~~~~g~~~~~~~~---~~~~g~f~~~--~-l~~~~~~~ll~~~gI~v~~g---g--Ris~~~~-~~e~i~  445 (459)
                      ++++++.+.|+ +++.   ++++   .+.++++.|.  + ...+.+.+.|+++||.++..   +  |||++.+ |++||+
T Consensus       295 ~~~~~l~~~L~-~~~~---~~~~~~~~~~~~~vsf~~~~~~~~~~i~~~L~~~gi~v~~~~~~~~lRis~~~~nt~edid  370 (381)
T d1elua_         295 QRSEFLWRGLN-QLPH---VHCLATSAPQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEIN  370 (381)
T ss_dssp             HHHHHHHHHHH-HSTT---EEESCSSCCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHH
T ss_pred             hHHHHHHHHHh-cCCC---eEecCCCCccccEEEEEcCCCCCHHHHHHHHHhCCcEEEecCCCCEEEEecCCCCCHHHHH
Confidence            88899999998 7631   4443   3456665442  2 34555556666679987532   2  9998755 789999


Q ss_pred             HHHHHHHHH
Q 012647          446 YLADAIIDS  454 (459)
Q Consensus       446 ~~~~~l~~~  454 (459)
                      +++++|+++
T Consensus       371 ~ll~~l~e~  379 (381)
T d1elua_         371 HLLARLADF  379 (381)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHHhh
Confidence            999998753

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=1.9e-22  Score=196.50  Aligned_cols=325  Identities=13%  Similarity=0.083  Sum_probs=211.5

Q ss_pred             ccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCC-------CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHH
Q 012647           92 AYRTEELQPYVLDVVKKAENLMLERGENKEYLP-------IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSL  164 (459)
Q Consensus        92 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~-------~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~  164 (459)
                      +|+|..+..++|+.|.+++.+.+.+...+....       ..-+++.|+.++++++..      +++|++  +.|+|+++
T Consensus         3 iyld~a~~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~------~~~i~~--~~~~T~~l   74 (376)
T d1eg5a_           3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVS------PSEIFF--TSCATESI   74 (376)
T ss_dssp             EECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSC------GGGEEE--ESCHHHHH
T ss_pred             EEEECcccccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCC------CCcEEE--ECCHHHHH
Confidence            356666666669999999999886432111100       112456789999998654      789999  99999999


Q ss_pred             HHHHHHHH--HhCCCCEEEEcCCCCcchHHHh---hhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCC
Q 012647          165 RLAAALIE--RYFPGAKVLISSPTWGNHKNIF---NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (459)
Q Consensus       165 ~l~~~~~~--~~~~gd~Vlv~~p~y~~~~~~~---~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~  239 (459)
                      +.+...+.  ...+|+.|++....|..+...+   +..|++++.+|++  +++.+|++++++++++   ++++++++.++
T Consensus        75 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~--~~~~id~~~l~~~i~~---~t~lv~is~v~  149 (376)
T d1eg5a_          75 NWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVD--SRGVVKLEELEKLVDE---DTFLVSIMAAN  149 (376)
T ss_dssp             HHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBC--TTSCBCHHHHHHHCCT---TEEEEEEESBC
T ss_pred             HhhhhcccccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCC--CCCeECHHHHHHhcCC---CceEEEEECCc
Confidence            99854332  2347889999888887665544   4669999999984  4678999999999986   89999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEE
Q 012647          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (459)
Q Consensus       240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v  319 (459)
                      |+||...+.+++.++++ |++.++++++|.+ +.++..+.+         +...+.++++.|++|.+|++|.+++|+   
T Consensus       150 ~~tG~~~~~~~i~~~~~-~~~~~~~~~vD~~-q~~g~~~~d---------~~~~~~D~~~~s~~K~~gp~G~~~l~~---  215 (376)
T d1eg5a_         150 NEVGTIQPVEDVTRIVK-KKNKETLVHVDAV-QTIGKIPFS---------LEKLEVDYASFSAHKFHGPKGVGITYI---  215 (376)
T ss_dssp             TTTCBBCCHHHHHHHHH-HHCTTCEEEEECT-TTTTTSCCC---------CTTTCCSEEEEEGGGGTSCTTCEEEEE---
T ss_pred             cccceeeeehhhhhhhh-hcccCceeEEEee-ecccccccc---------ccccCccceecccceeecCCCceeEEe---
Confidence            99999966666555443 2445999999999 555543221         123356799999999999998654443   


Q ss_pred             eCChhHHHHHHHHHHh---hccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 012647          320 CSSSDLAARVKSQLKR---LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKD  396 (459)
Q Consensus       320 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~  396 (459)
                        .++..  +......   .........+..+.........      .+................++.+.|. ..+.   
T Consensus       216 --~~~~~--~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~---  281 (376)
T d1eg5a_         216 --RKGVP--IRPLIHGGGQERGLRSGTQNVPGIVGAARAME------IAVEELSEAAKHMEKLRSKLVSGLM-NLGA---  281 (376)
T ss_dssp             --CTTSC--CCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHH------HHHHTHHHHHHHHHHHHHHHHHHHH-TTTC---
T ss_pred             --ccCcc--cCCcccCCCCcccccCCcccchhhhhHHHHhh------ccccchhhhhhhhhhhhhhhccccc-cccc---
Confidence              22210  1100000   0001111223333222222211      1122234555566667777788877 5431   


Q ss_pred             cccc----cCCc--ceeeecCCCHHHHHHHHhcccEEEcCC-----------------C----------cEEEccC-Chh
Q 012647          397 WSFI----LRQI--GMFSFTGLNKAQSDNMTNKWHVYMTKD-----------------G----------RISLAGL-SLA  442 (459)
Q Consensus       397 ~~~~----~~~~--g~f~~~~l~~~~~~~ll~~~gI~v~~g-----------------g----------Ris~~~~-~~e  442 (459)
                       ...    ....  ..+.+.++..+.+...++++||.++.|                 |          |||++.+ |+|
T Consensus       282 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~e  360 (376)
T d1eg5a_         282 -HIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEE  360 (376)
T ss_dssp             -EECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHH
T ss_pred             -cccccccccccceeeeccCCCCHHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHH
Confidence             111    1111  223445677777777788889988754                 1          9998866 789


Q ss_pred             hHHHHHHHHHHHHhhc
Q 012647          443 KCEYLADAIIDSYHNV  458 (459)
Q Consensus       443 ~i~~~~~~l~~~~~~~  458 (459)
                      ||+.++++|+++++-|
T Consensus       361 did~l~~~L~~iv~~l  376 (376)
T d1eg5a_         361 EVDYFLKKIEEILSFL  376 (376)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhhC
Confidence            9999999999998753

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=3.9e-21  Score=186.93  Aligned_cols=323  Identities=13%  Similarity=0.092  Sum_probs=220.0

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhc-C-----CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-G-----ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~-----~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (459)
                      +...+||+...|+   +... .|.+.++..+.+++ +     ...-++...-+.+|.+.+|+++..        +..++ 
T Consensus        37 g~~~l~f~s~dYL---Gl~~-~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g~--------e~al~-  103 (383)
T d1bs0a_          37 DRQYLNFSSNDYL---GLSH-HPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGY--------SRALL-  103 (383)
T ss_dssp             TEEEEECSCCCTT---SGGG-CHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTC--------SEEEE-
T ss_pred             CeEEEEEEccccc---ccCC-CHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhcCC--------CceEE-
Confidence            3578999988774   4332 78888888888754 1     111233344568999999999743        45556 


Q ss_pred             ecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEe
Q 012647          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (459)
Q Consensus       156 ~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~  235 (459)
                       .++|..++..+  +.....++|.|++....+.......+..+++++.++.       .|.+++++.+...++..+++++
T Consensus       104 -~~SG~~an~~~--i~al~~~~d~v~~d~~~h~si~~g~~~~~~~~~~~~h-------nd~~~le~~l~~~~~~~~~vv~  173 (383)
T d1bs0a_         104 -FISGFAANQAV--IAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVVT  173 (383)
T ss_dssp             -ESCHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEEE
T ss_pred             -ecccchhhHHH--HHhhcCCCceEEeeccccHHHhhccccCCCcceEecc-------hHHHHHHHHhcccCCCceEEEe
Confidence             68888888887  4444679999999999998888888888888887765       3789999998887677888889


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcce
Q 012647          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA  315 (459)
Q Consensus       236 ~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~  315 (459)
                      +.+++.+|.+   .++++|.++|++||+++++||++.....+.   ........... ...+.+.|++|.+|.+|   |+
T Consensus       174 e~v~s~~G~i---~pl~~l~~l~~~~~~~livDeah~~gv~G~---~g~G~~~~~~~-~~~~~~~t~~ka~g~~G---g~  243 (383)
T d1bs0a_         174 EGVFSMDGDS---APLAEIQQVTQQHNGWLMVDDAHGTGVIGE---QGRGSCWLQKV-KPELLVVTFGKGFGVSG---AA  243 (383)
T ss_dssp             ESBCTTTCCB---CCHHHHHHHHHHTTCEEEEECTTTTTTSSG---GGCCHHHHTTC-CCSEEEEESSSTTSSCC---EE
T ss_pred             cCCCCCCCcc---cchhHHHHHHHhcCcEEEeecceeeeecCC---cccchHHHcCC-ccccccccccccccccc---cc
Confidence            9999999999   456678888999999999999977665542   22222233233 34566789999999776   77


Q ss_pred             EEEEeCChhHHHHHHHHHHhhccccccCCchHHHHH-HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 012647          316 MNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARI-VANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG  394 (459)
Q Consensus       316 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  394 (459)
                      +.+   +.+..+.++............+++..++.. +..++..        ...+..+.+..++..++.+.|. ++|  
T Consensus       244 v~~---~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~--------~~~~~~~~~l~~~~~~~~~~l~-~~g--  309 (383)
T d1bs0a_         244 VLC---SSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRS--------DEGDARREKLAALITRFRAGVQ-DLP--  309 (383)
T ss_dssp             EEE---CHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHS--------HHHHHHHHHHHHHHHHHHHHHT-TSS--
T ss_pred             ccc---chhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHHh--------hhhHHHHHHHHHHHHHHHHHHH-hcC--
Confidence            755   778666665443333222221222222111 1222222        1235667788888899999999 887  


Q ss_pred             CCcccccCCcce-eeecCCCH---HHHHHHHhcccEEEcC-------CC----cEEEccC-ChhhHHHHHHHHHHH
Q 012647          395 KDWSFILRQIGM-FSFTGLNK---AQSDNMTNKWHVYMTK-------DG----RISLAGL-SLAKCEYLADAIIDS  454 (459)
Q Consensus       395 ~~~~~~~~~~g~-f~~~~l~~---~~~~~ll~~~gI~v~~-------gg----Ris~~~~-~~e~i~~~~~~l~~~  454 (459)
                        +........+ .++++...   ++.++|++ +||++.+       -|    ||+++.. |+|+|++++++|..+
T Consensus       310 --~~~~~~~s~Ii~v~~g~~~~a~~~~~~L~~-~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~  382 (383)
T d1bs0a_         310 --FTLADSCSAIQPLIVGDNSRALQLAEKLRQ-QGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN  382 (383)
T ss_dssp             --CEECSCCSSBCCEEEESHHHHHHHHHHHHH-TTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             --CccCCCCCCEEEEEECCHHHHHHHHHHHHH-CCceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence              3544444332 35555322   44567766 5998753       33    8888754 999999999999764

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=4.4e-23  Score=197.19  Aligned_cols=313  Identities=14%  Similarity=0.029  Sum_probs=194.8

Q ss_pred             cHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEE
Q 012647          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLI  182 (459)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv  182 (459)
                      +|++++||.++.. + ...|++.....+|++.+|+++..        +++++  ++|||+|+.++  +.....+||.+++
T Consensus        13 ~p~v~~A~~~a~~-g-~~~yg~~p~~~~le~~lA~~~G~--------~~~~~--~~sGt~A~~~a--l~a~~~~g~~~~~   78 (343)
T d1m6sa_          13 TEEMRKAMAQAEV-G-DDVYGEDPTINELERLAAETFGK--------EAALF--VPSGTMGNQVS--IMAHTQRGDEVIL   78 (343)
T ss_dssp             CHHHHHHHHTCCC-C-CGGGTCCHHHHHHHHHHHHHTTC--------SEEEE--ESCHHHHHHHH--HHHHCCTTCEEEE
T ss_pred             CHHHHHHHHhhhc-C-CcccCCCHHHHHHHHHHHHHHCC--------CeEEE--eCCHHHHHHHH--HHHHhccCCceec
Confidence            7899999987643 2 35688888999999999999632        45777  89999999888  4555679999999


Q ss_pred             cCCCCcchHHHh---hhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC----CCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 012647          183 SSPTWGNHKNIF---NDARVPWSEYRYYDPKTVGLDFEGMIADIKAA----PGGSFILLHGCAHNPTGIDPTPEQWEKIA  255 (459)
Q Consensus       183 ~~p~y~~~~~~~---~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~----~~~~~~ii~~~p~NPTG~~~s~~~l~~i~  255 (459)
                      ..+.+..+....   ...+..+..++.   ..+..|++.+++.+...    +....+++.+.++|+.|.+.+.+++++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~  155 (343)
T d1m6sa_          79 EADSHIFWYEVGAMAVLSGVMPHPVPG---KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEIC  155 (343)
T ss_dssp             ETTCHHHHSSTTHHHHHTCCEEEEECE---ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHH
T ss_pred             cccccceeeecccccccccceeecccc---ccCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHH
Confidence            999886554332   233444445544   24567999999998752    12234556778899999999999999999


Q ss_pred             HHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHh
Q 012647          256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKR  335 (459)
Q Consensus       256 ~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~  335 (459)
                      ++|++||+++++|++|..+.....   ...... ........ +  ++|..+..|.+.|+...   ..+...........
T Consensus       156 ~~~~~~g~~~~~D~a~~~~~~~~~---~~~~~~-~~~~~~~~-~--~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~  225 (343)
T d1m6sa_         156 TIAKEHGINVHIDGARIFNASIAS---GVPVKE-YAGYADSV-M--FCLSKGLCAPVGSVVVG---DRDFIERARKARKM  225 (343)
T ss_dssp             HHHHHHTCEEEEEETTHHHHHHHH---CCCHHH-HHHTCSEE-E--EESSSTTCCSSCEEEEE---CHHHHHHHHHHHHH
T ss_pred             HHHHhcCeEEEecccccccccccc---ccchhh-hccccccc-c--ccccccccccccccccc---cHHHHhhhHhhCcc
Confidence            999999999999999775542210   001111 11122222 2  33333445666777655   66644443332222


Q ss_pred             hccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC---
Q 012647          336 LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---  412 (459)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l---  412 (459)
                         ... +.+..+..++......        .......+...++...+.+.+. +++.   .....+...+++|+.+   
T Consensus       226 ---~~~-~~~~~~~~~a~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~v~~~~~~~  289 (343)
T d1m6sa_         226 ---LGG-GMRQAGVLAAAGIIAL--------TKMVDRLKEDHENARFLALKLK-EIGY---SVNPEDVKTNMVILRTDNL  289 (343)
T ss_dssp             ---HTC-CCSSTHHHHHHHHHHH--------HHSSTTHHHHHHHHHHHHHHHH-HHTC---BCCGGGCCSSEEEEECTTS
T ss_pred             ---ccc-ccchhHHHHHhhhhhh--------hhhHHHHHHHHHHHHHhhhHHH-Hhcc---CccCCCCCceEEEEEeCCC
Confidence               112 2222222222111100        0011222333444455555555 5432   2333344455666533   


Q ss_pred             --C-HHHHHHHHhcccEEEcCCC----cEEEcc-CChhhHHHHHHHHHHHHhhcC
Q 012647          413 --N-KAQSDNMTNKWHVYMTKDG----RISLAG-LSLAKCEYLADAIIDSYHNVS  459 (459)
Q Consensus       413 --~-~~~~~~ll~~~gI~v~~gg----Ris~~~-~~~e~i~~~~~~l~~~~~~~~  459 (459)
                        + .++.+.|++ +||.+.+.|    ||+++. .|+|+|++++++|+++++++|
T Consensus       290 ~~~a~~l~~~L~~-~Gi~v~~~~~~~iRi~~~~~~t~edid~~v~~l~~v~~~~~  343 (343)
T d1m6sa_         290 KVNAHGFIEALRN-SGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKFS  343 (343)
T ss_dssp             SSCHHHHHHHHHH-HTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred             cccHHHHHHHHHH-CCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHhC
Confidence              3 355667666 599998865    888753 389999999999999999976

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.88  E-value=6.4e-21  Score=184.70  Aligned_cols=327  Identities=16%  Similarity=0.077  Sum_probs=217.1

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhc-C-----CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-G-----ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~-----~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (459)
                      +.+++||+...|+   +... .|.++++..+.++. +     ...-++...-..+|.+.+|+++..        +..++ 
T Consensus        44 ~~~~~~FsSndYL---GL~~-~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g~--------e~all-  110 (396)
T d2bwna1          44 KQDITVWCGNDYL---GMGQ-HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK--------EAALV-  110 (396)
T ss_dssp             EEEEEECSCSCTT---SGGG-CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC--------SEEEE-
T ss_pred             CeEEEEEEccccc---CcCC-CHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhCC--------Cceee-
Confidence            3578999998885   3332 78899988888753 1     111122233457899999999643        34445 


Q ss_pred             ecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC-CCCcEEEE
Q 012647          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA-PGGSFILL  234 (459)
Q Consensus       156 ~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~-~~~~~~ii  234 (459)
                       .++|..++..+...+....+||.|+...-.+......++..+++++.++.+       |.+.+++.++.. +.+.++|+
T Consensus       111 -~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~Hn-------d~~~l~~l~~~~~~~~~~~iv  182 (396)
T d2bwna1         111 -FSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDPAAPKLIA  182 (396)
T ss_dssp             -ESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCTTSCEEEE
T ss_pred             -eecchHHHHHHHHHHhcccCCCceeehhhhhhccchhhhccccCceEeecc-------hHHHhhhHHhhhcccCceeEE
Confidence             577777777764444446789999999988888888899999999888762       567776666542 34567888


Q ss_pred             eCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcc
Q 012647          235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIG  314 (459)
Q Consensus       235 ~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG  314 (459)
                      +......+|.+   .++++|.++|++||+++++||++.-..++.. .... ...+-.....+++++||||.+|..|   |
T Consensus       183 ~egvySmdGd~---apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~-G~G~-~~~~~~~~~~di~~gTlsKa~g~~G---g  254 (396)
T d2bwna1         183 FESVYSMDGDF---GPIKEICDIAEEFGALTYIDEVHAVGMYGPR-GAGV-AERDGLMHRIDIFNGTLAKAYGVFG---G  254 (396)
T ss_dssp             EESBCTTTCCB---CCHHHHHHHHHHHTCEEEEECTTTTTTSSTT-SCCH-HHHHTCGGGCSEEEEESSSTTCSCC---E
T ss_pred             EEeeccCcccc---cccHhHHHHhhhhcceeeeccceeeeeeccc-cccc-hhhcCCceeeeeeeecccccccccc---c
Confidence            88899999999   6678899999999999999999655554421 1111 1122112345788999999999876   7


Q ss_pred             eEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHH--HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          315 AMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIV--ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       315 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                      ++.+   +++.++.++......... ...+|..+..+.  ..++....        -++.+..+..+.+++.+.|. ++|
T Consensus       255 ~v~~---~~~~i~~l~~~~~~~ifS-talpp~~~aa~~~al~i~~~~~--------~~~~r~~l~~~~~~~~~~l~-~~g  321 (396)
T d2bwna1         255 YIAA---SARMVDAVRSYAPGFIFS-TSLPPAIAAGAQASIAFLKTAE--------GQKLRDAQQMHAKVLKMRLK-ALG  321 (396)
T ss_dssp             EEEE---CHHHHHHHHHHCHHHHTS-BCCCHHHHHHHHHHHHHHTSHH--------HHHHHHHHHHHHHHHHHHHH-HHT
T ss_pred             ccch---hHHHHHHHHhhcchhhhc-ccCcHHHHHHHHHHHHHhhcch--------HHHHHHHHHHHHHHHHHHHH-hcC
Confidence            7644   888666665543332222 212222221111  22333321        24567777788888999998 887


Q ss_pred             CCCCcccccCCcce-eeecCCC---HHHHHHHHhcccEEEcC-------CC----cEEEccC-ChhhHHHHHHHHHHH
Q 012647          393 SGKDWSFILRQIGM-FSFTGLN---KAQSDNMTNKWHVYMTK-------DG----RISLAGL-SLAKCEYLADAIIDS  454 (459)
Q Consensus       393 ~~~~~~~~~~~~g~-f~~~~l~---~~~~~~ll~~~gI~v~~-------gg----Ris~~~~-~~e~i~~~~~~l~~~  454 (459)
                      +    .....+... .+++|..   .++.++|++++||++.+       -|    ||+++.. |+++|++++++|+++
T Consensus       322 ~----~~~~~~spIvpv~ig~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~i  395 (396)
T d2bwna1         322 M----PIIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLL  395 (396)
T ss_dssp             C----CBCCCSSSCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             C----CcCCCCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence            3    444433333 3566653   24456788778997654       23    8887654 899999999999886

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=9e-21  Score=185.40  Aligned_cols=330  Identities=8%  Similarity=0.046  Sum_probs=216.6

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC-------CCcccHHHHHHHHHHHhcCCCCccccCceEE
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL-------PIEGLAAFNKVTAELLFGADNSVLKEQRVAT  154 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~-------~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (459)
                      +...+||+...|+   +... +|.|.++..+.+++.- ..+.       ...-..+|.+.+|+++..        +.+++
T Consensus        44 G~~~l~f~s~dYL---Gl~~-hp~v~~a~~~a~~~~g-~~~~~sr~~~g~~~~~~~lE~~lA~~~g~--------e~al~  110 (401)
T d1fc4a_          44 GSHVINFCANNYL---GLAN-HPDLIAAAKAGMDSHG-FGMASVRFICGTQDSHKELEQKLAAFLGM--------EDAIL  110 (401)
T ss_dssp             SCEEEECCCSCTT---SCTT-CHHHHHHHHHHHHHHC-SCCCSCHHHHCCBHHHHHHHHHHHHHHTC--------SEEEE
T ss_pred             CCEEEEEEccccc---cccC-CHHHHHHHHHHHHHhC-CCcccceeeccCcHHHHHHHHHHHHhhcC--------CceEE
Confidence            3568999887774   3332 7889998888875411 1121       234456899999999643        55777


Q ss_pred             eecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEE
Q 012647          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILL  234 (459)
Q Consensus       155 ~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii  234 (459)
                        +++|+.++..+  +.....++|.|++..-.+..+...+...++++..++..+    --|++.+.+.++..+...++++
T Consensus       111 --~~SG~~An~~~--i~~l~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~~d----~~~le~~~~~~~~~~~~~~liv  182 (401)
T d1fc4a_         111 --YSSCFDANGGL--FETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANND----MQELEARLKEAREAGARHVLIA  182 (401)
T ss_dssp             --ESCHHHHHHTT--HHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECTTC----HHHHHHHHHHHHHTTCSSEEEE
T ss_pred             --ecchhhhhHHH--HHHhcCCCcEEEeCCcchHHHHccccccCceEEEEcCCC----hHHHHHHHHHhhhcccCceEEE
Confidence              89999999987  444467999999999999988888888888888776521    1134444444544445667777


Q ss_pred             eCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEEcCCcCcccCCCCc
Q 012647          235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAERI  313 (459)
Q Consensus       235 ~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~Ri  313 (459)
                      +.+..+..|.+   .++++|.++|++||+++|+||++.....+..   ...+..... ..+.++++.||+|.+|  |...
T Consensus       183 ~egv~s~~G~~---~~L~~l~~L~~~~~a~LivDeah~~g~~g~~---G~G~~~~~~~~~~~dii~~tl~Ka~g--g~~G  254 (401)
T d1fc4a_         183 TDGVFSMDGVI---ANLKGVCDLADKYDALVMVDDSHAVGFVGEN---GRGSHEYCDVMGRVDIITGTLGKALG--GASG  254 (401)
T ss_dssp             EESEETTTTEE---CCHHHHHHHHHHTTEEEEEECTTTTTTSSTT---SCCHHHHTTCTTCCSEEEEESSSTTC--SSSC
T ss_pred             EcCCCCCCCch---hhhhHHHHHHhhcCcEEEehhhhccccccCC---CCccchhccCCCCCeEEEeecccccc--cCCc
Confidence            77777788877   5688899999999999999999877665521   112222222 2345688999999995  3323


Q ss_pred             ceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012647          314 GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  393 (459)
Q Consensus       314 G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  393 (459)
                      |++.+   +.+.++.+.......... . ..+.....++...+..       ....++.+++++++.+++.+.+. +.| 
T Consensus       255 g~v~g---~~~~~~~l~~~~~~~~~s-~-~l~p~~~~aa~~~l~~-------~~~~~~~~~~l~~~~~~~~~~l~-~~g-  320 (401)
T d1fc4a_         255 GYTAA---RKEVVEWLRQRSRPYLFS-N-SLAPAIVAASIKVLEM-------VEAGSELRDRLWANARQFREQMS-AAG-  320 (401)
T ss_dssp             EEEEE---CHHHHHHHHHHCHHHHHS-C-CCCHHHHHHHHHHHHH-------HHTCHHHHHHHHHHHHHHHHHHH-HTT-
T ss_pred             ccccC---CHHHHHHHHcCChhhhhc-C-CCCHHHHHHHHhhhcc-------cccCHHHHHHHHHHHHHHHhhhc-ccC-
Confidence            66544   888665554432222111 1 2222222222222211       11125667888888999999998 877 


Q ss_pred             CCCcccccCCccee-eecCCC---HHHHHHHHhcccEEEcC-------CC----cEEEcc-CChhhHHHHHHHHHHHHhh
Q 012647          394 GKDWSFILRQIGMF-SFTGLN---KAQSDNMTNKWHVYMTK-------DG----RISLAG-LSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       394 ~~~~~~~~~~~g~f-~~~~l~---~~~~~~ll~~~gI~v~~-------gg----Ris~~~-~~~e~i~~~~~~l~~~~~~  457 (459)
                         +.....+..+. ++++..   .++.++|++ +||++.+       -|    ||+++. .|+|+|++++++|+++.++
T Consensus       321 ---~~~~~~~~pIv~v~~~~~~~a~~~~~~L~~-~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~  396 (401)
T d1fc4a_         321 ---FTLAGADHAIIPVMLGDAVVAQKFARELQK-EGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQ  396 (401)
T ss_dssp             ---CCBCCSSSSEEEEEEECHHHHHHHHHHHHH-TTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ---CccCCCCCCEEEEEECCHHHHHHHHHHHHH-CCceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence               34444444433 444432   245667766 5998753       33    888764 4999999999999999988


Q ss_pred             c
Q 012647          458 V  458 (459)
Q Consensus       458 ~  458 (459)
                      +
T Consensus       397 l  397 (401)
T d1fc4a_         397 L  397 (401)
T ss_dssp             T
T ss_pred             h
Confidence            6

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.85  E-value=6.6e-20  Score=173.21  Aligned_cols=317  Identities=13%  Similarity=0.013  Sum_probs=196.5

Q ss_pred             cHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEE
Q 012647          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLI  182 (459)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv  182 (459)
                      +|.|++|+.+..... ...|++..+.+++|+.+++++...      +++|++  |+|||++++++  +...+.+++.+++
T Consensus        13 ~P~v~eAl~~~~~~~-~~~y~~~~~~~~lr~~ia~~~g~~------~~~v~~--tsggtean~~a--~~~~~~~~~~~~~   81 (340)
T d1svva_          13 HPKILDLMARDNMTQ-HAGYGQDSHCAKAARLIGELLERP------DADVHF--ISGGTQTNLIA--CSLALRPWEAVIA   81 (340)
T ss_dssp             CHHHHHHHHHHTTCC-CCSTTCSHHHHHHHHHHHHHHTCT------TSEEEE--ESCHHHHHHHH--HHHHCCTTEEEEE
T ss_pred             CHHHHHHHHHHhhcC-CCCCCCCHHHHHHHHHHHHHhCCC------cceEEE--cCCHHHHHHHH--HHHHhhhcccccc
Confidence            789999999876543 477888888999999999998643      678999  99999999998  4455779999999


Q ss_pred             cCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 012647          183 SSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQ  259 (459)
Q Consensus       183 ~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~  259 (459)
                      ..+.+..+.......+.....+... ......+.+........   .......++++...|++|.+...+++..+.+.|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (340)
T d1svva_          82 TQLGHISTHETGAIEATGHKVVTAP-CPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCK  160 (340)
T ss_dssp             ETTSHHHHSSTTHHHHTTCCEEEEC-CTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHH
T ss_pred             ccccceeeeecccccccceeeeecc-cccccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccc
Confidence            9988776544333333333333332 12233444444444332   1122334444555666778888899999999999


Q ss_pred             hcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccc
Q 012647          260 EKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARP  339 (459)
Q Consensus       260 ~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~  339 (459)
                      ++|.++++|++|........ ............  ..+...+..|..+..  +.++...   ..............  ..
T Consensus       161 ~~g~~~~~d~a~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~--~~  230 (340)
T d1svva_         161 EHGLYLFLDGARLASALSSP-VNDLTLADIARL--TDMFYIGATKAGGMF--GEALIIL---NDALKPNARHLIKQ--RG  230 (340)
T ss_dssp             HHTCEEEEECTTHHHHHTST-TCCCCHHHHHHH--CSEEEEECTTTTCSS--CEEEEEC---SGGGCTTHHHHHHH--TT
T ss_pred             cccceeeeeccceeeeeccc-cccccccccccc--ceeeecCCccccccc--ccccccc---chhhhhhhhhhccc--cc
Confidence            99999999999854322111 111111111111  234444555554433  3444422   33322222222111  11


Q ss_pred             cccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHH
Q 012647          340 MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDN  419 (459)
Q Consensus       340 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~  419 (459)
                      ........+..++...+.+..+        ....++...+++++.+.|+ +.|    +++..|..+.++|..++.+...+
T Consensus       231 ~~~~~~~~~~aa~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~-~~g----~~~~~p~~~~~v~~~~~~~~~~~  297 (340)
T d1svva_         231 ALMAKGWLLGIQFEVLMKDNLF--------FELGAHSNKMAAILKAGLE-ACG----IRLAWPSASNQLFPILENTMIAE  297 (340)
T ss_dssp             CCCTTTHHHHHHHHHHTSTTHH--------HHHHHHHHHHHHHHHHHHH-HTT----CCBSSCCSSSEECBEEEHHHHHH
T ss_pred             CccchhhHHHHHHHHHhhhhHH--------HHHHHHHHHHHhhhHHHHh-cCC----CeeecCCCceEEEEeCCHHHHHH
Confidence            1212223333333444444322        3456677778888899999 887    57776766778888888888888


Q ss_pred             HHhc---ccEEEcCCC----cEEEccC-ChhhHHHHHHHHHHH
Q 012647          420 MTNK---WHVYMTKDG----RISLAGL-SLAKCEYLADAIIDS  454 (459)
Q Consensus       420 ll~~---~gI~v~~gg----Ris~~~~-~~e~i~~~~~~l~~~  454 (459)
                      ++++   .++.+.+.|    |||++.. |+|||++++++|+++
T Consensus       298 l~~~~~~~~~~~~~~~~~~vR~s~~~~~t~edid~~l~~l~~l  340 (340)
T d1svva_         298 LNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRL  340 (340)
T ss_dssp             HTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred             HHHhhhhhcccccCCCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            8776   344455655    9976533 899999999999863

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.84  E-value=9.6e-20  Score=173.47  Aligned_cols=329  Identities=15%  Similarity=-0.007  Sum_probs=205.1

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (459)
                      +..+||+.-++    + + .+|+|++|+.+..... ...|++.....++|+.+|+++..       +..+++  |+|||+
T Consensus         2 ~~~~~f~s~n~----~-g-~~P~v~~A~~~a~~~~-~~~~~~~~~~~~l~~~la~~~g~-------~~~v~f--~~sGt~   65 (345)
T d1v72a1           2 PPALGFSSDNI----A-G-ASPEVAQALVKHSSGQ-AGPYGTDELTAQVKRKFCEIFER-------DVEVFL--VPTGTA   65 (345)
T ss_dssp             CCCCBCSCGGG----C-C-CCHHHHHHHHHTTSSC-CCSTTCSHHHHHHHHHHHHHHTS-------CCEEEE--ESCHHH
T ss_pred             CCCcCcCCCCC----C-C-CCHHHHHHHHHHhccC-ccccCCCHHHHHHHHHHHHHHCC-------CcEEEE--CCchHH
Confidence            45567775444    2 2 3889999999876443 36788888899999999999743       456888  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCC----CCcEEEEe
Q 012647          163 SLRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP----GGSFILLH  235 (459)
Q Consensus       163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~----~~~~~ii~  235 (459)
                      |+..+  +...+.+++.+++....+..+..   .....+..+..++.  ..++..+++.+++.+.+..    .....++.
T Consensus        66 An~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  141 (345)
T d1v72a1          66 ANALC--LSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVD--GPAAKLDIVRLRERTREKVGDVHTTQPACVS  141 (345)
T ss_dssp             HHHHH--HHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECC--CGGGCCCHHHHHHHTTSSTTCTTSCEEEEEE
T ss_pred             HHHHH--HHHHHhcCCccccccccceeeechhhHHHhcCcccccccc--cccccccHHHhhhhhcccccccccccceeee
Confidence            99998  44345678887777766543332   22344555555544  4566789999999987621    12334556


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcce
Q 012647          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA  315 (459)
Q Consensus       236 ~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~  315 (459)
                      ++++|++|...+.++++++.++|++||+++++|+++........   ..................+..|..+..   .|.
T Consensus       142 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  215 (345)
T d1v72a1         142 ITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSL---GCSPAEMTWKAGVDALSFGATKNGVLA---AEA  215 (345)
T ss_dssp             EESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHH---TCCTTTTTGGGTCCEEEECCGGGTCSS---CEE
T ss_pred             eeccccccccccchhhhhHHHHHHhcCceeeecccccceecccc---ccCHHHhhccccccccccCcccccccc---ccc
Confidence            77899999999999999999999999999999999754332100   000000001111233333444433211   233


Q ss_pred             EEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 012647          316 MNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGK  395 (459)
Q Consensus       316 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  395 (459)
                      ..  ................  ..........+..++...+.+..        ..+...+..++.+.+.+.+. +++.  
T Consensus       216 ~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~aa~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~-~~~g--  280 (345)
T d1v72a1         216 IV--LFNTSLATEMSYRRKR--AGHLSSKMRFLSAQIDAYLTDDL--------WLRNARKANAAAQRLAQGLE-GLGG--  280 (345)
T ss_dssp             EE--ESSGGGHHHHHHHHHH--TTCCCSSTHHHHHHHHHHTSTTH--------HHHHHHHHHHHHHHHHHHHT-TCTT--
T ss_pred             cc--cchhhhhhhccccccc--cccccchhhHHhhhhHHHHHHhh--------hhhhccchhhHHHHHHHHHH-hcCC--
Confidence            32  2233322222211111  11121222222223333344332        23445555667777778888 7642  


Q ss_pred             CcccccCCcceeeecCCCHHHHHHHHhcccEEEcCC--C----cEEEccC-ChhhHHHHHHHHHHH
Q 012647          396 DWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKD--G----RISLAGL-SLAKCEYLADAIIDS  454 (459)
Q Consensus       396 ~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~g--g----Ris~~~~-~~e~i~~~~~~l~~~  454 (459)
                       +.+..|..++++|+.+..+.+++|+++ ||.+.++  |    ||+++.. |+|+|++++++|+++
T Consensus       281 -~~~~~p~~~niv~~~~~~~~~~~L~~~-gi~v~~~~~~~~~lR~~~~~~~T~edid~~le~lr~a  344 (345)
T d1v72a1         281 -VEVLGGTEANILFCRLDSAMIDALLKA-GFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLA  344 (345)
T ss_dssp             -EEEESCCCSSEEEEEECHHHHHHHHHT-TCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred             -cEeccCCCccEEEEEcCHHHHHHHHHc-CCCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence             566667667788888888889998885 8877543  2    8887644 899999999999864

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.7e-20  Score=179.02  Aligned_cols=317  Identities=10%  Similarity=0.097  Sum_probs=204.2

Q ss_pred             CccCcHHHHHHHHHHhhcCCCCCCCC--CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCC
Q 012647           99 QPYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP  176 (459)
Q Consensus        99 ~~~~~~~v~~a~~~~~~~~~~~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~  176 (459)
                      +..+++.|+++|....-    .+.++  ..-+.+.|+.++++++...     +..|++  +.|||++++.+  +...+.+
T Consensus        27 P~~~~~~Vl~am~~~~i----~HRs~~f~~i~~ea~~~l~~llg~~~-----~~~ii~--~gsgT~a~~~~--i~~l~~~   93 (388)
T d1h0ca_          27 PSNLPPRIMAAGGLQMI----GSMSKDMYQIMDEIKEGIQYVFQTRN-----PLTLVI--SGSGHCALEAA--LVNVLEP   93 (388)
T ss_dssp             CCCCCHHHHHHHTCCCC----CTTSHHHHHHHHHHHHHHHHHHTCCC-----SEEEEE--SSCHHHHHHHH--HHHHCCS
T ss_pred             CCCCCHHHHHHhCcCCC----CCCCHHHHHHHHHHHHHHHHHhCCCC-----CcEEEE--cCcHHHHHHHH--HHHhhcc
Confidence            34568999988754221    11111  2346788888988876532     234777  89999999998  5556789


Q ss_pred             CCEEEEcCCCCcchH--HHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHH
Q 012647          177 GAKVLISSPTWGNHK--NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKI  254 (459)
Q Consensus       177 gd~Vlv~~p~y~~~~--~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i  254 (459)
                      |+++++....+....  ......+..+..++.  +....+|.+.+++.+..  .+++++.++..+|.||.+   .++++|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~n~tG~i---~pi~~i  166 (388)
T d1h0ca_          94 GDSFLVGANGIWGQRAVDIGERIGARVHPMTK--DPGGHYTLQEVEEGLAQ--HKPVLLFLTHGESSTGVL---QPLDGF  166 (388)
T ss_dssp             SCCEEECBSSHHHHHHHHHHHHHC--CBCCBC--CTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEE---CCCTTH
T ss_pred             CCceeeecccceeeeecccccccccccccccc--CCccccchHHHHHHhcc--CCcceEEEeeeeeccccc---cCHHHH
Confidence            999999998876543  334456777777766  45667899998887765  256677788999999999   778889


Q ss_pred             HHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHH--
Q 012647          255 ADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQ--  332 (459)
Q Consensus       255 ~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~--  332 (459)
                      +++|++||+++++|.+ +.++....+.         +..+.++++.|..|.++.|+ .+|++++   ++...+.+...  
T Consensus       167 ~~~~~~~g~~~~vD~~-qs~g~~~~d~---------~~~~~D~~~~s~~K~~~gp~-g~~~~~~---~~~~~~~~~~~~~  232 (388)
T d1h0ca_         167 GELCHRYKCLLLVDSV-ASLGGTPLYM---------DRQGIDILYSGSQKALNAPP-GTSLISF---SDKAKKKMYSRKT  232 (388)
T ss_dssp             HHHHHTTTCEEEEECT-TTTTTSCCCT---------TTTTCSEEEEESSSTTCCCT-TCEEEEE---CHHHHHHHTTCSS
T ss_pred             HHHhhcccccceeccc-cccccccccc---------cccccceecccccccccCCC-ceEEEee---cHHHHHhhhhccc
Confidence            9999999999999999 6665433322         23345677888888875443 2677655   65544332210  


Q ss_pred             ------------HH-----hhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 012647          333 ------------LK-----RLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGK  395 (459)
Q Consensus       333 ------------~~-----~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  395 (459)
                                  ..     ...+.....++..+..+....+.   +..  ...++.+.++.+++.+++++.+. ..|.  
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~---~~~--~~g~~~~~~~~~~l~~~l~~~~~-~~g~--  304 (388)
T d1h0ca_         233 KPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLA---LIA--EQGLENSWRQHREAAAYLHGRLQ-ALGL--  304 (388)
T ss_dssp             CCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHH---HHH--HHCHHHHHHHHHHHHHHHHHHHH-HHTC--
T ss_pred             cccccccccchhhhhhhhccccccccccccHHHHHHHHHHHH---HHH--HhccccccccccchhHHHHHHHh-hcCc--
Confidence                        00     00011111233333222222221   110  12357778888889999999998 8763  


Q ss_pred             CcccccCC-----cce--eee-cCCCH-HHHHHHHhcccEEEcCCC--------cEE-EccC-ChhhHHHHHHHHHHHHh
Q 012647          396 DWSFILRQ-----IGM--FSF-TGLNK-AQSDNMTNKWHVYMTKDG--------RIS-LAGL-SLAKCEYLADAIIDSYH  456 (459)
Q Consensus       396 ~~~~~~~~-----~g~--f~~-~~l~~-~~~~~ll~~~gI~v~~gg--------Ris-~~~~-~~e~i~~~~~~l~~~~~  456 (459)
                        ....++     .++  |.+ -+++. ++...|++++||.+..|.        ||| ++.. +.|+|++++++|+++++
T Consensus       305 --~~~~~~~~~rs~~i~~~~~p~~~~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~  382 (388)
T d1h0ca_         305 --QLFVKDPALRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQ  382 (388)
T ss_dssp             --CBSSCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred             --ccccCCHHHcCCeEEEEECCCCCCHHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence              222111     122  222 24555 556788888899988762        999 6533 78999999999999999


Q ss_pred             hcC
Q 012647          457 NVS  459 (459)
Q Consensus       457 ~~~  459 (459)
                      ++.
T Consensus       383 ~l~  385 (388)
T d1h0ca_         383 HCP  385 (388)
T ss_dssp             HSC
T ss_pred             Hhc
Confidence            863

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.82  E-value=1.5e-19  Score=177.45  Aligned_cols=327  Identities=10%  Similarity=0.028  Sum_probs=192.4

Q ss_pred             cCCCCCCccCcHHHHHHHHHHhhcCCCC-CCC------CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHH
Q 012647           93 YRTEELQPYVLDVVKKAENLMLERGENK-EYL------PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR  165 (459)
Q Consensus        93 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~-~Y~------~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~  165 (459)
                      |+|..+..++|..|.+++.+.+.+.... ...      -..-.+++|+.+|++++..      +++|++  |.++|++++
T Consensus        30 YLd~as~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~------~~ei~~--~~~~T~~~~  101 (404)
T d1qz9a_          30 YLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGAR------DGEVVV--TDTTSINLF  101 (404)
T ss_dssp             ECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCC------TTSEEE--CSCHHHHHH
T ss_pred             EcCCcccccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCC------CCcEEE--ecCchHHHH
Confidence            4444455566899999999987542111 010      0123457899999998765      789999  999999998


Q ss_pred             HHHHHH----HHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012647          166 LAAALI----ERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (459)
Q Consensus       166 l~~~~~----~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP  241 (459)
                      .+....    ....+|+.|++.+-.+..........+.++..++.+  .....+++.+++++++   +|++++++..+|.
T Consensus       102 ~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~---~T~lV~i~~v~~~  176 (404)
T d1qz9a_         102 KVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYT--LRLVDSPEELPQAIDQ---DTAVVMLTHVNYK  176 (404)
T ss_dssp             HHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCE--EEEESSGGGHHHHCST---TEEEEEEESBCTT
T ss_pred             HHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeecee--ccccccchhHHHhcCC---CceEEEEeccccc
Confidence            763211    123588988888877765544444444444444432  1234678899999886   8999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012647          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (459)
Q Consensus       242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~  321 (459)
                      ||.+   .++++|+++|+++|+++++|.+ +.++..+.+         +...+.++++.|.+|.+..+.-..|+++.   
T Consensus       177 tG~~---~pv~~i~~~~~~~~~~~~vD~~-q~~g~~~~~---------~~~~~~d~~~~s~~K~~~~~~g~~g~~~~---  240 (404)
T d1qz9a_         177 TGYM---HDMQALTALSHECGALAIWDLA-HSAGAVPVD---------LHQAGADYAIGCTYKYLNGGPGSQAFVWV---  240 (404)
T ss_dssp             TCBB---CCHHHHHHHHHHHTCEEEEECT-TTTTTSCCC---------HHHHTCSEEEECSSSTTCCCTTCCCEEEE---
T ss_pred             ccce---ecHHHHhccccccccceeEEee-ccccccccc---------cccccceEEEEechhhcccCCceEEEEEe---
Confidence            9999   5677899999999999999999 666543321         12224567788888887533333677654   


Q ss_pred             ChhHHHHHHHHHHhh-------------------ccccccCCchHHHH---HHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012647          322 SSDLAARVKSQLKRL-------------------ARPMYSNPPVHGAR---IVANVVGNPALFDEWKAEMEMMAGRIKNV  379 (459)
Q Consensus       322 ~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~---~~~~~L~~~~~~~~~~~~~~~~~~~~~~~  379 (459)
                      ++...+.+.......                   .......++..+..   .+...+.+...     ..+++........
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~  315 (404)
T d1qz9a_         241 SPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDM-----ASLRRKSLALTDL  315 (404)
T ss_dssp             CTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCH-----HHHHHHHHHHHHH
T ss_pred             chhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhH-----HHHHHHHHHhHHH
Confidence            444211111000000                   00001112222211   12223332221     1122222233333


Q ss_pred             HHHHHHHHhhccCCCCCcccccC-----CcceeeecCCCHHHHHHHHhcccEEEc--CCC--cEEEcc-C-ChhhHHHHH
Q 012647          380 RQKLFDSLSAKDKSGKDWSFILR-----QIGMFSFTGLNKAQSDNMTNKWHVYMT--KDG--RISLAG-L-SLAKCEYLA  448 (459)
Q Consensus       380 ~~~l~~~L~~~~g~~~~~~~~~~-----~~g~f~~~~l~~~~~~~ll~~~gI~v~--~gg--Ris~~~-~-~~e~i~~~~  448 (459)
                      ...+.+.+....|    ++++.|     .++...|...+.+.+...|.++||.+.  .+|  |||+++ + |++||++++
T Consensus       316 ~~~l~~~~~~~~~----~~i~~p~~~~~r~~~vsf~~~~~~~v~~~L~~~gi~~~~r~~~~lRiS~~h~ynt~~did~~~  391 (404)
T d1qz9a_         316 FIELVEQRCAAHE----LTLVTPREHAKRGSHVSFEHPEGYAVIQALIDRGVIGDYREPRIMRFGFTPLYTTFTEVWDAV  391 (404)
T ss_dssp             HHHHHHHHHTTSC----CEECSCSSGGGBCSEEEEECTTHHHHHHHHHTTTEECEEETTTEEEEECCTTTCCHHHHHHHH
T ss_pred             HHHHHHhhccCCC----EEEECCCCccceeeEEEEecCCHHHHHHHHHHCCCEEeecCCCeEEEECCCCCCCHHHHHHHH
Confidence            3333333330222    454433     245555544445444444456799763  234  999964 3 789999999


Q ss_pred             HHHHHHHhh
Q 012647          449 DAIIDSYHN  457 (459)
Q Consensus       449 ~~l~~~~~~  457 (459)
                      ++|++++++
T Consensus       392 ~~L~~vl~~  400 (404)
T d1qz9a_         392 QILGEILDR  400 (404)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999986

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.80  E-value=1.8e-17  Score=164.23  Aligned_cols=305  Identities=13%  Similarity=0.068  Sum_probs=193.7

Q ss_pred             CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCC
Q 012647          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARV  199 (459)
Q Consensus       120 ~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~  199 (459)
                      ..|.....+.+|.+.+++++..        +..++  +++|+.|+.++  +...+.+||+|+.... |......+...|+
T Consensus        69 d~Y~~dpt~~~lE~~~a~l~G~--------e~al~--~~SGt~An~~a--~~~l~~~Gd~Vi~~~~-f~~~~~~i~~~g~  135 (456)
T d1c7ga_          69 EAYAGSENFYHLEKTVKELFGF--------KHIVP--THQGRGAENLL--SQLAIKPGQYVAGNMY-FTTTRFHQEKNGA  135 (456)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHCC--------SEEEE--ESSHHHHHHHH--HHHHCCTTEEEEESSC-CHHHHHHHHHTTE
T ss_pred             hhccCCchHHHHHHHHHHHhCC--------CeEEE--CCCHHHHHHHH--HHHhcCCCCeEecCcc-hHHHHHHHHHcCc
Confidence            5688888899999999999743        56777  89999999998  4445789999887654 4445555667787


Q ss_pred             Ceeeeeee--------cCCCCCCCHHHHHHHHHcCC-CCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCCeeEEec
Q 012647          200 PWSEYRYY--------DPKTVGLDFEGMIADIKAAP-GGSFILLHGCAHNPT-GIDPTPEQWEKIADVIQEKNHIPFFDV  269 (459)
Q Consensus       200 ~v~~v~~~--------~~~~~~~d~e~l~~~i~~~~-~~~~~ii~~~p~NPT-G~~~s~~~l~~i~~l~~~~~~~ii~De  269 (459)
                      .++.+...        ....+.+|++.+++.|++.. ....++++.+++|+. |.+++.+++++|.++|++||+.+++|+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~  215 (456)
T d1c7ga_         136 TFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDA  215 (456)
T ss_dssp             EEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred             eeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEc
Confidence            77655432        12346789999999998743 345677788999997 588899999999999999999999999


Q ss_pred             cCCC----------CCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccc
Q 012647          270 AYQG----------FASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARP  339 (459)
Q Consensus       270 ay~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~  339 (459)
                      +...          ..+.+  .+...+...... .-.++..|++|.++.++   |.++ .+.++++.++++.........
T Consensus       216 a~~~~~a~~~~~~~~~~~~--~~i~~i~~~~~~-~ad~~s~s~~K~~~~~~---GG~i-~~~~~~l~~~~r~~~~~~~g~  288 (456)
T d1c7ga_         216 TRCVENAYFIKEQEAGYEN--VSIKDIVHEMFS-YADGCTMSGKKDCLVNI---GGFL-CMNDEEMFSAAKELVVVYEGM  288 (456)
T ss_dssp             TTHHHHHHHHHHHSTTCTT--SCHHHHHHHHHT-TCSEEEEETTTTTCCSS---CEEE-EESCHHHHHHHHHHHHHHTCC
T ss_pred             chhhcchhhhcccccccCC--CChhhhcccccc-ccccEEEeccccccccc---eeEE-EcCCHHHHHHHHHhccccCCC
Confidence            9431          11111  112222111111 23466679999998553   4443 356777665555433222111


Q ss_pred             c-ccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecC-------
Q 012647          340 M-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTG-------  411 (459)
Q Consensus       340 ~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~-------  411 (459)
                      . ..........+++..+... ..       ....++-.++.++|.+.|. +.|    +.++.+.++..++++       
T Consensus       289 ~~~g~~~~~~~~a~a~~l~e~-~~-------~~~l~~r~~~~~~L~e~L~-~~g----~~vv~p~g~~~v~vda~~~~~~  355 (456)
T d1c7ga_         289 PSYGGLAGRDMEAMAIGLREA-MQ-------YEYIEHRVKQVRYLGDKLR-EAG----VPIVEPTGGHAVFLDARRFCPH  355 (456)
T ss_dssp             TTTTTCCHHHHHHHHHHHHHH-TC-------HHHHHHHHHHHHHHHHHHH-HTT----CCBCSSCCSSEEEEEHHHHCTT
T ss_pred             cccchhhHHHHHHHHHHHHHh-cC-------HHHHHHHHHHHHHHHHHHH-hcc----CCcccCCCCcceeEechhhccC
Confidence            1 2223332222222212110 00       1122233445578888898 887    356667776655431       


Q ss_pred             C------CHHHHHHHHhcccEEEcCC-----------C----------cEEEc--cCChhhHHHHHHHHHHHHhh
Q 012647          412 L------NKAQSDNMTNKWHVYMTKD-----------G----------RISLA--GLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       412 l------~~~~~~~ll~~~gI~v~~g-----------g----------Ris~~--~~~~e~i~~~~~~l~~~~~~  457 (459)
                      +      ..+++..++.+.||...+.           |          |+++.  .+|+++||+++++|+++.++
T Consensus       356 i~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~  430 (456)
T d1c7ga_         356 LTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQH  430 (456)
T ss_dssp             SCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTT
T ss_pred             CCcccccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHhh
Confidence            1      1244556666679865432           1          88875  24899999999999999864

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.80  E-value=8.8e-18  Score=167.84  Aligned_cols=311  Identities=12%  Similarity=0.070  Sum_probs=188.2

Q ss_pred             CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHh-----CCCCEEEEcCCCCcchHHHh
Q 012647          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY-----FPGAKVLISSPTWGNHKNIF  194 (459)
Q Consensus       120 ~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~-----~~gd~Vlv~~p~y~~~~~~~  194 (459)
                      ..|....++.+|++.+++++.        .+++++  +++|++|++++.+++...     ..+..++...+.|..+....
T Consensus        69 ~~y~~~~~~~~le~~~a~l~g--------~~~~~~--~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~  138 (465)
T d1ax4a_          69 EAYAGSRNYYDLKDKAKELFN--------YDYIIP--AHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHV  138 (465)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHC--------CCEEEE--ESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHH
T ss_pred             hhhccChHHHHHHHHHHHHHC--------CCEEEE--CCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhHHHH
Confidence            568888899999999999963        367888  999999999996665321     13344566666666677777


Q ss_pred             hhCCCCeeeeeee--------cCCCCCCCHHHHHHHHHcCCC-CcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCCe
Q 012647          195 NDARVPWSEYRYY--------DPKTVGLDFEGMIADIKAAPG-GSFILLHGCAHNPTG-IDPTPEQWEKIADVIQEKNHI  264 (459)
Q Consensus       195 ~~~G~~v~~v~~~--------~~~~~~~d~e~l~~~i~~~~~-~~~~ii~~~p~NPTG-~~~s~~~l~~i~~l~~~~~~~  264 (459)
                      ...|+.++.++..        .+..+.+|++.++++|++..+ ...++++..+||..| .+++.+++++|.++|++||++
T Consensus       139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~  218 (465)
T d1ax4a_         139 ELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIF  218 (465)
T ss_dssp             HHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCC
T ss_pred             HHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCE
Confidence            7888877655321        234567899999999986433 345566666666664 568999999999999999999


Q ss_pred             eEEeccCCCCCC--------CCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhh
Q 012647          265 PFFDVAYQGFAS--------GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRL  336 (459)
Q Consensus       265 ii~Deay~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~  336 (459)
                      +|+|+++.....        +........+....... ..++..|.+|.+  .|++.|+++. .................
T Consensus       219 l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~d~~s~s~~k~~--~~~~~g~l~~-~~~~~~~~~~~~~~~~~  294 (465)
T d1ax4a_         219 VVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKY-ADALTMSAKKDP--LLNIGGLVAI-RDNEEIFTLARQRCVPM  294 (465)
T ss_dssp             EEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGG-CSEEEEETTSTT--CCSSCEEEEE-SSCHHHHHHHHHHHHHH
T ss_pred             EEEECcchhhhhcccccccccccccchhhhccccccc-cceeEeecccCc--ccccceeEee-cchHHHHHhhhcccccc
Confidence            999999642110        00001122222111111 235555666665  4566788744 22222222222222111


Q ss_pred             cc-ccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC---
Q 012647          337 AR-PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---  412 (459)
Q Consensus       337 ~~-~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l---  412 (459)
                      .. ..+.+....+..++...+.. ..       .+...++..++.++|.+.|+ +.+    ++++.+.++++++.+.   
T Consensus       295 ~~~~~~~~~~~~~~~a~~~~~~e-~~-------~~~~~~~~~~~~~~l~~~L~-~~g----~~~v~~~~~~~~~~~~~~~  361 (465)
T d1ax4a_         295 EGFVTYGGLAGRDMAAMVQGLEE-GT-------EEEYLHYRIGQVKYLGDRLR-EAG----IPIQYPTGGHAVFVDCKKL  361 (465)
T ss_dssp             TCSTTTTTCCHHHHHHHHHHHHH-TT-------CHHHHHHHHHHHHHHHHHHH-HTT----CCBCSSCCSSEEEEESTTT
T ss_pred             ccCCCcchhhHHHHHHHhhhhHH-hh-------hHHHHHHHHHHHHHHHHHHH-hhc----CccccCCCcceeeeehhhh
Confidence            11 11222333332222222111 00       12334445556788999999 877    4566666665554321   


Q ss_pred             ----------CHHHHHHHHhcccEEEcCC-------------------C--cEEEc--cCChhhHHHHHHHHHHHHhh
Q 012647          413 ----------NKAQSDNMTNKWHVYMTKD-------------------G--RISLA--GLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       413 ----------~~~~~~~ll~~~gI~v~~g-------------------g--Ris~~--~~~~e~i~~~~~~l~~~~~~  457 (459)
                                .......++.+.||...+.                   +  |+++.  .+|+|++++++++|.+++++
T Consensus       362 ~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~  439 (465)
T d1ax4a_         362 VPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEK  439 (465)
T ss_dssp             CTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHH
T ss_pred             cCCCccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHH
Confidence                      1244566677779875431                   1  77754  23899999999999998764

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.80  E-value=3.2e-18  Score=165.20  Aligned_cols=315  Identities=13%  Similarity=0.016  Sum_probs=188.3

Q ss_pred             CCccCcHHHHHHHHHHhhcCCCCCCC--CCcccHHHHHHHHHHHhcCCCCccccCc--eEEeecccchhHHHHHHHHHHH
Q 012647           98 LQPYVLDVVKKAENLMLERGENKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQR--VATVQGLSGTGSLRLAAALIER  173 (459)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~--~~~g~~~lr~aia~~l~~~~~~~~~~~~--i~~~~t~ggt~a~~l~~~~~~~  173 (459)
                      ++.++++.|+++|.+..    .++++  ...-+++.|+.++++++..      +++  +++  |.|||++++++  +...
T Consensus         7 GP~~~~~~V~~A~~~~~----~~~~~~~~~~~~~~~r~~l~~l~~~~------~~~~~i~~--t~s~T~~~~~~--~~~l   72 (361)
T d1m32a_           7 GPLTTSRTVKEAMLFDS----CTWDDDYNIGVVEQIRQQLTALATAS------EGYTSVLL--QGSGSYAVEAV--LGSA   72 (361)
T ss_dssp             SSCCCCHHHHHTTCCCC----CTTSHHHHTTTHHHHHHHHHHHHCSS------SSEEEEEE--ESCHHHHHHHH--HHHS
T ss_pred             CCCCCCHHHHHHhhhhc----cCCCcHHHHHHHHHHHHHHHHHhCCC------CCCEEEEE--CCCHHHHHHHH--HHHh
Confidence            33446888888764322    12222  2345689999999998664      444  445  88899999998  4445


Q ss_pred             hCCCCEEEEcCCCCcc--hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHH
Q 012647          174 YFPGAKVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQW  251 (459)
Q Consensus       174 ~~~gd~Vlv~~p~y~~--~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l  251 (459)
                      ..+++.+++....+..  .....+..+.+...+..........+.+.......   ++++++.++..+|-||..   .++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~tG~~---~~i  146 (361)
T d1m32a_          73 LGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNAD---PTISHIAMVHSETTTGML---NPI  146 (361)
T ss_dssp             CCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHC---TTCCEEEEESEETTTTEE---CCH
T ss_pred             hhhccccceeeehhhhhhHHHHhhhhhcccccccccccCCccchhhHHHHHhc---cCccceEEEeeecccccc---hhh
Confidence            6677877777766533  23334455666655554322222222333333333   377888889999999999   667


Q ss_pred             HHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc-ccCCCCcceEEEEeCChhHHHH--
Q 012647          252 EKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAAR--  328 (459)
Q Consensus       252 ~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~--  328 (459)
                      ++|+++|++||+++++|.+ +.++..+.+.         +..+.++++.|..|.+ |++|  +|++++   .++..+.  
T Consensus       147 ~~i~~~~~~~g~~~~vDa~-qs~G~~~~d~---------~~~~~D~~~~s~~K~l~gp~G--~g~l~~---~~~~~~~~~  211 (361)
T d1m32a_         147 DEVGALAHRYGKTYIVDAM-SSFGGIPMDI---------AALHIDYLISSANKCIQGVPG--FAFVIA---REQKLAACK  211 (361)
T ss_dssp             HHHHHHHHHHTCEEEEECT-TTTTTSCCCT---------TTTTCSEEEEESSSTTCCCSS--EEEEEE---EHHHHTTCT
T ss_pred             hhhhhhhcccceeeEeecc-cccCcccccc---------cccccceEEeeecccccCCCC--ceEEEe---chhhhhhhc
Confidence            7899999999999999999 5555433322         3345678889999987 5567  788766   4432111  


Q ss_pred             ------------HHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 012647          329 ------------VKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKD  396 (459)
Q Consensus       329 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~  396 (459)
                                  ..............+++.....+....+..  +..  ....+...++.+...+.+.+.++ ..|.   
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~--~~~--~~~~~~~~~~~~~~~~~l~~~~~-~~g~---  283 (361)
T d1m32a_         212 GHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKE--LAK--EGGVAARHQRYQQNQRSLVAGMR-ALGF---  283 (361)
T ss_dssp             TCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH--HHH--HTHHHHHHHHHHHHHHHHHHHHH-HTTC---
T ss_pred             cccccccccchhhhccccccccccCCCCCchhhhHHHHHHHH--HHH--hcchhhhHHHHHHHHHHHHHHHh-hcCC---
Confidence                        111111111222234444444333333221  000  11234556677777888888888 7763   


Q ss_pred             cccccCC----cceeee-c----CCCHHHHHHHHhcccEEEcCCC-------cEEEc-cCChhhHHHHHHHHHHHHh
Q 012647          397 WSFILRQ----IGMFSF-T----GLNKAQSDNMTNKWHVYMTKDG-------RISLA-GLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       397 ~~~~~~~----~g~f~~-~----~l~~~~~~~ll~~~gI~v~~gg-------Ris~~-~~~~e~i~~~~~~l~~~~~  456 (459)
                       ....+.    .+...+ .    +.+...+...+.++||.+.+|+       |||.. ..+++||++++++|++++.
T Consensus       284 -~~~~~~~~rs~~v~~~~~p~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~Ris~~g~~~~~di~~lv~al~~~L~  359 (361)
T d1m32a_         284 -NTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMY  359 (361)
T ss_dssp             -CBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCT
T ss_pred             -cccCChhhcCCcEEEEECCCCCCCCHHHHHHHHHHCCcEEECCCcCCCCEEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence             222111    122222 1    2344444444455699987763       99853 4489999999999999875

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=2.6e-18  Score=167.29  Aligned_cols=323  Identities=12%  Similarity=0.019  Sum_probs=195.7

Q ss_pred             CCccCcHHHHHHHHHHhhcCCCCCCCCC--cccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHh-
Q 012647           98 LQPYVLDVVKKAENLMLERGENKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY-  174 (459)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~~--~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~-  174 (459)
                      |+.++++.|+++|....    ..++.+.  .-+.+.++.+.+.+....  ..+++.|++  |.|||++++++  +...+ 
T Consensus        10 GP~~v~~~V~~Am~~~~----~~hr~~~f~~~~~~~~~~~r~~~~~~~--~~~~~~i~~--t~sgT~a~~~~--~~~l~~   79 (382)
T d2bkwa1          10 GPIILSGAVQKALDVPS----LGHTSPEFVSIFQRVLKNTRAVFKSAA--ASKSQPFVL--AGSGTLGWDIF--ASNFIL   79 (382)
T ss_dssp             SSCCCCHHHHHTTSCCC----CCTTSHHHHHHHHHHHHHHHHHTTCCG--GGTCEEEEE--ESCTTHHHHHH--HHHHSC
T ss_pred             CCCCCCHHHHHHhCccc----CCCCcHHHHHHHHHHHHHHHHHHhhhc--CCCCeEEEE--eCcHHHHHHHH--HHHHHH
Confidence            44556889988764321    1223221  123344555555543211  123567888  99999999998  33333 


Q ss_pred             --CCCCEEEEcCCCCcch--HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHH
Q 012647          175 --FPGAKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQ  250 (459)
Q Consensus       175 --~~gd~Vlv~~p~y~~~--~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~  250 (459)
                        .+||+|++..-.+...  ...++..|..+..+... +.+...+.+.+++.+..  +++++++++..+|.||+..+.+ 
T Consensus        80 ~~~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~tg~~~~~~-  155 (382)
T d2bkwa1          80 SKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPL-KIGESVPLELITEKLSQ--NSYGAVTVTHVDTSTAVLSDLK-  155 (382)
T ss_dssp             TTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCS-STTSCCCHHHHHHHHHH--SCCSEEEEESEETTTTEECCHH-
T ss_pred             hcCCCCceEEEEechhhhhhhhhcccccccccccccc-CCCCccchhHHHHHhhh--ccchheeeeeccccccccccch-
Confidence              4899999988776543  34456677777766542 44567888999888876  3566777788999999996555 


Q ss_pred             HHHHHHHHHh--cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc-ccCCCCcceEEEEeCChhHHH
Q 012647          251 WEKIADVIQE--KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAA  327 (459)
Q Consensus       251 l~~i~~l~~~--~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~  327 (459)
                        ++.+.|++  +++++++|.+ +.++..+.+.         +..+.++++.|-+|.+ |++|  +|++++   +++..+
T Consensus       156 --~~~~~~~~~~~~~~~~vDa~-qs~g~~pid~---------~~~giD~~~~s~~K~l~gP~G--~g~l~v---s~~~~~  218 (382)
T d2bkwa1         156 --AISQAIKQTSPETFFVVDAV-CSIGCEEFEF---------DEWGVDFALTASQKAIGAPAG--LSISLC---SSRFMD  218 (382)
T ss_dssp             --HHHHHHHHHCTTSEEEEECT-TTTTTSCCCT---------TTTTCSEEEEESSSTTCCCSC--EEEEEE---CHHHHH
T ss_pred             --hhhhhccccccceeeeeecc-cccccccccc---------cccCeeEEeecccccCcCCCc--hhhhhc---cHHHHh
Confidence              45555555  4699999999 7766543332         2334678889999988 7888  788877   777554


Q ss_pred             HHHHHHHh----------------------hccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          328 RVKSQLKR----------------------LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD  385 (459)
Q Consensus       328 ~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  385 (459)
                      .+......                      ..+.....++.....+....|+.   .  -.+.++...++++++++++++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~---~--~~~g~~~~~~~~~~l~~~l~~  293 (382)
T d2bkwa1         219 YALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKE---I--LEEGLHKRWDLHREMSDWFKD  293 (382)
T ss_dssp             HHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH---H--HHHCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHH---H--HHhhhhhhHHHHHHHHHHHHH
Confidence            43221111                      11122223444333333333321   1  023356777778888888888


Q ss_pred             HHhhcc-CCCCCcccccC---CcceeeecCCCHHHHHHHHhcccEEEcCCC---------cEE-EccC-ChhhHHHHHHH
Q 012647          386 SLSAKD-KSGKDWSFILR---QIGMFSFTGLNKAQSDNMTNKWHVYMTKDG---------RIS-LAGL-SLAKCEYLADA  450 (459)
Q Consensus       386 ~L~~~~-g~~~~~~~~~~---~~g~f~~~~l~~~~~~~ll~~~gI~v~~gg---------Ris-~~~~-~~e~i~~~~~~  450 (459)
                      .+. .. +... +.....   ..++..+...+.+.+..+++++||.+..|.         ||+ ++.. ++|++++++++
T Consensus       294 ~l~-~~~~~~~-~~~~~~~~~s~~v~~~~~~~~~~~~~~L~~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~  371 (382)
T d2bkwa1         294 SLV-NGLQLTS-VSRYPSNMSAHGLTAVYVADPPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNC  371 (382)
T ss_dssp             HHH-TTTCCEE-SSCSSSTTBCSSCEEEECSCHHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHH
T ss_pred             Hhh-hcccccc-cccCchhccCCcEEEEcCCCHHHHHHHHHHCCeEEECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHH
Confidence            887 43 2100 111111   112333333456666667778899998872         988 5433 46777777777


Q ss_pred             HHHHHhhc
Q 012647          451 IIDSYHNV  458 (459)
Q Consensus       451 l~~~~~~~  458 (459)
                      |..+...|
T Consensus       372 l~~i~~~L  379 (382)
T d2bkwa1         372 FDLIKLAL  379 (382)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            76665544

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.76  E-value=6.1e-17  Score=157.01  Aligned_cols=195  Identities=16%  Similarity=0.085  Sum_probs=141.9

Q ss_pred             ccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH-hCCCC
Q 012647          100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGA  178 (459)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~-~~~gd  178 (459)
                      |.+.++-++++.++++.+.   |.....+.+|++.+|++++.        ++.++  +++||.|+.++  +.+. +.+||
T Consensus         8 ~~~~~~~~~~~~~~~~~~~---~~~G~~v~~~E~~la~~~g~--------~~ai~--~~sgt~Al~~a--l~al~~~~gd   72 (376)
T d1mdoa_           8 PAMGAEELAAVKTVLDSGW---ITTGPKNQELEAAFCRLTGN--------QYAVA--VSSATAGMHIA--LMALGIGEGD   72 (376)
T ss_dssp             CCCCHHHHHHHHHHHHHTC---CSSSHHHHHHHHHHHHHHCC--------SEEEE--ESCHHHHHHHH--HHHTTCCTTC
T ss_pred             CCCCHHHHHHHHHHHhcCC---CcCCHHHHHHHHHHHHHHCc--------CeEEE--eCCHHHHHHHH--HHHhCCCCCC
Confidence            3456677788888887653   44445678999999999754        35666  78999999998  3333 56999


Q ss_pred             EEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 012647          179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVI  258 (459)
Q Consensus       179 ~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~  258 (459)
                      +|++++.+|......+..+|++++.++++ .+++.+|++.+++++++   ++++|++.   |..|..   .++++|.++|
T Consensus        73 eVi~~~~~~~~~~~ai~~~g~~pv~~d~~-~~~~~~d~~~l~~~i~~---~tkaIi~~---h~~G~~---~~~~~i~~i~  142 (376)
T d1mdoa_          73 EVITPSMTWVSTLNMIVLLGANPVMVDVD-RDTLMVTPEHIEAAITP---QTKAIIPV---HYAGAP---ADLDAIYALG  142 (376)
T ss_dssp             EEEEESSSCHHHHHHHHHTTCEEEEECBC-TTTCCBCHHHHHHHCCT---TEEEECCB---CGGGCC---CCHHHHHHHH
T ss_pred             EEEEecccccccccchhccccceeeeccc-ccccCCCHHHHHHhcCC---CCeEEEEe---CCCCCc---cchhHHHHHH
Confidence            99999999999999999999999999996 55788999999999986   78888753   467877   5788899999


Q ss_pred             HhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHH
Q 012647          259 QEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKS  331 (459)
Q Consensus       259 ~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~  331 (459)
                      ++||+++|+|+| +.++.. . .+.     .....+..++.++.+|.++ .|. -|.+  ++.++++.+++..
T Consensus       143 ~~~~i~vIeD~a-~a~g~~-~-~~~-----~~g~~g~~~~Sf~~~K~l~-~g~-GG~i--~t~~~~l~~~~~~  203 (376)
T d1mdoa_         143 ERYGIPVIEDAA-HATGTS-Y-KGR-----HIGARGTAIFSFHAIKNIT-CAE-GGIV--VTDNPQFADKLRS  203 (376)
T ss_dssp             HHHTCCBCEECT-TCTTCE-E-TTE-----ETTSSSEEEEECCTTSSSC-SSS-CEEE--EESCHHHHHHHHH
T ss_pred             HhcCceEEeccc-hhccCe-e-CCe-----ecccccCccccCCCcCCCC-CCC-CCEE--EEechhHHHHHHh
Confidence            999999999999 555421 0 000     0122233344444469887 443 3444  5777775554433

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.76  E-value=1.8e-16  Score=155.88  Aligned_cols=339  Identities=16%  Similarity=0.117  Sum_probs=195.1

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...+|+..|......|..  +|+|.+++++.++... +...+.    .....+++++.....   ..+.+.+  +.+|+
T Consensus        51 G~~ylD~~~~~~~~~lGh~--hp~i~~ai~~~~~~~~-~~~~~~----~~~~~la~~~~~~~~---~~~~v~f--~~sGs  118 (427)
T d2gsaa_          51 GNRYIDYVGTWGPAICGHA--HPEVIEALKVAMEKGT-SFGAPC----ALENVLAEMVNDAVP---SIEMVRF--VNSGT  118 (427)
T ss_dssp             SCEEEESSGGGTTTTTCBT--CHHHHHHHHHHHTTCS-CCSSCC----HHHHHHHHHHHHHST---TCSEEEE--ESSHH
T ss_pred             CCEEEEechhHHHHhccCC--cHHHHHHHHHHHHhcC-ccccch----hHHHHHHHHHHhhCC---ccccccc--cCCcH
Confidence            4678999887643333443  7999999999886632 222222    233334444332211   1367888  89999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhh--------CCCCe---eeeeeecC--CCCCCCHHHHHHHHHcCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND--------ARVPW---SEYRYYDP--KTVGLDFEGMIADIKAAPG  228 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~--------~G~~v---~~v~~~~~--~~~~~d~e~l~~~i~~~~~  228 (459)
                      +|++.+.++...+....+|+..+-+|.+.......        .+...   +..+...+  .....|++.+++.+++.+.
T Consensus       119 eA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~  198 (427)
T d2gsaa_         119 EACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPG  198 (427)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECTTCHHHHHHHHTTSTT
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCcchHHHHHHHHHhCCC
Confidence            99999988877766678899999888754322111        11100   00000000  0012489999999987655


Q ss_pred             CcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc
Q 012647          229 GSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (459)
Q Consensus       229 ~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (459)
                      +...+|+....--.|. .++++-+++|.++|++||+++|.||++.++..+    ..+.... .+..++++   .++|.+|
T Consensus       199 ~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g----~~~~~~~-~gi~PDi~---~~gK~lg  270 (427)
T d2gsaa_         199 EIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIA----YGGVQEK-FGVTPDLT---TLGKIIG  270 (427)
T ss_dssp             TEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTB----TTCHHHH-TTCCCSEE---EECGGGG
T ss_pred             CeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccceec----ccchHHh-cCCCHHHH---hhhhccC
Confidence            6666665544444564 467778999999999999999999998877533    2233322 34445655   5789998


Q ss_pred             cCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHH---HHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          308 LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVA---NVVGNPALFDEWKAEMEMMAGRIKNVRQKLF  384 (459)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~  384 (459)
                       .|+.+|.+++   .++..+.+...-.....+++ +.+.++..++.   .++.+.++.       ++..+.-+..++.|.
T Consensus       271 -gG~p~~a~~~---~~~i~~~~~~~~~~~~~~T~-~gnpla~AAala~Le~i~~~~l~-------~~~~~~g~~l~~~L~  338 (427)
T d2gsaa_         271 -GGLPVGAYGG---KREIMQLVAPAGPMYQAGTL-SGNPLAMTAGIKTLELLRQPGTY-------EYLDQITKRLSDGLL  338 (427)
T ss_dssp             -TTSCCEEEEE---CHHHHTTBTTTSSBCCCCTT-TTCHHHHHHHHHHHHHHTSTTHH-------HHHHHHHHHHHHHHH
T ss_pred             -CCcceeeeee---hHHHHHHhcccCCCcCCCCC-CCCchhhHHHHHhhHHhhhhhHH-------hhhhHHHHHHHHHHH
Confidence             7898998866   77743333221111112223 33444444443   334444331       222222222333333


Q ss_pred             HHHhhccCCCCCcccccCCcceee--ecC-----------CCH----HHHHHHHhcccEEEcCCC--c--EEEccCChhh
Q 012647          385 DSLSAKDKSGKDWSFILRQIGMFS--FTG-----------LNK----AQSDNMTNKWHVYMTKDG--R--ISLAGLSLAK  443 (459)
Q Consensus       385 ~~L~~~~g~~~~~~~~~~~~g~f~--~~~-----------l~~----~~~~~ll~~~gI~v~~gg--R--is~~~~~~e~  443 (459)
                      +..+ +.+.+  +. +...++++.  |..           .+.    .+...+++ +||++.|++  +  +++.. |+++
T Consensus       339 ~l~~-~~~~~--~~-v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~-~Gv~l~p~~~~~~~~~l~~-Te~d  412 (427)
T d2gsaa_         339 AIAQ-ETGHA--AC-GGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLE-QGIYLAPSQFEAGFTSLAH-TEED  412 (427)
T ss_dssp             HHHH-HTTCC--CE-EEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTTSCEECCTTC-CHHH
T ss_pred             HHHh-hcCCC--cE-EcccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHH-CCEEECCCCCcceeCCCCC-CHHH
Confidence            3333 44321  11 222344442  211           122    23345666 599999987  3  24333 8999


Q ss_pred             HHHHHHHHHHHHhhc
Q 012647          444 CEYLADAIIDSYHNV  458 (459)
Q Consensus       444 i~~~~~~l~~~~~~~  458 (459)
                      |++++++++++++++
T Consensus       413 Id~~l~al~~al~~L  427 (427)
T d2gsaa_         413 IDATLAAARTVMSAL  427 (427)
T ss_dssp             HHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999999999875

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.75  E-value=2.7e-17  Score=157.38  Aligned_cols=310  Identities=15%  Similarity=0.081  Sum_probs=191.3

Q ss_pred             CCccCcHHHHHHHHHHhhcCCCCCCCC--CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhC
Q 012647           98 LQPYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF  175 (459)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~  175 (459)
                      |+.++++.|+++|.+..    ..+.++  ..-+.+.++.+++++...      .+.+++  +.|||++++.+  +.+.+.
T Consensus         7 GP~~v~~~V~~am~~~~----~~hr~~~f~~i~~~~~~~l~~ll~~~------~~~i~~--~gsgT~a~e~~--~~nl~~   72 (348)
T d1iuga_           7 GPVRLHPKALEALARPQ----LHHRTEAAREVFLKARGLLREAFRTE------GEVLIL--TGSGTLAMEAL--VKNLFA   72 (348)
T ss_dssp             SSCCCCHHHHHHHHSCC----CCTTSHHHHHHHHHHHHHHHHHHTCS------SEEEEE--ESCHHHHHHHH--HHHHCC
T ss_pred             CCCCCCHHHHHHhcCCC----CCCCCHHHHHHHHHHHHHHHHHhCCC------CCEEEE--eCchHHHHHHH--HHhccc
Confidence            44557899999886532    122221  123456667777776532      345666  89999999998  666688


Q ss_pred             CCCEEEEcCCCCc--chHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHH
Q 012647          176 PGAKVLISSPTWG--NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEK  253 (459)
Q Consensus       176 ~gd~Vlv~~p~y~--~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~  253 (459)
                      +||+|++..-++.  .+...++.+|.++..+..  +.+..++++...    .  .+...+++++..+.||+.   .++++
T Consensus        73 ~g~~vlv~~~G~f~~~~~~~a~~~~~~~~~~~~--~~g~~~~~~~~~----~--~~~~~v~~~h~eTstG~~---~~i~~  141 (348)
T d1iuga_          73 PGERVLVPVYGKFSERFYEIALEAGLVVERLDY--PYGDTPRPEDVA----K--EGYAGLLLVHSETSTGAL---ADLPA  141 (348)
T ss_dssp             TTCEEEEEECSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCTTTSC----C--SSCSEEEEESEETTTTEE---CCHHH
T ss_pred             ccccceeecchHHHHHHHHHHHhcCcccccccc--cCCCcccccccc----c--cCCCeeEEEecchhhhhh---ccHHH
Confidence            9999999887754  345667788888888776  344455554432    2  244566667788889999   55666


Q ss_pred             HHHHHHhc--CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc-ccCCCCcceEEEEeCChhHHHHH-
Q 012647          254 IADVIQEK--NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARV-  329 (459)
Q Consensus       254 i~~l~~~~--~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~-  329 (459)
                      |.++|+++  +.++++|.+ +.++..+.+.+.+         +.++++.|-.|.+ |+||  +|++++   +++.++++ 
T Consensus       142 i~~~~~~~~~~~l~~vDav-ss~g~~~i~~d~~---------~iD~~~~~sqK~l~gppG--~~~v~~---s~~~le~~~  206 (348)
T d1iuga_         142 LARAFKEKNPEGLVGADMV-TSLLVGEVALEAM---------GVDAAASGSQKGLMCPPG--LGFVAL---SPRALERLK  206 (348)
T ss_dssp             HHHHHHHHCTTCEEEEECT-TTBTTBCCCSGGG---------TCSEEEEESSSTTCCCSC--EEEEEE---CHHHHHTCC
T ss_pred             HHHHHHhhhccceeechhh-hcccccccccccc---------cCCEEEeccccceecCCc--eeeeee---chHHHhhhc
Confidence            88888776  478889998 7666544433333         3567788889988 9898  788877   66654432 


Q ss_pred             --------HHHHHhhcc-ccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012647          330 --------KSQLKRLAR-PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI  400 (459)
Q Consensus       330 --------~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  400 (459)
                              ...+..... .+..+++.....+....|+.  ..+    ...+..++.+..++.+++.++ ..|+    ...
T Consensus       207 ~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~--~~~----~~~~~~~~~~~~~~~~~~~~~-~~gl----~~~  275 (348)
T d1iuga_         207 PRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEE--VLP----RLEEHLALKAWQNALLYGVGE-EGGL----RPV  275 (348)
T ss_dssp             CCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH--HGG----GHHHHHHHHHHHHHHHHHHHH-HTTC----EES
T ss_pred             ccccccchhhhhhhhccCcccccccchHHHHHHHHHHH--HHH----HHhHHHHHHHHHHHHHhhhhh-hhhh----ccC
Confidence                    111111111 12224444444444444421  111    122333333444555555555 6663    322


Q ss_pred             cCC--cce--eee-cCCCHHHHHHHHhcccEEEcCC-----C---cEEEc-cCChhhHHHHHHHHHHHHhhc
Q 012647          401 LRQ--IGM--FSF-TGLNKAQSDNMTNKWHVYMTKD-----G---RISLA-GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       401 ~~~--~g~--f~~-~~l~~~~~~~ll~~~gI~v~~g-----g---Ris~~-~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      +..  .+.  |.. -|++.+.+...++++||.+.+|     |   ||+.. ..+.+++++++++|+++++++
T Consensus       276 ~~~~s~~v~~~~~P~g~~~~~~~~~l~~~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~~  347 (348)
T d1iuga_         276 PKRFSPAVAAFYLPEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI  347 (348)
T ss_dssp             CSSBCTTCEEEECCTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCeEEEEECCCCCCHHHHHHHHHHCCeEEEcCccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            211  111  222 2567777666667789999887     2   88744 458999999999999999875

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=4.8e-17  Score=161.45  Aligned_cols=187  Identities=11%  Similarity=-0.027  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHH-HHHh-CCCCEEEEcCCCCcchHHHhhhCCCCeeeeee
Q 012647          129 AAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAAL-IERY-FPGAKVLISSPTWGNHKNIFNDARVPWSEYRY  206 (459)
Q Consensus       129 ~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~-~~~~-~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~  206 (459)
                      ..+...+.+++....|.+. .....+  |+|||++..++... .+.. .+++.|+++...+..+...+..+|++++.|+.
T Consensus        93 ~~le~~~~~~~~~l~g~~~-~~~~~~--~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~  169 (445)
T d3bc8a1          93 NKITNSLVLNVIKLAGVHS-VASCFV--VPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIEN  169 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCTT-CCEEEE--ESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECC
T ss_pred             HHHHHHHHHHHHHHhCCCc-ccCccc--cccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEe
Confidence            3455445544433333221 133444  78888766554222 1122 36789999999999999999999999888864


Q ss_pred             e-cCCCCCCCHHHHHHHHHcC-CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChh
Q 012647          207 Y-DPKTVGLDFEGMIADIKAA-PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDAS  284 (459)
Q Consensus       207 ~-~~~~~~~d~e~l~~~i~~~-~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~  284 (459)
                      . .++++.+|+++|++++++. .++++++++++|+|++|.+   +++++|+++|++||+++++|+||......    ...
T Consensus       170 ~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~---~~~~~i~~~~~~~~~~l~vD~a~~~~~~~----~~~  242 (445)
T d3bc8a1         170 VLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVP---DRLEELAVICANYDIPHVVNNAYGLQSSK----CMH  242 (445)
T ss_dssp             EEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCC---CCHHHHHHHHHHHTCCEEEECTTTTTCHH----HHH
T ss_pred             eccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeee---hhHHHHHHHHHHhCCcEEEEccchhhhhh----ccc
Confidence            2 2557899999999999762 2357888889999999999   88999999999999999999997654311    000


Q ss_pred             HHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHH
Q 012647          285 SVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR  328 (459)
Q Consensus       285 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~  328 (459)
                      ..........-.+++.|.+|.++.|. ..|++  ++++....+.
T Consensus       243 ~~~~~~~~~~vd~~~~s~hK~~~~p~-g~~~l--~~~~~~~~~~  283 (445)
T d3bc8a1         243 LIQQGARVGRIDAFVQSLDKNFMVPV-GGAII--AGFNEPFIQD  283 (445)
T ss_dssp             HHHHHHHHSCCCEEEEEHHHHHSCCS-SCEEE--EESCHHHHHH
T ss_pred             cchhccCcCCcceEEecCccccccCC-CCcee--eeCChHHHHH
Confidence            11111223345678889999876443 25555  4566664333

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.74  E-value=9.6e-17  Score=158.73  Aligned_cols=273  Identities=13%  Similarity=0.005  Sum_probs=165.8

Q ss_pred             cccch-hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeee-cCCCCCCCHHHHHHHHHcC--CCCcEE
Q 012647          157 GLSGT-GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAA--PGGSFI  232 (459)
Q Consensus       157 t~ggt-~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~-~~~~~~~d~e~l~~~i~~~--~~~~~~  232 (459)
                      +.+|+ .++.++....+...++++|+++.-.+..+...+...|++++.++.. +++++.+|+++|++++++.  ...+.+
T Consensus       135 ~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~  214 (434)
T d2z67a1         135 TPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPC  214 (434)
T ss_dssp             ESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEE
T ss_pred             cCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccCCCHHHHHHHHHhhhhcCCceE
Confidence            44444 4444442222223478999999999998888899999998888742 2456789999999999752  235677


Q ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCC
Q 012647          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAER  312 (459)
Q Consensus       233 ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R  312 (459)
                      ++..+|+|++|.+   +++++|+++|++||+++++|++|......     .............++++.|++|.++.+ ..
T Consensus       215 v~~~~~~~~~g~~---~~l~~i~~~~~~~~~~l~vD~a~g~~~~~-----~~~~~~~~~~~~~D~~~~s~hK~l~~~-~g  285 (434)
T d2z67a1         215 VLSTLTFFPPRNS---DDIVEIAKICENYDIPHIINGAYAIQNNY-----YLEKLKKAFKYRVDAVVSSSDKNLLTP-IG  285 (434)
T ss_dssp             EEEESSCCTTBCC---CCHHHHHHHHHHHTCCEEEECTTTTTCHH-----HHHHHHHHHTSCCSEEEEEHHHHHCCC-SS
T ss_pred             EEeccCcCCCccc---cCHHHHHHHHHHhCCeEEEeccchhhhhh-----ccccccccccCCcceEEEcCccccccC-CC
Confidence            8888999999999   88999999999999999999997653310     111111223345567888999987633 22


Q ss_pred             cceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          313 IGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       313 iG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                      .|++  .++++..    .+.............+.....+....+..        +.++...++..++.+++.+.|+ ++.
T Consensus       286 ~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~a~l~~~~~--------~g~~~~~~~~~~~a~~l~~~L~-~l~  350 (434)
T d2z67a1         286 GGLV--YSTDAEF----IKEISLSYPGRASATPVVNTLVSLLSMGS--------KNYLELVKNQKNSKKLLDELLN-DLS  350 (434)
T ss_dssp             CEEE--EESCHHH----HHHHHTTSCSCBCSHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred             cccc--ccCcHHH----HHHHHhhcccccccchHHHHHHHHHHHHH--------hcchhHHHHHHHHHHHHHHHHH-Hhh
Confidence            4454  4567663    33344332222222333333333222221        2234555555666666666665 431


Q ss_pred             CCCCcccccCC--cceeeecCCCHHHHHHHHhcccEEEcC----C-------------C--cEEEccC-ChhhHHHHHHH
Q 012647          393 SGKDWSFILRQ--IGMFSFTGLNKAQSDNMTNKWHVYMTK----D-------------G--RISLAGL-SLAKCEYLADA  450 (459)
Q Consensus       393 ~~~~~~~~~~~--~g~f~~~~l~~~~~~~ll~~~gI~v~~----g-------------g--Ris~~~~-~~e~i~~~~~~  450 (459)
                      ...++.+....  ..+++..+.+...+...+.+.||....    .             .  |++.+.. |+|||++++++
T Consensus       351 ~~~g~~ll~~~~~~~~~~~~~~~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~~~T~edID~~i~~  430 (434)
T d2z67a1         351 KKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSK  430 (434)
T ss_dssp             HHSSCCBCCCCCSSEEEEECSSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHH
T ss_pred             hhcCceecCCCCCceeeeecCCCHHHHHHHHHHcCCeeeehhhhccccCeeeecccCCCeEEEecCCCCCHHHHHHHHHH
Confidence            00012333222  223444566665544444456885321    1             0  6665432 89999999999


Q ss_pred             HHH
Q 012647          451 IID  453 (459)
Q Consensus       451 l~~  453 (459)
                      |++
T Consensus       431 L~k  433 (434)
T d2z67a1         431 LEK  433 (434)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            976

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.74  E-value=1.5e-16  Score=154.20  Aligned_cols=314  Identities=12%  Similarity=0.088  Sum_probs=192.7

Q ss_pred             CCccCcHHHHHHHHHHhhcCCCCCCCC--CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhC
Q 012647           98 LQPYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF  175 (459)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~  175 (459)
                      |+.++++.|+++|....    .+++++  .+-+.+.|+.++++++...     +..|++  +.|||++++.+  +...+.
T Consensus        25 GP~~v~~~Vl~am~~~~----~~hr~~ef~~i~~~~r~~l~~ll~~~~-----~~~i~~--~g~gT~~~~~~--~~~~~~   91 (377)
T d1vjoa_          25 GPSNAHPSVLQAMNVSP----VGHLDPAFLALMDEIQSLLRYVWQTEN-----PLTIAV--SGTGTAAMEAT--IANAVE   91 (377)
T ss_dssp             SCCCCCHHHHHHHSSCC----CCTTSHHHHHHHHHHHHHHHHHHTCCC-----SCEEEE--SSCHHHHHHHH--HHHHCC
T ss_pred             CCCCCCHHHHHHhCcCC----CCCCCHHHHHHHHHHHHHHHHHhCCCC-----CeEEEE--cCcHHHHHHHH--HHhccc
Confidence            44557899998875422    122322  2346788888888886532     345666  88899999998  555577


Q ss_pred             CCCEEEEcCCCCcch--HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHH
Q 012647          176 PGAKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEK  253 (459)
Q Consensus       176 ~gd~Vlv~~p~y~~~--~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~  253 (459)
                      +|+++++..-.+...  .......+.....+..  +.+...+.+..+.....  +.+.++.++..+|.||+.   .++++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~tg~~---~~i~~  164 (377)
T d1vjoa_          92 PGDVVLIGVAGYFGNRLVDMAGRYGADVRTISK--PWGEVFSLEELRTALET--HRPAILALVHAETSTGAR---QPLEG  164 (377)
T ss_dssp             TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEE---CCCTT
T ss_pred             cccccceeeechhhhhhhhhhhhhccccccccc--CCCCcccchhhhhhhhc--Ccceeeeeeeeeccceee---echhh
Confidence            999999888766543  2334455555555554  33445566666655444  256677778889999999   66788


Q ss_pred             HHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc-cCCCCcceEEEEeCChhHHHHHHHH
Q 012647          254 IADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNVVCSSSDLAARVKSQ  332 (459)
Q Consensus       254 i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~~~v~~~~~~~~~~~~~  332 (459)
                      |.++|+++|.++++|.+ +.++....+.         +..+.++++.|..|.++ ++|  +|+++.   .+..++.....
T Consensus       165 i~~~~~~~g~~~~vDa~-~~~g~~~~~~---------~~~~~d~~~~s~~K~~~gp~g--~~~~~~---~~~~~~~~~~~  229 (377)
T d1vjoa_         165 VGELCREFGTLLLVDTV-TSLGGVPIFL---------DAWGVDLAYSCSQKGLGCSPG--ASPFTM---SSRAIEKLQRR  229 (377)
T ss_dssp             HHHHHHHHTCEEEEECT-TTTTTSCCCT---------TTTTCSEEECCSSSTTCSCSS--CEEEEE---CHHHHHHHHTC
T ss_pred             hhhhhhhccceEEEecc-hhhhhhhhcc---------cccccceeeecccccccCCCE--EEEecc---hhhHHhhhhcc
Confidence            99999999999999999 5555332222         33345677888888764 444  666654   55533332210


Q ss_pred             H---------------HhhccccccCCchHHHHHH-HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 012647          333 L---------------KRLARPMYSNPPVHGARIV-ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKD  396 (459)
Q Consensus       333 ~---------------~~~~~~~~~~~~~~~~~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~  396 (459)
                      .               .......+..++....... ..++.     ..-...++...++.+++.+++.+.+. +.+.   
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~g~~~~~~~~~~~~~~l~~~l~-~~~~---  300 (377)
T d1vjoa_         230 RTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALR-----LIAQEGLANCWQRHQKNVEYLWERLE-DIGL---  300 (377)
T ss_dssp             SSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHH-----HHHHHCHHHHHHHHHHHHHHHHHHHH-HTTC---
T ss_pred             CCCCcceeeccchhhhccCcccccccccceechhhhHHHHh-----hhhhcCchHHHHHHHHHhhhhhhhhh-ccCc---
Confidence            0               0001111222333222222 11110     00022356778888888999999998 7653   


Q ss_pred             cccccCC----cce--eeec-CCCHH-HHHHHHhcccEEEcCC------C--cEE-EccC-ChhhHHHHHHHHHHHHh
Q 012647          397 WSFILRQ----IGM--FSFT-GLNKA-QSDNMTNKWHVYMTKD------G--RIS-LAGL-SLAKCEYLADAIIDSYH  456 (459)
Q Consensus       397 ~~~~~~~----~g~--f~~~-~l~~~-~~~~ll~~~gI~v~~g------g--Ris-~~~~-~~e~i~~~~~~l~~~~~  456 (459)
                       ..+.+.    .+.  |... +++.+ ++..|++++||.+..|      +  ||| ++.. ++|+|++++++|+++++
T Consensus       301 -~~~~~~~~rs~~v~~~~~p~~~~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~  377 (377)
T d1vjoa_         301 -SLHVEKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR  377 (377)
T ss_dssp             -CBSSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred             -eeecChHhcCCeEEEEECCCCCCHHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence             222111    122  2222 45554 4567888889998765      2  998 4533 68899999999999874

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.73  E-value=1.1e-16  Score=155.75  Aligned_cols=316  Identities=11%  Similarity=0.097  Sum_probs=194.3

Q ss_pred             CCccCcHHHHHHHHHHhhcCCCCCCCC--CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhC
Q 012647           98 LQPYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF  175 (459)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~  175 (459)
                      |+..++++|++||....    .++++.  .+-+.+.|+.++++++...     .+.|++  +.|||++++.+  +.+.+.
T Consensus        24 GP~~~~~~V~~Am~~~~----~~hr~~ef~~i~~~~r~~L~~ll~~~~-----~~~i~~--~gsgT~a~ea~--~~~l~~   90 (388)
T d2ch1a1          24 GPSNCSKRVLTAMTNTV----LSNFHAELFRTMDEVKDGLRYIFQTEN-----RATMCV--SGSAHAGMEAM--LSNLLE   90 (388)
T ss_dssp             SSCCCCHHHHHHTTSCC----CCTTCHHHHHHHHHHHHHHHHHHTCCC-----SCEEEE--SSCHHHHHHHH--HHHHCC
T ss_pred             CCCCCCHHHHHHhCcCC----CCCCCHHHHHHHHHHHHHHHHHhCCCC-----CeEEEE--cCcHHHHHHHH--HHHhcc
Confidence            44456899998875432    233332  2455788888988886531     344556  78899999998  555577


Q ss_pred             CCCEEEEcCCCCcchH--HHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHH
Q 012647          176 PGAKVLISSPTWGNHK--NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEK  253 (459)
Q Consensus       176 ~gd~Vlv~~p~y~~~~--~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~  253 (459)
                      +|++|++..-.+....  ...+..+...+.++.  +++...+.+..++....  .+++++.+++.+|.||..   .+.++
T Consensus        91 ~~~~vl~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~t~tG~~---~~~~~  163 (388)
T d2ch1a1          91 EGDRVLIAVNGIWAERAVEMSERYGADVRTIEG--PPDRPFSLETLARAIEL--HQPKCLFLTHGDSSSGLL---QPLEG  163 (388)
T ss_dssp             TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC--CTTSCCCHHHHHHHHHH--HCCSEEEEESEETTTTEE---CCCTT
T ss_pred             ccccccccccccccccchhhhhhhccccccccc--ccccccchhhhhhhhcc--CCcceeeeeecccccccc---cchhh
Confidence            8999998887765443  345667888777777  44556788888777655  256677788899999999   55667


Q ss_pred             HHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc-ccCCCCcceEEEEeCChhHHHHHHHH
Q 012647          254 IADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARVKSQ  332 (459)
Q Consensus       254 i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~  332 (459)
                      |+++|+++|.++++|.+ +.++....+.         +..+.++++.|-.|.+ +++|  +|++++   ++...+.....
T Consensus       164 i~~~~~~~~~~~~vD~~-ss~g~~pid~---------~~~~~d~~~~s~~K~~~gp~G--~g~~~~---~~~~~~~~~~~  228 (388)
T d2ch1a1         164 VGQICHQHDCLLIVDAV-ASLCGVPFYM---------DKWEIDAVYTGAQKVLGAPPG--ITPISI---SPKALDVIRNR  228 (388)
T ss_dssp             HHHHHHHTTCEEEEECT-TTBTTBCCCT---------TTTTCCEEECCCC-CCCCCSS--CEEEEE---CHHHHHHHHTC
T ss_pred             hcchhccccceeeeeee-ecccccccch---------hccCceEEEEccccccCCCCe--EEEEec---cHHHHHhhhcc
Confidence            88899999999999999 6666543332         3345677888888877 5555  677765   66544332211


Q ss_pred             HHhh------------------cccccc-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012647          333 LKRL------------------ARPMYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS  393 (459)
Q Consensus       333 ~~~~------------------~~~~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  393 (459)
                      ....                  ....+. .++......+...+....     .........+.++........+. ..+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~  302 (388)
T d2ch1a1         229 RTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIA-----EEGLENQIKRRIECAQILYEGLG-KMGL  302 (388)
T ss_dssp             SSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHH-HHTC
T ss_pred             cCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHHHHhhhh-hccc
Confidence            0000                  001111 222222222222221100     11223444444555555555555 4432


Q ss_pred             CCCcccccC-----Ccce--eee-cCCCH-HHHHHHHhcccEEEcCCC--------cEE-EccC-ChhhHHHHHHHHHHH
Q 012647          394 GKDWSFILR-----QIGM--FSF-TGLNK-AQSDNMTNKWHVYMTKDG--------RIS-LAGL-SLAKCEYLADAIIDS  454 (459)
Q Consensus       394 ~~~~~~~~~-----~~g~--f~~-~~l~~-~~~~~ll~~~gI~v~~gg--------Ris-~~~~-~~e~i~~~~~~l~~~  454 (459)
                          ....+     ..+.  |.+ -+++. ++...|++++||.+.+|.        ||| ++.. ++|+|++++++|+++
T Consensus       303 ----~~~~~~~~~rs~~v~~~~~p~g~~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~  378 (388)
T d2ch1a1         303 ----DIFVKDPRHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKES  378 (388)
T ss_dssp             ----CBSSCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred             ----ccccCCHHHhCCeEEEEECCCCCCHHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHHHHHH
Confidence                11111     1122  222 25665 556788888899998762        999 6655 679999999999999


Q ss_pred             Hhhc
Q 012647          455 YHNV  458 (459)
Q Consensus       455 ~~~~  458 (459)
                      ++..
T Consensus       379 L~~~  382 (388)
T d2ch1a1         379 LKAT  382 (388)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            9864

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.71  E-value=6e-15  Score=141.15  Aligned_cols=281  Identities=15%  Similarity=0.118  Sum_probs=186.4

Q ss_pred             CCCCC--CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----
Q 012647          120 KEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----  193 (459)
Q Consensus       120 ~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~----  193 (459)
                      +.|+-  ......|.+.++.+-.+        +.-++  +++|..|+..+  ++..+.+||+|+++...|.+-...    
T Consensus        55 ~~Y~R~~nPT~~~LE~~la~LEgg--------~~a~~--~sSGmaAi~~~--l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~  122 (397)
T d1y4ia1          55 YIYTRLGNPTTDALEKKLAVLERG--------EAGLA--TASGISAITTT--LLTLCQQGDHIVSASAIYGCTHAFLSHS  122 (397)
T ss_dssp             SCCCTTSCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEESSSCHHHHHHHHTH
T ss_pred             ceeeCCCCHHHHHHHHHHHHHhCC--------cccee--ehHHHHHHHHH--HhhccCCCCeeeeecccccccchhhhcc
Confidence            45543  34556788888888543        23444  68999999887  667788999999999999766554    


Q ss_pred             hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCC
Q 012647          194 FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG  273 (459)
Q Consensus       194 ~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~  273 (459)
                      +...|.++..++.       -|++.+++++++   ++++|++-+|.|||..+   .++++|+++|+++|+++++|..|..
T Consensus       123 l~~~Gi~~~~vd~-------~d~~~~~~~i~~---~Tklv~~Esp~NP~l~v---~Di~~i~~iA~~~gi~~vvDnT~at  189 (397)
T d1y4ia1         123 MPKFGINVRFVDA-------GKPEEIRAAMRP---ETKVVYIETPANPTLSL---VDIETVAGIAHQQGALLVVDNTFMS  189 (397)
T ss_dssp             HHHTTCEEEEECT-------TSHHHHHHHCCT---TEEEEEEESSCTTTCCC---CCHHHHHHHHHHTTCEEEEECTTTC
T ss_pred             cCCCceEeeccCC-------CCHHHHHHhcCC---CCcEEEecCCcccceee---cccHHHHHHhhcCCceEEecCcccC
Confidence            4477988887754       278999999975   89999999999999999   7788899999999999999999765


Q ss_pred             CCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHH
Q 012647          274 FASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVA  353 (459)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (459)
                      .....      ++     ..+-++++.|.+|.++-.+--+|.+  ++.+++.+.+++  +...........+...+..+.
T Consensus       190 P~~~~------Pl-----~~GaDivihS~TKyi~Ghsdvl~G~--v~~~~~~~~~~r--~~~~~~~~G~~l~p~~a~l~~  254 (397)
T d1y4ia1         190 PYCQQ------PL-----QLGADIVVHSVTKYINGHGDVIGGI--IVGKQEFIDQAR--FVGLKDITGGCMSPFNAWLTL  254 (397)
T ss_dssp             TTTCC------GG-----GGTCSEEEEETTTTTTCSSCCCCEE--EEECHHHHHHHH--HTHHHHTTCCCCCHHHHHHHH
T ss_pred             cccCc------ch-----hcCCCEEEEehhhhcCCCcceeeec--cCCCHHHHHHHH--HHHHHhCcCCcCCHHHHHHHH
Confidence            44321      11     1235689999999997777777777  344666444322  111111112244555555555


Q ss_pred             HHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcc-cc-----------------cCCcceeeec-CCCH
Q 012647          354 NVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWS-FI-----------------LRQIGMFSFT-GLNK  414 (459)
Q Consensus       354 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~~-----------------~~~~g~f~~~-~l~~  414 (459)
                      .-|+.          +..+.++..++...+.+.|+ +.+.   ++ +.                 ...||++.|. .-+.
T Consensus       255 rgl~T----------L~lRm~~~~~nA~~lA~~L~-~hp~---V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~~  320 (397)
T d1y4ia1         255 RGVKT----------LGIRMERHCENALKIARFLE-GHPS---ITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGL  320 (397)
T ss_dssp             HHHTT----------HHHHHHHHHHHHHHHHHHHH-TCTT---EEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTHH
T ss_pred             cCcCc----------HHHHHHHHHHHHHHHHHHHH-hCCC---cCeEeCCCCCCCccccccccccCCCCeEEEEEecCCH
Confidence            55543          34455666777778888887 6532   11 11                 1136666663 2234


Q ss_pred             HHHHHHHhcccEE---EcCC-------------------------C------cEEEccCChhhHHHHHHHHHHHHhh
Q 012647          415 AQSDNMTNKWHVY---MTKD-------------------------G------RISLAGLSLAKCEYLADAIIDSYHN  457 (459)
Q Consensus       415 ~~~~~ll~~~gI~---v~~g-------------------------g------Ris~~~~~~e~i~~~~~~l~~~~~~  457 (459)
                      +.+.++++.-.+.   +.=|                         |      |||++-   |+.+.+++-|.+++++
T Consensus       321 ~~~~~f~~~L~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvGl---Ed~~DLi~Dl~~AL~~  394 (397)
T d1y4ia1         321 EAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGL---EDPEDIINDLEHAIRK  394 (397)
T ss_dssp             HHHHHHHHTCSSSEECSCCSCSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCccceeeccCcccceeeCccccccccCCHHHHHHcCCCcCEEEEEecc---CCHHHHHHHHHHHHHH
Confidence            4455655543322   1111                         2      999975   6777788888887765

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.70  E-value=7e-15  Score=140.35  Aligned_cols=276  Identities=14%  Similarity=0.100  Sum_probs=181.6

Q ss_pred             cccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh----hCCCCe
Q 012647          126 EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVPW  201 (459)
Q Consensus       126 ~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~G~~v  201 (459)
                      .....|.+.+|.+-.+        +..+.  +++|..|+..   ++..+.+||+|++..+.|......++    ..|.++
T Consensus        49 Pt~~~le~~la~LE~~--------~~a~~--fsSGMaAisa---ll~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~  115 (380)
T d1ibja_          49 PTRDALESLLAKLDKA--------DRAFC--FTSGMAALSA---VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVV  115 (380)
T ss_dssp             HHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHH---HHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEE
T ss_pred             hHHHHHHHHHHHHcCC--------ceEEe--hhhHHHHHHH---HHHhhCCCCEEEEEecccccccchhhhhhccccccc
Confidence            3456788888888433        33445  6888888864   46667899999999999988766655    457666


Q ss_pred             eeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCC
Q 012647          202 SEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN  281 (459)
Q Consensus       202 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~  281 (459)
                      ..++.       .|++.+++++++   +++++++.+|.|||..+   .++++|+++|+++|+++|+|+.+.......   
T Consensus       116 ~~~d~-------~~~~~~~~ai~~---~t~li~~EtpsNP~l~v---~Di~~i~~iA~~~g~~~vVDnT~atP~~~~---  179 (380)
T d1ibja_         116 KRVNT-------TKLDEVAAAIGP---QTKLVWLESPTNPRQQI---SDIRKISEMAHAQGALVLVDNSIMSPVLSR---  179 (380)
T ss_dssp             EEECT-------TSHHHHHHHCCS---SEEEEEECSSCTTTCCC---CCHHHHHHHHHTTTCEEEEECTTTCTTTCC---
T ss_pred             cccCc-------chHHHHHHHhcc---CccEEEecccccccccc---ccHHHHHHHHHHcCCeEEeecccccccccc---
Confidence            66543       378899988875   89999999999999999   677889999999999999999986544221   


Q ss_pred             ChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhh
Q 012647          282 DASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPAL  361 (459)
Q Consensus       282 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~  361 (459)
                         ++     ..+-++++.|.+|.++-.|--+|.+++ .++++..+.+......    .....+...+..+..-|++   
T Consensus       180 ---Pl-----~~GaDiVvhS~TKyi~GhsDv~~G~v~-~~~~~~~~~~~~~~~~----~G~~l~p~~a~ll~rgl~T---  243 (380)
T d1ibja_         180 ---PL-----ELGADIVMHSATKFIAGHSDVMAGVLA-VKGEKLAKEVYFLQNS----EGSGLAPFDCWLCLRGIKT---  243 (380)
T ss_dssp             ---GG-----GTTCSEEEEETTTTTTCSSCCCCEEEE-ECSHHHHHHHHHHHHH----TTCBCCHHHHHHHHHHHTT---
T ss_pred             ---cc-----ccCCCEEEecccceeccccCccccccc-cchhhHHHHHHhhccc----cCCcCCHHHHHHHHhcchh---
Confidence               11     224579999999999867766666643 4556544444443222    2223444455555544443   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC------CCCcccc----------cCCcceeeecCCCHHHHHHHHhccc
Q 012647          362 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS------GKDWSFI----------LRQIGMFSFTGLNKAQSDNMTNKWH  425 (459)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~------~~~~~~~----------~~~~g~f~~~~l~~~~~~~ll~~~g  425 (459)
                             +..+.++..++...+.+.|+ +.+.      |+ +.-.          ...+|++.+.--+.+.+.++++.-.
T Consensus       244 -------l~lRm~~~~~nA~~lA~~L~-~hp~V~~V~yPg-l~s~p~~~~a~~~~~~~g~~~s~~~~~~~~a~~f~d~l~  314 (380)
T d1ibja_         244 -------MALRIEKQQENARKIAMYLS-SHPRVKKVYYAG-LPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTK  314 (380)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHH-TCTTCCEEECTT-STTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCS
T ss_pred             -------hhhhHHHHHHHHHHHHHHHH-hCCCeeEEeccc-cccCccccccccccccccccccccccHHHHHHHHHHhCC
Confidence                   35556677777788888887 6532      11 0000          1123444443225555555554433


Q ss_pred             E---EEcCC-------------------------C------cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          426 V---YMTKD-------------------------G------RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       426 I---~v~~g-------------------------g------Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      +   .+.=|                         |      |||++-   |+.+.+++-|.++++.+
T Consensus       315 l~~~a~SlG~~~SLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGl---E~~eDLi~Dl~qAl~~l  378 (380)
T d1ibja_         315 YFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI---EDVDDLISDLDIAFKTF  378 (380)
T ss_dssp             SSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS---SCHHHHHHHHHHHHHSC
T ss_pred             cCeEeeccCCccccccCchhhhhhcCCHHHHHHcCCCcCeEEEEecc---CCHHHHHHHHHHHHHhc
Confidence            2   11111                         2      999975   78888999999998764

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.69  E-value=3e-15  Score=143.21  Aligned_cols=215  Identities=17%  Similarity=0.153  Sum_probs=150.8

Q ss_pred             cccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh----hCCCCe
Q 012647          126 EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVPW  201 (459)
Q Consensus       126 ~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~G~~v  201 (459)
                      .....|.+.++++-.+        +..++  +++|..|+..+  +++.+.+||+|++++..|.+....++    ..|.++
T Consensus        59 PT~~~LE~~la~LEg~--------~~a~~--~~SGmaAi~~~--l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~  126 (392)
T d1gc0a_          59 PTLNLLEARMASLEGG--------EAGLA--LASGMGAITST--LWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKL  126 (392)
T ss_dssp             HHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEE
T ss_pred             hHHHHHHHHHHHHhCC--------cceee--hhhHHHHHHHH--HHhhccCCCeeecccccchhhhhhhhhhhccCCccc
Confidence            4567888899988543        34445  69999999888  66678899999999999987665554    568877


Q ss_pred             eeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCC
Q 012647          202 SEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN  281 (459)
Q Consensus       202 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~  281 (459)
                      ..++.       -|++.+++++++   ++++|++-+|.|||..+   .++++|+++|+++|+++++|..|..-....   
T Consensus       127 ~~~d~-------~d~~~~~~ai~~---~t~lv~~Esp~NP~l~v---~Di~~i~~ia~~~g~~~vvDnT~atP~~~~---  190 (392)
T d1gc0a_         127 RHVDM-------ADLQALEAAMTP---ATRVIYFESPANPNMHM---ADIAGVAKIARKHGATVVVDNTYCTPYLQR---  190 (392)
T ss_dssp             EEECT-------TCHHHHHHHCCT---TEEEEEEESSCTTTCCC---CCHHHHHHHHGGGTCEEEEECTTTHHHHCC---
T ss_pred             ccCCc-------cCHHHHHHhCCC---CCeEEEecccccceeee---cchHHHHHHHHhcCCEEEEecCccCccccC---
Confidence            77754       378999999986   89999999999999999   788889999999999999999975332210   


Q ss_pred             ChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhh
Q 012647          282 DASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPAL  361 (459)
Q Consensus       282 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~  361 (459)
                         ++     +.+-++++.|.+|.++-.|--+|.++  +.+++.+.+++....+  .......+...+..+..-|+.   
T Consensus       191 ---Pl-----~~GaDivihS~TKyi~Ghsd~~~G~v--~~~~~~~~~~r~~~~~--~~~G~~~~p~da~ll~rgl~T---  255 (392)
T d1gc0a_         191 ---PL-----ELGADLVVHSATKYLSGHGDITAGIV--VGSQALVDRIRLQGLK--DMTGAVLSPHDAALLMRGIKT---  255 (392)
T ss_dssp             ---GG-----GGTCSEEEEETTTTTTCSSSCCCEEE--EECHHHHHHHHHTHHH--HHTCCCCCHHHHHHHHHHHTT---
T ss_pred             ---hH-----HhCCCEEEEecceeecCCcccccccc--cchhHHHHHHHHHHHH--HccCCcCChhhHHHHHhcccc---
Confidence               11     22456899999999975665566663  3466644443221111  111223444455555544443   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012647          362 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKD  391 (459)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  391 (459)
                             +..+.++..++...+.+.|+ +.
T Consensus       256 -------L~lRm~~~~~nA~~lA~~L~-~h  277 (392)
T d1gc0a_         256 -------LNLRMDRHCANAQVLAEFLA-RQ  277 (392)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHH-TC
T ss_pred             -------HHHHHHHHHHHHHHHHHHHH-hC
Confidence                   35556666777778888887 55

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.69  E-value=7.8e-15  Score=142.24  Aligned_cols=201  Identities=15%  Similarity=0.121  Sum_probs=144.9

Q ss_pred             ccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCE
Q 012647          100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK  179 (459)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~  179 (459)
                      |.+..+-.+++.+.++.+. ..+....-+.+|.+.+|++++.        ++.+.  +++||.|+.++.+.+ .+.+||+
T Consensus         9 p~~~~~~~~~~~~~l~~g~-~~~~~g~~v~~fE~~~a~~~g~--------~~~v~--~~SGt~Al~lal~~l-~~~~gde   76 (384)
T d1b9ha_           9 PQYDDAERNGLVRALEQGQ-WWRMGGDEVNSFEREFAAHHGA--------AHALA--VTNGTHALELALQVM-GVGPGTE   76 (384)
T ss_dssp             SCCCHHHHHHHHHHHHTSC-CBTTTCSHHHHHHHHHHHHTTC--------SEEEE--ESCHHHHHHHHHHHT-TCCTTCE
T ss_pred             CCCCHHHHHHHHHHHHcCC-eeecCCHHHHHHHHHHHHHHCc--------CeEEE--eCCHHHHHHHHHHHc-CCCCCCE
Confidence            3455777888888887653 2233445578999999999644        45666  899999999984322 2569999


Q ss_pred             EEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 012647          180 VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQ  259 (459)
Q Consensus       180 Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~  259 (459)
                      |+++..+|......+...|++++.++.+ +.++.+|++.+++.+.+   ++++++   +-+..|..   .++++|.++|+
T Consensus        77 Vi~p~~t~~a~~~ai~~~g~~p~~~d~~-~~~~~~d~~~~~~~i~~---~tk~i~---~~~~~g~~---~d~~~i~~~~~  146 (384)
T d1b9ha_          77 VIVPAFTFISSSQAAQRLGAVTVPVDVD-AATYNLDPEAVAAAVTP---RTKVIM---PVHMAGLM---ADMDALAKISA  146 (384)
T ss_dssp             EEEESSSCTHHHHHHHHTTCEEEEECBC-TTTCCBCHHHHHHHCCT---TEEEEC---CBCGGGCC---CCHHHHHHHHH
T ss_pred             EEEecccccccccccccccccccccccc-ccccccchhhhcccccc---cccccc---cccccccc---cccccchhhhh
Confidence            9999999999999999999999999985 56788999999998875   788877   35666776   67888999999


Q ss_pred             hcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHH
Q 012647          260 EKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQL  333 (459)
Q Consensus       260 ~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~  333 (459)
                      ++++++|+|.+. .++.. .+...     ....++-.++..+.+|.++ .|. =|.+  ++.+++..+.+....
T Consensus       147 ~~~i~lieD~a~-a~ga~-~~g~~-----~g~~g~~~~~Sf~~~K~i~-~g~-GG~i--~t~~~~~~~~~~~~~  209 (384)
T d1b9ha_         147 DTGVPLLQDAAH-AHGAR-WQGKR-----VGELDSIATFSFQNGKLMT-AGE-GGAV--VFPDGETEKYETAFL  209 (384)
T ss_dssp             HHTCCBCEECTT-CTTCE-ETTEE-----GGGSSSCEEEECCTTSSSC-SSS-CEEE--EECTTCHHHHHHHHH
T ss_pred             hhhhhhhhhhce-ecccc-cCCEe-----cCcccccceeccccccccc-ccc-cchh--hhhhHHHHHHHHHHH
Confidence            999999999994 44321 00111     1122344555566689987 443 3444  467777666655443

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=6.2e-15  Score=145.39  Aligned_cols=338  Identities=13%  Similarity=0.022  Sum_probs=201.8

Q ss_pred             ccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCcccc-C--ceEEeecccchhHHHHHHHHHHH-h-
Q 012647          100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-Q--RVATVQGLSGTGSLRLAAALIER-Y-  174 (459)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~-~--~i~~~~t~ggt~a~~l~~~~~~~-~-  174 (459)
                      .+.+|.+.+.+.+.++.+. ..+.......++.+.+.+++....|.+... +  .=.+  |+|||+|+.++....+. + 
T Consensus        64 t~~~~~~~~l~~~~~~~N~-~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~--t~GgSeA~~~a~~aar~~~~  140 (450)
T d1pmma_          64 TWDDENVHKLMDLSINKNW-IDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTN--TIGSSEACMLGGMAMKWRWR  140 (450)
T ss_dssp             CCCCHHHHHHHHHTTTCBT-TCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEE--ESSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhcCC-CCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCee--eCchHHHHHHHHHHHHHHHH
Confidence            3457888898888876542 233222333455555555544433432111 1  1245  89999999997433221 1 


Q ss_pred             -------CC-CCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCC
Q 012647          175 -------FP-GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDP  246 (459)
Q Consensus       175 -------~~-gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~  246 (459)
                             .+ ...++++...+..+...++..|++++.+|.+ +.++.+|+++|++++++   .+++++.+.++|.||.+=
T Consensus       141 ~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~~-~~~~~~d~~~L~~~i~~---~t~~Vv~t~gtt~tG~~d  216 (450)
T d1pmma_         141 KRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMR-PGQLFMDPKRMIEACDE---NTIGVVPTFGVTYTGNYE  216 (450)
T ss_dssp             HHHHHHTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCCB-TTBCSCCHHHHHHHCCT---TEEEEECBBSCTTTCBBC
T ss_pred             HHhhhcCCCCCCceEEecccHHHHHHHHHHcCCCceEeeec-CCCCcCcHHHHHHHhhh---CceEEEeeeeeccCCCcc
Confidence                   12 2357888888889999999999999999986 45689999999999986   888999899999999995


Q ss_pred             CHHHHHHHHH---HHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCCh
Q 012647          247 TPEQWEKIAD---VIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS  323 (459)
Q Consensus       247 s~~~l~~i~~---l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~  323 (459)
                      +.+++.+|++   .|+++|+++++|.||.++... +..+...  .......-+.+..|.+|.++. ...+||+.  .+++
T Consensus       217 pv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p-~~~~~~~--~~~~~~~aDSi~~s~HK~~~~-p~g~g~l~--~r~~  290 (450)
T d1pmma_         217 FPQPLHDALDKFQADTGIDIDMHIDAASGGFLAP-FVAPDIV--WDFRLPRVKSISASGHKFGLA-PLGCGWVI--WRDE  290 (450)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHH-HHCTTCC--CSTTSTTEEEEEEETTTTTCC-CSSCEEEE--ESSG
T ss_pred             ccchhhHHHHHHHHHhccCcEEEeehhhccceee-eechhhh--hhhcccceeEeecChhhccCC-CCCeeEEE--ecCh
Confidence            5554443333   356789999999998765410 0000000  001122467788999997652 24489984  4555


Q ss_pred             hHHHHHHHH----HHhhccccccCCchH-HHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcc
Q 012647          324 DLAARVKSQ----LKRLARPMYSNPPVH-GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWS  398 (459)
Q Consensus       324 ~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~  398 (459)
                      +........    +.......+...+.. .+.+...+    .+...-.+.++++.++..++.+++.+.|+ +.+.   ++
T Consensus       291 ~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~----~l~~~G~~G~~~~~~~~~~la~~l~~~L~-~~~~---~e  362 (450)
T d1pmma_         291 EALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYY----EFLRLGREGYTKVQNASYQVAAYLADEIA-KLGP---YE  362 (450)
T ss_dssp             GGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTSC---EE
T ss_pred             hhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHH----HHhhhhHHHHHHHHHHHHHHHHHHHHHHH-hCCC---eE
Confidence            421110000    000000011111111 11111111    01111135578888999999999999999 7752   45


Q ss_pred             cccC---C--cceeeec-------CCCHHHHHHHHhcccEEEc----CCC-------cEEEccC-ChhhHHHHHHHHHHH
Q 012647          399 FILR---Q--IGMFSFT-------GLNKAQSDNMTNKWHVYMT----KDG-------RISLAGL-SLAKCEYLADAIIDS  454 (459)
Q Consensus       399 ~~~~---~--~g~f~~~-------~l~~~~~~~ll~~~gI~v~----~gg-------Ris~~~~-~~e~i~~~~~~l~~~  454 (459)
                      ++.+   .  -+.++|.       +++...+...|.++|..+.    |..       |+.+... ++++++.+++.|+++
T Consensus       363 l~~~~~p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~~~~p~~~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~  442 (450)
T d1pmma_         363 FICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKAS  442 (450)
T ss_dssp             EEEECCTTTBSSEEEEEECTTCCCSSCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCceEEEEEecCCcccCCCCHHHHHHHHHHcCCeeeccCcCCCcCCcEEEEEEccCCCCHHHHHHHHHHHHHH
Confidence            4422   2  2234442       3455455555555686542    321       8887653 788999999999999


Q ss_pred             Hhhc
Q 012647          455 YHNV  458 (459)
Q Consensus       455 ~~~~  458 (459)
                      ++++
T Consensus       443 v~~l  446 (450)
T d1pmma_         443 LKYL  446 (450)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9876

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.67  E-value=7.6e-15  Score=142.06  Aligned_cols=330  Identities=13%  Similarity=0.043  Sum_probs=196.4

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (459)
                      +...||+..|.--...|+.  .|+|.+++.+.++.....   +..-..+.+..+++.+......  ..+.+.+  +.+|+
T Consensus        36 G~~ylD~~~g~~~~~lGh~--hp~v~~a~~~~~~~~~~~---~~~~~~~~~~~la~~l~~~~~~--~~~~v~f--~~sGs  106 (387)
T d1vefa1          36 GNEYIDCVGGYGVANLGHG--NPEVVEAVKRQAETLMAM---PQTLPTPMRGEFYRTLTAILPP--ELNRVFP--VNSGT  106 (387)
T ss_dssp             SCEEEESSHHHHTCTTCBT--CHHHHHHHHHHHHHCCCC---CTTSCCHHHHHHHHHHHHTSCT--TEEEEEE--ESSHH
T ss_pred             CCEEEEcchhHHhhhhcCC--cHHHHHHHHHHHHhhccc---ccccCCchHHHHHHHhhhhccc--cceeecc--ccCch
Confidence            3578898777543333443  789999999888653211   1111123444555444333211  1256888  99999


Q ss_pred             hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhh-CC------------CCeeeeeeecCCCCCCCHHHHHHHHHcCCC
Q 012647          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-AR------------VPWSEYRYYDPKTVGLDFEGMIADIKAAPG  228 (459)
Q Consensus       162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~G------------~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~  228 (459)
                      +|++.+.++.+.+....+|+....+|.+....... .|            ..+..+|.       .|++.+++.+.+   
T Consensus       107 eA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~-------~d~~~l~~~~~~---  176 (387)
T d1vefa1         107 EANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-------NDVEALKRAVDE---  176 (387)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-------TCHHHHHHHCCT---
T ss_pred             HHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCC-------CCHHHHHHhcCC---
Confidence            99999998887777778999999888654322221 11            12223332       278889888865   


Q ss_pred             CcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc
Q 012647          229 GSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (459)
Q Consensus       229 ~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  307 (459)
                      ....+|+.......|. .++++-+++|.++|++||+++|.||+..+++-.+   ..+... ..+-.++++   .++|.++
T Consensus       177 ~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G---~~~~~~-~~~v~PDi~---~~gK~l~  249 (387)
T d1vefa1         177 ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTG---KRFAFE-HFGIVPDIL---TLAKALG  249 (387)
T ss_dssp             TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSTHH-HHTCCCSEE---EECGGGG
T ss_pred             CeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccC---CCcccc-cCCcCCcee---eecccCC
Confidence            5556665444555675 4778889999999999999999999988885332   122222 234445655   5789998


Q ss_pred             cCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          308 LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSL  387 (459)
Q Consensus       308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  387 (459)
                       .|+-++.+.+   .++    +...+.......+.+.+.++..++...|+   ..   ++  ....++.+++.+++.+.|
T Consensus       250 -gG~~~~~~~~---~~~----~~~~~~~~~~g~T~~gnPla~aaa~a~L~---~l---~~--~~~~~~v~~~g~~l~~~L  313 (387)
T d1vefa1         250 -GGVPLGVAVM---REE----VARSMPKGGHGTTFGGNPLAMAAGVAAIR---YL---ER--TRLWERAAELGPWFMEKL  313 (387)
T ss_dssp             -TTSSCEEEEE---EHH----HHHTSCTTSSCCSSTTCHHHHHHHHHHHH---HH---HH--HTTHHHHHHHHHHHHHHH
T ss_pred             -CCcccccccc---cee----eeeccccCCccccCCCCcchhhhcccchh---hc---cc--ccccchHhhhhHHHHHHH
Confidence             7888888765   555    33333222222222444555445443332   11   10  244566677778888888


Q ss_pred             hhccCCCCCcccccCCcceeee--cCCCHHHHHHHHhcccEEEcCCC----cEEEc-cCChhhHHHHHHHHHHHH
Q 012647          388 SAKDKSGKDWSFILRQIGMFSF--TGLNKAQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       388 ~~~~g~~~~~~~~~~~~g~f~~--~~l~~~~~~~ll~~~gI~v~~gg----Ris~~-~~~~e~i~~~~~~l~~~~  455 (459)
                      + ++..+. +.-+...|.++.+  ..-....+..++.++|+.+.+.|    |++.+ ..+++++++++++|++++
T Consensus       314 ~-~l~~~~-v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~g~l~~~~g~~~ir~~Ppl~it~~~ld~~~~~i~~aL  386 (387)
T d1vefa1         314 R-AIPSPK-IREVRGMGLMVGLELKEKAAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL  386 (387)
T ss_dssp             H-TSCCTT-EEEEEEETTEEEEEESSCSHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             H-hcCCCc-eEEEeecceEEEEEEeCCchHHHHHHHHHCCCeEEecCCCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence            8 764211 1112222222211  11133445555444588766654    55532 238999999999999886

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.67  E-value=4e-14  Score=135.58  Aligned_cols=281  Identities=11%  Similarity=0.101  Sum_probs=182.7

Q ss_pred             CCCCC--CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh--
Q 012647          120 KEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN--  195 (459)
Q Consensus       120 ~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~--  195 (459)
                      +.|+-  ......|.+.+|++-.+        +..++  +++|..|+..+  +++.+.+||+|++....|.+....++  
T Consensus        59 ~~Y~R~~nPt~~~LE~~la~LEgg--------~~a~~--~sSGMaAi~~~--l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~  126 (398)
T d1qgna_          59 FEYGRYGNPTTVVLEEKISALEGA--------ESTLL--MASGMCASTVM--LLALVPAGGHIVTTTDCYRKTRIFIETI  126 (398)
T ss_dssp             CCBGGGCCHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHHSCSSCEEEEETTSCHHHHHHHHHT
T ss_pred             ceecCCCChHHHHHHHHHHHHhCC--------ceEEE--ecCcchHHHHH--Hhhcccccccccccccccchhhhhhccc
Confidence            44543  34456788888888533        34555  79999999987  66668899999999999987655544  


Q ss_pred             --hCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCC
Q 012647          196 --DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG  273 (459)
Q Consensus       196 --~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~  273 (459)
                        ..|.++..++.       .|.+..++.+..  ++++++++-+|.|||..+   .++++|+++|+++|+++++|+.+..
T Consensus       127 ~~~~gi~~~~~~~-------~~~~~~~~~~~~--~~t~~v~~EspsNP~l~v---~Di~~ia~ia~~~g~~~vVDnT~at  194 (398)
T d1qgna_         127 LPKMGITATVIDP-------ADVGALELALNQ--KKVNLFFTESPTNPFLRC---VDIELVSKLCHEKGALVCIDGTFAT  194 (398)
T ss_dssp             GGGGTCEEEEECS-------SCHHHHHHHHHH--SCEEEEEEESSCTTTCCC---CCHHHHHHHHHHTTCEEEEECTTTC
T ss_pred             ccccccccccccc-------cchhhhhhhhcc--ccceEEEccCcccccccc---chHHHHHHHHhhcCCEEEecceeec
Confidence              56777766643       244545544333  388999999999999999   6788899999999999999999864


Q ss_pred             CCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHH
Q 012647          274 FASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVA  353 (459)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (459)
                      .....      ++     ..+-++++.|.+|.++-.|--+|.+  ++.+++....+......    .....+...+..+.
T Consensus       195 P~~~~------Pl-----~~GaDiVihS~TKy~~Ghsdv~~G~--v~~~~~~~~~~~~~~~~----~G~~l~p~~a~ll~  257 (398)
T d1qgna_         195 PLNQK------AL-----ALGADLVLHSATKFLGGHNDVLAGC--ISGPLKLVSEIRNLHHI----LGGALNPNAAYLII  257 (398)
T ss_dssp             TTTCC------TT-----TTTCSEEEECTTTTTTCSSSCCCEE--EEECHHHHHHHHHHHHH----HCCCCCHHHHHHHH
T ss_pred             cccCC------ch-----hhCCCEEEEechhhcCcccceeehh--hcchhhhhhhhhhhccc----CCCcCCHHHHHHHH
Confidence            43221      11     2235689999999998777666665  45577755555443322    22244444445554


Q ss_pred             HHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcc-cc-----------------cCCcceeeec-CCCH
Q 012647          354 NVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWS-FI-----------------LRQIGMFSFT-GLNK  414 (459)
Q Consensus       354 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~~-----------------~~~~g~f~~~-~l~~  414 (459)
                      .-|+.          +..+.++..++...+.+.|+ +.+.   ++ +.                 ...||++.|. .-+.
T Consensus       258 rgl~T----------L~lRm~~~~~nA~~lA~~L~-~hp~---V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~~  323 (398)
T d1qgna_         258 RGMKT----------LHLRVQQQNSTALRMAEILE-AHPK---VRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL  323 (398)
T ss_dssp             HHGGG----------HHHHHHHHHHHHHHHHHHHH-TCTT---EEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH
T ss_pred             hcchH----------HHHHHHHHHHHHHHHHHHHH-hCCC---eeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCCH
Confidence            44432          45556677777788888887 6531   11 11                 1125555552 3355


Q ss_pred             HHHHHHHhcccE---EEcCC-------------------------C------cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          415 AQSDNMTNKWHV---YMTKD-------------------------G------RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       415 ~~~~~ll~~~gI---~v~~g-------------------------g------Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      +.+.+++++-.+   ...=|                         |      |||++-   |+.+.+++-|+++++.+
T Consensus       324 ~~a~~f~~~L~l~~~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGl---Ed~eDLi~Dl~~AL~~i  398 (398)
T d1qgna_         324 LTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV---EDFDDLKADILQALDSI  398 (398)
T ss_dssp             HHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS---SCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCcceeeeCCCCCcceeeCcchhccccCCHHHHHhcCCCcCEEEEEecc---CCHHHHHHHHHHHHhcC
Confidence            555555554332   11111                         2      999975   67788888888888764

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=3.8e-14  Score=135.28  Aligned_cols=216  Identities=13%  Similarity=0.085  Sum_probs=149.1

Q ss_pred             CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh----hCCCC
Q 012647          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVP  200 (459)
Q Consensus       125 ~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~G~~  200 (459)
                      ......|.+.++++-.+        +..+.  +++|..|+..+  ++..+.+||.|++....|......++    ..|.+
T Consensus        49 nPt~~~le~~la~LEgg--------~~a~~--~sSGMaAi~~~--l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~  116 (384)
T d1cs1a_          49 NPTRDVVQRALAELEGG--------AGAVL--TNTGMSAIHLV--TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYR  116 (384)
T ss_dssp             CHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCE
T ss_pred             CHHHHHHHHHHHHHhCC--------CceEE--ecChHHHHHHH--Hhhcccccceecccccccchhhhhhhhhhcccccc
Confidence            34556788888888533        34555  79999999887  66668899999999999976644443    45555


Q ss_pred             eeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCC
Q 012647          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (459)
Q Consensus       201 v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~  280 (459)
                      +..++.       .|.+.+++++++   ++++|++-+|.|||..+   .++++|+++|+++|+++|+|+.|.......  
T Consensus       117 ~~~~d~-------~d~~~~~~~~~~---~t~~v~~EspsNP~l~v---~Di~~i~~ia~~~g~~~vVDNT~atP~~~~--  181 (384)
T d1cs1a_         117 VLFVDQ-------GDEQALRAALAE---KPKLVLVESPSNPLLRV---VDIAKICHLAREVGAVSVVDNTFLSPALQN--  181 (384)
T ss_dssp             EEEECT-------TCHHHHHHHHHT---CCSEEEEECSCTTTCCC---CCHHHHHHHHHHTTCEEEEECTTTCTTTCC--
T ss_pred             cccccC-------CCHHHHHhhccc---cccEEEEecccccccee---ccHHHHhhhhhhcCcEEEEeccccCccccc--
Confidence            555432       378999999987   78899999999999999   677889999999999999999985443221  


Q ss_pred             CChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChh
Q 012647          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPA  360 (459)
Q Consensus       281 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  360 (459)
                          ++     ..+-++++.|.+|.++-.|--+|.++ +..+++..+.+......    .....+...+..+..-|+.  
T Consensus       182 ----Pl-----~~GaDiVvhS~TKyi~Ghsdv~~G~v-v~~~~~~~~~~~~~~~~----~G~~~~p~~a~ll~rgL~T--  245 (384)
T d1cs1a_         182 ----PL-----ALGADLVLHSCTKYLNGHSDVVAGVV-IAKDPDVVTELAWWANN----IGVTGGAFDSYLLLRGLRT--  245 (384)
T ss_dssp             ----GG-----GGTCSEEEEETTTTTTCSSCCCCEEE-EESSHHHHHHHHHHHHH----HTCBCCHHHHHHHHHHHTT--
T ss_pred             ----cc-----ccCCCEEEEccccccccCCCcccccc-cCCchhhhhhhhhhhhh----hhhccccccHHHHhhccch--
Confidence                11     12356889999999976776666654 35566644444332222    1223444444555444443  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          361 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                              +....++..++...+.+.|+ ..+
T Consensus       246 --------L~lRm~~~~~nA~~lA~~L~-~hp  268 (384)
T d1cs1a_         246 --------LVPRMELAQRNAQAIVKYLQ-TQP  268 (384)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHT-TCT
T ss_pred             --------hHHHHHHHHHHHHHHHHhcc-cCC
Confidence                    34555666777888888887 653

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=2.8e-15  Score=147.30  Aligned_cols=342  Identities=10%  Similarity=0.029  Sum_probs=189.3

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCC-C-CCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE-Y-LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~-Y-~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...||+..|.--...|+.  +|.|.+++.+.++...... + .......++-+.+.+.+....     .+.+.+  +++
T Consensus        39 G~~ylD~~~g~~~~~lGh~--~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~-----~~~v~f--~~s  109 (425)
T d1sffa_          39 GREYLDFAGGIAVLNTGHL--HPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDF-----AKKTLL--VTT  109 (425)
T ss_dssp             CCEEEESSHHHHTCTTCBT--CHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSS-----CEEEEE--ESS
T ss_pred             CCEEEEcCcCHHhhcccCC--cHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhhhhhcc-----cceeee--ecc
Confidence            4578899888543333443  7999999999886522111 1 112223345555555542211     246777  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh-hCCC-------------Ceeeeee--ecCCCCCCCHH-HHHHH
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARV-------------PWSEYRY--YDPKTVGLDFE-GMIAD  222 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~G~-------------~v~~v~~--~~~~~~~~d~e-~l~~~  222 (459)
                      |++|++.+.++.+......+|+....+|.+...... ..|.             .....+.  ...+....... ..++.
T Consensus       110 GseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (425)
T d1sffa_         110 GSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRI  189 (425)
T ss_dssp             HHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHH
T ss_pred             ccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHH
Confidence            999999999888777767889999998876543322 1211             1111111  10110000111 11111


Q ss_pred             H--HcCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012647          223 I--KAAPGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (459)
Q Consensus       223 i--~~~~~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~  299 (459)
                      .  .........+++...+...|. .++++-+++|.++|++||+++|.||++.+++-.+   ..+.... .+-.++++  
T Consensus       190 ~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g---~~~a~~~-~gv~PDi~--  263 (425)
T d1sffa_         190 FKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTG---TLFAMEQ-MGVAPDLT--  263 (425)
T ss_dssp             HHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSGGGG-TTSCCSEE--
T ss_pred             HHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcc---hhhHHHh-cCCCccce--
Confidence            1  111234455555444545565 5788899999999999999999999988864322   1222211 23345544  


Q ss_pred             EcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHh---CChhhHHHHHHHHHHHHHHH
Q 012647          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVV---GNPALFDEWKAEMEMMAGRI  376 (459)
Q Consensus       300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L---~~~~~~~~~~~~~~~~~~~~  376 (459)
                       +++|.++ .|+.+|.+++   +++    +.+.+.......+.+.+.++..++...|   ++.++       +++..+.-
T Consensus       264 -~~gK~l~-gG~P~~av~~---~~~----i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~~-------~~~~~~~g  327 (425)
T d1sffa_         264 -TFAKSIA-GGFPLAGVTG---RAE----VMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENL-------LQKANDLG  327 (425)
T ss_dssp             -EECGGGG-TSSCCEEEEE---EHH----HHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTH-------HHHHHHHH
T ss_pred             -ecccccC-CCcceEEEEE---cHH----HHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHHhhh-------hhhhhhhh
Confidence             5899998 7899999876   777    3333332222222244445555554433   22221       12222222


Q ss_pred             HHHHHHHHHHHhhccCCCCCcccccCCcceeee--cC-----C-C----HHHHHHHHhcccEEEcCCC------cEEEc-
Q 012647          377 KNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF--TG-----L-N----KAQSDNMTNKWHVYMTKDG------RISLA-  437 (459)
Q Consensus       377 ~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~--~~-----l-~----~~~~~~ll~~~gI~v~~gg------Ris~~-  437 (459)
                      +..++.+.+.++ +.+.   +..+...|.++.+  ..     . +    ..+.+++++ +||.+.++|      |++.+ 
T Consensus       328 ~~l~~~l~~~~~-~~~~---v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~-~Gvl~~~~g~~~n~i~~~PpL  402 (425)
T d1sffa_         328 QKLKDGLLAIAE-KHPE---IGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARD-KGLILLSCGPYYNVLRILVPL  402 (425)
T ss_dssp             HHHHHHHHHHHH-TCTT---EEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHH-TTEECEEESTTSCEEEECCCT
T ss_pred             hhhhhhhhhhHh-hCCc---eEEEEccccEEEEEEeccCccCCccHHHHHHHHHHHHH-CCCEEeccCCCCCEEEEECCC
Confidence            333344444444 4432   2223334444322  11     1 2    244567776 599988764      44422 


Q ss_pred             cCChhhHHHHHHHHHHHHhhcC
Q 012647          438 GLSLAKCEYLADAIIDSYHNVS  459 (459)
Q Consensus       438 ~~~~e~i~~~~~~l~~~~~~~~  459 (459)
                      ..++++|+++++++.+++++++
T Consensus       403 ~it~~eid~~l~~l~~al~eik  424 (425)
T d1sffa_         403 TIEDAQIRQGLEIISQCFDEAK  424 (425)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHHHHhc
Confidence            2389999999999999999864

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.65  E-value=9e-15  Score=145.05  Aligned_cols=364  Identities=10%  Similarity=-0.004  Sum_probs=217.1

Q ss_pred             CCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHH-HHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCC
Q 012647           67 PDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKK-AENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNS  145 (459)
Q Consensus        67 ~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~-a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~  145 (459)
                      +.+..++.+.+...-.+.......+.++..-..+..++.+.. .+...+..+ ...|.......++.+.+.+++....|.
T Consensus        50 g~~~~~~l~~~~~~i~~~~~~~~~P~f~~~~~~~~~~~~~l~~~~~~~~n~n-~~~~~~sp~~t~iE~~v~~wl~~l~g~  128 (476)
T d1js3a_          50 PDTFEDILQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCI-GFSWAASPACTELETVMMDWLGKMLQL  128 (476)
T ss_dssp             CCCHHHHHHHHHHTTGGGCCCTTSTTBCSSSCCCCCHHHHHHHHHHHHHCCC-CSSGGGCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHhCCCCCCCCCCeeEeCCCCCCHHHHHHHHHHHhhccc-ccchhhhhhHHHHHHHHHHHHHHHhCC
Confidence            334555555554322223333333333221111222444444 334444432 244544555567777787887776665


Q ss_pred             ccc-------cCceEEeecccchhHHHHHHHHHHHh--------CCC---------CEEEEcCCCCcchHHHhhhCCCCe
Q 012647          146 VLK-------EQRVATVQGLSGTGSLRLAAALIERY--------FPG---------AKVLISSPTWGNHKNIFNDARVPW  201 (459)
Q Consensus       146 ~~~-------~~~i~~~~t~ggt~a~~l~~~~~~~~--------~~g---------d~Vlv~~p~y~~~~~~~~~~G~~v  201 (459)
                      +-.       ...-++  |+|||+++..+....+..        ..|         -.|++++-++..+...+...|..+
T Consensus       129 p~~~~~~~~~~~~G~~--~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl~~  206 (476)
T d1js3a_         129 PEAFLAGEAGEGGGVI--QGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKL  206 (476)
T ss_dssp             CGGGCCTTTCSCEEEE--ESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEE
T ss_pred             CcccccCCCCCCCceE--CCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccHHHHHHHHhcCceE
Confidence            321       122345  899999999875443221        011         158888889989999999999999


Q ss_pred             eeeeeecCCCCCCCHHHHHHHHHc---CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCC
Q 012647          202 SEYRYYDPKTVGLDFEGMIADIKA---APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGS  278 (459)
Q Consensus       202 ~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~  278 (459)
                      +.+|+  ++++.+|++.|++.|++   ....+.+|+.+..++.||.+   +++++|+++|++||+|+++|.||.++....
T Consensus       207 ~~v~~--d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~i---Dpl~~I~~i~~~~~~wlHVDAA~Gg~~~~~  281 (476)
T d1js3a_         207 KAIPS--DGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSF---DNLLEVGPICHEEDIWLHVDAAYAGSAFIC  281 (476)
T ss_dssp             EEECC--CTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCB---CCHHHHHHHHHHTTCEEEEECTTGGGGGGS
T ss_pred             EEecc--CCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceee---ccHHHHHHHHHhcCcEEEEecccchhhhhh
Confidence            99998  45789999999999976   22345667778899999999   999999999999999999999998865321


Q ss_pred             CCCChhHHHHHHhc-CCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHH----HHHhhcc----------ccc-c
Q 012647          279 LDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKS----QLKRLAR----------PMY-S  342 (459)
Q Consensus       279 ~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~----~~~~~~~----------~~~-~  342 (459)
                      .+     .+..... ..-+-+..+++|.++.|. ..|.+  .++++........    .+.....          ... .
T Consensus       282 ~~-----~~~~~~gi~~aDSit~d~HK~l~~P~-~~g~~--l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (476)
T d1js3a_         282 PE-----FRHLLNGVEFADSFNFNPHKWLLVNF-DCSAM--WVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPL  353 (476)
T ss_dssp             TT-----TGGGGTTGGGCSEEEECHHHHSSCCS-SCEEE--EESCHHHHHGGGC------------CCSCCCGGGSSSCS
T ss_pred             cc-----hhhhhcCCcccceeeecCccccccCC-cceee--cccchHHHHHHHhcChhhhcccccccccccccccccccc
Confidence            11     1111111 123566779999988664 36666  4555543211110    0000000          000 0


Q ss_pred             C--CchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc-cCCcceeee--cCC---CH
Q 012647          343 N--PPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI-LRQIGMFSF--TGL---NK  414 (459)
Q Consensus       343 ~--~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~-~~~~g~f~~--~~l---~~  414 (459)
                      +  ...+...++...+.        .+.++++.++..+..+++.+.|+ +.+   ++++. +|+-+..+|  .+.   +.
T Consensus       354 sr~~~al~lw~~l~~~G--------~~g~~~~i~~~~~lA~~l~~~l~-~~~---~fel~~~p~l~iV~Fr~~~~d~~n~  421 (476)
T d1js3a_         354 GRRFRSLKMWFVFRMYG--------VKGLQAYIRKHVQLSHEFEAFVL-QDP---RFEVCAEVTLGLVCFRLKGSDGLNE  421 (476)
T ss_dssp             CCCCTHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH-HCT---TEEECSCCCSSEEEEEESSCHHHHH
T ss_pred             chhhHHHHHHHHHHHHh--------HhHHHHHHHHHHHHHHHHHHHHh-cCC---CeEEECCCceEEEEEEccCChHHHH
Confidence            0  11111112222221        34567888888889999999998 763   26655 445555444  232   23


Q ss_pred             HHHHHHHhcccEEEcCC---C----cEEEccC--ChhhHHHHHHHHHHHHhhc
Q 012647          415 AQSDNMTNKWHVYMTKD---G----RISLAGL--SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       415 ~~~~~ll~~~gI~v~~g---g----Ris~~~~--~~e~i~~~~~~l~~~~~~~  458 (459)
                      ++.+++.++-.+++.+.   |    |+++++.  ++++|+.+++.|++..+++
T Consensus       422 ~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~l  474 (476)
T d1js3a_         422 ALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAEL  474 (476)
T ss_dssp             HHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCEEEeeeeECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            45666666533544432   4    9988743  6788999999999988764

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.6e-14  Score=139.05  Aligned_cols=329  Identities=11%  Similarity=0.071  Sum_probs=195.1

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      +...||+..|.--...|..  +|+|.+++.+.++... ...+....-..++.+.+++.. .       .+.+.+  +.+|
T Consensus        40 G~~ylD~~~g~~~~~lGh~--~p~i~~Av~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~v~~--~~sG  107 (404)
T d2byla1          40 GRKYFDFLSSISAVNQGHC--HPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF-N-------YHKVLP--MNTG  107 (404)
T ss_dssp             CCEEEESSHHHHTCTTCBT--CHHHHHHHHHHHTTCCCCCTTEEESSHHHHHHHHHHHH-T-------CSEEEE--ESSH
T ss_pred             CCEEEEecCCHHHHhhcCC--CHHHHHHHHHHHhhCCCcccccccchHHHHHHhhhhcc-c-------cccccc--ccCc
Confidence            4578899888652333443  7899999998886532 111212223345555555553 2       367888  9999


Q ss_pred             hhHHHHHHHHHHHhC--------CCCEEEEcCCCCcchHH-HhhhC-------C-----CCeeeeeeecCCCCCCCHHHH
Q 012647          161 TGSLRLAAALIERYF--------PGAKVLISSPTWGNHKN-IFNDA-------R-----VPWSEYRYYDPKTVGLDFEGM  219 (459)
Q Consensus       161 t~a~~l~~~~~~~~~--------~gd~Vlv~~p~y~~~~~-~~~~~-------G-----~~v~~v~~~~~~~~~~d~e~l  219 (459)
                      ++|++.+.++.+.+.        ...+++...-+|..... .+...       +     ..+..+|.       .|++.+
T Consensus       108 seA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~-------~d~~~l  180 (404)
T d2byla1         108 VEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPAL  180 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECT-------TCHHHH
T ss_pred             cccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecc-------cCHHHH
Confidence            999999988875432        23467776666653211 11111       1     11222332       378999


Q ss_pred             HHHHHcCCCCcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012647          220 IADIKAAPGGSFILLHGCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (459)
Q Consensus       220 ~~~i~~~~~~~~~ii~~~p~NPTG-~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~  298 (459)
                      ++.+.+  ++...+++.......| ..++++-+++|.++|++||+++|+||+..+|+-.+   ..+.... .+-.++++ 
T Consensus       181 ~~~l~~--~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G---~~~a~~~-~gv~PDi~-  253 (404)
T d2byla1         181 ERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG---RWLAVDY-ENVRPDIV-  253 (404)
T ss_dssp             HHHHTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSGGGG-GTCCCSEE-
T ss_pred             HHhcCC--CCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeecccccccccc---ccchhhh-cCCCCCEE-
Confidence            998875  3455555554455567 55678889999999999999999999988875322   2222221 23334544 


Q ss_pred             EEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012647          299 AQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK  377 (459)
Q Consensus       299 ~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  377 (459)
                        +++|.++ .| +.+|.+++   +++    +.+.+.......+.+.+.++..++...|+   ..   ++  +...++.+
T Consensus       254 --~~gK~l~-gG~~p~~av~~---~~~----i~~~~~~~~~~~T~~gnpl~~aaa~a~L~---~i---~~--~~l~~~~~  315 (404)
T d2byla1         254 --LLGKALS-GGLYPVSAVLC---DDD----IMLTIKPGEHFSTYGGNPLGCRVAIAALE---VL---EE--ENLAENAD  315 (404)
T ss_dssp             --EECGGGG-TTSSCCEEEEE---CHH----HHTTSCTTSSCCSSTTCHHHHHHHHHHHH---HH---HH--TTHHHHHH
T ss_pred             --EECchhh-CCCccceeeee---chh----hhhccCCCCCCcCCCcCHHHHHHHHHHHH---HH---Hh--cCchhhhh
Confidence              7899998 55 78999876   777    33333322222222344444445444332   11   10  23455666


Q ss_pred             HHHHHHHHHHhhccCCCCCcccccCCcceeee--cC---CC-HHHHHHHHhcccEEEcCC-C-cEEEc---cCChhhHHH
Q 012647          378 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF--TG---LN-KAQSDNMTNKWHVYMTKD-G-RISLA---GLSLAKCEY  446 (459)
Q Consensus       378 ~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~--~~---l~-~~~~~~ll~~~gI~v~~g-g-Ris~~---~~~~e~i~~  446 (459)
                      ++.+++.+.|+ ++.-+ .+..+.-.|-++.+  ..   .. .++++++++ +||.+.+. + +|.+.   ..+++++++
T Consensus       316 ~~g~~l~~~l~-~l~~~-~i~~vRg~Gl~~~i~~~~~~~~~~~~~~~~l~~-~Gvl~~~~~~~~i~l~PpL~it~~~id~  392 (404)
T d2byla1         316 KLGIILRNELM-KLPSD-VVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRD-NGLLAKPTHGDIIRFAPPLVIKEDELRE  392 (404)
T ss_dssp             HHHHHHHHHHH-TSCTT-TEEEEEEETTEEEEEECCCSSCCHHHHHHHHHH-TTEECEEEETTEEEECCCTTCCHHHHHH
T ss_pred             HhhHHHHHHHH-hhccc-cceeeeecccEEEEEEecCCchhHHHHHHHHHh-CCeEEecCCCCEEEEECCcCCCHHHHHH
Confidence            67778888888 76311 01112222223222  11   12 346677777 59999874 3 44443   238999999


Q ss_pred             HHHHHHHHHhh
Q 012647          447 LADAIIDSYHN  457 (459)
Q Consensus       447 ~~~~l~~~~~~  457 (459)
                      ++++|.+++++
T Consensus       393 ~~~~l~~al~~  403 (404)
T d2byla1         393 SIEIINKTILS  403 (404)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999999875

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=8e-15  Score=146.08  Aligned_cols=306  Identities=9%  Similarity=0.004  Sum_probs=179.6

Q ss_pred             CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCC---------EEEEcCCCCcch
Q 012647          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA---------KVLISSPTWGNH  190 (459)
Q Consensus       120 ~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd---------~Vlv~~p~y~~~  190 (459)
                      ..|+....+.+|++.+++++..        +.+++  +++|+.|+.++.+.+  +.+||         .+......|...
T Consensus        68 ~~Y~~~~~~~~le~~~a~l~G~--------~~~~~--~~sGt~A~~~a~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~  135 (467)
T d2v1pa1          68 EAFSGSRSYYALAESVKNIFGY--------QYTIP--THQGRGAEQIYIPVL--IKKREQEKGLDRSKMVAFSNYFFDTT  135 (467)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTCC--------SEEEE--ECSSTTTHHHHHHHH--HHHHHHHHCCCTTTCEEEESSCCHHH
T ss_pred             hhhcCCchHHHHHHHHHHHHCC--------CEEEE--CCCCHHHHHHHHHHH--hhccceEecCCCCcEEEEeccccccc
Confidence            5688888889999999999643        45677  899999999985444  33333         355555566666


Q ss_pred             HHHhhhCCCCeeeeeeecC--------CCCCCCHHHHHHHHHcCC-CCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHh
Q 012647          191 KNIFNDARVPWSEYRYYDP--------KTVGLDFEGMIADIKAAP-GGSFILLHGCAHNPT-GIDPTPEQWEKIADVIQE  260 (459)
Q Consensus       191 ~~~~~~~G~~v~~v~~~~~--------~~~~~d~e~l~~~i~~~~-~~~~~ii~~~p~NPT-G~~~s~~~l~~i~~l~~~  260 (459)
                      .......|+.++.++....        ....+|++.+++.+++.. +.+.++++.+.+|.. |.+++.+++++|.++|++
T Consensus       136 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~  215 (467)
T d2v1pa1         136 QGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK  215 (467)
T ss_dssp             HHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHH
Confidence            7777888998888776321        135689999999997632 344566666666655 688899999999999999


Q ss_pred             cCCeeEEeccCCC----------CCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHH
Q 012647          261 KNHIPFFDVAYQG----------FASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVK  330 (459)
Q Consensus       261 ~~~~ii~Deay~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~  330 (459)
                      ||+++++|++...          ..+.+  .....+...... ...++..|.+|.++.+   .|.++ .+.+........
T Consensus       216 ~g~~l~~D~a~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~-~~d~~s~s~~K~~~~~---~gg~i-~~~~~~~~~~~~  288 (467)
T d2v1pa1         216 YDIPVVMDSARFAENAYFIKQREAEYKD--WTIEQITRETYK-YADMLAMSAKKDAMVP---MGGLL-CMKDDSFFDVYT  288 (467)
T ss_dssp             TTCCEEEECTTHHHHHHHHHHHCGGGTT--SCHHHHHHHHGG-GCSEEEEESSSTTCCS---SCEEE-EECSGGGHHHHH
T ss_pred             cCCEEEEechhhhccccccccccccccC--Ccccccchhhcc-cCCEEEecCCCCCCCC---CceeE-EecchhhhhHHH
Confidence            9999999999431          11111  111111111111 2346667888987643   34443 244444322222


Q ss_pred             HHHH---hhccc-cccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcc-
Q 012647          331 SQLK---RLARP-MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIG-  405 (459)
Q Consensus       331 ~~~~---~~~~~-~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g-  405 (459)
                      ....   ..... ...+....+..+....+....        ..+..++..++.+++.+.|. +.+.    .+.+..+. 
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~~~l~~~L~-~~~~----~v~~~~~~~  355 (467)
T d2v1pa1         289 ECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGM--------NLDWLAYRIAQVQYLVDGLE-EIGV----VCQQAGGHA  355 (467)
T ss_dssp             HHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHH-HTTC----CEEEECSSC
T ss_pred             hhcccccccccCcchhhhHHHHHHHHHHHhHHhh--------hHHHHHHHHHHHHHHHHHHH-hcCC----cccCCCccc
Confidence            1111   11111 111233333222222221100        12333444566788888888 7652    22222221 


Q ss_pred             eeee-----cCC------CHHHHHHHHhcccEEEcCC-----------------C----cEEEcc--CChhhHHHHHHHH
Q 012647          406 MFSF-----TGL------NKAQSDNMTNKWHVYMTKD-----------------G----RISLAG--LSLAKCEYLADAI  451 (459)
Q Consensus       406 ~f~~-----~~l------~~~~~~~ll~~~gI~v~~g-----------------g----Ris~~~--~~~e~i~~~~~~l  451 (459)
                      .++.     ...      ....+..++.+.||.....                 .    |+++..  .|+|+||+++++|
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l  435 (467)
T d2v1pa1         356 AFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAF  435 (467)
T ss_dssp             EEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHH
T ss_pred             eeecchhhcCCcchhhhhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHH
Confidence            1111     111      1234556667778854321                 1    887642  3889999999999


Q ss_pred             HHHHhh
Q 012647          452 IDSYHN  457 (459)
Q Consensus       452 ~~~~~~  457 (459)
                      ++++++
T Consensus       436 ~~v~~~  441 (467)
T d2v1pa1         436 KHVKEN  441 (467)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            999874

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=3.8e-14  Score=138.90  Aligned_cols=346  Identities=10%  Similarity=0.034  Sum_probs=195.8

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCC--CCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y--~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...+|+..|.-....|+.  +|.|.+++.+.++......+  .+.....++.+.+.+.....      -+.+.+  +.+
T Consensus        42 G~~ylD~~~g~~~~~lGh~--~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~------~~~v~f--~~s  111 (429)
T d1s0aa_          42 GRRLVDGMSSWWAAIHGYN--HPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQP------LECVFL--ADS  111 (429)
T ss_dssp             SCEEEESSTTTTTCTTCBS--CHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTT------CCEEEE--ESS
T ss_pred             CCEEEECcccHHHHhhcCC--cHHHHHHHHHHHHhcCCcccCCccchHHHHHHHHHHhhhccC------cceeee--ccc
Confidence            3578899888543333443  79999999987765321111  11222233444444442211      367888  999


Q ss_pred             chhHHHHHHHHHHHhC-----CCCEEEEcCCCCcchHH-HhhhCC-------------CCeeeeeeec----CCCCCCCH
Q 012647          160 GTGSLRLAAALIERYF-----PGAKVLISSPTWGNHKN-IFNDAR-------------VPWSEYRYYD----PKTVGLDF  216 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~-----~gd~Vlv~~p~y~~~~~-~~~~~G-------------~~v~~v~~~~----~~~~~~d~  216 (459)
                      |++|++.+.++.+...     ++.+|+....+|.+... .+...|             ......|...    .....-++
T Consensus       112 GseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (429)
T d1s0aa_         112 GSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDM  191 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGG
T ss_pred             cccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhh
Confidence            9999999987776542     34689999888865422 111111             1112222110    11112345


Q ss_pred             HHHHHHHHcCCCCcEEEEeCCC-CCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC
Q 012647          217 EGMIADIKAAPGGSFILLHGCA-HNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM  294 (459)
Q Consensus       217 e~l~~~i~~~~~~~~~ii~~~p-~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~  294 (459)
                      +.+++.+...++....+++... ++--|. .++++-+++|.++|++||+++|.||++.+++-.+   ..+.. ...+..+
T Consensus       192 ~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG---~~~~~-~~~~v~P  267 (429)
T d1s0aa_         192 VGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG---KLFAC-EHAEIAP  267 (429)
T ss_dssp             HHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSGG-GGGTCCC
T ss_pred             hhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccc---ccccc-ccceecc
Confidence            6666655554445555655443 455555 4688999999999999999999999999885332   12222 1223345


Q ss_pred             eEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHh-h-ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHH
Q 012647          295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKR-L-ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMM  372 (459)
Q Consensus       295 ~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~  372 (459)
                      +++   .++|.++-.+..+|.+++   .++..+.+...-.. . ...++ +.+.++..++...|+   ..   +  -+..
T Consensus       268 Di~---~~gK~l~gG~~p~~av~~---~~~i~~~~~~~~~~~~~~~~T~-~gnp~~~aaa~a~L~---~i---~--~~~~  332 (429)
T d1s0aa_         268 DIL---CLGKALTGGTMTLSATLT---TREVAETISNGEAGCFMHGPTF-MGNPLACAAANASLA---IL---E--SGDW  332 (429)
T ss_dssp             SEE---EECGGGGTSSSCCEEEEE---CHHHHHHHHTSTTSSCSCCCTT-TTCHHHHHHHHHHHH---HH---H--TCHH
T ss_pred             ccc---ccccccccccccccchhh---HHHHHhccCCCCCcceeecCCC-CCCcccchhhhcccc---cc---c--cccc
Confidence            555   578999745588999876   77744433221100 1 11222 334444444433332   10   0  0234


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeee--c-CCCH-HHHHHHHhcccEEEcCCC---cEEEc-cCChhhH
Q 012647          373 AGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF--T-GLNK-AQSDNMTNKWHVYMTKDG---RISLA-GLSLAKC  444 (459)
Q Consensus       373 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~--~-~l~~-~~~~~ll~~~gI~v~~gg---Ris~~-~~~~e~i  444 (459)
                      .++.++.-+++.+.|+ ++.-+..+.-+.-.|.++.+  . ..+. .+...+++ +||.+.+.|   |++.. ..++++|
T Consensus       333 ~~~~~~~g~~l~~~L~-~l~~~~~v~~vrg~Gl~~~~e~~~~~~~~~~~~~~~~-~Gl~~~~~g~~i~~~Ppl~it~~ei  410 (429)
T d1s0aa_         333 QQQVADIEVQLREQLA-PARDAEMVADVRVLGAIGVVETTHPVNMAALQKFFVE-QGVWIRPFGKLIYLMPPYIILPQQL  410 (429)
T ss_dssp             HHHHHHHHHHHHHHHG-GGGGCTTEEEEEEETTEEEEEESSCBCHHHHHHHHHH-TTEECCCBTTEEEECCCTTCCHHHH
T ss_pred             cchhhHHHHHHHHHHH-HhccCCceEEEeecccEEEEEecCcccHHHHHHHHHH-CCcEEEecCCEEEEeCCcCCCHHHH
Confidence            5666666777777776 65211112222223333322  1 1233 44456655 599999988   44422 2389999


Q ss_pred             HHHHHHHHHHHhhc
Q 012647          445 EYLADAIIDSYHNV  458 (459)
Q Consensus       445 ~~~~~~l~~~~~~~  458 (459)
                      ++++++|.++++++
T Consensus       411 d~~~~~l~~al~e~  424 (429)
T d1s0aa_         411 QRLTAAVNRAVQDE  424 (429)
T ss_dssp             HHHHHHHHHHTSSG
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999999875

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.61  E-value=9.8e-15  Score=145.26  Aligned_cols=180  Identities=14%  Similarity=-0.032  Sum_probs=104.5

Q ss_pred             CCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh-hCCCC
Q 012647          122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVP  200 (459)
Q Consensus       122 Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~G~~  200 (459)
                      +.|..-+.++++.+|++++.        ++.++  +.+||.+.+++. +.+.+.|||+||++.-++....+... ..+..
T Consensus        62 ~~~~~~i~eae~~~A~~~ga--------~~a~f--~~~Gtt~~n~a~-i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~  130 (462)
T d1c4ka2          62 LIHEGPAVAAEKHAARVYNA--------DKTYF--VLGGSSNANNTV-TSALVSNGDLVLFDRNNHKSVYNSALAMAGGR  130 (462)
T ss_dssp             TTTBTHHHHHHHHHHHHTTC--------SEEEE--ESSHHHHHHHHH-HHHHCCTTCEEEEETTCCHHHHHHHTTTTCCE
T ss_pred             cCCCHHHHHHHHHHHHHhCC--------CeEEE--ECCchHHHHHHH-HHHhcCCCCeEEecccchHHHHHHHHHHhcCC
Confidence            44555568899999999653        44555  555554444432 44567899999999999887665443 34444


Q ss_pred             eeeeeeecCCCC--------CCCHHHHHHHHHc------CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeE
Q 012647          201 WSEYRYYDPKTV--------GLDFEGMIADIKA------APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF  266 (459)
Q Consensus       201 v~~v~~~~~~~~--------~~d~e~l~~~i~~------~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii  266 (459)
                      ++..+..-+..+        .++.+.+.+.+..      ...+++.+++...+|-+|.+   .++++|+++|++||++++
T Consensus       131 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~---~dl~~I~~ia~~~g~~l~  207 (462)
T d1c4ka2         131 PVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTI---YNAHEVVKRIGHLCDYIE  207 (462)
T ss_dssp             EEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEE---ECHHHHHHHHGGGBSEEE
T ss_pred             ceeeecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccch---hhHHHHHHHHHHcCCEEE
Confidence            443332212111        2233322222211      11234434434456778999   778899999999999999


Q ss_pred             EeccCCCCCCCCCCCChhHHHHHH----hcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012647          267 FDVAYQGFASGSLDNDASSVRLFA----TRGMELLVAQSYSKNLGLYAERIGAMNV  318 (459)
Q Consensus       267 ~Deay~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (459)
                      +|+++....... +..........    .....++++.|++|.++.++  .|.++.
T Consensus       208 vD~A~~~~~~~~-~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~--~g~ll~  260 (462)
T d1c4ka2         208 FDSAWVGYEQFI-PMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIH  260 (462)
T ss_dssp             EECTTCCGGGSS-GGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEEE
T ss_pred             Eechhhcccccc-CcCCcchhhccccccccCCccEEEEecCccccccc--ceEEEE
Confidence            999975443210 00000000000    01235799999999998665  466543

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=1.6e-13  Score=131.46  Aligned_cols=215  Identities=11%  Similarity=0.033  Sum_probs=146.3

Q ss_pred             CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh----hCCCC
Q 012647          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVP  200 (459)
Q Consensus       125 ~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~G~~  200 (459)
                      ..-...|.+.++++-.+        +..+.  +++|..|+..+  +++.+.+||+|++....|.+....++    ..|.+
T Consensus        57 nPt~~~le~~la~LEg~--------~~a~~--~~SGMaAi~~~--l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~  124 (391)
T d1cl1a_          57 TLTHFSLQQAMCELEGG--------AGCVL--FPCGAAAVANS--ILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVT  124 (391)
T ss_dssp             CHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCE
T ss_pred             ChhHHHHHHHHHHHhCC--------ccEEE--eccccceeeeh--hhcccCCCCeEEEecccccchhhhhhhcccccccc
Confidence            34456777888887432        44555  79999999988  66678899999999999987665554    56777


Q ss_pred             eeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh--cCCeeEEeccCCCCCCCC
Q 012647          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE--KNHIPFFDVAYQGFASGS  278 (459)
Q Consensus       201 v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~--~~~~ii~Deay~~~~~~~  278 (459)
                      +..++.       .|.+.+++++++   +++++++-+|.||+..+   .++++|+++|++  +|+++++|+.+.......
T Consensus       125 ~~~~d~-------~d~~~~~~~i~~---~t~~i~~EtpsNP~l~v---~Di~~i~~~a~~~~~g~~~vVDnT~atP~~~~  191 (391)
T d1cl1a_         125 TSWFDP-------LIGADIVKHLQP---NTKIVFLESPGSITMEV---HDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFK  191 (391)
T ss_dssp             EEEECT-------TCGGGGGGTCCT---TEEEEEEESSCTTTCCC---CCHHHHHHHHHHHCTTCEEEEECTTTTTTSSC
T ss_pred             cccccC-------cccccccccccc---ccceeeecccCcccccc---cccHHHHHHHHhccCCcEEEEeccccchhhhc
Confidence            766643       267888877775   88999999999999999   556677777765  599999999986544321


Q ss_pred             CCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCC
Q 012647          279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN  358 (459)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  358 (459)
                            ++     ..+-++++.|.+|.++-.|--+|.++  +.+++..+.+......    .....+...+..+..-|+.
T Consensus       192 ------Pl-----~~GaDivvhS~TKy~~GhsdvlgG~v--v~~~~~~~~~~~~~~~----~G~~~~p~~a~ll~rgl~T  254 (391)
T d1cl1a_         192 ------AL-----DFGIDVSIQAATKYLVGHSDAMIGTA--VCNARCWEQLRENAYL----MGQMVDADTAYITSRGLRT  254 (391)
T ss_dssp             ------GG-----GGTCSEEEEETTTTTTCSSSCCCEEE--EECTTTHHHHHHHHHH----TTCCCCHHHHHHHHHHHTT
T ss_pred             ------cc-----ccccceEEeecchhccccccccccce--eccccccccchhhhhc----ccccCCchhhhhhhccchh
Confidence                  11     12357889999999976666567763  3355544444433221    2223444444444443443


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                                +..+.++..++...+.+.|+ +.+
T Consensus       255 ----------L~lR~~~~~~nA~~vA~~L~-~hp  277 (391)
T d1cl1a_         255 ----------LGVRLRQHHESSLKVAEWLA-EHP  277 (391)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHH-TCT
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHH-hcc
Confidence                      34555666777778888887 653

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.60  E-value=6.6e-14  Score=131.50  Aligned_cols=272  Identities=15%  Similarity=0.136  Sum_probs=174.0

Q ss_pred             HHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HhhhCCCCeeeee
Q 012647          130 AFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARVPWSEYR  205 (459)
Q Consensus       130 ~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~G~~v~~v~  205 (459)
                      .|.+.+|++-.+        +..+.  +++|..|+..+  +++.+.+||+|+++.+.|.+-..    .++..|.++..++
T Consensus         2 aLE~~la~Leg~--------~~a~~--~sSGMaAi~~~--l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d   69 (331)
T d1pffa_           2 ALEGKIAKLEHA--------EACAA--TASGMGAIAAS--VWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFID   69 (331)
T ss_dssp             HHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred             HHHHHHHHHhCC--------CeEEE--ECCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEec
Confidence            477888888543        34555  79999999887  66778899999999999976444    4557898888775


Q ss_pred             eecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH-HhcCCeeEEeccCCCCCCCCCCCChh
Q 012647          206 YYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVI-QEKNHIPFFDVAYQGFASGSLDNDAS  284 (459)
Q Consensus       206 ~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~-~~~~~~ii~Deay~~~~~~~~~~~~~  284 (459)
                      .       -|++.+++++++   +++++++.+|.||+..+   .+++++++++ +++|+++|+|+.+.......      
T Consensus        70 ~-------~d~~~~~~~i~~---~t~~i~~Es~~np~~~v---~d~~~~~~~~a~~~~~~~vVDnT~atp~~~~------  130 (331)
T d1pffa_          70 M-------AVPGNIEKHLKP---NTRIVYFETPANPTLKV---IDIEDAVKQARKQKDILVIVDNTFASPILTN------  130 (331)
T ss_dssp             T-------TSTTHHHHTCCT---TEEEEEEESSCTTTCCC---CCHHHHHHHHTTSSSCEEEEECTTTHHHHCC------
T ss_pred             c-------cchhhHhhhccc---ccceeeeeccccccccc---ccchhhhhhhhcccCceEEeecccccccccc------
Confidence            4       267888888876   89999999999999999   5555666664 67899999999976433210      


Q ss_pred             HHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhcccccc-CCchHHHHHHHHHhCChhhHH
Q 012647          285 SVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYS-NPPVHGARIVANVVGNPALFD  363 (459)
Q Consensus       285 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~~~~~~  363 (459)
                      +   +  ..+-++++.|.+|.++-.|--+|.+++  .+++..   ........+...+ ..+...+..+..-|       
T Consensus       131 p---l--~~GaDiVv~S~TKy~~Gh~d~~~G~v~--~~~~~~---~~~~~~~~~~~~G~~l~p~~a~ll~rgl-------  193 (331)
T d1pffa_         131 P---L--DLGVDIVVHSATKYINGHTDVVAGLVC--SRADII---AKVKSQGIKDITGAIISPHDAWLITRGT-------  193 (331)
T ss_dssp             G---G--GGTCSEEEEETTTTTSSSSSCCCEEEE--ECHHHH---HHHHHTCCCCCCCCCCCHHHHHHHHHHH-------
T ss_pred             c---c--ccCCCEEEecchhhcCCCCcccccccc--ccccch---hhhhhhhhhhccCCCCCHHHHHHHHHHH-------
Confidence            1   1  123468999999999766766777633  344422   2211221122222 33333333332222       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc-----------------cCCcceeeecCCCHHHHHHHHhcccE
Q 012647          364 EWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI-----------------LRQIGMFSFTGLNKAQSDNMTNKWHV  426 (459)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~-----------------~~~~g~f~~~~l~~~~~~~ll~~~gI  426 (459)
                         +.+..+.++..++...+.+.|+ +.+.-.  ++.                 ...|+++.|.=-+.+.+.+.++.-.+
T Consensus       194 ---~Tl~~Rm~~~~~nA~~lA~~L~-~hp~V~--~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~~~~~~~f~d~l~l  267 (331)
T d1pffa_         194 ---LTLDMRVKRAAENAQKVAEFLH-EHKAVK--KVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHV  267 (331)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHH-HCTTCC--CEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHTCSS
T ss_pred             ---HHHHHHHHHHHHHHHHHHHhhh-hCCcEE--eeccccccCccHHHHHhhcccccCcccceeeccHHHHHHHHHhCCc
Confidence               3356667777788888888888 653200  111                 11245554432245556666655332


Q ss_pred             ---EEcCC-------------------------C------cEEEccCChhhHHHHHHHHHHHHhhc
Q 012647          427 ---YMTKD-------------------------G------RISLAGLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       427 ---~v~~g-------------------------g------Ris~~~~~~e~i~~~~~~l~~~~~~~  458 (459)
                         .+.-|                         |      |||++-   |+.+.+++-|.++++.+
T Consensus       268 f~~~~SlG~~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlsvGl---E~~~DLi~Dl~~AL~~i  330 (331)
T d1pffa_         268 VSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGC---ENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             SEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHTC
T ss_pred             ceecccCCCCceeEeCccccccccCCHHHHHhcCCCcCeEEEEeee---CCHHHHHHHHHHHHHHh
Confidence               11112                         2      999975   67788888888888764

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.60  E-value=1.9e-13  Score=128.93  Aligned_cols=322  Identities=18%  Similarity=0.232  Sum_probs=202.0

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCC------CcccHHHH---HHHHHHHhcCCCCccccCceEE
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP------IEGLAAFN---KVTAELLFGADNSVLKEQRVAT  154 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~------~~g~~~lr---~aia~~l~~~~~~~~~~~~i~~  154 (459)
                      +.|+|-..++       .++|.|++++...+.+....+|+-      .+-++++.   ...++.+++.       + -+-
T Consensus        24 ~~l~LiaSEN-------~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a-------~-~an   88 (405)
T d1kl1a_          24 AKIELIASEN-------FVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGA-------E-HAN   88 (405)
T ss_dssp             HSEECCTTCC-------CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCC-------S-EEE
T ss_pred             cCceEeccCC-------cCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCC-------C-cce
Confidence            5788887664       237899999888775433333321      22222332   2223333332       2 233


Q ss_pred             eecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh-----hhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCC
Q 012647          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-----NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (459)
Q Consensus       155 ~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~-----~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~  229 (459)
                      +|..+|+.|+..+  +.+.+.|||+|+..++..++|...-     .....+.+.+|++ .+++.+|.+++++.++..  +
T Consensus        89 Vqp~SGs~An~av--~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d-~~~~~ID~d~l~~~a~~~--k  163 (405)
T d1kl1a_          89 VQPHSGAQANMAV--YFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVD-PETHVIDYDDVREKARLH--R  163 (405)
T ss_dssp             CCCSSHHHHHHHH--HHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBC-TTTCSBCHHHHHHHHHHH--C
T ss_pred             eeccCchHHHHHH--HHHhcCCCCEEEEeecccccccccCccccccceEEEEEEeccc-hhcccccHHHHHHHHHhh--C
Confidence            4568888888887  6667889999999998776654321     1224567777875 567899999999999874  5


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc
Q 012647          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (459)
Q Consensus       230 ~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  308 (459)
                      +++|+...-.+|-  .   -+++++.++|.+.|.+++.|.++. ++..++.-.++.       . .-+++..|.+|++  
T Consensus       164 PklIi~G~S~y~r--~---~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~-------~-~aDvvt~tThKtl--  228 (405)
T d1kl1a_         164 PKLIVAAASAYPR--I---IDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPV-------P-YAHFVTTTTHKTL--  228 (405)
T ss_dssp             CSEEEECCSSCCS--C---CCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-------T-TCSEEEEESSSTT--
T ss_pred             cceEEeccccccc--c---cChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChh-------h-hhhheeccccccc--
Confidence            5677765555553  2   347788888999999999999963 222222111111       1 1356788999997  


Q ss_pred             CCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012647          309 YAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  388 (459)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  388 (459)
                      +|-|-|.+..   +++..+++.+..-.    ...+.+.....++..+    .+.+.+..+.+.+.++..++.+.|.+.|.
T Consensus       229 rGPrgg~I~~---~~~~~~~i~~avfP----g~qggp~~~~iAa~Av----al~Ea~~~~fk~Ya~qvv~NAkaLa~~L~  297 (405)
T d1kl1a_         229 RGPRGGMILC---QEQFAKQIDKAIFP----GIQGGPLMHVIAAKAV----AFGEALQDDFKAYAKRVVDNAKRLASALQ  297 (405)
T ss_dssp             CCCSCEEEEE---CHHHHHHHHHHHTT----TTCSSCCHHHHHHHHH----HHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCceEEe---cchhHHHHHhhhCc----ccccCcchhHHHHHHH----HHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence            4777788754   56655554443322    2222222222222111    22222333456777888888999999999


Q ss_pred             hccCCCCCcccccC--Ccceeeec-----CCCHHHHHHHHhcccEEEc----CC---------C-cEEEc-----cCChh
Q 012647          389 AKDKSGKDWSFILR--QIGMFSFT-----GLNKAQSDNMTNKWHVYMT----KD---------G-RISLA-----GLSLA  442 (459)
Q Consensus       389 ~~~g~~~~~~~~~~--~~g~f~~~-----~l~~~~~~~ll~~~gI~v~----~g---------g-Ris~~-----~~~~e  442 (459)
                       +.|    ++++..  +... +|+     +++...++++|++.||.+.    |+         | ||.-.     ++.++
T Consensus       298 -~~G----~~vv~ggTd~H~-vlvdl~~~~~~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~  371 (405)
T d1kl1a_         298 -NEG----FTLVSGGTDNHL-LLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLE  371 (405)
T ss_dssp             -HTT----CEEGGGSCSSSE-EEEECGGGTCCHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHH
T ss_pred             -cCC----ceeecCCCccce-eeccccccCCcHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHH
Confidence             888    465532  2222 333     4577888999999999875    22         3 88633     35789


Q ss_pred             hHHHHHHHHHHHHhh
Q 012647          443 KCEYLADAIIDSYHN  457 (459)
Q Consensus       443 ~i~~~~~~l~~~~~~  457 (459)
                      +++++.+.|.++++.
T Consensus       372 dm~~ia~~I~~~l~~  386 (405)
T d1kl1a_         372 EMDEIAAIIGLVLKN  386 (405)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999998864

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.58  E-value=1.7e-13  Score=132.32  Aligned_cols=191  Identities=14%  Similarity=0.009  Sum_probs=126.3

Q ss_pred             HHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCC
Q 012647          107 KKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPT  186 (459)
Q Consensus       107 ~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~  186 (459)
                      ++++.+.++.++....+  .-..+|.+.+++++..        +..++  +++||.|+.++.+.+ .+.+||+|++|+-+
T Consensus         4 ~~~~~~~l~~~~~~~~G--~~~~~fE~~~~~~~~~--------~~~~~--~~SgT~Al~lal~~l-~~~~gdeVi~p~~t   70 (374)
T d1o69a_           4 LKYIEEVFKSNYIAPLG--EFVNRFEQSVKDYSKS--------ENALA--LNSATAALHLALRVA-GVKQDDIVLASSFT   70 (374)
T ss_dssp             HHHHHHHHHHTTTSCTT--HHHHHHHHHHHHHHCC--------SEEEE--ESCHHHHHHHHHHHT-TCCTTCEEEEESSS
T ss_pred             HHHHHHHHhcCCcCCCC--HHHHHHHHHHHHHHCc--------CeEEE--eCCHHHHHHHHHHHc-CCCCcCEEEeCCcc
Confidence            45667777655422233  3478999999999754        45767  899999999984332 25689999999999


Q ss_pred             CcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeE
Q 012647          187 WGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF  266 (459)
Q Consensus       187 y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii  266 (459)
                      |......+..+|++++.++++ ++....+.+..+..... .++++++++   .+..|..   .++++|.++|+++|++||
T Consensus        71 ~~a~~~~~~~~g~~pv~~Di~-~~~~~~~~~~~~~~~~~-~~~~~aii~---~~~~G~~---~d~~~i~~~~~~~~i~vI  142 (374)
T d1o69a_          71 FIASVAPICYLKAKPVFIDCD-ETYNIDVDLLKLAIKEC-EKKPKALIL---THLYGNA---AKMDEIVEICKENDIVLI  142 (374)
T ss_dssp             CGGGTHHHHHTTCEEEEECBC-TTSSBCHHHHHHHHHHC-SSCCCEEEE---ECGGGCC---CCHHHHHHHHHHTTCEEE
T ss_pred             hHhhHHHHhhccceeEecccc-cccccccccccccchhc-ccccccccc---cccccch---hhhHHHHHHhhccCcchh
Confidence            999999999999999999985 33344444443322222 235656663   4455666   678889999999999999


Q ss_pred             EeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcC--CcCcccCCCCcceEEEEeCChhHHHHHHH
Q 012647          267 FDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY--SKNLGLYAERIGAMNVVCSSSDLAARVKS  331 (459)
Q Consensus       267 ~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~RiG~~~~v~~~~~~~~~~~~  331 (459)
                      +|.| +.++.. .  ....   ....+  ++.+.||  +|.++..|  -|.+  ++.+++..+++..
T Consensus       143 ED~a-~a~g~~-~--~~~~---~G~~g--d~~~fSf~~~K~l~tge--GG~i--~tnn~~~~~~~~~  196 (374)
T d1o69a_         143 EDAA-EALGSF-Y--KNKA---LGTFG--EFGVYSYNGNKIITTSG--GGML--IGKNKEKIEKARF  196 (374)
T ss_dssp             EECT-TCTTCE-E--TTEE---TTSSS--SEEEEECCTTSSSCCSS--CEEE--EESCHHHHHHHHH
T ss_pred             hhhh-hhhcce-E--CCee---cCCCC--ceEEEeccCcccccccc--ceee--hhhhHHHHHhhcc
Confidence            9999 555421 0  0000   11112  4555555  68887433  2554  5788885555443

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.58  E-value=9.2e-14  Score=134.05  Aligned_cols=307  Identities=12%  Similarity=0.077  Sum_probs=187.7

Q ss_pred             ccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCC--
Q 012647          100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG--  177 (459)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~g--  177 (459)
                      |.+.++-++++.+.++.+.   |....-+.+|.+.+++++..        +++++  +++||.|+.++.+.+ .+.+|  
T Consensus         8 p~~~~~~~~~v~~~l~~~~---~~~G~~v~~fE~~~~~~~g~--------k~ai~--~~Sgt~Al~~al~al-~~~~~~~   73 (371)
T d2fnua1           8 PCLDKEDKKAVLEVLNSKQ---LTQGKRSLLFEEALCEFLGV--------KHALV--FNSATSALLTLYRNF-SEFSADR   73 (371)
T ss_dssp             CCCCHHHHHHHHHHHTSSC---CSSSHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHHHHHS-SCCCTTS
T ss_pred             CCCCHHHHHHHHHHHcCCC---ccCCHHHHHHHHHHHHHHCc--------CeEEE--EecHHHHHHHHHHHh-cccCCCC
Confidence            4456777888888886643   44444578999999999754        45667  899999999983322 12244  


Q ss_pred             CEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 012647          178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV  257 (459)
Q Consensus       178 d~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l  257 (459)
                      |+|+++.-+|......+...|++++.+++++  +..++.+.+++.+.+   ++++++.   .+.-|..   .++++|.++
T Consensus        74 ~eVi~p~~t~~a~~~ai~~~G~~pv~vDi~~--~~~~~~~~~~~~~~~---~t~avi~---vh~~G~~---~~~~~i~~~  142 (371)
T d2fnua1          74 NEIITTPISFVATANMLLESGYTPVFAGIKN--DGNIDELALEKLINE---RTKAIVS---VDYAGKS---VEVESVQKL  142 (371)
T ss_dssp             CEEEECSSSCTHHHHHHHHTTCEEEECCBCT--TSSBCGGGSGGGCCT---TEEEEEE---ECGGGCC---CCHHHHHHH
T ss_pred             CeeecccccccccceeeeccCcccccccccc--cccccchhhhhhccc---hhhcccc---ccccccc---ccccccccc
Confidence            4899999999989999999999999999853  335666777776665   7777774   3456777   677789999


Q ss_pred             HHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhc
Q 012647          258 IQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLA  337 (459)
Q Consensus       258 ~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~  337 (459)
                      |+++|+++|+|.+ +.++..- . .. .   ....++..++....+|.++. |. -|.+  ++.+++..+++........
T Consensus       143 ~~~~~i~lIEDaa-qa~Ga~~-~-~~-~---~G~~g~~~~~Sf~~~K~l~~-g~-GG~i--~t~~~~~~~~~~~~~~~g~  211 (371)
T d2fnua1         143 CKKHSLSFLSDSS-HALGSEY-Q-NK-K---VGGFALASVFSFHAIKPITT-AE-GGAV--VTNDSELHEKMKLFRSHGM  211 (371)
T ss_dssp             HHHHTCEEEEECT-TCTTCEE-T-TE-E---TTSSSSEEEEECCTTSSSCC-SS-CEEE--EESCHHHHHHHHHHTBTTE
T ss_pred             ccccchhhccchh-hccCcee-c-cc-c---CCcccccccccccccccccc-cc-ceEE--Eeechhhhhhccccccccc
Confidence            9999999999999 5554210 0 00 0   01122334444444899874 43 3444  5788886666654332211


Q ss_pred             c------------ccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC---
Q 012647          338 R------------PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR---  402 (459)
Q Consensus       338 ~------------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~---  402 (459)
                      .            +.....+.+.+.++..-|+.          +++..++-++..+.+.+.|. ..+.   +....+   
T Consensus       212 ~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~----------l~~~~~~R~~~~~~y~~~l~-~~~~---~~~~~~~~~  277 (371)
T d2fnua1         212 LKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKK----------APFLMQKREEAALTYDRIFK-DNPY---FTPLHPLLK  277 (371)
T ss_dssp             EESSSSCEEESSCCCBCCCCHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHHHT-TCSS---EEESGGGCS
T ss_pred             ccccccccccccccccccccchhhhhhhhhhhh----------ccchhhhhhhhhhhhccccc-cccc---ccccccccc
Confidence            0            01112333333333333332          23333444444555566666 5431   222211   


Q ss_pred             -Ccce--e-eecCC----CHHH-HHHHHhcccEEEcCC----------------C----------c-EEE---ccCChhh
Q 012647          403 -QIGM--F-SFTGL----NKAQ-SDNMTNKWHVYMTKD----------------G----------R-ISL---AGLSLAK  443 (459)
Q Consensus       403 -~~g~--f-~~~~l----~~~~-~~~ll~~~gI~v~~g----------------g----------R-is~---~~~~~e~  443 (459)
                       ...+  | +.+..    +.+. .+.| +++||.+.+.                +          | |++   ..+++++
T Consensus       278 ~~~~~~~~~i~~~~~~~~~r~~~~~~L-~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~d  356 (371)
T d2fnua1         278 DKSSNHLYPILMHQKFFTCKKLILESL-HKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLES  356 (371)
T ss_dssp             SCCCCSCEEEEECGGGGGGHHHHHHHH-HHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHH
T ss_pred             cccccccccccccccchhHHHHHHHHH-HHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHH
Confidence             1111  1 22221    2344 4555 4569987642                1          2 454   3468999


Q ss_pred             HHHHHHHHHHHHhh
Q 012647          444 CEYLADAIIDSYHN  457 (459)
Q Consensus       444 i~~~~~~l~~~~~~  457 (459)
                      ++++++.|.+++++
T Consensus       357 i~~I~~~i~~~~~~  370 (371)
T d2fnua1         357 VQNIAHSVLKTFES  370 (371)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999999875

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.57  E-value=1e-12  Score=125.90  Aligned_cols=222  Identities=12%  Similarity=0.094  Sum_probs=148.4

Q ss_pred             CCCCC--CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----H
Q 012647          120 KEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----I  193 (459)
Q Consensus       120 ~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~----~  193 (459)
                      +.|+-  ..-...|.+.++++-.+        +..+.  +++|..|+..+  +++.+.+||.|++.+..|.+...    .
T Consensus        51 ~~YsR~~nPT~~~le~~la~LEg~--------~~a~~--~sSGmaAi~~~--~l~l~~~gd~vv~~~~~yg~t~~~~~~~  118 (394)
T d1e5ea_          51 YIYTRLGNPTVSNLEGKIAFLEKT--------EACVA--TSSGMGAIAAT--VLTILKAGDHLISDECLYGCTHALFEHA  118 (394)
T ss_dssp             CCBTTTCCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEESCCCHHHHHHHHTH
T ss_pred             ceecCCCCHHHHHHHHHHHHHhCC--------cceee--eccchHHHHHH--HHhhcccccccccccceeehhhHhHHHH
Confidence            44543  33446777888887433        33444  68999999887  66778899999999999976544    4


Q ss_pred             hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH-hcCCeeEEeccCC
Q 012647          194 FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQ-EKNHIPFFDVAYQ  272 (459)
Q Consensus       194 ~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~-~~~~~ii~Deay~  272 (459)
                      +...|.++..++.       -|++.+++++++   +++++++-+|.|||..+   .+++++++.++ ++|+++++|..|.
T Consensus       119 ~~~~gi~~~~~d~-------~d~~~~~~~i~~---~t~lv~~Etp~NP~l~v---~Di~~~~~~~~~~~g~~vvvDnT~a  185 (394)
T d1e5ea_         119 LTKFGIQVDFINT-------AIPGEVKKHMKP---NTKIVYFETPANPTLKI---IDMERVCKDAHSQEGVLVIADNTFC  185 (394)
T ss_dssp             HHHTTCEEEEECT-------TSTTHHHHHCCT---TEEEEEEESSCTTTCCC---CCHHHHHHHHHTSTTCEEEEECTTT
T ss_pred             hhccceeeeccCC-------CCHHHHHHhhcc---cccEEEEeccCCcceee---ehhhhhhhccccccCeEEEecCccc
Confidence            5577888888765       266788888876   88999999999999999   56667777665 4689999999986


Q ss_pred             CCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHH
Q 012647          273 GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIV  352 (459)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (459)
                      ......      ++     ..+-++++.|.+|.++-.|.=+|.++  +.+.+.....+  ............+...+..+
T Consensus       186 tP~~~~------Pl-----~~GaDiVvhS~TKy~~GhsDv~~G~v--~~~~~~~~~~~--~~~~~~~~G~~lsp~~a~ll  250 (394)
T d1e5ea_         186 SPMITN------PV-----DFGVDVVVHSATKYINGHTDVVAGLI--CGKADLLQQIR--MVGIKDITGSVISPHDAWLI  250 (394)
T ss_dssp             CTTTCC------GG-----GGTCSEEEEETTTTTTCSSCCCCEEE--EECHHHHHHHH--HTCCCCCCCCCCCHHHHHHH
T ss_pred             CcccCC------ch-----hcCCCEEEechhhhcCCCcccccccc--cchhhHHHHHH--HHHHHHhhCCCCChHHHHHH
Confidence            544321      11     12346899999999976676666653  33555332221  11122222224444555555


Q ss_pred             HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012647          353 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK  392 (459)
Q Consensus       353 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  392 (459)
                      ..-|+.          +..+.++..++...+.+.|+ +.+
T Consensus       251 ~rgl~T----------L~lRm~r~~~nA~~lA~~L~-~hp  279 (394)
T d1e5ea_         251 TRGLST----------LNIRMKAESENAMKVAEYLK-SHP  279 (394)
T ss_dssp             HHHHTT----------HHHHHHHHHHHHHHHHHHHH-TCT
T ss_pred             Hhhchh----------HHHHHHHHHHHHHHHHHHHh-hcC
Confidence            544443          35556777778888888887 653

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.57  E-value=1.6e-13  Score=134.82  Aligned_cols=341  Identities=11%  Similarity=0.030  Sum_probs=185.2

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC--CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (459)
                      +...||+..|..-..-|..  +|+|.+++.+.+++..  ...+ +.....++-+.+++.....      -+.+.+  +.+
T Consensus        40 G~~ylD~~~g~~~~~lGh~--~p~v~~ai~~q~~~~~~~~~~~-~~~~~~~la~~L~~~~~~~------~~~v~f--~~s  108 (431)
T d1zoda1          40 GRAILDFTSGQMSAVLGHC--HPEIVSVIGEYAGKLDHLFSEM-LSRPVVDLATRLANITPPG------LDRALL--LST  108 (431)
T ss_dssp             CCEEEETTHHHHTCTTCBT--CHHHHHHHHHHHHHCCCCCTTC-CCHHHHHHHHHHHHHSCTT------CCEEEE--ESC
T ss_pred             CCEEEEcccCHHhhhhcCC--CHHHHHHHHHHHhhcccccccc-ccHHHHHHHHHHHHhCCcc------cceeee--ccc
Confidence            4578899887542333443  7999999998886532  1122 2222334444444432211      367888  999


Q ss_pred             chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCC------------CCeeeeeeecCC-------CCCC---CHH
Q 012647          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDAR------------VPWSEYRYYDPK-------TVGL---DFE  217 (459)
Q Consensus       160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G------------~~v~~v~~~~~~-------~~~~---d~e  217 (459)
                      |++|++.+.++.+.....++|+...-+|.+........+            .....++.....       ....   +++
T Consensus       109 GseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (431)
T d1zoda1         109 GAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELD  188 (431)
T ss_dssp             HHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHH
T ss_pred             ccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHH
Confidence            999999999988777777889999888876533322211            112222221000       0001   223


Q ss_pred             HHHHHHHc-CCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012647          218 GMIADIKA-APGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME  295 (459)
Q Consensus       218 ~l~~~i~~-~~~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~  295 (459)
                      .++..+.. .++....+++...+--.|. .++++-+++|.++|++||+++|.||+..+++-.+   ..+.... .+-.++
T Consensus       189 ~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG---~~~~~~~-~gv~PD  264 (431)
T d1zoda1         189 YAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTG---TMFACQR-DGVTPD  264 (431)
T ss_dssp             HHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSTHHH-HTCCCS
T ss_pred             HHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccc---ccccccc-CCCCcc
Confidence            33333322 2334455554444444455 4688889999999999999999999988865322   1222222 344456


Q ss_pred             EEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHh---CChhhHHHHHHHHHHH
Q 012647          296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVV---GNPALFDEWKAEMEMM  372 (459)
Q Consensus       296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L---~~~~~~~~~~~~~~~~  372 (459)
                      ++   .++|.++ .|+.++.+++   .++..+.....  ......+.+.+.++..++...|   +++.+       +++.
T Consensus       265 i~---~~gK~l~-gG~p~~av~~---~~~~~~~~~~~--~~~~~~T~~g~pl~~aaa~a~l~~i~~~~~-------~~~~  328 (431)
T d1zoda1         265 IL---TLSKTLG-AGLPLAAIVT---SAAIEERAHEL--GYLFYTTHVSDPLPAAVGLRVLDVVQRDGL-------VARA  328 (431)
T ss_dssp             EE---EECHHHH-TTSSCEEEEE---CHHHHHHHHHT--TCCCCCTTTTCHHHHHHHHHHHHHHHHTTH-------HHHH
T ss_pred             hh---ccccccc-cccccceeee---eecchhhhhcc--cccccCCCCCCcchHHHHHHHHHHhhhhhh-------hHHH
Confidence            55   6799998 7888888866   66633332211  1111222234444444443332   22221       2222


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeee--c----------CCCHHHHHHHHhcccEE----EcCC-C---
Q 012647          373 AGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF--T----------GLNKAQSDNMTNKWHVY----MTKD-G---  432 (459)
Q Consensus       373 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~--~----------~l~~~~~~~ll~~~gI~----v~~g-g---  432 (459)
                      .+.-+...+.+.+.+. +.+.   +..+.-.|.++.+  .          .+...+.+.+++ +|+.    ..++ +   
T Consensus       329 ~~~g~~l~~~l~~~~~-~~~~---i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~-~Gl~~~~~~~~~~~~~i  403 (431)
T d1zoda1         329 NVMGDRLRRGLLDLME-RFDC---IGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMN-LGLSMNIVQLPGMGGVF  403 (431)
T ss_dssp             HHHHHHHHHHHHHHHH-HCTT---EEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHH-TTEECCEECCTTSCCEE
T ss_pred             HHHHHHHhhhhhhhhh-cCCC---eEEEeecceEEEEEEecCCcccCccHHHHHHHHHHHHH-hCcccCeeeecCCCCEE
Confidence            2222333333344444 4432   1222333333321  1          012344566666 4874    2332 3   


Q ss_pred             cEEEc-cCChhhHHHHHHHHHHHHhhc
Q 012647          433 RISLA-GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       433 Ris~~-~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      |++.+ ..|++++++++++|.++++++
T Consensus       404 ~l~Ppl~it~~eid~~~~~l~~al~~v  430 (431)
T d1zoda1         404 RIAPPLTVSEDEIDLGLSLLGQAIERA  430 (431)
T ss_dssp             EECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            44432 238999999999999999874

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=7.8e-13  Score=125.40  Aligned_cols=323  Identities=17%  Similarity=0.181  Sum_probs=197.3

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCC---Cccc---HHH---HHHHHHHHhcCCCCccccCceEE
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP---IEGL---AAF---NKVTAELLFGADNSVLKEQRVAT  154 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~---~~g~---~~l---r~aia~~l~~~~~~~~~~~~i~~  154 (459)
                      +.|+|-..++       .+++.|++++...+......+|+-   ..|.   +++   ....|+.+++.       + -+-
T Consensus        27 ~~i~LiaSEN-------~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a-------~-~an   91 (416)
T d1dfoa_          27 EHIELIASEN-------YTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGA-------D-YAN   91 (416)
T ss_dssp             HSEECCTTCC-------CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC-------S-EEE
T ss_pred             cCceEecCcc-------cCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCC-------C-cce
Confidence            5788887664       238899999888775443333321   1122   222   22333333332       2 223


Q ss_pred             eecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhh-----CCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCC
Q 012647          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-----ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (459)
Q Consensus       155 ~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-----~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~  229 (459)
                      +|..+|+.|+..+  +.+.+.|||+|+..+....+|...-..     ...+.+.++++  .++.+|.|++++.++..  +
T Consensus        92 Vqp~SGs~AN~av--~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d--~~~~IDyd~l~~~a~~~--k  165 (416)
T d1dfoa_          92 VQPHSGSQANFAV--YTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGID--ATGHIDYADLEKQAKEH--K  165 (416)
T ss_dssp             CCCSSHHHHHHHH--HHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBC--SSSSBCHHHHHHHHHHH--C
T ss_pred             eecccCccHHHHH--HHHhcCCCCeeeeccccccccccccccccccCceEEEEecccC--CccCccHHHHHHHHHHh--c
Confidence            4568888888887  667788999999999888776543221     22355666663  45679999999998874  5


Q ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCC-CCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc
Q 012647          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG-FASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (459)
Q Consensus       230 ~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  308 (459)
                      +++++...-.+|  ..   -+++++.++|.+.|.++++|.++.. +..++.-.++      +.  .-+++..|.+|+|  
T Consensus       166 PklIi~G~S~y~--r~---~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP------~~--~aDvvt~tThKtl--  230 (416)
T d1dfoa_         166 PKMIIGGFSAYS--GV---VDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNP------VP--HAHVVTTTTHKTL--  230 (416)
T ss_dssp             CSEEEEECSSCC--SC---CCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCC------TT--TSSEEEEESSSTT--
T ss_pred             cceEEecccccc--cc---cCHHHHHHHHHhcCceEEcchhhhhcceeccccCCc------cc--ccceeeeehhhcc--
Confidence            567775544444  33   4577888899999999999999642 2211111111      11  1358889999998  


Q ss_pred             CCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHH-hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          309 YAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANV-VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSL  387 (459)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  387 (459)
                      .|-|-|.+..-.+.++..+++.+..-...++.. ....+++.+++.. ...+        +.+...++..++.+.|.+.|
T Consensus       231 rGPrggiI~~~~~~~~~~~~i~~avfPg~qggp-~~~~iaa~Aval~Ea~~~--------~fk~Y~~qvv~NA~~La~~L  301 (416)
T d1dfoa_         231 AGPRGGLILAKGGSEELYKKLNSAVFPGGQGGP-LMHVIAGKAVALKEAMEP--------EFKTYQQQVAKNAKAMVEVF  301 (416)
T ss_dssp             CCCSCEEEEESSCCHHHHHHHHHHHTTTTCSSC-CHHHHHHHHHHHHHTTSH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCceEEEeccchHhHHHHHHhhhCcccccCc-cHHHHHHHHHHHHHHcCH--------HHHHHHHHHHHHHHHHHHHH
Confidence            466778774311235655555444333221111 1233333222211 1122        23566777888889999999


Q ss_pred             hhccCCCCCcccccC--Ccceeeec-----CCCHHHHHHHHhcccEEEc----CC---------C-cEEEc-----cCCh
Q 012647          388 SAKDKSGKDWSFILR--QIGMFSFT-----GLNKAQSDNMTNKWHVYMT----KD---------G-RISLA-----GLSL  441 (459)
Q Consensus       388 ~~~~g~~~~~~~~~~--~~g~f~~~-----~l~~~~~~~ll~~~gI~v~----~g---------g-Ris~~-----~~~~  441 (459)
                      . +.|    ++++..  +..+ +++     +++...++.+|++.||.+.    |+         | ||+-.     ++.+
T Consensus       302 ~-~~G----~~iv~ggTdnHl-vlvdl~~~~~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e  375 (416)
T d1dfoa_         302 L-ERG----YKVVSGGTDNHL-FLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKE  375 (416)
T ss_dssp             H-HTT----CEEGGGSCSSSE-EEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCH
T ss_pred             H-hCC----cccccCCCCCce-eEEEecccCCCHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCH
Confidence            9 887    465532  2223 333     5578889999999999863    32         3 88633     3578


Q ss_pred             hhHHHHHHHHHHHHhh
Q 012647          442 AKCEYLADAIIDSYHN  457 (459)
Q Consensus       442 e~i~~~~~~l~~~~~~  457 (459)
                      ++++++.+.|.++++.
T Consensus       376 ~d~~~iA~~I~~~l~~  391 (416)
T d1dfoa_         376 AEAKELAGWMCDVLDS  391 (416)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            9999999999988864

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.55  E-value=1.6e-12  Score=125.06  Aligned_cols=163  Identities=19%  Similarity=0.117  Sum_probs=120.1

Q ss_pred             CCCCC--CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh--
Q 012647          120 KEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN--  195 (459)
Q Consensus       120 ~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~--  195 (459)
                      +.|+-  ......|.+.|+++-.+        +..+.  +++|..|+..+  +++.+.+||+|+++...|.+....++  
T Consensus        50 ~~YsR~~nPT~~~LE~~la~LE~~--------~~a~~--~~SGmaAi~~~--~~~l~~~gd~il~~~~~Yg~t~~l~~~~  117 (421)
T d2ctza1          50 NIYSRIMNPTVDVLEKRLAALEGG--------KAALA--TASGHAAQFLA--LTTLAQAGDNIVSTPNLYGGTFNQFKVT  117 (421)
T ss_dssp             GSCBTTBCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEECSCCCHHHHHHHHTH
T ss_pred             ceecCCCCHHHHHHHHHHHHHhCC--------CeEEE--ecChHHHHHHH--HHhhcccccceeecCCcCCchhHHHHHH
Confidence            34543  33456788888888533        33444  68899998877  66778899999999999987655544  


Q ss_pred             --hCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-
Q 012647          196 --DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-  272 (459)
Q Consensus       196 --~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~-  272 (459)
                        ..|.++..++..      -+.+..++.+++   ++++|++-+|.|||..+   .++++|+++|+++|+++++|+.+. 
T Consensus       118 ~~~~gi~~~~~d~~------~~~~~~~~~~~~---~t~li~~EtpsNP~l~v---~Di~~i~~iA~~~g~~~vvDnT~a~  185 (421)
T d2ctza1         118 LKRLGIEVRFTSRE------ERPEEFLALTDE---KTRAWWVESIGNPALNI---PDLEALAQAAREKGVALIVDNTFGM  185 (421)
T ss_dssp             HHHTTCEEEECCTT------CCHHHHHHHCCT---TEEEEEEESSCTTTCCC---CCHHHHHHHHHHHTCEEEEECGGGG
T ss_pred             Hhhccccceecccc------cCcchhccccCC---CceEEEEcCCCcceeEe---cchHHHHHHHHhcCCceEecccccc
Confidence              678887776431      133444555554   89999999999999999   778889999999999999999975 


Q ss_pred             -CCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012647          273 -GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (459)
Q Consensus       273 -~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~  318 (459)
                       .+...       ++     ..+-++++.|.+|.++-.|--+|.+++
T Consensus       186 tP~~~~-------Pl-----~~GaDiVvhS~TKyl~GHsD~l~G~vv  220 (421)
T d2ctza1         186 GGYLLR-------PL-----AWGAALVTHSLTKWVGGHGAVIAGAIV  220 (421)
T ss_dssp             GGTSCC-------GG-----GGTCSEEEEETTTTTTCSSCCCCEEEE
T ss_pred             cceecc-------cc-----ccCCcEEEEechhhccCCCCeEEEEEE
Confidence             23221       11     223578999999999878888888754

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.54  E-value=1.2e-12  Score=127.33  Aligned_cols=340  Identities=11%  Similarity=0.028  Sum_probs=181.6

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (459)
                      +...+|+..|..-..-|..  +|+|.+++++.++... ............+.+.+++. ..       .+.+.+  +.+|
T Consensus        38 G~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~v~~--~~sg  105 (404)
T d1z7da1          38 DKRYYDFLSAYSSVNQGHC--HPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNL-LG-------YDKVLM--MNTG  105 (404)
T ss_dssp             CCEEEESSHHHHTTTTCBT--CHHHHHHHHHHHTTCSCCCTTSEEHHHHHHHHHHHHH-HT-------CSEEEE--ESSH
T ss_pred             CCEEEEccccHHHHhhhcC--cHHHHHHHHHHHHhCCCcccccchHHHHHHHHhhhhc-cc-------cceeee--eccc
Confidence            3578898888653333443  7899999988776421 11111111222333333333 22       356777  8999


Q ss_pred             hhHHHHHHHHHHHhC--------CCCEEEEcCCCCcchHHHhhhC----CCCeeeeeeecC--CCCCCCHHHHHHHHHcC
Q 012647          161 TGSLRLAAALIERYF--------PGAKVLISSPTWGNHKNIFNDA----RVPWSEYRYYDP--KTVGLDFEGMIADIKAA  226 (459)
Q Consensus       161 t~a~~l~~~~~~~~~--------~gd~Vlv~~p~y~~~~~~~~~~----G~~v~~v~~~~~--~~~~~d~e~l~~~i~~~  226 (459)
                      +++...+.++.....        ...+++...-+|..........    ..+....|..+.  ....-+.+.++..+.+ 
T Consensus       106 s~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  184 (404)
T d1z7da1         106 AEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKD-  184 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTCHHHHHHHHTS-
T ss_pred             cchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCccccccccchHHHHHHHhcC-
Confidence            999999877765431        2236777777766443222211    111111111000  0001256777776654 


Q ss_pred             CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC
Q 012647          227 PGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (459)
Q Consensus       227 ~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (459)
                       +....+|+-..+...|.+ ++++-+++|.++|++||+++|+||+..+++-.+   ..+.... .+-.++++   +++|.
T Consensus       185 -~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG---~~~~~e~-~gv~PDiv---t~gK~  256 (404)
T d1z7da1         185 -PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTG---KLLCVHH-YNVKPDVI---LLGKA  256 (404)
T ss_dssp             -TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS---SSSGGGG-GTCCCSEE---EECGG
T ss_pred             -CCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCccc---ccccccc-cCCCCCEE---EEccc
Confidence             355566655556667765 566779999999999999999999987775321   2222222 23345555   78999


Q ss_pred             cccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012647          306 LGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD  385 (459)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  385 (459)
                      ++-.+..+|.+++   .++    +.+.+.......+.+.+.++..++...|+--  . . ...++...+.-....+.+.+
T Consensus       257 l~gG~~p~~~v~~---~~~----i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~--~-~-~~~~~~~~~~~~~~~~~l~~  325 (404)
T d1z7da1         257 LSGGHYPISAVLA---NDD----IMLVIKPGEHGSTYGGNPLAASICVEALNVL--I-N-EKLCENAEKLGGPFLENLKR  325 (404)
T ss_dssp             GGTTSSCCEEEEE---CHH----HHTTCCTTCCCCTTTTCHHHHHHHHHHHHHH--H-H-TTHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCcccccc---hHH----HHccCCCCCcCcCCCCCcchhhhhhhhhhhh--h-c-chhhhhhccchhHHHHHHHH
Confidence            9833377888866   777    4443333322333344555555554443210  0 0 01122333333334444455


Q ss_pred             HHhhccCCCCCcccccCCcceeee--cC--CCH-HHHHHHHhcccEEEcCCC----cEEEc-cCChhhHHHHHHHHHHHH
Q 012647          386 SLSAKDKSGKDWSFILRQIGMFSF--TG--LNK-AQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAIIDSY  455 (459)
Q Consensus       386 ~L~~~~g~~~~~~~~~~~~g~f~~--~~--l~~-~~~~~ll~~~gI~v~~gg----Ris~~-~~~~e~i~~~~~~l~~~~  455 (459)
                      .++ +.+.   +..+...|.++.+  ..  .+. +...++++ +||.+.+.+    ||+-+ ..+++++++++++|.+++
T Consensus       326 ~~~-~~~~---v~~vrg~Gl~~~i~~~~~~~~~~~~~~~l~~-~Gl~~~~~~~~~ir~~Ppl~it~~~id~~~~~l~~al  400 (404)
T d1z7da1         326 ELK-DSKI---VRDVRGKGLLCAIEFKNELVNVLDICLKLKE-NGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTV  400 (404)
T ss_dssp             HHT-TCTT---EEEEEEETTEEEEEECTTTCCHHHHHHHHHH-TTEECCEETTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHh-cCCC---eEEEEeeCcEEEEEEcCCcccHHHHHHHHHh-CCeEEecCCCCEEEEECCcCCCHHHHHHHHHHHHHHH
Confidence            555 4432   2222233333322  11  222 34556666 599998755    55422 238999999999999999


Q ss_pred             hhc
Q 012647          456 HNV  458 (459)
Q Consensus       456 ~~~  458 (459)
                      +++
T Consensus       401 k~~  403 (404)
T d1z7da1         401 KFF  403 (404)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            876

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.52  E-value=9.7e-13  Score=126.65  Aligned_cols=331  Identities=14%  Similarity=0.126  Sum_probs=199.1

Q ss_pred             CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC------CCcccHHHHHHHHHHHhcCCCCccccCceEEee
Q 012647           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL------PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (459)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~------~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (459)
                      ...|+|-..++       .+++.|++++...+......+|+      -.+-++++.....+.....++.+.+ ..-+-+|
T Consensus        31 ~~~l~LIaSEN-------~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~-~~~anVq  102 (470)
T d1rv3a_          31 RVGLELIASEN-------FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQ-CWGVNVQ  102 (470)
T ss_dssp             HSSEECCTTCC-------CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTT-TEEEECC
T ss_pred             HcCceEecCCC-------cCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChh-hcccccc
Confidence            36788887664       23889999998877543333332      2223334433332222222222111 1233457


Q ss_pred             cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh----------hCCCCeeeeeeecCCCCCCCHHHHHHHHHcC
Q 012647          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----------DARVPWSEYRYYDPKTVGLDFEGMIADIKAA  226 (459)
Q Consensus       157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----------~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~  226 (459)
                      ..+|+.|+..+  +.+.+.|||+|+..+....+|...-.          ....+.+.++++ .+++.+|.+++++..+..
T Consensus       103 p~SGs~An~av--~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~-~~~~~IDyd~l~~~a~~~  179 (470)
T d1rv3a_         103 PYSGSPANFAV--YTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVN-PDTGYIDYDRLEENARLF  179 (470)
T ss_dssp             CSSHHHHHHHH--HHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBC-TTTCSBCHHHHHHHHHHH
T ss_pred             ccCCccHHHHH--HHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEe-cccCcccHHHHHHHHHhh
Confidence            78999999888  66778899999999876665543211          112456777775 456889999999998873


Q ss_pred             CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCC-CCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC
Q 012647          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG-FASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (459)
Q Consensus       227 ~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  305 (459)
                        ++++|+...-.+|-  .   -+++++.++|.+.|.++++|.++.. |..++.-.++  +    +.  .+++..|.+|+
T Consensus       180 --kPklIi~G~S~y~r--~---~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP--l----~~--aDvvt~tTHKt  244 (470)
T d1rv3a_         180 --HPKLIIAGTSCYSR--N---LDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSP--F----EH--CHVVTTTTHKT  244 (470)
T ss_dssp             --CCSEEEECCSSCCS--C---CCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCG--G----GT--CSEEEEESSGG
T ss_pred             --CcceEeechhhccc--c---CCHHHHHHHHhccCCeEEecchhhhhhccccccCCh--h----he--eeeeeeehhhh
Confidence              55677765555552  2   3577788888999999999999642 2222211111  1    11  36888999999


Q ss_pred             cccCCCCcceEEEEeCCh--------------hHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012647          306 LGLYAERIGAMNVVCSSS--------------DLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEM  371 (459)
Q Consensus       306 ~~~~G~RiG~~~~v~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~  371 (459)
                      |  +|-|-|.+.  +...              ++.+++.+..-    ....+.|...+.++..+    .+.+.+..+.++
T Consensus       245 l--rGPrgGiI~--~~~~~~~~~~~~~~~~~~~~~~~i~~avF----Pg~qggph~~~IAa~Av----a~~ea~~~~fk~  312 (470)
T d1rv3a_         245 L--RGCRAGMIF--YRRGVRSVDPKTGKEILYNLESLINSAVF----PGLQGGPHNHAIAGVAV----ALKQAMTPEFKE  312 (470)
T ss_dssp             G--CCCSCEEEE--EECSBCC-------CCBCCHHHHHHHHHT----TTTCCSCCHHHHHHHHH----HHHHHTSHHHHH
T ss_pred             c--cCCcceEEE--EccccccccccccchhHHHHHHHHhhhcC----ccccccchhhHHHHHHH----HHHHhcChHHHH
Confidence            7  466667774  3332              33333333322    22222222222222111    111111223467


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCcccccC--Ccceeee----cCCCHHHHHHHHhcccEEEc----CC--------C-
Q 012647          372 MAGRIKNVRQKLFDSLSAKDKSGKDWSFILR--QIGMFSF----TGLNKAQSDNMTNKWHVYMT----KD--------G-  432 (459)
Q Consensus       372 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~--~~g~f~~----~~l~~~~~~~ll~~~gI~v~----~g--------g-  432 (459)
                      +.+++.++.+.|.+.|. +.|    ++++..  +..++++    .+++...++++|++.||.+.    |+        | 
T Consensus       313 Ya~qvv~NAk~La~~L~-~~G----~~v~~ggTdnHlvlvdl~~~g~~g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGi  387 (470)
T d1rv3a_         313 YQRQVVANCRALSAALV-ELG----YKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGL  387 (470)
T ss_dssp             HHHHHHHHHHHHHHHHH-HTT----CEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEE
T ss_pred             HHHHHHHHHHHHHHHHH-hCC----ceeccCCCCCceEEEeecccCCcHHHHHHHHHHcCcEECCCcCCCCCCCCCCCee
Confidence            77788888888999998 887    455432  2223332    26688899999999999763    32        3 


Q ss_pred             cEEEc-----cCChhhHHHHHHHHHHHHh
Q 012647          433 RISLA-----GLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       433 Ris~~-----~~~~e~i~~~~~~l~~~~~  456 (459)
                      ||.-.     ++.+++++++.+.|.++++
T Consensus       388 RiGT~alTtrG~~e~dm~~iA~~I~~~l~  416 (470)
T d1rv3a_         388 RLGTPALTSRGLLEKDFQKVAHFIHRGIE  416 (470)
T ss_dssp             EEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             EecCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            88632     4578999999999988774

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=1.5e-12  Score=124.56  Aligned_cols=210  Identities=14%  Similarity=0.095  Sum_probs=136.7

Q ss_pred             cccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh----hCCCCe
Q 012647          126 EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVPW  201 (459)
Q Consensus       126 ~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~G~~v  201 (459)
                      .-...|.++++++-.+        +..+.  +++|..|+..+   +..+.+||.|++....|.+....++    ..|.++
T Consensus        55 PT~~~lE~~la~LE~~--------~~a~~--~sSGmaAi~~~---l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~  121 (393)
T d1n8pa_          55 PNRENLERAVAALENA--------QYGLA--FSSGSATTATI---LQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVET  121 (393)
T ss_dssp             HHHHHHHHHHHHHTTC--------SEEEE--ESCHHHHHHHH---HHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCC
T ss_pred             hHHHHHHHHHHHHhCC--------ceEEE--ecCchhHHHhh---hhcccCCCeeeeeeeecccchhhhhhhhhccccee
Confidence            3446777788877432        33444  57778887543   5567899999999999987655554    456666


Q ss_pred             eeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH----hcCCeeEEeccCCCCCCC
Q 012647          202 SEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQ----EKNHIPFFDVAYQGFASG  277 (459)
Q Consensus       202 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~----~~~~~ii~Deay~~~~~~  277 (459)
                      ..++        .+.+++++++++   +++++++-+|.||+..+   .++++|+++|+    ++|+++|+|+.|......
T Consensus       122 ~~~~--------~~~~~~~~~i~~---~t~lv~~EspsNP~l~v---~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~~  187 (393)
T d1n8pa_         122 SFTN--------DLLNDLPQLIKE---NTKLVWIETPTNPTLKV---TDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS  187 (393)
T ss_dssp             EEES--------SHHHHHHHHSCS---SEEEEEECSSCTTTCCC---CCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC
T ss_pred             EEee--------cchHHHHHHhhh---hcceeEecCcchhhhhc---cchhhhhhhhhhhcccCCceEEEecCccCcccC
Confidence            5543        245778888875   89999999999999999   55666777777    789999999997543321


Q ss_pred             CCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhC
Q 012647          278 SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVG  357 (459)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  357 (459)
                               +.+  ..+-++++.|.+|.++-.|-=+|.++ +..+++..+++......    .....+...+..+..-|+
T Consensus       188 ---------~Pl--~~GADiVvhS~TKyi~GhsDv~~G~v-~~~~~~~~~~l~~~~~~----~G~~~~p~~a~ll~rgl~  251 (393)
T d1n8pa_         188 ---------NPL--NFGADIVVHSATKYINGHSDVVLGVL-ATNNKPLYERLQFLQNA----IGAIPSPFDAWLTHRGLK  251 (393)
T ss_dssp             ---------CGG--GGTCSEEEEETTTTTTCSSCCCCEEE-EESCHHHHHHHHHHHHH----HCCCCCHHHHHHHHHHHT
T ss_pred             ---------Cch--hhCCCEEEEccccccCCCCcccccee-eecchhHHHHHHHHHhh----cCCCCChHHHHHHHhCCc
Confidence                     111  22357899999999976665455553 34566655555433222    222344444455544444


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012647          358 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLS  388 (459)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  388 (459)
                      .          +..+.++..++...+.+.|+
T Consensus       252 T----------l~lR~~~~~~nA~~lA~~L~  272 (393)
T d1n8pa_         252 T----------LHLRVRQAALSANKIAEFLA  272 (393)
T ss_dssp             T----------HHHHHHHHHHHHHHHHHHHT
T ss_pred             c----------hhhHHHHHHHHHHHHHHHHH
Confidence            3          34455566666677777775

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.50  E-value=1.4e-14  Score=139.31  Aligned_cols=324  Identities=11%  Similarity=-0.017  Sum_probs=176.0

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCC-----CCCC---C--CcccHHHHHHHHHHHhcCCCCccccCceE
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-----KEYL---P--IEGLAAFNKVTAELLFGADNSVLKEQRVA  153 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-----~~Y~---~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~  153 (459)
                      ..+||+.|       +..+|+.|+++|.+.+.+...     ...+   +  .+-+++.|+.+++++....     +.+|+
T Consensus         3 ~~~~F~pG-------P~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~-----~~~i~   70 (361)
T d2c0ra1           3 RAYNFNAG-------PAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPT-----GYKVL   70 (361)
T ss_dssp             CCEECCSS-------SCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCS-----SEEEE
T ss_pred             CCcccCCC-------CcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCC-----CCEEE
Confidence            34667643       445799999999987632100     0000   1  1234667777777765431     23566


Q ss_pred             EeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCc--chHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcE
Q 012647          154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWG--NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (459)
Q Consensus       154 ~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~--~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~  231 (459)
                      +  ++|++.+...+. +...+.+|+++++..-...  .+..+.+..|.++..++.  +.+..++++.+++.+..   .+.
T Consensus        71 ~--~~gs~t~~~ea~-~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~  142 (361)
T d2c0ra1          71 F--IQGGASTQFAMI-PMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAASS--EASNYMTLPKLQEIQLQ---DNA  142 (361)
T ss_dssp             E--ESSHHHHHHHHH-HHHHCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEEC--GGGTTCSCCCGGGCCCC---TTE
T ss_pred             E--ECCCchHHHHHH-HhccccCCCceEEEeechhhhhhhhhhhhcCceeeeecc--ccccccchhhhhhhccc---Ccc
Confidence            6  565544443331 4445668888877664432  345567788888888877  34456777777766554   343


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCC
Q 012647          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE  311 (459)
Q Consensus       232 ~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~  311 (459)
                      ..+    +|.||...   +.++|.++|+++|+++++|.+ +.++..+.+.         +..  .+.+.|.+|.++++|.
T Consensus       143 ~~v----~~~tg~~~---~~~~i~~~~~~~~al~~vDav-ss~g~~~id~---------~~~--di~~~s~~k~~~~~~~  203 (361)
T d2c0ra1         143 AYL----HLTSNETI---EGAQFKAFPDTGSVPLIGDMS-SDILSRPFDL---------NQF--GLVYAGAQKNLGPSGV  203 (361)
T ss_dssp             EEE----EEESEETT---TTEECSSCCCCTTSCEEEECT-TTTTSSCCCG---------GGC--SEEEEETTTTTCCSSC
T ss_pred             eEE----EEecccce---ecceEEEeeccCCceEEEEee-cccccccccc---------ccc--eeEEEecccccccccC
Confidence            333    68899884   455688899999999999999 6666543322         222  3445578999998873


Q ss_pred             CcceEEEEeCChhH---------HHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Q 012647          312 RIGAMNVVCSSSDL---------AARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQK  382 (459)
Q Consensus       312 RiG~~~~v~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (459)
                        +++++.  .+..         ...+..........  ..++......+...+.....    .........+.++.+..
T Consensus       204 --~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  273 (361)
T d2c0ra1         204 --TVVIVR--EDLVAESPKHLPTMLRYDTYVKNNSLY--NTPPSFGIYMVNEVLKWIEE----RGGLEGVQQANRKKASL  273 (361)
T ss_dssp             --EEEEEE--GGGSSSCCTTSCGGGCHHHHHHTTTCS--SCCCHHHHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHH
T ss_pred             --cEEEEE--hHHhhhCcccccccccccccccccccc--ccccceeeehhhhHHHhhhh----ccchHHHHHHHHHHHHH
Confidence              333331  1110         00011111111111  12222211111111000000    01123444555555555


Q ss_pred             HHHHHhhccCCCCCc---ccccCCcceeeec--CCCHHHHHHHHhcccEEEcCC-----C-cEEEccC-ChhhHHHHHHH
Q 012647          383 LFDSLSAKDKSGKDW---SFILRQIGMFSFT--GLNKAQSDNMTNKWHVYMTKD-----G-RISLAGL-SLAKCEYLADA  450 (459)
Q Consensus       383 l~~~L~~~~g~~~~~---~~~~~~~g~f~~~--~l~~~~~~~ll~~~gI~v~~g-----g-Ris~~~~-~~e~i~~~~~~  450 (459)
                      +..... ........   +-..+.+..-+.+  +.+.+.+...++++||.+.+|     | |||+... +.|+++.++++
T Consensus       274 ~~~~~~-~~~~~~~~~~~~~~rS~~~~~~~~~~~~~~~~~~~~L~~~GI~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~~  352 (361)
T d2c0ra1         274 IYDAID-QSGGFYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQF  352 (361)
T ss_dssp             HHHHHH-TSTTSSEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHH
T ss_pred             hhhhhh-hcccccccCCChhhccceEEEEECCCcccHHHHHHHHHHCCCEEecCCCcCCeEEEEecCCCCHHHHHHHHHH
Confidence            555554 43210000   0011222111112  223455666677789999887     2 9997665 88999999999


Q ss_pred             HHHHHhh
Q 012647          451 IIDSYHN  457 (459)
Q Consensus       451 l~~~~~~  457 (459)
                      |++..++
T Consensus       353 l~~~~~~  359 (361)
T d2c0ra1         353 MEHFKRS  359 (361)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9997764

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.47  E-value=4.9e-12  Score=121.27  Aligned_cols=326  Identities=14%  Similarity=0.151  Sum_probs=183.6

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC------CCcccHH---HHHHHHHHHhcCCCCccccCc-eE
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL------PIEGLAA---FNKVTAELLFGADNSVLKEQR-VA  153 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~------~~~g~~~---lr~aia~~l~~~~~~~~~~~~-i~  153 (459)
                      ..|+|-..++       .+++.|++++...+......+|+      ..+-+++   +....|..+++.   .  ... -+
T Consensus        28 ~~l~LiaSEN-------~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~---~--~a~w~v   95 (463)
T d2a7va1          28 RGLELIASEN-------FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDL---D--PAQWGV   95 (463)
T ss_dssp             HSEECCTTCC-------CCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTC---C--TTTEEE
T ss_pred             cCeeEeccCC-------cCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCC---C--chhccC
Confidence            5688887664       23889999988877543333332      1222233   333333333332   1  221 11


Q ss_pred             EeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH--------hhhCC--CCeeeeeeecCCCCCCCHHHHHHHH
Q 012647          154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI--------FNDAR--VPWSEYRYYDPKTVGLDFEGMIADI  223 (459)
Q Consensus       154 ~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~--------~~~~G--~~v~~v~~~~~~~~~~d~e~l~~~i  223 (459)
                      =+|..+|+.|+..+  +.+.+.|||+|+..++...+|..-        ....|  .+.+.++++ ++++.+|.+++++.+
T Consensus        96 NVqp~SGs~An~av--~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d-~~~~~IDyd~~~~~a  172 (463)
T d2a7va1          96 NVQPYSGSPANLAV--YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLN-PKTGLIDYNQLALTA  172 (463)
T ss_dssp             ECCCSSHHHHHHHH--HHHHCCSCEECCC-------------------------------CCBC-TTTCSBCHHHHHHHH
T ss_pred             CccccccHHHHHHH--HHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeecc-CCCCcCcHHHHHHHH
Confidence            24568888888877  666788999999999877666422        11222  244555553 456889999999998


Q ss_pred             HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEEcC
Q 012647          224 KAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSY  302 (459)
Q Consensus       224 ~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~  302 (459)
                      +..  ++++|+...-.+|-  .   -+++++.++|.+.|.++++|.++. +|..++.-.++  +    . . -+++..|.
T Consensus       173 ~~~--kPklIi~G~S~y~r--~---~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP--~----~-~-aDvvt~tT  237 (463)
T d2a7va1         173 RLF--RPRLIIAGTSAYAR--L---IDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSP--F----K-H-ADIVTTTT  237 (463)
T ss_dssp             HHH--CCSEEEECCSSCCS--C---CCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCG--G----G-T-CSEEEEES
T ss_pred             hhc--CCceEEeccccccc--c---cCHHHHHHHhhcccceEEechhhhhHHhhhhhhcCh--h----h-h-hhhhhchh
Confidence            874  55677766555553  2   357788888899999999999963 23322221111  1    1 1 35778899


Q ss_pred             CcCcccCCCCcceEEEEeCCh--------------hHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHH
Q 012647          303 SKNLGLYAERIGAMNVVCSSS--------------DLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAE  368 (459)
Q Consensus       303 SK~~~~~G~RiG~~~~v~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~  368 (459)
                      +|+|  +|-|-|.+.  +...              +..+++.+..-.    ...+.|.....++...    .+.+....+
T Consensus       238 HKTl--rGPrgGiIl--~~~~~~~~~~~~~~~~~~~~~~~i~~avFP----g~qggph~h~iAa~Av----a~~ea~~~~  305 (463)
T d2a7va1         238 HKTL--RGARSGLIF--YRKGVKAVDPKTGREIPYTFEDRINFAVFP----SLQGGPHNHAIAAVAV----ALKQACTPM  305 (463)
T ss_dssp             SGGG--CSCSCEEEE--EECSEEEEETTTEEEEECCCHHHHHHHHTT----TTCCSCCHHHHHHHHH----HHHHHHSHH
T ss_pred             hhhh--cCCCceEEE--EcccccccccccCccchhHHHHHhhhhcCc----ccchhhhhhhHHHHHH----HHHHhcCch
Confidence            9997  577767763  4332              434444443322    2222222222222111    111111233


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcce-eeec-----CCCHHHHHHHHhcccEEEc----CC-------
Q 012647          369 MEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGM-FSFT-----GLNKAQSDNMTNKWHVYMT----KD-------  431 (459)
Q Consensus       369 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~-f~~~-----~l~~~~~~~ll~~~gI~v~----~g-------  431 (459)
                      .+...++..++.+.|.+.|. +.|    ++++...... .+++     +++...+++.|++.||.+.    |+       
T Consensus       306 fk~Ya~qVv~NAk~La~~L~-~~G----~~vv~ggTdnHlvlvdl~~~~~~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~  380 (463)
T d2a7va1         306 FREYSLQVLKNARAMADALL-ERG----YSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITP  380 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HTT----CEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hCC----CeeecCCCCCceeeeeccccCCCHHHHHHHHHhccCccCCccCCCCCCCCCC
Confidence            46777788888889999998 887    4555321111 2333     4577889999999999764    22       


Q ss_pred             -C-cEEEc-----cCChhhHHHHHHHHHHHHh
Q 012647          432 -G-RISLA-----GLSLAKCEYLADAIIDSYH  456 (459)
Q Consensus       432 -g-Ris~~-----~~~~e~i~~~~~~l~~~~~  456 (459)
                       | ||.-.     ++.+++++++.+.|.++++
T Consensus       381 sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~  412 (463)
T d2a7va1         381 GGLRLGAPALTSRQFREDDFRRVVDFIDEGVN  412 (463)
T ss_dssp             SEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence             3 88632     3577999999999988774

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.42  E-value=6.2e-12  Score=124.10  Aligned_cols=340  Identities=12%  Similarity=0.051  Sum_probs=178.2

Q ss_pred             CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC---CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012647           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG---ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (459)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~---~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (459)
                      +...+|+..|.-....|+.  +|+|.+++.+.++..   ....+ .......+.+.+++.+......  .-+.+.+  ++
T Consensus        52 G~~ylD~~~g~~~~~lGh~--~p~v~~ai~~q~~~~~~~~~~~~-~~~~~~~~a~~lae~l~~~~~~--~~~~v~f--~~  124 (461)
T d1ohwa_          52 GNRMLDLYSQISSIPIGYS--HPALVKLVQQPQNVSTFINRPAL-GILPPENFVEKLRESLLSVAPK--GMSQLIT--MA  124 (461)
T ss_dssp             SCEEEESSHHHHTCSSCBT--CHHHHHHHHCGGGHHHHHCCCCT-TTSCBTTHHHHHHHTGGGGCCT--TCCEEEE--ES
T ss_pred             CCEEEEcccCHHHHhhcCC--cHHHHHHHHHHHhhhhhcccccc-cccchHHHHHHHHHHHHhhhcc--Ccceeee--ec
Confidence            4578898877643333443  788999988765421   00111 1112234556666665432211  1367888  99


Q ss_pred             cchhHHHHHHHHHHHh--------------------------CCCCEEEEcCCCCcchHH-HhhhCCC-----------C
Q 012647          159 SGTGSLRLAAALIERY--------------------------FPGAKVLISSPTWGNHKN-IFNDARV-----------P  200 (459)
Q Consensus       159 ggt~a~~l~~~~~~~~--------------------------~~gd~Vlv~~p~y~~~~~-~~~~~G~-----------~  200 (459)
                      +|++|++.+.++...+                          .+..+|+...-+|.+... .+...|-           .
T Consensus       125 sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~  204 (461)
T d1ohwa_         125 CGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFD  204 (461)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCC
T ss_pred             chhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccC
Confidence            9999999998876543                          123478998888876422 2221111           1


Q ss_pred             eeeeeeecCC-CC-----------CCCHHHHHHHH---HcCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCe
Q 012647          201 WSEYRYYDPK-TV-----------GLDFEGMIADI---KAAPGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHI  264 (459)
Q Consensus       201 v~~v~~~~~~-~~-----------~~d~e~l~~~i---~~~~~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~  264 (459)
                      ....|..... ..           ..+++.+++.+   ...++...++++...+...|. .++++-+++|.++|++||++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gil  284 (461)
T d1ohwa_         205 WPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCA  284 (461)
T ss_dssp             CCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCE
T ss_pred             CcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcc
Confidence            1111110000 00           01234444443   233445666666666666664 47888899999999999999


Q ss_pred             eEEeccCCCCCCCCCCCChhHHHHH-HhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccC
Q 012647          265 PFFDVAYQGFASGSLDNDASSVRLF-ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSN  343 (459)
Q Consensus       265 ii~Deay~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  343 (459)
                      +|.||++.+++-.+   ..+....+ +...++++   .++|.++ .    |+...   ...    +..........++ +
T Consensus       285 lI~DEV~tG~gRtG---~~~~~e~~gi~~~PDiv---~~gK~l~-~----g~~~~---~~~----~~~~~~~~~~~T~-~  345 (461)
T d1ohwa_         285 FLVDEVQTGGGSTG---KFWAHEHWGLDDPADVM---TFSKKMM-T----GGFFH---KEE----FRPNAPYRIFNTW-L  345 (461)
T ss_dssp             EEEECTTTCSSTTS---SSSGGGGGCCSSCCSEE---EECGGGS-S----EEEEE---CGG----GSCSSTTSSCCSC-S
T ss_pred             eecccccccccccc---ccccccccccccCchhh---hhhhccc-c----ccccc---ccc----ccccccccccccc-c
Confidence            99999988886332   22222221 11124444   6788876 2    44432   222    1111111122333 3


Q ss_pred             CchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCCCcccccCCcceeeecCC-C----HHH
Q 012647          344 PPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK--SGKDWSFILRQIGMFSFTGL-N----KAQ  416 (459)
Q Consensus       344 ~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g--~~~~~~~~~~~~g~f~~~~l-~----~~~  416 (459)
                      .+.++..++...|+   ..   ++  +...++.+++.++|.+.|+ ++.  .|..+..+.-.|-++. +.+ +    .++
T Consensus       346 g~p~~~aaa~a~l~---~i---~~--~~l~~~~~~~g~~l~~~l~-~l~~~~~~~i~~vrG~Gl~~~-ie~~~~~~~~~i  415 (461)
T d1ohwa_         346 GDPSKNLLLAEVIN---II---KR--EDLLSNAAHAGKVLLTGLL-DLQARYPQFISRVRGRGTFCS-FDTPDESIRNKL  415 (461)
T ss_dssp             SCHHHHHHHHHHHH---HH---HH--TTHHHHHHHHHHHHHHHHH-HHHHHCTTTCEEEEEETTEEE-EECSSHHHHHHH
T ss_pred             cccccchhhcccch---hh---hh--hhHHHHHHHHHHHHHHHHH-HHHhhCCCceEEeeeeeEEEE-EEcCCHHHHHHH
Confidence            33344444433332   11   00  1233444455555555555 431  1111122222333332 222 2    234


Q ss_pred             HHHHHhcccEEEcCCC----cEEEc-cCChhhHHHHHHHHHHHHhhc
Q 012647          417 SDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       417 ~~~ll~~~gI~v~~gg----Ris~~-~~~~e~i~~~~~~l~~~~~~~  458 (459)
                      +..+++ +||.+.+.|    ||.-. .+++++++.++++|.+++++.
T Consensus       416 ~~~~~~-~Gll~~~~~~~~ir~~PpL~it~~eid~~~~~l~~~l~ef  461 (461)
T d1ohwa_         416 ISIARN-KGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILADF  461 (461)
T ss_dssp             HHHHHH-TTEECEEETTTEEECCCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHH-CCeEEeeCCCCEEEEeCCcCCCHHHHHHHHHHHHHHHhcC
Confidence            556666 599998855    44422 238999999999999999863

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=8.1e-13  Score=126.23  Aligned_cols=319  Identities=12%  Similarity=-0.007  Sum_probs=173.3

Q ss_pred             ceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCC-----CC---C--CcccHHHHHHHHHHHhcCCCCccccCceEE
Q 012647           85 KLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE-----YL---P--IEGLAAFNKVTAELLFGADNSVLKEQRVAT  154 (459)
Q Consensus        85 ~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~-----Y~---~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (459)
                      +.||+.|       +..+|++|+++|.+.+.+.....     .+   +  ..-+++.|+.++++++...     +..|++
T Consensus         2 ~~nF~pG-------P~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~-----~~~v~~   69 (360)
T d1bjna_           2 IFNFSSG-------PAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPS-----NYKVLF   69 (360)
T ss_dssp             CEECCSS-------SCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCT-----TEEEEE
T ss_pred             eEEeCCC-------CcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCC-----CCEEEE
Confidence            4677643       44579999999999763210000     01   0  1235788999999987642     345777


Q ss_pred             eecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcc--hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEE
Q 012647          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI  232 (459)
Q Consensus       155 ~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~--~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~  232 (459)
                        ++|++++...+. +.....+++.+++..-.+..  +....+..|..++.+...  .+..++.+.+++.+..   ++++
T Consensus        70 --~~gs~t~~~~a~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~  141 (360)
T d1bjna_          70 --CHGGGRGQFAAV-PLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKV--TVDGLRAVKPMREWQL---SDNA  141 (360)
T ss_dssp             --ESSHHHHHHHHH-HHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEE--EETTEEEECCGGGCCC---CSSC
T ss_pred             --ECCchHHHHhhh-hhcccccccccceecccchhhhhHHHHhhcCccceeeccc--cCCCcchhhhhhhhcc---CCce
Confidence              777766666552 33345577888887766543  344555666666655543  2233455555554444   4445


Q ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCC
Q 012647          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAER  312 (459)
Q Consensus       233 ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R  312 (459)
                      +.++..+|-||+..+   .+++.  ++.+++++++|.+ +.+...+.  +.+         +..+.+.|.+|.+++|+- 
T Consensus       142 v~v~~~~~~t~~~~~---~~~i~--~~~~~~~v~vDa~-~~~~~~~v--d~~---------~~dv~~~ss~k~~~~~~~-  203 (360)
T d1bjna_         142 AYMHYCPNETIDGIA---IDETP--DFGADVVVAADFS-STILSRPI--DVS---------RYGVIYAGAQKNIGPAGL-  203 (360)
T ss_dssp             SCEEECSEETTTTEE---CCCCC--CCCTTCCEEEECT-TTTTSSCC--CGG---------GCSEEEEETTTTTSSTTC-
T ss_pred             eEEEecccccccCcc---cccee--cccccceeeeeee-ccccceee--eec---------cceeEEEEcccccccCCC-
Confidence            555567899998843   33343  4668999999988 55554322  222         235677788888886653 


Q ss_pred             cceEEEEeCChhH--------HHHHHHHHHhhccccccCCchHHHHHH----HHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012647          313 IGAMNVVCSSSDL--------AARVKSQLKRLARPMYSNPPVHGARIV----ANVVGNPALFDEWKAEMEMMAGRIKNVR  380 (459)
Q Consensus       313 iG~~~~v~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~L~~~~~~~~~~~~~~~~~~~~~~~~  380 (459)
                      .|+++.  .....        ............ . +..++......+    ...+..        ...+...++.++..
T Consensus       204 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~  271 (360)
T d1bjna_         204 TIVIVR--EDLLGKANIACPSILDYSILNDNGS-M-FNTPPTFAWYLSGLVFKWLKAN--------GGVAEMDKINQQKA  271 (360)
T ss_dssp             EEEEEE--GGGCSCCCTTSCGGGCHHHHHHTTT-C-SSCCCHHHHHHHHHHHHHHHHT--------THHHHHHHHHHHHH
T ss_pred             ceeEee--ehhhhhccccCCcchhhHHHHhhhh-h-ccccccchHHHHHHHHHHHhhh--------hhHHHHHHHHHHHH
Confidence            344322  21110        000111111111 1 112222211111    111111        11334445555555


Q ss_pred             HHHHHHHhhccCCCCCccccc-----CCcce-eeec-CCCHHHHHHHHhcccEEEcCC----C--cEEEccC-ChhhHHH
Q 012647          381 QKLFDSLSAKDKSGKDWSFIL-----RQIGM-FSFT-GLNKAQSDNMTNKWHVYMTKD----G--RISLAGL-SLAKCEY  446 (459)
Q Consensus       381 ~~l~~~L~~~~g~~~~~~~~~-----~~~g~-f~~~-~l~~~~~~~ll~~~gI~v~~g----g--Ris~~~~-~~e~i~~  446 (459)
                      .++.+.+. ..+.   .....     ..+-. |.+. +...+.+..+++++||.+..|    |  |||+... ++|+|++
T Consensus       272 ~~~~~~~~-~~~~---~~~~~~~~~rs~~v~~f~~~~~~~~~~~~~~l~~~Gi~~~~G~~~~g~~Ris~~~~~t~edV~~  347 (360)
T d1bjna_         272 ELLYGVID-NSDF---YRNDVAKRNRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKA  347 (360)
T ss_dssp             HHHHHHHH-HCSS---EECCBCGGGBCSSEEEEEESSGGGHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHH
T ss_pred             HHHHHhhh-cccc---ccccCCcccccceEEEEEcCCcccHHHHHHHHHHCCCEeecCCCccCeEEEEecCCCCHHHHHH
Confidence            55555555 4432   11111     12111 2222 345555556666789999887    3  9998765 8899999


Q ss_pred             HHHHHHHHHhh
Q 012647          447 LADAIIDSYHN  457 (459)
Q Consensus       447 ~~~~l~~~~~~  457 (459)
                      ++++|++..++
T Consensus       348 li~~l~e~~~~  358 (360)
T d1bjna_         348 LTDFMVEFERR  358 (360)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999997754

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.31  E-value=9.9e-12  Score=118.79  Aligned_cols=187  Identities=10%  Similarity=-0.083  Sum_probs=109.7

Q ss_pred             CceeecccccCCCCCCccCcHHHHHHHHHHhhcCC---------CCCCCC--CcccHHHHHHHHHHHhcCCCCccccCce
Q 012647           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE---------NKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRV  152 (459)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~---------~~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i  152 (459)
                      .+.||+.|       +..+|++|++++.+.+.+-.         .|+ ++  ..-+++.|+.++++++...     +..|
T Consensus         3 ~~~nF~pG-------P~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHR-s~~~~~~~~~~r~~l~~l~~~~~-----~~~i   69 (360)
T d1w23a_           3 QVFNFNAG-------PSALPKPALERAQKELLNFNDTQMSVMELSHR-SQSYEEVHEQAQNLLRELLQIPN-----DYQI   69 (360)
T ss_dssp             CCEECCSS-------SCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTT-SHHHHHHHHHHHHHHHHHHTCCT-----TEEE
T ss_pred             ceeEeCCC-------CcCCCHHHHHHHHHHHHhhcccCccccccCcC-CHHHHHHHHHHHHHHHHHhCCCC-----CCEE
Confidence            45677754       34468999999998652200         000 00  1234678899999986531     2245


Q ss_pred             EEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcc--hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCc
Q 012647          153 ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGS  230 (459)
Q Consensus       153 ~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~--~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~  230 (459)
                      ++  ++|++++...+. ......+++.|++....+..  +...++..+..++.....  .....+++.+++....   .+
T Consensus        70 ~~--~~gt~~~~~~~~-~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~  141 (360)
T d1w23a_          70 LF--LQGGASLQFTML-PMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTK--ANSYQSIPDFSEFQLN---EN  141 (360)
T ss_dssp             EE--ESSHHHHHHHHH-HHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECG--GGTSCSCCCGGGCCCC---TT
T ss_pred             EE--eCCcHHHHHHHH-HhhhcccCcccceeeccchhhhhHHHHHHhhhcceeeccc--cccccchhhhhhcccc---cc
Confidence            65  666665655542 34445578888887765443  334455566555555442  2223344444443332   33


Q ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCC
Q 012647          231 FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA  310 (459)
Q Consensus       231 ~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G  310 (459)
                      ...+    +|-||.+   .++++|+++|+++|+++++|.+ +.++..+.+.         +..+  +.+.+++|..+++|
T Consensus       142 ~~~~----~~~tg~~---~~~~~i~~~~~~~g~l~ivDav-qs~g~~~id~---------~~~~--vd~~~~~~~k~~~~  202 (360)
T d1w23a_         142 DAYL----HITSNNT---IYGTQYQNFPEINHAPLIADMS-SDILSRPLKV---------NQFG--MIYAGAQKNLGPSG  202 (360)
T ss_dssp             EEEE----EEESEET---TTTEECSSCCCCCSSCEEEECT-TTTTSSCCCG---------GGCS--EEEEETTTTTSCTT
T ss_pred             ccee----EecCCcc---ccceeeeeccccceeeEEeecc-cccccccccc---------cccc--ceEEeeccccccCC
Confidence            3333    5778988   5566788999999999999999 7776543332         2333  33346677766555

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=98.82  E-value=1.1e-07  Score=91.25  Aligned_cols=258  Identities=9%  Similarity=0.006  Sum_probs=145.8

Q ss_pred             cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEE
Q 012647          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI  232 (459)
Q Consensus       157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~  232 (459)
                      -.|+++....+. +.......+++++..-.++.+...    ++.+|.+++.+|.++   ++.+.++    +.   +.+..
T Consensus       131 ~~ga~a~~~~~~-~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~---~~~~~~~----~~---~~~Aa  199 (437)
T d1wyua1         131 YDGATALAEGVL-LALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEG---GRTPLPE----VG---EEVGA  199 (437)
T ss_dssp             SSHHHHHHHHHH-HHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBT---TBCCCCC----CC---TTEEE
T ss_pred             hHHHHHHHHHHH-HHHhhhcccccccccccChHHhhhhhhhcccceeeEEeeeccc---ccchhhh----hc---cceeE
Confidence            345555555542 333344678899999888766554    457899999999842   2233332    22   37888


Q ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc----
Q 012647          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL----  308 (459)
Q Consensus       233 ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~----  308 (459)
                      +++.+||. .|..   +++++|++++++.|.+++.|..-..++  ..  ..+      .+.+-++++++ +|.||.    
T Consensus       200 vmi~~Pnt-~G~~---ed~~~i~~~~h~~G~l~~~~ad~~al~--~l--~~P------g~~GaDi~~g~-~q~fg~p~g~  264 (437)
T d1wyua1         200 VVVQNPNF-LGAL---EDLGPFAEAAHGAGALFVAVADPLSLG--VL--KPP------GAYGADIAVGD-GQSLGLPMGF  264 (437)
T ss_dssp             EEEESSCT-TSBC---CCHHHHHHHHHHTTCEEEEECCTTGGG--TB--CCH------HHHTCSEEEEE-CTTTTCCCGG
T ss_pred             EEEccccc-cccc---cchHHHHHHhhhccceEEeeechhhhh--cc--ccc------cccccceEeec-cceeccccCC
Confidence            88888854 6888   678999999999999887775422222  11  111      11133455555 555432    


Q ss_pred             CCCCcceEEEEeCChhHHHHHH------------------------HHHHhhc--cccccCCchHHHHHHHHHhCChhhH
Q 012647          309 YAERIGAMNVVCSSSDLAARVK------------------------SQLKRLA--RPMYSNPPVHGARIVANVVGNPALF  362 (459)
Q Consensus       309 ~G~RiG~~~~v~~~~~~~~~~~------------------------~~~~~~~--~~~~~~~~~~~~~~~~~~L~~~~~~  362 (459)
                      .|--.|++.+   .+++...+.                        +..++.+  .+.+.+...++.++...+..-+   
T Consensus       265 GGP~~G~~a~---~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG---  338 (437)
T d1wyua1         265 GGPHFGFLAT---KKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALG---  338 (437)
T ss_dssp             GCSCCEEEEE---CGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHH---
T ss_pred             CcCccccccc---cchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcC---
Confidence            2233577755   444211110                        0011111  1111122222333333221111   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCccee---e-ecCCCHHH-HHHHHhcccEEE----cC---
Q 012647          363 DEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF---S-FTGLNKAQ-SDNMTNKWHVYM----TK---  430 (459)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f---~-~~~l~~~~-~~~ll~~~gI~v----~~---  430 (459)
                         .+.++++.++...+.+++.+.|. +++.   ++... ++.+|   + -.+.+.+. .++|++ +|+..    .+   
T Consensus       339 ---~~GL~~ia~~a~~~A~yl~~~L~-~~~g---~~~~~-~~~~f~ef~v~~~~~~~~i~k~L~d-~G~~~~~~~~~~~~  409 (437)
T d1wyua1         339 ---PEGLREVALKSVEMAHKLHALLL-EVPG---VRPFT-PKPFFNEFALALPKDPEAVRRALAE-RGFHGATPVPREYG  409 (437)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHT-TSTT---CEECS-CSSBCSEEEEECSSCHHHHHHHHHH-TTCCCCEECCTTSC
T ss_pred             ---cccHHHHHHHHHHHHHHHHHHhh-hcCC---eeccC-CCCeeeEEEEECCCCHHHHHHHHHh-CCCCCCcccccCCC
Confidence               35688999999999999999999 7631   34332 23333   1 12445544 566666 58852    11   


Q ss_pred             CC--cEEEccC-ChhhHHHHHHHHHHHH
Q 012647          431 DG--RISLAGL-SLAKCEYLADAIIDSY  455 (459)
Q Consensus       431 gg--Ris~~~~-~~e~i~~~~~~l~~~~  455 (459)
                      .+  .|+++.. ++++|++++++|++++
T Consensus       410 ~~~lli~~TE~~tkeeiD~~v~al~eil  437 (437)
T d1wyua1         410 ENLALFAATELHEEEDLLALREALKEVL  437 (437)
T ss_dssp             SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             CCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence            12  5666533 7899999999998874

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=98.54  E-value=4.9e-06  Score=80.66  Aligned_cols=248  Identities=11%  Similarity=0.055  Sum_probs=141.8

Q ss_pred             EEEEcCCCC-cchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 012647          179 KVLISSPTW-GNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV  257 (459)
Q Consensus       179 ~Vlv~~p~y-~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l  257 (459)
                      .+++..+.+ ..+.......+.+++.++.  +.....|.+.+.....+   .+..+++.+|++.-+..   +..++++++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~a~v~v~~p~~~g~~e---~~~~~~~~~  227 (471)
T d1wyub1         156 RVVLVPDSAHGSNPATASMAGYQVREIPS--GPEGEVDLEALKRELGP---HVAALMLTNPNTLGLFE---RRILEISRL  227 (471)
T ss_dssp             CEEEEETTSCTHHHHHHHHTTCEEEEECB--CTTSSBCHHHHHHHCST---TEEEEEECSSCTTSCCC---TTHHHHHHH
T ss_pred             ccccCCcccccceeeeeecccceeecccc--cccccccchhhhhhhhc---cccceeeccCCCccccc---chhhhhHHH
Confidence            344444444 4455556667777888876  44567888888887665   67777778888776666   667889999


Q ss_pred             HHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc----CCCCcceEEEEeCChhHHHHHHHHH
Q 012647          258 IQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL----YAERIGAMNVVCSSSDLAARVKSQL  333 (459)
Q Consensus       258 ~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~----~G~RiG~~~~v~~~~~~~~~~~~~~  333 (459)
                      +++.+..+++|.+--..... .  ..++     +.+..+++ ...++.||.    .|--+|++.+   .+++...+..++
T Consensus       228 ~h~~g~~~~~~~~~~~~~~~-l--~~p~-----~~g~div~-vg~~q~~G~P~~~GGP~~G~~a~---~~~~~R~~PGRi  295 (471)
T d1wyub1         228 CKEAGVQLYYDGANLNAIMG-W--ARPG-----DMGFDVVH-LNLHKTFTVPHGGGGPGSGPVGV---KAHLAPYLPVPL  295 (471)
T ss_dssp             HHHHTCEEEEEGGGGGGTTT-T--CCHH-----HHTCSEEE-CCTTTTTCCCCTTSCCCCCCEEE---CGGGGGGCCSCE
T ss_pred             HHhccccccccccchhhhhh-c--cccC-----cccccccc-cccccccccccccccccccceee---hhhhhccCCCce
Confidence            99999888888763222211 1  1111     12233443 344554433    3445788865   555221111000


Q ss_pred             --------------HhhccccccCCc-hHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcc
Q 012647          334 --------------KRLARPMYSNPP-VHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWS  398 (459)
Q Consensus       334 --------------~~~~~~~~~~~~-~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~  398 (459)
                                    ...++....+.+ .+.+.++...+.   +..  .+.++++.+....+..++.+.|+ ..|    ++
T Consensus       296 V~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYls---llG--~~GL~elA~~~~~~A~Yla~~L~-~~G----~~  365 (471)
T d1wyub1         296 VERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIR---TLG--LEGLKKAAALAVLNARYLKELLK-EKG----YR  365 (471)
T ss_dssp             EEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHH---HHH--HHHHHHHHHHHHHHHHHHHHHHH-HTT----CB
T ss_pred             ecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHH---HhC--chhHHHHHHHHHHHHHHHHHHHh-hcC----ce
Confidence                          000011111222 222222211111   111  46788999999999999999998 766    45


Q ss_pred             cccCCccee---ee-c--CCCHH-HHHHHHhcccEEEc----C----CC-cEEEccC-ChhhHHHHHHHHHHHHhhc
Q 012647          399 FILRQIGMF---SF-T--GLNKA-QSDNMTNKWHVYMT----K----DG-RISLAGL-SLAKCEYLADAIIDSYHNV  458 (459)
Q Consensus       399 ~~~~~~g~f---~~-~--~l~~~-~~~~ll~~~gI~v~----~----gg-Ris~~~~-~~e~i~~~~~~l~~~~~~~  458 (459)
                      .. ..+.+|   +. .  +++.+ ..++|++ +|+.-.    |    ++ -|+++-. |++|||.++++|++++++.
T Consensus       366 ~~-~~~~ff~EFvv~~~~~~~~~~i~k~L~~-~G~~~~~~~~p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e~  440 (471)
T d1wyub1         366 VP-YDGPSMHEFVAQPPEGFRALDLAKGLLE-LGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKKP  440 (471)
T ss_dssp             CS-SCSSCCSCEEEBCSTTCCHHHHHHHHHH-TTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTSC
T ss_pred             ec-cCcceeeEEeecCCCCCCHHHHHHHHHH-cCCCCCcccCcCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence            43 333333   11 1  34444 5667777 588532    1    11 4566543 7899999999999999863